LOCUS CM001884 27290986 bp DNA linear CON 26-JUL-2016 DEFINITION Theobroma cacao cultivar Matina 1-6 chromosome 6, whole genome shotgun sequence. ACCESSION CM001884 ALXC01000000 VERSION CM001884.1 DBLINK BioProject: PRJNA51633 BioSample: SAMN02981445 KEYWORDS WGS. SOURCE Theobroma cacao (cacao) ORGANISM Theobroma cacao Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma. REFERENCE 1 (bases 1 to 27290986) AUTHORS Motamayor,J.C., Mockaitis,K., Schmutz,J., Haiminen,N., Iii,D.L., Cornejo,O., Findley,S.D., Zheng,P., Utro,F., Royaert,S., Saski,C., Jenkins,J., Podicheti,R., Zhao,M., Scheffler,B.E., Stack,J.C., Feltus,F.A., Mustiga,G.M., Amores,F., Phillips,W., Marelli,J.P., May,G.D., Shapiro,H., Ma,J., Bustamante,C.D., Schnell,R.J., Main,D., Gilbert,D., Parida,L. and Kuhn,D.N. TITLE The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color JOURNAL Genome Biol. 14 (6), R53 (2013) PUBMED 23731509 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 27290986) AUTHORS Mockaitis,K., Gilbert,D.G., Schmutz,J.J., Kuhn,D., Saski,C., Scheffler,B., Livingstone,D., Jenkins,J., Main,D., Feltus,A., Podicheti,R., Zheng,P., Ficklin,S., Haiminen,N., Royaert,S., May,G.D., Bretting,P., Shapiro,H., Schnell,R., Parida,L. and Motamayor,J.C. TITLE Direct Submission JOURNAL Submitted (31-AUG-2012) Biology Department, Indiana University, 1000 E. 3rd St., Bloomington, IN 47405, USA COMMENT Submission authors: Mockaitis,K., Gilbert,D.G., Podicheti,R., Indiana University, Biology Department, Bloomington, Indiana, USA Schmutz,J.J., Jenkins,J., HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA Saski,C., Feltus,A., Clemson University, CUGI, Clemson, SC, USA May,G.D., NCGR, Santa Fe, New Mexico, USA Kuhn,D., Livingstone,D., Royaert,S., Schnell,R., USDA-ARS, Miami, FL, USA Scheffler,B., USDA-ARS, Stoneville, Mississippi, USA Bretting,P., USDA-ARS, Beltsville, MD, USA Main,D., Zheng,P., Ficklin,S., Washington State University, Pullman, Washington, USA Haiminen,N., Parida,L. IBM, New York, NY, USA Shapiro,H., Motamayor,J.C., Mars, Incorporated, McLean, VA, USA Genome assembly produced by Jeremy Schmutz (Hudson Alpha) This assembly is primarily composed of Roche 454 Titanium STD reads (USDA-ARS, Stoneville), augmented by 6 recombination paired Titanium libraries (CGB, Indiana U), 3 fosmid packaged Sanger sequenced libraries (USDA-ARS, Miami and CUGI, Clemson), and 3 Sanger sequenced BAC Ends libraries (CUGI, Clemson). Included were an additional 2 paired libraries and linear data from a pre-release version of the Roche 1k system (Roche). We also made extensive use of 100x of 90 bp Illumina based paired sequence (NCGR) and 36x paired 101bp sequence (CGB, Indiana U). The assembly process was as follows: ------------------------------------ 1. Cleaned 454 recombination pairs of duplicate pairs and unpaired read data. 2. Discarded STD Titanium reads < 100 bp. 3. Corrected indel errors in the 454 data by aligning all Illumina reads from a 99x set of V2 illumina data. 4. Assembled the 454 data, FES and BES using our in-house version of the Arachne2 assembler, including a step to remove unanchored repetitive sequence. 5. Applied subsequent filtering steps to remove short (< 150bp) and 454 pair only contigs to minimize chimeric projections. 6. Combined the subsequent assembly with the Cacao physical map (CUGI, Clemson) and the existing Cacao genetic marker maps (CATIE, MCCS, and PNG) (USDA-ARS, Miami) to identify potential misassembled scaffolds. Applied 47 scaffold breaks. 7. Rearranged scaffolds based on the genetic map, additional FES data, and the physical map to build chromosome-scale pseudomolecules with 103 joins (represented by 10k N's in the final scaffolds). 8. Screened the resulting scaffolds for mitochondria, chloroplast, unanchored rDNA, and potential prokaryotic contaminants and removed these scaffolds. 9. Sequestered, small, highly repetitive scaffolds (>=95% composed of 24mers occurring at least 4 times in the larger scaffolds) and small scaffolds, less than 1kb of sequence content. 10. Post-processed the final scaffolds to correct 454 insertion/deletion errors using 36x TrueSeq Illumina data . 11. Validated the resulting pseudomolecules against EST data sets collected as part of this project (CGB, Indiana U) and against an 995 kb Sanger based contig (CUGI, Clemson). 12. Inserted the reference sequence into chromosome 5, replacing the WGS sequence in that region. The resulting pseudomolecules (numbered 1-10) capture 94.6% of the assembled sequence and 98.2% of the sample EST set. Assembled Sequence Coverage per Library: ---------------------------------------- LIB COV. INSERT STDDEV ----- ------ --------------- LINE 15.58x N/A TC3A 0.56x 2368 +/- 707 TC3F 0.51x 2545 +/- 801 TC3D 0.56x 3948 +/- 455 TC3B 0.92x 3949 +/- 452 TC5C 0.92x 6278 +/- 662 TC8E 1.04x 7071 +/- 988 TC8F 0.30x 7176 +/- 1258 TC8A 0.97x 8128 +/- 1005 TCFB 0.01x 35552 +/- 4362 TCFA 0.01x 35706 +/- 4341 TCFC 0.26x 36122 +/- 4467 TCCB 0.03x 93963 +/- 14897 TCCC 0.03x 114008 +/- 24776 TCCA 0.04x 127062 +/- 22613 Total 21.74x Final Assembly Statistics: -------------------------- Main genome scaffold total: 711 Main genome contig total: 20103 Main genome scaffold sequence total: 346.0 MB Main genome contig sequence total: 330.8 MB (-> 4.4% gap) Main genome scaffold N/L50: 5/34.4 MB Main genome contig N/L50: 1080/84.4 KB Number of scaffolds > 50 KB: 74% main genome in scaffolds > 50 KB: 98.4% Minimum Number Number Total Total Scaffold Scaffold of of Scaffold Contig Contig Length Scaffolds Contigs Length Length Coverage -------- --------- ------- ----------- ----------- -------- All 711 20,103 345,993,675 330,821,837 95.61% 1 kb 711 20,103 345,993,675 330,821,837 95.61% 2.5 kb 570 19,917 345,771,487 330,635,450 95.62% 5 kb 438 19,654 345,274,253 330,363,628 95.68% 10 kb 260 19,111 343,977,657 329,666,795 95.84% 25 kb 113 17,955 341,704,814 328,516,629 96.14% 50 kb 74 17,270 340,358,744 327,606,137 96.25% 100 kb 36 15,857 337,733,377 325,806,488 96.47% 250 kb 14 13,751 334,312,246 323,434,351 96.75% 500 kb 13 13,655 333,885,350 323,071,182 96.76% 1 mb 11 13,560 332,179,961 321,406,397 96.76% 2.5 mb 10 13,460 330,456,197 319,759,406 96.76% 5 mb 10 13,460 330,456,197 319,759,406 96.76% EST validation: --------------- We used several 454 EST runs to validate expected coding sequence space. We first removed reads < 300bps and removed all duplicate reads (to avoid over counting 454 duplicates). We then placed these at 90% ID and 85% coverage against the assembly. This is a completeness measure, rather than a comprehensive examination of gene space. Organelle sequence excluded: 1015064 total sequences. 992071 sequences (98.15%) place at >90% identity and >85% coverage 4288 library artifacts (0.42%) 9763 sequences have >=50 percent coverage (0.97%) 8942 sequences are not found (0.88%) Organelle sequence included: 1015064 total sequences. 1000012 sequences (98.90%) place at >90% identity and >85% coverage 3883 library artifacts (0.38%) 8485 sequences have >=50 percent coverage (0.84%) 2684 sequences are not found (0.27%) The ESTs that do not place are primarily composed of rDNA and prokaryotic contamination. ##Genome-Assembly-Data-START## Assembly Method :: Jeremy Schmutz v. 2011-08-01 Assembly Name :: Theobroma_cacao_20110822 Genome Coverage :: 15.58x Sequencing Technology :: 454; Illumina; Sanger ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..27290986 /organism="Theobroma cacao" /mol_type="genomic DNA" /cultivar="Matina 1-6" /db_xref="taxon:3641" /chromosome="6" mobile_element complement(156..1766) /note="source:CACAO_LINE_E_132_scaffold_5 6160 7766" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 3015..7970 /note="source:CACAO_LINE_E_216_scaffold_8 2820 7774" /mobile_element_type="retrotransposon:LINE/L1" gene 7176..36686 /locus_tag="TCM_026875" /note="dbxref CacaoGD:Thecc1EG026875" mRNA join(7176..7181,36212..36686) /locus_tag="TCM_026875" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036737t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2399t1" mobile_element 18308..25158 /note="source:CACAO_LINE_E_9_scaffold_1 27 6862" /mobile_element_type="retrotransposon:LINE/L1" gene 25214..33123 /locus_tag="TCM_026877" /note="dbxref CacaoGD:Thecc1EG026877" mRNA join(25214..28645,28882..31922,32025..32109,32170..33123) /locus_tag="TCM_026877" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040846.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042330t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040846" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete; weak similarity to DNAse I-like superfamily protein" CDS join(25267..28645,28882..31922,32025..32109,32170..32768) /locus_tag="TCM_026877" /note="paralog of Thecc1EG042330t1; weak similarity to DNAse I-like superfamily protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25454.1" /db_xref="Phytozome:PGSC0003DMP400040846" /db_xref="TAIR:AT1G43760.1" /translation="MQNALNQHDFPSLTTTHGMPSGRPPDPPHPPPTAPPPQTAPSPP AAETTSLLTTNPPTIWTKNPQLPPSHGCQQAAPTQFQPPTSPRSQKKSFLSIVSGQKP PVVPLSRDPFVFKDRPAAAFYEDEIQTLAQPLKLSLVGKFSRMPKLQDVRSAFKGIGL AGAYEVRWLDYKHILIHLTNEHDCNRVWTKQVWFIANQKMRVFKWTPEFEPEKESAMV PVWIAFPNLKAHLFEKSALLLIAKTVGKPLFVDEATANGSRPSVARVCIEYDCRKPPI DQVWIVVQNRETGTVTSGYPQKVEFSQMPAYCDHCCHVGHKEIDCIVLGNKDKPLGSS KSQFLRVLEAEKKKGYGGSSEKNLEKSKNPEKEKIARQEEPVSQRWQPVNKAGTSGTK DQQGKEIVSVLNRFQAISEDRDESQNRDETQSARTIGGVEVWSEGRENAGKLHVDMRK AHEMKEKGTRTGIDIVQVSDEQLNGKTDPSTAKPSSSNGSKATGKSEVGEILFRDSTE EQRADVEDRHGSSKQSGTKNEAPISVNLQTLEENTQPTVHENRKQQREKTEGNGEKEK SSGADTQDYAVEPSKQTADRSNKKKKDLQKLSNRKIEANPQDKDKYFLIKALEQKQLD NAPTTAGLDFSKVPTAVQQEPRPPTVSRDVQTVLHEKETHGQPGNTAEVEGISTELKE GDEQEPFDVHGLHGQKGGCFSETYLTEHPKDETKVKATVGKTAAGPLPKVNKQRDPTN NGSSKRDMEQTAIEGIEKTFGQQEMQEMAGENSNKHFYNPLPHGPVRSSEDQSVKNFT PLPKPSEAPRKILLKQHSSKKNVTNINEEENLAAQQETTNLNAATPQVWTSEKAADSH ADANPLDQAADNLIQIVSQKREQVGRQTKGIVKTTLYGNEPLPIVKPTSTEEIRMTTP TEGEGTTADGPTPSPPRPELGDNILGMKAQESILEIGQDGTLLQKIGYAGTSQNLKND NLEPSTQTTGWRQKKEQRIAQSVSRLQNVQSDILEGSGEHVPIEEEDTSQMQRQTEQT WVAINDVSSSDKMEDKAENLSNLESASSKCMLNKELSDIPSPSCNSHAELEVHPRERY RRHSDNVIPFENSFSSDTEDATISGGNEEESDDDSIPRELHSDVIFDHPQCLHVRLTS PWLEFPIFVTFVYAKCTRSERTLLWDCLRRLAADIEVPWLVGGDFNIILKREERLYGS APHEGAMEDFASTLLDCGLLDGGFEGNPFTWTNNRMFQRLDRIVYNHHWINKFPITRI QHLNRDGSDHCPLLISCFNSSEKAPSSFRFQHAWVLHHDFKTSVESNWNLPINGSGLQ AFWSKQHRLKQHLKWWNKVMFGDIFSKLKEAEKRVEECEILHQNEQTVESIIKLNKSY AQLNKQLNIEEIFWKQKSGVKWVVEGERNTKFFHTRMQKKRIRSHIFKVQEPDGRWIE DQEQLKQSAIKYFSSLLKFEPCDDSRFQRSLIPSIISNSENELLCAEPNLQEVKDAVF GIDPESAAGPDGFSSYFYQQCWNIIAHDLLDAVRDFFHGANIPRGVTSTTLILLPKKP SASKWSDFRPISLCTVMNKIITKLLSNRLAKILPSIITENQSGFVGGRLISDNILLAQ ELIGKLNTKSRGGNLALKLDMMKAYDRLDWSFLIKVLQHFGFNDQWIGMIQKCISNCW FSLLLNGRTEGYFKFERGLRQGDPISPQLFLIAAEYLSRGLNALYEQYPSLHYSTGVS IPVSHLAFADDVLIFTNGSKSALQRILAFLQEYEEISRQRINAQKSCFVTHTNVSSSR RQIIAQTTGFNHQLLPITYLGAPLYKGHKKVILFNDLVAKIEERITGWENKILSPGGR ITLLKSVLTSLPIYLFQVLKPPVCVLERINRIFNSFLWGGSAASKKIHWTSWAKISLP VKEGGLDIRSLAEVFEAFSMKLWWRFRTTDSLWTRFMRMKYCRGQLPMHTQPKLHDSQ TWKRMVASSAITEQNMRWRVGQGNLFFWHDCWMGETPLISSNHEFSLSMVQVCDFFMN NSWDIEKLKTVLQQEVVDEIAKIPIDAMSKDEAYWAPTPNGEFSTKSAWQLIRKREVV NPVFNFIWHKAIPLTTSFFLWRLLHDWIPVELRMKSKGFQLASRCRCCRSEESIIHVM WDNPVAVQPGHIRTLIPIFTLWFLWVERNDAKHRNLGQQLLEWQWKGDKQIAQEWGIT FQAKSLPPPKVFCWHKPSNGEFKLNVDGSAKLSQNAAGGGVLRDHAGVMIFGFSENLG IQNSLKAELLALYRGLILCRDYNIRRLWIEMDATSVIRLLQGNHRGPHAIRYLLGSIR QLLSHFSFRLTHIFREGNQAADFLANRGHEHQSLQVITVAQGKLRGMLRLDQTSLPYV RFK" mobile_element 33746..34793 /note="source:CACAO_LINE_E_9_scaffold_1 5825 6862" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 34796..36086 /note="source:CACAO_LINE_E_9_scaffold_1 5583 6862" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(36119..36837) /note="source:CACAO_LINE_E_240_scaffold_9 1 720" /mobile_element_type="retrotransposon:LINE/L1" CDS 36315..36554 /locus_tag="TCM_026875" /note="paralog of Thecc1EG036737t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25453.1" /translation="MRAIRDPLGLGICLLSIRRCLSGISFRISHIHRERNQASNHLSN LGHTHQNLQVFSQAEGQLKGILRLDKVSLPYVRFR" mobile_element 36993..40481 /note="source:INTACT83_F5_scaffold_9-int 4439 7946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(40437..40757) /note="source:INTACT146F_F14_scaffold_2-int 5824 6139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(40480..41771) /note="source:scaffold_2_CACTA_0257 882 2178" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(41770..43064) /note="source:scaffold_2_CACTA_0257 882 2178" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(44499..44705) /note="source:scaffold_2_CACTA_0257 1813 2019" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(45833..46909) /note="source:scaffold_2_CACTA_0257 882 1960" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(46908..47785) /note="source:scaffold_2_CACTA_0257 1299 2178" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(47887..48296) /note="source:scaffold_2_CACTA_0257 882 1294" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(48295..48570) /note="source:scaffold_2_CACTA_0257 1903 2178" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(48672..49663) /note="source:scaffold_2_CACTA_0257 882 1875" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(49662..50955) /note="source:scaffold_2_CACTA_0257 882 2178" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(50949..53602) /note="source:CACAO_M_E43348_F5_scaffold_5 754 3408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 54112..54305 /note="source:CACAO_M_S_E6929_F5_scaffold_2 745 939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(54401..54884) /note="source:CACAO_LINE_E_66_scaffold_2 462 943" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 54508..55074 /note="source:CACAO_LINE_E_91_scaffold_3 16 582" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 55073..55328 /note="source:CACAO_M_S_E6929_F5_scaffold_2 928 1184" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(55248..55345) /note="source:scaffold_9_CACTA_0943 5841 5941" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(55994..58110) /note="source:INTACT261_F189_scaffold_2-int 4022 6146" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(59073..60161) /locus_tag="TCM_026880" /note="dbxref CacaoGD:Thecc1EG026880" mRNA complement(join(59073..59363,59480..60161)) /locus_tag="TCM_026880" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage" CDS complement(join(59107..59363,59480..59567)) /locus_tag="TCM_026880" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25455.1" /translation="MFLWLHLQVVRGNDVLLMPLSGFSMSMSSRASSPIISGSDPILK KATSFKEVLIGEVRNGNDIRTVEKKSCRSDVEPLKTFRAPAVDKNWMIICVKSWFYCL IWNGLTNWLLAT" gene complement(60252..73199) /locus_tag="TCM_026881" /note="dbxref CacaoGD:Thecc1EG026881" mRNA complement(join(60252..61288,62795..62878,62962..63060, 63272..63330,63748..63832,64100..64197,64508..64732, 64831..64923,65017..65145,65219..65272,65725..65898, 65987..66072,67532..67622,67718..67816,67934..68010, 68096..68264,68399..68490,68811..68921,69194..69299, 69373..69423,69556..69657,70117..70191,70277..70531, 70658..70726,72928..73191)) /locus_tag="TCM_026881" /product="Exocyst complex component sec10 isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011935t6" /inference="similar to AA sequence:frave:gene19021" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g111t5" mRNA complement(join(60582..61290,62798..62878,62958..63060, 63272..63330,63748..63832,64100..64197,64586..64732, 64831..64923,65017..65145,65219..65272,65725..65898, 65987..66072,67532..67622,67718..67816,67934..68010, 68096..68264,68399..68490,68811..68921,69194..69299, 69373..69423,69556..69657,70117..70191,70277..70486, 70658..70726,72928..73199)) /locus_tag="TCM_026881" /product="Exocyst complex component sec10 isoform 4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011935t6" /inference="similar to AA sequence:frave:gene19021" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc64t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g111t5" mRNA complement(join(60582..61288,62795..62878,62958..63060, 63272..63330,63748..63832,64100..64197,64586..64732, 64831..64923,65017..65145,65219..65272,65725..65898, 65987..66072,67532..67622,67718..67816,67934..68010, 68096..68264,68399..68490,68811..68921,69194..69299, 69373..69657,70117..70191,70277..70531,70658..70726, 72928..73199)) /locus_tag="TCM_026881" /product="Exocyst complex component sec10 isoform 3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011935t6" /inference="similar to AA sequence:frave:gene19021" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc64t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g111t5" mRNA complement(join(60717..61288,62795..62878,62962..63060, 63272..63330,63748..63832,64100..64197,64586..64732, 64831..64923,65017..65145,65219..65275,65725..65898, 65987..66072,67532..67622,67718..67816,67934..68010, 68096..68264,68399..68490,68811..68921,69194..69299, 69373..69423,69556..69657,70117..70191,70277..70531, 70658..70726,72928..73163)) /locus_tag="TCM_026881" /product="Exocyst complex component sec10 isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011935t6" /inference="similar to AA sequence:frave:gene19021" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g111t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g111t5" mRNA complement(join(61127..61286,62794..63060,63272..63330, 63748..63832,64100..64197,64586..64732,64831..64923, 65017..65145,65219..65272,65725..65898,65987..66072, 67532..67622,67718..67816,67934..68010,68096..68264, 68399..68490,68811..68921,69194..69299)) /locus_tag="TCM_026881" /product="Exocyst complex component sec10 isoform 6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011935t6" /inference="similar to AA sequence:frave:gene19021" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc62t3; alternateUTRof:Thecc1EG026881t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g111t5" CDS complement(join(61210..61288,62795..62878,62962..63060, 63272..63330,63748..63832,64100..64197,64508..64732, 64831..64923,65017..65145,65219..65272,65725..65898, 65987..66072,67532..67622,67718..67816,67934..68010, 68096..68264,68399..68490,68811..68921,69194..69299, 69373..69423,69556..69657,70117..70191,70277..70531, 70658..70726)) /locus_tag="TCM_026881" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene19021; paralog of Thecc1EG011935t6" /codon_start=1 /product="Exocyst complex component sec10 isoform 1" /protein_id="EOY25456.1" /db_xref="TAIR:AT5G12370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RVQ5" /translation="MKERSKSSSASNLPLILDIDDFKGDFSFDALFGNLVNELLPSFQ EEEADTADGHSIGGTDVLPNGHIRVSSDATKFAQGLSAPLFPEVDALLSLFKDSCREL VDLRKQIDGKLYNLKKEVSTQDAKHRKTLTELEKGVDGLFDSFARLDSRISSVGQTAA KIGDHLQSADAQRETASQTIELIKYLMEFNSSPGDLMELSPLFSDDSRVAEAASIAQK LRSFAEEDIARAVPSVVGSVTASRGLEVAVANLQEYCNELENRLLARFDAASQRRELS TMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNSDTRLVLGNQGSQASPSNVARG LSSLYKEITDTIRKEAATIMAVFPSPNDVMSILVQRVLEQRVTTLLDKLLSKPSLVNP PPIEEGGLLLYLRMLAVAYEKTQELARDLRAVGCGDLDVEGLTESLFSVHKDEYPEHE QASLRQLYQAKLEELRAESQKVSESSGTIGRSKGASVASSHQPISVAVVTEFVRWNEE AISRCTLFSSQPATLAANVKAVFTCLLDQVSQYITDGLERARDNLTEAAALRERFVLG TNLSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSISRLLLPV DGAHAASCEEMATAMSSAEGAAYKGLQQCIETVMAEVSCSLPVSSNILILLDNSMGDN YRIWVERLLSAEQKATDYCSPDDGMAPDHRPTNACTRVVAYLSRVLEAAFTALEGLNK QAFLTELGNRLHKGLLIHWQKFTFNPSGGLRLKRDITEYGEFVRSFNAPSVDEKFELL GILANVFIVAPESLSTLFEGTPSIRKDAQRFIQLREDYKSAKLASRLSSLWSSSS" CDS complement(join(61210..61288,62795..62878,62962..63060, 63272..63330,63748..63832,64100..64197,64586..64732, 64831..64923,65017..65145,65219..65275,65725..65898, 65987..66072,67532..67622,67718..67816,67934..68010, 68096..68264,68399..68490,68811..68921,69194..69299, 69373..69423,69556..69657,70117..70191,70277..70531, 70658..70726)) /locus_tag="TCM_026881" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene19021; paralog of Thecc1EG011935t6" /codon_start=1 /product="Exocyst complex component sec10 isoform 2" /protein_id="EOY25457.1" /db_xref="TAIR:AT5G12370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RVQ5" /translation="MKERSKSSSASNLPLILDIDDFKGDFSFDALFGNLVNELLPSFQ EEEADTADGHSIGGTDVLPNGHIRVSSDATKFAQGLSAPLFPEVDALLSLFKDSCREL VDLRKQIDGKLYNLKKEVSTQDAKHRKTLTELEKGVDGLFDSFARLDSRISSVGQTAA KIGDHLQSADAQRETASQTIELIKYLMEFNSSPGDLMELSPLFSDDSRVAEAASIAQK LRSFAEEDIARAVPSVVGSVTASRGLEVAVANLQEYCNELENRLLARFDAASQRRELS TMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNSDTRLVLGNQGSQASPSNVARG LSSLYKEITDTIRKEAATIMAVFPSPNDVMSILVQRVLEQRVTTLLDKLLSKPSLVNP PPIEEGGLLLYLRMLAVAYEKTQELARDLRAVGCGDLDVEGLTESLFSVHKDEYPEHE QASLRQLYQAKLEELRAESQKVSESSGTIGRSKGASVASSHQPISVAVVTEFVRWNEE AISRCTLFSSQQPATLAANVKAVFTCLLDQVSQYITDGLERARDNLTEAAALRERFVL GTNLSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSISRLLLP VDGAHAASCEEMATAMSSAEGAAYKGLQQCIETVMAEVERLLSAEQKATDYCSPDDGM APDHRPTNACTRVVAYLSRVLEAAFTALEGLNKQAFLTELGNRLHKGLLIHWQKFTFN PSGGLRLKRDITEYGEFVRSFNAPSVDEKFELLGILANVFIVAPESLSTLFEGTPSIR KDAQRFIQLREDYKSAKLASRLSSLWSSSS" mRNA complement(join(62681..62878,62958..63060,63272..63330, 63748..63832,64100..64197,64586..64732,64831..64923, 65017..65145,65219..65272,65725..65898,65987..66072, 67532..67622,67718..67816,67934..68010,68096..68264, 68399..68490,68811..68921,69194..69299,69373..69423, 69556..69657,70117..70191,70277..70535,70658..70726, 72928..73199)) /locus_tag="TCM_026881" /product="Exocyst complex component sec10 isoform 6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011935t6" /inference="similar to AA sequence:frave:gene19021" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc64t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g111t5" mRNA complement(join(<62849..62878,62962..63060,63272..63330, 63748..63832,64100..64197,64586..64732,64831..64923, 65017..65145,65219..65272,65725..65898,65987..66072, 67532..67622,67718..67816,67934..68010,68096..68264, 68399..68490,68811..68921,69194..69299,69373..69423, 69556..69657,70117..70191,70277..70486,70658..70726, 72928..73199)) /locus_tag="TCM_026881" /product="Exocyst complex component sec10 isoform 5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011935t6" /inference="similar to AA sequence:frave:gene19021" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc66t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g111t5" mRNA complement(join(<62849..62878,62962..63060,63272..63330, 63748..63832,64100..64197,64586..64732,64831..64923, 65017..65145,65219..65272,65725..65898,65987..66072, 67532..67622,67718..67816,67934..68010,68096..68264, 68399..68490,68811..68921,69194..69299,69373..69423, 69556..69657,70117..70191,70277..70533,70655..70726, 72928..73199)) /locus_tag="TCM_026881" /product="Exocyst complex component sec10 isoform 8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011935t6" /inference="similar to AA sequence:frave:gene19021" /note="transcript variant 8; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc66t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g111t5" CDS complement(join(<62851..62878,62962..63060,63272..63330, 63748..63832,64100..64197,64586..64732,64831..64923, 65017..65145,65219..65272,65725..65898,65987..66072, 67532..67622,67718..67816,67934..68010,68096..68264, 68399..68490,68811..68921,69194..69299,69373..69423, 69556..69657,70117..70191,70277..70486,70658..70726)) /locus_tag="TCM_026881" /note="encoded by transcript variant 5; alternatively spliced; dbxref frave:gene19021; paralog of Thecc1EG011935t6" /codon_start=1 /product="Exocyst complex component sec10 isoform 5" /protein_id="EOY25460.1" /db_xref="TAIR:AT5G12370.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RVQ5" /translation="MKERSKSSSASNLPLILDIDDFKLLPSFQEEEADTADGHSIGGT DVLPNGHIRVSSDATKFAQGLSAPLFPEVDALLSLFKDSCRELVDLRKQIDGKLYNLK KEVSTQDAKHRKTLTELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRET ASQTIELIKYLMEFNSSPGDLMELSPLFSDDSRVAEAASIAQKLRSFAEEDIARAVPS VVGSVTASRGLEVAVANLQEYCNELENRLLARFDAASQRRELSTMSECAKILSQFNRG TSAMQHYVATRPMFIDVEVMNSDTRLVLGNQGSQASPSNVARGLSSLYKEITDTIRKE AATIMAVFPSPNDVMSILVQRVLEQRVTTLLDKLLSKPSLVNPPPIEEGGLLLYLRML AVAYEKTQELARDLRAVGCGDLDVEGLTESLFSVHKDEYPEHEQASLRQLYQAKLEEL RAESQKVSESSGTIGRSKGASVASSHQPISVAVVTEFVRWNEEAISRCTLFSSQPATL AANVKAVFTCLLDQVSQYITDGLERARDNLTEAAALRERFVLGTNLSRRVAAAAASAA EAAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSISRLLLPVDGAHAASCEEMATAM SSAEGAAYKGLQQCIETVMAEVERLLSAEQKATDYCSPDDGMAPDHRPTNACTRVVAY LSRVLEAAFTALEGLNKQAFLTELGNRLHKGLLIHWQKFTFNPSGGLRLKRDITEYGE FVRSFNAPSVDEKFELLGILANVFIVAP" CDS complement(join(<62851..62878,62962..63060,63272..63330, 63748..63832,64100..64197,64586..64732,64831..64923, 65017..65145,65219..65272,65725..65898,65987..66072, 67532..67622,67718..67816,67934..68010,68096..68264, 68399..68490,68811..68921,69194..69293)) /locus_tag="TCM_026881" /note="encoded by transcript variant 8; alternatively spliced; dbxref frave:gene19021; paralog of Thecc1EG011935t6" /codon_start=1 /product="Exocyst complex component sec10 isoform 8" /protein_id="EOY25463.1" /db_xref="TAIR:AT5G12370.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RVQ5" /translation="MEFNSSPGDLMELSPLFSDDSRVAEAASIAQKLRSFAEEDIARA VPSVVGSVTASRGLEVAVANLQEYCNELENRLLARFDAASQRRELSTMSECAKILSQF NRGTSAMQHYVATRPMFIDVEVMNSDTRLVLGNQGSQASPSNVARGLSSLYKEITDTI RKEAATIMAVFPSPNDVMSILVQRVLEQRVTTLLDKLLSKPSLVNPPPIEEGGLLLYL RMLAVAYEKTQELARDLRAVGCGDLDVEGLTESLFSVHKDEYPEHEQASLRQLYQAKL EELRAESQKVSESSGTIGRSKGASVASSHQPISVAVVTEFVRWNEEAISRCTLFSSQP ATLAANVKAVFTCLLDQVSQYITDGLERARDNLTEAAALRERFVLGTNLSRRVAAAAA SAAEAAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSISRLLLPVDGAHAASCEEMA TAMSSAEGAAYKGLQQCIETVMAEVERLLSAEQKATDYCSPDDGMAPDHRPTNACTRV VAYLSRVLEAAFTALEGLNKQAFLTELGNRLHKGLLIHWQKFTFNPSGGLRLKRDITE YGEFVRSFNAPSVDEKFELLGILANVFIVAP" CDS complement(join(62958..63060,63272..63330,63748..63832, 64100..64197,64586..64732,64831..64923,65017..65145, 65219..65272,65725..65898,65987..66072,67532..67622, 67718..67816,67934..68010,68096..68264,68399..68490, 68811..68921,69194..69299,69373..69423,69556..69657, 70117..70191,70277..70486,70658..70726)) /locus_tag="TCM_026881" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene19021; paralog of Thecc1EG011935t6" /codon_start=1 /product="Exocyst complex component sec10 isoform 4" /protein_id="EOY25459.1" /db_xref="TAIR:AT5G12370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RVQ5" /translation="MKERSKSSSASNLPLILDIDDFKLLPSFQEEEADTADGHSIGGT DVLPNGHIRVSSDATKFAQGLSAPLFPEVDALLSLFKDSCRELVDLRKQIDGKLYNLK KEVSTQDAKHRKTLTELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRET ASQTIELIKYLMEFNSSPGDLMELSPLFSDDSRVAEAASIAQKLRSFAEEDIARAVPS VVGSVTASRGLEVAVANLQEYCNELENRLLARFDAASQRRELSTMSECAKILSQFNRG TSAMQHYVATRPMFIDVEVMNSDTRLVLGNQGSQASPSNVARGLSSLYKEITDTIRKE AATIMAVFPSPNDVMSILVQRVLEQRVTTLLDKLLSKPSLVNPPPIEEGGLLLYLRML AVAYEKTQELARDLRAVGCGDLDVEGLTESLFSVHKDEYPEHEQASLRQLYQAKLEEL RAESQKVSESSGTIGRSKGASVASSHQPISVAVVTEFVRWNEEAISRCTLFSSQPATL AANVKAVFTCLLDQVSQYITDGLERARDNLTEAAALRERFVLGTNLSRRVAAAAASAA EAAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSISRLLLPVDGAHAASCEEMATAM SSAEGAAYKGLQQCIETVMAEVERLLSAEQKATDYCSPDDGMAPDHRPTNACTRVVAY LSRVLEAAFTALEGLNKQAFLTELGNRLHKGLLIHWQKFTFNPSGGLRLKRDITEYGE FVRSFNAPSVDEKFELLGM" CDS complement(join(62958..63060,63272..63330,63748..63832, 64100..64197,64586..64732,64831..64923,65017..65145, 65219..65272,65725..65898,65987..66072,67532..67622, 67718..67816,67934..68010,68096..68264,68399..68490, 68811..68921,69194..69299,69373..69465)) /locus_tag="TCM_026881" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene19021; paralog of Thecc1EG011935t6" /codon_start=1 /product="Exocyst complex component sec10 isoform 3" /protein_id="EOY25458.1" /db_xref="TAIR:AT5G12370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RVQ5" /translation="MAFPSCIYVVFSCQSADAQRETASQTIELIKYLMEFNSSPGDLM ELSPLFSDDSRVAEAASIAQKLRSFAEEDIARAVPSVVGSVTASRGLEVAVANLQEYC NELENRLLARFDAASQRRELSTMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNS DTRLVLGNQGSQASPSNVARGLSSLYKEITDTIRKEAATIMAVFPSPNDVMSILVQRV LEQRVTTLLDKLLSKPSLVNPPPIEEGGLLLYLRMLAVAYEKTQELARDLRAVGCGDL DVEGLTESLFSVHKDEYPEHEQASLRQLYQAKLEELRAESQKVSESSGTIGRSKGASV ASSHQPISVAVVTEFVRWNEEAISRCTLFSSQPATLAANVKAVFTCLLDQVSQYITDG LERARDNLTEAAALRERFVLGTNLSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRCG SSVAIVQQYFANSISRLLLPVDGAHAASCEEMATAMSSAEGAAYKGLQQCIETVMAEV ERLLSAEQKATDYCSPDDGMAPDHRPTNACTRVVAYLSRVLEAAFTALEGLNKQAFLT ELGNRLHKGLLIHWQKFTFNPSGGLRLKRDITEYGEFVRSFNAPSVDEKFELLGM" CDS complement(join(62958..63060,63272..63330,63748..63832, 64100..64197,64586..64732,64831..64923,65017..65145, 65219..65272,65725..65898,65987..66072,67532..67622, 67718..67816,67934..68010,68096..68264,68399..68490, 68811..68921,69194..69293)) /locus_tag="TCM_026881" /note="encoded by transcript variant 6; alternatively spliced; dbxref frave:gene19021; paralog of Thecc1EG011935t6" /codon_start=1 /product="Exocyst complex component sec10 isoform 6" /protein_id="EOY25461.1" /db_xref="TAIR:AT5G12370.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RVQ5" /translation="MEFNSSPGDLMELSPLFSDDSRVAEAASIAQKLRSFAEEDIARA VPSVVGSVTASRGLEVAVANLQEYCNELENRLLARFDAASQRRELSTMSECAKILSQF NRGTSAMQHYVATRPMFIDVEVMNSDTRLVLGNQGSQASPSNVARGLSSLYKEITDTI RKEAATIMAVFPSPNDVMSILVQRVLEQRVTTLLDKLLSKPSLVNPPPIEEGGLLLYL RMLAVAYEKTQELARDLRAVGCGDLDVEGLTESLFSVHKDEYPEHEQASLRQLYQAKL EELRAESQKVSESSGTIGRSKGASVASSHQPISVAVVTEFVRWNEEAISRCTLFSSQP ATLAANVKAVFTCLLDQVSQYITDGLERARDNLTEAAALRERFVLGTNLSRRVAAAAA SAAEAAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSISRLLLPVDGAHAASCEEMA TAMSSAEGAAYKGLQQCIETVMAEVERLLSAEQKATDYCSPDDGMAPDHRPTNACTRV VAYLSRVLEAAFTALEGLNKQAFLTELGNRLHKGLLIHWQKFTFNPSGGLRLKRDITE YGEFVRSFNAPSVDEKFELLGM" CDS complement(join(62958..63060,63272..63330,63748..63832, 64100..64197,64586..64732,64831..64923,65017..65145, 65219..65272,65725..65898,65987..66072,67532..67622, 67718..67816,67934..68010,68096..68264,68399..68490, 68811..68921,69194..69293)) /locus_tag="TCM_026881" /note="encoded by transcript variant 9; alternatively spliced; dbxref frave:gene19021; paralog of Thecc1EG011935t6" /codon_start=1 /product="Exocyst complex component sec10 isoform 6" /protein_id="EOY25464.1" /db_xref="TAIR:AT5G12370.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RVQ5" /translation="MEFNSSPGDLMELSPLFSDDSRVAEAASIAQKLRSFAEEDIARA VPSVVGSVTASRGLEVAVANLQEYCNELENRLLARFDAASQRRELSTMSECAKILSQF NRGTSAMQHYVATRPMFIDVEVMNSDTRLVLGNQGSQASPSNVARGLSSLYKEITDTI RKEAATIMAVFPSPNDVMSILVQRVLEQRVTTLLDKLLSKPSLVNPPPIEEGGLLLYL RMLAVAYEKTQELARDLRAVGCGDLDVEGLTESLFSVHKDEYPEHEQASLRQLYQAKL EELRAESQKVSESSGTIGRSKGASVASSHQPISVAVVTEFVRWNEEAISRCTLFSSQP ATLAANVKAVFTCLLDQVSQYITDGLERARDNLTEAAALRERFVLGTNLSRRVAAAAA SAAEAAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSISRLLLPVDGAHAASCEEMA TAMSSAEGAAYKGLQQCIETVMAEVERLLSAEQKATDYCSPDDGMAPDHRPTNACTRV VAYLSRVLEAAFTALEGLNKQAFLTELGNRLHKGLLIHWQKFTFNPSGGLRLKRDITE YGEFVRSFNAPSVDEKFELLGM" mRNA complement(join(63038..63077,63272..63330,63748..63832, 64100..64197,64586..64732,64831..64923,65017..65145, 65219..65272,65725..65898,65987..66072,67532..67622, 67718..67816,67934..68010,68096..68264,68399..68490, 68811..68921,69194..69299,69373..69423,69556..69657, 70117..70191,70277..70531,70658..70726,72928..73199)) /locus_tag="TCM_026881" /product="Exocyst complex component sec10 isoform 7" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011935t6" /inference="similar to AA sequence:frave:gene19021" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc64t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g111t5" CDS complement(join(63068..63077,63272..63330,63748..63832, 64100..64197,64586..64732,64831..64923,65017..65145, 65219..65272,65725..65898,65987..66072,67532..67622, 67718..67816,67934..68010,68096..68264,68399..68490, 68811..68921,69194..69299,69373..69423,69556..69657, 70117..70191,70277..70531,70658..70726)) /locus_tag="TCM_026881" /note="encoded by transcript variant 7; alternatively spliced; dbxref frave:gene19021; paralog of Thecc1EG011935t6" /codon_start=1 /product="Exocyst complex component sec10 isoform 7" /protein_id="EOY25462.1" /db_xref="TAIR:AT5G12370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RVQ5" /translation="MKERSKSSSASNLPLILDIDDFKGDFSFDALFGNLVNELLPSFQ EEEADTADGHSIGGTDVLPNGHIRVSSDATKFAQGLSAPLFPEVDALLSLFKDSCREL VDLRKQIDGKLYNLKKEVSTQDAKHRKTLTELEKGVDGLFDSFARLDSRISSVGQTAA KIGDHLQSADAQRETASQTIELIKYLMEFNSSPGDLMELSPLFSDDSRVAEAASIAQK LRSFAEEDIARAVPSVVGSVTASRGLEVAVANLQEYCNELENRLLARFDAASQRRELS TMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNSDTRLVLGNQGSQASPSNVARG LSSLYKEITDTIRKEAATIMAVFPSPNDVMSILVQRVLEQRVTTLLDKLLSKPSLVNP PPIEEGGLLLYLRMLAVAYEKTQELARDLRAVGCGDLDVEGLTESLFSVHKDEYPEHE QASLRQLYQAKLEELRAESQKVSESSGTIGRSKGASVASSHQPISVAVVTEFVRWNEE AISRCTLFSSQPATLAANVKAVFTCLLDQVSQYITDGLERARDNLTEAAALRERFVLG TNLSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSISRLLLPV DGAHAASCEEMATAMSSAEGAAYKGLQQCIETVMAEVERLLSAEQKATDYCSPDDGMA PDHRPTNACTRVVAYLSRVLEAAFTALEGLNKQAFLTELGNRLHKGLLIHWQKFTFNP SMH" mobile_element 75923..78864 /note="source:CACAO_M_E57385_F197_scaffold_9 1805 4720" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(81413..83098) /note="source:INTACT349_F203_scaffold_6-int 11791 13514" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 83105..85219 /note="source:CACAO_hAT_E2551_scaffold_6 1 2115" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(85252..85359) /note="source:INTACT349_F203_scaffold_6-int 11629 11727" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(92461..96513) /note="source:INTACT384F_F20_scaffold_3-int 5902 10056" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 97686..104871 /locus_tag="TCM_026888" /note="dbxref CacaoGD:Thecc1EG026888" mRNA join(97686..98097,98647..98719,98796..98827,99505..99634, 99864..99972,101255..101354,101897..101975,102078..102249, 102338..102418,102597..102771,103215..103242, 103329..103419,104169..104217,104294..104824) /locus_tag="TCM_026888" /product="Histone-lysine N-methyltransferase ASHH3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s00210.1" /inference="similar to AA sequence:Phytozome:POPTR_0007s00210.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g99t5" CDS join(97750..98097,98647..98719,98796..98827,99505..99634, 99864..99972,101255..101354,101897..101975,102078..102249, 102338..102418,102597..102771,103215..103242, 103329..103419,104169..104217,104294..104365) /locus_tag="TCM_026888" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Histone-lysine N-methyltransferase ASHH3 isoform 1" /protein_id="EOY25465.1" /db_xref="Phytozome:POPTR_0007s00210.1" /db_xref="TAIR:AT2G44150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HE89" /translation="MVIIKPNPNFSLFYINRRYQLHLPSSVPRHSFPSSISISVFLFL VLPLSLGPSQPSSFHSFLSEPSFQPFFLAFTGAARPLPFLSFFALISRLPLSLTSFPF GPVPSLSRVSLLWKIFFVVKILEAMPATKKVSLHIFACSYARKFIYFDTSSDCSHIGY AFGKLLKQIGNPVDFELPDWFNKWKPTPYTFIRRNIYLTKKIKRRLEDDGIFCSCTSS PGSSVCGRDCHCGMLLSSCSSGCSCGSLCLNKPFQHQPVKKMKLVQTEKCGAGIVADE DIKHGEFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRY INHSCCPNTEMQKWIIDGETRIGIFAMQDIKKGEHLTYDYQFVQFGADQDCHCGAAGC RQKLGVKPSKPKMSSDAALKLVACQVAVSSPKLKAVLSGKDVNQNGGLPVGSSRHAHN RRQIHSRCCIGEVIKISRSINDRSFGIIKRFDKYSNKHSVMFEDGVVEFLDMSKEDWE LVTL" mRNA join(<97852..98097,98647..98694,99505..99634,99864..99972, 101255..101354,101897..101975,102078..102249, 102338..102418,102597..102771,103215..103242, 103329..103419,104166..104217,104294..104871) /locus_tag="TCM_026888" /product="Histone-lysine N-methyltransferase ASHH3 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400007632" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s00210.1" /inference="similar to AA sequence:Phytozome:POPTR_0007s00210.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g99t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g99t5; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc311t11" mRNA join(<97852..98097,98647..98694,99505..99634,99864..99972, 101255..101354,101897..101975,102078..102249, 102338..102418,102597..102771,103215..103242, 103329..103419,104169..104217,104294..104871) /locus_tag="TCM_026888" /product="Histone-lysine N-methyltransferase ASHH3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400007632" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s00210.1" /inference="similar to AA sequence:Phytozome:POPTR_0007s00210.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g99t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g99t5; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc311t11" mRNA join(<97852..98097,98647..98694,99505..99634,99864..99972, 101255..101354,101897..101975,102078..102249, 102338..102418,102597..102771,103215..103242, 103333..103419,104169..104219,104294..104871) /locus_tag="TCM_026888" /product="Histone-lysine N-methyltransferase ASHH3 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400007632" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s00210.1" /inference="similar to AA sequence:Phytozome:POPTR_0007s00210.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g99t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g99t5; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc311t11" CDS join(<97852..98097,98647..98694,99505..99634,99864..99972, 101255..101354,101897..101975,102078..102249, 102338..102418,102597..102771,103215..103242, 103329..103419,104166..104217,104294..104365) /locus_tag="TCM_026888" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Histone-lysine N-methyltransferase ASHH3 isoform 4" /protein_id="EOY25468.1" /db_xref="Phytozome:POPTR_0007s00210.1" /db_xref="TAIR:AT2G44150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HE89" /translation="SISISVFLFLVLPLSLGPSQPSSFHSFLSEPSFQPFFLAFTGAA RPLPFLSFFALISRLPLSLTSFPFGPVPSLSRVSLLWKIFFVVKILEAMPATKKSSDC SHIGYAFGKLLKQIGNPVDFELPDWFNKWKPTPYTFIRRNIYLTKKIKRRLEDDGIFC SCTSSPGSSVCGRDCHCGMLLSSCSSGCSCGSLCLNKPFQHQPVKKMKLVQTEKCGAG IVADEDIKHGEFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKG NKSRYINHSCCPNTEMQKWIIDGETRIGIFAMQDIKKGEHLTYDYQFVQFGADQDCHC GAAGCRQKLGVKPSKPKMSSDAALKLVACQVAVSSPKLKAVLSGKDVNQNGGLPVGSS RHAHNRRQIHSRCCIGEVIKISRSINDSRSFGIIKRFDKYSNKHSVMFEDGVVEFLDM SKEDWELVTL" CDS join(<97852..98097,98647..98694,99505..99634,99864..99972, 101255..101354,101897..101975,102078..102249, 102338..102418,102597..102771,103215..103242, 103329..103419,104169..104217,104294..104365) /locus_tag="TCM_026888" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Histone-lysine N-methyltransferase ASHH3 isoform 2" /protein_id="EOY25466.1" /db_xref="Phytozome:POPTR_0007s00210.1" /db_xref="TAIR:AT2G44150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HE89" /translation="SISISVFLFLVLPLSLGPSQPSSFHSFLSEPSFQPFFLAFTGAA RPLPFLSFFALISRLPLSLTSFPFGPVPSLSRVSLLWKIFFVVKILEAMPATKKSSDC SHIGYAFGKLLKQIGNPVDFELPDWFNKWKPTPYTFIRRNIYLTKKIKRRLEDDGIFC SCTSSPGSSVCGRDCHCGMLLSSCSSGCSCGSLCLNKPFQHQPVKKMKLVQTEKCGAG IVADEDIKHGEFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKG NKSRYINHSCCPNTEMQKWIIDGETRIGIFAMQDIKKGEHLTYDYQFVQFGADQDCHC GAAGCRQKLGVKPSKPKMSSDAALKLVACQVAVSSPKLKAVLSGKDVNQNGGLPVGSS RHAHNRRQIHSRCCIGEVIKISRSINDRSFGIIKRFDKYSNKHSVMFEDGVVEFLDMS KEDWELVTL" CDS join(<97852..98097,98647..98694,99505..99634,99864..99972, 101255..101354,101897..101975,102078..102249, 102338..102418,102597..102771,103215..103242, 103333..103391) /locus_tag="TCM_026888" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Histone-lysine N-methyltransferase ASHH3 isoform 3" /protein_id="EOY25467.1" /db_xref="Phytozome:POPTR_0007s00210.1" /db_xref="TAIR:AT2G44150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HE89" /translation="SISISVFLFLVLPLSLGPSQPSSFHSFLSEPSFQPFFLAFTGAA RPLPFLSFFALISRLPLSLTSFPFGPVPSLSRVSLLWKIFFVVKILEAMPATKKSSDC SHIGYAFGKLLKQIGNPVDFELPDWFNKWKPTPYTFIRRNIYLTKKIKRRLEDDGIFC SCTSSPGSSVCGRDCHCGMLLSSCSSGCSCGSLCLNKPFQHQPVKKMKLVQTEKCGAG IVADEDIKHGEFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKG NKSRYINHSCCPNTEMQKWIIDGETRIGIFAMQDIKKGEHLTYDYQFVQFGADQDCHC GAAGCRQKLGVKPSKPKMSSDAALKLVACQVAVSSPKLKAVLSGKDVNQNGGLPVVLG MLIIDDRYTLDVALVK" mobile_element 105936..107889 /note="source:INTACT384F_F20_scaffold_3-int 601 2571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 107890..110986 /note="source:CACAO_M_E33018_F264_scaffold_4 1 3140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(110230..111536) /note="source:INTACT591_F264_scaffold_1-int 5164 6430" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 111427..111550 /note="source:CACAO_M_E49195_F17_scaffold_6 3379 3489" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 111562..117876 /note="source:INTACT384F_F20_scaffold_3-int 4593 9642" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(115894..118022) /note="source:CACAO_M_S_E84604_F20_scaffold_6 3347 5445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 119661..120479 /note="source:CACAO_M_E70107_F62_scaffold_10 1 815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 120480..121556 /note="source:CACAO_M_S_E66720_F12_scaffold_6 1 1077" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(121557..124160) /note="source:INTACT271_F62_scaffold_5-int 2061 4687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(125778..129166) /note="source:scaffold_5_CACTA_0611 9247 12670" /mobile_element_type="transposon:TIR/CACTA" mobile_element 131495..132503 /note="source:CACAO_M_E44268_F42_scaffold_6 1 1009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 134093..134606 /note="source:CACAO_M_E44268_F42_scaffold_6 1010 1523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 137751..139277 /note="source:CACAO_M_E44269_F17_scaffold_6 1 1527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(146567..146607) /note="source:CACAO_M_E9395_F12_scaffold_2 7210 7250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 150045..150109 /note="source:CACAO_M_E12463_F12_scaffold_3 4536 4602" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(150073..150150) /note="source:scaffold_6_CACTA_0712 1286 1357" /mobile_element_type="transposon:TIR/CACTA" gene 153968..162299 /locus_tag="TCM_026893" /note="dbxref CacaoGD:Thecc1EG026893" mRNA join(153968..154480,155341..155370,156503..156587, 156717..156915,157934..158055,158598..158664, 159377..159427,160002..160054,160194..160404, 161136..161306,161616..161781) /locus_tag="TCM_026893" /product="Acyl-CoA N-acyltransferase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s23700.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s23700.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc27t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g23t2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc28t7_C2" mRNA join(153968..154480,155341..155370,156503..156587, 156717..156915,157934..158055,158598..158664, 159377..159427,160002..160054,160194..160404, 161136..161306,161697..161781) /locus_tag="TCM_026893" /product="Acyl-CoA N-acyltransferase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s23700.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s23700.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc27t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g23t2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc28t7_C2" mRNA join(154111..154480,155341..155487,155599..155781, 156505..156587,156717..156915,157934..158055, 158598..158664,159377..159427,160002..160054, 160194..160404,161136..161306,161616..162299) /locus_tag="TCM_026893" /product="Acyl-CoA N-acyltransferase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s23700.1" /inference="similar to AA sequence:Phytozome:GSVIVT01023154001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g23t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g23t2" CDS join(154412..154480,155341..155487,155599..155781, 156505..156587,156717..156915,157934..158055, 158598..158664,159377..159427,160002..160054, 160194..160404,161136..161306,161616..161675) /locus_tag="TCM_026893" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferase isoform 1" /protein_id="EOY25469.1" /db_xref="Phytozome:GSVIVT01023154001" /db_xref="TAIR:AT2G23390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8J0L7" /translation="MAAAAVLSYCKPSPFIGQFPSSFGKSVSSQSFEISTQASRVTAL FWGSKKSVKSQPLDSSLGDFTLIGAGTEEATGNQARGKKISVSIISSIMEVSPHEWDA CTLDATGPEKFNPFLTHGFLSSLEETGCAVKETGWMPSHVIANDESENILGVVPLYLK SHSYGEFVFDHSWAYAYYSFGSRYYPKFQCCVPFTPVTGPRILIRNTSFKDQVFDIIV SALKDLTAKSQVSSLHITFPSETEWEKLKDKGFLQRIGMQYHWKNRNYKCFDEFLMDM KQSKRKNIRQERKKISAQNLTMKRLRGYEIKASHWDSFYKFYRNTTANKWGSPYLTGD FFHEMGSKMGDQVLLVVAEEGDEVVAGALNLIGGDTLFGRLWGCHPQVHYPSLHFEAC YYQAIEAAIELNLSTVEAGAQGEHKIQRGYVPVTTYSCHYLMDEGFRKAIEDFLERES CQVRLVMKLLNDSGPFKEGIH" CDS join(156517..156587,156717..156915,157934..158055, 158598..158664,159377..159427,160002..160054, 160194..160404,161136..161306,161697..161747) /locus_tag="TCM_026893" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferase isoform 3" /protein_id="EOY25471.1" /db_xref="Phytozome:POPTR_0004s23700.1" /db_xref="TAIR:AT2G23390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8J0L7" /translation="MPSHVIANDESENILGVVPLYLKSHSYGEFVFDHSWAYAYYSFG SRYYPKFQCCVPFTPVTGPRILIRNTSFKDQVFDIIVSALKDLTAKSQVSSLHITFPS ETEWEKLKDKGFLQRIGMQYHWKNRNYKCFDEFLMDMKQSKRKNIRQERKKISAQNLT MKRLRGYEIKASHWDSFYKFYRNTTANKWGSPYLTGDFFHEMGSKMGDQVLLVVAEEG DEVVAGALNLIGGDTLFGRLWGCHPQVHYPSLHFEACYYQAIEAAIELNLSTVEAGAQ GEHKIQRGYVPVTTYSCHYLMDEGFRKAIEDFLERESCQRKQQIHWCFPAKYVNW" CDS join(156517..156587,156717..156915,157934..158055, 158598..158664,159377..159427,160002..160054, 160194..160404,161136..161306,161616..161675) /locus_tag="TCM_026893" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferase isoform 2" /protein_id="EOY25470.1" /db_xref="Phytozome:POPTR_0004s23700.1" /db_xref="TAIR:AT2G23390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8J0L7" /translation="MPSHVIANDESENILGVVPLYLKSHSYGEFVFDHSWAYAYYSFG SRYYPKFQCCVPFTPVTGPRILIRNTSFKDQVFDIIVSALKDLTAKSQVSSLHITFPS ETEWEKLKDKGFLQRIGMQYHWKNRNYKCFDEFLMDMKQSKRKNIRQERKKISAQNLT MKRLRGYEIKASHWDSFYKFYRNTTANKWGSPYLTGDFFHEMGSKMGDQVLLVVAEEG DEVVAGALNLIGGDTLFGRLWGCHPQVHYPSLHFEACYYQAIEAAIELNLSTVEAGAQ GEHKIQRGYVPVTTYSCHYLMDEGFRKAIEDFLERESCQVRLVMKLLNDSGPFKEGIH " gene complement(162421..165968) /locus_tag="TCM_026895" /note="dbxref CacaoGD:Thecc1EG026895" mRNA complement(join(162421..163449,165259..165968)) /locus_tag="TCM_026895" /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G10280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009590t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s00960.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1459t1" CDS complement(join(162808..163449,165259..165789)) /locus_tag="TCM_026895" /note="paralog of Thecc1EG009590t1" /codon_start=1 /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein" /protein_id="EOY25472.1" /db_xref="Phytozome:POPTR_0003s00960.1" /db_xref="TAIR:AT1G10280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SY70" /translation="MPRGRGEDGERHMGLLKLVQVLSFLVVFVAGIIIGLATSSHINT YFSSQAQAQLFSTSTATSFRVSSGTTKANCSQKVDCFSMDAFLHPTNLSHKMSDEELF WRASMAPYKNEFPFPRVPKVAFMFLTRGPLPLLPLWERFFKGHEKYFSIYLHTPPAYH LNVSSHSPFYGRQIPSQNVEWGTVLLADAERRLLANALLDFSNERFVLLSESCIPVYN FPTVYKYLIGSTYSFVESYDDPSRYGRGRYSRKMLPDIKLYQWRKGSQWFEMHRLVAI YIISDTKYYTLFRKYCRPACYPDEHYIPTFLNMFHGSLNANRSVTWVDWSMGGPHPAM HGGANITEGFIQAIRKNGTLCSYNEEQTSACYLFARKFAPSALESLLNLSSTVMEF" gene 175273..178419 /locus_tag="TCM_026896" /note="dbxref CacaoGD:Thecc1EG026896" mRNA join(175273..175442,176981..177156,178112..178419) /locus_tag="TCM_026896" /product="Chloride channel C-like protein" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(175412..175442,176981..177156,178112..178390) /locus_tag="TCM_026896" /codon_start=1 /product="Chloride channel C-like protein" /protein_id="EOY25473.1" /db_xref="TAIR:AT5G49890.1" /translation="MPASFRALIMNIIRYLPHILVVTWFWLLLLSPSTYIAPATASSG IPKVKAYFHGVDAPSILVPITCFAKVAECLTLVDIFYNSYCSNGVRGFIDFCHSGKCG LCGQGGLIMFDVNSTNPNYSVLELVAIIFLWIIGGVLGSLYNYFVDKVLRTYSIINKY V" mobile_element complement(180554..183522) /note="source:CACAO_M_E10603_F306_scaffold_2 4817 7769" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 184441..198875 /locus_tag="TCM_026898" /note="dbxref CacaoGD:Thecc1EG026898" mRNA join(184441..185175,186149..186199,186279..186399, 186565..186657,188386..188447,188590..188707, 188836..189178,189955..190102,190314..190415, 190514..190633,191057..191140,191212..191339, 191508..191592,191712..191850,193187..193263, 193414..193470,195189..195336,195417..195565, 196469..196582,196661..196728,197206..197378, 197677..198875) /locus_tag="TCM_026898" /product="Dynamin-like 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s00930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036323t1" /inference="similar to AA sequence:Phytozome:GSVIVT01023155001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g83t3" mRNA join(184740..185175,186149..186199,186279..186399, 186565..186657,188386..188447,188590..188707, 188836..189178,189955..190102,190314..190415, 190514..190633,191057..191140,191212..191339, 191508..191592,191712..191850,193187..193263, 193414..193470,195189..195334,195416..195565, 196469..196582,196661..196728,197206..197371, 197671..198328) /locus_tag="TCM_026898" /product="Dynamin-2A, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s00930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036323t3" /inference="similar to AA sequence:Phytozome:GSVIVT01023155001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc166t12; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g83t3" mRNA join(184740..185175,186149..186199,186279..186399, 186565..186657,188386..188447,188590..188707, 188836..189178,189955..190102,190314..190415, 190514..190633,191057..191140,191212..191339, 191508..191592,191712..191850,193187..193263, 193414..193470,195189..195334,195416..195565, 196469..196582,196661..196728,197206..197366, 197677..198328) /locus_tag="TCM_026898" /product="Dynamin-2A, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s00930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036323t3" /inference="similar to AA sequence:Phytozome:GSVIVT01023155001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc166t3; alternateUTRof:Thecc1EG026898t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g83t3" mRNA join(184828..185175,186149..186199,186279..186399, 186565..186657,188386..188447,188590..188707, 188836..189178,189955..190102,190314..190415, 190514..190633,191057..191140,191212..191339, 191508..191592,191712..191850,193187..193263, 193414..193471,195189..195336,195417..195565, 196469..196582,196659..196728,197206..197378, 197674..198318) /locus_tag="TCM_026898" /product="Dynamin-2A, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s00930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036323t2" /inference="similar to AA sequence:Phytozome:GSVIVT01023155001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g83t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g83t3" CDS join(185029..185175,186149..186199,186279..186399, 186565..186657,188386..188447,188590..188707, 188836..189178,189955..190102,190314..190415, 190514..190633,191057..191140,191212..191339, 191508..191592,191712..191850,193187..193263, 193414..193470,195189..195336,195417..195565, 196469..196582,196661..196728,197206..197378, 197677..197912) /locus_tag="TCM_026898" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG036323t1" /codon_start=1 /product="Dynamin-like 3 isoform 1" /protein_id="EOY25474.1" /db_xref="Phytozome:GSVIVT01023155001" /db_xref="TAIR:AT1G59610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LQ55" /translation="MEAIEELAELSESMRQAAAILADEDVDETSSSSSKRSSTFLNVV ALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLARDGSLSSKSIILQIDNKSQ QVSASALRHSLQDRLSKGSSGRSRDEIYLKLRTSTAPPLKLIDLPGLEQRIVDDSLVR EYVEHNDAILLVIVPAAQAPEISSSRALRIAKEYDSEGTRTVGIISKIDQAASDSKAL AAVQALLSNQGPPKTSDIPWVALIGQSVSIASAQSGSASSDNSLETAWRAENESLKSI LTGAPQSKLGRVALVDTLAGQIRNRMKLRLPNLLSGLQGKSQIVQDELLRLGEQMVST AEGTRAIALELCREFEDKFLQHITGGEGNGWKIVASFEGSFPNRIKQLPLDRHFDINN VKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLLDIVSAAANA TPGLGRYAPFKREVVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRME RQRREEELKNRSSKKALDAEQSILNRATSPQTGGQQSEGSLKTLKDKSSKQEKDVQEG SALKTAGPGGEITAGFLLKKSGKTNGWSRRWFVLNEKTGKFGYTKKQEERHFRGVITL EECNIEEVADDESGSSKSSKDKKANGPDSGKGPSLVFKITSRVPYKTVLKAHSAVLLK AESTADKVEWLERLRNVVESKGGQVKGESAPPMRQSLSDGSLDTMARRPADPEEELRW MSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLIQLYSSVSAISNARIEELLQE DQNAKRRRERYQKQSSLLSKLTRLLSIHDNRAAAASSWSNGSVAENSPRASGPSSGED WRSAFDAAANGPVESSRYGANGHSRRYSDPAQNGDVGSGSSSGSRRTPTRLPPAPPQS ASSYRY" CDS join(185029..185175,186149..186199,186279..186399, 186565..186657,188386..188447,188590..188707, 188836..189178,189955..190102,190314..190415, 190514..190633,191057..191140,191212..191339, 191508..191592,191712..191850,193187..193263, 193414..193470,195189..195334,195416..195437) /locus_tag="TCM_026898" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG036323t3" /codon_start=1 /product="Dynamin-2A, putative isoform 2" /protein_id="EOY25475.1" /db_xref="Phytozome:GSVIVT01023155001" /db_xref="TAIR:AT1G59610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SPD8" /translation="MEAIEELAELSESMRQAAAILADEDVDETSSSSSKRSSTFLNVV ALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLARDGSLSSKSIILQIDNKSQ QVSASALRHSLQDRLSKGSSGRSRDEIYLKLRTSTAPPLKLIDLPGLEQRIVDDSLVR EYVEHNDAILLVIVPAAQAPEISSSRALRIAKEYDSEGTRTVGIISKIDQAASDSKAL AAVQALLSNQGPPKTSDIPWVALIGQSVSIASAQSGSASSDNSLETAWRAENESLKSI LTGAPQSKLGRVALVDTLAGQIRNRMKLRLPNLLSGLQGKSQIVQDELLRLGEQMVST AEGTRAIALELCREFEDKFLQHITGGEGNGWKIVASFEGSFPNRIKQLPLDRHFDINN VKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLLDIVSAAANA TPGLGRYAPFKREVVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRME RQRREEELKNRSSKKALDAEQSILNRATSPQTGGQQSEGSLKTLKDKSSKQEKDVQEG SALKTAGPGGEITAGFLLKKSGKTNGWSRRWFVLNEKTGKFGYTKKQEERHFRGVITL EECNIEEVADDESGSSKSSKDKKANGPDSGKGPSLVFKITSRVPYKTVLKLTVLCC" CDS join(185029..185175,186149..186199,186279..186399, 186565..186657,188386..188447,188590..188707, 188836..189178,189955..190102,190314..190415, 190514..190633,191057..191140,191212..191339, 191508..191592,191712..191850,193187..193263, 193414..193470,195189..195334,195416..195437) /locus_tag="TCM_026898" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG036323t3" /codon_start=1 /product="Dynamin-2A, putative isoform 2" /protein_id="EOY25476.1" /db_xref="Phytozome:GSVIVT01023155001" /db_xref="TAIR:AT1G59610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SPD8" /translation="MEAIEELAELSESMRQAAAILADEDVDETSSSSSKRSSTFLNVV ALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLARDGSLSSKSIILQIDNKSQ QVSASALRHSLQDRLSKGSSGRSRDEIYLKLRTSTAPPLKLIDLPGLEQRIVDDSLVR EYVEHNDAILLVIVPAAQAPEISSSRALRIAKEYDSEGTRTVGIISKIDQAASDSKAL AAVQALLSNQGPPKTSDIPWVALIGQSVSIASAQSGSASSDNSLETAWRAENESLKSI LTGAPQSKLGRVALVDTLAGQIRNRMKLRLPNLLSGLQGKSQIVQDELLRLGEQMVST AEGTRAIALELCREFEDKFLQHITGGEGNGWKIVASFEGSFPNRIKQLPLDRHFDINN VKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLLDIVSAAANA TPGLGRYAPFKREVVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRME RQRREEELKNRSSKKALDAEQSILNRATSPQTGGQQSEGSLKTLKDKSSKQEKDVQEG SALKTAGPGGEITAGFLLKKSGKTNGWSRRWFVLNEKTGKFGYTKKQEERHFRGVITL EECNIEEVADDESGSSKSSKDKKANGPDSGKGPSLVFKITSRVPYKTVLKLTVLCC" CDS join(185029..185175,186149..186199,186279..186399, 186565..186657,188386..188447,188590..188707, 188836..189178,189955..190102,190314..190415, 190514..190633,191057..191140,191212..191339, 191508..191592,191712..191850,193187..193263, 193414..193471,195189..195202) /locus_tag="TCM_026898" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG036323t2" /codon_start=1 /product="Dynamin-2A, putative isoform 4" /protein_id="EOY25477.1" /db_xref="Phytozome:GSVIVT01023155001" /db_xref="TAIR:AT1G59610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SPD8" /translation="MEAIEELAELSESMRQAAAILADEDVDETSSSSSKRSSTFLNVV ALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLARDGSLSSKSIILQIDNKSQ QVSASALRHSLQDRLSKGSSGRSRDEIYLKLRTSTAPPLKLIDLPGLEQRIVDDSLVR EYVEHNDAILLVIVPAAQAPEISSSRALRIAKEYDSEGTRTVGIISKIDQAASDSKAL AAVQALLSNQGPPKTSDIPWVALIGQSVSIASAQSGSASSDNSLETAWRAENESLKSI LTGAPQSKLGRVALVDTLAGQIRNRMKLRLPNLLSGLQGKSQIVQDELLRLGEQMVST AEGTRAIALELCREFEDKFLQHITGGEGNGWKIVASFEGSFPNRIKQLPLDRHFDINN VKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLLDIVSAAANA TPGLGRYAPFKREVVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRME RQRREEELKNRSSKKALDAEQSILNRATSPQTGGQQSEGSLKTLKDKSSKQEKDVQEG SALKTAGPGGEITAGFLLKKSGKTNGWSRRWFVLNEKTGKFGYTKKQEERHFRGVITL EGMQH" mobile_element complement(192330..192384) /note="source:CACAO_M_S_E4863_F51_scaffold_1 5678 5737" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 199031..204567 /locus_tag="TCM_026899" /note="dbxref CacaoGD:Thecc1EG026899" mRNA join(199031..199694,200010..200352,200690..200914, 201216..201444,202233..202411,203268..203333, 204128..204477) /locus_tag="TCM_026899" /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s03960.2" /inference="similar to AA sequence:Phytozome:GSVIVT01021618001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05467t00001" CDS join(199273..199694,200010..200352,200690..200914, 201216..201444,202233..202411,203268..203333, 204128..204205) /locus_tag="TCM_026899" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 1" /protein_id="EOY25478.1" /db_xref="Phytozome:GSVIVT01021618001" /db_xref="TAIR:AT4G05410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M0V4" /translation="MKSKNENKRVSAPKGGQKGGKFSMNNGPFFEAESKKRRKTEYED DDIESGDSEEEAEILGGFDASGGVEEDEDDVETPGEIRKRVATELLDKMRAIARKEKE DEDEDWEEGEEARDSVVAKILQQEQLEESGRARRVLASRLKKPETTDGFKVLVKHQQS VTAVALSDDDLKGFSASKDGTILQWDVESGKSAKYQWPSEDILKSHGAKDPRGRVKKH SRNVLALAVSSDGRYLASGGLDRHVHLWDIRTREHLQAFPGHQKPVSCLSFRQGTADL FSGSFDRTVKYWNMEDRAYIDTIYGHESEVLTLDCLRKERVLTVGRDRCMMLFKVLDQ SRLVFRPPPSSLECCCFVNNDEFLSGSDDGSIELWSIGRKKPVYIVKNAHALLPACQN VEQKGSEKIPNIRLENGDHKIESYSSSSTYSWVSSITVCRGSDLAASGAGNGCIQLWA IESGRKDIQPLYGIPLVGFVNSLAFANSGQFLIAGVGQEPRLGRWGRHPTARNGVAIQ SLKLL" mRNA join(<199669..199701,200010..200352,200690..200914, 201216..201444,202233..202411,203268..203333, 204128..204567) /locus_tag="TCM_026899" /product="U3 small nucleolar RNA-interacting protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s03960.2" /inference="similar to AA sequence:Phytozome:GSVIVT01021618001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc98t3; inference alignment:Newbler:10:TSA:cgbaP2_g05467t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc83t12_C1" CDS join(<199670..199701,200010..200352,200690..200914, 201216..201444,202233..202411,203268..203333, 204128..204205) /locus_tag="TCM_026899" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="U3 small nucleolar RNA-interacting protein, putative isoform 2" /protein_id="EOY25479.1" /db_xref="Phytozome:GSVIVT01021618001" /db_xref="TAIR:AT4G05410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0S6" /translation="GQGESLLPGKKLKKPETTDGFKVLVKHQQSVTAVALSDDDLKGF SASKDGTILQWDVESGKSAKYQWPSEDILKSHGAKDPRGRVKKHSRNVLALAVSSDGR YLASGGLDRHVHLWDIRTREHLQAFPGHQKPVSCLSFRQGTADLFSGSFDRTVKYWNM EDRAYIDTIYGHESEVLTLDCLRKERVLTVGRDRCMMLFKVLDQSRLVFRPPPSSLEC CCFVNNDEFLSGSDDGSIELWSIGRKKPVYIVKNAHALLPACQNVEQKGSEKIPNIRL ENGDHKIESYSSSSTYSWVSSITVCRGSDLAASGAGNGCIQLWAIESGRKDIQPLYGI PLVGFVNSLAFANSGQFLIAGVGQEPRLGRWGRHPTARNGVAIQSLKLL" gene 205541..223094 /locus_tag="TCM_026900" /note="dbxref CacaoGD:Thecc1EG026900" mRNA join(205541..205638,205993..206616,207626..207729, 210183..210269,210356..210431,210529..210603, 210738..210791,212112..212174,212521..212580, 212857..212973,215528..215622,215729..215931, 216228..216325,216542..216645,216726..216891, 217000..217122,217907..217989,220033..220174, 221210..221239,221586..221656,221794..223094) /locus_tag="TCM_026900" /product="SIT4 phosphatase-associated family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30075.m001189.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042064t2" /inference="similar to AA sequence:ricco:30075.m001189" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g155t4" mRNA join(206315..206616,207626..207729,210183..210269, 210356..210431,210529..210603,210738..210791, 212521..212580,212857..212973,215528..215622, 215729..215931,216228..216325,216542..216645, 216726..216891,217000..217122,217904..217989, 220033..220174,221210..221239,221586..221656, 221794..222958) /locus_tag="TCM_026900" /product="SIT4 phosphatase-associated family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30075.m001189.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042064t2" /inference="similar to AA sequence:ricco:30075.m001189" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g155t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g155t4" mRNA join(206315..206616,207626..207729,210183..210269, 210356..210431,210529..210603,210738..210791, 212521..212580,212857..212973,215528..215622, 215729..215931,216228..216325,216542..216645, 216726..216891,217000..217122,217907..217989, 220033..220174,221210..221239,221586..221656, 221794..222958) /locus_tag="TCM_026900" /product="SIT4 phosphatase-associated family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30075.m001189.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042064t2" /inference="similar to AA sequence:ricco:30075.m001189" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g155t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g155t4" CDS join(206578..206616,207626..207729,210183..210269, 210356..210431,210529..210603,210738..210791, 212112..212174,212521..212580,212857..212973, 215528..215622,215729..215931,216228..216325, 216542..216645,216726..216891,217000..217122, 217907..217989,220033..220174,221210..221239, 221586..221656,221794..222412) /locus_tag="TCM_026900" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30075.m001189; paralog of Thecc1EG042064t2" /codon_start=1 /product="SIT4 phosphatase-associated family protein isoform 1" /protein_id="EOY25480.1" /db_xref="TAIR:AT1G30470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S9Q4" /translation="MFWRMTGLSTASPVETILDKENFTLEELLDEDEIIQECKALNGR LINFLREKTQVEQLLQYIVVEPPEDAEKKRTFKFPFIACEIFTCEVDIILKTLVEDEE LMNLLFSFLDSNHSHSTLLAGYFSKVVICLLLRKTLPFMQYIKHKYGCNQWCYIRCVS IWIRVNGHQEIVKQLVDLIGITSIMEVLIRLIGADEHMYTNYMESMQWIEDTDVLEMI VDKFSSSDSAEVHANAAETLCAITRFAPHGLAAKVTSPNFIGRLFRHALEDSRPKSVL VNSLSVCISLLDPKRLTLGVYHAYNRQFSQGSLIAANPETVEGMLESLGDLLKLLDVS SSESTLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELMRLGAVQRILNLFFE YPYNNFLHHHVENIILSCLESKNVPLVEHLLRECNLVGKILEAEKNCTLASDPNMPTI SAEGRAPPKIGNIGHLTRISNKLVQLGNSNGEIQAFLQENSEWIDWHTNFLSKRNATE NVYQWACGRPTALQDRTRDSDDDDYQDRDYDVAALANNLSQAFRYGIYSNDDMDEVHG SLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVSNERSIGALA SPSPNNEGAGVVNGDGEDEVVVGEDDLDDTATSSQVPDAKLEDNSADVSEDSREAGPS ANDKPPAWVEWRETPDTSEASGSDESCTIPNGEVQVKLEDKGSGLNPDGTTEDAPSSD NTNETALGRCASTDENPGSKPPEPSESVSGNSSPLVTEEEKRASGTECAPEITKDGAE ETEE" CDS join(206578..206616,207626..207729,210183..210269, 210356..210431,210529..210603,210738..210791, 212521..212580,212857..212973,215528..215622, 215729..215931,216228..216325,216542..216645, 216726..216891,217000..217122,217904..217989, 220033..220174,221210..221239,221586..221656, 221794..222412) /locus_tag="TCM_026900" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30075.m001189; paralog of Thecc1EG042064t2" /codon_start=1 /product="SIT4 phosphatase-associated family protein isoform 3" /protein_id="EOY25482.1" /db_xref="TAIR:AT1G30470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S9Q4" /translation="MFWRMTGLSTASPVETILDKENFTLEELLDEDEIIQECKALNGR LINFLREKTQVEQLLQYIVVEPPEDAEKKRTFKFPFIACEIFTCEVDIILKTLVEDEE LMNLLFSFLDSNHSHSTLLAGYFSKVVICLLLRKTLPFMQYIKGHQEIVKQLVDLIGI TSIMEVLIRLIGADEHMYTNYMESMQWIEDTDVLEMIVDKFSSSDSAEVHANAAETLC AITRFAPHGLAAKVTSPNFIGRLFRHALEDSRPKSVLVNSLSVCISLLDPKRLTLGVY HAYNRQFSQGSLIAANPETVEGMLESLGDLLKLLDVSSSESTLLTTYGKLQPPLGKHR LKIVEFISVLLTVGSEAAEKELMRLGAVQRILNLFFEYPYNNFLHHHVENIILSCLES KNVPLVEHLLRECNLVGKILEAEKNCTLASDPNMPTISAEGRAPPKIGNIGHLTRISN KLVQLGNSNGEIQAFLQQENSEWIDWHTNFLSKRNATENVYQWACGRPTALQDRTRDS DDDDYQDRDYDVAALANNLSQAFRYGIYSNDDMDEVHGSLERDDEDVYFDDESAEVVI SSLRLGDDQESGSLFTNSNWFAFEDDRVSNERSIGALASPSPNNEGAGVVNGDGEDEV VVGEDDLDDTATSSQVPDAKLEDNSADVSEDSREAGPSANDKPPAWVEWRETPDTSEA SGSDESCTIPNGEVQVKLEDKGSGLNPDGTTEDAPSSDNTNETALGRCASTDENPGSK PPEPSESVSGNSSPLVTEEEKRASGTECAPEITKDGAEETEE" CDS join(206578..206616,207626..207729,210183..210269, 210356..210431,210529..210603,210738..210791, 212521..212580,212857..212973,215528..215622, 215729..215931,216228..216325,216542..216645, 216726..216891,217000..217122,217907..217989, 220033..220174,221210..221239,221586..221656, 221794..222412) /locus_tag="TCM_026900" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30075.m001189; paralog of Thecc1EG042064t2" /codon_start=1 /product="SIT4 phosphatase-associated family protein isoform 2" /protein_id="EOY25481.1" /db_xref="TAIR:AT1G30470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S9Q4" /translation="MFWRMTGLSTASPVETILDKENFTLEELLDEDEIIQECKALNGR LINFLREKTQVEQLLQYIVVEPPEDAEKKRTFKFPFIACEIFTCEVDIILKTLVEDEE LMNLLFSFLDSNHSHSTLLAGYFSKVVICLLLRKTLPFMQYIKGHQEIVKQLVDLIGI TSIMEVLIRLIGADEHMYTNYMESMQWIEDTDVLEMIVDKFSSSDSAEVHANAAETLC AITRFAPHGLAAKVTSPNFIGRLFRHALEDSRPKSVLVNSLSVCISLLDPKRLTLGVY HAYNRQFSQGSLIAANPETVEGMLESLGDLLKLLDVSSSESTLLTTYGKLQPPLGKHR LKIVEFISVLLTVGSEAAEKELMRLGAVQRILNLFFEYPYNNFLHHHVENIILSCLES KNVPLVEHLLRECNLVGKILEAEKNCTLASDPNMPTISAEGRAPPKIGNIGHLTRISN KLVQLGNSNGEIQAFLQENSEWIDWHTNFLSKRNATENVYQWACGRPTALQDRTRDSD DDDYQDRDYDVAALANNLSQAFRYGIYSNDDMDEVHGSLERDDEDVYFDDESAEVVIS SLRLGDDQESGSLFTNSNWFAFEDDRVSNERSIGALASPSPNNEGAGVVNGDGEDEVV VGEDDLDDTATSSQVPDAKLEDNSADVSEDSREAGPSANDKPPAWVEWRETPDTSEAS GSDESCTIPNGEVQVKLEDKGSGLNPDGTTEDAPSSDNTNETALGRCASTDENPGSKP PEPSESVSGNSSPLVTEEEKRASGTECAPEITKDGAEETEE" mRNA join(210762..210791,212112..212580,212857..212973, 215528..215622,215729..215931,216228..216325, 216542..216645,216726..216891,217000..217122, 217907..217989,220033..220174,221210..221239, 221586..221656,221794..222958) /locus_tag="TCM_026900" /product="SIT4 phosphatase-associated family protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:30075.m001189.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042064t2" /inference="similar to AA sequence:Phytozome:GSVIVT01021620001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc134t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g155t4" mRNA join(210762..210791,212521..212580,212857..212973, 215528..215622,215729..215931,216228..216325, 216542..216645,216726..216891,217000..217122, 217907..217989,220033..220174,221210..221239, 221586..221656,221794..222100,222176..222958) /locus_tag="TCM_026900" /product="SIT4 phosphatase-associated family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30075.m001189.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042064t2" /inference="similar to AA sequence:Phytozome:GSVIVT01021620001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc134t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g155t4" CDS join(210777..210791,212521..212580,212857..212973, 215528..215622,215729..215931,216228..216325, 216542..216645,216726..216891,217000..217122, 217907..217989,220033..220174,221210..221239, 221586..221656,221794..222100,222176..222412) /locus_tag="TCM_026900" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG042064t2" /codon_start=1 /product="SIT4 phosphatase-associated family protein isoform 4" /protein_id="EOY25483.1" /db_xref="Phytozome:GSVIVT01021620001" /db_xref="TAIR:AT1G30470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S9Q4" /translation="MQYIKGHQEIVKQLVDLIGITSIMEVLIRLIGADEHMYTNYMES MQWIEDTDVLEMIVDKFSSSDSAEVHANAAETLCAITRFAPHGLAAKVTSPNFIGRLF RHALEDSRPKSVLVNSLSVCISLLDPKRLTLGVYHAYNRQFSQGSLIAANPETVEGML ESLGDLLKLLDVSSSESTLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELMR LGAVQRILNLFFEYPYNNFLHHHVENIILSCLESKNVPLVEHLLRECNLVGKILEAEK NCTLASDPNMPTISAEGRAPPKIGNIGHLTRISNKLVQLGNSNGEIQAFLQENSEWID WHTNFLSKRNATENVYQWACGRPTALQDRTRDSDDDDYQDRDYDVAALANNLSQAFRY GIYSNDDMDEVHGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFED DRVSNERSIGALASPSPNNEGAGVVNGDGEDEVVVGEDDLDDTATSSQVPDAKLEDNS ADVSEDSREAGPSANDKPPAWVEWRETPDTSGLNPDGTTEDAPSSDNTNETALGRCAS TDENPGSKPPEPSESVSGNSSPLVTEEEKRASGTECAPEITKDGAEETEE" CDS join(212515..212580,212857..212973,215528..215622, 215729..215931,216228..216325,216542..216645, 216726..216891,217000..217122,217907..217989, 220033..220174,221210..221239,221586..221656, 221794..222412) /locus_tag="TCM_026900" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG042064t2" /codon_start=1 /product="SIT4 phosphatase-associated family protein isoform 5" /protein_id="EOY25484.1" /db_xref="Phytozome:GSVIVT01021620001" /db_xref="TAIR:AT1G30470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S9Q4" /translation="MQGHQEIVKQLVDLIGITSIMEVLIRLIGADEHMYTNYMESMQW IEDTDVLEMIVDKFSSSDSAEVHANAAETLCAITRFAPHGLAAKVTSPNFIGRLFRHA LEDSRPKSVLVNSLSVCISLLDPKRLTLGVYHAYNRQFSQGSLIAANPETVEGMLESL GDLLKLLDVSSSESTLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELMRLGA VQRILNLFFEYPYNNFLHHHVENIILSCLESKNVPLVEHLLRECNLVGKILEAEKNCT LASDPNMPTISAEGRAPPKIGNIGHLTRISNKLVQLGNSNGEIQAFLQENSEWIDWHT NFLSKRNATENVYQWACGRPTALQDRTRDSDDDDYQDRDYDVAALANNLSQAFRYGIY SNDDMDEVHGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRV SNERSIGALASPSPNNEGAGVVNGDGEDEVVVGEDDLDDTATSSQVPDAKLEDNSADV SEDSREAGPSANDKPPAWVEWRETPDTSEASGSDESCTIPNGEVQVKLEDKGSGLNPD GTTEDAPSSDNTNETALGRCASTDENPGSKPPEPSESVSGNSSPLVTEEEKRASGTEC APEITKDGAEETEE" gene 223321..228209 /locus_tag="TCM_026902" /note="dbxref CacaoGD:Thecc1EG026902" mRNA join(223321..224340,227577..228209) /locus_tag="TCM_026902" /product="D111/G-patch domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g35050.1" /inference="similar to AA sequence:frave:gene28945" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15366t1" CDS join(223489..224340,227577..227873) /locus_tag="TCM_026902" /note="dbxref frave:gene28945" /codon_start=1 /product="D111/G-patch domain-containing protein" /protein_id="EOY25485.1" /db_xref="TAIR:AT1G30480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P42698" /translation="MLGGLYGDLPPPSDEDNKPSTNSTVWSSSTKMAPPTLRKPFSGF APPQTILRSQNKPKNSIPKTTPSVSASASPSPTPVAPDEMAQQQPALVGVTSTVMEEY DPARPNDYEDYRRERKRKAMEEEMRRELERRRREEEEREREREEREREREREREGDYN DSRLNISGEEAWRRRAAMSGGVPRSPSPPGNAEGFTIGKSETSGLGVGAGGQMTAAQR MMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASETKPDKKVKSVSFNGPPT RVLLLRNMVGPGEVDDELEDEVGSECAKYGSVTRVLIFEITEPNFPVEEAVRIFIQFE RSEETTKALIDLDGRYFGGRVVKASFYDEERFSKNELAPMPGEIPGFS" gene complement(228227..229360) /locus_tag="TCM_026903" /note="dbxref CacaoGD:Thecc1EG026903" mRNA complement(join(228227..228770,228969..229360)) /locus_tag="TCM_026903" /product="Beta-amylase 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021627001" /inference="similar to AA sequence:frave:gene28944" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g53t1" CDS complement(join(228447..228770,228969..229274)) /locus_tag="TCM_026903" /note="dbxref frave:gene28944" /codon_start=1 /product="Beta-amylase 7" /protein_id="EOY25486.1" /translation="MQQRPQTIAALICWTAFSFVKEMGEGRGRGRGRSEIEKERTKMR ERQRRAITTNIFHGLRRHGGYHLFPRADINQVLRQLANEAGWVVEPDGTTYRSVSFSK TANCCPVCGAMKPITAPTPSSSVVIGGGECSTTASPRHNPVAAVEDPIRVIDSFCDNL IPIAPYIYGGEDGVSTLALQQLYPQEAAPPSQCMPPGSPLVRGNKEENI" gene complement(229615..232220) /locus_tag="TCM_026904" /note="dbxref CacaoGD:Thecc1EG026904" mRNA complement(join(229615..230008,230674..230826, 232018..232220)) /locus_tag="TCM_026904" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30075.m001184.2" /inference="similar to AA sequence:Phytozome:GSVIVT01021626001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc96t3" mRNA complement(join(229665..230008,230093..230145, 230674..230826,232018..232214)) /locus_tag="TCM_026904" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30075.m001184.2" /inference="similar to AA sequence:Phytozome:GSVIVT01021626001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g67t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc96t3" CDS complement(join(229906..230008,230674..230826, 232018..232133)) /locus_tag="TCM_026904" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25487.1" /db_xref="Phytozome:GSVIVT01021626001" /db_xref="TAIR:AT3G29130.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J1T2" /translation="MEESEKESIRAASKEVSRQFKTLIDTNDLDSLKHLQHLILGRLQ DSNAVLSHFNEYSEHCFAEVSSDFSRNTRLLKSMKSDLNYIFQKLRSMKEKIMATYPD AFPDELTREEFDQRPDLQVPQ" CDS complement(join(230001..230008,230093..230145, 230674..230826,232018..232133)) /locus_tag="TCM_026904" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY25488.1" /db_xref="Phytozome:GSVIVT01021626001" /db_xref="TAIR:AT3G29130.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J1T2" /translation="MEESEKESIRAASKEVSRQFKTLIDTNDLDSLKHLQHLILGRLQ DSNAVLSHFNEYSEHCFAEVSSDFSRNTRLLKSMKSDLNYIFQKLSIGFTFRHIAIFV PDLDYGA" gene 232351..237286 /locus_tag="TCM_026905" /note="dbxref CacaoGD:Thecc1EG026905" mRNA join(232351..232750,232845..232904,232993..233160, 233247..233313,233683..233951,234040..234135, 234270..234303,234462..234583,234967..235008, 235103..235180,235262..235626) /locus_tag="TCM_026905" /product="Prefoldin chaperone subunit family protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene16065" /inference="similar to AA sequence:Phytozome:GSVIVT01020569001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06072t00001; inference alignment:Newbler:10:TSA:cgbaL_g10715t00001" mRNA join(232431..232750,232845..232904,232993..233160, 233247..233318,233613..233951,234040..234135, 234270..234303,234462..234583,234967..235008, 235103..235180,235262..235314,236120..237286) /locus_tag="TCM_026905" /product="Prefoldin chaperone subunit family protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene16065" /inference="similar to AA sequence:Phytozome:GSVIVT01020569001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10715t00001" CDS join(232544..232750,232845..232904,232993..233160, 233247..233318,233613..233951,234040..234135, 234270..234303,234462..234583,234967..235008, 235103..235180,235262..235314,236120..236297) /locus_tag="TCM_026905" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Prefoldin chaperone subunit family protein, putative isoform 1" /protein_id="EOY25489.1" /db_xref="Phytozome:GSVIVT01020569001" /db_xref="TAIR:AT1G03760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CTF6" /translation="MGKTEMKRTVTSLSSMFPTEEAQKAAKRVEETLLDKQNEMNQLR GFIADNTSLINLVQKLPDELHHDIMVPFGKAAFLPGRLIHTNEFLVLLGESYYAERTA KQAAEILKRRGKSLESKVDSLKAVMQDLKAEASFFDSTASEAAEGLVEIREEYEDESS TQRESQSGRNKMVIDYFSEDEDYKSGETFSFLDPLEQDSPSFTEADNMVGASEDEEYA RIMSRLEELEKEELAAESCGEDDEDQDNNPAESDGDDEEQTKAVFDRKKNKGYSSLDH DQRYSESRKPLQQSKGKDPMKEEMSNNYHHQDLINQLACTGLTVEPVTKGKMSHSGNM RQDTKMLNPSITASAPSEKKVKFAVEHSSRNEKSVQTSNSGFDGSKAFTGSIVEHTEN MEKNLAGQSTTSSQLSGSQPWKPVSRFKMQRKYIQSSDRHFNSFKTCFFGPTQNPKNK SINDQLSPLSTPSNFPKSTSAKPQTLTLMPAL" CDS join(232544..232750,232845..232904,232993..233160, 233247..233313,233683..233951,234040..234135, 234270..234303,234462..234583,234967..235008, 235103..235180,235262..235318) /locus_tag="TCM_026905" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Prefoldin chaperone subunit family protein, putative isoform 2" /protein_id="EOY25490.1" /db_xref="Phytozome:GSVIVT01020569001" /db_xref="TAIR:AT1G03760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CTF6" /translation="MGKTEMKRTVTSLSSMFPTEEAQKAAKRVEETLLDKQNEMNQLR GFIADNTSLINLVQKLPDELHHDIMVPFGKAAFLPGRLIHTNEFLVLLGESYYAERTA KQAAEILKRRGKSLESKVDSLKAVMQDLKAEASFFDSTASEAAEGLVEIREEYEDESS TQRESQSDPLEQDSPSFTEADNMVGASEDEEYARIMSRLEELEKEELAAESCGEDDED QDNNPAESDGDDEEQTKAVFDRKKNKGYSSLDHDQRYSESRKPLQQSKGKDPMKEEMS NNYHHQDLINQLACTGLTVEPVTKGKMSHSGNMRQDTKMLNPSITASAPSEKKVKFAV EHSSRNEKSVQTSNSGFDGSKAFTGSIVEHTENMEKNLAGQSTTSSQLSGSQPWKPVS RFKMQRK" gene 237615..239003 /locus_tag="TCM_026906" /note="dbxref CacaoGD:Thecc1EG026906" mRNA 237615..239003 /locus_tag="TCM_026906" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.46 coverage" CDS 238210..238500 /locus_tag="TCM_026906" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25491.1" /translation="MIILQGTSQFLQGSFRVDDLSERDLASFTYNSISSSISQQSSND YAIEDRALVCPHLIKIASLAADHRFRHDVYRHLLDKILPGIIAEADFLACYL" gene complement(239263..248726) /locus_tag="TCM_026907" /note="dbxref CacaoGD:Thecc1EG026907" mRNA complement(join(239263..239998,240364..240513, 240792..240903,241297..241622,242174..242335, 242445..242525,242608..242796,242926..243115, 243326..243432,243514..243588,243684..243839, 244070..244153,244243..244356,244438..244533, 244680..244770,244861..244979,245367..245526, 247266..247458,247555..247961,248187..248726)) /locus_tag="TCM_026907" /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s38120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042062t2" /inference="similar to AA sequence:Phytozome:GSVIVT01021625001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g262t3" mRNA complement(join(239392..239998,240364..240513, 240792..240903,241297..241622,242201..242335, 242445..242525,242608..242796,242926..243115, 243326..243432,243514..243588,243684..243839, 244070..244153,244243..244356,244438..244533, 244680..244770,244861..244979,245367..245526, 247266..247795)) /locus_tag="TCM_026907" /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s38120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042062t2" /inference="similar to AA sequence:Phytozome:GSVIVT01021625001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc418t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g262t3" mRNA complement(join(239392..240513,240792..240903, 241297..241622,242174..242335,242445..242525, 242608..242796,242926..243115,243326..243432, 243514..243588,243684..243839,244070..244153, 244243..244356,244438..244533,244680..244770, 244861..244979,245367..245526,247266..247795)) /locus_tag="TCM_026907" /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s38120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042062t3" /inference="similar to AA sequence:Phytozome:GSVIVT01021625001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc418t11; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g262t3" mRNA complement(join(239392..239998,240364..240513, 240792..241622,242174..242335,242445..242525, 242608..242796,242926..243115,243326..243432, 243514..243588,243684..243839,244070..244153, 244243..244356,244438..244533,244680..244770, 244861..244979,245367..245526,247266..247795)) /locus_tag="TCM_026907" /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s38120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042062t3" /inference="similar to AA sequence:Phytozome:GSVIVT01021625001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc418t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g262t3" mRNA complement(join(239392..239998,240364..240513, 240792..240903,241297..241427,241446..241622, 242174..242335,242445..242525,242608..242796, 242926..243115,243326..243432,243514..243588, 243684..243839,244070..244153,244243..244356, 244438..244533,244680..244770,244861..244979, 245367..245526,247266..247321)) /locus_tag="TCM_026907" /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s38120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042062t2" /inference="similar to AA sequence:Phytozome:GSVIVT01021625001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc362t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g262t3" CDS complement(join(239852..239998,240364..240513, 240792..240903,241297..241622,242201..242335, 242445..242525,242608..242796,242926..243115, 243326..243432,243514..243588,243684..243839, 244070..244153,244243..244356,244438..244533, 244680..244770,244861..244979,245367..245526, 247266..247480)) /locus_tag="TCM_026907" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG042062t2" /codon_start=1 /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 5" /protein_id="EOY25496.1" /db_xref="Phytozome:GSVIVT01021625001" /db_xref="TAIR:AT2G34710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04291" /translation="MALSMHKDSSNNKQMDSSKYVRYTPEQVEALERVYSECPKPSSL RRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEEN DRLQKQVSQLVYENGYMRQQLQTGSATTTDNNSCESVVMSGQHQQQQNPTPQHPQRDA NSPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARAC GLVSLEPTKVAEILKDRPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAAR DFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPPTSSFVRAEMLPSGFLIRPCEGGGS IIHIVDHVDLDVWSVPEVLRPLYESSKILAQKMTIAALRHIRQIAQETSGEIQYGGGR QPAVLRTFSQRLCRGFNDAVNGFADDGWSLMGSDGVEDVTIMINSSPGKFLGSQYNTS MFPSFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDTYSAACLKASPYAVP CARPGGFPSSQVILPLAHTVEHEEFLEVVRLEGHAFTPEDVALARDMYLLQLCSGIDE NAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDGAGATRTLDLASALEVGPG SNRLAGDGDPSNYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGSVQRVAMAIA PSRLSSNMEPKALPGSPEALTLARWICRSYRIHTGEELLRVDSQAGDALLKQLWHHSD AIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCSEFSKIM QQGFAYLPAGICVSSMGRPVSYEQAIAWKVLNDNDANHCLTFMFVNWSFV" CDS complement(join(239852..239998,240364..240513, 240792..240903,241297..241622,242174..242335, 242445..242525,242608..242796,242926..243115, 243326..243432,243514..243588,243684..243839, 244070..244153,244243..244356,244438..244533, 244680..244770,244861..244979,245367..245526, 247266..247438)) /locus_tag="TCM_026907" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042062t2" /codon_start=1 /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 1" /protein_id="EOY25492.1" /db_xref="Phytozome:GSVIVT01021625001" /db_xref="TAIR:AT2G34710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04291" /translation="MDSSKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSN IEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVYEN GYMRQQLQTGSATTTDNNSCESVVMSGQHQQQQNPTPQHPQRDANSPAGLLAIAEETL AEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEIL KDRPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWTLRYTTSLEDG SLVICERSLTSSTGGPTGPPTSSFVRAEMLPSGFLIRPCEGGGSIIHIVDHVDLDVWS VPEVLRPLYESSKILAQKMTIAALRHIRQIAQETSGEIQYGGGRQPAVLRTFSQRLCR GFNDAVNGFADDGWSLMGSDGVEDVTIMINSSPGKFLGSQYNTSMFPSFGGGVLCAKA SMLLQNVPPALLVRFLREHRSEWADYGVDTYSAACLKASPYAVPCARPGGFPSSQVIL PLAHTVEHEEFLEVVRLEGHAFTPEDVALARDMYLLQLCSGIDENAVGACAQLVFAPI DESFADDAPLLPSGFRVIPLDPKTVTLTCQSSADGAGATRTLDLASALEVGPGSNRLA GDGDPSNYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLS SNMEPKALPGSPEALTLARWICRSYRIHTGEELLRVDSQAGDALLKQLWHHSDAIMCC SLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCSEFSKIMQQGFA YLPAGICVSSMGRPVSYEQAIAWKVLNDNDANHCLTFMFVNWSFV" CDS complement(join(239852..239998,240364..240513, 240792..240903,241297..241427,241446..241622, 242174..242335,242445..242525,242608..242796, 242926..243115,243326..243432,243514..243588, 243684..243839,244070..244153,244243..244356, 244438..244533,244680..244770,244861..244979, 245367..245462)) /locus_tag="TCM_026907" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042062t2" /codon_start=1 /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 2" /protein_id="EOY25493.1" /db_xref="Phytozome:GSVIVT01021625001" /db_xref="TAIR:AT2G34710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04291" /translation="MNKLLMEENDRLQKQVSQLVYENGYMRQQLQTGSATTTDNNSCE SVVMSGQHQQQQNPTPQHPQRDANSPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMK PGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRPSWFRDCRCLDVLSVIPT GNGGTIELIYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPPT SSFVRAEMLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKMTI AALRHIRQIAQETSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFADDGWSLMGSDG VEDVTIMINSSPGKFLGSQYNTSMFPSFGGGVLCAKASMLLQNVPPALLVRFLREHRS EWADYGVDTYSAACLKASPYAVPCARPGGFPSSQVILPLAHTVEHEEFLEVVRLEGHA FTPEDVALARDMYLLQLCSGIDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLD PKTVTLTCQSSADGAGATRTLDLASALEVGPGSNRLAGDGDPSNYNLRSVLTIAFQFT FENHLRDNVAAMAVVGSVQRVAMAIAPSRLSSNMEPKALPGSPEALTLARWICRSYRI HTGEELLRVDSQAGDALLKQLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVA LQDIMLDKILDEAGRKILCSEFSKIMQQGFAYLPAGICVSSMGRPVSYEQAIAWKVLN DNDANHCLTFMFVNWSFV" CDS complement(join(240304..240513,240792..240903, 241297..241622,242174..242335,242445..242525, 242608..242796,242926..243115,243326..243432, 243514..243588,243684..243839,244070..244153, 244243..244356,244438..244533,244680..244770, 244861..244979,245367..245526,247266..247480)) /locus_tag="TCM_026907" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG042062t3" /codon_start=1 /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 3" /protein_id="EOY25494.1" /db_xref="Phytozome:GSVIVT01021625001" /db_xref="TAIR:AT2G34710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04291" /translation="MALSMHKDSSNNKQMDSSKYVRYTPEQVEALERVYSECPKPSSL RRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEEN DRLQKQVSQLVYENGYMRQQLQTGSATTTDNNSCESVVMSGQHQQQQNPTPQHPQRDA NSPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARAC GLVSLEPTKVAEILKDRPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAAR DFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPPTSSFVRAEMLPSGFLIRPCEGGGS IIHIVDHVDLDVWSVPEVLRPLYESSKILAQKMTIAALRHIRQIAQETSGEIQYGGGR QPAVLRTFSQRLCRGFNDAVNGFADDGWSLMGSDGVEDVTIMINSSPGKFLGSQYNTS MFPSFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDTYSAACLKASPYAVP CARPGGFPSSQVILPLAHTVEHEEFLEVVRLEGHAFTPEDVALARDMYLLQLCSGIDE NAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTVTLTCQSSADGAGATRTLDL ASALEVGPGSNRLAGDGDPSNYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGS VQRVAMAIAPSRLSSNMEPKALPGSPEALTLARWICRSYRIHTGEELLRVDSQAGDAL LKQLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKI LCSEFSKIMQQVKFSVSGLCSSDIEFFPSN" CDS complement(join(241272..241622,242174..242335, 242445..242525,242608..242796,242926..243115, 243326..243432,243514..243588,243684..243839, 244070..244153,244243..244356,244438..244533, 244680..244770,244861..244979,245367..245526, 247266..247480)) /locus_tag="TCM_026907" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG042062t3" /codon_start=1 /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 4" /protein_id="EOY25495.1" /db_xref="Phytozome:GSVIVT01021625001" /db_xref="TAIR:AT2G34710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04291" /translation="MALSMHKDSSNNKQMDSSKYVRYTPEQVEALERVYSECPKPSSL RRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEEN DRLQKQVSQLVYENGYMRQQLQTGSATTTDNNSCESVVMSGQHQQQQNPTPQHPQRDA NSPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARAC GLVSLEPTKVAEILKDRPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAAR DFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPPTSSFVRAEMLPSGFLIRPCEGGGS IIHIVDHVDLDVWSVPEVLRPLYESSKILAQKMTIAALRHIRQIAQETSGEIQYGGGR QPAVLRTFSQRLCRGFNDAVNGFADDGWSLMGSDGVEDVTIMINSSPGKFLGSQYNTS MFPSFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDTYSAACLKASPYAVP CARPGGFPSSQVILPLAHTVEHEEFLEVVRLEGHAFTPEDVALARDMYLLQLCSGIDE NAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTVTLTCQSSADGAGATRTLDL ASALEVGPGSNRLAGDGDPSNYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGS VQRVAMAIAPSRLSSNMEPKALPGSPEALTLARWICRSYRYGFDFML" mRNA complement(join(241597..242335,242445..242525, 242608..242796,242926..243115,243326..243432, 243514..243588,243684..243839,244070..244153, 244243..244356,244438..244533,244680..244770, 244861..244979,245367..245526,247266..247795)) /locus_tag="TCM_026907" /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s38120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042062t3" /inference="similar to AA sequence:Phytozome:GSVIVT01021625001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc418t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g262t3" CDS complement(join(242108..242335,242445..242525, 242608..242796,242926..243115,243326..243432, 243514..243588,243684..243839,244070..244153, 244243..244356,244438..244533,244680..244770, 244861..244979,245367..245526,247266..247480)) /locus_tag="TCM_026907" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG042062t3" /codon_start=1 /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 6" /protein_id="EOY25497.1" /db_xref="Phytozome:GSVIVT01021625001" /db_xref="TAIR:AT1G30490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04291" /translation="MALSMHKDSSNNKQMDSSKYVRYTPEQVEALERVYSECPKPSSL RRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEEN DRLQKQVSQLVYENGYMRQQLQTGSATTTDNNSCESVVMSGQHQQQQNPTPQHPQRDA NSPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARAC GLVSLEPTKVAEILKDRPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAAR DFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPPTSSFVRAEMLPSGFLIRPCEGGGS IIHIVDHVDLDVWSVPEVLRPLYESSKILAQKMTIAALRHIRQIAQETSGEIQYGGGR QPAVLRTFSQRLCRGFNDAVNGFADDGWSLMGSDGVEDVTIMINSSPGKFLGSQYNTS MFPSFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDTYSAACLKASPYAVP CARPGGFPSSQVILPLAHTVEHEEFLEVVRLEGHAFTPEDVALARDMYLLQLCSGIDE NAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTVTLTCQSSAVSFSLACLYFI GIFLKRKKRD" mobile_element complement(246033..246114) /note="source:scaffold_10_CACTA_0137 6924 7006" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(247786..247838) /note="source:scaffold_5_CACTA_0596 1742 1794" /mobile_element_type="transposon:TIR/CACTA" gene complement(252789..259816) /locus_tag="TCM_026909" /note="dbxref CacaoGD:Thecc1EG026909" mRNA complement(join(252789..252934,253031..253380, 253482..253646,253751..253852,257154..257284, 257974..258037,259796..259816)) /locus_tag="TCM_026909" /product="Nuclear transcription factor Y subunit A-7" /inference="alignment:exonerate-protein:2:frave:gene28941" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024732t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021622001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09373t00001" CDS complement(join(253195..253380,253482..253646, 253751..253852,257154..257284,257974..258001)) /locus_tag="TCM_026909" /note="paralog of Thecc1EG024732t1" /codon_start=1 /product="Nuclear transcription factor Y subunit A-7" /protein_id="EOY25498.1" /db_xref="Phytozome:GSVIVT01021622001" /db_xref="TAIR:AT1G30500.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NB87" /translation="MTSSVPDLSDNNEVNEQQKQSESQDQSSSPPTGLSHLAMTTTNV PYATPQHAVAPATYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPL PSDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKPRKPYLHESRHLHALRRARGS GGRFLNAKKNGNKQNDAASGDKSQSDINLNSDKNEVASAEGTS" mobile_element complement(262111..262893) /note="source:CACAO_Again_on_S_E38_scaffold_1 2 789" /mobile_element_type="transposon:TIR/hAT" gene 263648..267462 /locus_tag="TCM_026910" /note="dbxref CacaoGD:Thecc1EG026910" mRNA join(263648..263930,264069..264125,265146..265511, 265829..266048,266585..267457) /locus_tag="TCM_026910" /product="Root FNR 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s38080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000199t1" /inference="similar to AA sequence:ricco:30075.m001180" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15379t1" CDS join(263907..263930,264069..264125,265146..265511, 265829..266048,266585..267081) /locus_tag="TCM_026910" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30075.m001180; paralog of Thecc1EG000199t1" /codon_start=1 /product="Root FNR 1 isoform 1" /protein_id="EOY25499.1" /db_xref="TAIR:AT4G05390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TKJ3" /translation="MAHSAVSQVSVAVPIGSDISLRRSVSKFLTQKHLALLQRNSISF GDKSWVSTLSLDLKSRNIQKSNQYIVCMSVQQASKSKVAVSPLELENAKEPPLNLFKP KEPYTATIVSVERLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGSPH NVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPETGKEDHSKNGVCSNFLCNTKPGDK VQITGPSGKIMLLPEDNPNANHIMIATGTGVAPFRGYLRRMFMEDVTFKFRGLAWLFL GVANADSLLYDDEFTKYLQDFPDHFRYDGALSREQKNKSGGKMYVQDKIEEYSDEIFK LLDDGAHIYFCGLKGMMPGIQETLKRVAEKRGENWDEKLSQLKKKKQWHVEVY" mRNA join(264175..264317,265179..265511,265829..266048, 266585..267462) /locus_tag="TCM_026910" /product="Ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s38080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000199t1" /inference="similar to AA sequence:ricco:30075.m001180" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc260t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15379t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc256t3" CDS join(265278..265511,265829..266048,266585..267081) /locus_tag="TCM_026910" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30075.m001180; paralog of Thecc1EG000199t1" /codon_start=1 /product="Ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform 2" /protein_id="EOY25500.1" /db_xref="TAIR:AT4G05390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04397" /translation="MSVQQASKSKVAVSPLELENAKEPPLNLFKPKEPYTATIVSVER LVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGSPHNVRLYSIASTRYG DSFDGKTASLCVRRAVYYDPETGKEDHSKNGVCSNFLCNTKPGDKVQITGPSGKIMLL PEDNPNANHIMIATGTGVAPFRGYLRRMFMEDVTFKFRGLAWLFLGVANADSLLYDDE FTKYLQDFPDHFRYDGALSREQKNKSGGKMYVQDKIEEYSDEIFKLLDDGAHIYFCGL KGMMPGIQETLKRVAEKRGENWDEKLSQLKKKKQWHVEVY" gene 267931..277851 /locus_tag="TCM_026911" /note="dbxref CacaoGD:Thecc1EG026911" mRNA join(267931..268090,268748..268812,269639..269720, 273258..273333,273998..274161,274453..274585, 275051..275167,275590..275685,277164..277851) /locus_tag="TCM_026911" /product="Calcium-dependent ARF-type GTPase activating protein family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s10090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045263t1" /inference="similar to AA sequence:ricco:30075.m001179" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00034t00010_C1" mRNA join(267980..268090,268748..268812,269639..269720, 273258..273333,273998..274161,274453..274585, 275590..275685,277164..277822) /locus_tag="TCM_026911" /product="ARF-GAP domain 13 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s10090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045263t1" /inference="similar to AA sequence:ricco:30075.m001179" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g113t1; inference alignment:Newbler:10:TSA:cgbaB_g00034t00010_C1" mRNA join(268370..268773,273998..274161,274453..274585, 275051..275167,275590..275685,277164..277600) /locus_tag="TCM_026911" /product="ARF-GAP domain 13 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s10090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045263t1" /inference="similar to AA sequence:ricco:30075.m001179" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc191t5; inference alignment:Newbler:10:TSA:cgbaB_g00034t00010_C1" CDS join(268794..268812,269639..269720,273258..273333, 273998..274161,274453..274585,275051..275167, 275590..275685,277164..277445) /locus_tag="TCM_026911" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30075.m001179; paralog of Thecc1EG045263t1" /codon_start=1 /product="Calcium-dependent ARF-type GTPase activating protein family isoform 1" /protein_id="EOY25501.1" /db_xref="TAIR:AT4G21160.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FVJ3" /translation="MSGTTTAKARLKNLLSQTDNRHCADCAAPDPKWASANIGVFICL KCCSVHRSLGTHISKVLSVTLDEWSDDEIDAMIEVGGNSSANAIYEAYIPENCSKPGP DASHDERRRFIRSKYELQEFVKPSLRITSGKSSASLQSSFSRKILDSFRVKPSENSEG MVEFIGLLKVKVVKGTNLAIRDMMTSDPYVVLTLGQQTVQTTIIKSNLNPVWNEELML SVPQNFGPVKLQVFDHDTFSADDIMGEAEVDIQPLITSAMAYGDPEMFGNMQIGKWLK SHDNALIEDSIINIVDGKVKQDVSLKLQNVESGELYLEVEWLPLDQ" CDS join(268794..268812,269639..269720,273258..273333, 273998..274161,274453..274585,275590..275685, 277164..277445) /locus_tag="TCM_026911" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30075.m001179; paralog of Thecc1EG045263t1" /codon_start=1 /product="ARF-GAP domain 13 isoform 2" /protein_id="EOY25502.1" /db_xref="TAIR:AT4G05330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FVJ3" /translation="MSGTTTAKARLKNLLSQTDNRHCADCAAPDPKWASANIGVFICL KCCSVHRSLGTHISKVLSVTLDEWSDDEIDAMIEVGGNSSANAIYEAYIPENCSKPGP DASHDERRRFIRSKYELQEFVKPSLRITSGKSSASLQSSFSRKILDSFRVKPSENSTV QTTIIKSNLNPVWNEELMLSVPQNFGPVKLQVFDHDTFSADDIMGEAEVDIQPLITSA MAYGDPEMFGNMQIGKWLKSHDNALIEDSIINIVDGKVKQDVSLKLQNVESGELYLEV EWLPLDQ" mobile_element 270543..270629 /note="source:scaffold_10_CACTA_0137 6927 7013" /mobile_element_type="transposon:TIR/CACTA" CDS join(274046..274161,274453..274585,275051..275167, 275590..275685,277164..277445) /locus_tag="TCM_026911" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30075.m001179; paralog of Thecc1EG045263t1" /codon_start=1 /product="ARF-GAP domain 13 isoform 3" /protein_id="EOY25503.1" /db_xref="TAIR:AT4G05330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FVJ3" /translation="MIEVGGNSSANAIYEAYIPENCSKPGPDASHDERRRFIRSKYEL QEFVKPSLRITSGKSSASLQSSFSRKILDSFRVKPSENSEGMVEFIGLLKVKVVKGTN LAIRDMMTSDPYVVLTLGQQTVQTTIIKSNLNPVWNEELMLSVPQNFGPVKLQVFDHD TFSADDIMGEAEVDIQPLITSAMAYGDPEMFGNMQIGKWLKSHDNALIEDSIINIVDG KVKQDVSLKLQNVESGELYLEVEWLPLDQ" mobile_element 279050..282039 /note="source:scaffold_9_CACTA_0932 208 2328" /mobile_element_type="transposon:TIR/CACTA" gene 282378..289873 /locus_tag="TCM_026914" /note="dbxref CacaoGD:Thecc1EG026914" mRNA join(282378..282720,285232..285278,285967..286070, 286571..286660,286931..288547,288698..289010, 289271..289359,289457..289873) /locus_tag="TCM_026914" /product="BED zinc finger,hAT family dimerization domain, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene04367" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025468t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s10500.1" /note="transcript variant 1; alternatively spliced; quality class is strong-expresste, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc477t3" mRNA join(282386..282720,285232..285278,285967..286070, 286571..288547,288698..289010,289271..289359, 289457..289776) /locus_tag="TCM_026914" /product="BED zinc finger,hAT family dimerization domain, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene04367" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025468t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s10500.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc485t4; alternateUTRof:Thecc1EG026914t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc477t3" mRNA join(282386..282720,285967..286070,286571..286660, 286931..288547,288698..289010,289271..289359, 289457..289776) /locus_tag="TCM_026914" /product="BED zinc finger,hAT family dimerization domain, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene04367" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025468t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s10500.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc485t3; alternateUTRof:Thecc1EG026914t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc477t3" mRNA join(282403..282720,285967..286070,286571..288547, 288698..289010,289271..289359,289457..289776) /locus_tag="TCM_026914" /product="BED zinc finger,hAT family dimerization domain, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene04367" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025468t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s10500.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc477t4; alternateUTRof:Thecc1EG026914t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc477t3" mobile_element complement(283679..283756) /note="source:INTACT296_F13_scaffold_9-int 13195 13272" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 285653..285959 /note="source:scaffold_9_CACTA_0932 2325 2623" /mobile_element_type="transposon:TIR/CACTA" CDS join(286931..288547,288698..289010,289271..289359, 289457..289474) /locus_tag="TCM_026914" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025468t1" /codon_start=1 /product="BED zinc finger,hAT family dimerization domain, putative isoform 1" /protein_id="EOY25504.1" /db_xref="Phytozome:POPTR_0011s10500.1" /db_xref="TAIR:AT3G42170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LMZ8" /translation="MESENNGISLESNAHPLEENDEIQQTDEKMQGRQKRKLSSQVST FSEHFPKKSSIDGKAIAKCKHCGIVLNCDSKHEIDNLKRYSENCVGGDTREIGQMISS NQHGSTLTRSSNLDPEKFRELVIGAIFMHNLPLSFVEYRGSRALSSYLHEDVTLISRN TLKAYMIKMHRAERSKIKCLLEETPGRINLTFDLWNSITTDTYICLIAHFVDKNWVLQ KRVLNFSFMPPPYNCVALIEKVYALLAEWGIESKLFSVTLDNVLASNAFVELLKKNLN VRKTFLVGGKFFHLRCFAQVLNLIVQDSLKEVDCVVQKVRESVKYVKGSQVRKQKFLE CVTLMKLNAKGGLRQDVSTKWNSTFLMLKRALYFRKAFSHLEIRDSNYRYCPSEDEWE RVEKLYKLLAVFYDVTCVFSRTKYPTANLFFPSMFIAHSTLQEHMSGQDVYMKNMSTQ MLVKFVKYWSDFSLILAIAVILDPRYKIHFVEWSYGKLYGNDSTQFKNVRDWLFSLYN EYAVKASPTPSSFNNTSDEHTLTEGKRDFFEEFDSYATVKFGAATQKSQLEWYLSEPM VERTKELNILQFWKENQYRYPELAAMARDVLSIPISATASEFAFSVGGKILDQHRSSL KPDILEATVCCKDWLFGEVEHEDMDLNVVIEDNMNSDVGMEEVTSANREVEVQE" CDS join(286931..288547,288698..289010,289271..289359, 289457..289474) /locus_tag="TCM_026914" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025468t1" /codon_start=1 /product="BED zinc finger,hAT family dimerization domain, putative isoform 1" /protein_id="EOY25505.1" /db_xref="Phytozome:POPTR_0011s10500.1" /db_xref="TAIR:AT3G42170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LMZ8" /translation="MESENNGISLESNAHPLEENDEIQQTDEKMQGRQKRKLSSQVST FSEHFPKKSSIDGKAIAKCKHCGIVLNCDSKHEIDNLKRYSENCVGGDTREIGQMISS NQHGSTLTRSSNLDPEKFRELVIGAIFMHNLPLSFVEYRGSRALSSYLHEDVTLISRN TLKAYMIKMHRAERSKIKCLLEETPGRINLTFDLWNSITTDTYICLIAHFVDKNWVLQ KRVLNFSFMPPPYNCVALIEKVYALLAEWGIESKLFSVTLDNVLASNAFVELLKKNLN VRKTFLVGGKFFHLRCFAQVLNLIVQDSLKEVDCVVQKVRESVKYVKGSQVRKQKFLE CVTLMKLNAKGGLRQDVSTKWNSTFLMLKRALYFRKAFSHLEIRDSNYRYCPSEDEWE RVEKLYKLLAVFYDVTCVFSRTKYPTANLFFPSMFIAHSTLQEHMSGQDVYMKNMSTQ MLVKFVKYWSDFSLILAIAVILDPRYKIHFVEWSYGKLYGNDSTQFKNVRDWLFSLYN EYAVKASPTPSSFNNTSDEHTLTEGKRDFFEEFDSYATVKFGAATQKSQLEWYLSEPM VERTKELNILQFWKENQYRYPELAAMARDVLSIPISATASEFAFSVGGKILDQHRSSL KPDILEATVCCKDWLFGEVEHEDMDLNVVIEDNMNSDVGMEEVTSANREVEVQE" CDS join(286931..288547,288698..289010,289271..289359, 289457..289474) /locus_tag="TCM_026914" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG025468t1" /codon_start=1 /product="BED zinc finger,hAT family dimerization domain, putative isoform 1" /protein_id="EOY25506.1" /db_xref="Phytozome:POPTR_0011s10500.1" /db_xref="TAIR:AT3G42170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LMZ8" /translation="MESENNGISLESNAHPLEENDEIQQTDEKMQGRQKRKLSSQVST FSEHFPKKSSIDGKAIAKCKHCGIVLNCDSKHEIDNLKRYSENCVGGDTREIGQMISS NQHGSTLTRSSNLDPEKFRELVIGAIFMHNLPLSFVEYRGSRALSSYLHEDVTLISRN TLKAYMIKMHRAERSKIKCLLEETPGRINLTFDLWNSITTDTYICLIAHFVDKNWVLQ KRVLNFSFMPPPYNCVALIEKVYALLAEWGIESKLFSVTLDNVLASNAFVELLKKNLN VRKTFLVGGKFFHLRCFAQVLNLIVQDSLKEVDCVVQKVRESVKYVKGSQVRKQKFLE CVTLMKLNAKGGLRQDVSTKWNSTFLMLKRALYFRKAFSHLEIRDSNYRYCPSEDEWE RVEKLYKLLAVFYDVTCVFSRTKYPTANLFFPSMFIAHSTLQEHMSGQDVYMKNMSTQ MLVKFVKYWSDFSLILAIAVILDPRYKIHFVEWSYGKLYGNDSTQFKNVRDWLFSLYN EYAVKASPTPSSFNNTSDEHTLTEGKRDFFEEFDSYATVKFGAATQKSQLEWYLSEPM VERTKELNILQFWKENQYRYPELAAMARDVLSIPISATASEFAFSVGGKILDQHRSSL KPDILEATVCCKDWLFGEVEHEDMDLNVVIEDNMNSDVGMEEVTSANREVEVQE" CDS join(286931..288547,288698..289010,289271..289359, 289457..289474) /locus_tag="TCM_026914" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG025468t1" /codon_start=1 /product="BED zinc finger,hAT family dimerization domain, putative isoform 1" /protein_id="EOY25507.1" /db_xref="Phytozome:POPTR_0011s10500.1" /db_xref="TAIR:AT3G42170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LMZ8" /translation="MESENNGISLESNAHPLEENDEIQQTDEKMQGRQKRKLSSQVST FSEHFPKKSSIDGKAIAKCKHCGIVLNCDSKHEIDNLKRYSENCVGGDTREIGQMISS NQHGSTLTRSSNLDPEKFRELVIGAIFMHNLPLSFVEYRGSRALSSYLHEDVTLISRN TLKAYMIKMHRAERSKIKCLLEETPGRINLTFDLWNSITTDTYICLIAHFVDKNWVLQ KRVLNFSFMPPPYNCVALIEKVYALLAEWGIESKLFSVTLDNVLASNAFVELLKKNLN VRKTFLVGGKFFHLRCFAQVLNLIVQDSLKEVDCVVQKVRESVKYVKGSQVRKQKFLE CVTLMKLNAKGGLRQDVSTKWNSTFLMLKRALYFRKAFSHLEIRDSNYRYCPSEDEWE RVEKLYKLLAVFYDVTCVFSRTKYPTANLFFPSMFIAHSTLQEHMSGQDVYMKNMSTQ MLVKFVKYWSDFSLILAIAVILDPRYKIHFVEWSYGKLYGNDSTQFKNVRDWLFSLYN EYAVKASPTPSSFNNTSDEHTLTEGKRDFFEEFDSYATVKFGAATQKSQLEWYLSEPM VERTKELNILQFWKENQYRYPELAAMARDVLSIPISATASEFAFSVGGKILDQHRSSL KPDILEATVCCKDWLFGEVEHEDMDLNVVIEDNMNSDVGMEEVTSANREVEVQE" gene complement(291320..292196) /locus_tag="TCM_026915" /note="dbxref CacaoGD:Thecc1EG026915" mRNA complement(291320..292196) /locus_tag="TCM_026915" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30075.m001178" /inference="similar to AA sequence:Phytozome:POPTR_0001s38070.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(291654..292115) /locus_tag="TCM_026915" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25508.1" /db_xref="Phytozome:POPTR_0001s38070.1" /translation="MASSRTTRIAAAITAYLPLITMMIIGESVARELRPSDHGLEYQS VPPTGLKSPEMMSFFGAESKSSSSSTPSTVALPKAMNSNETSWWAGGSSRRGSDHLRH VLLLGSLVCGVTGVALLAASAFIYLIKRSSPSTNNNNNNNTNNSLVLIGSK" gene complement(293420..295640) /locus_tag="TCM_026916" /note="dbxref CacaoGD:Thecc1EG026916" mRNA complement(join(293420..293710,293864..294176, 295254..295640)) /locus_tag="TCM_026916" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(join(293606..293710,293864..294061)) /locus_tag="TCM_026916" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25509.1" /translation="MGFSKAKRMDLVPPFPENCHLPNLCTCRFYLVELCGDILVVVRF IGKFVDWDEKLVREAADCTHPKGTQFITRIINGGNLEFARRLGIISLKRCKRQANF" gene 296977..299409 /locus_tag="TCM_026917" /note="dbxref CacaoGD:Thecc1EG026917" mRNA join(296977..297442,297550..297684,298006..298237, 298693..298896,299024..299409) /locus_tag="TCM_026917" /product="Isoeugenol synthase 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s02420.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006371t1" /inference="similar to AA sequence:ricco:30041.m000238" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1238t1" CDS join(297245..297442,297550..297684,298006..298237, 298693..298896,299024..299223) /locus_tag="TCM_026917" /note="dbxref ricco:30041.m000238; paralog of Thecc1EG006371t1" /codon_start=1 /product="Isoeugenol synthase 1" /protein_id="EOY25510.1" /db_xref="TAIR:AT1G75280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q15GI3" /translation="MEMCGEKSKILIFGGTGYLGQYMVKASVSLGHPTYAYTRPLTPN SSSTSKLQLLKEFESMGVTMFYGELDNHERLVSVLRQVEVVISTLAVPQHLDQLKIIS AIKEAGTIKRFVPSEYGNEVDRSSALPPFEALLANKRKIRRAAEAAGLSYTYVAGNSF LAYFVEYLLHPHDENKKDVVVYGSGEAKVAFNYEEDVAAYTVKAATDPRVANRVIIYR PPNNIVTQLQLISAWERKSGRTFKRVHVPEEEVIKRSETLPYPDNIPVAVLHNIFIKG DQMSYELTEQDLEASKLYPDYEYTTVDKYLDMCVVNPPQPKLAAFA" mobile_element 299731..300393 /note="source:INTACT639F_F363_scaffold_5-int 7451 8429" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(300394..300898) /note="source:CACAO_PIF_E278_scaffold_9 3762 4276" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 300899..300967 /note="source:INTACT639F_F363_scaffold_5-int 8430 8533" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 300967..304624 /note="source:CACAO_hAT_E2557_scaffold_6 1 3658" /mobile_element_type="transposon:TIR/hAT" gene 300981..303421 /locus_tag="TCM_026918" /note="dbxref CacaoGD:Thecc1EG026918" mRNA join(300981..301207,301683..302127,303177..303421) /locus_tag="TCM_026918" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene09769.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001453t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g41t1" CDS join(301780..302127,303177..303353) /locus_tag="TCM_026918" /note="paralog of Thecc1EG001453t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25511.1" /translation="MDATDKCDDSVNYNCYKTRSQSSAFVGSSSQQIPIIELSRTPAS GSQALISPTGSKPPLCSSSAKRHRKLTSEVWNHFEKKNIDREDVASCNYCKTILKANS KNGTTALKSHMNTCLEIFYDLTNIFSGIEYLTANYFFVKVRKLRIAIVKWMCSDDVTI SATAKKMFDKFEKY" mobile_element 304626..304684 /note="source:INTACT639F_F363_scaffold_5-int 8526 8583" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(304744..313156) /locus_tag="TCM_026920" /note="dbxref CacaoGD:Thecc1EG026920" mRNA complement(join(304744..305185,305277..305491, 305592..305977,306641..306768,307109..307302, 307532..307629,308656..308754,308843..309011, 309331..309403,312747..313156)) /locus_tag="TCM_026920" /product="Acyl-activating enzyme 14, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021658001" /inference="similar to AA sequence:Phytozome:GSVIVT01021658001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g59t3" CDS complement(join(305056..305185,305277..305491, 305592..305977,306641..306768,307109..307302, 307532..307629,308656..308754,308843..309011, 309331..309403,312747..312946)) /locus_tag="TCM_026920" /codon_start=1 /product="Acyl-activating enzyme 14, putative" /protein_id="EOY25512.1" /db_xref="Phytozome:GSVIVT01021658001" /db_xref="TAIR:AT1G30520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N5P7" /translation="MGFYSEAHICQCFSRLTTEKRNSVVTIRGDRQKTGHQLVECVLS LARALLHLGLRNGDVVAISAFNSDTYLEWLLAVAFIGGIVAPLNYRWSFEEARMAMVT VTPKMLATDESCYDWHSALQSHAIPSLRWHISLSSPSSDFINKYKILTMEMLLEQSVR SGSMNYSCAPEGAVVICFTSGTTGKPKGVVISHTALIVQSLAKVAIVGYSEDDVYLHT APLCHIGGLSSAMAMLMIGACHVFIPKFEARLALEALEQHHVTSLITVPAIMADLISL IRPKRSWKGRDSVKKILNGGGGLSYDLVKDVIKFFPRAKLLSAYGMTETCSSLAFTTL FEPMLEASGTSLQLFSKSNPSPVKPGGVCVGKPAPHVDLKICFDDCSDVGRILTRGPH VMLRYWDQIPENASGSIEEAWLDTGDIGFIDDHGNLWLVGRTNGRIKSGGENVYPEEV EAVLDQHPGVISSIVVGIPDPRLTEMVVACIRLRDNWQWSNNSSKFSVQSNELFLSSE ILRHYCRERNLSRFKIPKIFILWKTPFPLTTTGKIRRDQVRRDVMSQLQSSPSKL" mobile_element 309759..309814 /note="source:CACAO_M_E22931_F20_scaffold_3 357 413" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 310051..311860 /note="source:CACAO_hAT_E410_scaffold_1 622 2483" /mobile_element_type="transposon:TIR/hAT" mobile_element 311790..311933 /note="source:scaffold_5_CACTA_0607 4711 4847" /mobile_element_type="transposon:TIR/CACTA" gene 317391..324311 /locus_tag="TCM_026921" /note="dbxref CacaoGD:Thecc1EG026921" mRNA join(317391..317731,318261..320651,321685..321811, 322312..322413,323543..324311) /locus_tag="TCM_026921" /product="Early endosome antigen, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene28879" /inference="similar to AA sequence:ricco:30075.m001176" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1165t3" mRNA join(317578..317731,318261..320651,321685..321811, 322333..322871) /locus_tag="TCM_026921" /product="Early endosome antigen, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene28879" /inference="similar to AA sequence:ricco:30075.m001176" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1122t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1165t3" CDS join(318295..320651,321685..321811,322312..322413, 323543..323605) /locus_tag="TCM_026921" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30075.m001176" /codon_start=1 /product="Early endosome antigen, putative isoform 1" /protein_id="EOY25513.1" /db_xref="TAIR:AT2G34730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SB27" /translation="MGMESCRDVNASVVSCCDASINGSVHIGDTIKEGEELDVDFLNE FDSYVEDINDRLTVSRLVSDSVIRGMVNAVEQEAADRIAQKELELVRLKKMMNHYHVC SDENKSLLKHYEPNIEKDGVFSRLSDSFCEHDRIRESLGSLQNAAKGQFKNLRIEIDK IRGHSSIRRINSSPEWVGLGGILQEDETTDWIDVDKTLDSLRITLDTIYEQVDDIICS SSVSLCQWQLELEYQEDVEHMVVTSCIRSLKEQFEERLWDQNAQCYGNGNVNWIEKIN EISSLRQELDTISKSLSNPETGMLNSHSSLEINDDLSNNKRTDHLHRKVSENHVSSLW EGNGKQEESVIAVPENLDAAQLSHMSKGELVNFFKIEMTKMKRNHDYKLQQLTEEYFT LKREYLKERGSSLPFRKDKEFDVLRKKIPDVIVKLDRILVGNEKFPLVSNNGETLGSL KDRLESLLSENHQLRDSLFDKKKEVNSLSSQVSDAIVKISQYSLTEDNLLKKVENLES AVEDVHIESAISGDVYKCFIREAISQTKRISEDLEVEHIIMKEIYDLIWRDASCNMPH ASKSEFEDSDLESLIMEGLCAIVFRAAFSEAKEKLHDLSKDACKKERVLKLEVEEKEE LQQHMLLMASTIDEKEKLLNETSAAMEREKEKFMLASQELDVVRDKTNRQQMIISKCN EESNVLKVNLRQASEKLELQQVETCKLNEKLDQAVKDLRESDDEKRRLLVAAKEKENI LSLFEANENEHRKQMESIIILVEGLYKTFADFECQVAEDMKRSNLRLENLNSQFSSLI QMANVLKRKGLHYKQNLERRCSDLEKAETEVDLLGDQVDVLLGLLEKIYIALDHYSPI LKHYTGVMEILNLVRRELSGESTRPV" CDS join(318295..320651,321685..321811,322333..322524) /locus_tag="TCM_026921" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30075.m001176" /codon_start=1 /product="Early endosome antigen, putative isoform 2" /protein_id="EOY25514.1" /db_xref="TAIR:AT2G34730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SB27" /translation="MGMESCRDVNASVVSCCDASINGSVHIGDTIKEGEELDVDFLNE FDSYVEDINDRLTVSRLVSDSVIRGMVNAVEQEAADRIAQKELELVRLKKMMNHYHVC SDENKSLLKHYEPNIEKDGVFSRLSDSFCEHDRIRESLGSLQNAAKGQFKNLRIEIDK IRGHSSIRRINSSPEWVGLGGILQEDETTDWIDVDKTLDSLRITLDTIYEQVDDIICS SSVSLCQWQLELEYQEDVEHMVVTSCIRSLKEQFEERLWDQNAQCYGNGNVNWIEKIN EISSLRQELDTISKSLSNPETGMLNSHSSLEINDDLSNNKRTDHLHRKVSENHVSSLW EGNGKQEESVIAVPENLDAAQLSHMSKGELVNFFKIEMTKMKRNHDYKLQQLTEEYFT LKREYLKERGSSLPFRKDKEFDVLRKKIPDVIVKLDRILVGNEKFPLVSNNGETLGSL KDRLESLLSENHQLRDSLFDKKKEVNSLSSQVSDAIVKISQYSLTEDNLLKKVENLES AVEDVHIESAISGDVYKCFIREAISQTKRISEDLEVEHIIMKEIYDLIWRDASCNMPH ASKSEFEDSDLESLIMEGLCAIVFRAAFSEAKEKLHDLSKDACKKERVLKLEVEEKEE LQQHMLLMASTIDEKEKLLNETSAAMEREKEKFMLASQELDVVRDKTNRQQMIISKCN EESNVLKVNLRQASEKLELQQVETCKLNEKLDQAVKDLRESDDEKRRLLVAAKEKENI LSLFEANENEHRKQMESIIILVEGLYKTFADFECQVAEDMKRSNLRLENLNSQFSSLI QMANVLKRKGLHYKQNLERRCSDLEKAETEVDVLLGLLEKIYIALDHYSPILKHYTGV SCFFVLLNFYIVIFLKSESKQIHASMERFLGHKDQ" gene 324987..325647 /locus_tag="TCM_026922" /note="dbxref CacaoGD:Thecc1EG026922" mRNA 324987..325647 /locus_tag="TCM_026922" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30226.m002054" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc4439t1" CDS 325096..325575 /locus_tag="TCM_026922" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25515.1" /translation="MGSHCNPSKRHYDITLSKRTRKPLDLQEANGTSNIASSKWDNPL KIFPRKAADDDDDDEDEGEESSDHKSLKQLINGDGGEAKEETSCRSSGRSSLVQHFNQ EEKQLQLVKKNQQDGVHGGAKLKGMMSRYAKVLSRLVKAKREPRLGSNKKHLLRLTM" mobile_element complement(325599..325683) /note="source:CACAO_M_E44848_F172_scaffold_6 1911 1997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 325633..325710 /note="source:CACAO_M_E49559_F88_scaffold_7 7672 7749" /mobile_element_type="retrotransposon:LTR/Copia" gene 326901..348665 /locus_tag="TCM_026923" /note="dbxref CacaoGD:Thecc1EG026923" mRNA join(326901..328203,328341..328403,330859..330938, 331073..331190,334394..334471,336910..337063, 337253..337341,338904..339160,339720..339891, 340020..340103,340189..340592,340907..341060, 341326..341407,343027..343106,343890..344051, 345828..345895,346800..346880,346995..347237, 347760..348238,348479..348665) /locus_tag="TCM_026923" /product="VPS54 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene16757" /inference="similar to AA sequence:ricco:30160.m000431" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g105t4" mRNA join(326901..328203,328341..328403,330859..330938, 331073..331190,334397..334471,336910..337063, 337253..337341,338904..339160,339720..339891, 340020..340103,340189..340592,340907..341060, 341326..341407,343027..343106,343890..344051, 345828..345895,346800..346880,346995..347237, 347760..348238,348479..348665) /locus_tag="TCM_026923" /product="VPS54 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene16757" /inference="similar to AA sequence:ricco:30160.m000431" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:PASA:2:TSA:puevd3b026042t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g105t4" mRNA join(327045..328203,328341..328403,330859..330938, 331073..331190,334397..334471,336910..337063, 337253..337341,338904..339160,339720..339891, 340020..340103,340189..340592,340907..341060, 341326..341407,343027..343106,343890..344051, 345828..345895,346800..346880,346995..347237, 347764..348163) /locus_tag="TCM_026923" /product="VPS54 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene16757" /inference="similar to AA sequence:ricco:30160.m000431" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc880t6; alternateUTRof:Thecc1EG026923t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g105t4" mRNA join(327369..328203,328341..328403,330859..330938, 331073..331190,334394..334471,336910..337063, 337253..337341,338904..339160,339720..339891, 340020..340103,340189..340592,340907..341060, 341326..341407,343026..343106,343890..344051, 345826..345895,346800..346880,346995..347237, 347764..348190) /locus_tag="TCM_026923" /product="VPS54 isoform 4" /inference="alignment:exonerate-protein:2:frave:gene16757" /inference="similar to AA sequence:ricco:30160.m000431" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g105t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g105t4" mRNA join(327369..328203,328341..328403,330859..330938, 331073..331190,334397..334471,336910..337063, 337253..337341,338904..339160,339720..339891, 340020..340103,340189..340592,340907..341060, 341326..341407,343027..343106,343890..344051, 345828..345896,346800..346880,346995..347241, 347760..348190) /locus_tag="TCM_026923" /product="VPS54 isoform 6" /inference="alignment:exonerate-protein:2:frave:gene16757" /inference="similar to AA sequence:ricco:30160.m000431" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g105t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g105t4" mRNA join(327369..328203,328341..328403,330859..330938, 331073..331190,334397..334471,336910..337063, 337253..337341,338904..339160,339720..339891, 340020..340103,340189..340584,340907..341060, 341326..341407,343027..343107,343890..344052, 345828..345895,346800..346880,346995..347237, 347760..348190) /locus_tag="TCM_026923" /product="VPS54 isoform 5" /inference="alignment:exonerate-protein:2:frave:gene16757" /inference="similar to AA sequence:frave:gene16757" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g105t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g105t4" CDS join(327457..328203,328341..328403,330859..330938, 331073..331190,334394..334471,336910..337063, 337253..337341,338904..339160,339720..339891, 340020..340103,340189..340592,340907..341060, 341326..341407,343027..343106,343890..344051, 345828..345895,346800..346880,346995..347130) /locus_tag="TCM_026923" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30160.m000431" /codon_start=1 /product="VPS54 isoform 1" /protein_id="EOY25516.1" /db_xref="TAIR:AT4G19490.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JT76" /translation="MDPQPSPSGRSSPVGRSPSFSVTDAGSQSLSSILNNPHAARLEA SWVGWWSVSPPEFAPLISTKASSDLTRSDFQSYVSSVSDSYHRFEDIRNHSTKEQTLD VDNIGEALVACLREVPALYFKEDFALEDGPTFRAACPFTDVSENIVLQEKLSHYLDVV ELHLVKEISLRSNSFFEAQGQLQDLNVKIVEGCSRIRELKETIRLLDTDLVDSARQIQ ELNANRTNLFALQHKLKLILSVNQALSALKLLVASAECAGALDVIDDLQHLLDGDELT GLHCFRHLRDHVVASIDSINSILSAEFMRASIHDTGDADAVILLKAKARASISLNGKD VEQVKLDEEETSNFRDRLLPLIIGLLRTAKLPFVLRTYRDTLTADMKTAIKTAVAELL PVLVARPLESDLTAERSMDIDGGGSSLASKLRSLSSESFVQLLAAIFKIVQAHLVRAA EVKRAIEWIMCNLDGHYAADSVASAIALGAMVAESAQESNGQGGPLLPYAPLRSTAKA LSSPGKASDAISPSNLSKNFRADVLRENTEAVFAACDAAHGRWAKLLGVRALLHPRLR LQEFLSIYNITQEFITATEKIGGRLGYSIRGTLQSQAKSFVDFQHESRMTKIKAVLDQ ETWVEVDVPDEFQAIVSSLHSEAIISGNKDNAETNMTSYSDMVACNEGSQVADTGLQG ALEQHEQTDSSGTTALNAAQGKAEAIEKMKSDSVTSSQSNSSNMKERGKPTTQMLEYG GVGYHMVNCGLILVKMLSEYIDMNHLLPSLSLEVVHRVVEILKFFNTRTCQLVLGAGA MQVSGLKSITSKHLALASQVISFTYAIIPEIRQILFLKVPEPRKSLLLLEFDRVAQDY KVHRDEIHTKLVQIMRERLLVHLRGLPQIVESWNRPEDAEPQPSQFARSLIKEVGYLQ RVLSRTLHEADVQAIFRQVVVIFHSQISEAFSRLEITTPQAKDRLHRDIKHILGCIRS LPTDNLNNSATPNWGQLDEFLVQRFGAEAG" CDS join(327457..328203,328341..328403,330859..330938, 331073..331190,334397..334471,336910..337063, 337253..337341,338904..339160,339720..339891, 340020..340103,340189..340592,340907..341060, 341326..341407,343027..343106,343890..344051, 345828..345895,346800..346880,346995..347130) /locus_tag="TCM_026923" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30160.m000431" /codon_start=1 /product="VPS54 isoform 2" /protein_id="EOY25517.1" /db_xref="TAIR:AT4G19490.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JT76" /translation="MDPQPSPSGRSSPVGRSPSFSVTDAGSQSLSSILNNPHAARLEA SWVGWWSVSPPEFAPLISTKASSDLTRSDFQSYVSSVSDSYHRFEDIRNHSTKEQTLD VDNIGEALVACLREVPALYFKEDFALEDGPTFRAACPFTDVSENIVLQEKLSHYLDVV ELHLVKEISLRSNSFFEAQGQLQDLNVKIVEGCSRIRELKETIRLLDTDLVDSARQIQ ELNANRTNLFALQHKLKLILSVNQALSALKLLVASAECAGALDVIDDLQHLLDGDELT GLHCFRHLRDHVVASIDSINSILSAEFMRASIHDTGDADAVILLKAKARASISLNGKD VEVKLDEEETSNFRDRLLPLIIGLLRTAKLPFVLRTYRDTLTADMKTAIKTAVAELLP VLVARPLESDLTAERSMDIDGGGSSLASKLRSLSSESFVQLLAAIFKIVQAHLVRAAE VKRAIEWIMCNLDGHYAADSVASAIALGAMVAESAQESNGQGGPLLPYAPLRSTAKAL SSPGKASDAISPSNLSKNFRADVLRENTEAVFAACDAAHGRWAKLLGVRALLHPRLRL QEFLSIYNITQEFITATEKIGGRLGYSIRGTLQSQAKSFVDFQHESRMTKIKAVLDQE TWVEVDVPDEFQAIVSSLHSEAIISGNKDNAETNMTSYSDMVACNEGSQVADTGLQGA LEQHEQTDSSGTTALNAAQGKAEAIEKMKSDSVTSSQSNSSNMKERGKPTTQMLEYGG VGYHMVNCGLILVKMLSEYIDMNHLLPSLSLEVVHRVVEILKFFNTRTCQLVLGAGAM QVSGLKSITSKHLALASQVISFTYAIIPEIRQILFLKVPEPRKSLLLLEFDRVAQDYK VHRDEIHTKLVQIMRERLLVHLRGLPQIVESWNRPEDAEPQPSQFARSLIKEVGYLQR VLSRTLHEADVQAIFRQVVVIFHSQISEAFSRLEITTPQAKDRLHRDIKHILGCIRSL PTDNLNNSATPNWGQLDEFLVQRFGAEAG" CDS join(327457..328203,328341..328403,330859..330938, 331073..331190,334397..334471,336910..337063, 337253..337341,338904..339160,339720..339891, 340020..340103,340189..340592,340907..341060, 341326..341407,343027..343106,343890..344051, 345828..345895,346800..346880,346995..347130) /locus_tag="TCM_026923" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30160.m000431" /codon_start=1 /product="VPS54 isoform 2" /protein_id="EOY25518.1" /db_xref="TAIR:AT4G19490.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JT76" /translation="MDPQPSPSGRSSPVGRSPSFSVTDAGSQSLSSILNNPHAARLEA SWVGWWSVSPPEFAPLISTKASSDLTRSDFQSYVSSVSDSYHRFEDIRNHSTKEQTLD VDNIGEALVACLREVPALYFKEDFALEDGPTFRAACPFTDVSENIVLQEKLSHYLDVV ELHLVKEISLRSNSFFEAQGQLQDLNVKIVEGCSRIRELKETIRLLDTDLVDSARQIQ ELNANRTNLFALQHKLKLILSVNQALSALKLLVASAECAGALDVIDDLQHLLDGDELT GLHCFRHLRDHVVASIDSINSILSAEFMRASIHDTGDADAVILLKAKARASISLNGKD VEVKLDEEETSNFRDRLLPLIIGLLRTAKLPFVLRTYRDTLTADMKTAIKTAVAELLP VLVARPLESDLTAERSMDIDGGGSSLASKLRSLSSESFVQLLAAIFKIVQAHLVRAAE VKRAIEWIMCNLDGHYAADSVASAIALGAMVAESAQESNGQGGPLLPYAPLRSTAKAL SSPGKASDAISPSNLSKNFRADVLRENTEAVFAACDAAHGRWAKLLGVRALLHPRLRL QEFLSIYNITQEFITATEKIGGRLGYSIRGTLQSQAKSFVDFQHESRMTKIKAVLDQE TWVEVDVPDEFQAIVSSLHSEAIISGNKDNAETNMTSYSDMVACNEGSQVADTGLQGA LEQHEQTDSSGTTALNAAQGKAEAIEKMKSDSVTSSQSNSSNMKERGKPTTQMLEYGG VGYHMVNCGLILVKMLSEYIDMNHLLPSLSLEVVHRVVEILKFFNTRTCQLVLGAGAM QVSGLKSITSKHLALASQVISFTYAIIPEIRQILFLKVPEPRKSLLLLEFDRVAQDYK VHRDEIHTKLVQIMRERLLVHLRGLPQIVESWNRPEDAEPQPSQFARSLIKEVGYLQR VLSRTLHEADVQAIFRQVVVIFHSQISEAFSRLEITTPQAKDRLHRDIKHILGCIRSL PTDNLNNSATPNWGQLDEFLVQRFGAEAG" CDS join(327457..328203,328341..328403,330859..330938, 331073..331190,334397..334471,336910..337063, 337253..337341,338904..339160,339720..339891, 340020..340103,340189..340592,340907..341060, 341326..341407,343027..343106,343890..344051, 345828..345896,346800..346880) /locus_tag="TCM_026923" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:30160.m000431" /codon_start=1 /product="VPS54 isoform 6" /protein_id="EOY25521.1" /db_xref="TAIR:AT4G19490.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JT76" /translation="MDPQPSPSGRSSPVGRSPSFSVTDAGSQSLSSILNNPHAARLEA SWVGWWSVSPPEFAPLISTKASSDLTRSDFQSYVSSVSDSYHRFEDIRNHSTKEQTLD VDNIGEALVACLREVPALYFKEDFALEDGPTFRAACPFTDVSENIVLQEKLSHYLDVV ELHLVKEISLRSNSFFEAQGQLQDLNVKIVEGCSRIRELKETIRLLDTDLVDSARQIQ ELNANRTNLFALQHKLKLILSVNQALSALKLLVASAECAGALDVIDDLQHLLDGDELT GLHCFRHLRDHVVASIDSINSILSAEFMRASIHDTGDADAVILLKAKARASISLNGKD VEVKLDEEETSNFRDRLLPLIIGLLRTAKLPFVLRTYRDTLTADMKTAIKTAVAELLP VLVARPLESDLTAERSMDIDGGGSSLASKLRSLSSESFVQLLAAIFKIVQAHLVRAAE VKRAIEWIMCNLDGHYAADSVASAIALGAMVAESAQESNGQGGPLLPYAPLRSTAKAL SSPGKASDAISPSNLSKNFRADVLRENTEAVFAACDAAHGRWAKLLGVRALLHPRLRL QEFLSIYNITQEFITATEKIGGRLGYSIRGTLQSQAKSFVDFQHESRMTKIKAVLDQE TWVEVDVPDEFQAIVSSLHSEAIISGNKDNAETNMTSYSDMVACNEGSQVADTGLQGA LEQHEQTDSSGTTALNAAQGKAEAIEKMKSDSVTSSQSNSSNMKERGKPTTQMLEYGG VGYHMVNCGLILVKMLSEYIDMNHLLPSLSLEVVHRVVEILKFFNTRTCQLVLGAGAM QVSGLKSITSKHLALASQVISFTYAIIPEIRQILFLKVPEPRKSLLLLEFDRVAQDYK VHRDEIHTKLVQIMRERLLVHLRGLPQIVESWNRPEDAEPQPSQFARSLIKEVGYLQR VLSRTLHEADVQAIFRASCCNLPFANFRSIFTLRDHHSSGKR" CDS join(327457..328203,328341..328403,330859..330938, 331073..331190,334394..334471,336910..337063, 337253..337341,338904..339160,339720..339891, 340020..340103,340189..340592,340907..341060, 341326..341407,343026..343093) /locus_tag="TCM_026923" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30160.m000431" /codon_start=1 /product="VPS54 isoform 4" /protein_id="EOY25519.1" /db_xref="TAIR:AT4G19490.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JT76" /translation="MDPQPSPSGRSSPVGRSPSFSVTDAGSQSLSSILNNPHAARLEA SWVGWWSVSPPEFAPLISTKASSDLTRSDFQSYVSSVSDSYHRFEDIRNHSTKEQTLD VDNIGEALVACLREVPALYFKEDFALEDGPTFRAACPFTDVSENIVLQEKLSHYLDVV ELHLVKEISLRSNSFFEAQGQLQDLNVKIVEGCSRIRELKETIRLLDTDLVDSARQIQ ELNANRTNLFALQHKLKLILSVNQALSALKLLVASAECAGALDVIDDLQHLLDGDELT GLHCFRHLRDHVVASIDSINSILSAEFMRASIHDTGDADAVILLKAKARASISLNGKD VEQVKLDEEETSNFRDRLLPLIIGLLRTAKLPFVLRTYRDTLTADMKTAIKTAVAELL PVLVARPLESDLTAERSMDIDGGGSSLASKLRSLSSESFVQLLAAIFKIVQAHLVRAA EVKRAIEWIMCNLDGHYAADSVASAIALGAMVAESAQESNGQGGPLLPYAPLRSTAKA LSSPGKASDAISPSNLSKNFRADVLRENTEAVFAACDAAHGRWAKLLGVRALLHPRLR LQEFLSIYNITQEFITATEKIGGRLGYSIRGTLQSQAKSFVDFQHESRMTKIKAVLDQ ETWVEVDVPDEFQAIVSSLHSEAIISGNKDNAETNMTSYSDMVACNEGSQVADTGLQG ALEQHEQTDSSGTTALNAAQGKAEAIEKMKSDSVTSSQSNSSNMKERGKPTTQMLEYG GVGYHMVNCGLILVKMLSEYIDMNHLLPSLSLEVVHRVVEILKFFNTRTCQLVLGAGA MQVSGLKSITSKHLALASQVISFTYAIIPGNQANPVSESSRASKVTIVVGV" CDS join(327457..328203,328341..328403,330859..330938, 331073..331190,334397..334471,336910..337063, 337253..337341,338904..339160,339720..339891, 340020..340103,340189..340584,340907..340945) /locus_tag="TCM_026923" /note="encoded by transcript variant 5; alternatively spliced; dbxref frave:gene16757" /codon_start=1 /product="VPS54 isoform 5" /protein_id="EOY25520.1" /db_xref="TAIR:AT4G19490.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JT76" /translation="MDPQPSPSGRSSPVGRSPSFSVTDAGSQSLSSILNNPHAARLEA SWVGWWSVSPPEFAPLISTKASSDLTRSDFQSYVSSVSDSYHRFEDIRNHSTKEQTLD VDNIGEALVACLREVPALYFKEDFALEDGPTFRAACPFTDVSENIVLQEKLSHYLDVV ELHLVKEISLRSNSFFEAQGQLQDLNVKIVEGCSRIRELKETIRLLDTDLVDSARQIQ ELNANRTNLFALQHKLKLILSVNQALSALKLLVASAECAGALDVIDDLQHLLDGDELT GLHCFRHLRDHVVASIDSINSILSAEFMRASIHDTGDADAVILLKAKARASISLNGKD VEVKLDEEETSNFRDRLLPLIIGLLRTAKLPFVLRTYRDTLTADMKTAIKTAVAELLP VLVARPLESDLTAERSMDIDGGGSSLASKLRSLSSESFVQLLAAIFKIVQAHLVRAAE VKRAIEWIMCNLDGHYAADSVASAIALGAMVAESAQESNGQGGPLLPYAPLRSTAKAL SSPGKASDAISPSNLSKNFRADVLRENTEAVFAACDAAHGRWAKLLGVRALLHPRLRL QEFLSIYNITQEFITATEKIGGRLGYSIRGTLQSQAKSFVDFQHESRMTKIKAVLDQE TWVEVDVPDEFQAIVSSLHSEAIISGNKDNAETNMTSYSDMVACNEGSQVADTGLQGA LEQHEQTDSSGTTALNAAQGKAEAIEKMKSDSVTSSQSNSSNMKERGKPTTQMLEYGG VGYHMWFNIGEDAVGVH" gene <337875..338928 /locus_tag="TCM_026924" /note="dbxref CacaoGD:Thecc1EG026924" mRNA join(<337875..338002,338895..338913) /locus_tag="TCM_026924" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is none, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc872t10_C1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc198t11_C1" CDS <337877..337975 /locus_tag="TCM_026924" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY25522.1" /translation="GWTYPMRGLSSCCNMGLDSCLVQLRHLFCTGL" gene complement(347213..352616) /locus_tag="TCM_026926" /note="dbxref CacaoGD:Thecc1EG026926" mRNA complement(join(347213..347237,348479..350087, 350181..350827,350965..351195,351306..352483)) /locus_tag="TCM_026926" /product="Glycosyl hydrolases family 31 protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g03250.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027696t5" /inference="similar to AA sequence:Phytozome:POPTR_0011s15750.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc237t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g85t2" mRNA complement(join(348196..350087,350181..350827, 350965..351195,351306..352045,352162..352616)) /locus_tag="TCM_026926" /product="Glycosyl hydrolases family 31 protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g03250.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027696t5" /inference="similar to AA sequence:Phytozome:POPTR_0011s15750.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g85t2" mRNA complement(join(348477..350087,350181..350827, 350965..351195,351306..352045,352162..352483)) /locus_tag="TCM_026926" /product="Glycosyl hydrolases family 31 protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g03250.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027696t5" /inference="similar to AA sequence:Phytozome:POPTR_0011s15750.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc198t18; alternateUTRof:Thecc1EG026926t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g85t2" CDS complement(join(349188..350087,350181..350827, 350965..351195,351306..352045,352162..352388)) /locus_tag="TCM_026926" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG027696t5" /codon_start=1 /product="Glycosyl hydrolases family 31 protein isoform 1" /protein_id="EOY25523.1" /db_xref="Phytozome:POPTR_0011s15750.1" /db_xref="TAIR:AT5G11720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04931" /translation="MDRLDLKHLFRNLFVLLIIVCFSSSVHGGSEAVGYGYKLKSVSV DANGKWLTADLGLIRNSSVYGPDIQNLSLFASFETSNRLRIKVTDSGHERWEIGQEII PRQSQFPHRSLPENHRSSSAKYQGQTPKQQKENYYMSDPTSDLIFTLHNTTPFGFSVR RRSSGDILFDTSPDASDSGTFLVFKDQYIQLSSSLPQGRSSLYGLGEHTKRSFKLQHN DTLTLWNADLASANLDVNLYGSHPFYLDIRSASADGKVSAGTTHGVLLLNSNGMDIVY GGNRITYKIIGGVIDLYVFAGPLPDRVMEQYTQLIGRPAAMPYWSFGFHQCRYGYKNV SDIKGVVAGYAKARIPLEVMWTDIDYMDGFKDFTLDPVNFPKDQMKTFVDKLHQNDQK YVVIIDPGISVNSTYGTYIRGMQADIFIKRDGVPYLGQVWPGPVYFPDFVNPRTETYW AGEIKTFRDFLPVDGLWLDMNEISNFITSPPTPNSALDDPAYKINNQGIQRPINNRTV PAASLHFGNLTEYNVHNLYGLLECKATHAALINVTGKRPFILSRSTFVSSGKYAAHWT GDNVATWEDLAYTIPSILNFGLFGIPMVGADICGFSGDTTEDLCQRWIQLGAFYPFAR DHSDFNTIRQELYLWDSVAASARKVLGLRYRLLPYFYTLMYEAHQKGTPIARPLFFTF PQDIHTYEINSQFLLGKGIMVSPVVKSKAVSVDAYFPSGNWFDLFNYSNSVSANSGKY FTLAAPRDHINVHVREGNIIAMQGEARTTKAARMTPFQLLVAVSSTETMTGQVFLDDG EEVEMGVEGGKWSLVRFYGGISSSGDEVFVRSEVENGAFALSQKWMIERVTFIGLENV ERLKGYELSSGNNKTNLHANPLVKARLDKNAIFQIVEVSGLRQPVGQEFNLQLKTQKK " CDS complement(join(349188..350087,350181..350827, 350965..351195,351306..352045,352162..352388)) /locus_tag="TCM_026926" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG027696t5" /codon_start=1 /product="Glycosyl hydrolases family 31 protein isoform 1" /protein_id="EOY25525.1" /db_xref="Phytozome:POPTR_0011s15750.1" /db_xref="TAIR:AT5G11720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04931" /translation="MDRLDLKHLFRNLFVLLIIVCFSSSVHGGSEAVGYGYKLKSVSV DANGKWLTADLGLIRNSSVYGPDIQNLSLFASFETSNRLRIKVTDSGHERWEIGQEII PRQSQFPHRSLPENHRSSSAKYQGQTPKQQKENYYMSDPTSDLIFTLHNTTPFGFSVR RRSSGDILFDTSPDASDSGTFLVFKDQYIQLSSSLPQGRSSLYGLGEHTKRSFKLQHN DTLTLWNADLASANLDVNLYGSHPFYLDIRSASADGKVSAGTTHGVLLLNSNGMDIVY GGNRITYKIIGGVIDLYVFAGPLPDRVMEQYTQLIGRPAAMPYWSFGFHQCRYGYKNV SDIKGVVAGYAKARIPLEVMWTDIDYMDGFKDFTLDPVNFPKDQMKTFVDKLHQNDQK YVVIIDPGISVNSTYGTYIRGMQADIFIKRDGVPYLGQVWPGPVYFPDFVNPRTETYW AGEIKTFRDFLPVDGLWLDMNEISNFITSPPTPNSALDDPAYKINNQGIQRPINNRTV PAASLHFGNLTEYNVHNLYGLLECKATHAALINVTGKRPFILSRSTFVSSGKYAAHWT GDNVATWEDLAYTIPSILNFGLFGIPMVGADICGFSGDTTEDLCQRWIQLGAFYPFAR DHSDFNTIRQELYLWDSVAASARKVLGLRYRLLPYFYTLMYEAHQKGTPIARPLFFTF PQDIHTYEINSQFLLGKGIMVSPVVKSKAVSVDAYFPSGNWFDLFNYSNSVSANSGKY FTLAAPRDHINVHVREGNIIAMQGEARTTKAARMTPFQLLVAVSSTETMTGQVFLDDG EEVEMGVEGGKWSLVRFYGGISSSGDEVFVRSEVENGAFALSQKWMIERVTFIGLENV ERLKGYELSSGNNKTNLHANPLVKARLDKNAIFQIVEVSGLRQPVGQEFNLQLKTQKK " CDS complement(join(349188..350087,350181..350827, 350965..351195,351306..351861)) /locus_tag="TCM_026926" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG027696t5" /codon_start=1 /product="Glycosyl hydrolases family 31 protein isoform 2" /protein_id="EOY25524.1" /db_xref="Phytozome:POPTR_0011s15750.1" /db_xref="TAIR:AT5G11720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04931" /translation="MSDPTSDLIFTLHNTTPFGFSVRRRSSGDILFDTSPDASDSGTF LVFKDQYIQLSSSLPQGRSSLYGLGEHTKRSFKLQHNDTLTLWNADLASANLDVNLYG SHPFYLDIRSASADGKVSAGTTHGVLLLNSNGMDIVYGGNRITYKIIGGVIDLYVFAG PLPDRVMEQYTQLIGRPAAMPYWSFGFHQCRYGYKNVSDIKGVVAGYAKARIPLEVMW TDIDYMDGFKDFTLDPVNFPKDQMKTFVDKLHQNDQKYVVIIDPGISVNSTYGTYIRG MQADIFIKRDGVPYLGQVWPGPVYFPDFVNPRTETYWAGEIKTFRDFLPVDGLWLDMN EISNFITSPPTPNSALDDPAYKINNQGIQRPINNRTVPAASLHFGNLTEYNVHNLYGL LECKATHAALINVTGKRPFILSRSTFVSSGKYAAHWTGDNVATWEDLAYTIPSILNFG LFGIPMVGADICGFSGDTTEDLCQRWIQLGAFYPFARDHSDFNTIRQELYLWDSVAAS ARKVLGLRYRLLPYFYTLMYEAHQKGTPIARPLFFTFPQDIHTYEINSQFLLGKGIMV SPVVKSKAVSVDAYFPSGNWFDLFNYSNSVSANSGKYFTLAAPRDHINVHVREGNIIA MQGEARTTKAARMTPFQLLVAVSSTETMTGQVFLDDGEEVEMGVEGGKWSLVRFYGGI SSSGDEVFVRSEVENGAFALSQKWMIERVTFIGLENVERLKGYELSSGNNKTNLHANP LVKARLDKNAIFQIVEVSGLRQPVGQEFNLQLKTQKK" gene complement(353617..356280) /locus_tag="TCM_026927" /note="dbxref CacaoGD:Thecc1EG026927" mRNA complement(join(353617..354106,354345..354491, 354700..354805,354909..355105,355256..355348, 355467..355528,356092..356280)) /locus_tag="TCM_026927" /product="Fatty acid hydroxylase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021712001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027082t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021712001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12107t00001" mRNA complement(join(353617..354106,354345..354491, 354700..354805,354909..355105,355256..355348, 355467..355532,356092..356280)) /locus_tag="TCM_026927" /product="Fatty acid hydroxylase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021712001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027082t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021712001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b026044t1a2; alternateUTRof:Thecc1EG026927t1; inference alignment:Newbler:10:TSA:cgbaP2_g12107t00001" CDS complement(join(353987..354106,354345..354491, 354700..354805,354909..355105,355256..355348, 355467..355517)) /locus_tag="TCM_026927" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG027082t1" /codon_start=1 /product="Fatty acid hydroxylase 1 isoform 1" /protein_id="EOY25526.1" /db_xref="Phytozome:GSVIVT01021712001" /db_xref="TAIR:AT2G34770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0ILR7" /translation="MVKKPFTVDLNKPLVFQVGHLGEAYDKWVHQPVVSKECPRFFGN DFCELLTRTKWWVIPLVWLPVVCWFVSTSIQRGLTPTQAASAVAGGVFIWTLIEYTLH RFLFHMKTTSYWGNTLHFLLHGCHHKHPMDRLRLVFPPVATAILCVPVWSLFKLFSTP STTPALFAGGLLGYVIYDCTHYYLHHGKPSEGLSQTLKRYHLNHHFRVQSKGFGITSS IWDHVFGTYPAMRATEKSR" CDS complement(join(353987..354106,354345..354491, 354700..354805,354909..355105,355256..355348, 355467..355517)) /locus_tag="TCM_026927" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG027082t1" /codon_start=1 /product="Fatty acid hydroxylase 1 isoform 1" /protein_id="EOY25527.1" /db_xref="Phytozome:GSVIVT01021712001" /db_xref="TAIR:AT2G34770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0ILR7" /translation="MVKKPFTVDLNKPLVFQVGHLGEAYDKWVHQPVVSKECPRFFGN DFCELLTRTKWWVIPLVWLPVVCWFVSTSIQRGLTPTQAASAVAGGVFIWTLIEYTLH RFLFHMKTTSYWGNTLHFLLHGCHHKHPMDRLRLVFPPVATAILCVPVWSLFKLFSTP STTPALFAGGLLGYVIYDCTHYYLHHGKPSEGLSQTLKRYHLNHHFRVQSKGFGITSS IWDHVFGTYPAMRATEKSR" mobile_element 357446..357487 /note="source:CACAO_M_S_E101721_F266_scaffold_9 1460 1501" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 357732..359850 /locus_tag="TCM_026928" /note="dbxref CacaoGD:Thecc1EG026928" mRNA 357732..359850 /locus_tag="TCM_026928" /product="Ethylene-responsive nuclear / ethylene-regulated nuclear protein (ERT2)-like protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021709001" /inference="similar to AA sequence:Phytozome:POPTR_0001s46860.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07288t00001" CDS 358017..359261 /locus_tag="TCM_026928" /codon_start=1 /product="Ethylene-responsive nuclear / ethylene-regulated nuclear protein (ERT2)-like protein" /protein_id="EOY25528.1" /db_xref="Phytozome:POPTR_0001s46860.1" /db_xref="TAIR:AT4G20880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N5R4" /translation="MPFPWKKAKVTRISRLVADLHQSPKRGGSLVVETGFPTSLIDLF VKNRDRLRKSSKRKSSPSSSPPQMQTPPTLHQPSSPPKLFPSPPCKEELRSPDVDVGQ LVLVKRECEERIAFHAAFKIFLVVALAVSSRNLAVWFMVAAFLLVLVEFVGTRFFGFL RPESKMLFLDSWIQKGLLVLKRWDWEQGSAQELVVKQQGTLFSDSYGLTELEDDCVEE IQIAESKFDSVDKGCDSESLETQIKVEGMEKIREILICRSERSRSARIKANLIRKLVP KKLRNGKKQGKSNDTDEPCTQSGVEIDKSDKIEEGKQGPEADDGEDESQVEVEEESCK QVEELGDRISTCAQLLWVEESGMGVVKNKVGNDRKGKSGYLILFVIVLAGLVGGRGLA LLLTLVWCLIVRYIGFGGLRRC" mobile_element 360275..360337 /note="source:INTACT564_F256_scaffold_1-int 2955 3023" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 361082..365944 /locus_tag="TCM_026929" /note="dbxref CacaoGD:Thecc1EG026929" mRNA join(361082..361701,362428..362475,362735..362911, 363007..363157,363268..363354,363844..363968, 364412..364530,365301..365944) /locus_tag="TCM_026929" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400053105" /inference="similar to AA sequence:ricco:29747.m001067" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:PASA:2:TSA:puevd3b026046t1a3; inference alignment:Newbler:10:TSA:cgbaB_g05926t00001" mRNA join(361082..361701,362428..362475,362735..362911, 363007..363157,363268..363354,364412..364530, 365301..365944) /locus_tag="TCM_026929" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400053105" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400053105" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:PASA:2:TSA:puevd3b026046t1a2; inference alignment:Newbler:10:TSA:cgbaB_g05926t00001" mRNA join(361082..361701,362428..362475,362735..362911, 363007..363157,363268..363354,363844..363968, 364412..364530,365301..365412,365480..365790) /locus_tag="TCM_026929" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400053105" /inference="similar to AA sequence:ricco:29747.m001067" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05926t00001; inference alignment:Newbler:10:TSA:cgbaB_g05926t00001" CDS join(361402..361701,362428..362475,362735..362911, 363007..363157,363268..363354,363844..363968, 364412..364530,365301..365412,365480..365515) /locus_tag="TCM_026929" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29747.m001067" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1" /protein_id="EOY25529.1" /db_xref="TAIR:AT3G18210.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LV19" /translation="MSFDLTRKEPQQPTPPSAGCNGNGVAVLPSMATAHRLRLNPNTE HKPETYEGLQLEFSPLLFSSLERYLPPPMLSLSRDSKLNYMRDIILRYSPEGERTRVQ RHREYRQKIISHYQPLHRELYAMHASNFFVPSFLKAINENKEESFRSIMAEPTLGVFT FEMLQPHFCELLLSEVENFEKWVHETKFRIMRPNTMNKFGAVLDDFGLETMLDKLMED FIRPISKVFFSDVGGSTLDSHHGFVVEYGIDRDVELGFHVDDSEVTLNVCLGKQFSGG DLFFRGVRCDKHVNTETQSDEILDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWC RSSVFRELRKYQKDFSSWCGECQREKKERQRVSIAATKQELLKREGKPPT" CDS join(361402..361701,362428..362475,362735..362911, 363007..363157,363268..363354,363844..363968, 364412..364530,365301..365475) /locus_tag="TCM_026929" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29747.m001067" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 2" /protein_id="EOY25530.1" /db_xref="TAIR:AT3G18210.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LV19" /translation="MSFDLTRKEPQQPTPPSAGCNGNGVAVLPSMATAHRLRLNPNTE HKPETYEGLQLEFSPLLFSSLERYLPPPMLSLSRDSKLNYMRDIILRYSPEGERTRVQ RHREYRQKIISHYQPLHRELYAMHASNFFVPSFLKAINENKEESFRSIMAEPTLGVFT FEMLQPHFCELLLSEVENFEKWVHETKFRIMRPNTMNKFGAVLDDFGLETMLDKLMED FIRPISKVFFSDVGGSTLDSHHGFVVEYGIDRDVELGFHVDDSEVTLNVCLGKQFSGG DLFFRGVRCDKHVNTETQSDEILDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWC RSSVFRELRKYQKDFSSWCGECQREKKERQRVSIAATKQVKSKSIVFVENKNINSDCL L" CDS join(361402..361701,362428..362475,362735..362911, 363007..363157,363268..363354,364412..364470) /locus_tag="TCM_026929" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 3" /protein_id="EOY25531.1" /db_xref="Phytozome:PGSC0003DMP400053105" /db_xref="TAIR:AT3G18210.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LV19" /translation="MSFDLTRKEPQQPTPPSAGCNGNGVAVLPSMATAHRLRLNPNTE HKPETYEGLQLEFSPLLFSSLERYLPPPMLSLSRDSKLNYMRDIILRYSPEGERTRVQ RHREYRQKIISHYQPLHRELYAMHASNFFVPSFLKAINENKEESFRSIMAEPTLGVFT FEMLQPHFCELLLSEVENFEKWVHETKFRIMRPNTMNKFGAVLDDFGLETMLDKLMED FIRPISKVFFSDVGGSTLDSHHGFVVEYGIDRDVELGNFGLFPCSRTCSSSSRAP" mobile_element 364254..364328 /note="source:CACAO_M_E69634_F98_scaffold_9 1958 2030" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 364277..364335 /note="source:scaffold_5_CACTA_0596 7015 7073" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(364285..364333) /note="source:CACAO_M_E22886_F96_scaffold_3 689 737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(364334..364353) /note="source:scaffold_6_CACTA_0712 1373 1442" /mobile_element_type="transposon:TIR/CACTA" gene 366661..369715 /locus_tag="TCM_026930" /note="dbxref CacaoGD:Thecc1EG026930" mRNA join(366661..367311,367897..368166,368645..369715) /locus_tag="TCM_026930" /product="Tubulin beta-7 chain" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s46870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021786t1" /inference="similar to AA sequence:ricco:30075.m001163" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15416t1" CDS join(366918..367311,367897..368166,368645..369321) /locus_tag="TCM_026930" /note="dbxref ricco:30075.m001163; paralog of Thecc1EG021786t1" /codon_start=1 /product="Tubulin beta-7 chain" /protein_id="EOY25532.1" /db_xref="TAIR:AT5G23860.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q01GL4" /translation="MREILHIQGGQCGNQIGAKFWEVICDEHGIDNTGKYSGDSDLQL ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGLFGQIFRPDNFVFGQSGAGNNWA KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLA TPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR GSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQ NKNSSYFVEWIPHNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRK AFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADDEYEEEEEEEEEVPA" mobile_element complement(370140..370181) /note="source:CACAO_M_E65313_F266_scaffold_9 182 223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(370151..370221) /note="source:scaffold_2_CACTA_0245 3529 3592" /mobile_element_type="transposon:TIR/CACTA" gene 370465..371631 /locus_tag="TCM_026931" /note="dbxref CacaoGD:Thecc1EG026931" mRNA join(370465..370663,370910..371631) /locus_tag="TCM_026931" /product="Germin-like protein subfamily 1 member 18, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g08600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026073t1" /inference="similar to AA sequence:ricco:30075.m001165" /note="quality class is strong, express is none, homology is ortholog strong, intron is none, protein is complete" CDS join(370543..370663,370910..371445) /locus_tag="TCM_026931" /note="dbxref ricco:30075.m001165; paralog of Thecc1EG026073t1" /codon_start=1 /product="Germin-like protein subfamily 1 member 18, putative" /protein_id="EOY25533.1" /db_xref="TAIR:AT3G05950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFF9" /translation="MLPSSKMLTRIVSVLTCCLALASVHSTPLQDFCVAEPNSKVVVN GLACKDSELVVAEEFHLTGLHLTGNTSNPFGFKATPVTVAQLPGLNALGISMVRLDFA PWGLNPPHTHPRASEMLTVLEGTLEVGFITSNPENQLFKKVLNKGDVFVFPMGLIHFQ RNVGYGNAVAVGALNSESPGVITIANSVFGSNPSIPTDVLAKAFQVDQNVIFQLLAKF " gene 372939..378215 /locus_tag="TCM_026932" /note="dbxref CacaoGD:Thecc1EG026932" mRNA join(372939..373296,375885..376129,377564..377834, 377966..378215) /locus_tag="TCM_026932" /product="RmlC-like cupins superfamily protein" /inference="similar to AA sequence:ricco:30075.m001165" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(372957..373296,375885..376129,377564..377834, 377966..378006) /locus_tag="TCM_026932" /note="dbxref ricco:30075.m001165" /codon_start=1 /product="RmlC-like cupins superfamily protein" /protein_id="EOY25534.1" /db_xref="TAIR:AT5G38940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AWE4" /translation="MAAKTLFIALLALTCFVAFASGQNGFESGQSAFASGQRNSAVHK SVDDYKSDSEDVSLKPKQIIETDDRGSAAISDDHINDHRVGAVPNQSYRRHSPHQNFH QAADPKHQPKKGNLEVGFITSNPVNQLFKKVLNKGDVFVFPMGLIHVQRNVGYGNDVA VGALNSESPGVITIANSVFGSNPSIPSDVLGKAFQDAYASGQSAFASGERNSAVHKSV DDYKSDNEDVSLKPKQIIETDNRGSAAISDDHINDHRVGAVPNQSYRRHSPHQNFHQA ADPKHQPKEVLPVIISPRLPRI" gene 379239..382328 /locus_tag="TCM_026933" /note="dbxref CacaoGD:Thecc1EG026933" mRNA join(379239..379697,381295..382328) /locus_tag="TCM_026933" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(379398..379697,381295..381642) /locus_tag="TCM_026933" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25535.1" /translation="MDINPMAANNTFADSLAKSGVEKVDTMVFLGRLLHRKVGHCLLY WTWRRWCCTDCVCDVWSYIYGVMLSWPLGLMSVGNGCPWCTGRPLDGFGWVCLCLQQY LLQMAAKTLFIALLALTCFVALASGHRGGSAQKSPDNYKPDSEDVSLKPTKAIETDDR GNAAISNDHRDGAVPSQSHHTHSSHQNFHQAADSNTNQKEGTSAIISFISSLITG" gene complement(380338..383230) /locus_tag="TCM_026934" /note="dbxref CacaoGD:Thecc1EG026934" mRNA complement(join(380338..380633,380971..381040, 382496..382557,382653..382801,383050..383230)) /locus_tag="TCM_026934" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(380632..380633,380971..381040, 382496..382557,382653..382801,383050..383057)) /locus_tag="TCM_026934" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25536.1" /translation="MVWSSHIHHPQISWQPPATGELKFNVDGSAKGKPGLAGCGDILR NSELYVAHVNGDSYQPWNHWQIFNEIIDWVYQILFRPLVLNFPLPIHVQLYS" mobile_element complement(383321..383413) /note="source:INTACT44_F119_scaffold_6-int 8084 8178" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 383569..385798 /locus_tag="TCM_026935" /note="dbxref CacaoGD:Thecc1EG026935" mRNA join(383569..383734,384293..384365,384469..384509, 384607..384870,385010..385141,385233..385798) /locus_tag="TCM_026935" /product="Phosphatase 2c, putative" /inference="alignment:exonerate- protein:2:ricco:30075.m001168" /inference="similar to AA sequence:Phytozome:Glyma08g08620.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS join(383678..383734,384293..384365,384469..384509, 384607..384870,385010..385141,385233..385592) /locus_tag="TCM_026935" /codon_start=1 /product="Phosphatase 2c, putative" /protein_id="EOY25537.1" /db_xref="Phytozome:Glyma08g08620.1" /db_xref="TAIR:AT2G34740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SB19" /translation="MGYSFRISLSSSLLTPHEQEEPHSSREGEEDDVEELQIPHVTHE YLRTHLFDKILRENPETSNQKSLQATNDEILEDVARSRGGSTSVTAILIDRQKRIVAN VGDSRAILCRGGALKQLTTDHEPQKEKELVESRDGFVSEMPGNLAMTRAFGDGKLKEH ITSEPDVRVEMIDPNADEFFIVASDGLWKVMSNEEAFDHIREFDDAQETSEELIREAL ARGSNSDLEVESDSLNAILWTRHHSKVPWRMKLISNAIETLSKSFRKVTFNHISREIN LIADGLAKAGVLRAVNFSTFLQPPGMDPSSEA" gene complement(385800..389794) /locus_tag="TCM_026936" /note="dbxref CacaoGD:Thecc1EG026936" mRNA complement(join(385800..387715,387816..387884, 387981..388129,388417..388629,389211..389794)) /locus_tag="TCM_026936" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400052745" /inference="similar to AA sequence:Phytozome:POPTR_0011s16640.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g97t3" CDS complement(join(386320..387715,387816..387884, 387981..388129,388417..388629,389211..389414)) /locus_tag="TCM_026936" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY25538.1" /db_xref="Phytozome:POPTR_0011s16640.1" /db_xref="TAIR:AT4G20900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLZ3" /translation="MWSNEKNLPSRSRGFFTPQPPAWKKAQSSVLPMSERKRISPADQ ADSFHVIHKVPASDSPYGRAKHVQLIDKDPSKAISLFWAAINAGDRVDSALKDMAVVM KQLNRSDEAIEAIKSFRHLCPHDSQESLDNVLVELYKRSGRVEEEIEMLQNKLRNIEG GTVFGGKRTKIARSQGKKIQITIEQEKSRILGNLAWAYLQQHNYGIAEQHYRKALSLE PDMNKQCNLAICLMHMNRISEAKSLLQDVKASSGNEQMDESHSKSYERALDMLIQVES QSMLEPVAKEPDKGREIQRPSTPCRDRGLKEAGIFLPRNEDNISGFMGRRRLPYAHWE GKMLIDEQNGESYRRNPLEKNDNFPGYDDRSSKCTPIGQKGYLQSSPQSMFTEKWRIG SYWESPCEGYSTGEEVGSAQKKIYASSAASKKNSEALFTQPRRCSQGFNNADQKRGGR WGEDTVRNSIRKLSFEQSLTSESEPLHSIQNLNEKPQASNNGKSENSATGPVEEEVQE GLSGVLFTQPRNSLLWLNNRDQRMERWAEESVGCPFRKLSFEKNITGVTPHSADGLNG EPLFSSKDESEIGLERPANAPNKKSWADMVEEEEKEELLNSYDGFNREEVFNDENLNS NIIYPRPDCKDHIGNITQQLESFDMKGGDNASANTVSSRRNRLPVFRDITSS" gene 390719..399789 /locus_tag="TCM_026937" /note="dbxref CacaoGD:Thecc1EG026937" mRNA join(390719..391260,392079..392379,393822..393911, 394591..395039,395176..395418,396178..397133, 398035..398183,398263..398379,398601..398738, 398828..399789) /locus_tag="TCM_026937" /product="Double-stranded RNA binding protein-related / DsRBD protein-related, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene28872" /inference="similar to AA sequence:ricco:30075.m001170" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc869t3" mRNA join(391250..391260,392079..392379,393822..393911, 394591..395039,395176..395418,396178..397133, 398035..398183,398263..398379,398601..398738, 398828..399005,399155..399713) /locus_tag="TCM_026937" /product="Double-stranded RNA binding protein-related / DsRBD protein-related, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene28872" /inference="similar to AA sequence:ricco:30075.m001170" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc869t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc869t3" CDS join(392107..392379,393822..393911,394591..395039, 395176..395418,396178..397133,398035..398183, 398263..398379,398601..398738,398828..399277) /locus_tag="TCM_026937" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30075.m001170" /codon_start=1 /product="Double-stranded RNA binding protein-related / DsRBD protein-related, putative isoform 1" /protein_id="EOY25539.1" /db_xref="TAIR:AT4G20910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SB21" /translation="METGGSLAHTIRKPTLTPKAIIHQKFGSKASYKVEEVEEPTQNG CPGLAILQKGPCLYRCSLELPDFSVVSGSFKKKKDAEQSAAQMALEKLGIRPSVDNLT AEEAWTDLIARVKYIFSNEFLAGLHPLSSHFKAALCRVGDHDGSIPASVIAICDGKLN NLCKIINPKVESHPFMVVSYIMRAATGLPELVVNPERQLSIRKENPYPPDVIESSVSQ QSESITTMAIYIPCSPEKAVEPVILNISPKGYYLDVIAQKLGLSDANEILISRTIGKA SSETRFYFAASKSYLLEMSSDLLNAKAVKFGGPLNARASYICGQDIYGDSILASIGYT WKGQDLFHEDVTLQSYYRMLISKIPSGAYKLSREAILAAELPLTFTTKTNWRGSYPRE ILCSFCRQHWLLEPVFSTSSIPKKASLELSRLNKKLKVSESAEQEVEYANGHDIVDAD AKSVGMGSSFICEVKLYSKCQDLILECASNVLYKKQNDAVQNASLKVLSWLNAYFKDI DMPLEKLKQLANVFDIKFYPQNFSKEVVSCLSVENFQNHDTLGGKVPESNGISIPNDV VEDDVSSIDIEGPDSGVCPSYGSLLCVCYSASLVTKGELQKELLESAEEFEFEMGTGA VIPCLEAVVTKMSIGQSTCFYTELPSQDLVLAAAKDSANALAFLSSPCWLEYSIILLQ VTEPPEDRMEQALFSPPLSKQRVEYALQHIKDSCATSLVDFGCGSGSLLESLLDYPTS LETIVGVDLSKKSLSRAAKVLHSKLTMMSDPEAPCKSIKSAVLYDGSITDFDSRLCGF DLGTCLEVIEHMEEDQACLFGDVVLSSFRPKILVVSTPNYEYNVILQRSNITSQEDDP EEKIYSQSCKFRNHDHKFEWTREQFNHWASELAVRHNYSVEFSGVGGSADLEPGFASQ IAVFRRVFQPKEDDLQDDEGLACQYRVVWEWNRSKPALTN" CDS join(392107..392379,393822..393911,394591..395039, 395176..395418,396178..397133,398035..398183, 398263..398379,398601..398738,398828..399005, 399155..399168) /locus_tag="TCM_026937" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30075.m001170" /codon_start=1 /product="Double-stranded RNA binding protein-related / DsRBD protein-related, putative isoform 2" /protein_id="EOY25540.1" /db_xref="TAIR:AT4G20910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SB21" /translation="METGGSLAHTIRKPTLTPKAIIHQKFGSKASYKVEEVEEPTQNG CPGLAILQKGPCLYRCSLELPDFSVVSGSFKKKKDAEQSAAQMALEKLGIRPSVDNLT AEEAWTDLIARVKYIFSNEFLAGLHPLSSHFKAALCRVGDHDGSIPASVIAICDGKLN NLCKIINPKVESHPFMVVSYIMRAATGLPELVVNPERQLSIRKENPYPPDVIESSVSQ QSESITTMAIYIPCSPEKAVEPVILNISPKGYYLDVIAQKLGLSDANEILISRTIGKA SSETRFYFAASKSYLLEMSSDLLNAKAVKFGGPLNARASYICGQDIYGDSILASIGYT WKGQDLFHEDVTLQSYYRMLISKIPSGAYKLSREAILAAELPLTFTTKTNWRGSYPRE ILCSFCRQHWLLEPVFSTSSIPKKASLELSRLNKKLKVSESAEQEVEYANGHDIVDAD AKSVGMGSSFICEVKLYSKCQDLILECASNVLYKKQNDAVQNASLKVLSWLNAYFKDI DMPLEKLKQLANVFDIKFYPQNFSKEVVSCLSVENFQNHDTLGGKVPESNGISIPNDV VEDDVSSIDIEGPDSGVCPSYGSLLCVCYSASLVTKGELQKELLESAEEFEFEMGTGA VIPCLEAVVTKMSIGQSTCFYTELPSQDLVLAAAKDSANALAFLSSPCWLEYSIILLQ VTEPPEDRMEQALFSPPLSKQRVEYALQHIKDSCATSLVDFGCGSGSLLESLLDYPTS LETIVGVDLSKKSLSRAAKVLHSKLTMMSDPEAPCKSIKSAVLYDGSITDFDSRLCGF DLGTCLEVIEHMEEDQACLFGDVVLSSFRPKILVVSTPNYEYNVILQRSNITSQEDDP EEKIYSQSYCCL" mRNA join(392224..392379,393822..393911,394591..395039, 395176..395418,396178..397133,398035..398183, 398263..398379,398601..398741,398828..399694) /locus_tag="TCM_026937" /product="Double-stranded RNA binding protein-related / DsRBD protein-related, putative isoform 3" /inference="alignment:exonerate-protein:2:frave:gene28872" /inference="similar to AA sequence:Phytozome:POPTR_0001s46980.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g115t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc869t3" CDS join(392365..392379,393822..393911,394591..395039, 395176..395418,396178..397133,398035..398183, 398263..398379,398601..398741,398828..399277) /locus_tag="TCM_026937" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Double-stranded RNA binding protein-related / DsRBD protein-related, putative isoform 3" /protein_id="EOY25541.1" /db_xref="Phytozome:POPTR_0001s46980.1" /db_xref="TAIR:AT4G20910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GH09" /translation="MALEKLGIRPSVDNLTAEEAWTDLIARVKYIFSNEFLAGLHPLS SHFKAALCRVGDHDGSIPASVIAICDGKLNNLCKIINPKVESHPFMVVSYIMRAATGL PELVVNPERQLSIRKENPYPPDVIESSVSQQSESITTMAIYIPCSPEKAVEPVILNIS PKGYYLDVIAQKLGLSDANEILISRTIGKASSETRFYFAASKSYLLEMSSDLLNAKAV KFGGPLNARASYICGQDIYGDSILASIGYTWKGQDLFHEDVTLQSYYRMLISKIPSGA YKLSREAILAAELPLTFTTKTNWRGSYPREILCSFCRQHWLLEPVFSTSSIPKKASLE LSRLNKKLKVSESAEQEVEYANGHDIVDADAKSVGMGSSFICEVKLYSKCQDLILECA SNVLYKKQNDAVQNASLKVLSWLNAYFKDIDMPLEKLKQLANVFDIKFYPQNFSKEVV SCLSVENFQNHDTLGGKVPESNGISIPNDVVEDDVSSIDIEGPDSGVCPSYGSLLCVC YSASLVTKGELQKELLESAEEFEFEMGTGAVIPCLEAVVTKMSIGQSTCFYTELPSQD LVLAAAKDSANALAFLSSPCWLEYSIILLQVTEPPEDRMEQALFSPPLSKQRVEYALQ HIKDSCATSLVDFGCGSGSLLESLLDYPTSLETIVGVDLSKKSLSRAAKVLHSKLTMM SDPEAPCKSIKSAVLYDGSITDFDSRLCGFDLGTCLEVVIEHMEEDQACLFGDVVLSS FRPKILVVSTPNYEYNVILQRSNITSQEDDPEEKIYSQSCKFRNHDHKFEWTREQFNH WASELAVRHNYSVEFSGVGGSADLEPGFASQIAVFRRVFQPKEDDLQDDEGLACQYRV VWEWNRSKPALTN" gene complement(399790..406944) /locus_tag="TCM_026938" /note="dbxref CacaoGD:Thecc1EG026938" mRNA complement(join(399790..400199,400662..400741, 401578..401662,402397..402539,404301..404383, 404912..405062,405686..405800,405997..406085, 406557..406944)) /locus_tag="TCM_026938" /product="6-phosphogluconate dehydrogenase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s46990.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s46990.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:PASA:2:TSA:puevd3b026055t1a2; inference alignment:Newbler:10:TSA:cgbaB_g01312t00001" mRNA complement(join(399790..400199,400662..400741, 401578..401662,402397..402539,403344..403439, 404301..404383,404912..405062,405686..405800, 405997..406085,406557..406944)) /locus_tag="TCM_026938" /product="6-phosphogluconate dehydrogenase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s46990.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s46990.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01312t00001" CDS complement(join(400109..400199,400662..400741, 401578..401662,402397..402539,404301..404383, 404912..405062,405686..405800,405997..406085, 406557..406721)) /locus_tag="TCM_026938" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="6-phosphogluconate dehydrogenase family protein isoform 2" /protein_id="EOY25543.1" /db_xref="Phytozome:POPTR_0001s46990.1" /db_xref="TAIR:AT4G20930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SUC0" /translation="MAMRMRTYGHRLRALLSNSFSKVEHQSQQLLVSSSPFHSFPTRS FASSNLSSHFESVGFIGLGNMGSRMANNLLKAGYKVTVHDVNCNVMKMYSDMGVSTKQ TPFEVAEASEVVITMLPSSSHVLEVYNGPNGLLHGGSLLTPRLLIDSSTIDPQTSRKL SVSVSNCTLKDTKDNWESPLMLDAPVSGGVVAAEAGTLTFMAAKICNNLAVAVSMLGV SEALALGQSLGITASTLTKIFNCSSARCWSSDSYNPVPGVMPGVPSSRNYSGGFASKL MAKDLNLAAASAEEVGVKSPLTFLAQNIYAEICENGHESEDFSCVFHHYYSGKGEPN" CDS complement(join(400109..400199,400662..400741, 401578..401662,402397..402539,403344..403439, 404301..404383,404912..405062,405686..405800, 405997..406085,406557..406721)) /locus_tag="TCM_026938" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="6-phosphogluconate dehydrogenase family protein isoform 1" /protein_id="EOY25542.1" /db_xref="Phytozome:POPTR_0001s46990.1" /db_xref="TAIR:AT4G20930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SUC0" /translation="MAMRMRTYGHRLRALLSNSFSKVEHQSQQLLVSSSPFHSFPTRS FASSNLSSHFESVGFIGLGNMGSRMANNLLKAGYKVTVHDVNCNVMKMYSDMGVSTKQ TPFEVAEASEVVITMLPSSSHVLEVYNGPNGLLHGGSLLTPRLLIDSSTIDPQTSRKL SVSVSNCTLKDTKDNWESPLMLDAPVSGGVVAAEAGTLTFMVGGSEDAYLAAKSLLLS MGKNAIFCGGPGTGSAAKICNNLAVAVSMLGVSEALALGQSLGITASTLTKIFNCSSA RCWSSDSYNPVPGVMPGVPSSRNYSGGFASKLMAKDLNLAAASAEEVGVKSPLTFLAQ NIYAEICENGHESEDFSCVFHHYYSGKGEPN" mRNA complement(join(<400121..400199,400662..400741, 401578..401634,402489..402539,403344..403439, 404301..404383,404912..405062,405686..405800, 405997..406085,406557..406732)) /locus_tag="TCM_026938" /product="6-phosphogluconate dehydrogenase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s46990.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s46990.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01962t00002; inference alignment:Newbler:10:TSA:cgbaB_g01312t00001" CDS complement(join(<400121..400199,400662..400741, 401578..401634,402489..402539,403344..403439, 404301..404383,404912..405062,405686..405800, 405997..406085,406557..406721)) /locus_tag="TCM_026938" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="6-phosphogluconate dehydrogenase family protein isoform 3" /protein_id="EOY25544.1" /db_xref="Phytozome:POPTR_0001s46990.1" /db_xref="TAIR:AT4G20930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SUC0" /translation="MAMRMRTYGHRLRALLSNSFSKVEHQSQQLLVSSSPFHSFPTRS FASSNLSSHFESVGFIGLGNMGSRMANNLLKAGYKVTVHDVNCNVMKMYSDMGVSTKQ TPFEVAEASEVVITMLPSSSHVLEVYNGPNGLLHGGSLLTPRLLIDSSTIDPQTSRKL SVSVSNCTLKDTKDNWESPLMLDAPVSGGVVAAEAGTLTFMVGGSEDAYLAAKSLLLS MGKNAIFCGGPGTGSAAKICNNLAVAVSMLGVMPGVPSSRNYSGGFASKLMAKDLNLA AASAEEVGVKSPLTFLAQNIYAEICENGHESEDFSCVFHHYYSGKG" mRNA complement(join(<400166..400199,400662..400741, 401578..401662,402397..402493,404912..405062, 405686..405800,405997..406085,406557..406889)) /locus_tag="TCM_026938" /product="6-phosphogluconate dehydrogenase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s46990.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021668001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc91t14_C2; inference alignment:Newbler:10:TSA:cgbaB_g01312t00001" CDS complement(join(<400166..400199,400662..400741, 401578..401662,402397..402493,404912..405062, 405686..405800,405997..406085,406557..406721)) /locus_tag="TCM_026938" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="6-phosphogluconate dehydrogenase family protein isoform 4" /protein_id="EOY25545.1" /db_xref="Phytozome:GSVIVT01021668001" /db_xref="TAIR:AT4G20930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SUC0" /translation="MAMRMRTYGHRLRALLSNSFSKVEHQSQQLLVSSSPFHSFPTRS FASSNLSSHFESVGFIGLGNMGSRMANNLLKAGYKVTVHDVNCNVMKMYSDMGVSTKQ TPFEVAEASEVVITMLPSSSHVLEVYNGPNGLLHGGSLLTPRLLIDSSTIDPQTSRKL SVSVSNCTLKDTKGVSEALALGQSLGITASTLTKIFNCSSARCWSSDSYNPVPGVMPG VPSSRNYSGGFASKLMAKDLNLAAASAEEVGVKSPLTFLAQNIYAEICENGHES" mRNA complement(join(<402401..402539,403344..403439, 404301..404383,404912..405062,405686..405800, 405997..406085,406557..406915)) /locus_tag="TCM_026938" /product="6-phosphogluconate dehydrogenase family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s46990.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s46990.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc105t10; inference alignment:Newbler:10:TSA:cgbaB_g01312t00001" CDS complement(join(<402402..402539,403344..403439, 404301..404383,404912..405062,405686..405800, 405997..406085,406557..406721)) /locus_tag="TCM_026938" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="6-phosphogluconate dehydrogenase family protein isoform 5" /protein_id="EOY25546.1" /db_xref="Phytozome:POPTR_0001s46990.1" /db_xref="TAIR:AT4G20930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SUC0" /translation="MAMRMRTYGHRLRALLSNSFSKVEHQSQQLLVSSSPFHSFPTRS FASSNLSSHFESVGFIGLGNMGSRMANNLLKAGYKVTVHDVNCNVMKMYSDMGVSTKQ TPFEVAEASEVVITMLPSSSHVLEVYNGPNGLLHGGSLLTPRLLIDSSTIDPQTSRKL SVSVSNCTLKDTKDNWESPLMLDAPVSGGVVAAEAGTLTFMVGGSEDAYLAAKSLLLS MGKNAIFCGGPGTGSAAKICNNLAVAVSMLGVSEALALGQSLGITASTLTKIFNCSSA RCW" mobile_element complement(404036..404096) /note="source:scaffold_9_CACTA_0920 3054 3115" /mobile_element_type="transposon:TIR/CACTA" mobile_element 404667..404715 /note="source:scaffold_5_CACTA_0580 13310 13358" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(407076..407420) /note="source:CACAO_M_E57291_F76_scaffold_8 2204 2549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(407638..407697) /note="source:scaffold_4_CACTA_0493 1913 1972" /mobile_element_type="transposon:TIR/CACTA" gene 409329..415071 /locus_tag="TCM_026939" /note="dbxref CacaoGD:Thecc1EG026939" mRNA join(409329..409847,410059..411528,411676..413211, 414229..415071) /locus_tag="TCM_026939" /product="Leucine-rich receptor-like protein kinase family protein" /inference="alignment:exonerate- protein:2:ricco:30075.m001172" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042019t3" /inference="similar to AA sequence:ricco:30075.m001172" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g708t2" CDS join(410472..411528,411676..413211,414229..414812) /locus_tag="TCM_026939" /note="dbxref ricco:30075.m001172; paralog of Thecc1EG042019t3" /codon_start=1 /product="Leucine-rich receptor-like protein kinase family protein" /protein_id="EOY25547.1" /db_xref="TAIR:AT4G20940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JIJ5" /translation="MKLFKFLVLSLFFLSAMGQLPSQDILALLEFKKGIKHDPTGYVL DSWNEESIDFDGCPSSWNGIVCNGGNVAGVILDNLSLSADADLSVFSNLTKLVKLSMT NNSITGIIPDNIGDFKSLEFLDVSNNLFSSILPPGIGKLGSLRNLSLAGNNFSGVVPD TISELVSIQSLDLSRNSLSGSLPTSVVKLDELLYLNLSSNQFTKRIPKGFELISGLQV LDLHGNMLDGSLDGEFFLLSNASHVDLSRNMLQSSSSEKSLPGISESIKYLNLSHNQL TGSLVGEAELRLFGNLEVLDLSYNQLSGELPGFNFAYDLQVLKLSNNRFSGFIPNVLL KGDSLLLTELDLSGNNLSGPVSMIMSTNLQILNLSSNGLTGELPLLTGSCAVLDLSNN KLEGNLTRMVHWGNIEYLDLSQNLLTGSIPEVTPQFLRLNHLNLSHNSLSSSLPKVIM QYPKLRVLDLSFNQLDGPLLNDLLNLATLEELHLGNNLISGAIEFSPSSESNLHALDL SHNRLNGYFPSQFGSLAGLKLLNLAGNNLSGSLPSSMADMKSLSSLDISQNYFTGSLP NKVPNGLRSFNVSYNNLSGVVPENLRKFPTSSFYPGNAKLHFPSGPPGSNNAPGEHSR RKPINTIVKWVIVVSCVVALIILILLAIFLHYICLSRRTPPEHVTSKDVRKRAPTNPS SIAGTESGGALVVSAEDLVSSRKESSDISPSEKMAAVTGYSPSKATHLSWSPESGDSF TAEHLARLDVRSPDRLVGELHFLDDTITLTPEELSRAPAEVLGRSSHGTSYRATLDNG VFLTVKWLREGVAKQRKEFAKEAKKFSNIRHPNVVGLRGYYWGPTQHEKLILSDYISP GSLASFLYDRPGRKGPPLSWAQRLKIAVDVARGLNYLHFDRAVPHGNLKATNVLLDGP DLNARIADYCLHRLMTQAGTVEQILDSGLLGYRAPELADTKKPLLSFKSDVYAFGVIL LELLTGKCAGDVIPGEEEGIDLTEWVRLRVAEVCGTDCFDSALAQEMGNPAAEKGMKE VLGIASRCIRSVSERPGIKTIYEDLSSI" gene complement(415395..424491) /locus_tag="TCM_026940" /note="dbxref CacaoGD:Thecc1EG026940" mRNA complement(join(415395..416043,416402..416452, 417356..417448,417938..418013,418184..418300, 418448..418512,419477..419590,420948..421046, 422826..422917,423452..423575,423888..424055, 424150..424491)) /locus_tag="TCM_026940" /product="GTP binding" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g02870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032434t2" /inference="similar to AA sequence:ricco:30075.m001173" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14584t00001" CDS complement(join(415945..416043,416402..416452, 417356..417448,417938..418013,418184..418300, 418448..418512,419477..419590,420948..421046, 422826..422917,423452..423575,423888..424055, 424150..424236)) /locus_tag="TCM_026940" /note="dbxref ricco:30075.m001173; paralog of Thecc1EG032434t2" /codon_start=1 /product="GTP binding" /protein_id="EOY25548.1" /db_xref="TAIR:AT1G30580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9NTK5" /translation="MPPKAAKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTL TKLSIPAENFPFCTIEPNEARVNVPDGRFDWLCQLYKPKNEVSAFLEIHDIAGLVRGA HQGQGLGNSFLSHIRAVDGIFHVLRAFEDSDIIHVDDSVDPVRDLETISAELRLKDVE FIEKKVEDLEKSMKRSNDKQLKIELELCQKVKSWLEDGKDIRLGDWKAADIEILNTFQ LLSAKPVVYLVNMTEKDYQRKKNKFLPKIHAWVQEHGGEPIIPFSGVFERNLVDMESE EAAKYCEENKLQSALPKIIKTGFSAINLIYFFTAGADEVKCWQIRRQTKAPQAAGAIH TDFERGFICAEVMKFEDLKELGNESAVKAAGKYRQEGKTYVVQDGDIIFFKFNVSGGG KK" misc_feature complement(join(416027..416043,416402..417100)) /locus_tag="TCM_026940" /note="Gene fragment of Thecc1EG026940t1; dbxref gnl|CacaoGD|Thecc1EG026940t1; quality class is mediumpartial-partof is thecc1eg026940t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc271t2; dbxref CacaoGD:Thecc1EG026941t1" mobile_element complement(420380..420825) /note="source:CACAO_M_E52705_F118_scaffold_8 1 509" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(425768..428602) /locus_tag="TCM_026942" /note="dbxref CacaoGD:Thecc1EG026942" mRNA complement(join(425768..426224,427148..427307, 427824..428602)) /locus_tag="TCM_026942" /product="Chitinase family protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G05850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021326t1" /inference="similar to AA sequence:TAIR:AT1G05850.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02020t00001" CDS complement(join(425807..426224,427148..427307, 427824..428214)) /locus_tag="TCM_026942" /note="paralog of Thecc1EG021326t1" /codon_start=1 /product="Chitinase family protein" /protein_id="EOY25549.1" /db_xref="TAIR:AT1G05850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LSP9" /translation="MAHFNRAIALILTVALVANLAVTGNADGDKKIQVKTVKGKKVCL QGWECNVWSVYCCNQTISDIFQVYQFENLFSKRNSPVAHAVGFWDYQSFILAAADYEH LGFGTTGGKLMQMKEIAAFLGHVGAKTSCGYGVATGGPLAWGLCYNREMSPSQDYCDD SYKYVYPCAPGAQYYGRGALPIYWNYNYGAVGEALKVDLLNHPEYIEQNATLAFQAAI WRWITPIKKKQPSAHDIFVGNWKPTKNDTLAKRGPAFGTTMNVLYGDYLCGKGDNDPM NTIVSHYLYYLDLMGIGREEAGPHDELTCAEQVAFNPTVAPKIESS" gene 430366..435901 /locus_tag="TCM_026943" /note="dbxref CacaoGD:Thecc1EG026943" mRNA join(430366..430524,431161..431580,431787..431920, 431995..432054,432185..432412,433056..433235, 434761..435012,435501..435901) /locus_tag="TCM_026943" /product="Mannose-1-phosphate guanylyltransferase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021663001" /inference="similar to AA sequence:Phytozome:GSVIVT01021663001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b026059t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g05372t00001" mRNA join(430454..430524,431161..431580,431799..431920, 431995..432054,432185..432412,433056..433235, 434761..435012,435501..435901) /locus_tag="TCM_026943" /product="Mannose-1-phosphate guanylyltransferase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021663001" /inference="similar to AA sequence:Phytozome:GSVIVT01021663001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b026059t1a3; alternateUTRof:Thecc1EG026943t1; inference alignment:Newbler:10:TSA:cgbaP2_g05372t00001" mRNA join(430467..430524,430710..430764,431161..431580, 431799..431920,431995..432054,432185..432412, 433056..433235,434761..435012,435501..435866) /locus_tag="TCM_026943" /product="Mannose-1-phosphate guanylyltransferase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021663001" /inference="similar to AA sequence:Phytozome:GSVIVT01021663001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05372t00001" mRNA join(430488..430524,431161..431580,431799..431920, 431992..432054,432185..432412,433056..433235, 434761..435012,435501..435901) /locus_tag="TCM_026943" /product="Mannose-1-phosphate guanylyltransferase, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021663001" /inference="similar to AA sequence:Phytozome:GSVIVT01021663001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g153t4; inference alignment:Newbler:10:TSA:cgbaP2_g05372t00001" CDS join(431490..431580,431787..431920,431995..432054, 432185..432412,433056..433235,434761..435012, 435501..435695) /locus_tag="TCM_026943" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Mannose-1-phosphate guanylyltransferase, putative isoform 2" /protein_id="EOY25551.1" /db_xref="Phytozome:GSVIVT01021663001" /db_xref="TAIR:AT4G26850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLY2" /translation="MVTMKWLEDNSFPVKNGKCEQLIHSHSFLQEIFTDTNFPMYCFG SQSIEEDNSFEGLSCIAEEEQSILDAVLLSQWEDRMRKGCFRYDVTASEIKAIAGKMK FLSQLNEGQITGHLSKPEGNTLREWDPFAFDCMRQPEELLFCVSSSKKAKSELIPSAS VPDSAILVIINVTPVEYGHVFLVPCTTNRLYQFLDPRSVELVTRVAAEINNCSFRVFY DCCRPNRSNVYFQACYFPDPLPVEFRPVDTVYSGGRRGIHICSVIDYPIKTLSFQTTH NLKIMAAAICEICSHLEEKNVQYNLMITDSGKKILLFLQRSFAASNAISAWECGGYFL FRCRYEFDQVTEDAMLKRLSSFSLDDDNFEAVKQLCCSIASKFDS" CDS join(431490..431580,431799..431920,431992..432054, 432185..432412,433056..433235,434761..435012, 435501..435695) /locus_tag="TCM_026943" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Mannose-1-phosphate guanylyltransferase, putative isoform 4" /protein_id="EOY25553.1" /db_xref="Phytozome:GSVIVT01021663001" /db_xref="TAIR:AT4G26850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLY2" /translation="MVTMKWLEDNSFPVKNGKCEQLIHSHSFLQDTNFPMYCFGSQSI EEDNSFEGLSCIAEEEQSILDAVLLSQQWEDRMRKGCFRYDVTASEIKAIAGKMKFLS QLNEGQITGHLSKPEGNTLREWDPFAFDCMRQPEELLFCVSSSKKAKSELIPSASVPD SAILVIINVTPVEYGHVFLVPCTTNRLYQFLDPRSVELVTRVAAEINNCSFRVFYDCC RPNRSNVYFQACYFPDPLPVEFRPVDTVYSGGRRGIHICSVIDYPIKTLSFQTTHNLK IMAAAICEICSHLEEKNVQYNLMITDSGKKILLFLQRSFAASNAISAWECGGYFLFRC RYEFDQVTEDAMLKRLSSFSLDDDNFEAVKQLCCSIASKFDS" CDS join(431490..431580,431799..431920,431995..432054, 432185..432412,433056..433235,434761..435012, 435501..435695) /locus_tag="TCM_026943" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Mannose-1-phosphate guanylyltransferase, putative isoform 1" /protein_id="EOY25550.1" /db_xref="Phytozome:GSVIVT01021663001" /db_xref="TAIR:AT4G26850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLY2" /translation="MVTMKWLEDNSFPVKNGKCEQLIHSHSFLQDTNFPMYCFGSQSI EEDNSFEGLSCIAEEEQSILDAVLLSQWEDRMRKGCFRYDVTASEIKAIAGKMKFLSQ LNEGQITGHLSKPEGNTLREWDPFAFDCMRQPEELLFCVSSSKKAKSELIPSASVPDS AILVIINVTPVEYGHVFLVPCTTNRLYQFLDPRSVELVTRVAAEINNCSFRVFYDCCR PNRSNVYFQACYFPDPLPVEFRPVDTVYSGGRRGIHICSVIDYPIKTLSFQTTHNLKI MAAAICEICSHLEEKNVQYNLMITDSGKKILLFLQRSFAASNAISAWECGGYFLFRCR YEFDQVTEDAMLKRLSSFSLDDDNFEAVKQLCCSIASKFDS" CDS join(431490..431580,431799..431920,431995..432054, 432185..432412,433056..433235,434761..435012, 435501..435695) /locus_tag="TCM_026943" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Mannose-1-phosphate guanylyltransferase, putative isoform 1" /protein_id="EOY25552.1" /db_xref="Phytozome:GSVIVT01021663001" /db_xref="TAIR:AT4G26850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLY2" /translation="MVTMKWLEDNSFPVKNGKCEQLIHSHSFLQDTNFPMYCFGSQSI EEDNSFEGLSCIAEEEQSILDAVLLSQWEDRMRKGCFRYDVTASEIKAIAGKMKFLSQ LNEGQITGHLSKPEGNTLREWDPFAFDCMRQPEELLFCVSSSKKAKSELIPSASVPDS AILVIINVTPVEYGHVFLVPCTTNRLYQFLDPRSVELVTRVAAEINNCSFRVFYDCCR PNRSNVYFQACYFPDPLPVEFRPVDTVYSGGRRGIHICSVIDYPIKTLSFQTTHNLKI MAAAICEICSHLEEKNVQYNLMITDSGKKILLFLQRSFAASNAISAWECGGYFLFRCR YEFDQVTEDAMLKRLSSFSLDDDNFEAVKQLCCSIASKFDS" gene 433210..434784 /locus_tag="TCM_026944" /note="dbxref CacaoGD:Thecc1EG026944" mRNA join(433210..433235,433309..433422) /locus_tag="TCM_026944" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc249t2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc207t5" CDS join(433222..433235,433309..433393) /locus_tag="TCM_026944" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY25554.1" /translation="MYTFSLASKFVHYSQQCLYNQHFCGRAVLRKN" gene complement(435938..439911) /locus_tag="TCM_026945" /note="dbxref CacaoGD:Thecc1EG026945" mRNA complement(join(435938..439128,439240..439366, 439596..439911)) /locus_tag="TCM_026945" /product="Hercules receptor kinase 2 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene28878" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042894t1" /inference="similar to AA sequence:ricco:30075.m001175" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc524t2" mRNA complement(join(436024..439366,439446..439480)) /locus_tag="TCM_026945" /product="Hercules receptor kinase 2 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene28878" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042894t1" /inference="similar to AA sequence:ricco:30075.m001175" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc472t1; alternateUTRof:Thecc1EG026945t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc524t2" CDS complement(436393..438933) /locus_tag="TCM_026945" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30075.m001175; paralog of Thecc1EG042894t1" /codon_start=1 /product="Hercules receptor kinase 2 isoform 1" /protein_id="EOY25555.1" /db_xref="TAIR:AT1G30570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SA72" /translation="MGKVQGSKVLSLLLVIVFSASFRKGEAQSKSFLINCGTNSSVNV DGRKWVGDLSPDNNLTLSSPGVVSTTSTLSGDSIFAPLYKSARLFSDELNYTFNGIQG NYFLRLHFCPFSFEDHNVNESSFDVVANGLKLLEQFNVAGEIAHKNLYLQGMGTNFSS FSLVKEYILPINLDMLVIEFTPTKGSFGFINAMEMVPVADKLFADSVSKVGGNDANLN LSGRGIETMYRLNVGGPEINASQDSDYWRTWDVDSGYMITANAGFEIHNSSNITYASA NDSSVAPLLVYETARSMSNTDMLEKRINMSWRFEVDPDFDYLVRLHFCELVYDKPSQR IFRIYINNRTAANNFDLFVKAGGINKAYHQDYFDAVSSKINILWIQLGPDTAAGASGT DALLNGLEIFKLSRNGNLAHVQIYDSTGNSTHTSKSWILWVGIGAGVASVAILAAAGT FLFCFCKKQRRESGDMKNNTPGWRPLFLHGSILNSTANAKGSSRLRNINGSIASTGVG KQFTLAEIRTATNNFDESLVIGVGGFGKVFKGEIEDGTLAAIKRANPQSEQGLTEFHT EIEMLSKLRHRHLVSLIGFCDEQNEMILVYEYMANGTLRSHLFGNDVPPLTWKQRLEA CIGAARGLHYLHTGAERGIIHRDVKTTNILLDQNFVAKMSDFGLSRTGPSLEHTHVST AVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVVCARAVINPSLPKDQINLAEWAM RWQRQRSLETIIDPHLRGKYSPESMEKFGEIAEKCLADEGKNRPTMGEVLWHLEYVLQ LHQAWIRANTMDNSFSGSQALGDLEDREAENRQYDGNSGAGASKPEAI" CDS complement(436393..438933) /locus_tag="TCM_026945" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30075.m001175; paralog of Thecc1EG042894t1" /codon_start=1 /product="Hercules receptor kinase 2 isoform 1" /protein_id="EOY25556.1" /db_xref="TAIR:AT1G30570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SA72" /translation="MGKVQGSKVLSLLLVIVFSASFRKGEAQSKSFLINCGTNSSVNV DGRKWVGDLSPDNNLTLSSPGVVSTTSTLSGDSIFAPLYKSARLFSDELNYTFNGIQG NYFLRLHFCPFSFEDHNVNESSFDVVANGLKLLEQFNVAGEIAHKNLYLQGMGTNFSS FSLVKEYILPINLDMLVIEFTPTKGSFGFINAMEMVPVADKLFADSVSKVGGNDANLN LSGRGIETMYRLNVGGPEINASQDSDYWRTWDVDSGYMITANAGFEIHNSSNITYASA NDSSVAPLLVYETARSMSNTDMLEKRINMSWRFEVDPDFDYLVRLHFCELVYDKPSQR IFRIYINNRTAANNFDLFVKAGGINKAYHQDYFDAVSSKINILWIQLGPDTAAGASGT DALLNGLEIFKLSRNGNLAHVQIYDSTGNSTHTSKSWILWVGIGAGVASVAILAAAGT FLFCFCKKQRRESGDMKNNTPGWRPLFLHGSILNSTANAKGSSRLRNINGSIASTGVG KQFTLAEIRTATNNFDESLVIGVGGFGKVFKGEIEDGTLAAIKRANPQSEQGLTEFHT EIEMLSKLRHRHLVSLIGFCDEQNEMILVYEYMANGTLRSHLFGNDVPPLTWKQRLEA CIGAARGLHYLHTGAERGIIHRDVKTTNILLDQNFVAKMSDFGLSRTGPSLEHTHVST AVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVVCARAVINPSLPKDQINLAEWAM RWQRQRSLETIIDPHLRGKYSPESMEKFGEIAEKCLADEGKNRPTMGEVLWHLEYVLQ LHQAWIRANTMDNSFSGSQALGDLEDREAENRQYDGNSGAGASKPEAI" mobile_element 440697..440805 /note="source:scaffold_5_CACTA_0580 6634 6751" /mobile_element_type="transposon:TIR/CACTA" gene 441074..445195 /locus_tag="TCM_026946" /note="dbxref CacaoGD:Thecc1EG026946" mRNA join(441074..441398,441607..441651,441926..442015, 442723..442823,442912..442983,443291..443362, 443668..443748,443856..443891,444002..444063, 444755..445066) /locus_tag="TCM_026946" /product="SNF7 family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s43310.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003980t1" /inference="similar to AA sequence:TAIR:AT5G44560.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc412t5_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g128t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc418t5" mRNA join(441206..441398,441607..441651,441926..442011, 442719..442823,442912..442983,443291..443362, 443668..443748,443856..443891,444002..444063, 444755..445195) /locus_tag="TCM_026946" /product="SNF7 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s43310.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003980t1" /inference="similar to AA sequence:TAIR:AT5G44560.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g128t2" CDS join(441365..441398,441607..441651,441926..442015, 442723..442823,442912..442983,443291..443362, 443668..443748,443856..443891,444002..444063, 444755..444815) /locus_tag="TCM_026946" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG003980t1" /codon_start=1 /product="SNF7 family protein isoform 3" /protein_id="EOY25559.1" /db_xref="TAIR:AT5G44560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WTY4" /translation="MNIFKKKTSPKDALRTSKREMTVATRGIEREIASLQLEEKKLVA EIKKTAKTGNEATTRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGM KGATKAMVAMNKQMAPEKQAKVIKEFQKQSAQMDMTIEMMSEAIDETLDKDEAEEETE ELTNQVLDEIGVDIASQLSSAPKGRIASRNAAPEVNARSESTDVDELEKRLASLRRI" CDS join(441365..441398,441607..441651,441926..442011, 442719..442823,442912..442983,443291..443362, 443668..443748,443856..443891,444002..444063, 444755..444815) /locus_tag="TCM_026946" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG003980t1" /codon_start=1 /product="SNF7 family protein isoform 1" /protein_id="EOY25557.1" /db_xref="TAIR:AT5G44560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WTY4" /translation="MNIFKKKTSPKDALRTSKREMTVATRGIEREIASLQLEEKKLVA EIKKTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGM KGATKAMVAMNKQMAPEKQAKVIKEFQKQSAQMDMTIEMMSEAIDETLDKDEAEEETE ELTNQVLDEIGVDIASQLSSAPKGRIASRNAAPEVNARSESTDVDELEKRLASLRRI" mRNA join(441983..442011,442426..442482,442719..442823, 442912..442983,443291..443362,443668..443748, 443856..443891,444002..444063,444755..445045) /locus_tag="TCM_026946" /product="Vacuolar protein sorting-associated protein 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s43310.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003980t1" /inference="similar to AA sequence:TAIR:AT5G44560.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc418t5; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc418t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g128t2" CDS join(442438..442482,442719..442823,442912..442983, 443291..443362,443668..443748,443856..443891, 444002..444063,444755..444815) /locus_tag="TCM_026946" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG003980t1" /codon_start=1 /product="Vacuolar protein sorting-associated protein 2 isoform 2" /protein_id="EOY25558.1" /db_xref="TAIR:AT5G44560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WTY4" /translation="MHTCSLLEAELYILLAATRILARQLVRLRQQITNLQGSRAQIRG VATHTQALYASTSISTGMKGATKAMVAMNKQMAPEKQAKVIKEFQKQSAQMDMTIEMM SEAIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSAPKGRIASRNAAPEVNARSE STDVDELEKRLASLRRI" gene 446207..452751 /locus_tag="TCM_026947" /note="dbxref CacaoGD:Thecc1EG026947" mRNA join(446207..446360,446449..446520,447280..447393, 450206..450316,451310..451422,452322..452402, 452512..452565,452689..452751) /locus_tag="TCM_026947" /product="LSD1 zinc finger family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15810.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015740t2" /inference="similar to AA sequence:Phytozome:GSVIVT01037958001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15400t2" mRNA join(446218..446360,446449..446520,447280..447393, 447787..447844,450206..450316,451310..451422, 452322..>452402) /locus_tag="TCM_026947" /product="LSD1 zinc finger family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene20122" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15810.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015740t2" /inference="similar to AA sequence:Phytozome:GSVIVT01037958001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc859t3_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc859t3_C1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15400t2" mRNA join(446248..446360,446449..446520,447280..447393, 450206..450276,451321..451422,452322..452402, 452512..452565,452689..>452717) /locus_tag="TCM_026947" /product="LSD1 zinc finger family protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene20122" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15810.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015740t2" /inference="similar to AA sequence:Phytozome:GSVIVT01037958001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc872t6_C2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15400t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc859t3_C1" CDS join(447282..447393,450206..450316,451310..451422, 452322..452402,452512..452565,452689..452730) /locus_tag="TCM_026947" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015740t2" /codon_start=1 /product="LSD1 zinc finger family protein isoform 1" /protein_id="EOY25560.1" /db_xref="Phytozome:GSVIVT01037958001" /db_xref="TAIR:AT4G20380.7" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0U8" /translation="MQSQLVCSGCRSILLYPRGAANVCCALCNTVTQVPPPGNDMAQL ICGGCRTLLMYTRGATSVRCSCCHTINFAQASNQIAHINCGHCRTTLMYPYGAPSVKC AVCQYVTNVGMGNVRVPLPVNRPNGVAATGTTPSTSTSQTVVVENPMSVDESGKLVTN VVVGVTTDKK" CDS join(447282..447393,450206..450276,451321..451422, 452322..452402,452512..452565,452689..>452715) /locus_tag="TCM_026947" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG015740t2" /codon_start=1 /product="LSD1 zinc finger family protein isoform 3" /protein_id="EOY25562.1" /db_xref="Phytozome:GSVIVT01037958001" /db_xref="TAIR:AT4G20380.7" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0U8" /translation="MQSQLVCSGCRSILLYPRGAANVCCALCNTVTQVPPPGNDMAQL ICGGCRTLLMYTRGATSIAHINCGHCRTTLMYPYGAPSVKCAVCQYVTNVGMGNVRVP LPVNRPNGVAATGTTPSTSTSQTVVVENPMSVDESGKLVTNVVVGVT" CDS join(447346..447393,447787..447844,450206..450316, 451310..451422,452322..>452402) /locus_tag="TCM_026947" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015740t2" /codon_start=1 /product="LSD1 zinc finger family protein isoform 2" /protein_id="EOY25561.1" /db_xref="Phytozome:GSVIVT01037958001" /db_xref="TAIR:AT4G20380.7" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0U8" /translation="MFVARYAIQLPKSLPLSNADGDLGYPDHVSSNQPKRNDMAQLIC GGCRTLLMYTRGATSVRCSCCHTINFAQASNQIAHINCGHCRTTLMYPYGAPSVKCAV CQYVTNVGMGNVRVPLPVNRPNGVAATGTTPSTST" mobile_element complement(454038..454247) /note="source:scaffold_2_CACTA_0245 1465 1636" /mobile_element_type="transposon:TIR/CACTA" mobile_element 454344..454596 /note="source:CACAO_PIF_E144_scaffold_10 2129 2390" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 455016..456095 /locus_tag="TCM_026949" /note="dbxref CacaoGD:Thecc1EG026949" mRNA join(455016..455302,455372..455495,455604..456095) /locus_tag="TCM_026949" /product="CASP-like protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s43290.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s43290.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12653t00001" CDS join(455061..455302,455372..455495,455604..455825) /locus_tag="TCM_026949" /codon_start=1 /product="CASP-like protein, putative" /protein_id="EOY25563.1" /db_xref="Phytozome:POPTR_0001s43290.1" /db_xref="TAIR:AT5G44550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI10" /translation="MAPQSGTEKPMFGYGSISCKAKSRWSWTMVGLRLLAFLATAAAA VVMLLNKQTKTFVIATVGTTPVNLTLTAKFQHTPAFVFFVVANGLASIHNLLMVMVDL FGSKVDYKGLRFAMIAILDMLNVALVSGGANAAAFMAELGKNGNSHARWDKICDRFGR FCDRGGGALIASFVALALMLIISVISIVKVLKSNK" mobile_element 456186..456367 /note="source:scaffold_1_CACTA_0016 1100 1285" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(457340..457482) /note="source:scaffold_5_CACTA_0580 5395 5528" /mobile_element_type="transposon:TIR/CACTA" gene 457569..466706 /locus_tag="TCM_026950" /note="dbxref CacaoGD:Thecc1EG026950" mRNA join(457569..458064,458143..458440,459212..459283, 459784..459861,459964..460470,460567..460791, 461947..462108,462824..463192,463299..464403, 464514..464617,464885..465082,465872..466706) /locus_tag="TCM_026950" /product="Transcription factor jumonji family protein / zinc finger family protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G30810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026412t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s43140.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc453t1" CDS join(458399..458440,459212..459283,459784..459861, 459964..460470,460567..460791,461947..462108, 462824..463192,463299..464403,464514..464617, 464885..465082,465872..466219) /locus_tag="TCM_026950" /note="paralog of Thecc1EG026412t1" /codon_start=1 /product="Transcription factor jumonji family protein / zinc finger family protein" /protein_id="EOY25564.1" /db_xref="Phytozome:POPTR_0001s43140.1" /db_xref="TAIR:AT4G20400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I3H0" /translation="MEQLKIGAGSHMKEDHSSQLFMKRDNNVESLGSPRSRKVSARWV PDEACRPIIDDAPVFYPTVEEFEDTLAYIEKIRAEAESYGICRIVPPPSWTPPCPLKE KDIWGRAKFSTRIQQVDLLQNREPMRKKSRSRKRKRRRHSRMGATRRHANSSSESNVT YEADEKFGFHSGSDFTLEEFQRYADEFKEMYFRRDCDKDSKPCVDECRKWEPSCEDIE GEYWRIVEQPTDEVEVYYGADLETGTFGSGFPKASSMLTGNDAYIYAMSGWNLNNFPR LQGSVLSFEGCDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKIWYGVPG SHASSLEATMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYRAVQRYGEFVLTF PRAYHSGFNCGFNCAEAVNVAPVDWLEHGQHAVELYSEQHRKTSLSHDKLLLGSARQA IKALRELFVLGRETPGNLRWNRVCGKDGMLTKAVRMRVQMEEKRVKCLPSHLPLLKME KDFDLENERECFSCFYDLHLSACSCKCSPERFACLKHVKNFCSCQDEDRFVLLRYTID ELQMLVKALEGGLDAVKVWAYEDLGLVSVNDCDANLCKLVQDSEGLNTERSQLRENGS CSPRMEKMVAINTPCSDGHVSSEVLPSECQHGTKLNGSHVALDSHNNVLNVGVLVMEN RVNLEQDACIDLNLNIISDHTASKSMYACDSPNKNSVSDVETLLPFFKQEKICGFDEG REPDLKRIKRDCSLSVSRESPNKYQCSTSRVCQDSDGFDGKKLFGVELLFPHSQVGQS NTLLKMENFNSSDVNASMTDHDGSITKLNSSVEPLNFGSVIFGKRWCSKQAIFPKGFR SRVKYFSVLDPTKISSYISEVLDAGLLGPLFKVTLEGCPTVTFSNVSVGKCWEMVLEQ LNQEILRRSNLGERQLLPLQSLQSINGLEMFGFLSPSVIQAIEALDPNHQCLEYWNHK TTSDSSEVKQYAFRLSCSVGETKPKVFGFDLTKHNQDELVSQHSVDEEVQVVLRGLFK KASPEELNIMRRILCSEAQSAEWRVAYETLTEEIQKTCR" gene complement(466710..467814) /locus_tag="TCM_026951" /note="dbxref CacaoGD:Thecc1EG026951" mRNA complement(466710..467814) /locus_tag="TCM_026951" /product="Fasciclin-like arabinogalactan family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29776.m000472" /inference="similar to AA sequence:ricco:29776.m000472" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc2867t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1455t1" CDS complement(466967..467722) /locus_tag="TCM_026951" /note="dbxref ricco:29776.m000472" /codon_start=1 /product="Fasciclin-like arabinogalactan family protein, putative" /protein_id="EOY25565.1" /db_xref="TAIR:AT1G30800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SV65" /translation="MMTEYSSLSFFLFLLLILCPVSPFAAKHQHQHRPLPPPSPPPPP PPPLHQHQLNNIIDALIGAGDFNSWANMLSASDVFMLPLSATLFVPSDDYLFPFPGQV PTSSTATFDPLILPYHIVPQRLTFSQLTLFKPFSRLPTLLPSKSILITNTSLSNFTLD ASQISYPDLYLTSAVAVHGIAALLNYTAYGGDGGLILAPPLPPPPPIFQPLWDGDMKG SDAGCLYGEFAFVLLLIPWVVWTIKIYGNPLGL" gene 468363..471128 /locus_tag="TCM_026952" /note="dbxref CacaoGD:Thecc1EG026952" mRNA join(468363..468383,468521..468606,468726..468849, 470853..471128) /locus_tag="TCM_026952" /product="Splicing factor 3B subunit 5/RDS3 complex subunit 10" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s16780.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s16780.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15410t1" CDS join(468378..468383,468521..468606,468726..468849, 470853..470900) /locus_tag="TCM_026952" /codon_start=1 /product="Splicing factor 3B subunit 5/RDS3 complex subunit 10" /protein_id="EOY25566.1" /db_xref="Phytozome:POPTR_0008s16780.1" /db_xref="TAIR:AT3G23325.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A3BTL4" /translation="MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYAS YIGHYPMLAFFAVAENESIGRERYNFMQKMLLPCGLPPEREDD" gene complement(471320..522269) /locus_tag="TCM_026953" /note="dbxref CacaoGD:Thecc1EG026953" mRNA complement(join(471320..471902,472301..472430, 472701..472780,473102..473180,473716..473853, 474367..474525,474790..474874,475057..475124, 475338..475504)) /locus_tag="TCM_026953" /product="Gamma-soluble NSF attachment protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29776.m000473" /inference="similar to AA sequence:ricco:29776.m000473" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15407t1" mRNA complement(join(471341..471903,472301..472430, 472701..472780,473102..473180,473716..473853, 474367..474525,474790..474874,475057..475124, 484523..>484548)) /locus_tag="TCM_026953" /product="Gamma-soluble NSF attachment protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29776.m000473" /inference="similar to AA sequence:Phytozome:Glyma15g21990.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g434t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15407t1" CDS complement(join(471801..471902,472301..472430, 472701..472780,473102..473180,473716..473853, 474367..474525,474790..474874,475057..475124, 475338..475384)) /locus_tag="TCM_026953" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29776.m000473" /codon_start=1 /product="Gamma-soluble NSF attachment protein isoform 1" /protein_id="EOY25567.1" /db_xref="TAIR:AT4G20410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6TG94" /translation="MSTSDPSKLISKADKLTKLSLTRWSADWKSATVLYEQAANGFRV ARNYEKAKLAFEKASQGQEMLSSPWDAAKHMESAAALAKELRNWAEVIDFYRKASELY MQCDRPQPASDALAKGARALEDALPDDAIQLYTDACVILEDDGKEQMAFDLYRAATSV YVKLEKYTDAAAFLLRLGLAADKCNARNSQCKAYLSAIIVYLYAHDLKQAEKCYNDCS QIDAFLGSDQNRCASKLLSAYTEGDVEEIKRVAQSSAISNLDNVIIKLARKLPTGDVS AFKTDAANEEEPLDENDLT" CDS complement(join(471868..471903,472301..472430, 472701..472780,473102..473180,473716..473853, 474367..474525,474790..474874,475057..475124, 484523..>484548)) /locus_tag="TCM_026953" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Gamma-soluble NSF attachment protein isoform 3" /protein_id="EOY25569.1" /db_xref="Phytozome:Glyma15g21990.1" /db_xref="TAIR:AT4G20410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6TG94" /translation="KLISKADKLTKLSLTRWSADWKSATVLYEQAANGFRVARNYEKA KLAFEKASQGQEMLSSPWDAAKHMESAAALAKELRNWAEVIDFYRKASELYMQCDRPQ PASDALAKGARALEDALPDDAIQLYTDACVILEDDGKEQMAFDLYRAATSVYVKLEKY TDAAAFLLRLGLAADKCNARNSQCKAYLSAIIVYLYAHDLKQAEKCYNDCSQIDAFLG SDQNRCASKLLSAYTEGDVEEIKRVAQSSAISNLDNVDHKACKKVAYW" mRNA complement(join(<471874..471902,472301..472430, 472701..472780,473102..473180,473716..473853, 474367..474525,474790..474874,475057..475124, 475338..475567,482804..482972,518972..518991, 522176..522269)) /locus_tag="TCM_026953" /product="Gamma-soluble NSF attachment protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29776.m000473" /inference="similar to AA sequence:Phytozome:Glyma15g21990.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc386t26; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15407t1" mRNA complement(join(<471875..471902,472363..472430, 472701..472780,473102..473180,473716..473853, 474367..474525,474790..474874,475057..475124, 475338..475589)) /locus_tag="TCM_026953" /product="Gamma-soluble NSF attachment protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29776.m000473" /inference="similar to AA sequence:Phytozome:Glyma15g21990.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc381t3_C2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15407t1" CDS complement(join(<471876..471902,472301..472430, 472701..472780,473102..473180,473716..473853, 474367..474525,474790..474874,475057..475124, 475338..475384)) /locus_tag="TCM_026953" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Gamma-soluble NSF attachment protein isoform 2" /protein_id="EOY25568.1" /db_xref="Phytozome:Glyma15g21990.1" /db_xref="TAIR:AT4G20410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6TG94" /translation="MSTSDPSKLISKADKLTKLSLTRWSADWKSATVLYEQAANGFRV ARNYEKAKLAFEKASQGQEMLSSPWDAAKHMESAAALAKELRNWAEVIDFYRKASELY MQCDRPQPASDALAKGARALEDALPDDAIQLYTDACVILEDDGKEQMAFDLYRAATSV YVKLEKYTDAAAFLLRLGLAADKCNARNSQCKAYLSAIIVYLYAHDLKQAEKCYNDCS QIDAFLGSDQNRCASKLLSAYTEGDVEEIKRVAQSSAISNLDNVIIKLARKLP" CDS complement(join(<471877..471902,472363..472430, 472701..472780,473102..473180,473716..473853, 474367..474525,474790..474874,475057..475124, 475338..475384)) /locus_tag="TCM_026953" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Gamma-soluble NSF attachment protein isoform 4" /protein_id="EOY25570.1" /db_xref="Phytozome:Glyma15g21990.1" /db_xref="TAIR:AT4G20410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6TG94" /translation="MSTSDPSKLISKADKLTKLSLTRWSADWKSATVLYEQAANGFRV ARNYEKAKLAFEKASQGQEMLSSPWDAAKHMESAAALAKELRNWAEVIDFYRKASELY MQCDRPQPASDALAKGARALEDALPDDAIQLYTDACVILEDDGKEQMAFDLYRAATSV YVKLEKYTDAAAFLLRLGLAADKCNARNSQCKAYLSAIIVYLYAHDLKQAEKCYNDCS QIDAFLGSDQNRCASKLLSAYTEDHKACKKVA" gene 475957..502881 /locus_tag="TCM_026954" /note="dbxref CacaoGD:Thecc1EG026954" mRNA join(475957..476556,476733..479759,491937..492069, 498528..498614,502601..502881) /locus_tag="TCM_026954" /product="Cc-nbs-lrr resistance protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT5G47260.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026957t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s32030.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc386t25" CDS 476972..479743 /locus_tag="TCM_026954" /note="paralog of Thecc1EG026957t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative" /protein_id="EOY25571.1" /db_xref="Phytozome:POPTR_0001s32030.1" /db_xref="TAIR:AT4G10780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGA8" /translation="MGNLCSVSCSMKDTVSRFWDCVAGQVSYTIKLEDNLKALSVEGA KLKARRDDVNRRVDLAEQQRMKPLNEVQLWLSSVQTAEAEAEVLIKDCPQQIQQLCFA GCFSKNCKSSYNFPEQVSSQLAEIVYLKNAGVFESVAENELAVQVDVRPAGSTVGLER TFDEVWRLLEQNNVGSIGLHGLGGVGKTTLLTQINNKLSNELIGYDVVIWLVVSKDHN IETVQEKIGEKVGLSRGGTWKNKSFDEKAVEIWRVLSGKKFVLLLDDVWERVDLIKVG IPESDQKNGSKLIFTTRSLDICGQMGAHKVIQVECLSKDEAWKLFEEKVGEETIDSHP DIRELAKQVADECEGLPLALITIGRAMAYSTMPKHWEYAIKVLKEFSHKLVSMDEEVY SRLKFSYDSLPKDTMRSCLLYCSLYPEDFEIPIDELKDYWFCEGFLDEFDNIIDARMQ GEDIINSLVNACLLERCKGLAKCVKMHDVIRDMTLWIACECEAPENRFFIKTGIRSIK ALDVENWKGVRMSLMYSQIKKLRGTPTCPNLQTLFLNGNRLEVISDGFFQFMRNLRVL NLSSNQYLYELPQGISELVSLECLDLRWTCIIELPIQLNKLSKLKYLDLMRTYRLIKI PRELICKFLKLQIFKIFSDSICKTDINSLIEELKCLQHLNVLWIEIRTDFALESLLSC HHLRGCTEGLCLGGWTGTKVLSVLFLENMERLENLEITECGSIEEMVTRNIEKELGER RMIQTSSLSPTNSNTITPRFHALSKISIFNCPKLRNLTWLIFAPNLTQLKVGLCLRME EIISEVSEVANVVGISNPSPFAKLERLHLQTLFDLKSIYWDALPFPCLTDIIVLNCPE LKKLPLNCDSAKGNQISIVGSEDWWKEVQWKDEVTRSTFLPSFKLPSRGKELDWKDEA NLNAFNILF" mobile_element 479837..481270 /note="source:INTACT26_F13_scaffold_9-int 2414 3849" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(482495..484618) /locus_tag="TCM_026955" /note="dbxref CacaoGD:Thecc1EG026955" mRNA complement(join(482495..482972,484523..484618)) /locus_tag="TCM_026955" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13917t00001" CDS complement(482647..482850) /locus_tag="TCM_026955" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25572.1" /translation="MTTHKIVVVCVELPVKLENLFIGKYLVCICKQTLYEQALLIVLL SSGTQMLQLSFLRLGLAADKCNA" mobile_element complement(484656..486471) /note="source:scaffold_9_CACTA_0932 828 2623" /mobile_element_type="transposon:TIR/CACTA" mobile_element 486850..489554 /note="source:CACAO_M_E44272_F73_scaffold_6 1 2705" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(495285..502854) /locus_tag="TCM_026956" /note="dbxref CacaoGD:Thecc1EG026956" mRNA complement(join(495285..496426,498133..498223, 500008..500181,501262..501415,502220..502854)) /locus_tag="TCM_026956" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s26780.1" /note="quality class is medium-expresste, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc6057t1" mobile_element 495502..498292 /note="source:CACAO_M_E44273_F87_scaffold_6 1 2791" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(496139..496426,498133..498223, 500008..500181,501262..501415,502220..502370)) /locus_tag="TCM_026956" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25573.1" /translation="MEGHTRNKCPQLELRLRSLDSSSCLLDDNDVDVCERNKEVWPSQ LGTLFGVFAGSYFYVAGALVALLKPGRMSMFGTLLVICGLVKEGILGKPGKSDPTKAV SISAATPHSQSCSAVPLLPNRTSSVAVPYSQRYSVVQHHINKAVASALQRHTPSAAAL KFEKSLKDDIAPNGTIKSIKPRTSSNRNFKWWGFPWTAYERGTITQLYIYLRGKMLDK VYHEVRFECTSRSDHHVRVRLGQHQGTVVCVRCENMFMGIRYLTALAVSVGYLDEGTD ENDFGRGQV" gene 499929..514408 /locus_tag="TCM_026957" /note="dbxref CacaoGD:Thecc1EG026957" mRNA join(499929..500089,512054..514174,514260..514408) /locus_tag="TCM_026957" /product="Cc-nbs-lrr resistance protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G12210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026954t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s32030.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage" gene complement(502901..509104) /locus_tag="TCM_026958" /note="dbxref CacaoGD:Thecc1EG026958" mRNA complement(join(502901..504519,504661..504933, 505169..505734,508553..509104)) /locus_tag="TCM_026958" /product="FAR1-related sequence 5-like protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g028930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014540t1" /inference="similar to AA sequence:Phytozome:Sb02g028930.1" /note="quality class is medium, express is medium, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1158t2" CDS complement(join(503871..504519,504661..504933, 505169..505185)) /locus_tag="TCM_026958" /note="paralog of Thecc1EG014540t1" /codon_start=1 /product="FAR1-related sequence 5-like protein" /protein_id="EOY25575.1" /db_xref="Phytozome:Sb02g028930.1" /db_xref="TAIR:AT4G38180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AWG1" /translation="MLTSCRLMESQENNLSDAKYLHELSKDEILGLEFDDLEDVYEFY KAYACAMGLGVHKGSCRRNKNGIEVMKHFACSKEGHRAEKWEKLENWVREPKRHIKVV DVYEAKAMKVAGIKTCQVMNVFAAQVGGIQNVGFTRKDFYNRMAAKRHAKVNDGDVQA TLLYFGVKKEIDNGFYMKHTTYDDNKLKNLFWADSISRLDYACFGDVLAYDTTYKKNT FNLPLLVFIGVNHHHMTTIFALALLTNEDAESYIWALTTFLECMMNKKPISVVIDGDR AMRKALEMVFPGVRHRLCSWHLARNAQANVPLPGFV" mobile_element complement(505559..508391) /note="source:scaffold_9_CACTA_0932 186 2514" /mobile_element_type="transposon:TIR/CACTA" gene 511874..2454558 /locus_tag="TCM_026959" /note="dbxref CacaoGD:Thecc1EG026959" mRNA join(511874..512106,2328512..2328658,2345656..2345709, 2386571..2386916,2402752..2403380,2452136..2453655, 2453862..2454558) /locus_tag="TCM_026959" /product="Disease resistance protein family" /inference="alignment:exonerate- protein:2:ricco:29841.m002750" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026954t1" /inference="similar to AA sequence:Phytozome:GSVIVT01038404001" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00054t00005" CDS join(512065..514174,514260..514264) /locus_tag="TCM_026957" /note="paralog of Thecc1EG026954t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative" /protein_id="EOY25574.1" /db_xref="Phytozome:POPTR_0001s32030.1" /db_xref="TAIR:AT4G10780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGA8" /translation="MGNLCSVSISMEGSVSRCWDCVVGQASYTCKLEDNLKALRKELE ELQARRDDVNRRVDLAEQQRMKRLNEVRLWLSRVQTAEAEAEVLIKDGPQQIQKLCFA GCFSKNCKSSYNFGKQVTRKLTEIVDLKNAGVFERVAENELAAQVDVRPVGSTVGLER TFDEVWRLLEQNNVGSIGLHGLGGVGKTTLLTQINNKLSNDLIGYDVVIWVVVSKDHN IEKVQEKIGEKVGLSHNETWKNKSFDEKAIEIWRVLSKKKFFLLLDDVWERVDLIKVG IPEPDQENGSKLIFTTRFLAVCGQMGAHKVIKVECLSKDDAWKLFKDKVGEETLDSHL VIRGLAKQVVDECEGLPLALITIGRAMAYKMTPKHWEYAIKVLQEFPHKLASMDKKVY SLLKFSYDNLPKNTMRSCLLYCSLYPEDFEIPIDELKDYWFCEGFLDEFDNIIDARMQ GEDIINSLLNACLLERCKDSAECVKMHDVIRDMTLWIACECEALEKRFFVKIGLRAIK AFDVENWEGVRMSLMYCQIKDLRGTPTCPNLQTLFLNSCRLKVISDGFFQFMRNLRVL NLSSNYLLKELPQGISELISLECLDLHETYISELPIQLNKLSKLKYLDLRRTSHLHKI PQQLICKFSMLQIFKMSPINFIDVGIDNALSSSGDSLIEELKCLQHLKVLWIEIRTDF ALKSLLSCHNLRGCTEGLYLRA" gene 520242..520860 /locus_tag="TCM_026962" /note="dbxref CacaoGD:Thecc1EG026962" mRNA 520242..520860 /locus_tag="TCM_026962" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10955t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc764t8" CDS 520362..520706 /locus_tag="TCM_026962" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25577.1" /translation="MFINHIKLCVPEEEQEIPLPKAKLAHLLKGMALIHQVVGWWGGS SSKLHPAMFRKLIQDDSTRRKRAKASTLGLKFCFLDLLQQTISMSVGSITYQDKFNVI NRNFHYEIESYS" gene complement(520579..523104) /locus_tag="TCM_026963" /note="dbxref CacaoGD:Thecc1EG026963" mRNA complement(join(520579..520604,522069..522147, 522347..522482,522907..523104)) /locus_tag="TCM_026963" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc379t3" CDS complement(join(522481..522482,522907..523027)) /locus_tag="TCM_026963" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25578.1" /translation="MAHCHPAVGLLQPMPEGMGRRRGSGASGPRPTSSSPMPIS" mobile_element complement(525806..526212) /note="source:CACAO_on_SSS_E94_scaffold_6 1 467" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(526126..526222) /note="source:scaffold_8_CACTA_0858 14202 14300" /mobile_element_type="transposon:TIR/CACTA" gene 527106..527840 /locus_tag="TCM_026965" /note="dbxref CacaoGD:Thecc1EG026965" mRNA 527106..527840 /locus_tag="TCM_026965" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS 527217..527663 /locus_tag="TCM_026965" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25579.1" /translation="MVMACKTCSMLLLFLSLVLVINLVPQSDAARRLADEMIPKDQVA GLGKKEEAKMKSFGEMKNSPSFPFPLPFSSPDMPFAPPLPQVPITQLPPFPFPPPFGV PPFPFPPPFGVPPFPFPPPFGVPPFPGFPFPPVTFPPIPFFSPPPP" gene complement(528055..528641) /locus_tag="TCM_026966" /note="dbxref CacaoGD:Thecc1EG026966" mRNA complement(528055..528641) /locus_tag="TCM_026966" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage" CDS complement(528217..528618) /locus_tag="TCM_026966" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25580.1" /translation="MAFSLNLLHFHIIFSLFLLCSASRPLPKHEKPLTVQFGADSVPS ELSSKPNFATPGDDDSVLPTFPFFQDSSALPPPASLDTNYAPTFPFPSLPSLPQLPPF PFILTLPLSSPVTPSPPSTLLAPPSEVPDNP" gene 529471..538704 /locus_tag="TCM_026967" /note="dbxref CacaoGD:Thecc1EG026967" mRNA join(529471..529608,531221..531294,531385..531482, 531595..531691,532217..532282,533528..533587, 533698..533772,533923..534007,535198..535256, 535695..535739,536608..536706,536941..536988, 537143..537190,537576..537666,538055..538704) /locus_tag="TCM_026967" /product="Aldolase-type TIM barrel family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s22100.1" /inference="similar to AA sequence:frave:gene18481" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:PASA:2:TSA:puevd3b026078t1a2; alternateUTRof:Thecc1EG026967t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc670t5" mRNA join(529554..529608,531221..531294,531385..531482, 531595..531691,532217..532282,533528..533587, 533698..533772,533923..534007,535198..535256, 535695..535739,536608..536706,536941..536988, 537143..537190,537576..537658,538055..538390) /locus_tag="TCM_026967" /product="Aldolase-type TIM barrel family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s22100.1" /inference="similar to AA sequence:frave:gene18481" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaL_g04730t00001; alternateUTRof:Thecc1EG026967t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc670t5; inference alignment:Newbler:10:TSA:cgbaP1_g00309t00001" mRNA join(529580..529608,531094..531131,531221..531294, 531385..531482,531595..531691,532217..532282, 533528..533587,533698..533772,533923..534007, 535198..535256,535695..535739,536608..536706, 536941..536988,537143..537190,537576..537666, 538055..538166,538264..538355) /locus_tag="TCM_026967" /product="Aldolase-type TIM barrel family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s22100.1" /inference="similar to AA sequence:frave:gene18481" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc670t5; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc670t5" mRNA join(529580..529608,531094..531131,531221..531294, 531385..531482,531595..531691,532217..532282, 533528..533587,533698..533772,533923..534007, 535198..535256,535695..535739,536608..536706, 536941..536988,537143..537190,537576..537658, 538055..538355) /locus_tag="TCM_026967" /product="Aldolase-type TIM barrel family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s22100.1" /inference="similar to AA sequence:frave:gene18481" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc670t7; alternateUTRof:Thecc1EG026967t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc670t5; inference alignment:Newbler:10:TSA:cgbaP1_g00309t00001" mRNA join(529580..529608,531094..531131,531221..531294, 531385..531482,531595..531691,532217..532282, 533528..533587,533698..533772,533923..534007, 535198..535256,535695..535739,536608..536706, 536941..536988,537143..537190,537576..537654, 538055..538355) /locus_tag="TCM_026967" /product="Aldolase-type TIM barrel family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s22100.1" /inference="similar to AA sequence:frave:gene18481" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc670t1; alternateUTRof:Thecc1EG026967t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc670t5; inference alignment:Newbler:10:TSA:cgbaP1_g00309t00001" mRNA join(529584..529608,531094..531131,531221..531294, 531385..531482,531595..531691,532217..532282, 533528..533587,533698..533772,533923..534007, 535198..535256,535695..535739,536608..536706, 536941..536988,537143..537190,537576..537657, 538080..538166,538264..538447) /locus_tag="TCM_026967" /product="Aldolase-type TIM barrel family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s22100.1" /inference="similar to AA sequence:frave:gene18481" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc687t10; alternateUTRof:Thecc1EG026967t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc670t5; inference alignment:Newbler:10:TSA:cgbaP1_g00309t00001" CDS join(531259..531294,531385..531482,531595..531691, 532217..532282,533528..533587,533698..533772, 533923..534007,535198..535256,535695..535739, 536608..536706,536941..536988,537143..537190, 537576..537632) /locus_tag="TCM_026967" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene18481" /codon_start=1 /product="Aldolase-type TIM barrel family protein isoform 1" /protein_id="EOY25581.1" /db_xref="TAIR:AT1G79500.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AV97" /translation="MDTSSVLFNQLKGAEPFFLLAGPNVIESEDHILRMAKHIKTIAT KLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDIPIVTDIHETIQCEP VGRVADIIQIPAFLCRQTDLLVAAAKTGRIINIKKGQFCAPSVMVNSAEKIRLAGNPN VMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADITHSLQQPAGRKLDGGGVASGGL RELIPCIARTAVAVGVDGIFMEVHDNPLNAPVDGPTQWPLRHLEELLEELMAIARVSK GKQRFNIDLTPYHD" CDS join(531259..531294,531385..531482,531595..531691, 532217..532282,533528..533587,533698..533772, 533923..534007,535198..535256,535695..535739, 536608..536706,536941..536988,537143..537190, 537576..537632) /locus_tag="TCM_026967" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene18481" /codon_start=1 /product="Aldolase-type TIM barrel family protein isoform 1" /protein_id="EOY25582.1" /db_xref="TAIR:AT1G79500.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AV97" /translation="MDTSSVLFNQLKGAEPFFLLAGPNVIESEDHILRMAKHIKTIAT KLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDIPIVTDIHETIQCEP VGRVADIIQIPAFLCRQTDLLVAAAKTGRIINIKKGQFCAPSVMVNSAEKIRLAGNPN VMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADITHSLQQPAGRKLDGGGVASGGL RELIPCIARTAVAVGVDGIFMEVHDNPLNAPVDGPTQWPLRHLEELLEELMAIARVSK GKQRFNIDLTPYHD" CDS join(531259..531294,531385..531482,531595..531691, 532217..532282,533528..533587,533698..533772, 533923..534007,535198..535256,535695..535739, 536608..536706,536941..536988,537143..537190, 537576..537632) /locus_tag="TCM_026967" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene18481" /codon_start=1 /product="Aldolase-type TIM barrel family protein isoform 1" /protein_id="EOY25583.1" /db_xref="TAIR:AT1G79500.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AV97" /translation="MDTSSVLFNQLKGAEPFFLLAGPNVIESEDHILRMAKHIKTIAT KLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDIPIVTDIHETIQCEP VGRVADIIQIPAFLCRQTDLLVAAAKTGRIINIKKGQFCAPSVMVNSAEKIRLAGNPN VMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADITHSLQQPAGRKLDGGGVASGGL RELIPCIARTAVAVGVDGIFMEVHDNPLNAPVDGPTQWPLRHLEELLEELMAIARVSK GKQRFNIDLTPYHD" CDS join(531259..531294,531385..531482,531595..531691, 532217..532282,533528..533587,533698..533772, 533923..534007,535198..535256,535695..535739, 536608..536706,536941..536988,537143..537190, 537576..537632) /locus_tag="TCM_026967" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene18481" /codon_start=1 /product="Aldolase-type TIM barrel family protein isoform 1" /protein_id="EOY25584.1" /db_xref="TAIR:AT1G79500.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AV97" /translation="MDTSSVLFNQLKGAEPFFLLAGPNVIESEDHILRMAKHIKTIAT KLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDIPIVTDIHETIQCEP VGRVADIIQIPAFLCRQTDLLVAAAKTGRIINIKKGQFCAPSVMVNSAEKIRLAGNPN VMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADITHSLQQPAGRKLDGGGVASGGL RELIPCIARTAVAVGVDGIFMEVHDNPLNAPVDGPTQWPLRHLEELLEELMAIARVSK GKQRFNIDLTPYHD" CDS join(531259..531294,531385..531482,531595..531691, 532217..532282,533528..533587,533698..533772, 533923..534007,535198..535256,535695..535739, 536608..536706,536941..536988,537143..537190, 537576..537632) /locus_tag="TCM_026967" /note="encoded by transcript variant 5; alternatively spliced; dbxref frave:gene18481" /codon_start=1 /product="Aldolase-type TIM barrel family protein isoform 1" /protein_id="EOY25585.1" /db_xref="TAIR:AT1G79500.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AV97" /translation="MDTSSVLFNQLKGAEPFFLLAGPNVIESEDHILRMAKHIKTIAT KLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDIPIVTDIHETIQCEP VGRVADIIQIPAFLCRQTDLLVAAAKTGRIINIKKGQFCAPSVMVNSAEKIRLAGNPN VMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADITHSLQQPAGRKLDGGGVASGGL RELIPCIARTAVAVGVDGIFMEVHDNPLNAPVDGPTQWPLRHLEELLEELMAIARVSK GKQRFNIDLTPYHD" CDS join(531259..531294,531385..531482,531595..531691, 532217..532282,533528..533587,533698..533772, 533923..534007,535198..535256,535695..535739, 536608..536706,536941..536988,537143..537190, 537576..537632) /locus_tag="TCM_026967" /note="encoded by transcript variant 6; alternatively spliced; dbxref frave:gene18481" /codon_start=1 /product="Aldolase-type TIM barrel family protein isoform 1" /protein_id="EOY25586.1" /db_xref="TAIR:AT1G79500.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AV97" /translation="MDTSSVLFNQLKGAEPFFLLAGPNVIESEDHILRMAKHIKTIAT KLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDIPIVTDIHETIQCEP VGRVADIIQIPAFLCRQTDLLVAAAKTGRIINIKKGQFCAPSVMVNSAEKIRLAGNPN VMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADITHSLQQPAGRKLDGGGVASGGL RELIPCIARTAVAVGVDGIFMEVHDNPLNAPVDGPTQWPLRHLEELLEELMAIARVSK GKQRFNIDLTPYHD" mobile_element 540378..540692 /note="source:CACAO_on_E2_scaffold_1 809 1127" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(541000..542286) /note="source:CACAO_M_E69938_F9_scaffold_9 5056 6354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 542388..543052 /note="source:INTACT72F_F343_scaffold_2-int 123 761" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(543751..548212) /locus_tag="TCM_026970" /note="dbxref CacaoGD:Thecc1EG026970" mRNA complement(join(543751..545096,545178..545392, 545485..545712,545798..546370,546450..546568, 546657..546744,546833..547027,547118..547261, 547346..547438,547535..547601,547687..547895, 548001..548212)) /locus_tag="TCM_026970" /product="Beta-galactosidase 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01015038001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037490t1" /inference="similar to AA sequence:ricco:29739.m003740" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS complement(join(544718..545096,545178..545392, 545485..545712,545798..546370,546450..546568, 546657..546744,546833..547027,547118..547261, 547346..547438,547535..547601,547687..547895, 548001..548162)) /locus_tag="TCM_026970" /note="dbxref ricco:29739.m003740; paralog of Thecc1EG037490t1" /codon_start=1 /product="Beta-galactosidase 7" /protein_id="EOY25587.1" /db_xref="TAIR:AT5G20710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SCV5" /translation="MEFFKSFFAAIIISFFLFHANATNVTHDGRSLIIDGVHRVLISG SIHYPRSTAQMWPDLIRKAKEGGLDTIETYVFWNAHEPIRRQYDFSGNLDLIRFIKTI QDEGLYAVLRIGPYVCAEWNYGGFPVWLHNLPGVSFRTKNDVFMNEMQNFTTLIVDMI KNENLFASQGGPIILAQIENEFGNVMGPYGAGGKEYIQWCSNMAESLGVGVPWIMCQQ QDAPKPMINTCNGFYCDEFKPNNPSSPKMWTENWTGWFKSWGGADPYRTAEDLAYSVA RFYQKGGTFQNYYMYHGGTNFGRTSGGPYITTTYDYNAPLDEYGNPNQPKWGHLKQLH DVLHSMEYTLTHGDVTNTDLGNSVSTTVYSTKEKSSCFLSNAHNQTDAVVKFGGIDYY VPAWSVSILPDCKDEAYNTAKVYAQTSVLVKKPNKAEDEPNSLEWVWRPENIERTAVQ GKGDHHANRIIDQKAMANDASDYLWYMTRVELPKDDPLVTGKATLRVTDSGHVLHAYV NGEYIGSQWAQYGSQKYVFEKEVKLNPGKNLISLLSATVGLQNYGPMFDLNVTGVLSP VELVAHKGNEKVVKDLSSHKWSYKVGLDGVANKLYETDCPSKLKWSADSIPVDRNMTW YKTTFKAPLGNAPVVVDLLGLGKGHAWVNGHSLGRYWPSYIADEHACQTVACDYRGAY SDKKCVSKCGEPTQRWYHVPRSFLKDGENTLVLFEEFGGNPSGVQFQTVEIGTACVNA HEGKKVELSCHNRPISRINFASFGDPQGVCGSFKKTECESTEDAVSILEKECVGKESC SFEISEDKFGKAYCAIKRLAVEAVC" mobile_element complement(551047..551560) /note="source:CACAO_M_E4753_F17_scaffold_2 7305 7818" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 551097..559005 /locus_tag="TCM_026971" /note="dbxref CacaoGD:Thecc1EG026971" mRNA join(551097..551777,552959..554009,554086..554451, 554610..554753,555928..557781,557879..559005) /locus_tag="TCM_026971" /product="Leucine-rich repeat protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021645001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029651t1" /inference="similar to AA sequence:ricco:29835.m000647" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1538t2" mobile_element complement(551561..551922) /note="source:scaffold_2_CACTA_0244 13859 14686" /mobile_element_type="transposon:TIR/CACTA" CDS join(551667..551777,552959..554009,554086..554451, 554610..554753,555928..557781,557879..558009) /locus_tag="TCM_026971" /note="dbxref ricco:29835.m000647; paralog of Thecc1EG029651t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein" /protein_id="EOY25588.1" /db_xref="TAIR:AT3G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1J3" /translation="MWPDLATTTLDRHFPMAESDSGVPDPIVGSGREAPDPALMKQGD SIAKWQVSHSCVLSSIGERLSCNMGCCVLSLIGERLACNMGSHQSYHSLKSLTYCATA VHLLWKTKTKTVKSLGRVEFACVCGILQKQRFMVSSQSLSLVDELVLESYLGNALSIL PQPSCNFHHFCFFVPPTSMDVRKLHFLSSALFIHCCFMVSYAMITVRNLTTDRYALLE FKHHIIDPHNILAKNWTNTQSVCNWVGVSCSAKPSRVIALSLPNMDLTGTVPPHLGNL SLLVSLNLSDNNFHGHFPSTIYNISSLQTISLASNGLSGSLPQDICRHLPKLEALYLH LNEFSGQIPSSIDECSNLQNLTLYLNRFSGIIPRSIGHLTRLKIVDMSGNNLEGEIPW EIGNLLSLEEFAVGDMRLIVGPIPASIFNISSLKVIYLYNNSLSGSIPHNMCHHLVKL ETFHISYNEISGHIPSNIGDCRTLQYLSLSYNRFSGCIPRSIGNSTKLKKIYVGVNDL KGEIPREMENLITLELFSAVDMRLNGVIPPSIFNISSLEVIDVSNNSLSGKLPDMSSV SNLERLIVWGNNLSGNIPDSFCNASKLTLLDLAQNSFHGLIPNTFGNLRFLEVLRLWS NNLTTQTSNGEWSFLSSLANCRHLRVLELSYNPLNALLPNSISNLSTSLQYLRVNDCK IRGKIPMEIGSLSNITALGLALNELSGSIPMTIGRLRNLQALYLDGNRLQGSLPHDLC GLKRLNTLSLGANELDGPLPTCLGDLTSLRYLNLSSNKFHSIIPSSFWSLRDILEVDL SSNYLISPLPLDIENLKVLVYLDLSKNLLSSDIPVTIGSLDDIQLLALSSNRLQGPIP KSLGDLISLKVLDLSNNNLSGVIPKSLEKLLDLKYFDVSFNRLEGQIPSEGPFANFTA ESFMKNYALCGSPRLQVPPCKNTIHRQSKKALVHVLKYVLPTIASVITIVACIIVYKK WQKRSTNSEIGEDSIPLKTWRRVSYNQLSRGTNGFSENNLLGSGSFGSVYKGILSDGT NVAIKVFKLQIDGAFRSFDNECEVLRYILHRNLVKVITSCSNIDFKALVLEYMPNGSL EKWLYSHNFFLDIFQRINIMIDVASALEYLHLGHPMPVIHCDLKPGNVLLDQDMVAHV GDFGIAKLLGEEDSMKQTLTLATIGYMAPEYGSTGILSVKSDVYSYGILLMEVFTRKK PTDEIFTEEMSMKH" gene 559251..565827 /locus_tag="TCM_026972" /note="dbxref CacaoGD:Thecc1EG026972" mRNA join(559251..559767,559836..560050,560399..561059, 561599..561941,562710..562801,563775..563969, 564677..565827) /locus_tag="TCM_026972" /product="Integral membrane protein conserved region (DUF2404), putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s03560.1" /inference="similar to AA sequence:ricco:29681.m001370" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g171t1" CDS join(559588..559767,559836..560050,560399..561059, 561599..561941,562710..562801,563775..563969, 564677..565276) /locus_tag="TCM_026972" /note="dbxref ricco:29681.m001370" /codon_start=1 /product="Integral membrane protein conserved region (DUF2404), putative" /protein_id="EOY25589.1" /db_xref="TAIR:AT1G17820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9I9" /translation="MLSVFIVGLFVGVLAIVSVEALGVLFVLNRLNRKIKKESDATQH PKLQTQQPLDFAYSKQGIVWVLEPEKVPPREPKRKKELLLEVSPSRKHGKIEGNSLIL THSDASRTTIPLKGCVIEAVSATNLPSRKWAKKFPIKMENQTSLIYKGSKIVYLFLET SWEKESWCKALRLASCEDKEKLKWFTMLNLDFHAYLASLNAGYPSFMKPSLGFSAEPI DKGSRLDGTSSKVRLFWKKLSRRASKPGIENKGIWTYQPVREERKTEKQQPFQDSVTN KVPNSSIEENMAFPLSQGFPRSASQSCTSVASDADSEQDRLNFDEGTLCWNLIISRIF FDIKGNAGFKSSIQTRIQRTLSNMRTPSYIGEIICTGVDIGNLPPYIHAMRLLATDMN EVWAFEVDAEYSGGALLDVETRLEVQDQAFQKGIVDANSESNSVENMSSDLLEGFEHF GKHLNLPEEDEVDPKVDGLKGSKGTSTTSYVSRWKSVLNSVAKQVSQVPLSLSIRVAS LRGTLRLYIKPPPSDQLWFGFTSMPDIEFDLESSIGEHKITSGHIALFLISRFKAAIR ETMVLPNCESACIPWMLAEKDDWVPKKVAPFIWLNQEAVTDNNIVREAQGPQLTESKA KENRRTSDSEHQQPKVDSLQPPVVECAAMPSSSSVDSSSIRSKSLQDLRTPLLATDEP HEACQENREEASDSESLSRPLVEFERQSDVIDDNDSRPKKMGRKARMLDLGKKMGEKF EEKRRHIEEKSRHIVEKMRGP" gene complement(565963..575546) /locus_tag="TCM_026974" /note="dbxref CacaoGD:Thecc1EG026974" mRNA complement(join(565963..566621,566711..566952, 567181..567462,567549..567819,568081..568412, 568955..569237,570743..570815,572043..572138, 573170..573567,573853..574006,574684..574964, 575101..575546)) /locus_tag="TCM_026974" /product="Subtilase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g21920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039425t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s43080.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g204t2" mRNA complement(join(566299..566952,567181..567462, 567549..567819,568081..568412,568955..569237, 570743..570815,572043..572138,573170..573567, 573853..574006,574699..574964,575101..575266)) /locus_tag="TCM_026974" /product="Subtilase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g21920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039425t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s43080.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g204t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g204t2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc37t14" CDS complement(join(566525..566952,567181..567462, 567549..567819,568081..568412,568955..569237, 570743..570815,572043..572138,573170..573567, 573853..574006,574699..574913)) /locus_tag="TCM_026974" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG039425t2" /codon_start=1 /product="Subtilase family protein isoform 2" /protein_id="EOY25591.1" /db_xref="Phytozome:POPTR_0001s43080.1" /db_xref="TAIR:AT4G20430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI12" /translation="MGNVCWVYLVLAVCFGLFVNTLSQGDSDSDAITAVYIVTLKQVP AVHHFEEELRRKGNQGFHHGGASGRLNRNNSRSHQNSSSYFSRVHDSILRRALRREKY LKLYSYHYLINGFAVLVTTEQAGKLSRRREVANVVLDFSVRTATTHTPQFLGLPKGAW SQEGGYETAGEGIVIGFIDTGIDPTHPSFADHVSDHSYPVPAHFSGICEVTRDFPSGS CNRKLVGARHFAASAITRGIFNSSQDYASPFDGDGHGTHTASVAAGNHGIPVVVAGHH FGNASGMAPHSHIAVYKALYKSFGGFAADVVAGIDQAAQDGVDIISLSITPNRRPPGI ATFFNPIDMALLSAVKAGIFVVQAAGNTGPSPKSMSSFSPWIFTIGAASHDRAYSNSI ILGNNVTIPGVGLASGTDKDETYTLISALHALCNDTTLADDMYVGECQDSSNFNPELI EGNLLICSYSIRFVLGLSTIKLAVQTAKNLSAAGVVFYMDPFVIGFQLNPTPLEMPGI IIPSPDDSKILLQYYNSSLERDGLTKKIIRFGAVASISGGLKANYSVSAPKVMYYSAR GPDPEDSFLDDADIMKPNLIAPGNLIWAAWSSHGTDSVEFQGENFAMMSGTSMAAPHI AGLAALIKQKFPYFSPAAIASALSTTASLYDKSGGPIMAQRAYTNPDLNQSPATPFDM GSGFVNATSALDPGLILDSTYDDYMSFLCGINGSGPVVLNYTGQNCWVYNSTIGSADL NLPSITIAKLNQSKTVLRSVTNIAGNETYKVGWSAPYGVSMKVSPTHFFIGTGEKQVL TIIFNATMNNISASFGRIGLFGNQGHNISIPLSVIVKFSYKRTDG" CDS complement(join(566583..566621,566711..566952, 567181..567462,567549..567819,568081..568412, 568955..569237,570743..570815,572043..572138, 573170..573567,573853..574006,574684..574913)) /locus_tag="TCM_026974" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG039425t2" /codon_start=1 /product="Subtilase family protein isoform 1" /protein_id="EOY25590.1" /db_xref="Phytozome:POPTR_0001s43080.1" /db_xref="TAIR:AT4G20430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI12" /translation="MGNVCWVYLVLAVCFGLFVNTLSQGDSDSDAITAVYIVTLKQVP AVHHFEEELRRKGNQGFHHGGASGRLNRFHKPRNNSRSHQNSSSYFSRVHDSILRRAL RREKYLKLYSYHYLINGFAVLVTTEQAGKLSRRREVANVVLDFSVRTATTHTPQFLGL PKGAWSQEGGYETAGEGIVIGFIDTGIDPTHPSFADHVSDHSYPVPAHFSGICEVTRD FPSGSCNRKLVGARHFAASAITRGIFNSSQDYASPFDGDGHGTHTASVAAGNHGIPVV VAGHHFGNASGMAPHSHIAVYKALYKSFGGFAADVVAGIDQAAQDGVDIISLSITPNR RPPGIATFFNPIDMALLSAVKAGIFVVQAAGNTGPSPKSMSSFSPWIFTIGAASHDRA YSNSIILGNNVTIPGVGLASGTDKDETYTLISALHALCNDTTLADDMYVGECQDSSNF NPELIEGNLLICSYSIRFVLGLSTIKLAVQTAKNLSAAGVVFYMDPFVIGFQLNPTPL EMPGIIIPSPDDSKILLQYYNSSLERDGLTKKIIRFGAVASISGGLKANYSVSAPKVM YYSARGPDPEDSFLDDADIMKPNLIAPGNLIWAAWSSHGTDSVEFQGENFAMMSGTSM AAPHIAGLAALIKQKFPYFSPAAIASALSTTASLYDKSGGPIMAQRAYTNPDLNQSPA TPFDMGSGFVNATSALDPGLILDSTYDDYMSFLCGINGSGPVVLNYTGQNCWVYNSTI GSADLNLPSITIAKLNQSKTVLRSVTNIAGNETYKVGWSAPYGVSMKLWEDWTFWKPR S" mRNA complement(join(<566711..566841,567181..567462, 567549..567819,568081..568412,568955..569237, 570743..570815,572043..572138,573170..573567, 573853..574006,574684..575384)) /locus_tag="TCM_026974" /product="Subtilase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g21920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039425t2" /inference="similar to AA sequence:Phytozome:GSVIVT01037948001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc38t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g204t2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc37t14" CDS complement(join(<566711..566841,567181..567462, 567549..567819,568081..568412,568955..569237, 570743..570815,572043..572138,573170..573567, 573853..574006,574684..574913)) /locus_tag="TCM_026974" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG039425t2" /codon_start=1 /product="Subtilase family protein isoform 3" /protein_id="EOY25592.1" /db_xref="Phytozome:GSVIVT01037948001" /db_xref="TAIR:AT4G20430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI12" /translation="MGNVCWVYLVLAVCFGLFVNTLSQGDSDSDAITAVYIVTLKQVP AVHHFEEELRRKGNQGFHHGGASGRLNRFHKPRNNSRSHQNSSSYFSRVHDSILRRAL RREKYLKLYSYHYLINGFAVLVTTEQAGKLSRRREVANVVLDFSVRTATTHTPQFLGL PKGAWSQEGGYETAGEGIVIGFIDTGIDPTHPSFADHVSDHSYPVPAHFSGICEVTRD FPSGSCNRKLVGARHFAASAITRGIFNSSQDYASPFDGDGHGTHTASVAAGNHGIPVV VAGHHFGNASGMAPHSHIAVYKALYKSFGGFAADVVAGIDQAAQDGVDIISLSITPNR RPPGIATFFNPIDMALLSAVKAGIFVVQAAGNTGPSPKSMSSFSPWIFTIGAASHDRA YSNSIILGNNVTIPGVGLASGTDKDETYTLISALHALCNDTTLADDMYVGECQDSSNF NPELIEGNLLICSYSIRFVLGLSTIKLAVQTAKNLSAAGVVFYMDPFVIGFQLNPTPL EMPGIIIPSPDDSKILLQYYNSSLERDGLTKKIIRFGAVASISGGLKANYSVSAPKVM YYSARGPDPEDSFLDDADIMKPNLIAPGNLIWAAWSSHGTDSVEFQGENFAMMSGTSM AAPHIAGLAALIKQKFPYFSPAAIASALSTTASLYDKSGGPIMAQRAYTNPDLNQSPA TPFDMGSGFVNATSALDPGLILDSNLNLPSITIAKLNQSKTVLRSVTNIAGNETYKVG WSAPYGVSMK" mRNA complement(join(566812..567462,567549..567819, 568081..568412,568955..569237,570743..570815, 572043..572138,573170..573567,573853..574006, 574684..575384)) /locus_tag="TCM_026974" /product="Subtilase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g21920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039425t2" /inference="similar to AA sequence:Phytozome:GSVIVT01037948001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc38t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g204t2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc37t14" CDS complement(join(567161..567462,567549..567819, 568081..568412,568955..569237,570743..570815, 572043..572138,573170..573567,573853..574006, 574684..574913)) /locus_tag="TCM_026974" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG039425t2" /codon_start=1 /product="Subtilase family protein isoform 4" /protein_id="EOY25593.1" /db_xref="Phytozome:GSVIVT01037948001" /db_xref="TAIR:AT4G20430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI12" /translation="MGNVCWVYLVLAVCFGLFVNTLSQGDSDSDAITAVYIVTLKQVP AVHHFEEELRRKGNQGFHHGGASGRLNRFHKPRNNSRSHQNSSSYFSRVHDSILRRAL RREKYLKLYSYHYLINGFAVLVTTEQAGKLSRRREVANVVLDFSVRTATTHTPQFLGL PKGAWSQEGGYETAGEGIVIGFIDTGIDPTHPSFADHVSDHSYPVPAHFSGICEVTRD FPSGSCNRKLVGARHFAASAITRGIFNSSQDYASPFDGDGHGTHTASVAAGNHGIPVV VAGHHFGNASGMAPHSHIAVYKALYKSFGGFAADVVAGIDQAAQDGVDIISLSITPNR RPPGIATFFNPIDMALLSAVKAGIFVVQAAGNTGPSPKSMSSFSPWIFTIGAASHDRA YSNSIILGNNVTIPGVGLASGTDKDETYTLISALHALCNDTTLADDMYVGECQDSSNF NPELIEGNLLICSYSIRFVLGLSTIKLAVQTAKNLSAAGVVFYMDPFVIGFQLNPTPL EMPGIIIPSPDDSKILLQYYNSSLERDGLTKKIIRFGAVASISGGLKANYSVSAPKVM YYSARGPDPEDSFLDDADIMKPNLIAPGNLIWAAWSSHGTDSVEFQGENFAMMSGTSM AAPHIAGLAALIKQKFPYFSPAAIASALSTTASLYDKSGGPIMAQRAYTNPDLNQSPA TPFDMGSGFVNATSALDPGLILDSSKSFCF" mobile_element 567862..567911 /note="source:scaffold_5_CACTA_0580 13309 13358" /mobile_element_type="transposon:TIR/CACTA" mobile_element 567891..567973 /note="source:scaffold_5_CACTA_0596 1805 1879" /mobile_element_type="transposon:TIR/CACTA" gene complement(579023..580502) /locus_tag="TCM_026976" /note="dbxref CacaoGD:Thecc1EG026976" mRNA complement(579023..580502) /locus_tag="TCM_026976" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" CDS complement(579594..580433) /locus_tag="TCM_026976" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25594.1" /translation="MIPLLRIIYTRMLSGKAEPFMAEIDGKLYVLNSSKSIYGCTKTF EVFDPKLNQRTALSDPPFITGIHPVRPGFAEFCYLTLTSFKEIFLSSPAFGVLRYDID DDIWYSDMTFGPPLLPLMDKSGVSFNFGDEEVCIGFENGFLTAYLVKEIWGFKKVTKV QKLGLIASEDNGCCFARLGGLKMCLVANTEDSDLDETDVVVATCEFERLKDIAASQGK PVVDDTNGCDFTLEEREAILRSDFLERDFVDFRILSKYCYPRDRFATGSCVLWKAIGC FVL" gene 583713..586365 /locus_tag="TCM_026977" /note="dbxref CacaoGD:Thecc1EG026977" mRNA join(583713..584146,584679..584813,584902..585108, 585448..585527,586047..586365) /locus_tag="TCM_026977" /product="Coatomer epsilon subunit" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026982t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s15930.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3267t2" CDS join(584072..584146,584679..584813,584902..585108, 585448..585527,586047..586143) /locus_tag="TCM_026977" /note="paralog of Thecc1EG026982t1" /codon_start=1 /product="Coatomer epsilon subunit" /protein_id="EOY25595.1" /db_xref="Phytozome:POPTR_0011s15930.1" /db_xref="TAIR:AT1G30630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MAX6" /translation="MSLSGPNSQMATATSISSMSGSSMMHALNVQIFIKMHRSDYAEK QIRVMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVC CMHMGNFDEAETLLLEALNKASLNCGYFFILSRFKLIDAKDPETLANLVVCSLHLGKS SSRYLSEIHVSYPSHKKKKKKILVHHENKQHNHMQFV" gene complement(586921..588061) /locus_tag="TCM_026978" /note="dbxref CacaoGD:Thecc1EG026978" mRNA complement(join(586921..587160,587302..587534, 587624..587708,587782..588061)) /locus_tag="TCM_026978" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026976t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02626t00002" CDS complement(join(587041..587160,587302..587534, 587624..587708,587782..587973)) /locus_tag="TCM_026978" /note="paralog of Thecc1EG026976t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25596.1" /translation="MSMCFDAVGGEGLAYFTFAVETAALLSSQMKEPPPLEKLASVEG DKTCAYMGWGALGPQIPLAGDASPGQPSFVPYTRMLSAKAEPFMAEIDGLSDPPFITG RLPARPGITEFSYLTLTSYKEIFLSSPAFGVLRYNIDRNFWYSDIAFGRPLLPFVDKS GVSFNFGDEDGQKMCLVTIIEDPDLDEIDVVVATCEFSGSRTLQLLKAN" mobile_element 588670..588816 /note="source:CACAO_PIF_E465_scaffold_115 210 357" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 589059..594451 /locus_tag="TCM_026979" /note="dbxref CacaoGD:Thecc1EG026979" mRNA join(589059..589304,590452..590579,591235..591304, 591683..591787,592163..592219,593377..593494, 593585..593651,594073..594376) /locus_tag="TCM_026979" /product="NagB/RpiA/CoA transferase-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15900.1" /inference="similar to AA sequence:Phytozome:GSVIVT01037941001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc344t13; inference alignment:Newbler:10:TSA:cgbaL_g00417t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc3t34_C2" mRNA join(589067..589304,590452..590579,591235..591304, 591683..591787,591985..592080,592163..592219, 593377..593494,593585..593651,594073..594451) /locus_tag="TCM_026979" /product="NagB/RpiA/CoA transferase-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15900.1" /inference="similar to AA sequence:Phytozome:GSVIVT01037941001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00417t00001" CDS join(589173..589304,590452..590579,591235..591304, 591683..591787,591985..592080,592163..592219, 593377..593494,593585..593651,594073..594151) /locus_tag="TCM_026979" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="NagB/RpiA/CoA transferase-like superfamily protein isoform 1" /protein_id="EOY25597.1" /db_xref="Phytozome:GSVIVT01037941001" /db_xref="TAIR:AT5G44520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7MM04" /translation="MASAIPHLHFPVAWKTNPRIRKRKPATSCSLSEASPLFRAAKHT IDAYVKSGMVIGLGSGQASGMAIEYLGQQLRAGALKDLVGIPTSVVSASEAAKAGIPL GEYENSSQIDFAFDDVDIIEERTLISVIGRRRLQGEESIIQEKLVVSMADQLVFMVKE DLYKCGLEGSIPVLVESLNWLETAEEIDDLFLGDAEVWRRPSIGHADPLGGDFPLVTR EGHSVLDVIFTSPIASLAEVAESLEKVDGVVDHGVVSKFPCKAIVASESGLSIVGNRP TNTVGGV" CDS join(589173..589304,590452..590579,591235..591304, 591683..591787,592163..592219,593377..593494, 593585..593651,594073..594151) /locus_tag="TCM_026979" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="NagB/RpiA/CoA transferase-like superfamily protein isoform 2" /protein_id="EOY25598.1" /db_xref="Phytozome:GSVIVT01037941001" /db_xref="TAIR:AT5G44520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7MM04" /translation="MASAIPHLHFPVAWKTNPRIRKRKPATSCSLSEASPLFRAAKHT IDAYVKSGMVIGLGSGQASGMAIEYLGQQLRAGALKDLVGIPTSVVSASEAAKAGIPL GEYENSSQIDFAFDDVDIIEERTLISVIGRRRLQGEESIIQEKLNWLETAEEIDDLFL GDAEVWRRPSIGHADPLGGDFPLVTREGHSVLDVIFTSPIASLAEVAESLEKVDGVVD HGVVSKFPCKAIVASESGLSIVGNRPTNTVGGV" gene 595831..606759 /locus_tag="TCM_026980" /note="dbxref CacaoGD:Thecc1EG026980" mRNA join(595831..596054,602434..603496,603590..603777, 603881..604169,604576..604911,606414..606759) /locus_tag="TCM_026980" /product="Cytochrome P450 716B1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036749t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s15910.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06994t00001" mobile_element 598494..598548 /note="source:INTACT84_F12_scaffold_5-int 10617 10672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 600860..600953 /note="source:scaffold_4_CACTA_0482 7636 7729" /mobile_element_type="transposon:TIR/CACTA" CDS join(602539..603496,603590..603777,603881..604169, 604576..604814) /locus_tag="TCM_026980" /note="paralog of Thecc1EG036749t1" /codon_start=1 /product="Cytochrome P450 716B1" /protein_id="EOY25599.1" /db_xref="Phytozome:POPTR_0011s15910.1" /db_xref="TAIR:AT5G36110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0V7" /translation="MELSLAVLLAPIVVTVVVVVVVFGLGARPRSSTSSGAKDLPPGS LGWPVMGETLEFLFGKPEKFVFDRMKKYSPHIFKTKILGEETAVICGPEGHKFLFSNE QKLFTAFRPHSMQKLFRSYQAAAPVQIARDAEAKILRSPGFLKPEALVRYLGKMDSIT QQQMEKYWQGKDEVKAFALAKTLTLTLACRFFLGIDDPERISRLVTNFDDITLGMHSI PVNFPGTIFYRANRAAAAIRKELREVIKEKKTAMATGAPMQDILSHMIVATDPSGKYM PEAEIADKIMGLLVAGYSTVATAMTFFMKYVGEWPDIYDKILAEQSEVAAAKKPGELL DWDDIQKMKYSWNVLYEVMRLTPPLQGTFREALTEFTYAGFTIPKGWKVYWTVSTANR NPEFFPEPDKFDPSRYDEGNTFPPFTFVPFGGGPRMCPGKEYARLAILTFVHNVVKRF KWELVEPKEKIIGDMMPTPEKGLPIRLRHTAPLVVPKPGPMMKIFGLALVKATFDLTI MPSFNLFTPIFDCVFLVCPLRLAARNKQVGRVKGVKDLKVKLNKSQQIK" gene complement(606715..611704) /locus_tag="TCM_026981" /note="dbxref CacaoGD:Thecc1EG026981" mRNA complement(join(606715..607031,607995..608036, 610738..611704)) /locus_tag="TCM_026981" /product="Small nuclear ribonucleoprotein associated protein B" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15920.2" /inference="similar to AA sequence:ricco:29776.m000486" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15632t1" CDS complement(610751..611626) /locus_tag="TCM_026981" /note="dbxref ricco:29776.m000486" /codon_start=1 /product="Small nuclear ribonucleoprotein associated protein B" /protein_id="EOY25600.1" /db_xref="TAIR:AT5G44500.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NAA2" /translation="MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGD CEEFRKLPPAKGKKNSNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRSKAAS ANAVPGPGVGRAAGRGIPTGPLVQAQPGLAGPVRGVGGPAPGMMQPQMSRPPVPQLSA PPMTYPPAGGAPPVIRPPGQMPPGAYPGQPQPPQMPRGPPPQVPPPAFGVRPPQQFPV PPPQYGQRPMVPPPGPMMRGPPAPPPPRPGMPAPPPPRPGMPPPPGAVPVFGPPRPGM PPPPNPQNQQQNQQQ" mobile_element complement(612560..612766) /note="source:scaffold_5_CACTA_0580 11359 11573" /mobile_element_type="transposon:TIR/CACTA" gene 612957..617445 /locus_tag="TCM_026982" /note="dbxref CacaoGD:Thecc1EG026982" mRNA join(612957..613241,613329..613418,613527..613678, 614970..615105,615194..615349,615740..615819, 617148..617445) /locus_tag="TCM_026982" /product="Coatomer epsilon subunit isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026977t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s15930.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10149t00001" mRNA join(612996..613241,613329..613418,613527..613678, 614970..615105,615194..615353,615740..615819) /locus_tag="TCM_026982" /product="Coatomer epsilon subunit isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026977t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s15930.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc3t35; inference alignment:Newbler:10:TSA:cgbaB_g10149t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc3t32" CDS join(613068..613241,613329..613418,613527..613678, 614970..615105,615194..615349,615740..615819, 617148..617241) /locus_tag="TCM_026982" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026977t1" /codon_start=1 /product="Coatomer epsilon subunit isoform 1" /protein_id="EOY25601.1" /db_xref="Phytozome:POPTR_0011s15930.1" /db_xref="TAIR:AT1G30630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64748" /translation="MAAAAAVPDHLFNLRNNFYLGSYQAAINNSDLPNLSPDDAVERD CLVYRSYIALGSYQLVINEIDSSAATPLQAVKLLALYLSNPHEKESTISSLKEWLSDP AIGNNAILRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFIKMHRSDYAEKQL RVMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCM HMGNFDEAETLLLEALNKDAKDPETLANLVVCSLHLGKSSSRYLSQLKLTHPEHVLVK RASSAEDSFERAVQSVA" CDS join(613068..613241,613329..613418,613527..613678, 614970..615105,615194..615353,615740..615756) /locus_tag="TCM_026982" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026977t1" /codon_start=1 /product="Coatomer epsilon subunit isoform 2" /protein_id="EOY25602.1" /db_xref="Phytozome:POPTR_0011s15930.1" /db_xref="TAIR:AT1G30630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64748" /translation="MAAAAAVPDHLFNLRNNFYLGSYQAAINNSDLPNLSPDDAVERD CLVYRSYIALGSYQLVINEIDSSAATPLQAVKLLALYLSNPHEKESTISSLKEWLSDP AIGNNAILRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFIKMHRSDYAEKQL RVMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCM HMGNFDEAETLLLEALNKARCKGS" gene complement(617840..624425) /locus_tag="TCM_026984" /note="dbxref CacaoGD:Thecc1EG026984" mRNA complement(join(617840..618575,619510..619639, 620176..620270,620418..620559,621528..621619, 621720..621827,621938..622051,622660..622784, 623185..623340,624268..624425)) /locus_tag="TCM_026984" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s46400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002011t1" /inference="similar to AA sequence:ricco:29776.m000489" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3703t1" mRNA complement(join(617840..618575,619510..619639, 620176..620270,620418..620559,621528..621619, 621720..621827,621938..622051,622660..622784, 623185..623340,624014..624069)) /locus_tag="TCM_026984" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s46400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002011t1" /inference="similar to AA sequence:ricco:29776.m000489" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b026094t1a2; alternateUTRof:Thecc1EG026984t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3703t1" CDS complement(join(618204..618575,619510..619639, 620176..620270,620418..620559,621528..621619, 621720..621827,621938..622051,622660..622784, 623185..623245)) /locus_tag="TCM_026984" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29776.m000489; paralog of Thecc1EG002011t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /protein_id="EOY25603.1" /db_xref="TAIR:AT1G30620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SA77" /translation="MLNFARGRIQPRSTRSMPFAGMDYPDPKRKSNFVGKILLAATLT ALCIIMLKQSPTFSTPSRFSQHEEGVTHVLVTGGAGYIGSHAALRLLKESYRVTIVDN LSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKIFSENAFDAVMHFAAVAYVGE STLDPLKYYHNITSNTLVVLESMAAHGVKTLIYSSTCATYGEPEKMPITEETPQVPIN PYGKAKKMAEDIILDFCKNSNMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGA CFDAARGIIPGLKVKGTDYKTHDGTCIRDYIDVTDLVDAHVKALQKAKPRKVGIYNVG TGRGRSVKEFVEACKKATGVDIKVDYLPRRPGDYAEVFSDPTKIRLELNWTAQHTELQ KSLQTAWRWQKAHRDGYGSS" CDS complement(join(618204..618575,619510..619639, 620176..620270,620418..620559,621528..621619, 621720..621827,621938..622051,622660..622784, 623185..623245)) /locus_tag="TCM_026984" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29776.m000489; paralog of Thecc1EG002011t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /protein_id="EOY25604.1" /db_xref="TAIR:AT1G30620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SA77" /translation="MLNFARGRIQPRSTRSMPFAGMDYPDPKRKSNFVGKILLAATLT ALCIIMLKQSPTFSTPSRFSQHEEGVTHVLVTGGAGYIGSHAALRLLKESYRVTIVDN LSRGNIGAVKVLQELFPEPGRLQFIYADLGDAKAVNKIFSENAFDAVMHFAAVAYVGE STLDPLKYYHNITSNTLVVLESMAAHGVKTLIYSSTCATYGEPEKMPITEETPQVPIN PYGKAKKMAEDIILDFCKNSNMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGA CFDAARGIIPGLKVKGTDYKTHDGTCIRDYIDVTDLVDAHVKALQKAKPRKVGIYNVG TGRGRSVKEFVEACKKATGVDIKVDYLPRRPGDYAEVFSDPTKIRLELNWTAQHTELQ KSLQTAWRWQKAHRDGYGSS" gene complement(626732..634432) /locus_tag="TCM_026986" /note="dbxref CacaoGD:Thecc1EG026986" mRNA complement(join(626732..626954,633459..634432)) /locus_tag="TCM_026986" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage" CDS complement(join(626859..626954,633459..633974)) /locus_tag="TCM_026986" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25605.1" /translation="MCRRFLRRRCQGMFRLVRRSSSDSPLNPKPLPPSPEDSPPGSVP PLSYFDPISYLEKSVVGNNLDHFNKSEELLEKVFHHHHLSEINSTLTHLAEVSAVLSH RDMIHTMNQISKLITQIGTSRLMKQGPPNEDIVKINVRLGDLSHTLIEMSKLMNQAGK EELTKINAALRDPPMGVQLVVGPIRTIPSSKTLLCPRRVVSQS" mobile_element complement(628470..628631) /note="source:scaffold_4_CACTA_0483 992 1152" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(632223..632324) /note="source:scaffold_1_CACTA_0001 16777 16880" /mobile_element_type="transposon:TIR/CACTA" gene 634827..640333 /locus_tag="TCM_026987" /note="dbxref CacaoGD:Thecc1EG026987" mRNA join(634827..635953,636363..637289,637593..637724, 637928..638109,638216..638327,638960..639103, 639584..640333) /locus_tag="TCM_026987" /product="Hydroxyproline-rich glycoprotein family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28357.m000097" /inference="similar to AA sequence:Phytozome:GSVIVT01021753001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc331t6" mRNA join(634901..635953,636363..637289,637593..637724, 637928..638109,638216..638327,638493..638538, 638960..639103,639584..639610) /locus_tag="TCM_026987" /product="Hydroxyproline-rich glycoprotein family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:28357.m000097" /inference="similar to AA sequence:Phytozome:GSVIVT01021753001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc341t3; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc341t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc331t6" CDS join(635180..635953,636363..637289,637593..637724, 637928..638109,638216..638327,638960..639103, 639584..639664) /locus_tag="TCM_026987" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein isoform 1" /protein_id="EOY25606.1" /db_xref="Phytozome:GSVIVT01021753001" /db_xref="TAIR:AT3G25690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0W7" /translation="MREENPSENRAKASKFADQNQAPRSHNTKTTTHQSKPKSSWGSH IVKGFTADKKTKVQTITVPTKKETISNSDAGNQKNPSLASHSRVKRSLISDLACSVNA NQVHPQVYQTHRRQSSGSRDLFIELDHVRSLLQESKERELKLQAELAEWKTNAKVLDL ERQLQRRNSEVDDLSHRVGLLESEKTSLCEQVATLSSILERNEDNLEISKEPQSIRNL EMEVVELRRLNKELQLQKRNLACKLSSLESELASLAKANESDVVAKIKAEASMLRHTN ENLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELRNSCSTMNFDKTLSPAQSKGEYV DTPNSLSCKSPEYSSVMRLSLIKKLKKWPISSQDFSSTECAANLVDKDWVHLEEGRSP GRRHSISGSKCYVEELIPNKRRQSDGFMCTKEVEREAEPLSSQKYGSVQRMRFFGNCQ ETNKPAASLDVEKRALRIPNPPPRPSCSISNGPKEESSTQIPPPPPPPPPPPPKFSVR SGAGLVQRAPQVVEFYHSLMKRDSRKDSTNGGICDVPDVANVRSSMIGEIENRSSHLL AIKADVETQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELCYLVDERAVLKHFAWP EKKADTLREAAFGYRDLKKLESEVLYYKDDSRMPCDIALKKMVALSEKMERTVYNLLR TRESSMRNCKQFQIPTDWMLDNGIISKIKLGSVKLAKKYMKRVAMELQLKATLEKDPS MDYMLLQGVRFAFRIHQFAGGFDSETMHAFEELRNLANLLNKK" CDS join(635180..635953,636363..637289,637593..637724, 637928..638109,638216..638327,638493..638538, 638960..638964) /locus_tag="TCM_026987" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein isoform 2" /protein_id="EOY25607.1" /db_xref="Phytozome:GSVIVT01021753001" /db_xref="TAIR:AT3G25690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0W7" /translation="MREENPSENRAKASKFADQNQAPRSHNTKTTTHQSKPKSSWGSH IVKGFTADKKTKVQTITVPTKKETISNSDAGNQKNPSLASHSRVKRSLISDLACSVNA NQVHPQVYQTHRRQSSGSRDLFIELDHVRSLLQESKERELKLQAELAEWKTNAKVLDL ERQLQRRNSEVDDLSHRVGLLESEKTSLCEQVATLSSILERNEDNLEISKEPQSIRNL EMEVVELRRLNKELQLQKRNLACKLSSLESELASLAKANESDVVAKIKAEASMLRHTN ENLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELRNSCSTMNFDKTLSPAQSKGEYV DTPNSLSCKSPEYSSVMRLSLIKKLKKWPISSQDFSSTECAANLVDKDWVHLEEGRSP GRRHSISGSKCYVEELIPNKRRQSDGFMCTKEVEREAEPLSSQKYGSVQRMRFFGNCQ ETNKPAASLDVEKRALRIPNPPPRPSCSISNGPKEESSTQIPPPPPPPPPPPPKFSVR SGAGLVQRAPQVVEFYHSLMKRDSRKDSTNGGICDVPDVANVRSSMIGEIENRSSHLL AIKADVETQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELCYLVDERAVLKHFAWP EKKADTLREAAFGYRDLKKLESEVLYYKDDSRMPCDIALKKMVALSEKMERTVYNLLR TRESSMRNCKQFQIPTDWMLDNGIISKRSRKAKRTCALLSYAY" mobile_element complement(640285..640351) /note="source:INTACT151F_F342_scaffold_2-int 6966 7031" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 642502..643466 /locus_tag="TCM_026988" /note="dbxref CacaoGD:Thecc1EG026988" mRNA 642502..643466 /locus_tag="TCM_026988" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:28357.m000099.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042203t1" /inference="similar to AA sequence:Phytozome:Glyma08g08320.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11898t00001" CDS 642717..643385 /locus_tag="TCM_026988" /note="paralog of Thecc1EG042203t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25608.1" /db_xref="Phytozome:Glyma08g08320.1" /db_xref="TAIR:AT1G07090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8QTB1" /translation="MSAAVAAAVAAACVSDKSSSSSVSVFSPPSPQPTLPLSRYESQK RRDWNTFGQYLRNHRPPLALSRCSGAHVLEFLKYLDQFGKTKVHTQNCPFFGHPHPPA PCPCPLRQAWGSLDALIGRLRAAFEENGGQPELNPFGARAVRLYLREVRDVQAKARGI AYEKKKRKKPQQQIQSTATDTYEIGNHFQQGVSGQSSEAKRAMAVGNSLGGGGSMIAL SVLN" mobile_element complement(644836..644888) /note="source:CACAO_M_E34934_F98_scaffold_5 2040 2092" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 644849..644899 /note="source:CACAO_PIF_E144_scaffold_10 6020 6072" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(645138..652551) /locus_tag="TCM_026989" /note="dbxref CacaoGD:Thecc1EG026989" mRNA complement(join(645138..645631,646732..646792, 646877..646941,648201..648427,649802..651972, 652057..652516)) /locus_tag="TCM_026989" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene27128" /inference="similar to AA sequence:ricco:28357.m000095" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc782t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g194t1" mRNA complement(join(645245..645631,646732..646792, 646877..646941,648201..648427,649802..652544)) /locus_tag="TCM_026989" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene27128" /inference="similar to AA sequence:frave:gene27128" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g194t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g194t1" mRNA complement(join(645245..645631,646744..646941, 648201..648427,649802..652544)) /locus_tag="TCM_026989" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene27128" /inference="similar to AA sequence:frave:gene27128" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g194t2; alternateUTRof:Thecc1EG026989t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g194t1" mRNA complement(join(645245..645631,646732..646941, 648201..648427,649802..652544)) /locus_tag="TCM_026989" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene27128" /inference="similar to AA sequence:frave:gene27128" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g194t3; alternateUTRof:Thecc1EG026989t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g194t1" mRNA complement(join(645607..645631,646744..646792, 646877..646941,648201..648427,649802..652516)) /locus_tag="TCM_026989" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene27128" /inference="similar to AA sequence:frave:gene27128" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc782t4; alternateUTRof:Thecc1EG026989t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g194t1" mRNA complement(join(648398..648443,649802..652551)) /locus_tag="TCM_026989" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene27128" /inference="similar to AA sequence:frave:gene27128" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc836t1; alternateUTRof:Thecc1EG026989t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g194t1" CDS complement(join(649889..651972,652057..652390)) /locus_tag="TCM_026989" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28357.m000095" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 2" /protein_id="EOY25610.1" /db_xref="TAIR:AT4G21300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STE1" /translation="MYQRNLRSICKLIAPLTNVHTTTSQHIPRPSEFPTTQLASFLQS TSFPSNLQQGKQVHARLILNEITTTDPLLLAMYLRCGSFNDAKNMFYRIDLGCVKRWN LMIRGLVKMVKACSGLNNVRFGTLIHEAIMSMGFEVNVFVGSSLINFYVENGHVDRAR PLFDKIPVRDCVLWNVMLNGYVKCEELDKAMEIFEEMRKGETKPDEVTFAAIFSLCAS EGMVDFGTQLHGLVVCCGLEFDSVVANALLSMYSKCGWLSDAHKLFGMMPQADLVSWN GMISGYVQNGFMQDASCLFNEMISSGLKPDAITFSSFLPAVTGLGCFRKGKEIHGYIL RHGVSLDVFLKSALIDVYFKCRDVEMARKVYNQRTEVDVVMCTAMISGYVLNGMNNDA LEIFRWLLKEKIRPNAVTLASVLPACADLAALKVGKELHGYIIKNGLDCGCHVGSAVI DMYAKCGRLDVTHDIFRRLSERDSVCWNSMITSCSQNGKPEKAIDLFCWMGSTGMKYD CVSISAALSACANLPALHYGKEIHGFMIKGSFCSDPFAKSALIDMYAKCGNLGSSQHV FDMMEEKNEVSWNSIIAAYGNHGRLEDCLALFHEMLKNEIQPDHVTFLAIISACGHAG KVDDGIHYFQSMTEEYGITARMEHYACVVDLFGRAGRLNEAFETIKSMPFSPDAGVWG TLLGACRNHGNVELAEFASRHLFDLDPQNSGYYVLLSNLLADAGHWGSVLKIRSLMKE RGVQKVPGYSWIEVNNTTHMFVAADESHPRSSHIYSLLKTLLLELKREGYVPQLYLPM HPQHMVS" CDS complement(649889..652390) /locus_tag="TCM_026989" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene27128" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1" /protein_id="EOY25609.1" /db_xref="TAIR:AT4G21300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STE1" /translation="MYQRNLRSICKLIAPLTNVHTTTSQHIPRPSEFPTTQLASFLQS TSFPSNLQQGKQVHARLILNEITTTDPLLLAMYLRCGSFNDAKNMFYRIDLGCVKRWN LMIRGLVKMGWFHLGLLFYFKMLGCGVSPDNFTFPSVVKACSGLNNVRFGTLIHEAIM SMGFEVNVFVGSSLINFYVENGHVDRARPLFDKIPVRDCVLWNVMLNGYVKCEELDKA MEIFEEMRKGETKPDEVTFAAIFSLCASEGMVDFGTQLHGLVVCCGLEFDSVVANALL SMYSKCGWLSDAHKLFGMMPQADLVSWNGMISGYVQNGFMQDASCLFNEMISSGLKPD AITFSSFLPAVTGLGCFRKGKEIHGYILRHGVSLDVFLKSALIDVYFKCRDVEMARKV YNQRTEVDVVMCTAMISGYVLNGMNNDALEIFRWLLKEKIRPNAVTLASVLPACADLA ALKVGKELHGYIIKNGLDCGCHVGSAVIDMYAKCGRLDVTHDIFRRLSERDSVCWNSM ITSCSQNGKPEKAIDLFCWMGSTGMKYDCVSISAALSACANLPALHYGKEIHGFMIKG SFCSDPFAKSALIDMYAKCGNLGSSQHVFDMMEEKNEVSWNSIIAAYGNHGRLEDCLA LFHEMLKNEIQPDHVTFLAIISACGHAGKVDDGIHYFQSMTEEYGITARMEHYACVVD LFGRAGRLNEAFETIKSMPFSPDAGVWGTLLGACRNHGNVELAEFASRHLFDLDPQNS GYYVLLSNLLADAGHWGSVLKIRSLMKERGVQKVPGYSWIEVNNTTHMFVAADESHPR SSHIYSLLKTLLLELKREGYVPQLYLPMHPQHMVS" CDS complement(649889..652390) /locus_tag="TCM_026989" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene27128" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1" /protein_id="EOY25611.1" /db_xref="TAIR:AT4G21300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STE1" /translation="MYQRNLRSICKLIAPLTNVHTTTSQHIPRPSEFPTTQLASFLQS TSFPSNLQQGKQVHARLILNEITTTDPLLLAMYLRCGSFNDAKNMFYRIDLGCVKRWN LMIRGLVKMGWFHLGLLFYFKMLGCGVSPDNFTFPSVVKACSGLNNVRFGTLIHEAIM SMGFEVNVFVGSSLINFYVENGHVDRARPLFDKIPVRDCVLWNVMLNGYVKCEELDKA MEIFEEMRKGETKPDEVTFAAIFSLCASEGMVDFGTQLHGLVVCCGLEFDSVVANALL SMYSKCGWLSDAHKLFGMMPQADLVSWNGMISGYVQNGFMQDASCLFNEMISSGLKPD AITFSSFLPAVTGLGCFRKGKEIHGYILRHGVSLDVFLKSALIDVYFKCRDVEMARKV YNQRTEVDVVMCTAMISGYVLNGMNNDALEIFRWLLKEKIRPNAVTLASVLPACADLA ALKVGKELHGYIIKNGLDCGCHVGSAVIDMYAKCGRLDVTHDIFRRLSERDSVCWNSM ITSCSQNGKPEKAIDLFCWMGSTGMKYDCVSISAALSACANLPALHYGKEIHGFMIKG SFCSDPFAKSALIDMYAKCGNLGSSQHVFDMMEEKNEVSWNSIIAAYGNHGRLEDCLA LFHEMLKNEIQPDHVTFLAIISACGHAGKVDDGIHYFQSMTEEYGITARMEHYACVVD LFGRAGRLNEAFETIKSMPFSPDAGVWGTLLGACRNHGNVELAEFASRHLFDLDPQNS GYYVLLSNLLADAGHWGSVLKIRSLMKERGVQKVPGYSWIEVNNTTHMFVAADESHPR SSHIYSLLKTLLLELKREGYVPQLYLPMHPQHMVS" CDS complement(649889..652390) /locus_tag="TCM_026989" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene27128" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1" /protein_id="EOY25612.1" /db_xref="TAIR:AT4G21300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STE1" /translation="MYQRNLRSICKLIAPLTNVHTTTSQHIPRPSEFPTTQLASFLQS TSFPSNLQQGKQVHARLILNEITTTDPLLLAMYLRCGSFNDAKNMFYRIDLGCVKRWN LMIRGLVKMGWFHLGLLFYFKMLGCGVSPDNFTFPSVVKACSGLNNVRFGTLIHEAIM SMGFEVNVFVGSSLINFYVENGHVDRARPLFDKIPVRDCVLWNVMLNGYVKCEELDKA MEIFEEMRKGETKPDEVTFAAIFSLCASEGMVDFGTQLHGLVVCCGLEFDSVVANALL SMYSKCGWLSDAHKLFGMMPQADLVSWNGMISGYVQNGFMQDASCLFNEMISSGLKPD AITFSSFLPAVTGLGCFRKGKEIHGYILRHGVSLDVFLKSALIDVYFKCRDVEMARKV YNQRTEVDVVMCTAMISGYVLNGMNNDALEIFRWLLKEKIRPNAVTLASVLPACADLA ALKVGKELHGYIIKNGLDCGCHVGSAVIDMYAKCGRLDVTHDIFRRLSERDSVCWNSM ITSCSQNGKPEKAIDLFCWMGSTGMKYDCVSISAALSACANLPALHYGKEIHGFMIKG SFCSDPFAKSALIDMYAKCGNLGSSQHVFDMMEEKNEVSWNSIIAAYGNHGRLEDCLA LFHEMLKNEIQPDHVTFLAIISACGHAGKVDDGIHYFQSMTEEYGITARMEHYACVVD LFGRAGRLNEAFETIKSMPFSPDAGVWGTLLGACRNHGNVELAEFASRHLFDLDPQNS GYYVLLSNLLADAGHWGSVLKIRSLMKERGVQKVPGYSWIEVNNTTHMFVAADESHPR SSHIYSLLKTLLLELKREGYVPQLYLPMHPQHMVS" CDS complement(649889..652390) /locus_tag="TCM_026989" /note="encoded by transcript variant 5; alternatively spliced; dbxref frave:gene27128" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1" /protein_id="EOY25613.1" /db_xref="TAIR:AT4G21300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STE1" /translation="MYQRNLRSICKLIAPLTNVHTTTSQHIPRPSEFPTTQLASFLQS TSFPSNLQQGKQVHARLILNEITTTDPLLLAMYLRCGSFNDAKNMFYRIDLGCVKRWN LMIRGLVKMGWFHLGLLFYFKMLGCGVSPDNFTFPSVVKACSGLNNVRFGTLIHEAIM SMGFEVNVFVGSSLINFYVENGHVDRARPLFDKIPVRDCVLWNVMLNGYVKCEELDKA MEIFEEMRKGETKPDEVTFAAIFSLCASEGMVDFGTQLHGLVVCCGLEFDSVVANALL SMYSKCGWLSDAHKLFGMMPQADLVSWNGMISGYVQNGFMQDASCLFNEMISSGLKPD AITFSSFLPAVTGLGCFRKGKEIHGYILRHGVSLDVFLKSALIDVYFKCRDVEMARKV YNQRTEVDVVMCTAMISGYVLNGMNNDALEIFRWLLKEKIRPNAVTLASVLPACADLA ALKVGKELHGYIIKNGLDCGCHVGSAVIDMYAKCGRLDVTHDIFRRLSERDSVCWNSM ITSCSQNGKPEKAIDLFCWMGSTGMKYDCVSISAALSACANLPALHYGKEIHGFMIKG SFCSDPFAKSALIDMYAKCGNLGSSQHVFDMMEEKNEVSWNSIIAAYGNHGRLEDCLA LFHEMLKNEIQPDHVTFLAIISACGHAGKVDDGIHYFQSMTEEYGITARMEHYACVVD LFGRAGRLNEAFETIKSMPFSPDAGVWGTLLGACRNHGNVELAEFASRHLFDLDPQNS GYYVLLSNLLADAGHWGSVLKIRSLMKERGVQKVPGYSWIEVNNTTHMFVAADESHPR SSHIYSLLKTLLLELKREGYVPQLYLPMHPQHMVS" CDS complement(649889..652390) /locus_tag="TCM_026989" /note="encoded by transcript variant 6; alternatively spliced; dbxref frave:gene27128" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1" /protein_id="EOY25614.1" /db_xref="TAIR:AT4G21300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STE1" /translation="MYQRNLRSICKLIAPLTNVHTTTSQHIPRPSEFPTTQLASFLQS TSFPSNLQQGKQVHARLILNEITTTDPLLLAMYLRCGSFNDAKNMFYRIDLGCVKRWN LMIRGLVKMGWFHLGLLFYFKMLGCGVSPDNFTFPSVVKACSGLNNVRFGTLIHEAIM SMGFEVNVFVGSSLINFYVENGHVDRARPLFDKIPVRDCVLWNVMLNGYVKCEELDKA MEIFEEMRKGETKPDEVTFAAIFSLCASEGMVDFGTQLHGLVVCCGLEFDSVVANALL SMYSKCGWLSDAHKLFGMMPQADLVSWNGMISGYVQNGFMQDASCLFNEMISSGLKPD AITFSSFLPAVTGLGCFRKGKEIHGYILRHGVSLDVFLKSALIDVYFKCRDVEMARKV YNQRTEVDVVMCTAMISGYVLNGMNNDALEIFRWLLKEKIRPNAVTLASVLPACADLA ALKVGKELHGYIIKNGLDCGCHVGSAVIDMYAKCGRLDVTHDIFRRLSERDSVCWNSM ITSCSQNGKPEKAIDLFCWMGSTGMKYDCVSISAALSACANLPALHYGKEIHGFMIKG SFCSDPFAKSALIDMYAKCGNLGSSQHVFDMMEEKNEVSWNSIIAAYGNHGRLEDCLA LFHEMLKNEIQPDHVTFLAIISACGHAGKVDDGIHYFQSMTEEYGITARMEHYACVVD LFGRAGRLNEAFETIKSMPFSPDAGVWGTLLGACRNHGNVELAEFASRHLFDLDPQNS GYYVLLSNLLADAGHWGSVLKIRSLMKERGVQKVPGYSWIEVNNTTHMFVAADESHPR SSHIYSLLKTLLLELKREGYVPQLYLPMHPQHMVS" mobile_element 652664..652755 /note="source:CACAO_M_E69780_F2_scaffold_9 1560 1652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(652756..652794) /note="source:scaffold_4_CACTA_0482 7599 7717" /mobile_element_type="transposon:TIR/CACTA" mobile_element 653151..653600 /note="source:scaffold_7_CACTA_0795 2846 3319" /mobile_element_type="transposon:TIR/CACTA" gene complement(654906..656716) /locus_tag="TCM_026990" /note="dbxref CacaoGD:Thecc1EG026990" mRNA complement(654906..656716) /locus_tag="TCM_026990" /product="Cyclin F-box" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015901t1" /inference="similar to AA sequence:frave:gene04568" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(655288..656445) /locus_tag="TCM_026990" /note="dbxref frave:gene04568; paralog of Thecc1EG015901t1" /codon_start=1 /product="Cyclin F-box" /protein_id="EOY25615.1" /translation="MTDAEADWKNLPTLPLLLILDKLDVPSNPVRFGAVCKHWYFVFS NFLDLKRRSSPNMVPMLLIPTRMSNRVRQLCSLQIKTKFYNIELPESHSKRFCGSSHG WLAAVDKNMVITLLNPFKNGITIDLPEIAVNPKSASHQYDVHKVILSADPLSHSDSYV VVVIYGLRCRLAFYKSERKSWIYLDKGLTAFTDVIFYKNLAYAIGTRSLIVSFDVNDG FDDNLESPKVKILMPACRKVEDNIDSAYLVESSTGDLFSIKKEIDVEDYHPCAHFTKN FKVFKLVLDDQSGRLLEKEVKNMNGDVVFVGDNHTLAVSALDFPEGQPNSIYFTDDYY IATEYWPLGPRDIGFFNMKDGKVGKYYRFKPWHKYLPPYIWVQPPTEFVLR" gene 656994..668020 /locus_tag="TCM_026991" /note="dbxref CacaoGD:Thecc1EG026991" mRNA join(656994..657559,657666..657928,658343..658517, 658799..658882,659634..659875,660221..660458, 661264..661343,661418..661502,663150..663281, 663379..663492,663977..664024,664952..665036, 665670..665726,665821..666322,667988..668020) /locus_tag="TCM_026991" /product="AGC" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s16040.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020906t2" /inference="similar to AA sequence:Phytozome:GSVIVT01021759001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc955t5" CDS join(657708..657928,658343..658517,658799..658882, 659634..659875,660221..660458,661264..661343, 661418..661502,663150..663281,663379..663492, 663977..664024,664952..665036,665670..665726, 665821..665963) /locus_tag="TCM_026991" /note="paralog of Thecc1EG020906t2" /codon_start=1 /product="AGC" /protein_id="EOY25616.1" /db_xref="Phytozome:GSVIVT01021759001" /db_xref="TAIR:AT4G14350.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKH3" /translation="MDSARSWFKKFQQKNENSPKKKKEMENAKDAHKPPIDGPGAPST ATKQKAAAAKQYIENHYKSQMKNLQDRKERRWMLERKLADADITAEEQMSMLKFLEKK ETEYMRLQRHKMGVDDFELLTIIGRGAFGEVRLCKEKATGNVYAMKKLQKSEMLRRGQ VEHVKAERNLLAEVDSKCIVKLYCSFQDDEYLYLVMEYLPGGDMMTLLMRKDTLTEDE ARFYVGQTVLAIESIHKHNYIHRDIKPDNLLLDHNGHMKLSDFGLCKPLHSSSFPDLR EDDYGGGRNIKPSMESGKHSNLPPTPRRTQQEQLLHWQKNRRTLAYSTVGTPDYIAPE VLLKRGYGMECDWWSLGAIMFEMLVGYPPFYSEEPLSTCRKIVNWRTHLKFPEEAKLS AEAKDLIRKLLCNVERRLGTKGAHEIKAHPWFQDIEWDRLYQMEAAFIPEVNSELDTQ NFEKFEEMGAQVQTSTKSGPWRKMLPSKDANFVGYTYKNVEIVNEHHLSGIAELRKKS NAPKRPSVKSLFETPGPPDPPTKGTFLNLLPTQLEEPESPVPEHQSTRSTQYFRKPLQ R" mobile_element 665502..665571 /note="source:CACAO_M_S_E14850_F17_scaffold_2 4705 4770" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(672373..675634) /locus_tag="TCM_026992" /note="dbxref CacaoGD:Thecc1EG026992" mRNA complement(join(672373..673698,674141..674281, 675017..675634)) /locus_tag="TCM_026992" /product="WRKY DNA-binding protein 14, putative" /inference="alignment:exonerate-protein:2:frave:gene20152" /inference="similar to AA sequence:Phytozome:POPTR_0011s16050.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g191t2" CDS complement(join(673125..673698,674141..674281, 675017..675582)) /locus_tag="TCM_026992" /codon_start=1 /product="WRKY DNA-binding protein 14, putative" /protein_id="EOY25617.1" /db_xref="Phytozome:POPTR_0011s16050.1" /db_xref="TAIR:AT1G30650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0X2" /translation="MGCGSGHGASDVPASSWQQFPSASDPLNFASSAMEVDRVKAFGD PFSTMRDPLLHELNVAAAAGSTYFSSPTSTVNDTSNFPGASNTVGHDKIFEDDMRTST PCNIFSRIQISPSSSKLAVSPCDSPPLMAAAGGVGVGVGVSPRGIKAPAVLPSEMINA NSSKGCLIDNTGPLQISSPRNLGIKRRLGKSQAKKVVCIPAPAAANSRSSGEVVPSDL WAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWP TQRNALAGSTRSQPSKNNASSSKSSPSSQPLSSLNSKDELKESSSDALSPAVAASSTA SASVKEEFEDIEKQLDIDDAEFGEGMPQTYRPALPDSQAQSEDFFADLDEIEADPLNL LFPQGFTEEEQKENKAMDPFSLFDWSSGDNNASF" gene 682419..687370 /locus_tag="TCM_026994" /note="dbxref CacaoGD:Thecc1EG026994" mRNA join(682419..682857,683846..683998,684095..684188, 684369..684451,685036..685086,686270..686423, 686886..687342) /locus_tag="TCM_026994" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021771001" /inference="similar to AA sequence:Phytozome:GSVIVT01021771001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15422t1" mRNA join(682592..682857,683846..683998,684095..684188, 684369..684451,686270..686423,686886..687370) /locus_tag="TCM_026994" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021771001" /inference="similar to AA sequence:Phytozome:GSVIVT01021771001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01895t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15422t1" CDS join(682705..682857,683846..683998,684095..684188, 684369..684451,685036..685086,686270..686423, 686886..687121) /locus_tag="TCM_026994" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /protein_id="EOY25618.1" /db_xref="Phytozome:GSVIVT01021771001" /db_xref="TAIR:AT4G20760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q941A7" /translation="MVRVFLDTHRALMANPMRLRLRSFASSASALNWEGGVSMVQGAS RGIGLEFVKHLLEKNEKGHVIATCRNPNGATGLLELKNQFAERLNILPLDLTVESTIE ESAKSVTERYGSLNLLINASGILSIPNVLQPETTLSKLYKSSLMLAYEVNAVGPILVI KLGLIHRKVNALGNLAIPHMWPLLKAGGGFGTERDVAVVANLSARVGSIGDNRLGGWH SYRSSKAALNQLTKTISVEFARKKDPIACILLHPGTVDTDLSRPFQRNVRADKLFTKE FSVQKLLNIINNTKHQDNGKFFAWDGQEIPW" CDS join(682705..682857,683846..683998,684095..684188, 684369..684451,686270..686423,686886..687121) /locus_tag="TCM_026994" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /protein_id="EOY25619.1" /db_xref="Phytozome:GSVIVT01021771001" /db_xref="TAIR:AT4G20760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q941A7" /translation="MVRVFLDTHRALMANPMRLRLRSFASSASALNWEGGVSMVQGAS RGIGLEFVKHLLEKNEKGHVIATCRNPNGATGLLELKNQFAERLNILPLDLTVESTIE ESAKSVTERYGSLNLLINASGILSIPNVLQPETTLSKLYKSSLMLAYEVNAVGPILVI KHMWPLLKAGGGFGTERDVAVVANLSARVGSIGDNRLGGWHSYRSSKAALNQLTKTIS VEFARKKDPIACILLHPGTVDTDLSRPFQRNVRADKLFTKEFSVQKLLNIINNTKHQD NGKFFAWDGQEIPW" gene complement(687608..688112) /locus_tag="TCM_026996" /note="dbxref CacaoGD:Thecc1EG026996" mRNA complement(join(687608..687664,687771..688112)) /locus_tag="TCM_026996" /product="Non-specific lipid-transfer protein C, cotyledon-specific" /inference="alignment:exonerate- protein:2:ricco:27996.m000149.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026997t1" /inference="similar to AA sequence:ricco:27996.m000148" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15420t1" CDS complement(687824..688111) /locus_tag="TCM_026996" /note="dbxref ricco:27996.m000148; paralog of Thecc1EG026997t1" /codon_start=1 /product="Non-specific lipid-transfer protein C, cotyledon-specific" /protein_id="EOY25620.1" /translation="MKNLFFSMLLLLSFLFFLANHGEAAVPCNTVDAKAAQCVGFATG KATKPSAECCTGLQQLAQTVKSVDDKKAICRYLKAAAKSLGVQDKFLSNIP" gene 688555..689089 /locus_tag="TCM_026997" /note="dbxref CacaoGD:Thecc1EG026997" mRNA join(688555..688928,689034..689089) /locus_tag="TCM_026997" /product="Non-specific lipid-transfer protein C, cotyledon-specific" /inference="alignment:exonerate- protein:2:ricco:27996.m000149" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026996t1" /inference="similar to AA sequence:ricco:27996.m000149" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05688t00001_C2" CDS join(688591..688928,689034..689043) /locus_tag="TCM_026997" /note="dbxref ricco:27996.m000149; paralog of Thecc1EG026996t1" /codon_start=1 /product="Non-specific lipid-transfer protein C, cotyledon-specific" /protein_id="EOY25621.1" /translation="MKNLLFSMLLLSFLFFLANQGEAAVPCNTVDAKAAACVGFATGK ATKPSAECCTGLQQLAQTVKSVDDKKAICRCLKAAAKSLGIQDKFLSKIPQACNINVG FPVSINTNCETIH" mobile_element 689352..689419 /note="source:scaffold_4_CACTA_0482 17443 17511" /mobile_element_type="transposon:TIR/CACTA" gene complement(689424..695853) /locus_tag="TCM_026998" /note="dbxref CacaoGD:Thecc1EG026998" mRNA complement(join(689424..689680,690913..691671, 691792..691849,692493..692593,692968..693108, 693492..693620,694053..694157,694265..694366, 694471..694631,694758..694887,694996..695129, 695387..695853)) /locus_tag="TCM_026998" /product="GTP-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s41290.1" /inference="similar to AA sequence:Phytozome:Glyma13g35400.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc211t10" mRNA complement(join(691093..691671,691792..691850, 694052..694157,694265..694366,694471..694631, 694758..694887,694996..695129,695387..695736)) /locus_tag="TCM_026998" /product="GTP-binding family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s41290.1" /inference="similar to AA sequence:Phytozome:Glyma13g35400.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc76t22_C1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc211t10" mRNA complement(join(691097..691671,691792..691849, 692493..692594,693083..693108,693492..693620, 694053..694157,694265..694366,694471..694631, 694758..694887,694996..695129,695387..695736)) /locus_tag="TCM_026998" /product="GTP-binding family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s41290.1" /inference="similar to AA sequence:Phytozome:Glyma13g35400.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc207t9; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc211t10" mRNA complement(join(691097..691849,692493..692594, 693083..693108,693492..693620,694053..694157, 694265..694366,694471..694631,694758..694887, 694996..695129,695387..695736)) /locus_tag="TCM_026998" /product="GTP-binding family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s41290.1" /inference="similar to AA sequence:Phytozome:Glyma13g35400.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc207t5; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc211t10" CDS complement(join(691312..691671,691792..691849, 692493..692594,693083..693108,693492..693620, 694053..694157,694265..694366,694471..694631, 694758..694887,694996..695129,695387..695621)) /locus_tag="TCM_026998" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="GTP-binding family protein isoform 2" /protein_id="EOY25623.1" /db_xref="Phytozome:Glyma13g35400.1" /db_xref="TAIR:AT1G52980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8ITK3" /translation="MAKKNKEKKVNVSGKPKHSLDVNRSDGKNKDSRSAATVRRLKMY NTRPKRDSKGKILSHEFQSKELPNTRIQPDRRWFGNTRVVNQKELEFFREELQSRMSS NYNVILKEKKLPLSLLKDHSKQARAHLLDTQPFEDAFGPKTKRKRPKLLAADYESLVK KADGSQDVFEQKYGASTSAEAGEADGFRELVRHTMFEKGQSKRIWGELYKVIDSSDVV VQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKVWLRVLSKEYPT LAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFIGYPNVGKSSVINTLRTKNVC KVAPIPGVRVTNLEDAAEHIGEVLKRVKKEHLERAYKIKDWVDENDFLVQLCQSTGKL LKGGEPDLMTGAKMILHDWQRGRIPFFVAPPRQEADASLEEPTVHGIDKDAVADNNQA DAALKAIANVMLFQQQKSVPVKTDLFSENELVGEAGNQLPTTEMAGEVRASDDEVGGS SSDEP" CDS complement(join(691312..691671,691792..691849, 692493..692593,692968..693108,693492..693620, 694053..694157,694265..694366,694471..694631, 694758..694887,694996..695129,695387..695621)) /locus_tag="TCM_026998" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="GTP-binding family protein isoform 1" /protein_id="EOY25622.1" /db_xref="Phytozome:Glyma13g35400.1" /db_xref="TAIR:AT1G52980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8ITK3" /translation="MAKKNKEKKVNVSGKPKHSLDVNRSDGKNKDSRSAATVRRLKMY NTRPKRDSKGKILSHEFQSKELPNTRIQPDRRWFGNTRVVNQKELEFFREELQSRMSS NYNVILKEKKLPLSLLKDHSKQARAHLLDTQPFEDAFGPKTKRKRPKLLAADYESLVK KADGSQDVFEQKYGASTSAEAGEADGFRELVRHTMFEKGQSKRIWGELYKVIDSSDVV VQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKVWLRVLSKEYPT LAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFIGYPNVGKSSVINTLRTKNVC KVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNSDTETDIVLKGVVRVTNLEDAAEHI GEVLKRVKKEHLERAYKIKDWVDENDFLVQLCQSTGKLLKGGEPDLMTGAKMILHDWQ RGRIPFFVAPPRQEADASLEEPTVHGIDKDAVADNNQADAALKAIANVMLFQQQKSVP VKTDLFSENELVGEAGNQLPTTEMAGEVRASDDEVGGSSSDEP" CDS complement(join(691312..691671,691792..691850, 694052..694157,694265..694366,694471..694631, 694758..694887,694996..695129,695387..695621)) /locus_tag="TCM_026998" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="GTP-binding family protein isoform 4" /protein_id="EOY25625.1" /db_xref="Phytozome:Glyma13g35400.1" /db_xref="TAIR:AT1G52980.1" /translation="MAKKNKEKKVNVSGKPKHSLDVNRSDGKNKDSRSAATVRRLKMY NTRPKRDSKGKILSHEFQSKELPNTRIQPDRRWFGNTRVVNQKELEFFREELQSRMSS NYNVILKEKKLPLSLLKDHSKQARAHLLDTQPFEDAFGPKTKRKRPKLLAADYESLVK KADGSQDVFEQKYGASTSAEAGEADGFRELVRHTMFEKGQSKRIWGELYKVIDSSDVV VQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKVWLRVLSKEYPT LAFHASINKSFGKGVDENDFLVQLCQSTGKLLKGGEPDLMTGAKMILHDWQRGRIPFF VAPPRQEADASLEEPTVHGIDKDAVADNNQADAALKAIANVMLFQQQKSVPVKTDLFS ENELVGEAGNQLPTTEMAGEVRASDDEVGGSSSDEP" CDS complement(join(691714..691849,692493..692594, 693083..693108,693492..693620,694053..694157, 694265..694366,694471..694631,694758..694887, 694996..695129,695387..695621)) /locus_tag="TCM_026998" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="GTP-binding family protein isoform 3" /protein_id="EOY25624.1" /db_xref="Phytozome:Glyma13g35400.1" /db_xref="TAIR:AT1G52980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8ITK3" /translation="MAKKNKEKKVNVSGKPKHSLDVNRSDGKNKDSRSAATVRRLKMY NTRPKRDSKGKILSHEFQSKELPNTRIQPDRRWFGNTRVVNQKELEFFREELQSRMSS NYNVILKEKKLPLSLLKDHSKQARAHLLDTQPFEDAFGPKTKRKRPKLLAADYESLVK KADGSQDVFEQKYGASTSAEAGEADGFRELVRHTMFEKGQSKRIWGELYKVIDSSDVV VQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKVWLRVLSKEYPT LAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFIGYPNVGKSSVINTLRTKNVC KVAPIPGVRVTNLEDAAEHIGEVLKRVKKEHLERAYKIKDWVDENDFLVQLCQSTGKL LKVCVNFGFKPHLVFNCIIQRESKFKL" gene 696037..729223 /locus_tag="TCM_027000" /note="dbxref CacaoGD:Thecc1EG027000" mRNA join(696037..696335,696433..696577,698196..698254, 704221..704340,704825..704926,705897..705951, 708659..708756,709872..710288) /locus_tag="TCM_027000" /product="Methyltransferases isoform 1" /inference="alignment:exonerate- protein:2:ricco:27996.m000151" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027003t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s16080.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03925t00001" CDS join(696057..696335,696433..696577,698196..698254, 704221..704340,704825..704926,705897..705951, 708659..708756,709872..709997) /locus_tag="TCM_027000" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG027003t1" /codon_start=1 /product="Methyltransferases isoform 1" /protein_id="EOY25626.1" /db_xref="Phytozome:POPTR_0011s16080.1" /db_xref="TAIR:AT5G44450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0X5" /translation="MWKGPISKAVSPQTLQQCPVTLILQPPPNPKPPRKNYKTPKARR TVMEAAGFDSDGREFKNAQEMWREQIGEADEGENHKKTQWYSEGVAYWEGVEASVDGV LGGFGQVNEADIKGSEVFLNTLLHERFDGGGRNQHLVALDCGSGIGRITKNLLIRYFN EVDLLEPVSHFLDAARESLSQEYFVSSDAHKATNFYCVSLQEFTPDAGRYNVIWIQWC IGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARNGFVLDKEDRSITRSDLYFKDLFR RCGLHLYKIKDQKGLPEELFAVKMYALTTEGPNKVLKTRSKAQANRPGIIK" mRNA join(696088..696335,696433..696494,704259..704340, 704825..704926,705897..705951,708659..708756, 709872..710032,729140..729223) /locus_tag="TCM_027000" /product="Methyltransferases isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400026521.2" /inference="alignment:exonerate- protein:2:ricco:27996.m000151" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027003t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s16080.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc48t91; inference alignment:Newbler:10:TSA:cgbaP1_g03925t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc7557t1" CDS join(696195..696335,696433..696494,704259..704340, 704825..704926,705897..705951,708659..708756, 709872..709997) /locus_tag="TCM_027000" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG027003t1" /codon_start=1 /product="Methyltransferases isoform 2" /protein_id="EOY25627.1" /db_xref="Phytozome:POPTR_0011s16080.1" /db_xref="TAIR:AT5G44450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0X5" /translation="MEAAGFDSDGREFKNAQEMWREQIGEADEGENHKKTQWYSEGVA YWEGVEASVDGVLGGFGQVNEADIARESLSQEYFVSSDAHKATNFYCVSLQEFTPDAG RYNVIWIQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARNGFVLDKEDRSITR SDLYFKDLFRRCGLHLYKIKDQKGLPEELFAVKMYALTTEGPNKVLKTRSKAQANRPG IIK" mobile_element complement(698433..698926) /note="source:CACAO_Again_on_E207_scaffold_9 1326 1851" /mobile_element_type="transposon:TIR/hAT" mobile_element 698439..698812 /note="source:CACAO_Again_on_E210_scaffold_9 18 378" /mobile_element_type="transposon:TIR/hAT" mobile_element 698805..699118 /note="source:CACAO_hAT_E2399_scaffold_5 532 838" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(698813..699128) /note="source:scaffold_5_CACTA_0599 1 571" /mobile_element_type="transposon:TIR/CACTA" mobile_element 702636..703865 /note="source:CACAO_Again_on_E210_scaffold_9 584 1819" /mobile_element_type="transposon:TIR/hAT" gene 704908..806207 /locus_tag="TCM_027002" /note="dbxref CacaoGD:Thecc1EG027002" mRNA join(704908..704926,708659..708695,710949..711166, 711737..712013,712155..712223,713018..714076, 714772..714906,715031..715152,715242..715611, 805998..806207) /locus_tag="TCM_027002" /product="Cysteine/Histidine-rich C1 domain family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s12110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027015t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00068t00006; inference alignment:Newbler:10:TSA:cgbaL_g00068t00006; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1014t30" gene complement(706691..727435) /locus_tag="TCM_027001" /note="dbxref CacaoGD:Thecc1EG027001" mRNA complement(join(706691..706977,726786..727435)) /locus_tag="TCM_027001" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.47 coverage" CDS complement(join(706851..706977,726786..726874)) /locus_tag="TCM_027001" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25631.1" /translation="MELNEIFHSLKQNSMSIEEYTSGFNNLSLGVGLKESNEQLTSCY LAGLNQSITDEMGVTCLFNLKMLDNWP" mRNA join(710337..710920,711002..712013,712155..712223, 713018..714076,714772..714906,715031..715152, 715242..716400) /locus_tag="TCM_027002" /product="Cysteine/Histidine-rich C1 domain family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s12110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027025t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00068t00006" mRNA join(710437..712013,712155..712223,713024..714076, 714772..714906,715031..715152,715242..716324) /locus_tag="TCM_027002" /product="Cysteine/Histidine-rich C1 domain family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s12110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027025t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g852t2; inference alignment:Newbler:10:TSA:cgbaL_g00068t00006; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1014t30" CDS join(710949..712013,712155..712223,713024..714076, 714772..714906,715031..715152,715242..715611) /locus_tag="TCM_027002" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG027025t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein isoform 3" /protein_id="EOY25630.1" /db_xref="Phytozome:POPTR_0019s03690.1" /db_xref="TAIR:AT2G21840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="MDIKPYLHEHHLLYDDYSESKALCNICNKKMDGLSYYCERCEFW LHNSCVHQQLPLQISAHPLHSQHNLSLLWSNHIDYVCAKCFNLSRGHRYHCKDCDFSL EYQCAFSTNDEKNRLSDETSKKIGRFNKSLALFNYRRVRKYEHICSWCENHLSGMSYG CLNDGVYIWFHESCLINMPSIIFKHPFHPLHPLPLSNIHFDNELCNACNLPIWEFRKA YCCRKCKFLLHVHCAKLRPSLKVELHEHDLTYFRIKANIATHLCRICGFNFDALGRES AFYRCVQCNFNYHFNCLTISHSTSHKYHRHDLVLMDSFIEDVSEEYYCDICEEERKPK HSVYCCKKCKFIAHIECALKKVVDIKLDQCLTSSLLDSEASSLKIEHFDHQHALSYNE SIEQSESLLCNACHQEVFDQHYACEDCKYNLHEKCTTLPYEVSHPLHCQHPLKLFTDI VEFTCHACRDHSGGFAYMCLPCDFQLDVKCATSPIPPKNEGQKLKEMEKVFKLCPFNQ NHKLDFFNRRSNLKDLAVECNACKLPILGPGYTCRDCFNIKIHESCLALMREMQLNFH PLHPLDPQIGDWENCSACRFKIIESIDYSCRQCDFHLHLHCANSLKLALKIKSHMHNL YYFGPDYEKSYQLCNKCKSYIGKEPFYYCVECNMNLHLKCVPIPCSVKSKCHMHRLTL KDHFVEDDSGEYYCDICEEERNSKNHCYYCEECAGQFVAHIECALLTDFEFTDENFHE FFNLKDVDSPIESSSTDELLSQPHAEVYLNQNRMKYWVDKKLNKYCFMLFARDLSITW AENHRYWRWSYQRETNSDVLIDVAELLDVCWLEMNVKFNVKKLSPKTLYGLVFVLMLT KEARGWETPVNFGFTLPNGYKVERKETLKSKPRGVWIEIPVGEFTTSSEIVGELDIYC HEYATGNWKRGLIVKGVTILPKN" CDS join(710949..711166,711737..712013,712155..712223, 713018..714076,714772..714906,715031..715152, 715242..715611) /locus_tag="TCM_027002" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG027015t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein isoform 2" /protein_id="EOY25629.1" /db_xref="Phytozome:POPTR_0019s03690.1" /db_xref="TAIR:AT2G21840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="MDIKPYLHEHHLLYDDYSESKALCNICNKKMDGLSYYCERCEFW LHNSCVHQQLPLQISAHPLHSQHNLSLLWICGFNFDALGRESAFYRCVQCNFNYHFNC LTISHSTSHKYHRHDLVLMDSFIEDVSEEYYCDICEEERKPKHSVYCCKKCKFIAHIE CALKKVVDIKLDQCLTSSLLDSEASSLKVQIEHFDHQHALSYNESIEQSESLLCNACH QEVFDQHYACEDCKYNLHEKCTTLPYEVSHPLHCQHPLKLFTDIVEFTCHACRDHSGG FAYMCLPCDFQLDVKCATSPIPPKNEGQKLKEMEKVFKLCPFNQNHKLDFFNRRSNLK DLAVECNACKLPILGPGYTCRDCFNIKIHESCLALMREMQLNFHPLHPLDPQIGDWEN CSACRFKIIESIDYSCRQCDFHLHLHCANSLKLALKIKSHMHNLYYFGPDYEKSYQLC NKCKSYIGKEPFYYCVECNMNLHLKCVPIPCSVKSKCHMHRLTLKDHFVEDDSGEYYC DICEEERNSKNHCYYCEECAGQFVAHIECALLTDFEFTDENFHEFFNLKDVDSPIESS STDELLSQPHAEVYLNQNRMKYWVDKKLNKYCFMLFARDLSITWAENHRYWRWSYQRE TNSDVLIDVAELLDVCWLEMNVKFNVKKLSPKTLYGLVFVLMLTKEARGWETPVNFGF TLPNGYKVERKETLKSKPRGVWIEIPVGEFTTSSEIVGELDIYCHEYATGNWKRGLIV KGVTILPKN" CDS join(711039..712013,712155..712223,713018..714076, 714772..714906,715031..715152,715242..715611) /locus_tag="TCM_027002" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG027025t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein isoform 1" /protein_id="EOY25628.1" /db_xref="Phytozome:POPTR_0019s03690.1" /db_xref="TAIR:AT2G21840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="MDGLSYYCERCEFWLHNSCVHQQLPLQISAHPLHSQHNLSLLWS NHIDYVCAKCFNLSRGHRYHCKDCDFSLEYQCAFSTNDEKNRLSDETSKKIGRFNKSL ALFNYRRVRKYEHICSWCENHLSGMSYGCLNDGVYIWFHESCLINMPSIIFKHPFHPL HPLPLSNIHFDNELCNACNLPIWEFRKAYCCRKCKFLLHVHCAKLRPSLKVELHEHDL TYFRIKANIATHLCRICGFNFDALGRESAFYRCVQCNFNYHFNCLTISHSTSHKYHRH DLVLMDSFIEDVSEEYYCDICEEERKPKHSVYCCKKCKFIAHIECALKKVVDIKLDQC LTSSLLDSEASSLKVQIEHFDHQHALSYNESIEQSESLLCNACHQEVFDQHYACEDCK YNLHEKCTTLPYEVSHPLHCQHPLKLFTDIVEFTCHACRDHSGGFAYMCLPCDFQLDV KCATSPIPPKNEGQKLKEMEKVFKLCPFNQNHKLDFFNRRSNLKDLAVECNACKLPIL GPGYTCRDCFNIKIHESCLALMREMQLNFHPLHPLDPQIGDWENCSACRFKIIESIDY SCRQCDFHLHLHCANSLKLALKIKSHMHNLYYFGPDYEKSYQLCNKCKSYIGKEPFYY CVECNMNLHLKCVPIPCSVKSKCHMHRLTLKDHFVEDDSGEYYCDICEEERNSKNHCY YCEECAGQFVAHIECALLTDFEFTDENFHEFFNLKDVDSPIESSSTDELLSQPHAEVY LNQNRMKYWVDKKLNKYCFMLFARDLSITWAENHRYWRWSYQRETNSDVLIDVAELLD VCWLEMNVKFNVKKLSPKTLYGLVFVLMLTKEARGWETPVNFGFTLPNGYKVERKETL KSKPRGVWIEIPVGEFTTSSEIVGELDIYCHEYATGNWKRGLIVKGVTILPKN" mobile_element 714427..714689 /note="source:scaffold_4_CACTA_0509 575 885" /mobile_element_type="transposon:TIR/CACTA" gene 718818..735621 /locus_tag="TCM_027003" /note="dbxref CacaoGD:Thecc1EG027003" mRNA join(718818..719336,719518..720099,720197..720341, 723705..723793,723892..724011,724639..724740, 725717..725771,731188..731306,731435..731503, 732282..732768,733165..733340,734033..734167, 734291..734412,734498..735621) /locus_tag="TCM_027003" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate- protein:2:ricco:27996.m000151.2" /inference="similar to AA sequence:Phytozome:POPTR_0011s16080.1" /note="quality class is strong, express is medium, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS join(719839..720099,720197..720341,723705..723793, 723892..724011,724639..724740,725717..725771, 731188..731306,731435..731503,732282..732768, 733165..733340,734033..734167,734291..734412, 734498..734867) /locus_tag="TCM_027003" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY25632.1" /db_xref="Phytozome:POPTR_0011s16080.1" /db_xref="TAIR:AT5G44450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0X5" /translation="MWMRPISQAVSPQTLQQCPITLVLHPPRKNYKTPKERRTAMEAA GSDSDGREFKNPQEMWREQIGDADEGDNHKKTQWYREGVAYWEGVEASVDGVLGGFGQ VNEADVKGSEVFLNTLLHERFDGGGRNHHLVALGSGSGYSRIVPEPDTGSEITIRTRL KRDYRVDLLEPVSHFLDAARESLSQEYFVASDAHKASNFYCVPLQEFTPDAGRYNVIW IQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARNEDVYEEYYCDICEEKRKPK HSVYCCKKCKFVAHIECVLNKVIDIKLDQSVTSSLLDGEASTLKAQIEHFDHQHPLSY NGAIERNESLLCNACCQEIFDQHYACGDCKYYLHETCTALPFEVSHPFHCQHPLKLFT DIVEFTCHACREHSSGFAYMCIPCDFQLDVNCATTPIPQKNEGQKLKEMEKVSKLCPF NQNHKLDFFNRRSSLKDLALECDACKLPILGPVKSKYHMHRLTLKNHFVEDDSGEYYC DICEEERNSKNHCYYCEECVGQFVAHIECVLLTDFEFADGNFHEFSNLKDADSPIESS SMDKLLSQPHAEVYLNQNRMKYWVDKKLGKYCFMLFARDLSICWAENHLYWRWSYQRE TNSDVLIDVVELLDVWWLEMHVKFNVKKLSPKTLYGLVFVLMLAKEACGWEHPVNFGF TLPNGYKVECKEILMTKPTGVWIEIPVGEFTTSIEIAGELDIYCHQYDELIRKRGLVV KGVTILPKN" mobile_element 722185..722559 /note="source:CACAO_Again_on_E210_scaffold_9 12 378" /mobile_element_type="transposon:TIR/hAT" mobile_element 722553..723796 /note="source:CACAO_Again_on_E210_scaffold_9 533 1888" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(722560..722810) /note="source:scaffold_5_CACTA_0599 1 577" /mobile_element_type="transposon:TIR/CACTA" gene 723462..800760 /locus_tag="TCM_027005" /note="dbxref CacaoGD:Thecc1EG027005" mRNA join(723462..723679,723853..724011,798256..798598, 799613..799719,800354..800760) /locus_tag="TCM_027005" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:27996.m000151.2" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g879t3" CDS join(723668..723679,723853..724011,798256..798598, 799613..799719,800354..800479) /locus_tag="TCM_027005" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25633.1" /translation="MGTHLCFLTPLPFTILQVDLLEPVSHFLDAARESLSQEYFVASD AHKASNFYCVPLQSSTLILTPPPFKSRHVTISLPIYHKQHYLLVEHYERGFHPLHIQF HPQDHLPVNRKGLYCLVDSPYRLPLVPVTLNLAQPATNLQSYPSTQPVLFAGLDFFST SANKSSTTISHGFVLDKEDRSITRSDLYFKDLFRRCGLHLYKIKVMADQKGLPEELFA VKMYALTTEGPKKVLKTRSKAQANRPGIIK" mobile_element complement(748128..749846) /note="source:CACAO_M_E33977_F20_scaffold_4 14823 16541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(749584..752405) /note="source:scaffold_9_CACTA_0922 4921 7253" /mobile_element_type="transposon:TIR/CACTA" gene 750470..755593 /locus_tag="TCM_027008" /note="dbxref CacaoGD:Thecc1EG027008" mRNA join(750470..750710,750882..750979,751099..751251, 751353..751505,751634..751867,751961..752013, 752093..752111,752249..752320,752405..752584, 753023..753489,753681..753759,753886..754261, 755469..755593) /locus_tag="TCM_027008" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032598t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1511t1" CDS join(751431..751505,751634..751867,751961..752013, 752093..752111,752249..752320,752405..752584, 753023..753489,753681..753759,753886..754239) /locus_tag="TCM_027008" /note="paralog of Thecc1EG032598t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25634.1" /translation="MCRWDCNQKPKDFYKTIQKLESSDQALREYFVDLDVPLSEGNEY VPIGHMEDRSAWGLGARLKKKSLKEKRASSGTKRMRTAAALVDELMDEGDDHGQGSEQ LLQNHPPVFLRCRVETTCRLRKRRQYAEATIGPEAPIGPTPPQTANELPLTQSRTVND GAVTTRQLRWIMRKHEKDMLELKASIQSLSVAMQTIEDHIVGRILDGLKSQGDPSHSA GLEHDDADDGQHHELGVDIDDDVLGVDGEHVTHVDDVVEEAVAVDVTLQSDAEGEHLP PAYAFIDAAAGAIVHYRESTPDTVEIRLSSPESFAVHHGAAKVSDPTERARLKMVNKY MASPFVDPLVTRRNVRDKIGEDYEAFKKEESASLLCKRMTGPKSKLYTARACMVDTIF SMPKLKCKFDELRGYVEGERPTYAKKWKDVDFIIVPCNVGGHWVVAKIDLVRWTIKVV DEAITSNVKDNRVRAGQMTPLTTMMPLICHQAGYFNNIRRKRRDLTPMPLDIHLPKTK VH" mobile_element complement(751856..753194) /note="source:CACAO_Mutator_E1012_scaffold_5 4045 7093" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(753195..754853) /note="source:scaffold_9_CACTA_0922 2219 3879" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(754653..759420) /note="source:CACAO_M_E33977_F20_scaffold_4 5406 10135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 757071..759715 /note="source:CACAO_Mutator_E39_scaffold_1 1401 4105" /mobile_element_type="transposon:TIR/Mutator" mobile_element 760930..761309 /note="source:CACAO_Again_on_E210_scaffold_9 12 378" /mobile_element_type="transposon:TIR/hAT" mobile_element 761302..761553 /note="source:CACAO_hAT_E2399_scaffold_5 532 895" /mobile_element_type="transposon:TIR/hAT" mobile_element 766303..766544 /note="source:CACAO_Again_on_E210_scaffold_9 12 241" /mobile_element_type="transposon:TIR/hAT" mobile_element 766814..768345 /note="source:CACAO_Again_on_E210_scaffold_9 426 1957" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(768398..769196) /note="source:CACAO_on_E35_scaffold_5 1 798" /mobile_element_type="transposon:TIR/hAT" gene 769686..797481 /locus_tag="TCM_027011" /note="dbxref CacaoGD:Thecc1EG027011" mRNA join(769686..769803,773463..773752,773912..774008, 774101..774435,775212..775340,778955..778963, 790295..790402,795892..795990,796856..797481) /locus_tag="TCM_027011" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.19 coverage" CDS join(773622..773752,773912..774008,774101..774435, 775212..775340,778955..778963,790295..790373) /locus_tag="TCM_027011" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25635.1" /translation="MRGWGGRDKSPKIIRRKIRKEVSGGMQALFWRSGLMTGKFRQVR KNPEVVTSYPIDQGFMNWIQLQMLSVKLVWKWFSNLVLESAQCIPCLITQDIIHLGQF SLDCLNFIYSFTGNHLSFYCGHYGLWLISSDGPLVHSTWSSFVHFKSAPLACVLILTV TNYTISPKYTIVYAALEWTLPRKSANTRNKANERCKLLCFVDLVYINHQMKIIFSSLP WSLAGLEIRYTQVDLPLKNYFHISSAAKMLYLANILELVIF" mobile_element 774052..774925 /note="source:CACAO_M_S_E16683_F28_scaffold_2 10852 11728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 777218..777846 /note="source:CACAO_MITE_S123_scaffold_5 136 770" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(777870..778101) /note="source:CACAO_Mariner_E176_scaffold_6 8627 8863" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 780153..780545 /locus_tag="TCM_027012" /note="dbxref CacaoGD:Thecc1EG027012" mRNA join(780153..780337,780476..780545) /locus_tag="TCM_027012" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g904t1" CDS join(780222..780337,780476..780542) /locus_tag="TCM_027012" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25636.1" /translation="MFLKNIIVIYVKKKENPSTVFIVARNANLLLTSNVHSIRLWIRN LIKVRPLVCWIVKLQH" gene 782240..783912 /locus_tag="TCM_027013" /note="dbxref CacaoGD:Thecc1EG027013" mRNA join(782240..782392,783100..783234,783358..783479, 783569..783602,783694..783912) /locus_tag="TCM_027013" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s12110.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027002t2" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g909t2" CDS join(783178..783234,783358..783479,783569..783602, 783694..783723) /locus_tag="TCM_027013" /note="paralog of Thecc1EG027002t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25637.1" /translation="MDKLLSQPHAEVYLNQNRMKYWVNKKLNKYCFMLFARDLSISWV EEHRYWRWSYQKETNSDVLIDVVELLKMKHMDGDVQ" gene 788430..789646 /locus_tag="TCM_027014" /note="dbxref CacaoGD:Thecc1EG027014" mRNA 788430..789646 /locus_tag="TCM_027014" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.29 coverage" CDS 789410..789625 /locus_tag="TCM_027014" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25638.1" /translation="MRQISRVVRFFSIPFCMRDSMAVEEITILLLLVLLFLSLCAQLY IVFMKLYTHICSVEVVWFMLLLLFFLH" mobile_element 791317..791694 /note="source:CACAO_Again_on_E210_scaffold_9 12 378" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(791323..791808) /note="source:CACAO_Again_on_E207_scaffold_9 1326 1845" /mobile_element_type="transposon:TIR/hAT" mobile_element 791687..791856 /note="source:CACAO_hAT_E2399_scaffold_5 532 700" /mobile_element_type="transposon:TIR/hAT" mobile_element 791961..792378 /note="source:CACAO_Again_on_E210_scaffold_9 512 952" /mobile_element_type="transposon:TIR/hAT" mobile_element 792379..792743 /note="source:INTACT473_F7_scaffold_3-int 1 377" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 793310..795079 /note="source:INTACT473_F7_scaffold_3-int 7460 8809" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 795080..795895 /note="source:CACAO_Again_on_E210_scaffold_9 948 1757" /mobile_element_type="transposon:TIR/hAT" gene 800820..806883 /locus_tag="TCM_027015" /note="dbxref CacaoGD:Thecc1EG027015" mRNA join(800820..801165,801542..801756,802315..802591, 802734..802802,803593..804651,805161..805295, 805420..805541,805628..806883) /locus_tag="TCM_027015" /product="Cysteine/Histidine-rich C1 domain family protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g005330.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027002t2" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00068t00011" CDS join(801542..801756,802315..802591,802734..802802, 803593..804651,805161..805295,805420..805541, 805628..805997) /locus_tag="TCM_027015" /note="paralog of Thecc1EG027002t2" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein" /protein_id="EOY25639.1" /db_xref="Phytozome:POPTR_0019s03690.1" /db_xref="TAIR:AT4G19840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="MDIKPFLHEHHLLYDDYDGSEALCNICNQKVRGMAYCCERCKFS LHDSCAHQQLPPQISDPCHLQHNLTLERICGFDFDASGDESAFYRCVHCNFNYHFECL TIPHSTSHKYHRHDLMLMDSFIEDVSEEYYCDICEEERKPKHSVFCCKKCKFVAHIEC ALNKVVDTKLDQSLTFSLLDNKASTSKVQIEHFDHQHPLSYNETIEQNESLLCNACRQ EIFYQHYACEDCKYYLHETCTTLPYEVSHPLHCQHLLKLFTDIVEFTCHGCREHSGGF AYMCLPCDFQLDVKCATTPIPPQNERQKLKEMEKVSKLCPFNQNHKLDFFNRRLNFKD LVLECDACKLPILGPGYTCRDCFNIKIHESCLALMREMQHTFHLLHPLHPQIGDWENC SACRFKIIESIGYSCRQCDFHLHLHCANSLKLALKIKSHMHNLYYFGPDYEKSYQLCN KCKSYIGKEPFYYCVECNMNLHLKCVPIPCSIKSKCHMHWLTLKNHFVEDDSGEYYCD ICEEERNSKNHCYYCEECAGQFVAHIECVFLKDFEFTNGNFHEISNLKDVDSPIECSF MDKLLSQPHAEVYLNQNRMKYWVDKKLNKYCFMLFARNLTITWSEDHRYWHWSYQRET NSDLLINVVELLDVCWLEMHVKFNVKKLSPKTLYGLVFVLMLTKEAYGWEHLVNFGFT LPNGYKVEHKESLKSKPRGEWIEIIVGEFTTSSEIVGELDIYCHEYDVLFWKRGLIVK GVAILPKN" gene 806087..837193 /locus_tag="TCM_027016" /note="dbxref CacaoGD:Thecc1EG027016" mRNA join(806087..806153,818331..821297,821935..822122, 824764..824860,825990..826061,829450..830508, 831218..831367,831477..831547,831688..832217, 837066..837193) /locus_tag="TCM_027016" /product="Cysteine/Histidine-rich C1 domain family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s03840.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s15350.1" /note="quality class is medium, express is medium, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc4390t1" mobile_element complement(807519..807531) /note="source:INTACT453_F4_scaffold_9-int 14182 14199" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 807532..807602 /note="source:CACAO_M_E69509_F328_scaffold_9 1 69" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(807569..808406) /note="source:CACAO_M_E50672_F328_scaffold_7 2206 3051" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(807603..807633) /note="source:scaffold_8_CACTA_0865 2872 2965" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(813451..814493) /note="source:CACAO_M_E44899_F328_scaffold_6 1 1056" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 816204..816385 /note="source:CACAO_on_S_E390_scaffold_9 2172 2354" /mobile_element_type="transposon:TIR/Mutator" CDS join(818433..821297,821935..822122,824764..824860, 825990..826061,829450..830508,831218..831367, 831477..831547,831688..832057) /locus_tag="TCM_027016" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein" /protein_id="EOY25640.1" /db_xref="Phytozome:POPTR_0015s15350.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICN9" /translation="MAKALLSMILEQLGGSFIPQEIKHHIGLAVGLKEEIQKLTSHFE AIQAVLEDAERKQVKEASVRHWLSKLKNVSYDVEDVLDEWNTAKLKSKLEKEERATEH ASLPRKVCYSFSFSSSQIILQHNIAQKIKELNGQLDFISAEKDRYKFELWRGIHEESE RQITTSFIDVTDVYGRDQDKNAVLNMLLEENSEKDSTLQIITIVGMGGVGKTTLARLA YNDNIVDTHFEKKIWVCVSDPFDGIKIAKAILESLGDAVPNFVELQTLLQRIRKSVVG KRFLLVLDDVWNEDDWKWKPFKDSLSCGSLGSKILMTTRKENVAVAMGCTTLFPLGKL AKEECWLLFSRVAFFGRTSRECQMLEDFGRKIADKCQGLPLAVKTLGGLMRSKRTIEQ WQSVLNSEIWELKEAERGIFPPLLLSYYDLSPALKQCFSYCAIFPKDYVIEKDRLIKL WMAQGFLKEKQIKDMEILGQEYFEDLAMCSFFQDFEKDGDGNINKCKMHDLVHDLAQF LTKGECFMVEVYGVEQPRVDTYSEKGRHLMLALGEKVIFPTYIYNVKKLRSLLVEPIN FYASIMSESLPKLCKQLTCLRTLDLSTKYHTIFGSTITEIPKEIAKLIHLRYLNISNN DDLEELPEALCELINLQTLDLSFCKKLKRLPNGIGKLVNLRHLKNYGTWRVRFMPKGM EKLTSLRTLREFPLSEGGTSCETSSIGELGSLTHLGDYLEIRGLGNVRDVNEARKANL RSKECLFNLLLKFDMDENKSGGGLPNGDALVLEALQPPPYLECLEIHNYRGSSTLPKW MLALTNLRHLAVCSCRNWERLPPLGKLPSLESLWIYDIRRVKKVGVEFLGIERDEGQG SSSSTVIPFPNLKRLEIHDMNELEEWEYGEFHFLGKGKEQISIMPCLSFLVIDRCPRL KALPHHLQNSSIETLEIRWCSILETGCIISRIPNIRINYMEQSDEENPAMEESTEAQQ SYEENLTMKESTEEQQTDRENLAMGESIEEQQTDEENPSMEEPTEKICWDKEDRSITR SNLYFKDLFRRYGLHLYKIKDQKGLPEELFAVKMYALTTEVPKKVHIEHFDHQHPLSY NEAIEQNESLLCNGCCQEIFDQYYACEDCKYYLHGTCTTLSYEVSHPLHCQHPLKLFT DKVEFICHGCRDHSNGFAYMCLPCDFQLDVKCATTPIPPQNERQKLKEMEKVSKLCLF NQNHKLDFFNRRPNLKDLALECDACKLPILGPGYTCRDCFDIKIHESCLALMREMQLT IDPLHTLHPQIGDWENRSTCGFKIIESIGYSCRQCDFHLHLHCANSLKLALKVKSHMH NLYYFEPYYEKSYYFCNKCKSYIGEEPFYYCVECNMNLHLKCVPIPCSVESKCHMHRL TLKDHFVEDDSGEYYCDICEEERNSKNHCYYCEECAGQFVAHIECVLLTNFEFTDGNF HEFSNLKVVDSPVESSSMDKLLSQPHAEVYLNQNRMVVKSDKYWVDKKLSKYCFMLFA RDLTITCDVLINVAKLLKVCWLEMHVKFNVKKLSLETLYGVVFVLKLTDEAYGWEYPV KFGVTLPNGYKVECEDYLMTKPRGVWIKIFVGEFTTSSKNIGELNIYCRGYYGGRWKG GLIVKGVAILPKN" gene 832128..860068 /locus_tag="TCM_027018" /note="dbxref CacaoGD:Thecc1EG027018" mRNA join(832128..832259,853388..854669,854786..854875, 855912..856991,859976..860068) /locus_tag="TCM_027018" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT2G21840.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027024t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2301t3" gene complement(836866..854295) /locus_tag="TCM_027019" /note="dbxref CacaoGD:Thecc1EG027019" mRNA complement(join(836866..837242,853440..854295)) /locus_tag="TCM_027019" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.58 coverage" mobile_element complement(837127..839592) /note="source:CACAO_M_S_E64654_F231_scaffold_5 1 2418" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 844142..845588 /note="source:CACAO_M_E36574_F4_scaffold_5 2197 3651" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 847912..848132 /note="source:scaffold_5_CACTA_0607 11527 11755" /mobile_element_type="transposon:TIR/CACTA" mobile_element 849123..849276 /note="source:CACAO_M_E36574_F4_scaffold_5 1642 1805" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 852334..852397 /note="source:CACAO_M_E36574_F4_scaffold_5 11210 11274" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(853575..853802) /locus_tag="TCM_027019" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25642.1" /translation="MLGMEGMCTYLRRQLFFSARLVQPKLASSTRIGDIINFSIAFIT TRLLFLIIMKEQVVFMKERFDIHLKERKNFR" CDS join(853602..854669,854786..854875,855912..856991, 859976..860035) /locus_tag="TCM_027018" /note="paralog of Thecc1EG027024t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY25641.1" /db_xref="Phytozome:POPTR_0019s03690.1" /db_xref="TAIR:AT2G21840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="MDIKPFLHEHYLLLHYYEEQEACCDKCNRKIDDIAYSCGRCKFW LHKSCAEEQLPPQISAHPLHSQHNLTLFFHWSCYICAKCSNLSQGHAYYCRDCDFNLD YLCAFSTNAENNRPIINGHISKKIHHFSFNEPLTLFNYRRVGKYDYYCNWCEKHLFGM SYGKLGFSNQVSFHDSCLINMPGIIVKHPFHPSHPLQIHMVYSDYRCNACNYSLKGIQ AYCCKKCRFYLHVLCARLQPSLKVELHEHPLTYFQIQSGWRGFRCKICNFNCGARNKE SFCYRCVQCNFNYHFNCLGILSSTRHKYHRHELMLIDSFIEDDSKEYYCDICEEERKP KHHVYCCKKCKFVAHIQCALNKIIDTKLDHGSNSSLLEETEQSNAEFPTHLSIKYVDH PHVLSYNEATEQNKSLLCNACCQEIFYRHYACEDCEYYLHETCTTLPYEVSHPLHRQH PLKLFTDIGEFPCYQCGDHSGGFFYICYPCDFKLDLKCAMTPIAPNKEGPRQIEMERL SKLCPFNQNHKLEFFNTRANLIKDLKCYACLLPIVGSAYRCRECFYTYVHESCLALVR EMQHPFHPLHLLHPQIFSSMFDQQNFSWMWSVSCFACANTIDIGYGCQKCDFRLHFNC AYSLKRALKYKSHIHNLYYFGLRAEKRARACNKCKSLLDGEPFYHCMECGISLHIKCV PIPHLIKSKSHIHSLTLKDYFVEDGSGEYYCDICEEERNSKNHVYYCEECDGQFVAHI ECMLHTLYISPPYTFDLNDHIFVHC" mobile_element 862555..865457 /note="source:CACAO_M_E33007_F33_scaffold_4 1 2903" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(865240..868982) /locus_tag="TCM_027020" /note="dbxref CacaoGD:Thecc1EG027020" mRNA complement(join(865240..865609,865891..865993, 868391..868982)) /locus_tag="TCM_027020" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS complement(868451..868828) /locus_tag="TCM_027020" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25643.1" /translation="MSKLVYSQRKLSLFGSFSLFYCFIVLSSFFLHRYIVITMSPPYH HCHNYSSSFEPTKCHQDAEIIKELIMRSRLRNYVAKFKNYKINSQDVILKSTTLDLVI KMDWPRIKWRKLDWKTGYYMALI" gene 871858..874841 /locus_tag="TCM_027021" /note="dbxref CacaoGD:Thecc1EG027021" mRNA join(871858..871877,872005..872091,873007..874059, 874809..874841) /locus_tag="TCM_027021" /product="Cysteine/Histidine-rich C1 domain family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027002t2" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc2037t1" CDS join(873367..874059,874809..874829) /locus_tag="TCM_027021" /note="paralog of Thecc1EG027002t2" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein" /protein_id="EOY25644.1" /db_xref="Phytozome:POPTR_0019s03690.1" /db_xref="TAIR:AT2G21830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="MERFSKLCLFNQNHKLEFFNVRSKSLDLKCDACRKQIVGPAYRC GSLFCNYQLHESCLALVQEMQHPFHPLHPLHPQVFRSQYCSACKQQMNAISYSCQQCD LHLHFDCASSLKLALKLKFHQHSLYYFGPHTVHSFGLCDRCKNHVSGAPLYHCMECGI SLHFGCVQMPHSIKSKCHIHPLTLKDSFVEDDSEEYYCNICEEERNSENHVYCCEECD GQFVAHIECMLPTDFEFVD" gene 875052..875677 /locus_tag="TCM_027022" /note="dbxref CacaoGD:Thecc1EG027022" mRNA join(875052..875174,875263..875677) /locus_tag="TCM_027022" /product="Phloem protein 2-A4, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400067454" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027002t3" /inference="similar to AA sequence:Phytozome:POPTR_0012s12110.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1797t1" CDS join(875092..875174,875263..875632) /locus_tag="TCM_027022" /note="paralog of Thecc1EG027002t3" /codon_start=1 /product="Phloem protein 2-A4, putative" /protein_id="EOY25645.1" /db_xref="Phytozome:POPTR_0012s12110.1" /db_xref="TAIR:AT1G33920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA66" /translation="MLFARDLLISWVEDQRYWHWSYQKETNSDVLIDVAELLAVCWLE MRVKFNVKKLSPKTLYGVVFVFKLTNEAYGWDIPVNFGFTLPNGYKVELKETLMTKPK GVWIEIPVGEFTTSSEIVGELDIYCHQYDVLTWKGGLIIKGVSILPKN" mobile_element 876413..878500 /note="source:scaffold_2_CACTA_0252 12935 15024" /mobile_element_type="transposon:TIR/CACTA" mobile_element 879237..881008 /note="source:INTACT52F_F339_scaffold_1-int 97 1924" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 881113..881450 /note="source:INTACT1330F_F382_scaffold_8-int 1736 2073" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(886223..886538) /note="source:INTACT1604F_F75_scaffold_10-int 5256 5575" /mobile_element_type="retrotransposon:LTR/Copia" gene 888025..892290 /locus_tag="TCM_027024" /note="dbxref CacaoGD:Thecc1EG027024" mRNA join(888025..888944,889058..889156,890134..891177, 891569..892290) /locus_tag="TCM_027024" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT2G21850.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027018t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1622t3" CDS join(888102..888944,889058..889156,890134..891177, 891569..891616) /locus_tag="TCM_027024" /note="paralog of Thecc1EG027018t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY25646.1" /db_xref="Phytozome:POPTR_0019s03690.1" /db_xref="TAIR:AT2G21840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="MDYVCAKCSNLSRGHVYCCKNCDFKLEYLCAFSPNAENNKLIID GHISKKIHHFIFNQSLILFNYRRVGKYDYCCSWCEKHLSGMSYGKLEFFNQVFFHDSC LINMPSIIVKHPFHPSHPLQIHMVFSKYRCNACNYSLKGIQAYCCKKCGFYLHVLCAR LQPSLKVELHEHYLSYFQIKSRWRGFRCKICNSNCSDGNKESVCYRCVQCDFNYHFNC LGVLSSTRHKYHRHELMLVDSFIEDDSKEYYCDICEEERKPKHHVYCCKKCKFVAHIE CALNKVVDTKLDHGSASGLLVSKEETEQRNAEFPTHLSIKYIDHPHVLSYNEATEQNK SLLCKACCQEIFDQHYACEYYLHETCTTLPYEVSHPLHRQHPLKLFTDIGAFPCSQCR DYSDGFSYICYPCDFKLDVKCAAIPIAPNKEGRGQIEMERLSKLCPFNHNHKLEFFNC RANVIKNLKCYACLLPIVGSAYRCRECFYTYAHESCLALVREMQHPFHPLHFLHPQIF SRMWSPFCFACGNSIDMGYSCQKYDFHLHFNCADSLKRALKYKSHVHNLYYFRLRTEM HPRACNKCESSLDSQPFYHCLECGIRLHIKCVPTPHLIKSKCHIHHLILKDHFVEDDS REYYCDICEEERNSNNHVYYCEECYGQFVAHIECVLPTVDKAEPAPEASLIQN" gene 892245..913308 /locus_tag="TCM_027025" /note="dbxref CacaoGD:Thecc1EG027025" mRNA join(892245..892442,905788..906799,906883..907008, 907795..908853,909907..910041,910167..910288, 910378..910788,912927..913308) /locus_tag="TCM_027025" /product="Cysteine/Histidine-rich C1 domain family protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g005330.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027002t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.27 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc2675t1" mobile_element 895724..895756 /note="source:CACAO_M_E44258_F10_scaffold_5 3006 3041" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(896523..896552) /note="source:CACAO_M_E12044_F76_scaffold_2 21272 21301" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 897395..897522 /note="source:scaffold_3_CACTA_0396 884 1001" /mobile_element_type="transposon:TIR/CACTA" mobile_element 898929..900109 /note="source:scaffold_5_CACTA_0607 4920 6093" /mobile_element_type="transposon:TIR/CACTA" CDS join(905825..906799,906883..907008,907795..908853, 909907..910041,910167..910288,910378..910747) /locus_tag="TCM_027025" /note="paralog of Thecc1EG027002t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein" /protein_id="EOY25647.1" /db_xref="Phytozome:POPTR_0019s03690.1" /db_xref="TAIR:AT2G21840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="MDGLAYSCERCKFWLHNSCVHRQLPPQISAHPFHSQHKLSLLWS NHIDYICAKCFNLSRGHRYYCKDCDFSLEYPCAFSTNDEKNRLNDETPKKVRRFNKSL TLFNYRRVRKYEYTCSWCEMHLSEMSYGCLDEGVYIWFHDSCLIHIPSIIFKHPFHPS HPLPLRNIYIDNRLCNACNLPIWEFRKAYCCRKCEFHLHVHCAKLRPSLKVELHEHDL TFFRIKTNTATHLCRLCGFSFDAIGIESAFYRCVQCNFNYHFKCLTIPHFTSHKYHRH DLMLIDSFIEDDSKECYCDICEEERKPKHRVYCCKKCKFVAHIECALKKVTYHVPLRK ILMLIFSLPQFADMKLDQGSTSSLLDSEASMSKVQIEHFDHLHLLSYNEAIEQNENLL CNACRQEIFDQHYACEDCKYYLHEMCTTLSYEVSHPLHRQHPLKLFTDIVEFTCHGCR DHSGGFAYMCLPCDFQLDVKCATSPILPKNERQKLKEMEKVSKVCPFNQNHKLDFFNH RPDLKDLALACDACKLPILGPGYTCRDCFNVKIHESCLALMREMQLTFHPLHPLYPQI GDWENCSACRFKIIERIGYSCRQCDFHLHLHCANSLKLALKIKSHMHNLYYFGPDYEK SYHLCNKCKSYIGKEPFYYCVECNMNLHLKCVPIPCPVKSKCHMHHLTLKNHFVEDDS GEYYCDICEEERNSKNHCYYCEECAGLFVAHIECVLLPEFEFADGNVHEFSNIQDANS PIDKSSMDKLLSEPHAEVYLNQNREKYWVDKKLHKYCFMLFARDFSITWAEDHRYWRW SYQRERNSDVLIDVAELLDVCWLEMHVSINVKKLSAKTLYGVVFVFKLTDKAYGWGIP VTFGFTLPNGYKVEHKEILMTKPIGVWTEIHIGEFTTSSEIVGELDIYCHEYDKLFWK GGLVVKGVTILPKN" mobile_element complement(911704..912942) /note="source:scaffold_1_CACTA_0006 8529 9832" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(912937..913202) /note="source:scaffold_3_CACTA_0392 2406 2672" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(913202..913496) /note="source:INTACT458_F219_scaffold_7-int 2805 3121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 913210..913651 /note="source:CACAO_M_S_E38315_F276_scaffold_4 19458 19846" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(913497..913591) /note="source:CACAO_on_E205_scaffold_7 4803 5186" /mobile_element_type="transposon:TIR/Mutator" mobile_element 913523..913757 /note="source:CACAO_Mutator_E1149_scaffold_5 4353 4605" /mobile_element_type="transposon:TIR/Mutator" mobile_element 913863..915317 /note="source:INTACT579_F10_scaffold_3-int 3555 4930" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(914713..917730) /note="source:CACAO_M_E58877_F5_scaffold_9 16464 19399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 915284..926298 /note="source:INTACT345_F202_scaffold_1-int 1798 14894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 926280..927745 /note="source:INTACT345_F202_scaffold_1-int 10027 11373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 927004..927233 /note="source:CACAO_M_S_E38315_F276_scaffold_4 18496 19321" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(927234..928253) /note="source:INTACT458_F219_scaffold_7-int 2797 3785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 928254..928397 /note="source:CACAO_M_S_E38315_F276_scaffold_4 19322 19846" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 928621..929790 /note="source:INTACT579_F10_scaffold_3-int 3555 4700" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 931080..931959 /note="source:scaffold_8_CACTA_0851 1635 2517" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(931097..931803) /note="source:scaffold_7_CACTA_0785 5715 6442" /mobile_element_type="transposon:TIR/CACTA" gene complement(932195..941501) /locus_tag="TCM_027030" /note="dbxref CacaoGD:Thecc1EG027030" mRNA complement(join(932195..932383,932671..932848, 935101..935392,936113..936184,936292..936329, 936496..936569,939207..940040,940368..940562, 940803..941501)) /locus_tag="TCM_027030" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(932337..932383,932671..932848, 935101..935392,936113..936184,936292..936329, 936496..936569,939207..940040,940368..940562, 940803..940995)) /locus_tag="TCM_027030" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25648.1" /translation="MRLSLASNNSGVKSQNNEKTFPFREPPPRVYHQHSRNFRRKLSL VNRHFQQPRPHNTLTDFTVLGFQDPTDIANDIQKSGKSGFSVKRISGRNFLVSVPDRK FYEESKGNSWCWLTRWFDHIQEWFLNADQDDIIVNANAISMPFQEALPPVKLDHEHFQ PQKSSKRCSKGVSSTSHDNQLPAQLDLLCIQPSTNNQICISQVNNPIPHPSSSKTDAV CVLESLNKNVESSTLNGPSKALDLPIPLSVHGPIELVRTMPSDVQGINIAVDLDDGPC PLAHSNIFMPAVNTPVELQLISQGLNCRASSWVQVSLEKSVSSSNEDTSLDFSNDFSS DRSLSLAKVFLVSSKGGKNGSKSFNKLRKKGIKNLYRKSKADFITLSQDMSDNSNHSD HYIEAEDTWNLSKKLVGITLVNCTKSVGTQLASLRFLEGWFGGVSPIFHPMIRFPRHI SIVVDKESRAVDLWNNGAWTPLHHRISFTWPPPIDGEFKFDVDGSARGKPGPAGCGAI LRNSAGFVVGIFFGPLGSHDFNFAEWYAILQAMRVFAASPFKDSRLIIESDSRILLAW LSPSSGVLPRPQLPAYHAKLVNCRPTTPSSGPSSVDLPFLSNRAAPATPCRLHHSHWF ECALLCFSNSMAFLSC" mobile_element 932693..933493 /note="source:CACAO_Again_on_E5_scaffold_1 4015 4797" /mobile_element_type="transposon:TIR/hAT" mobile_element 932813..933557 /note="source:scaffold_9_CACTA_0938 2179 2854" /mobile_element_type="transposon:TIR/CACTA" mobile_element 933531..934481 /note="source:scaffold_5_CACTA_0618 2795 3748" /mobile_element_type="transposon:TIR/CACTA" mobile_element 941646..942173 /note="source:scaffold_5_CACTA_0610 6069 6671" /mobile_element_type="transposon:TIR/CACTA" gene 941662..952252 /locus_tag="TCM_027031" /note="dbxref CacaoGD:Thecc1EG027031" mRNA join(941662..941797,941998..942031,942280..942391, 943046..943109,947985..947994,948134..948258, 948419..948749,952008..952252) /locus_tag="TCM_027031" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(941736..941797,941998..942031,942280..942391, 943046..943109,947985..947994,948134..948258, 948419..948749,952008..952106) /locus_tag="TCM_027031" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25649.1" /translation="MSLWKDTFVHFRNMCVYIMKRDRTSLIAIYTKVNIRRWHNQMCY WLTTLGLFSIISNLVVSSNENPDPIGKKTFKTLVLEINVVTSENDKCAIHTHFYKFLF LRCHACHKSIIGQAYRCGSLFSSYQLHESCLAHVFTNIIFIILDHILWIPQNYVTDAK SMLVKHLYHCMECRIFLHIECVPVPHSIKSKCHIHHLTLKDHFVEDDSREYYCNLCKE EMTPENHVFCCEECDGQFVVHIECVLLTAKWPLEYGVALDTFRYPNMGKVMTKAKKER SM" mobile_element 942506..946710 /note="source:scaffold_6_CACTA_0710 140 4289" /mobile_element_type="transposon:TIR/CACTA" mobile_element 946681..947192 /note="source:scaffold_5_CACTA_0610 6069 6670" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(952402..952494) /note="source:scaffold_10_CACTA_0139 4799 4890" /mobile_element_type="transposon:TIR/CACTA" gene complement(955353..956861) /locus_tag="TCM_027032" /note="dbxref CacaoGD:Thecc1EG027032" mRNA complement(join(955353..955731,955872..956663, 956803..956861)) /locus_tag="TCM_027032" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s16100.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s16100.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc4397t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc4522t1" CDS complement(join(955537..955731,955872..956549)) /locus_tag="TCM_027032" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /protein_id="EOY25650.1" /db_xref="Phytozome:POPTR_0011s16100.1" /db_xref="TAIR:AT2G34820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGH4" /translation="MALSYCSNCLKPEISSFQQAEKELAGDYHLDSVSGFDSSLALLD TFIDPFLQPGGLLFSDGYTNLLPSLSSPPEYIISSFPPEEFEFELCQEYPKRQKNVSN YYCSNFGANFLAGFVPNSAPGPAATDLFLPKIPVPLPEFEPEMPTFNCENENAKKTSP VSVSNLQSIAARQRRRKITDKTQELGKLIPGGHKMRTAEMLRAAYKYVNFLQAQVGVL EAMWSFHQGKEEALMHSQELPNLLASQAIQEKLYSEEKCLIPKDFVQTLANDYQIQSK PLIIEEINRILLTS" gene 958941..965953 /locus_tag="TCM_027033" /note="dbxref CacaoGD:Thecc1EG027033" mRNA join(958941..959372,959468..959523,959614..959665, 959826..959888,960827..960907,961684..961764, 963854..963919,964106..964222,964866..964913, 965045..965130,965411..965471,965556..965953) /locus_tag="TCM_027033" /product="Toprim domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30075.m001134" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027034t1" /inference="similar to AA sequence:ricco:30075.m001134" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g221t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g221t5" mRNA join(958941..959372,959473..959523,959614..959665, 959826..959888,960827..960907,961684..961764, 963854..963919,964106..964222,964866..964913, 965045..965130,965411..965471,965556..965953) /locus_tag="TCM_027033" /product="Toprim domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30075.m001134" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027034t1" /inference="similar to AA sequence:Phytozome:GSVIVT01037928001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:PASA:2:TSA:puevd3b026136t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g221t5" CDS join(959079..959372,959468..959523,959614..959665, 959826..959888,960827..960907,961684..961764, 963854..963919,964106..964222,964866..964913, 965045..965130,965411..965471,965556..965630) /locus_tag="TCM_027033" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30075.m001134; paralog of Thecc1EG027034t1" /codon_start=1 /product="Toprim domain-containing protein, putative isoform 1" /protein_id="EOY25651.1" /db_xref="TAIR:AT1G30680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H0F9" /translation="MPFVNIIRHAPFIFFVNTTTNYKSSFVIIPPRLGLGRRICSCSG SLPSAPKSNVPLSPSQQTINGGKVTELKKKVELLGIQGHDSCLPGRYNYLFCPKCRGG KSMGRTLSLHIIEKGDFAMWRCFQTDCGWAGQVFADSSKIIMNGTVLEPIGDELIAYF AERRISKATLQRNAVMQRSGDQAVIAFTYRRNGVIVGCKYRTLEKKFWQEKGTKKWLY GIDDIKEAATVVVVEGEIDKLAVEEAGVHNCVSVPCGAPQTVFAKELPTLEKDIAYQY LWNSKEYLDKVSCIILATDVDDPGNALAEELARRLGKERCWRVEWPKKDDFSCFKDAN EVLKCLGPEALKEVIENAKPYQEYM" CDS join(959486..959523,959614..959665,959826..959888, 960827..960907,961684..961764,963854..963919, 964106..964222,964866..964913,965045..965130, 965411..965471,965556..965630) /locus_tag="TCM_027033" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG027034t1" /codon_start=1 /product="Toprim domain-containing protein, putative isoform 2" /protein_id="EOY25652.1" /db_xref="Phytozome:GSVIVT01037928001" /db_xref="TAIR:AT1G30680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H0F9" /translation="MGRTLSLHIIEKGDFAMWRCFQTDCGWAGQVFADSSKIIMNGTV LEPIGDELIAYFAERRISKATLQRNAVMQRSGDQAVIAFTYRRNGVIVGCKYRTLEKK FWQEKGTKKWLYGIDDIKEAATVVVVEGEIDKLAVEEAGVHNCVSVPCGAPQTVFAKE LPTLEKDIAYQYLWNSKEYLDKVSCIILATDVDDPGNALAEELARRLGKERCWRVEWP KKDDFSCFKDANEVLKCLGPEALKEVIENAKPYQEYM" mobile_element 962144..962979 /note="source:CACAO_Again_on_S_E193_scaffold_6 1 836" /mobile_element_type="transposon:TIR/hAT" gene 966243..980315 /locus_tag="TCM_027034" /note="dbxref CacaoGD:Thecc1EG027034" mRNA join(966243..966871,967637..967770,968346..968401, 968498..968555,968648..968758,970129..970212, 971065..971145,971365..971430,971514..971630, 973645..973692,973782..973867,974042..974102, 975289..975471,975577..975708,976335..976396, 977216..977299,977608..977739,978285..978381, 978470..978604,978677..978744,979663..979778) /locus_tag="TCM_027034" /product="Toprim domain-containing protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021728001" /inference="similar to AA sequence:Phytozome:GSVIVT01021728001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc786t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc786t9; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc792t9" mRNA join(966243..966871,967637..967770,968346..968401, 968498..968555,968648..968758,970129..970212, 971065..971145,971365..971430,971514..971630, 973645..973692,973782..973867,974042..974102, 975289..975471,975577..975708,976335..976396, 977216..977299,977608..977739,978285..978381, 978470..978604,978677..978719,979623..979778) /locus_tag="TCM_027034" /product="Toprim domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021728001" /inference="similar to AA sequence:Phytozome:GSVIVT01021728001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc786t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc786t9; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc792t9" mRNA join(966285..966871,967637..967770,968346..968401, 968498..968555,968648..968758,970129..970212, 971065..971145,971365..971430,971514..971630, 973645..973692,973782..973867,974042..974102, 975289..975471,975577..975708,976335..976396, 977216..977299,977608..977739,978285..978381, 978470..978604,978677..978744,979623..980315) /locus_tag="TCM_027034" /product="Toprim domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021728001" /inference="similar to AA sequence:Phytozome:GSVIVT01021728001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc786t9" mRNA join(966285..966871,967637..967770,968346..968401, 968498..968555,968648..968758,970129..970212, 971065..971145,971365..971430,971514..971630, 973645..973692,973782..973867,974042..974102, 975289..975471,975577..975708,976335..976396, 977216..977299,977608..977680,979623..980315) /locus_tag="TCM_027034" /product="Toprim domain-containing protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021728001" /inference="similar to AA sequence:Phytozome:GSVIVT01021728001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:PASA:2:TSA:puevd3b026137t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc786t9" CDS join(966598..966871,967637..967770,968346..968401, 968498..968555,968648..968758,970129..970212, 971065..971145,971365..971430,971514..971630, 973645..973692,973782..973867,974042..974102, 975289..975471,975577..975708,976335..976396, 977216..977299,977608..977739,978285..978381, 978470..978604,978677..978744,979663..979732) /locus_tag="TCM_027034" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Toprim domain-containing protein isoform 3" /protein_id="EOY25655.1" /db_xref="Phytozome:GSVIVT01021728001" /db_xref="TAIR:AT1G30680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B5X582" /translation="MLRFPDHIRNNPRLRLHKLSLFSCNSAALMASKTFSSSFSLLPL TPSPKRLSTPCKRLVPYLSSKPYSKNHSLSLRTNGFSSIPSANVSAPVYSKELEDRPL NMRSLEILKHKLKQLGIDISACVPGRENRLLCPSCNGGESEEISLSLFINQDGSSASW MCFRAKCGWKGITKAFADGKPSYANLSRVNKVKVKREITVESLQLEPLCNQLIAYFAE RMISAETLKRNAVMQKKSGEEIAIAFPYWRKGSLVNCKYRDIAKRFWQEKDTEKIFYG LDDIEDASDIIIVEGEIDKLAMEEAGFRNCVSVPDGAPPSVSSKEVPAEEQDTKYQYL WNCKEYLKKASRIILATDGDPPGQALAEELARRLGRERCWRVKWPKKNEVDHFKDANE VLMYLGPSVLKDVIENAELYPIRGLFNFRDFFDEIDRYYHRTLGYEFGVPTGWRALDG LYNVVPGELTVVTGVPNSGKSEWIDALLCNLNESVGWKFALCSMENKVRDHARKLLEK CIRKPFFDTSYGSSVERMSVEELEKGKKWLSDTFYLVRCENDSLPSIKWVLDLAKAAV LRHGVRGLLIDPYNELDHQRPVSQTETEYVSQMLTKIKRFAQHHSCHVWFVAHPRQLH HWIGAPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPVDQVQVCVRKVRNKVVGTIG DAFLSYDRSNRSSCSCKCGLKFCIVWIMMT" CDS join(966598..966871,967637..967770,968346..968401, 968498..968555,968648..968758,970129..970212, 971065..971145,971365..971430,971514..971630, 973645..973692,973782..973867,974042..974102, 975289..975471,975577..975708,976335..976396, 977216..977299,977608..977739,978285..978381, 978470..978604,978677..978744,979623..979671) /locus_tag="TCM_027034" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Toprim domain-containing protein isoform 1" /protein_id="EOY25653.1" /db_xref="Phytozome:GSVIVT01021728001" /db_xref="TAIR:AT1G30680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B5X582" /translation="MLRFPDHIRNNPRLRLHKLSLFSCNSAALMASKTFSSSFSLLPL TPSPKRLSTPCKRLVPYLSSKPYSKNHSLSLRTNGFSSIPSANVSAPVYSKELEDRPL NMRSLEILKHKLKQLGIDISACVPGRENRLLCPSCNGGESEEISLSLFINQDGSSASW MCFRAKCGWKGITKAFADGKPSYANLSRVNKVKVKREITVESLQLEPLCNQLIAYFAE RMISAETLKRNAVMQKKSGEEIAIAFPYWRKGSLVNCKYRDIAKRFWQEKDTEKIFYG LDDIEDASDIIIVEGEIDKLAMEEAGFRNCVSVPDGAPPSVSSKEVPAEEQDTKYQYL WNCKEYLKKASRIILATDGDPPGQALAEELARRLGRERCWRVKWPKKNEVDHFKDANE VLMYLGPSVLKDVIENAELYPIRGLFNFRDFFDEIDRYYHRTLGYEFGVPTGWRALDG LYNVVPGELTVVTGVPNSGKSEWIDALLCNLNESVGWKFALCSMENKVRDHARKLLEK CIRKPFFDTSYGSSVERMSVEELEKGKKWLSDTFYLVRCENDSLPSIKWVLDLAKAAV LRHGVRGLLIDPYNELDHQRPVSQTETEYVSQMLTKIKRFAQHHSCHVWFVAHPRQLH HWIGAPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPVDQVQVCVRKVRNKVVGTIG DAFLSYDRVTGVYTDIDEPQKKQ" CDS join(966598..966871,967637..967770,968346..968401, 968498..968555,968648..968758,970129..970212, 971065..971145,971365..971430,971514..971630, 973645..973692,973782..973867,974042..974102, 975289..975471,975577..975708,976335..976396, 977216..977299,977608..977680,979623..979649) /locus_tag="TCM_027034" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Toprim domain-containing protein isoform 4" /protein_id="EOY25656.1" /db_xref="Phytozome:GSVIVT01021728001" /db_xref="TAIR:AT1G30680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B5X582" /translation="MLRFPDHIRNNPRLRLHKLSLFSCNSAALMASKTFSSSFSLLPL TPSPKRLSTPCKRLVPYLSSKPYSKNHSLSLRTNGFSSIPSANVSAPVYSKELEDRPL NMRSLEILKHKLKQLGIDISACVPGRENRLLCPSCNGGESEEISLSLFINQDGSSASW MCFRAKCGWKGITKAFADGKPSYANLSRVNKVKVKREITVESLQLEPLCNQLIAYFAE RMISAETLKRNAVMQKKSGEEIAIAFPYWRKGSLVNCKYRDIAKRFWQEKDTEKIFYG LDDIEDASDIIIVEGEIDKLAMEEAGFRNCVSVPDGAPPSVSSKEVPAEEQDTKYQYL WNCKEYLKKASRIILATDGDPPGQALAEELARRLGRERCWRVKWPKKNEVDHFKDANE VLMYLGPSVLKDVIENAELYPIRGLFNFRDFFDEIDRYYHRTLGYEFGVPTGWRALDG LYNVVPGELTVVTGVPNSGKSEWIDALLCNLNESVGWKFALCSMENKVRDHARKLLEK CIRKPFFDTSYGSSVERMSVEELEKGKKWLSDTFYLVRCENDSLPSIKWVLDLAKAAV LRHGGDWRIYGH" CDS join(966598..966871,967637..967770,968346..968401, 968498..968555,968648..968758,970129..970212, 971065..971145,971365..971430,971514..971630, 973645..973692,973782..973867,974042..974102, 975289..975471,975577..975708,976335..976396, 977216..977299,977608..977739,978285..978381, 978470..978604,978677..978719,979623..979627) /locus_tag="TCM_027034" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Toprim domain-containing protein isoform 2" /protein_id="EOY25654.1" /db_xref="Phytozome:GSVIVT01021728001" /db_xref="TAIR:AT1G30680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B5X582" /translation="MLRFPDHIRNNPRLRLHKLSLFSCNSAALMASKTFSSSFSLLPL TPSPKRLSTPCKRLVPYLSSKPYSKNHSLSLRTNGFSSIPSANVSAPVYSKELEDRPL NMRSLEILKHKLKQLGIDISACVPGRENRLLCPSCNGGESEEISLSLFINQDGSSASW MCFRAKCGWKGITKAFADGKPSYANLSRVNKVKVKREITVESLQLEPLCNQLIAYFAE RMISAETLKRNAVMQKKSGEEIAIAFPYWRKGSLVNCKYRDIAKRFWQEKDTEKIFYG LDDIEDASDIIIVEGEIDKLAMEEAGFRNCVSVPDGAPPSVSSKEVPAEEQDTKYQYL WNCKEYLKKASRIILATDGDPPGQALAEELARRLGRERCWRVKWPKKNEVDHFKDANE VLMYLGPSVLKDVIENAELYPIRGLFNFRDFFDEIDRYYHRTLGYEFGVPTGWRALDG LYNVVPGELTVVTGVPNSGKSEWIDALLCNLNESVGWKFALCSMENKVRDHARKLLEK CIRKPFFDTSYGSSVERMSVEELEKGKKWLSDTFYLVRCENDSLPSIKWVLDLAKAAV LRHGVRGLLIDPYNELDHQRPVSQTETEYVSQMLTKIKRFAQHHSCHVWFVAHPRQLH HWIGAPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPVDQVQVCVRKVRNKVVGTIG " gene 980476..983419 /locus_tag="TCM_027035" /note="dbxref CacaoGD:Thecc1EG027035" mRNA join(980476..981130,981224..982218,982347..982471, 982560..982704,982813..983419) /locus_tag="TCM_027035" /product="Sec14p-like phosphatidylinositol transfer family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s46570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033385t1" /inference="similar to AA sequence:ricco:30075.m001136" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc156t6" CDS join(980995..981130,981224..982218,982347..982471, 982560..982704,982813..983079) /locus_tag="TCM_027035" /note="dbxref ricco:30075.m001136; paralog of Thecc1EG033385t1" /codon_start=1 /product="Sec14p-like phosphatidylinositol transfer family protein" /protein_id="EOY25657.1" /db_xref="TAIR:AT1G30690.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGH8" /translation="MFLSKIYNRCGSLTFLSLQNKLAAIHCSSSRREKRKEFEAKSKF KVMVVEVNVDETQAGQVFVPEEEPKKVAQDNGKVVDSEIDDSKPKTVEKSSSYREESN FLSDLKEFEKKALSELKSKLEEAILGNSLLRKQEPEKDEKPSEEKEEKEKEVADEKEK EEEAKGGEEGESLVGEEEAKPEGGEEKTAQECERKKSEEEGIEINKDVSIWGVPLLPC KGGEATDVVLLKFLRAREFKVNDAFEMLKNTLQWRKDGNIDSILDEDFGAGLGSAAYM NGIDKEGHPVCYNIYGVFENEELYKKTFGTEEKRGQFLRWRFQLMEKGIQKLDLRPGG VTCLLQINDLRNSPGPSRKELRVAMRQAVGALQDNYPEFVARNIFINVPFWYYALNAL LSPFLTQRSKSKFVVVRPAKVTETLLKYIPAEEVPVQYGGFKKENEFEFCGQDATVTE IIVKAGSTMTIEIPADEVGSTSIWELIVLGWEVNYKAEFVPSDEGSYTIIVQKSKKIS VSQSQEGPIGNTFRNNEQGKLVLTIENTSGKKKRVLYRYKTKKSSPC" gene 983466..990560 /locus_tag="TCM_027036" /note="dbxref CacaoGD:Thecc1EG027036" mRNA join(983466..983556,983617..983729,988456..990560) /locus_tag="TCM_027036" /product="FAD-binding Berberine family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g25460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027041t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s43120.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc445t7" mobile_element 984679..985168 /note="source:CACAO_PIF_E119_scaffold_3 1765 2267" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(985399..985485) /note="source:CACAO_hAT_E2982_scaffold_7 935 1033" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(985485..986230) /note="source:CACAO_Again_on_E100_scaffold_4 4 770" /mobile_element_type="transposon:TIR/hAT" mobile_element 986604..987727 /note="source:scaffold_6_CACTA_0699 5951 7054" /mobile_element_type="transposon:TIR/CACTA" mobile_element 987924..988222 /note="source:scaffold_6_CACTA_0699 7043 7346" /mobile_element_type="transposon:TIR/CACTA" mobile_element 988262..988498 /note="source:scaffold_6_CACTA_0699 9519 9724" /mobile_element_type="transposon:TIR/CACTA" mobile_element 988536..990792 /note="source:scaffold_6_CACTA_0699 7339 9593" /mobile_element_type="transposon:TIR/CACTA" CDS 988753..990339 /locus_tag="TCM_027036" /note="paralog of Thecc1EG027041t1" /codon_start=1 /product="FAD-binding Berberine family protein" /protein_id="EOY25658.1" /db_xref="Phytozome:POPTR_0001s43120.1" /db_xref="TAIR:AT5G44440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZA3" /translation="MKSPSFSMPLFLLLLFSFSWATFARTHDSFLQCLSLHSDINARL IYTQNSSSYSSVLELSVRNARFSTPTTPRPLVIVTPSNVSHIQATINCSREHDMQIRI RSGGHDYEGLSYVSKVPFVIIDLINMRSIDVDTENSTAWIQAGATIGELYYRIAEKSE TLAFPAGVCPTVGVGGHFSGGGYGMMMRKFGLAADQIIDAHLVDVHGRILDRNSMGED LFWAIRGGGGASFGVIVAWKVKLVSVPSTVTVFIANRTLEENATKLVHKWQSVAEKIH EDLYIRVFLRAVNSSQEGNRTIQASFTSLFLGRIDQLIPLMQESFPELGLVKEDCIEM SWIQSILYFAGIPQSESLDVLLNRTDTASFFKGKSDYVTEPIPEIALEGLWQWFYEDL EIVWFEILFSPYGGIMNEIPESETPFPHRSGNLFNIHYVVVWGEEDASTAQKNINFMR RLYKYMEPYVSKSPRAAYMNYRDLDLGSNNKGNYTSYRQASRWGLKYFKNNFNRLIRV KKMVDPQNFFRHEQSIPSLL" mobile_element complement(994392..995131) /note="source:INTACT674_F296_scaffold_6-int 4598 5338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 998367..998586 /note="source:scaffold_6_CACTA_0699 5926 6131" /mobile_element_type="transposon:TIR/CACTA" mobile_element 998676..998720 /note="source:scaffold_6_CACTA_0699 6113 6158" /mobile_element_type="transposon:TIR/CACTA" mobile_element 998721..999726 /note="source:CACAO_M_E45172_F52_scaffold_6 1 1775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(999729..1005809) /note="source:CACAO_M_E42491_F52_scaffold_5 1 6101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1005700..1005825 /note="source:CACAO_M_E36294_F51_scaffold_5 6256 6383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1005810..1010026 /note="source:scaffold_6_CACTA_0699 6193 10363" /mobile_element_type="transposon:TIR/CACTA" gene 1006974..1009009 /locus_tag="TCM_027038" /note="dbxref CacaoGD:Thecc1EG027038" mRNA 1006974..1009009 /locus_tag="TCM_027038" /product="FAD-binding Berberine family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s43120.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027041t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s43120.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g313t1" CDS 1007194..1008798 /locus_tag="TCM_027038" /note="paralog of Thecc1EG027041t1" /codon_start=1 /product="FAD-binding Berberine family protein" /protein_id="EOY25659.1" /db_xref="Phytozome:POPTR_0001s43120.1" /db_xref="TAIR:AT2G34790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q33DP2" /translation="MKSPSFSVPLFLLVLFSFSWATSARTHDSFLQCLSLHSGINARL IYTQNSSSYESVLDLSARNARFSTPTTPRPLVIVTPSNVSHVQATINCSREHDMQIRI RSGGHDYEGLSYVSKVPFVIIDLINMRSIDVDTEKKTAWIQAGATIGELYYRIAEKST TLAFPAGVCPTVGVGGHFSGGGYGMMTRKFGLAADQIIDAHIVTVDGRILDRNSMGED LFWAIRGGGGASFGVIVAWKVKLVSVPSTVTVFTVNRTLEENATKLVHKWQSVAEAID EDLYFRVFLRAVNSSQEGKRTVQASFTSLFLGRIDQLIALMQESFPELGLVKEDCIEM SWIQSILYFPGIPQSESLDVLLNRTGTIRTVTAGIFKAKSDYVTEPIPEIALEGLWQW FYEDESGTLELIFSPYGGIMDEISESETPFPHRAGNLYKIHYAVSWEEEDASTSQKHI NFMRRLYKYMEPYVSKSPRAAYMNYRDLDLGSNNEGNYTSYTQASRWALKYFKNNFNR LIHVKSMVDPQNFFRHEQSVPTLLQG" mobile_element 1010025..1031279 /note="source:scaffold_6_CACTA_0699 1 19562" /mobile_element_type="transposon:TIR/CACTA" gene 1018715..1020677 /locus_tag="TCM_027041" /note="dbxref CacaoGD:Thecc1EG027041" mRNA 1018715..1020677 /locus_tag="TCM_027041" /product="FAD-binding Berberine family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s43120.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027038t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s43120.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc430t6" CDS 1018905..1020494 /locus_tag="TCM_027041" /note="paralog of Thecc1EG027038t1" /codon_start=1 /product="FAD-binding Berberine family protein" /protein_id="EOY25660.1" /db_xref="Phytozome:POPTR_0001s43120.1" /db_xref="TAIR:AT5G44440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q33DP2" /translation="MKSPSFSMPLFLLVLFSFSWATSARTHDSFLQCLSLHSDINARL IYTQNSSSYESVLELSVRNARFSTPTTPRPLVIVTPSNVSHIQATINCSREHDMQIRI RSGGHDYEGLSYVSKVPFVIIDLINMRSIDVDTEEKTAWIQAGATIGELYYRIAEKSA TLAFPAGVCPTVGVGGHFSGGGYGMMTRKFGLAADQIIDAHIVTVDGRILDRNSMGED LFWAIRGGGGASFGVIVAWKVKLVSVPSTVTVFTVNRTLEENATKLVHKWQSVAEAID EDLYFRLFLRAVNSSQEGKRTVQASFTSLFLGRIDQLIALMQESFPEFGLVKEDCIEM SWIQSILYFAEIPQSESLDVLLNRTVTAGFFKGKSDYVTEPIPEIALEGLWQWFYEDE SETLGLIFSPYGGIMDEISESETPFPHRAGNLYNIHYGVSWEEEDASTSQKHINFMRR LYKYMEPYVSKSPRAAYMNYRDLDLGSNNKGKYTSYTQASRWALKYFKNNFNKLIHVK NMVDPQNFFRHEQSVPTLLRE" mobile_element 1031419..1032185 /note="source:scaffold_6_CACTA_0699 4620 5377" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1032558..1032954 /note="source:scaffold_6_CACTA_0699 9303 9681" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1033102..1034802 /note="source:scaffold_6_CACTA_0699 7505 9208" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1034806..1034860 /note="source:CACAO_on_E203_scaffold_7 5822 5875" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 1036454..1049206 /locus_tag="TCM_027044" /note="dbxref CacaoGD:Thecc1EG027044" mRNA join(1036454..1036873,1037787..1038033,1047050..1049206) /locus_tag="TCM_027044" /product="FAD-binding Berberine family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s46660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019754t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s46660.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1148t1" mobile_element 1037703..1037984 /note="source:INTACT674_F296_scaffold_6-int 6916 7183" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1038179..1042235 /locus_tag="TCM_027045" /note="dbxref CacaoGD:Thecc1EG027045" mRNA join(1038179..1038411,1038803..1038930,1039027..1039129, 1040511..1040779,1040864..1040967,1041632..1042235) /locus_tag="TCM_027045" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(1038222..1038411,1038803..1038930,1039027..1039129, 1040511..1040779,1040864..1040967,1041632..1041782) /locus_tag="TCM_027045" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25662.1" /translation="MDSLCASHNDHKVAPQMIIPFLKALPPNAKRPFLDKVKSGGKST LGNTPTLENKAPDELTKVACLALVTCMSLYTANEKKRGYLEERGKFSSHRKIVAPSPI IQWQGIHRVSLVSYLPTIKCLHRLSLSIPYLPPPFGKKDLNLSIGDLARFSSEGINTK RGKRIKDRVTWEKLESGALKFNTDGAFTSNLREFGINGILKYENRVTLTFFSKSISHS DSNMVELLALKETLNPTNVPWRMRSHIIQLSKLLAKVQCWQIKHIPRTASCGGVLRNF AGLVVGIFFGLISCQNFLLHTIISAKEVMHGAKLDPVE" mobile_element complement(1041202..1041429) /note="source:scaffold_8_CACTA_0859 16268 16494" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1041425..1041531) /note="source:scaffold_8_CACTA_0859 15826 15932" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1042639..1042731 /note="source:scaffold_5_CACTA_0607 9967 10060" /mobile_element_type="transposon:TIR/CACTA" CDS 1047050..1048777 /locus_tag="TCM_027044" /note="paralog of Thecc1EG019754t1" /codon_start=1 /product="FAD-binding Berberine family protein" /protein_id="EOY25661.1" /db_xref="Phytozome:POPTR_0001s46660.1" /db_xref="TAIR:AT1G30700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AIG0" /translation="MTCIVFKRFLFGTTHSSLNLKFSYKFLLHLLAFGIIQKTMGSLR PAAVVSLLSVLLLSISLQGTSDSAQETFLQCLLDNSHPSYPISEAIFTPQNPSYSSVL QSSIRNLRFNETFTPKPFLILTAKHESHIQAAIVCARKDNIQMKIRSGGHDYEGLSYV ATVPFFVLDMFNLRSIDVDVANETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVG VGGHFGGGGYGNMMRKYGLSVDNIVDAYFIDVNGRLHDRKSMGEDIFWAIRGGGAASF GVVLAYKIKLVRVPETVTVFRVEKTLEENATDIVDQWQHVADKLPEDLFVRLVLDVVN SSRNTGEKTVRAAFISLFLGDSERLLSIMNERFPALGLTQSDCIETSWVQSVLFWTNI PIETETAILLDRTPSSLVFLKRKSDYVKKPIPKAGLEWLWKRMIELQVPQLLFNPYGG RMAEIPSTATPFPHRAGNLWKIQYVTNWNEAGTEAADHYIGLTRKLHGYMTRFVSKNP REAFLNYRDIDLGVNHNGRQSYMEGRVYGIKYFKGNFNRLVQIKTRVDPGNFFRNEQS IPTLPYKGN" gene 1049984..1050940 /locus_tag="TCM_027046" /note="dbxref CacaoGD:Thecc1EG027046" mRNA join(1049984..1050523,1050796..1050940) /locus_tag="TCM_027046" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031941t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 1050157..1050447 /locus_tag="TCM_027046" /note="paralog of Thecc1EG031941t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25663.1" /translation="MPPRHRVGTSWSPPPTGEFKFNVDDLAKGKSGPAGCGGVLRDSE GYVVGLFFCPLGLHDSNFAKLMAILKALLPFAATPYTASRLIIESDSHVVLS" mobile_element complement(1051444..1056149) /note="source:INTACT477_F225_scaffold_9-int 755 4848" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(1059040..1059633) /locus_tag="TCM_027047" /note="dbxref CacaoGD:Thecc1EG027047" mRNA complement(1059040..1059633) /locus_tag="TCM_027047" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(1059297..1059518) /locus_tag="TCM_027047" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25664.1" /translation="MVTVAVASNRQVILRLDGRSTSFVFICMPIMPFSKTLPDPLPVL ARTFGETPRTILGLFQLGLRWSLRLEQRC" gene 1061855..1063688 /locus_tag="TCM_027048" /note="dbxref CacaoGD:Thecc1EG027048" mRNA join(1061855..1062309,1062401..1062436,1062522..1062779, 1062891..1063027,1063101..1063688) /locus_tag="TCM_027048" /product="FAD-binding Berberine family protein, putative" /inference="similar to AA sequence:Phytozome:Glyma15g14210.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(1062127..1062309,1062401..1062436,1062522..1062779, 1062891..1063027,1063101..1063383) /locus_tag="TCM_027048" /codon_start=1 /product="FAD-binding Berberine family protein, putative" /protein_id="EOY25665.1" /db_xref="Phytozome:Glyma15g14210.1" /db_xref="TAIR:AT1G30700.1" /translation="MHESHIQAVTVCAKKDNIQMKIRSGGHDYEGLSYVATVPFFVLD MFNLRSIDVDVASETAWLASVITSVEVAMKSMRQDIFWAIRGGGAASFGVVLGYKVKL VRVPEKVRVFRVEKTLGEDATDIVDLWQHVEDKLPEDLFVRLVLDVVNSSRNTGEKTL SSICPILDQHSHRDRNRNFVGSNFFIIGFPEEEIRLCEETNSTGWVAEIRSAATPFPH RAGNLWKIQYVTNWNEPGTEAADHYISLTRKLHGYMTRFASRNPREAFLNYRDIDLGV NHNRRQSYMEGRVYEINPLNTQ" gene 1066321..1068119 /locus_tag="TCM_027049" /note="dbxref CacaoGD:Thecc1EG027049" mRNA 1066321..1068119 /locus_tag="TCM_027049" /product="FAD-binding and BBE domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s46360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027054t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s15940.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g225t1" CDS 1066379..1067992 /locus_tag="TCM_027049" /note="paralog of Thecc1EG027054t1" /codon_start=1 /product="FAD-binding and BBE domain-containing protein" /protein_id="EOY25666.1" /db_xref="Phytozome:POPTR_0011s15940.1" /db_xref="TAIR:AT1G26380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZC4" /translation="MRASRSILLPLLSTLLFSIPLVSSNSALDDFLQCLPEHYSNPSK PIADAIYTPTNPSFQSVYELHAYNLRVLTQANATLKPMAIIAALHESHAQATIFCAKH FGLQIRLRSGGHDYEGLSFASSVPFVILDLSNLRSIKIDMASETAWIQAGATTGELYY RIAEKSNVHAFPAGVCTTLGVGGHFTGGGYGPMIRKFGLSIDNVIDAQLIDVNGRILD RKSMGEDVFWAIRGGGGTSFGVILSWKIKLVRVPAKVTVFEVKKTLEQGATDLVYKWL QVAYKLDEDLFIRITPVAITGNGKGNKTVQVSFIGHFLGQTETLLQLVQARFPELGLQ PNDCIEMSWIESTLYWAGFPNGTSIDILLNRVPQSKVFFKTKSDYVKNVIPKAGLKTL WKMMMRIESIWIQMNPYGGRMAEIPESETAFAHRGGNLYKVQYTVHWSEESSEATKKY VGWIRKLYTAMAPYVSSRPREAFLNYRDLDIGSNGSNSSDFAVAKVYGAKYFKTNFLR LARVKAKVDPENFFKNEQSIPPFPSSKSK" gene 1068172..1071970 /locus_tag="TCM_027050" /note="dbxref CacaoGD:Thecc1EG027050" mRNA join(1068172..1068234,1069900..1071970) /locus_tag="TCM_027050" /product="FAD-binding and BBE domain-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15940.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027049t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s15940.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1109t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc4573t1" CDS 1070165..1071769 /locus_tag="TCM_027050" /note="paralog of Thecc1EG027049t1" /codon_start=1 /product="FAD-binding and BBE domain-containing protein, putative" /protein_id="EOY25667.1" /db_xref="Phytozome:POPTR_0011s15940.1" /db_xref="TAIR:AT1G26420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZC4" /translation="MKASNSMLLIRIVYILFFSIPLVKSDSGLDKFLRCLPKHSNSSK PITDSIYTPNNSSFQSVLESSANNLRFLTPLTPKPGAIIAAQDESHIQATIICAKHYG FQIRTRSGGHDHEGLSYVSYVPFIVLDLFNLRSIQIDLESETAWVQAGATIGELYHRI AERSQVHGFPAGICPTVGIGGHVGGGGYGPLMRKYGLTVDNVIDAQMIDVNGRILNRE SMGEDVFWAINGGGGASFGVIFSWKIKLVRVPAKVTVFQVLRTLEQGATDIVYHWQQV AHKLHRDLFIRATPVGVTGTSGNNTVQVSFVGQFLGGTERLLQLMNASFPELSLKQDN CLEMSWIRSTLFWAGYQNGTSVDVLLNRRQNKFFYKVKSDYVKDVIPVTGLETLWKWL MEITDSNFVEMSPYGGRMAEISASETPFPHRAGNLYKIEYGVYWTNGSMEATKQYINW SRNVHAAMAPYVSNNPREAFLNYRDLDLGSNGSNYTDFEVAEVYGAKYFKGNFLRLAR VKAMVDPDNFFKNEQSIPPFPHQNSH" gene complement(1074932..1079603) /locus_tag="TCM_027051" /note="dbxref CacaoGD:Thecc1EG027051" mRNA complement(join(1074932..1075885,1075980..1076131, 1076229..1076361,1076456..1076537,1076627..1076751, 1076846..1076948,1077040..1077313,1077411..1077560, 1079494..1079603)) /locus_tag="TCM_027051" /product="DNA binding protein-like" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029362t1" /inference="similar to AA sequence:Phytozome:Sb01g018395.2" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage" CDS complement(join(1075441..1075885,1075980..1076131, 1076229..1076361,1076456..1076537,1076627..1076751, 1076846..1076948,1077040..1077313,1077411..1077554)) /locus_tag="TCM_027051" /note="paralog of Thecc1EG029362t1" /codon_start=1 /product="DNA binding protein-like" /protein_id="EOY25668.1" /db_xref="Phytozome:Sb01g018395.2" /translation="MDHEYLTDLQLFKPPTPIKVKILRIWKSTTPDNPKNLLSLDFLI ADVKKNVMQAMIRGFDAPLFIPMLKEGAVYLIDKYRIMKSKHNFNVLPEDLMIVLSRM SEIKEIVEDNTQYPDYYFNFVHFKDLPDKIYKKEILTDVIGIVTTITLVTKVQLNNRD VLVKKRDIYIQNASYESLKVVLYGDIALSIQEQEILQRNTNVVLAFAGLMIKTYMRSL YASSCSATRIYIDPEISEVHELKQRYQKQPIQADLQLLEACTQFHSTQQSTVSDIHVA DLLAIEPKKTLNTKFLLTANIIDVQAPNGWYYNACNQCAVGLRFCAGKFWCPIHDEKT PVLTMILELIVEDLTGKIQLLAFGQQAEKLISATIGELVAIKTINKMVLPLPVKTLIN ARKTFKVGLTGKAIEAGLTIFKIFDSTNPTDSSTATSKMYKGTTSVNEQPTCSQPSLL TIQDSQLEMPPSPTNVQVAKELFPEESLGKKMKIE" gene 1079888..1080797 /locus_tag="TCM_027052" /note="dbxref CacaoGD:Thecc1EG027052" mRNA 1079888..1080797 /locus_tag="TCM_027052" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS 1080021..1080314 /locus_tag="TCM_027052" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25669.1" /translation="MVRVVRSCDDHHRMIQQDLGLLRSVTPCHRALKSVGSIAFLLPL LFPCFERFVVFSLFTTLSLPPEPSPTPQQFFLGKLKNRSFLLRPLSSQSTKND" gene complement(1085869..1097195) /locus_tag="TCM_027053" /note="dbxref CacaoGD:Thecc1EG027053" mRNA complement(join(1085869..1086132,1088426..1088639, 1089174..1091187,1094863..1094940,1096674..1097195)) /locus_tag="TCM_027053" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s07020.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016757001" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete" mobile_element complement(1086694..1088430) /note="source:CACAO_M_E35879_F3_scaffold_5 1 1819" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(1088443..1088639,1089174..1091187, 1094863..1094940,1096674..1096814)) /locus_tag="TCM_027053" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25670.1" /db_xref="Phytozome:GSVIVT01016757001" /db_xref="TAIR:AT5G45540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C394" /translation="MRDLITVAHRGDAEVNAKPCGVSIGIRGEECLSRPRGDCHGPDG EFRSKAHWLRKHQASFHSASPLLGVCTFRANKRPAMTIVETVLKLWHGWEIRVLVLLS LSLQVILVAFGSKRKSTASTWVKVLVWSTYMSADWVATVALGVIARSLGNNIPMKHPL QSFWALFLLLHLGGPDTITAYSLEDNELWLRHFLGLVFQTGVAIYILLRSSFDSDTTF FSIAMPVFIAGIIKYGERTYVLMSSSTKRFRTSLFSEKNFTALTKDNDVENSVTSPVD GTFLLRVDFFFKRLKVLFADFILDRKQGHLCNNMIRCLKPDEAFQLVEFELGLLYDLL YTKATLVHSCFGIFLRCITCLASVSALVTFSIIIDEHKHFPVDISVTYFLLVGAVVLE VYALFMLACSDWTKLSLVGKETCFSLKRMTRDKRWSRSIARYNLMKFCLKKEGTKCIK VGQLLGIYEKLEKHRNVEWQQGIDDDLKCLIFDQLGNRLQKPEDLSNAELCKKVLNYR GECVLDELKWSTTEVEFDESILLWHIATQLCYHDDNRTQGFSSLNACSKISRCLSEYM LYLVVMCPNMLPKGFGYIRYKKACEEVIDFFGRKRDMQMEEACKELLERGTNILQGNN IMEKLTVARSKPVILSKGCILAKQLQNLKPPNQARKEKWDMMNKVWVELLTYAAGHCG WKEHAQHLASGGQLLTHVCLLMAHFGISGQFQDKSFYFLQLPSVKPSKRKTWKLYRWI RYINCYKAICKWQKTSIPLSVKILNYKGDCVLDEMKCLELLKWSTIDVEFDESILLKH IATQLCYHDAY" gene 1095292..1132000 /locus_tag="TCM_027054" /note="dbxref CacaoGD:Thecc1EG027054" mRNA join(1095292..1095508,1125876..1127700,1131606..1132000) /locus_tag="TCM_027054" /product="FAD-binding and BBE domain-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027049t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s15940.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element 1096630..1099036 /note="source:CACAO_M_E44285_F323_scaffold_6 1 4688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1099363..1100108 /note="source:CACAO_M_E44285_F323_scaffold_6 2373 3118" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1100433..1103216 /note="source:CACAO_M_E33662_F87_scaffold_4 1 2786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1105504..1107372) /note="source:scaffold_5_CACTA_0607 4851 6667" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1106751..1107579 /note="source:scaffold_5_CACTA_0607 5903 6676" /mobile_element_type="transposon:TIR/CACTA" gene 1107927..1109752 /locus_tag="TCM_027056" /note="dbxref CacaoGD:Thecc1EG027056" mRNA 1107927..1109752 /locus_tag="TCM_027056" /product="FAD-binding and BBE domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15940.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027057t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s15940.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05030t00001" CDS 1108259..1109482 /locus_tag="TCM_027056" /note="paralog of Thecc1EG027057t1" /codon_start=1 /product="FAD-binding and BBE domain-containing protein" /protein_id="EOY25672.1" /db_xref="Phytozome:POPTR_0011s15940.1" /db_xref="TAIR:AT1G26420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZC4" /translation="MFNLRSIQIDMASETAWVQAGATTGELYYRIAEKSKVHGFPSGV CTTLGIGGHFSGGGYGPLMRKYGLSIDNVIDAQLIDANGRILNRKSMGEDVFWAIRGG GGTSFGIILSWTIKLVRVPAKVTVFNVQRTLDQGATDLSYRWQQVAPNLPKDLFLRLQ ADPITGTGSGNKTIRVSFIAHFLGQTDRLIQLMNANFPELGLQRSDCIEMSWVESTLF WAGFPNGTSIDVLLNRVQEDRVFYKTKSDYYKQVIPKEGLETLWEILMDIEDIFIQLN PYGGRMEEISESETAFAHRAGNLYKVQYTVLWSESDGGISAEERYVELSRRLYSAMTP YASSNPREAFINYRDLDIGSNESNNTDFAVASVYGAKYFKNNFLRLTRVKAMIDPENF FKNEQSIPPLPSHKF" mobile_element complement(1112162..1113973) /note="source:scaffold_5_CACTA_0607 4840 6664" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1113370..1114156 /note="source:scaffold_5_CACTA_0607 5903 6665" /mobile_element_type="transposon:TIR/CACTA" gene 1115843..1117489 /locus_tag="TCM_027057" /note="dbxref CacaoGD:Thecc1EG027057" mRNA 1115843..1117489 /locus_tag="TCM_027057" /product="FAD-binding and BBE domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s15940.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027056t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s15950.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15445t1" CDS 1116097..1117320 /locus_tag="TCM_027057" /note="paralog of Thecc1EG027056t1" /codon_start=1 /product="FAD-binding and BBE domain-containing protein" /protein_id="EOY25673.1" /db_xref="Phytozome:POPTR_0011s15950.1" /db_xref="TAIR:AT1G26420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZC4" /translation="MFNLRSIQIDMASETAWVQAGATTGELYYRIAEKSKVHGFPSGV CTTLGIGGHFSGGGYGPLMRKYGLSIDNVIDAQLIDANGRILNRKSMGEDVFWAIRGG GGTSFGIILSWTIKLVRVPAKVTVFNVQRTLDQGATDLSYRWQQVAPNLPKDLFLRLQ AEPITGTGSGNKTIRVSFIAHFLGQTDRLIQLMNTNFPELGLQRSDCIEMSWVESTLF WAGFPNGTSIDVLLNRVQEDRDFYKTKSDYYKKVIPKEGLETLWEILMDIEDIVIQLN PYGGRMEEISESETAFAHRAGNLYKVQYTVLWSESDGGISAAERYVELSRRLYSAVTP YASSNPREAFINYRDLDIGSNESNNTDFAVASVYGAKYFKNNFLRLTRVKAMIDPENF FKNEQSIPPLPSHKF" mobile_element complement(1118365..1118408) /note="source:scaffold_5_CACTA_0608 973 1016" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1118375..1118436 /note="source:scaffold_5_CACTA_0608 8761 8823" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1123193..1124060 /note="source:scaffold_6_CACTA_0699 2797 3661" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1124284..1124834 /note="source:scaffold_6_CACTA_0699 19021 19561" /mobile_element_type="transposon:TIR/CACTA" CDS 1125889..1127646 /locus_tag="TCM_027054" /note="paralog of Thecc1EG027049t1" /codon_start=1 /product="FAD-binding and BBE domain-containing protein, putative" /protein_id="EOY25671.1" /db_xref="Phytozome:POPTR_0011s15940.1" /db_xref="TAIR:AT4G20800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZC4" /translation="MVSSFSSRSFLLKHLKLSCVQSRFKTLCSISTYTTELTNTPIEN LVIQLEKMKASSSVFSASILLFSISLVASDSALDRFLQCLPKNSNPSNPINDAIFTPM NSSFQSIYELRANNLRSLYSATLKPVAIITALHESHAQATVVCAKRHGFQIRIRSGGH DFEGLSFVSSVPFVILDLFNLRSIEIDMASETAWVQAGATTGELYYRIAENSKVHGFP AGVCITLGTGGHFSGGGYGPMMRKYGLSIDNVLDAQLIDANGRILDRKSMGEDVFWAI RGGGGNSFGIILSWKIKLVRVPPKVTVFKVIRTLEQGATDLAYRWQQVAHKLPKELFI RLAPRPLIGTGKGNKTVQVPFIGHFLGQTDELVQLVNSNLPGLGLQRSDCLEMSWVES LLFWTGFHNGTSIEVLLKHRVQSDKVFYKTKCDYFKEVIPKAGLETLWNLLMDIENIY VQLNPYGGRMGEITESETAFPHRAGNLFKVQYTVLWSDAQGGINATERYLEWSRRLYS AMAPYASSSPREAFLNYRDLDVGSNDSNNTDFAAAEVYGAKFFKGNFQRLVLAKTMID PHNFFKNEQSIPRFPSYIQ" mobile_element 1129543..1132476 /note="source:CACAO_M_E44286_F33_scaffold_6 1 2934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1133524..1133803) /note="source:CACAO_on_S_E390_scaffold_9 2570 2850" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1134437..1134675) /note="source:CACAO_on_S_E390_scaffold_9 2384 2616" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1135467..1137722) /note="source:INTACT719_F2_scaffold_4-int 2920 5003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1137723..1137807 /note="source:CACAO_M_E52278_F17_scaffold_7 1 85" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1137810..1138127 /note="source:scaffold_5_CACTA_0601 8413 8729" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1138127..1141835 /note="source:CACAO_M_S_E17777_F2_scaffold_3 8195 11913" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1144290..1146663 /locus_tag="TCM_027058" /note="dbxref CacaoGD:Thecc1EG027058" mRNA 1144290..1146663 /locus_tag="TCM_027058" /product="FAD-binding Berberine family protein" /inference="alignment:exonerate-protein:2:frave:gene20173" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019754t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s16170.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2115t1" CDS 1144657..1146279 /locus_tag="TCM_027058" /note="paralog of Thecc1EG019754t1" /codon_start=1 /product="FAD-binding Berberine family protein" /protein_id="EOY25674.1" /db_xref="Phytozome:POPTR_0011s16170.1" /db_xref="TAIR:AT1G34575.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LNL9" /translation="MKEQPAKMKAAASAILSALSIFFISLSLASSQSIQDKFVQCLCK QSQSSNPIAGAIYTPNNASFSSVLESYVRNLRFMTPETPKPLVIVTALHESHVQATVV CSKSVGLQIRIRSGGHDYEGLSYVSSVPFVILDMFNLRGIDINVRDESAWVQAGASLG EVYYRIAEKSPVHGFPAGVCPTLGVGGHFTGGGYGNMMRKYGLSVDNIIDAKVVDASG RILDRASMGEDLFWAIRGGGAASFCVVLSWKIKLVPVPETVTVFRVDKTLEEGATDLV VKWQQVADRLDDDLFIRLMLSPEKIGSPPGQNTIQASFVAMFLGQTERLLQLMNESFP ELGLQKKDCIKMRWVESVLFWINYPNVSSTDVLLQRIPKSESFLKRKSDYVQQPIPKA GLEAIWKVMMEAENVGMNWNPYGGKMSEILPTATPFPHRAGNIFKIQYGSNWKKPGNE VADNFLNWTRKLYEAMTPYVSKNPRESFLNYRDIDIGVNSNGTLEEGRVYGSKYFKEN FDRLVDVKTQVDPDNFFSYEQSIPTRSSDCRG" gene 1147440..1151427 /locus_tag="TCM_027059" /note="dbxref CacaoGD:Thecc1EG027059" mRNA join(1147440..1147932,1148040..1148129,1148433..1148522, 1148842..1149209,1149336..1149531,1149688..1150014, 1150308..1150320,1150399..1150525,1150645..1151427) /locus_tag="TCM_027059" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1292t1" CDS join(1147555..1147932,1148040..1148129,1148433..1148522, 1148842..1149209,1149336..1149531,1149688..1150014, 1150308..1150320,1150399..1150525,1150645..1150846) /locus_tag="TCM_027059" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25675.1" /translation="MPRMGDYESIQGYADKVLNNVNRLRLLGENVFEKRIVNKLLVSL PEKFEGKISSLEDSKDLGLIYVNKLLNALQAQEQRRALRQDAYVEGAFLARNIEKNLV ENIRRNQELIRRIKERKVVIRNKEGHVEKVCKNRGVKIEEKAAVVEQKDQAEDEDTSC TVVDPTSEKLFTVGTRNKCFALNWMKVFFLKLKSDSLSSFIKFKLQVENQTESTIKKL RTDIGTEYTSRKFEEYLSRYGIVHQLKITYSPQQNGISERKNRTLMEMARCLLFEKSL PKFFWTETVNTANYLLNIPKTKALVNKTPYETCEVSKGYRPLDIKTVKFFVSKNVVFD ENIRWNWDTNSVENAQGQEIVGDYFTESEDNGDLYENINKILVDKPDKQKVIGVKWMY RTKLNSDGSINKHKVRLVVKGFSPTYGKDFCETFAPVAKHDTIKLMVALATRENWHIW HLDFKSAFLNGTIKEDIYVEQPEGLIEPGSEDKIEQKVATPVAFGSKFSKDDGGAEAD ETLYRKLVGSLLYLFASGPDIINVKQELQGYSNRDWVGNVDDSKSISGYCFSFGSALF AWNSKKQEIVTQSFAKAKYMAAAATMNQAL" gene 1151478..1153727 /locus_tag="TCM_027060" /note="dbxref CacaoGD:Thecc1EG027060" mRNA 1151478..1153727 /locus_tag="TCM_027060" /product="FAD-binding Berberine family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s47400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019754t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s47400.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc907t1" CDS 1151930..1153534 /locus_tag="TCM_027060" /note="paralog of Thecc1EG019754t1" /codon_start=1 /product="FAD-binding Berberine family protein" /protein_id="EOY25676.1" /db_xref="Phytozome:POPTR_0001s47400.1" /db_xref="TAIR:AT1G34575.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LNL9" /translation="MRNPVSILSVIIFLLCNSMANSDILEESSILQCLSNHSVTSPPI SSVTYFPTNPSYTSILQSYIRNLRFTSATTAKPLFIVVPSHDSHIQASIICCKIHGLE MRIRSGGHDYDGLSYVSAAPFMILDMFNLRSIIVDMEDESAWVESGATLGELFYRIAE KSKNHGFPAGVCPTVGVGGHFSGGGYGNMMRKHGLSTDNIVDAKLVDANGRILDRESM GEDLFWAIRGGGGASFGVILSWKIKVVSVPEIVTVFRIEKTLEQGATDIVHKWQYIAD KIDENLFIRVVLLPVTKKHLQSIKAKFIALFLGNAEKLISLMNGTFPELGLSPENCVE MSWIESVLFWSNYPKGTSLEVLLNRHPQPEKYLKKKSDYVQEPISKKDLEGIWKKMIE LRRPALTLNPYGGKMSEISESETPFPHRAGNIYKIQYSVTWKEDGAEASDRSLDQITR IYDYMTPYVSKYPRSSYLNYRDVDIGINEIGNASYSEAKVWASKYFKGNFDRLVQVKS MVDPGNFFRYEQSIPSLTSWKSTMAE" gene 1153726..1157219 /locus_tag="TCM_027061" /note="dbxref CacaoGD:Thecc1EG027061" mRNA join(1153726..1154492,1154908..1157219) /locus_tag="TCM_027061" /product="FAD-binding Berberine family protein" /inference="alignment:exonerate- protein:2:ricco:30075.m001146" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027062t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s46690.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.94 coverage" CDS join(1154161..1154492,1154908..1156531) /locus_tag="TCM_027061" /note="paralog of Thecc1EG027062t1" /codon_start=1 /product="FAD-binding Berberine family protein" /protein_id="EOY25677.1" /db_xref="Phytozome:POPTR_0001s46690.1" /db_xref="TAIR:AT4G20840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5CB50" /translation="MSLPPPWLKTYNGILADGLIIPTTFKKKFKLSLRTMTNIKNLNQ NIPEKATIGHCNKHETYTEKLTQQQSRPLTPRILQLAASQQTLISFLHLLEASNLILG RGSVRMSASRKLSFFTPTDKKAMTMSLPLLLLAVVSITICSSVGASDSVYESFIQCLT SHSNPSDHVSNIVYSQSSSSYNSVLQAYIRNARFNTSATPKPVIIITPLQESHVSAAV ICSKKIGFQLKIRSGGHDFEGISYVSDKPFFILDMFNLRSISVNMADESAWVEAGATL GELYYRIWEKSKVHGFPAGVCPTVGVGGHISGAGYGNMVRKYGLSVDHVVDAKIVDVN GKILDRKGMGEDLFWAIRGGGGGSFGVILAYKIKLVPVPETVTVFKVERTLEQNATDV VYKWQSVAPTTDNNLFMRMLVQPVTLNKQKTIRISIYALYLGRADNLVSLLAKDLPEL GLKKENCLEMSWIDSALWWGSLNYGTSPNALLSRNYHVKFMKRKSDYVQTPIPKDGLE WLWKRMIELAEPGLVFNPYGGIMNEIKATDTPFPHRAGNLFKIQYSISWKETGMDADR KYRTLVKRLHSYMTGFVSKNPRSAYLNYRDLDIGISETWTYQEGKVYGQSYFNGNFER LVDVKSAVDPENFFRNEQSIPPRTSKA" gene 1157266..1166599 /locus_tag="TCM_027062" /note="dbxref CacaoGD:Thecc1EG027062" mRNA join(1157266..1157625,1164584..1166599) /locus_tag="TCM_027062" /product="FAD-binding Berberine family protein" /inference="alignment:exonerate- protein:2:ricco:30075.m001146.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027061t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s46690.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05178t00001" mobile_element 1159462..1159697 /note="source:scaffold_5_CACTA_0607 9587 9827" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1159698..1160257 /note="source:CACAO_on_E241_scaffold_112 2 764" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(1161477..1162124) /note="source:scaffold_5_CACTA_0603 1894 2546" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1162682..1162832 /note="source:CACAO_Mariner_E176_scaffold_6 8599 8740" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 1162711..1163286 /note="source:scaffold_4_CACTA_0510 2106 2671" /mobile_element_type="transposon:TIR/CACTA" CDS 1164756..1166351 /locus_tag="TCM_027062" /note="paralog of Thecc1EG027061t1" /codon_start=1 /product="FAD-binding Berberine family protein" /protein_id="EOY25678.1" /db_xref="Phytozome:POPTR_0001s46690.1" /db_xref="TAIR:AT4G20840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVG4" /translation="MPILMAPRLLLLLLFLVSFNFSLSWAASDPAYQSLFQCLSQSIP SDNVSSILFSNSNPSYASVLQAYIRNARFNTSSTPKPVIIITPLEEFHVSAAVICSQK VGFRLKIRSGGHDYEGLSYVFDEPFFVLDMFNLRSISVDMADESAWVGTGATLGELYY NIWEKSKVHGFPGGVCPTVGVGGHFSGAGYGTLLRKYGLTVDHIVDAKIVDVNGRILD RKGMGEDLFWAIRGGGAASFGVVLAYKIKLVPVPETVTVFRLERLLADNATDVALKWQ SVAPTTDDNLFMRMLLQPATRNRQRTLRVTVIALYLGDANSLVALLGKEFPELSLKKE NCTETTWIDSVLWWANFDFGTSPTALLDRNLNDADFLKRKSDYVQTPIPRDGLESLWE KMIELGKVGLVFNAYGGRMNEIKADETPFPHRAGNLYKIQYSVNWDEPGNEAEKNYTT QSRTLHDFMTQFVSKNPRSAYLNYRDIDIGVAENWTVEEGKVYGESYFNDNYERLVDV KTAVDPKNFFRNEQSIPPRTTRT" gene 1167353..1175024 /locus_tag="TCM_027063" /note="dbxref CacaoGD:Thecc1EG027063" mRNA join(1167353..1167654,1168369..1168413,1168889..1170870, 1174635..1175024) /locus_tag="TCM_027063" /product="Cactus-binding domain, C-terminal, Cactin, central region" /inference="alignment:exonerate-protein:2:frave:gene00942" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022366t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033725001" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g265t1" mobile_element 1167643..1168331 /note="source:scaffold_4_CACTA_0482 16784 17462" /mobile_element_type="transposon:TIR/CACTA" CDS join(1168380..1168413,1168889..1170639) /locus_tag="TCM_027063" /note="paralog of Thecc1EG022366t1" /codon_start=1 /product="Cactus-binding domain, C-terminal, Cactin, central region" /protein_id="EOY25679.1" /db_xref="Phytozome:GSVIVT01033725001" /db_xref="TAIR:AT1G03910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZWB1" /translation="MSPSSKAGPFKAMVRSGRNKSSRHSHSGRDSDDGFSGGGRSKKK RYGRNITEEEIAGYMAKKAQKKAMRAATKLKEQTVWGYSNDSNPFGDSNLSEKFVWRK QIERDIAQGVPLDSFSVKAEKKRQKERMGEIEKVKKRREERAVERAQHEEEVALLARE RARAEFQDWEKKEEEFLSDQSKIRSEIRMREDRTKPIDVLSKHLSGSDKPPYMVFKGL TVKEMEELRDDIIIHLDLDRATPTHIEYWEALLVVCDWELSEARNKDALDQARVRGEE PPAELLAEERRVPFSIEADVKNLLEGKTHRELEGLQSQIESQMRTGMAKVVEYWEAVL KRLHIFKAKACLKEIHAKMLSTHLQRLEQPSGLESDHGLGPGEEDSDHDVKDAETFSP QPVEQEAGSFSPQLLHGDENHEEAIDPEEDRAILEQQRRIREDNFELKAMKAMGAMEE GDAVFGSGAQVNLDSQVYWWRDKYRPRKPKYFNRVHTGYEWNKYNQTHYDPDNPPPKI VLGYKFNIFYPDLVDKTKAPAYTIEKDGNSSDTCIIRFHAGPPYEDIAFRIVDKDWEY SHKKGYKATFEHGVLHLYFNFKRYRYRR" mobile_element complement(1172114..1172518) /note="source:INTACT269_F1_scaffold_1-int 476 884" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1175071..1178352 /locus_tag="TCM_027064" /note="dbxref CacaoGD:Thecc1EG027064" mRNA join(1175071..1175349,1175644..1178352) /locus_tag="TCM_027064" /product="FAD-binding Berberine family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s46700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027069t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s16190.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g293t1" mobile_element complement(1175359..1175421) /note="source:INTACT319_F3_scaffold_1-int 5382 5445" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 1175977..1177620 /locus_tag="TCM_027064" /note="paralog of Thecc1EG027069t1" /codon_start=1 /product="FAD-binding Berberine family protein" /protein_id="EOY25680.1" /db_xref="Phytozome:POPTR_0011s16190.1" /db_xref="TAIR:AT2G34790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Y11" /translation="MNSHYPLKMMIPGSGMVTLTLFLFLSVSVCFSASNSTKESFLQC FSSHLPPSNITSDVIFSQNGSQYLSILRSSIRNLRFLNASKPQYLITPYSEAHIQAAV ICSKEYGLHVRVRSGGHDYEGLSYISDVPFIIIDLFQMRSISLDIKNEYAWVGGGATL GELYYSIAGSSNLHGFPAGSCPTVGVGGHFSGGGFGTIFRKYGLAADNVIDAKIVDVN GNILDRKSMGEDLFWAIRGGGAQSFGVIFSWKIKLVRVPPTVTVFSIRKTLEQGATKL LHKWQTVADKLHQDLFIHVVMGVPSANSKGNKTVRVSFDCLFLGTAERLLSLLQQQDG FPELGVTRDNCTEMSWIQSVLYFAGFSITESLDVLLNRTMSSTQFSKAKSDYVKEPIP ESGLEGLYKMLVEEENSILILTPYGGRMSQISSSEIPFPHRSGNLYGIQYILDWAAAE ETEKHLGWMRRLYKYMEPYVSNSPRAAYFNYRDLDLGRNNKRHTSYAQAAVWGFKYFN NNFKRLVRVKTSTDPDNFFWNEQSIPVLQSGSTKKGKKD" gene 1178406..1193209 /locus_tag="TCM_027065" /note="dbxref CacaoGD:Thecc1EG027065" mRNA join(1178406..1178702,1178912..1179013,1179496..1179576, 1179961..1180517,1187743..1188333,1188805..1188960, 1189233..1189388,1189580..1189654,1189760..1189915, 1190162..1190427,1191002..1193209) /locus_tag="TCM_027065" /product="Receptor like protein 15, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s02030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027070t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s01070.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc4580t1" mobile_element 1182865..1183309 /note="source:scaffold_4_CACTA_0482 17028 17474" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1182998..1183347) /note="source:scaffold_2_CACTA_0243 6511 6855" /mobile_element_type="transposon:TIR/CACTA" CDS join(1187979..1188333,1188805..1188960,1189233..1189388, 1189580..1189654,1189760..1189915,1190162..1190427, 1191002..1192387) /locus_tag="TCM_027065" /note="paralog of Thecc1EG027070t1" /codon_start=1 /product="Receptor like protein 15, putative" /protein_id="EOY25681.1" /db_xref="Phytozome:POPTR_0005s01070.1" /db_xref="TAIR:AT1G54470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N6Z2" /translation="MMESKWLWILFTVLLLEGWLCTDACWEHERIALLQLKPFFSPYI DLNNWVEVKGSDCCQWTRVECNTTTRRVIGLSLDFTRRRNDQYWYLNASLFLPFKELK SLSLEANGIAGFVENEGFESLSGLHNLEVLDLSGNSLKNDILVHMGSLSSLKTLDLGS NKLKGTVHLQGNETQLKLTNLEVLDLSYNLFSNNTFAFLPELSSLKTLYMWSNQLQGS IDIAGLNNLINLKKLELSWNKIESLQSFQDNGRQLKLTHLEELDLSGNLFNNSIFASL KGLSNLKSLRINYNKLKGSIDMKGWCDLRNLKQLDISVNALQGLPSCLGNLTSLRVLD ISDNQFTGNLTPLANLTSLKFLSISRNHFQVPLSFISLANLTDLKILLSDENKLDYIW MGITLLERYLILIVLMLGFLILSDIDISNNNLSGKLPRWIWNMSNLNSLALSNNHFEG SIPMELCNSGELLFLDLSQNNLSGSIPSCFNPPHIRHVHLSGNRLSGPLTGSLYNSSS LVTLDLTANNLAGNIPEWIDTLSALSVLLLKANHLEGRIPVQLCKLYSLSIIDLSQNK LSGPIPSCLGNLTSGSSFYKSSTYGGYYSFSDQDIRKYIGMETITDLSVPSHLYPSGY MEEWIEFTTKRGSYRYGGDILDYMSGIDLSCNKLTGQIPFELGNLSEIHSLNFSHNKL IGIIPSSFSNLKQIESLDLSYNNLSGTIPVQLVELNFLEVFSVAHNDLSGKTPERKAQ FGTFDESSYEGNPLLCGPPLHNNCSNTDSPPTVSTESDDEGEDNLLDMSAFCVSFLIA FVAVLLGIFSSLCINPYWRKTWFSFIEDCITTCRFSIVGNVFELYIFRRNA" mobile_element complement(1193690..1196395) /note="source:CACAO_M_E84368_F4_scaffold_10 10216 12916" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1196391..1198722) /note="source:CACAO_M_E84368_F4_scaffold_10 4505 6865" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1200848..1202161) /note="source:scaffold_10_CACTA_0130 8380 9608" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1202168..1202506) /note="source:scaffold_10_CACTA_0130 6254 6594" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1203047..1203090 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3820 3937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1203091..1203166) /note="source:CACAO_M_E14113_F106_scaffold_3 13816 13891" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1203094..1203183) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3088 3151" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1207268..1207872 /locus_tag="TCM_027068" /note="dbxref CacaoGD:Thecc1EG027068" mRNA join(1207268..1207444,1207771..1207872) /locus_tag="TCM_027068" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc4053t1" CDS join(1207273..1207444,1207771..1207790) /locus_tag="TCM_027068" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25682.1" /translation="MFLVVLLVSSSFYFCTSFYLSWFRLFQFVLSLCFPPCCEGQSIA AYGMLGAKELRLLGGDNVC" gene 1209276..1212820 /locus_tag="TCM_027069" /note="dbxref CacaoGD:Thecc1EG027069" mRNA join(1209276..1211771,1211969..1212070,1212553..1212820) /locus_tag="TCM_027069" /product="FAD-binding Berberine family protein" /inference="alignment:exonerate- protein:2:ricco:30075.m001149.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027064t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s16190.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1208t8" CDS 1209356..1210981 /locus_tag="TCM_027069" /note="paralog of Thecc1EG027064t1" /codon_start=1 /product="FAD-binding Berberine family protein" /protein_id="EOY25683.1" /db_xref="Phytozome:POPTR_0011s16190.1" /db_xref="TAIR:AT2G34790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Y11" /translation="MQHYPLKMMIPGSGMVPLKLFLFLSLSVCFSASNSTKESFLQCF SSHLRPSNITSDVIFSQNSSQYLSLLQSSIRNLRFLNASKPQYLITPYSEAHIQAAVI CSKEHGLHVRVRSGGHDYEGLSYISDVPFIIIDLFQMRSISLDIKNEYAWVGGGATLG ELYYSIAGSSNLHGFPAGSCPTVGVGGHFSGGGFGTIFRKYGLAADNVIDAKIVDVNG NILDTKSMGEDLFWAIRGGGAQSFGVIFSWKIKLVRVPPTVTVFSIRKRLEQGATKLL HKWQTVADKLHQDLFIHVVMGVPSANSKGNKTVRVSFDCLFLGTAERLLSLLQQPDGF PELGVTRDNCTEMSWIQSVLYFAGFSITESLDVLLNRTMSSTQFSKAKSDHVKEPIPE SGLEGLYKMLVEEKNSILILTPYGGRMSQISSSEIPFPHRSGNLYGIQYILDWAAAEE TEKHLGWMRRLYKYMEPYVSNSPRAAYFNYRDLDLGRNNKRHTSYAQAAVWGFKYFNN NFKRLVRVKTSTDPDNFFWNEQSIPVLQSGSTK" mobile_element 1216717..1217162 /note="source:scaffold_4_CACTA_0482 17028 17466" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1216858..1217209) /note="source:scaffold_2_CACTA_0243 6511 6857" /mobile_element_type="transposon:TIR/CACTA" gene 1218688..1223478 /locus_tag="TCM_027070" /note="dbxref CacaoGD:Thecc1EG027070" mRNA join(1218688..1219341,1219831..1219968,1220066..1220143, 1220241..1220396,1220588..1220662,1220768..1220923, 1221035..1221109,1221196..1221217,1221513..1223478) /locus_tag="TCM_027070" /product="Receptor like protein 15, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400052515" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045041t1" /inference="similar to AA sequence:Phytozome:POPTR_0027s00410.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS join(1218987..1219341,1219831..1219968,1220066..1220143, 1220241..1220396,1220588..1220662,1220768..1220923, 1221035..1221109,1221196..1221217,1221513..1223337) /locus_tag="TCM_027070" /note="paralog of Thecc1EG045041t1" /codon_start=1 /product="Receptor like protein 15, putative" /protein_id="EOY25684.1" /db_xref="Phytozome:POPTR_0027s00410.1" /db_xref="TAIR:AT2G25470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SZM4" /translation="MMESKWLRILLTVLLLEGWLCTDACWEHERIALVQLKPFFNYYY DLNNWVEVKGSDCCQWTRVECNTTTRRVIGLSLDFTRRRNDQYWYLNASLFLPFKELK SLSLEANGIAGFVENEGLHNLEVLDLSGNSLKNDILVHMGSLSSLKTLDLGSNKLKGT VHLQELNNLTNLKNLYLQYNSIESLQPLYQGNETQLKLTNLEVLDLSYNLFSNNTFAF LPELSSLKTLYMWSNQLQGSIDIAGLNNLINLKKLDLSWNKIESLQSFQDNGRQLKLT HLEELDLSDNLFNNSIFASLKGFSNLKSLRINNNKLKGSIDMKDLSAFTNLEELYMSG NELNELVTHKVIRQIYTCDFSYNKFNGTVPFWLLENNTKLEALFLMGNSFTGPLQFPP IPHPHVSSIDISNNKIQAQIPADICSTFPHLERLLLSMNTFKGNIPPCLGGMSHLSLL DLSTNQLSGGVPEELSMSSSLQILRLSNNNLTGKIVPTIFNSNLLLELYLDGNNFVGK IPDIDSLNVGFPYFLSVIDIRNNNLSGKLPRWIWNMSLISLALSNNHFEGSIPMELCN SDELRFLDLSQNNLSGSIPSCFNPPYIEHVHLSGNRLSGPLVGSLYSSSSLVTLDLTA NNLTGNIPEWIDTFSALNVLLLKANHLDGRIPVQLCKLYYLSIIDLSQNKLSGPIPSC LGNLTFGSSFNKSSAYGGDYSFLEQDMRKYIGMEMSMDQSVPSHLYPSSYMEEWIEFT TKRRSYRYEGDILDYMSGIDLSCNKLTGRIPFQLGNLSEIHSLNFSHNKLIGIIPSSF SNLKQIESLDLSYNNLSGRIPVQLVELNFLEVFSVAHNHLSGKTPERKAQFGTFDESS YEGNPLLCGPPLHNNCSNTDLPPTVSTESDDEGEDNLLDMSAFCVSFLISFAAVLLGI FSSLCINPYWRKTWFSFIEDCTTTCRFSIVGNVFELYIFRRNAWV" mobile_element 1223394..1224682 /note="source:CACAO_M_E44294_F10_scaffold_6 1 1289" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1224783..1227343 /note="source:CACAO_M_E44294_F10_scaffold_6 1290 3850" /mobile_element_type="retrotransposon:LTR/Copia" gene 1228314..1231141 /locus_tag="TCM_027071" /note="dbxref CacaoGD:Thecc1EG027071" mRNA join(1228314..1228477,1228687..1229112,1229210..1229330, 1230192..1230295,1230634..1230735,1230818..1231141) /locus_tag="TCM_027071" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(1228388..1228477,1228687..1229112,1229210..1229330, 1230192..1230295,1230634..1230735,1230818..1230913) /locus_tag="TCM_027071" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25685.1" /translation="MAPAMKEKKIVLLPDDVIIEIMARLPPKSIVLVTVYYAIVVSRK NFYLMESKYKCSCRNYPSLFHLFSTTDSNCPGNSSSSDNPSSLSSYLSNMKAAVKQYQ KERLAAPFSRNRTNPSVPASKPILTSASSEEIRKNLSKFRRRPAVPPPTDASATPSQS QPPISLQELYKRCGSLTEKETESPTHGVDFKDLREGLSRLMMSEDEKQRRTSRKDCLG VAGPMACAFQTIKPLLIKFSDSYEALNYTANLTDLKAEIFHVLFVLEERLGWLFWIPS KQNNKVTKFIGGNNFTIAWRTSGALLQLGKALANME" mobile_element 1232373..1232573 /note="source:CACAO_M_E69938_F9_scaffold_9 3535 3746" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1232574..1235261 /note="source:CACAO_M_E44210_F112_scaffold_5 10011 12913" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1236163..1236705 /note="source:CACAO_M_S_E66749_F19_scaffold_6 1 543" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1236193..1243763 /locus_tag="TCM_027072" /note="dbxref CacaoGD:Thecc1EG027072" mRNA join(1236193..1236494,1241621..1243763) /locus_tag="TCM_027072" /product="FAD-binding Berberine family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027074t2" /inference="similar to AA sequence:ricco:30075.m001153" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g376t2" mobile_element 1240862..1240921 /note="source:INTACT690_F13_scaffold_1-int 7044 7103" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 1241738..1243378 /locus_tag="TCM_027072" /note="dbxref ricco:30075.m001153; paralog of Thecc1EG027074t2" /codon_start=1 /product="FAD-binding Berberine family protein" /protein_id="EOY25686.1" /db_xref="TAIR:AT1G30760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZA3" /translation="MAFPRIPILLIVLFLLSSSSSGTASFCSKCKRPTSTQIQEQFLQ CFDANSEFDIPLSTAFFTPKNASFTSVLQSTAQNLRYLVPSMPKPEFIITPLYESHVQ AAVICSKELGIHLRVRSGGHDYEGLSYVSEIESPFIIVDLSRLRSIKVDIEDNSAWVE AGATTGEVYYRISEKSKTHGFPAGLCTSLGIGGHITGGAYGTIMRKYGLGADNVVDAR IVDASGRVLDRAAMSEDLYWAIRGGGGASFGIILAWKIKLVPVPETVTVFTVTKSLEQ GATKILYKWQQVADELDEDLFIRVIIQGANPGNSGGKTVTTSYNALFLGDAERLLQVM RQSFPELGLTRKDCIETSWIKSVLYIAGFPSNTPPEVLLQGKSLFKNYFKAKSDFVKE AIPETALEGLWKRLLEEDNPLTIWNPYGGMMGKISESEIAFPHRKGNKFMIQYLTLWQ DGDKNASKHMDWIRRLHNYMAPYVSRFPRGAYVNYRDLDLGMNKNINTSFIQASVWGV RYFKDNFNKLVKVKTKVDPDNFFRHEQSIPPLPVEARF" gene 1243806..1248046 /locus_tag="TCM_027073" /note="dbxref CacaoGD:Thecc1EG027073" mRNA join(1243806..1243853,1245608..1246165,1246228..1248046) /locus_tag="TCM_027073" /product="FAD-binding Berberine family protein, putative" /inference="alignment:exonerate- protein:2:frave:gene20173.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027072t1" /inference="similar to AA sequence:Phytozome:Glyma09g03090.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc274t2" CDS join(1245704..1246165,1246228..1247172) /locus_tag="TCM_027073" /note="paralog of Thecc1EG027072t1" /codon_start=1 /product="FAD-binding Berberine family protein, putative" /protein_id="EOY25687.1" /db_xref="Phytozome:Glyma09g03090.1" /db_xref="TAIR:AT1G30760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZA3" /translation="MAFPSTSILSLLLVLLSASWATSTSIQENFIQCLDDNSEHFIPT SAVCAQNNSSLTSVLNSTAQNLRYLEPSVPKPQFIFTPLIESHVQAAVICAKKLGIHL KFRSGGHDYEGLSYASKIETPFIMVHLARLRSINVDIDDNTACVEAGATIGEPRHWGT HHGRCIWYHDEKYGLGADNVIDARIVAVRGRVLDRAAMGEDLFWAIRGGGEASFGIIL QWKIKLVPVPETVTVFTVTKSLEQGATKILYRWQQVADKLDEDLFIRVIIQGANAGKN GGKTVTTSYNALFFDDAEGLLQVMGQSFPELGLTRKDCIETSWIKSVLYIAGYPTITP PETLLHGKSSFKVYLAKSDFVKEAIPGTALEGLWKRLLEEDNPLTIWNPYGGLMGTIS ESEIPFPHRNGNKFMIQYLTAWQVGDKSASKHMDWIRRLHSYMAPYVSMFPRAAYVNY RDLDLGMNKNINTSFIRT" mobile_element 1247165..1247246 /note="source:scaffold_1_CACTA_0016 6348 6437" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1247641..1247735) /note="source:CACAO_M_E5326_F22_scaffold_2 3433 3509" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1247735..1252110 /locus_tag="TCM_027074" /note="dbxref CacaoGD:Thecc1EG027074" mRNA join(1247735..1247820,1249993..1252081) /locus_tag="TCM_027074" /product="FAD-binding Berberine family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30075.m001151" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027072t1" /inference="similar to AA sequence:Phytozome:Glyma09g03090.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g420t1" mRNA join(1249771..1249884,1249993..1252110) /locus_tag="TCM_027074" /product="FAD-binding Berberine family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30075.m001151" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027072t1" /inference="similar to AA sequence:Phytozome:Glyma09g03090.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g420t1; alternateUTRof:Thecc1EG027074t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g420t1" CDS 1250281..1251873 /locus_tag="TCM_027074" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG027072t1" /codon_start=1 /product="FAD-binding Berberine family protein isoform 1" /protein_id="EOY25688.1" /db_xref="Phytozome:Glyma09g03090.1" /db_xref="TAIR:AT1G30760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZA3" /translation="MALSSISILPLLLVLLSASWATSASIQDNFIQCLDDNSEQVIPI SAVCAQNNSSFTSVLNSTAQNLRYLEPSVPKPQFIFTPLNESHVQAAVICAKKLGIHL RFRSGGHDYEGLSYASEIETPFIMLDLARLRSVNVDIDDNTAWVQAGATIGEVYYRIS ETSKTHGFPAGLCSSLGIGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKVLDRAA MGEDHFWAIRGGGGASFGIILAWKIKLVPVPETVTVFTVPKTLEQGATKILYRWQQVA DKLDEDLFIRVIIQVTKAGQKGERTVTTAYNALFLGDADRLLQVMNQSFPELGLTRKE CIETSWIKSVLYIAGYPSDTPPEVLQQGKSLFKNYFKAKSDFVQRPIPETGLEGLWKR LLQEDSPLMIWNPYGGMMANISESAIAFPHRKGNLFKIQYVTSWYEGSQDATTKHTDW IRGLYDYMAAYVPTSPRAAYVNYRDLDLGINDKTNTSLSQARVWGTKYFKGNFDRLVK VKSKVDPDNFFRHEQSIPPALV" CDS 1250281..1251873 /locus_tag="TCM_027074" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG027072t1" /codon_start=1 /product="FAD-binding Berberine family protein isoform 1" /protein_id="EOY25689.1" /db_xref="Phytozome:Glyma09g03090.1" /db_xref="TAIR:AT1G30760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZA3" /translation="MALSSISILPLLLVLLSASWATSASIQDNFIQCLDDNSEQVIPI SAVCAQNNSSFTSVLNSTAQNLRYLEPSVPKPQFIFTPLNESHVQAAVICAKKLGIHL RFRSGGHDYEGLSYASEIETPFIMLDLARLRSVNVDIDDNTAWVQAGATIGEVYYRIS ETSKTHGFPAGLCSSLGIGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKVLDRAA MGEDHFWAIRGGGGASFGIILAWKIKLVPVPETVTVFTVPKTLEQGATKILYRWQQVA DKLDEDLFIRVIIQVTKAGQKGERTVTTAYNALFLGDADRLLQVMNQSFPELGLTRKE CIETSWIKSVLYIAGYPSDTPPEVLQQGKSLFKNYFKAKSDFVQRPIPETGLEGLWKR LLQEDSPLMIWNPYGGMMANISESAIAFPHRKGNLFKIQYVTSWYEGSQDATTKHTDW IRGLYDYMAAYVPTSPRAAYVNYRDLDLGINDKTNTSLSQARVWGTKYFKGNFDRLVK VKSKVDPDNFFRHEQSIPPALV" mobile_element 1252605..1252742 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3176 3278" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1252676..1252770) /note="source:CACAO_M_E3248_F5_scaffold_1 3659 3720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1252991..1253522) /note="source:scaffold_5_CACTA_0614 24 444" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1253634..1253875) /note="source:scaffold_5_CACTA_0614 1 222" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1256759..1257109) /note="source:scaffold_2_CACTA_0248 11788 12157" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1257115..1258290 /note="source:INTACT566_F257_scaffold_7-int 244 1432" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1258291..1259451 /note="source:CACAO_M_E44297_F5_scaffold_6 1 1128" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1259452..1259636) /note="source:CACAO_M_S_E66514_F257_scaffold_5 4309 4494" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1259629..1261182) /note="source:CACAO_M_S_E66514_F257_scaffold_5 1113 2669" /mobile_element_type="retrotransposon:LTR/Copia" gene 1261772..1262754 /locus_tag="TCM_027075" /note="dbxref CacaoGD:Thecc1EG027075" mRNA 1261772..1262754 /locus_tag="TCM_027075" /product="Vacuolar iron transporter family protein" /inference="alignment:exonerate-protein:2:frave:gene22298" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007546t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029755001" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g277t1" CDS 1261860..1262540 /locus_tag="TCM_027075" /note="paralog of Thecc1EG007546t1" /codon_start=1 /product="Vacuolar iron transporter family protein" /protein_id="EOY25690.1" /db_xref="Phytozome:GSVIVT01029755001" /db_xref="TAIR:AT3G43660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2C3" /translation="MAALRTCERPSLSNLDMSIHVANDAQKNQIQVPTAEDEFDYSQR AQWLRAAVLGANDGLVSVASLMMGVGAVKDDIKAMLVAGFAGLVAGACSMAIGEFVSV YTQRDIEVAQMKRERRKRESSGDYEQETEREKLPNPGQAAIASALAFSIGAVVPLLAA AFIRQKKVRLAVVAAVASLALAVFGATGAVIGRTPVVSSSFRVLIGGWMAMAITFGLT KLVGTAGL" gene complement(1262757..1267181) /locus_tag="TCM_027076" /note="dbxref CacaoGD:Thecc1EG027076" mRNA complement(join(1262757..1262838,1265055..1265123, 1266976..1267181)) /locus_tag="TCM_027076" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS complement(join(1262824..1262838,1265055..1265123, 1266976..1267116)) /locus_tag="TCM_027076" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25691.1" /translation="MVILFLVKTKVSTELKLGLSLKLGSSNITLTMLQVATQVTLEFV AYCDYLFIFGQLAFKLRQLVVSMEEVKWKM" mobile_element complement(1264119..1264170) /note="source:CACAO_Mutator_E1149_scaffold_5 4716 4768" /mobile_element_type="transposon:TIR/Mutator" mobile_element 1264141..1264190 /note="source:CACAO_M_E5899_F5_scaffold_2 20740 20789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1265409..1265489) /note="source:CACAO_M_S_E34046_F60_scaffold_4 15583 15667" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1267276..1277749 /locus_tag="TCM_027077" /note="dbxref CacaoGD:Thecc1EG027077" mRNA join(1267276..1267368,1272029..1272378,1275828..1277749) /locus_tag="TCM_027077" /product="FAD-binding Berberine family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g021700.1.10" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027074t2" /inference="similar to AA sequence:Phytozome:POPTR_0011s16570.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc148t2" mobile_element 1267687..1269034 /note="source:INTACT157_F155_scaffold_1-int 7310 8631" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1269793..1271648) /note="source:INTACT61_F128_scaffold_2-int 2952 4813" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 1275866..1277482 /locus_tag="TCM_027077" /note="paralog of Thecc1EG027074t2" /codon_start=1 /product="FAD-binding Berberine family protein, putative" /protein_id="EOY25692.1" /db_xref="Phytozome:POPTR_0011s16570.1" /db_xref="TAIR:AT5G44440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LNL9" /translation="MSKMRLDGQLLVFTIFPILFFVSSASPDLLFYGAFYQCIAFHSP FLTQVHDLLHSAHSPEYLPILQSSIQNLRFNSSVGQRPRYIITPRCADHVRAAVLCSK YHGLQVRIRSGGHDYEGLSYKANTPFVLIDLFYLRKVTVDLKSKTAWVGAGATLGELY YQIANRSQTLGFPAGICSSIGVGGHLSGGGQGTLMRKFGLAADNIVDAILVNADGNIL DRRAMGEDLFWAIRGGGAASFGVIVEWKVKLVPVPPKVTAFNVPITLQQGATSLIHRW QQIATRLPEDLFIRILLTVGKESDGRTTVRAIFNSLYLGPLHQLFPLIDEKFPELSLH LQEEHCKELSWIESVLFLDRGFAKGKNVDVLTDRKNNLQSFFIAKSDFVNKPITKRGL KAIWNVMQEGEAGIMIWDPYGGKMDEIPQDATPFPHRAGTLYNIQYFTNWKEGGPDVE TKRTDWINKLYNFMEPYVSQNPRAAYLNYRDLSLGINNKYGSPSYLRSKVWGEKYFKN NFERLARVKHAVDPGNFFRNEQSIPPYSGF" mobile_element complement(1277611..1279488) /note="source:CACAO_hAT_E410_scaffold_1 621 2487" /mobile_element_type="transposon:TIR/hAT" mobile_element 1279650..1287211 /note="source:INTACT36_F116_scaffold_6-int 1 7562" /mobile_element_type="retrotransposon:LTR/Copia" gene 1287107..1289895 /locus_tag="TCM_027078" /note="dbxref CacaoGD:Thecc1EG027078" mRNA join(1287107..1287476,1287595..1287692,1288514..1288635, 1288978..1289214,1289310..1289895) /locus_tag="TCM_027078" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(1287280..1287476,1287595..1287692,1288514..1288635, 1288978..1289214,1289310..1289402) /locus_tag="TCM_027078" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25693.1" /translation="MASSLHKEQEILQHFIGCPNIVRCFGGFTSVECERKIFNLFLEY ASGGCLLDLMENSGKIPERHVKTVNIKLKVSIPRGCHDTFRREWRGSLLADRMLDCGL SEDSSYTDSRTNINYISNATYIQTGSSKRILPEFRAEFHQRRSLKLTPAKHTNYRIHR KVLQFTHAQVQRITNNFKTVLDKGGFGTVFHSYLDDTQVVVKMLSPSSVQRHKQFHAE VELLLRVNHRNLTALIGYCGDGINMELIYG" gene 1290287..1295566 /locus_tag="TCM_027079" /note="dbxref CacaoGD:Thecc1EG027079" mRNA join(1290287..1291180,1291992..1292057,1292162..1292211, 1293348..1293525,1293836..1295566) /locus_tag="TCM_027079" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s13360.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046355t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012686001" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(1290317..1291180,1291992..1292057,1292162..1292211, 1293348..1293525,1293836..1294786) /locus_tag="TCM_027079" /note="paralog of Thecc1EG046355t1" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY25694.1" /db_xref="Phytozome:GSVIVT01012686001" /db_xref="TAIR:AT2G42550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HR94" /translation="MEVKGVRIRVLGKGTYGVVYLLKTNIPTSQLYAVKSADEEMAST LHKEQEILQQFSGCPNIVRCFGGFTSVECGRKIFNLFLEYASGGCLADLMKEYGGKIP ERHAKFYARMILEGLVDIHRKGYIHSDLKPRNILVFPSQDGISLDTLKIADFGLVKKY GVEDTNAWEYGFRGTAPYMSPESIIGYITGALDIWSLGCIMVEMLTGKLPLAFRDLKD LRDKLLRGESPNIPENMSSMGKNFLMKCFARDPNERWTASMLLSHPYLLPEHTFSLPV TGFLQCNPSLASKSNASFGLYSGTVCPAPLIVTKAWLPVYGTHVMVSTENKTGVFAPT IHRNVKCSNILLTESLHAKLSDFRLSKAFTLEGDSHVYTVVADTPGYVDPDKLYAVKS ADEEMASSLHKEQEILQQFVGCPNIVRCFGGFTSVECKRKIFNLFLEYAPGGCLLDLM KEYGGKIPERHAKYYARMILEGLVDIHRKGYIHSDLKPGNILVFPSQDGTALDTLKIA DFGLVRKYGVKDTNDWEYGFRGTAPYMSPESIIGYITGALDIWSLGCIMVEMLTGKLP LAFRDLKDLRDKLLRGESPNIPENMSTMGKNFLMKCFARDPNERWTASMLLSHPYLLP EHTFSQPATGFLKCNPSLASVNFQEAAAFHSPRGYELFPSGTRKILDDLFRMQLIKQV TDMKLGVWCMQRNQHETSKL" mobile_element complement(1291764..1291910) /note="source:scaffold_2_CACTA_0256 16286 16426" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1295199..1295256 /note="source:scaffold_2_CACTA_0243 15916 15974" /mobile_element_type="transposon:TIR/CACTA" gene 1295383..1297830 /locus_tag="TCM_027080" /note="dbxref CacaoGD:Thecc1EG027080" mRNA join(1295383..1295775,1295855..1297830) /locus_tag="TCM_027080" /product="FAD-binding Berberine family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s16440.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027074t2" /inference="similar to AA sequence:Phytozome:POPTR_0011s16440.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g283t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g285t1" CDS join(1295638..1295775,1295855..1297408) /locus_tag="TCM_027080" /note="paralog of Thecc1EG027074t2" /codon_start=1 /product="FAD-binding Berberine family protein, putative" /protein_id="EOY25695.1" /db_xref="Phytozome:POPTR_0011s16440.1" /db_xref="TAIR:AT4G20860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKV2" /translation="MIAILLFDVTIKFCRGDKPTLEPGLLLKRSTLSKNVQFKYILKT HQAISDSIHGDFTQCMSTQFRDYTRSFEIIFTSDSPLYSSILKSTLQNMRWLNSSTST PLLIITPFHESEIQAALVCSKKLGLQIRVRSGGHDYEGLSYSCKTPFIIIDLTNLRAI EINVEEETAWVQSGATLGELYYAIGKKSSIHAFPAGLCPTVGVGGHFSGGGLGTLMRK YGLAADNVLDAYLMDVNGRILDRKAMGENLFWAIRGGGGASFGIILSWKIRLARVPQT VTAFTISKTIEQGATKLVHRWQYIADKLPEDLFIRVIIQDVQGSGHRNNKTIQASFNS LFLGEIDRLIPFMNESFPELGLLAEDCIQMSWVESTLYFAGFQQGQPLEVLLDKTQLY KSSFKAKSDFVREPIPEEGLEGIWKMFLAEEMVFMIMDPFGGKMNTIPVSSVPFPHRK ENLYNIQYIVKWQVNDVKASHKHIHWIRMLYEYMSPYVSKGPRAAYLNYRDLDLGTNS QGSTSYAEASEWGKKYFKGNFKRLARVKSMTDPHNFFRNEQSIPPLPTPGKKKYK" gene complement(1297935..1307088) /locus_tag="TCM_027081" /note="dbxref CacaoGD:Thecc1EG027081" mRNA complement(join(1297935..1299224,1300298..1300410, 1300802..1301622,1301746..1301870,1302035..1303569, 1304262..1305928,1306219..1306333,1306436..1306500, 1306677..1307088)) /locus_tag="TCM_027081" /product="Maternal effect embryo arrest 22, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01035592001" /inference="similar to AA sequence:Phytozome:POPTR_0001s46800.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g384t4" CDS complement(join(1298927..1299224,1300298..1300410, 1300802..1301622,1301746..1301870,1302035..1303569, 1304262..1305928,1306219..1306333,1306436..1306498)) /locus_tag="TCM_027081" /codon_start=1 /product="Maternal effect embryo arrest 22, putative" /protein_id="EOY25696.1" /db_xref="Phytozome:POPTR_0001s46800.1" /db_xref="TAIR:AT2G34780.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGK0" /translation="MAADVPDAPEEDVQVSPCCQVWKNKYSKAEKGRICLKQAVRLLE KGCDDIQAQNLTLKKAYEEEQARAKVEKEGREKESALRVSLENELCALKSEISNLKQK GVSDAEDKTDEMKLLKAIVSDREKEINWLKELVEKEKKRADLEKKNAAAEKRKAAEAS KDAETEKGKGSEERRLADIERKKAEDYRTQLEALRKEVNEAKSKLVSEKSKFDKATKQ LQEEKKKTVEQRKRADLYMAKAEEQRKIAEETMKKAAEARKRADLEIDQAEEQRKIAE ETKKKAVEARKHADMEMAKVEEKRKLAEETKKKGKLAEETKKKAVEERKHADMEIAKA EEQRKLAEETKKKAVEERKRANLEVANVGEQKKIAEATKEAVEEKLHADNLFKQLEEA RRRNGELEKKLHELSGSRNLVEGPFDQPDRKTSAEAATKKTAELEVLMKDADKSKAVS KLLHSEEVEKEKAIFERKRADSEMRKAEKKRKLVEENTKKAMEEKLRADHLLKQLEDA RLKIDELKKQMNELSSSRKTVDALVFSSDKGISAEVAKVKLLKKQLKFEKQRVKHAKD VAKLEKSRSNLLQQKVGCMKLELVQFINRFDALDKCFSTPTEGIDDMEKAGDFSSMQW LKVKENLRSLNFCQTCLQTENQLLKTMCMDTTPSNPLGETFQHDAHLLPIQGGNCAES ITGINSKLESLLGGSNRKMLQSSAINSSTASFSDRQLVGSQERGAFSVTTSAKLGEEI LNVEQTVSGISGEVTKNRCNENVAVVAENSVRSPLPVDPLGRVNGCGKKRKRILNAVE SIELLCFESKKLHLQLEDKLSALHGVVRGQMDKPTEEAKLLRSNLQDIAYAVHDRSHK KRKTSHEETVAMQQSCDGLQLTQMQNSLEPLEDANVFRPASQPANNLMNSTKVSGEAI CDPHTIDPKIMVGFKEVVNGNYMKLLDLDDAVEEECYRMAADMPVSPTLPEIEFPGVE TFQVDQFTHTHDENCEGFSHEDENVASSDSFDVINMEKGSNKLPCNRADTSLKVLQHE NECSHGTIDIPRSNENGICSTMPAGRACLSHPQNSGVFERIPKYCVVFSDIKDASSIS RIFFATKSCMAQCSLPAQTEFVVHRILHALKLEENLLAKEKVCVFFSLVLLNLCTATS GKCSLIRDLIPCLHLFAEHINAVMSDAEPRSVVAELCLDELLSVIEDFLIEGRILFYT DLSSESSSECDSRIHVTVDGSDVILLHEAASADLLVAGSIILGSICAAADRTGFMCEA VYNIFRMHRYDISVALLVLHVFAYVGGDKIFTSRKYSLTMTVLKSIVVFLEREHAPVA TVTLSLVAEVQAECHACVGCPFSKDVLSVDIVVSLLFEKLQNYVQSGIMHQEVTANSS NSNVMSIQDKTEQNLGCVVDMNCDVSCCLDKYSVPGKQSGSFVAGTLCHISDVLSLIE LLACNMSWVWTCEKIIAQLLSMLESPGLENLTLAIIILLGQLGRLGVDAVGYEDKEVE NLRVKLSAFLFRETTIRAGLPIQLATVSALLGLISLDIEKVIQKNVTLPVMSGQFVHA DLIRNWFPLLTEEQRAMSIRLFQSVD" gene complement(1307588..1310838) /locus_tag="TCM_027082" /note="dbxref CacaoGD:Thecc1EG027082" mRNA complement(join(1307588..1308135,1308361..1308507, 1308726..1308831,1308996..1309192,1309281..1309373, 1309727..1309785,1310437..1310666,1310751..1310838)) /locus_tag="TCM_027082" /product="Fatty acid hydroxylase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400036594.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026927t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400036594" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g352t1" mRNA complement(join(1307588..1308135,1308361..1308507, 1308726..1308831,1308996..1309192,1309281..1309373, 1309727..1309785,1310341..1310666,1310751..1310838)) /locus_tag="TCM_027082" /product="Fatty acid hydroxylase 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400036594.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026927t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400036594" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:PASA:2:TSA:puevd3b026183t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g352t1" CDS complement(join(1308043..1308135,1308361..1308507, 1308726..1308831,1308996..1309192,1309281..1309373, 1309727..1309785,1310437..1310666,1310751..1310794)) /locus_tag="TCM_027082" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026927t2" /codon_start=1 /product="Fatty acid hydroxylase 1 isoform 1" /protein_id="EOY25697.1" /db_xref="Phytozome:PGSC0003DMP400036594" /db_xref="TAIR:AT2G34770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0ILR7" /translation="MRLQSWIVKVPGWQPSSPTLPHELYPQISSTFFFSLFIPVSSLV HCSKTKPKKPQQKAPKNHLNTVALVPVVLFFIEKLRGFGLDPTHIVLVAKMVAQEFTV DLNKPLVFQVGHLGETYQEWVHQPIVSKEGPRFFESDFWEFLTRTVWWAIPAIWLPVV CWCISMSIRMGHPLPQIALMVGFGIFVWTFLEYTLHRFLFHIETKSYWGNTVHYLLHG CHHKHPMDGLRLVFPPAATAVLCIPFWNLVKLLATPSTTPALFGGGLLGYVMYDVTHY YLHHGQPTKHVAKSLKKYHLNHHFRIQNKGFGITSAFWDRVFRTLP" CDS complement(join(1308043..1308135,1308361..1308507, 1308726..1308831,1308996..1309192,1309281..1309373, 1309727..1309777)) /locus_tag="TCM_027082" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026927t2" /codon_start=1 /product="Fatty acid hydroxylase 1 isoform 2" /protein_id="EOY25698.1" /db_xref="Phytozome:PGSC0003DMP400036594" /db_xref="TAIR:AT2G34770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0ILR7" /translation="MVAQEFTVDLNKPLVFQVGHLGETYQEWVHQPIVSKEGPRFFES DFWEFLTRTVWWAIPAIWLPVVCWCISMSIRMGHPLPQIALMVGFGIFVWTFLEYTLH RFLFHIETKSYWGNTVHYLLHGCHHKHPMDGLRLVFPPAATAVLCIPFWNLVKLLATP STTPALFGGGLLGYVMYDVTHYYLHHGQPTKHVAKSLKKYHLNHHFRIQNKGFGITSA FWDRVFRTLP" mobile_element complement(1311510..1311698) /note="source:scaffold_7_CACTA_0795 2849 3043" /mobile_element_type="transposon:TIR/CACTA" gene 1311903..1312818 /locus_tag="TCM_027083" /note="dbxref CacaoGD:Thecc1EG027083" mRNA 1311903..1312818 /locus_tag="TCM_027083" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014098.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027084t1" /inference="similar to AA sequence:ricco:30147.m014098" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc3496t1" CDS 1311971..1312624 /locus_tag="TCM_027083" /note="dbxref ricco:30147.m014098; paralog of Thecc1EG027084t1" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY25699.1" /translation="MSDDFETCCHVWDVDWEAPEDESFPCATFSINIQARFISASVDD DDDEEEEDHEPCFTEPESVVFEKTEEVRVDLLMNENDNVSTVRDMLVSMDVPVHDFMV DKILACAHRMAMAQRYRTRKVLRMRVEIEAVVDELPDHDDDEEEEDESEESETAALMV EKLRKVVVDRPNSCCTICLEDFLVGSEATSMPCSHVFHHHCILPWLCKKKLCPLCRS" mobile_element complement(1313848..1314417) /note="source:CACAO_MITE_S250_scaffold_10 1 560" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(1315333..1315492) /note="source:scaffold_7_CACTA_0795 2849 3009" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1315484..1315538) /note="source:scaffold_10_CACTA_0137 2738 2793" /mobile_element_type="transposon:TIR/CACTA" gene 1315954..1316900 /locus_tag="TCM_027084" /note="dbxref CacaoGD:Thecc1EG027084" mRNA 1315954..1316900 /locus_tag="TCM_027084" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014098" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027083t1" /inference="similar to AA sequence:ricco:30147.m014098" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g336t1" CDS 1316020..1316673 /locus_tag="TCM_027084" /note="dbxref ricco:30147.m014098; paralog of Thecc1EG027083t1" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY25700.1" /translation="MSDDFETCCHVWDVDWEAPEDESFPCATFSINIQARFISAFVDD DDDEEEEDHEPCFTEPESVVFEKTEEVRVDLLMNENDNVSTVRDMLVSMDVPVHDFMV DKILACAHLMAMAQRYRTRKVLRMRVEIEAVVDELPDHDDDEEEEDESEESETAALMV EKLRKVVVDRPNSCCTICLEDFLVGSEATSMPCSHVFHHHCILPWLCKKKLCPLCRS" mobile_element 1316793..1316865 /note="source:scaffold_8_CACTA_0863 5132 5203" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1317692..1317749 /note="source:CACAO_Helitron_SS_E51_scaffold_6 388 445" /mobile_element_type="transposon:Helitron" gene 1318101..1327997 /locus_tag="TCM_027085" /note="dbxref CacaoGD:Thecc1EG027085" mRNA join(1318101..1318430,1318968..1319011,1319082..1319616, 1320463..1320647,1321079..1321159,1321231..1321272, 1321372..1321416,1323608..1323694,1324080..1324206, 1324346..1324426,1325678..1325803,1326097..1326161, 1326786..1326891,1327267..1327997) /locus_tag="TCM_027085" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30160.m000429" /inference="similar to AA sequence:ricco:30160.m000429" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc3249t1" CDS join(1318256..1318430,1318968..1319011,1319082..1319616, 1320463..1320647,1321079..1321159,1321231..1321272, 1321372..1321416,1323608..1323694,1324080..1324206, 1324346..1324426,1325678..1325803,1326097..1326161, 1326786..1326891,1327267..1327388) /locus_tag="TCM_027085" /note="dbxref ricco:30160.m000429" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25701.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0T9" /translation="MADFTKNLIMSRCSQSVPLSESAALTVLPQNSFLFSFPNLPLLS PSLLHHELSQTTFSGIIYSYLREPLLQWPKISQSTSDIGNSRLENLDLDISEKSMESP LDDSVSDVIHQPSSQASYESWSNVVKPTASAFPNIQPESSFHFGDPGDSIKDSSSGTS EMADSYHSSLSLMRPEIEKSYRVNKTKTSLSRIPLPQSAASFYNGHSPRMEIVESCES IKSLNMFLKSKRDEVDAGVPGRFLHTVIGQDVSDVGSVAAAIMYAFYLNGMLESHQFC TVPVINMKRTELNSHAELKWLLDSCQIDQSSLIFINEIDLSYYDLFGSLKLVLLNGSK LPTKQEALKESVIEIFNCPKGERVYPWVEKVTVGQECSPCTLIAEKFAMTSPEILAGQ GFSRLLLAGILLDTGNLSSPQCTSKDKYMATLLINGAGRFGCNGLYQILRYKLYDVSE LGVADILGKDFKKWTRVGKLDNAGSRLMVSHVGMSSIGISLQQLLAHGNASTREIRLF QQMEKLRLLMIVSGYYDQQQNFKREILVSTESVEVMKNSLFFFNSNASQLPLKVIYQP ELGEDMRAFEIDKVTSRKTIERLLEEFGGTAKVNAASQPK" mobile_element complement(1321872..1322269) /note="source:scaffold_10_CACTA_0140 713 1089" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1322537..1322609) /note="source:scaffold_10_CACTA_0140 634 706" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1322593..1322633) /note="source:scaffold_6_CACTA_0699 1587 1627" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1322638..1322779) /note="source:scaffold_6_CACTA_0699 12796 12933" /mobile_element_type="transposon:TIR/CACTA" gene complement(1327976..1329994) /locus_tag="TCM_027086" /note="dbxref CacaoGD:Thecc1EG027086" mRNA complement(join(1327976..1328806,1328899..1329994)) /locus_tag="TCM_027086" /product="Patatin-like protein 6, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s14940.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043130t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s14940.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc745t1" CDS complement(join(1328453..1328806,1328899..1329825)) /locus_tag="TCM_027086" /note="paralog of Thecc1EG043130t1" /codon_start=1 /product="Patatin-like protein 6, putative" /protein_id="EOY25702.1" /db_xref="Phytozome:POPTR_0012s14940.1" /db_xref="TAIR:AT3G54950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICP6" /translation="MALLKEVDDSLTNQIFSILENRFLFGYDNVDADEPKPHQSIQLQ EMKSGKQVTGKVRILSIDSGSFSDGILAAQSLVRLENFLRRKSGNPNANVAHYFDVVA GSGAGGVLAALLFTRGKNGSPIFSAHEALDFLVKNRRKLFPTSSQGILGRIFRPSKVE KLLSKTFGELTLKDTLKPVLIPCYDLSTHAPFLFSRADALEVDGYDFKMKDVCFATSA DPTVAGAVEMRSVDQRTKIVAVEGGVAMNNPTAAAMTHVLNNKQEFPFCNSVEDLLVL SLGNGESDFGAGNLTPQRPRSFLRIAGEGTSDMVDQAVSMAFGEYRKSNYVRIQGNGF VPKSSATGEALSSIAKEMLAQRNVESVLFQGKKMSEVTNLERIEMVGGELIKEQERRK TSILPTVVLKQPQASASPRTSSASATTVSTQSSC" gene complement(1336880..1341709) /locus_tag="TCM_027087" /note="dbxref CacaoGD:Thecc1EG027087" mRNA complement(join(1336880..1337394,1337788..1337952, 1338491..1338536,1338684..1338721,1340035..1340171, 1340407..1340469,1341050..1341281,1341378..1341695)) /locus_tag="TCM_027087" /product="WD repeat-containing protein 49 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016136001" /inference="similar to AA sequence:Phytozome:GSVIVT01016136001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b026189t1a2; inference alignment:Newbler:10:TSA:cgbaB_g07697t00001" mRNA complement(join(1336961..1337394,1337788..1337952, 1338491..1338536,1338684..1338721,1340035..1340171, 1340407..1340469,1341050..1341284,1341378..1341695)) /locus_tag="TCM_027087" /product="WD repeat-containing protein 49 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016136001" /inference="similar to AA sequence:Phytozome:GSVIVT01016136001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07697t00001; inference alignment:Newbler:10:TSA:cgbaB_g07697t00001" mRNA complement(join(1337213..1337394,1337788..1337952, 1338491..1338536,1338684..1338721,1340035..1340171, 1340407..1340470,1341378..1341709)) /locus_tag="TCM_027087" /product="WD repeat-containing protein 49 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016136001" /inference="similar to AA sequence:Phytozome:GSVIVT01016136001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc195t8_C2; inference alignment:Newbler:10:TSA:cgbaB_g07697t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc198t9_C2" CDS complement(join(1337219..1337394,1337788..1337952, 1338491..1338536,1338684..1338721,1340035..1340171, 1340407..1340470,1341378..1341537)) /locus_tag="TCM_027087" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="WD repeat-containing protein 49 isoform 3" /protein_id="EOY25705.1" /db_xref="Phytozome:GSVIVT01016136001" /db_xref="TAIR:AT1G73090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LF02" /translation="MRAGSYNYTNNYCNYPKTPLPTLATRCCFQSNSQCRIRSPPPAA LRLHRSTFPGKKIGDVPEERRHRLLQSLNPRLISRAWEIAGTRYDDPKLVKKSASNLL SNKDGEIPSEFYNCRTSGGPLPIAWINIFKKTIFCGSNGKTYGRFIGGSIVAQFANRF SPLYFEVTQLKEVMSTEQPCDFAYEFGDGLLDLHECPAGFPRPVKHPYPFSDQVVIYI RHIGPGVLVGQAWQEGKKLDQVPRKLCGEILMVKDYAATIEII" CDS complement(join(1337219..1337394,1337788..1337952, 1338491..1338536,1338684..1338721,1340035..1340171, 1340407..1340469,1341050..1341281,1341378..1341537)) /locus_tag="TCM_027087" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="WD repeat-containing protein 49 isoform 2" /protein_id="EOY25704.1" /db_xref="Phytozome:GSVIVT01016136001" /db_xref="TAIR:AT1G73090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LF02" /translation="MRAGSYNYTNNYCNYPKTPLPTLATRCCFQSNSQCRIRSPPPAA LRLHRSTFPGARVSSTNCGCCEIRAVYGGERPQGSGTASAWDEKPFEVLPNGEKAYLD EMDIITFLHPPKDLIPLDPTSYNAAAYLWKKIGDVPEERRHRLLQSLNPRLISRAWEI AGTRYDDPKLVKKSASNLLSNKDGEIPSEFYNCRTSGGPLPIAWINIFKKTIFCGSNG KTYGRFIGGSIVAQFANRFSPLYFEVTQLKEVMSTEQPCDFAYEFGDGLLDLHECPAG FPRPVKHPYPFSDQVVIYIRHIGPGVLVGQAWQEGKKLDQVPRKLCGEILMVKDYAAT IEII" CDS complement(join(1337219..1337394,1337788..1337952, 1338491..1338536,1338684..1338721,1340035..1340171, 1340407..1340469,1341050..1341284,1341378..1341537)) /locus_tag="TCM_027087" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="WD repeat-containing protein 49 isoform 1" /protein_id="EOY25703.1" /db_xref="Phytozome:GSVIVT01016136001" /db_xref="TAIR:AT1G73090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LF02" /translation="MRAGSYNYTNNYCNYPKTPLPTLATRCCFQSNSQCRIRSPPPAA LRLHRSTFPAGARVSSTNCGCCEIRAVYGGERPQGSGTASAWDEKPFEVLPNGEKAYL DEMDIITFLHPPKDLIPLDPTSYNAAAYLWKKIGDVPEERRHRLLQSLNPRLISRAWE IAGTRYDDPKLVKKSASNLLSNKDGEIPSEFYNCRTSGGPLPIAWINIFKKTIFCGSN GKTYGRFIGGSIVAQFANRFSPLYFEVTQLKEVMSTEQPCDFAYEFGDGLLDLHECPA GFPRPVKHPYPFSDQVVIYIRHIGPGVLVGQAWQEGKKLDQVPRKLCGEILMVKDYAA TIEII" gene 1342799..1368360 /locus_tag="TCM_027088" /note="dbxref CacaoGD:Thecc1EG027088" mRNA join(1342799..1343410,1343535..1343632,1345752..1346808, 1347558..1348070,1348851..1349039,1349124..1349260, 1349577..1349773,1349876..1349920) /locus_tag="TCM_027088" /product="Exocyst complex component 84B isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05693" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010071t1" /inference="similar to AA sequence:ricco:30158.m000500" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc480t11" mRNA join(1343150..1343410,1343535..1343632,1345752..1346808, 1347558..1348070,1368173..1368360) /locus_tag="TCM_027088" /product="Exocyst complex component 84B isoform 2" /inference="alignment:exonerate-protein:2:frave:gene05693" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010071t1" /inference="similar to AA sequence:ricco:30158.m000500" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc480t9; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc480t11; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc428t21_C1" CDS join(1343258..1343410,1343535..1343632,1345752..1346808, 1347558..1348070,1368173..1368340) /locus_tag="TCM_027088" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30158.m000500; paralog of Thecc1EG010071t1" /codon_start=1 /product="Exocyst complex component 84B isoform 2" /protein_id="EOY25707.1" /db_xref="TAIR:AT5G49830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SY82" /translation="MATAKTGRSTRATAGAAKENGTKIEEGLNVFKSDKFDADGYVQS KCSLNDKEIRQLCSYLLDLKRASAEEMRKSVYANYSAFIRTSKEISDLEGELSSIRNL LSTQATLIHGLAEGVHIDSLSPKASEGPTANGLLDIEDSEPSDLEKWSAEFPDLLDVL LAEKRVDEALAALDEGERAVAEAKETKSLSSLALTSLETTIIERKQKLADQLAEAACQ PSTRGAELRASILALKKLGDGPRAHTLLLNAHFQRYQYNMLSLRPSSTSYGGAYTAAL SQLVFSAIAQAASDSLAIFGKEPAYTSELVMWATKQTEAFAHLVKRHALASSAAAGGL RAAAECVQIALGHCSLLEARGLALCPVLLKLFRPSVEQALDANLKRIEESTAALAAAD DWVLTYPLGGTRQSGWPSSASVGNTTAFQHKLTSSAHRFNSMVQEFFEDVGPLLSMQL GGQTLEGLFQVFNSYVNMLIKALPGSMDEDANFEGTGNKIVRMAETEAQQIALLANAS LLADELLPRAAMKLSPNQASYKDDHRRRTSDRQNRHPEQREWKRRLMSSFERLKNTFC QQHALDLIFTEEGDSHLTAEMYINMYGTADEVEWFPSLIFQELFAKLNRMASLAADMF VGRERFATLLLMRLTETFIIWLQKIKAFGMILRMDRGL" CDS join(1343258..1343410,1343535..1343632,1345752..1346808, 1347558..1348070,1348851..1349039,1349124..1349260, 1349577..1349730) /locus_tag="TCM_027088" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30158.m000500; paralog of Thecc1EG010071t1" /codon_start=1 /product="Exocyst complex component 84B isoform 1" /protein_id="EOY25706.1" /db_xref="TAIR:AT5G49830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SY82" /translation="MATAKTGRSTRATAGAAKENGTKIEEGLNVFKSDKFDADGYVQS KCSLNDKEIRQLCSYLLDLKRASAEEMRKSVYANYSAFIRTSKEISDLEGELSSIRNL LSTQATLIHGLAEGVHIDSLSPKASEGPTANGLLDIEDSEPSDLEKWSAEFPDLLDVL LAEKRVDEALAALDEGERAVAEAKETKSLSSLALTSLETTIIERKQKLADQLAEAACQ PSTRGAELRASILALKKLGDGPRAHTLLLNAHFQRYQYNMLSLRPSSTSYGGAYTAAL SQLVFSAIAQAASDSLAIFGKEPAYTSELVMWATKQTEAFAHLVKRHALASSAAAGGL RAAAECVQIALGHCSLLEARGLALCPVLLKLFRPSVEQALDANLKRIEESTAALAAAD DWVLTYPLGGTRQSGWPSSASVGNTTAFQHKLTSSAHRFNSMVQEFFEDVGPLLSMQL GGQTLEGLFQVFNSYVNMLIKALPGSMDEDANFEGTGNKIVRMAETEAQQIALLANAS LLADELLPRAAMKLSPNQASYKDDHRRRTSDRQNRHPEQREWKRRLMSSFERLKNTFC QQHALDLIFTEEGDSHLTAEMYINMYGTADEVEWFPSLIFQELFAKLNRMASLAADMF VGRERFATSLLMRLTETVIIWLSEDQSFWDDIEDGPRPLGPLGLQQFYLDIKFVICFA SQGRYLSRNLHRVVNEIIAKAMAAFSATGMDPYSVLPDDDWFNDICQDAIERLSGKPK ADRDLNSPTASVSAQSMSSVRSHGSS" gene complement(1347557..1375616) /locus_tag="TCM_027094" /note="dbxref CacaoGD:Thecc1EG027094" mRNA complement(join(1347557..1348071,1348852..1348945, 1368268..1368911,1368999..1372159)) /locus_tag="TCM_027094" /product="Leucine-rich repeat receptor protein kinase PEPR1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s00970.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s00970.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.19 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc686t12; alternateUTRof:Thecc1EG027094t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g477t6" mRNA complement(join(1347557..1348067,1348849..1348945, 1368268..1368911,1368999..1372154)) /locus_tag="TCM_027094" /product="Leucine-rich repeat receptor protein kinase PEPR1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s00970.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s00970.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.19 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc428t22; alternateUTRof:Thecc1EG027094t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g477t6" gene 1349971..1356233 /locus_tag="TCM_027089" /note="dbxref CacaoGD:Thecc1EG027089" mRNA join(1349971..1349983,1354208..1354674,1355119..1356233) /locus_tag="TCM_027089" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042514t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc796t1" mobile_element 1351759..1351971 /note="source:INTACT554_F250_scaffold_7-int 1873 2088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1352103..1352437) /note="source:INTACT59_F126_scaffold_9-int 14811 14976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1352961..1353063) /note="source:INTACT59_F126_scaffold_9-int 14304 14406" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(1354262..1354674,1355119..1355590) /locus_tag="TCM_027089" /note="paralog of Thecc1EG042514t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25711.1" /translation="MFPSCMFLVSVFVALMNLKFLPMDIPPPFETHSVIMAMFVITIL VYAANFRNSFFHEVISKYISVVSASLGPTLLAFVLFPGYLGRLILLLWAIYFVKLTYD VCRKRHSISSVPNFLNQLLGPGGPSNEENIPCFTSSNSATASNHKHAILSFLIAALLA LLPLKFHPMNTSAAVFDTHRAILSKFLITTLVYAVVLAIEINLGTNNSPYHLIVSKIS LLLGSLGAACLLLILVRGLGYVTLLIWALFLVKLIYEACQSLHQLYRAISFASDLFNG LGRSRGGYQNERRIMLPV" mobile_element 1354676..1354808 /note="source:scaffold_7_CACTA_0795 2877 3030" /mobile_element_type="transposon:TIR/CACTA" gene 1356389..1368513 /locus_tag="TCM_027090" /note="dbxref CacaoGD:Thecc1EG027090" mRNA join(1356389..1356678,1356797..1356989,1358898..1359011, 1359142..1359479,1359568..1359651,1361614..1361692, 1361812..1361859,1365083..1365540,1365816..1366072, 1366878..1367390,1368173..1368513) /locus_tag="TCM_027090" /product="F14N23.28, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027088t2" /inference="similar to AA sequence:Phytozome:Glyma07g00570.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01844t00002" mobile_element complement(1357452..1362968) /note="source:INTACT606F_F361_scaffold_4-int 23 5562" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(1357601..1362635) /locus_tag="TCM_027093" /note="dbxref CacaoGD:Thecc1EG027093" mRNA complement(join(1357601..1358408,1358658..1358773, 1358882..1359069,1359176..1359257,1359426..1359629, 1359825..1361131,1361456..1361780,1362212..1362348, 1362578..1362635)) /locus_tag="TCM_027093" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400021300.2" /inference="similar to AA sequence:frave:gene20294" /note="quality class is medium-expresste, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" CDS complement(join(1357840..1358408,1358658..1358773, 1358882..1359069,1359176..1359257,1359426..1359629, 1359825..1361131,1361456..1361780,1362212..1362348, 1362578..1362634)) /locus_tag="TCM_027093" /note="dbxref frave:gene20294; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25713.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B6Z3" /translation="MRISHSLIILRRSLIFSDMVSNHGQTQISPTRDPQSPYFIHHTD HPGSVVINPKLTTSNYVTWSRFLNGLNKSFSVVRSQKILMDPIPTLDKVYNLVLREDA QRSMLFRTQPTLETAAMYTAAEGKNKVKKYIVCNHCGKKGHVKEKCYRLIGFSEDFKF TKGKNNVRKGKAAIMDSGASDHIAYSLNKFISARPVTNSFVQLPNNKRAIVTHVGVVK LTSLLTLKNVFCVPSFRFNLVSVGQLTRTKNTSVLFIDKYCVVQDTHSWTVIGVARTF LGLYAMEPKKDEQELSNYSFDKLVKLPFNLSVNACSTGHKAFDLCHFRLGHAPCEKLN IIHQQRANVKCSNQLLCEIRPLAKQRKLPFPVHVKNTKIPFELMHVDIWGPYENPTIS GQRYFLIVVDDHTRFTWIFIMKAKSEVSIIIPSFNAFVQKQFNSAIKSIGTDNAKELG LLYFFENTGIVHQLSCVEAHQQNGIVERKHQHILVVARGLLHQSNVPIYFWGDAVLTA VHIINRLPSKVLHNKTPYELLHHKLPSYDHLRVFGCLCFMFTLTQNRKKLDKRATKCI FLGYPNNMKGYKVYDLSANNVLKSRNVIFHEQTFPFRIKQHDHLPIADSTNQPEPATN ENTSVPARKSTTIRHAPKYLEAYYTELPPATNHVTSYPIAKFLSPQKLSPPHKWVYKV KLKANGEVERFKARLVAEGYNQLDINNAFLNGDLEEVYMDLPEGYSVKGEYTANSRLV CKLHKSLYGLKQAARQWNAKFSAAILNTSVQESNKVKDFLNSLFKLKDLGTIKYFLGL EVAKSPEEHLVATHRVLKFLKASPKQGILMKSKSALKISGYADSHWEGFPDTRRSVTG FCIFIGDSLVRWKSKKQSVVARSSAKAEYRPMASTCCVMIWIKSLLEDFGIKQDEAMD LYSDSQSAIHISKNPVFHERTKHIEIDCHFIREKVLTGLIKPKHISTNIQIADILTKA LQPNQFYKLLSKMNVHDDHRSS" CDS join(1359621..1359651,1361614..1361692,1361812..1361859, 1365083..1365540,1365816..1366072,1366878..1367390, 1368173..1368340) /locus_tag="TCM_027090" /note="paralog of Thecc1EG027088t2" /codon_start=1 /product="F14N23.28, putative" /protein_id="EOY25712.1" /db_xref="Phytozome:Glyma07g00570.1" /db_xref="TAIR:AT5G49830.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SY82" /translation="MGRLLEGDESVYIAAVSRVGCVRKSMLLCASSLRTRLILLEAVW IAIFTLTMCTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLSPKASEGPTAN GLLDIEDSESSDLEKWSAEFPDLLDVLLAKKRVDEALAALDEGERAVAEAKETNSLSS LALISLETAIIERNQKLADQLAEAACQPSTRGAELHASILALKKLAAAGGLRAAAECV QIALGHCSLLEAHGLALCPVLLKLFRPSVEQALDANLKRIEESTAVLAAADDWVLTYP QVVLVNLAGPLVHPLEFFEDVGPLLSMQLGGQTLEGLFQVFYSYVNMLIKALPGSMAE DANFEGTGNKIVQMAETEAQQIALLANASLLAEELLPRAAMKLSPNQASYKDDHCRRT SDRQNRHPEQREWKRRFVSSVERLKNTFCQQHALDLIFTEEVDSHLTAEMYINMYGTA DEVEWFPSLIFQELFAKLNRMASLAADMFVGRERFATLLLMRLTETFIIWLQKIKAFG MILRMDRGL" mRNA complement(join(1368422..1368911,1368999..1372460, 1374762..1375327,1375459..1375616)) /locus_tag="TCM_027094" /product="Leucine-rich repeat receptor protein kinase PEPR1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s00970.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s00970.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g477t6" CDS complement(join(1368565..1368911,1368999..1371984)) /locus_tag="TCM_027094" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Leucine-rich repeat receptor protein kinase PEPR1, putative isoform 1" /protein_id="EOY25708.1" /db_xref="Phytozome:POPTR_0008s00970.1" /db_xref="TAIR:AT1G73080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSL9" /translation="MISNKFLLLLLLCCCFSIQNSCTVFGLNSDGETLLSLLSHWSSV PSSITSTWNASHPNPCKWVGIACDNSNHVLTLNLTGFAISGQLGPQIAGLSRLSTLDL SSNNFSGAIPSGLANCTSLIHLDLSANGFTGSIPDSFNYLQKLSFLNLYSNSLGGAIP ESLFQLTCLESVYLNDNNLSGFIPMNVGNLSKVVVLYLFNNRLSGPIPESLGNCTKLQ ELYLGGNQLVGVLPHSLNNLQNLIYLDVSLNKLQGVIPLGSSNCKNLSILDLSFNSFS GGLPPRLANCSSLIELVAVHSNLTGVIPSSLGLLDQLVKLDLSENRLSGKIPPELGKC KSLQRLLLYDNQLEGEIPNELGMLSELHDLELFINHLTGEIPISIWRIPSLEYLLVYS NNLTGELPSMITELKLLKNISLYDNQFFGVIPQNLGINASLQRLDFTKNKFTGAIPPN LCSRKKLRVLDLGQNQLHGSVTADIGGCKTLWRLILKQNNLTGVLPVFAENPNLAHMD ISENKITGAVPSSLGNCRNLTSINLSMNQLTGLIPSELGNLADLRTLYISHNLLEGSL PSQLSNCSKLETFDVSFNSLNGSVPHAFTSWKHLTTLLLSENHFTGGIPSFLSEFEML SELQLGGNPFGGKIPSSIGAMKNLIYALNLSGNGLTGEIPSELGNLFKLVSLDISHNN LTGTLTVLDGMDSLVDVNISYNHFTGPIPGTLMTFVNSSPSSFVGDPGLCINCQPSGA SGSRTCPGNNYLNPCNNRMRSQKGLSKVEVAMIALGSSLVVVALLLVVLMFVFFRKRK QELGAHAEEGPSALLNKVMEATENLNDRYMIGRGAHGVVFRASLSPGNDFAVKRIMLT KHKRGSLSMAREIQTIGKVKHRNLVRLEDFWLRKDYGLILYRYLPNGSLHDVLHAINP ARILDWSVRYRIAVGTAHGLEYLHYDCDPAIVHRDIKPENILLDSDMEPHISDFGIAK LLDQSAASEPSTSLVGTIGYIAPENAFTTTRSKESDVYSYGVVLLELITRKRALDPAF KGETDIVGWVRSVWSHTEDINRIADSGLMDEFTESEIRYQVIDVLLVALRCTEKEPSK RPTMRGVVTQLLNSNITERSKH" CDS complement(join(1368565..1368911,1368999..1371984)) /locus_tag="TCM_027094" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Leucine-rich repeat receptor protein kinase PEPR1, putative isoform 1" /protein_id="EOY25709.1" /db_xref="Phytozome:POPTR_0008s00970.1" /db_xref="TAIR:AT1G73080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSL9" /translation="MISNKFLLLLLLCCCFSIQNSCTVFGLNSDGETLLSLLSHWSSV PSSITSTWNASHPNPCKWVGIACDNSNHVLTLNLTGFAISGQLGPQIAGLSRLSTLDL SSNNFSGAIPSGLANCTSLIHLDLSANGFTGSIPDSFNYLQKLSFLNLYSNSLGGAIP ESLFQLTCLESVYLNDNNLSGFIPMNVGNLSKVVVLYLFNNRLSGPIPESLGNCTKLQ ELYLGGNQLVGVLPHSLNNLQNLIYLDVSLNKLQGVIPLGSSNCKNLSILDLSFNSFS GGLPPRLANCSSLIELVAVHSNLTGVIPSSLGLLDQLVKLDLSENRLSGKIPPELGKC KSLQRLLLYDNQLEGEIPNELGMLSELHDLELFINHLTGEIPISIWRIPSLEYLLVYS NNLTGELPSMITELKLLKNISLYDNQFFGVIPQNLGINASLQRLDFTKNKFTGAIPPN LCSRKKLRVLDLGQNQLHGSVTADIGGCKTLWRLILKQNNLTGVLPVFAENPNLAHMD ISENKITGAVPSSLGNCRNLTSINLSMNQLTGLIPSELGNLADLRTLYISHNLLEGSL PSQLSNCSKLETFDVSFNSLNGSVPHAFTSWKHLTTLLLSENHFTGGIPSFLSEFEML SELQLGGNPFGGKIPSSIGAMKNLIYALNLSGNGLTGEIPSELGNLFKLVSLDISHNN LTGTLTVLDGMDSLVDVNISYNHFTGPIPGTLMTFVNSSPSSFVGDPGLCINCQPSGA SGSRTCPGNNYLNPCNNRMRSQKGLSKVEVAMIALGSSLVVVALLLVVLMFVFFRKRK QELGAHAEEGPSALLNKVMEATENLNDRYMIGRGAHGVVFRASLSPGNDFAVKRIMLT KHKRGSLSMAREIQTIGKVKHRNLVRLEDFWLRKDYGLILYRYLPNGSLHDVLHAINP ARILDWSVRYRIAVGTAHGLEYLHYDCDPAIVHRDIKPENILLDSDMEPHISDFGIAK LLDQSAASEPSTSLVGTIGYIAPENAFTTTRSKESDVYSYGVVLLELITRKRALDPAF KGETDIVGWVRSVWSHTEDINRIADSGLMDEFTESEIRYQVIDVLLVALRCTEKEPSK RPTMRGVVTQLLNSNITERSKH" CDS complement(join(1368565..1368911,1368999..1371984)) /locus_tag="TCM_027094" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Leucine-rich repeat receptor protein kinase PEPR1, putative isoform 1" /protein_id="EOY25710.1" /db_xref="Phytozome:POPTR_0008s00970.1" /db_xref="TAIR:AT1G73080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSL9" /translation="MISNKFLLLLLLCCCFSIQNSCTVFGLNSDGETLLSLLSHWSSV PSSITSTWNASHPNPCKWVGIACDNSNHVLTLNLTGFAISGQLGPQIAGLSRLSTLDL SSNNFSGAIPSGLANCTSLIHLDLSANGFTGSIPDSFNYLQKLSFLNLYSNSLGGAIP ESLFQLTCLESVYLNDNNLSGFIPMNVGNLSKVVVLYLFNNRLSGPIPESLGNCTKLQ ELYLGGNQLVGVLPHSLNNLQNLIYLDVSLNKLQGVIPLGSSNCKNLSILDLSFNSFS GGLPPRLANCSSLIELVAVHSNLTGVIPSSLGLLDQLVKLDLSENRLSGKIPPELGKC KSLQRLLLYDNQLEGEIPNELGMLSELHDLELFINHLTGEIPISIWRIPSLEYLLVYS NNLTGELPSMITELKLLKNISLYDNQFFGVIPQNLGINASLQRLDFTKNKFTGAIPPN LCSRKKLRVLDLGQNQLHGSVTADIGGCKTLWRLILKQNNLTGVLPVFAENPNLAHMD ISENKITGAVPSSLGNCRNLTSINLSMNQLTGLIPSELGNLADLRTLYISHNLLEGSL PSQLSNCSKLETFDVSFNSLNGSVPHAFTSWKHLTTLLLSENHFTGGIPSFLSEFEML SELQLGGNPFGGKIPSSIGAMKNLIYALNLSGNGLTGEIPSELGNLFKLVSLDISHNN LTGTLTVLDGMDSLVDVNISYNHFTGPIPGTLMTFVNSSPSSFVGDPGLCINCQPSGA SGSRTCPGNNYLNPCNNRMRSQKGLSKVEVAMIALGSSLVVVALLLVVLMFVFFRKRK QELGAHAEEGPSALLNKVMEATENLNDRYMIGRGAHGVVFRASLSPGNDFAVKRIMLT KHKRGSLSMAREIQTIGKVKHRNLVRLEDFWLRKDYGLILYRYLPNGSLHDVLHAINP ARILDWSVRYRIAVGTAHGLEYLHYDCDPAIVHRDIKPENILLDSDMEPHISDFGIAK LLDQSAASEPSTSLVGTIGYIAPENAFTTTRSKESDVYSYGVVLLELITRKRALDPAF KGETDIVGWVRSVWSHTEDINRIADSGLMDEFTESEIRYQVIDVLLVALRCTEKEPSK RPTMRGVVTQLLNSNITERSKH" mobile_element 1373336..1373454 /note="source:scaffold_1_CACTA_0016 1414 1537" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1374348..1374690) /note="source:scaffold_9_CACTA_0932 3233 3584" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1374528..1374824 /note="source:CACAO_Helitron_E81_scaffold_3 1252 1544" /mobile_element_type="transposon:Helitron" gene complement(1375839..1382392) /locus_tag="TCM_027095" /note="dbxref CacaoGD:Thecc1EG027095" mRNA complement(join(1375839..1376631,1377639..1377721, 1377825..1377894,1377992..1378083,1379624..1379738, 1379859..1379988,1381170..1381245,1381341..1381520, 1382075..1382392)) /locus_tag="TCM_027095" /product="RNA-binding family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016123001" /inference="similar to AA sequence:ricco:30158.m000503" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15473t3" CDS complement(join(1376535..1376631,1377639..1377721, 1377825..1377894,1377992..1378083,1379624..1379738, 1379859..1379988,1381170..1381245,1381341..1381520, 1382075..1382218)) /locus_tag="TCM_027095" /note="dbxref ricco:30158.m000503" /codon_start=1 /product="RNA-binding family protein" /protein_id="EOY25714.1" /db_xref="TAIR:AT3G21215.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HK68" /translation="MAGAGIHPYHQQWPPAPAPPPPPAAAAAAPPPPPSVHHPPPPAS SHDEVRTIFITGLPEDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSSAQLAVA AKDSLQDMLFDAESKSVLHIEMAKKNLFVKRGIVADSNAYDQSKRLRTGGDYSHSAYT APSPFHPPPAPVWGPQGYMAPTPPPYDPYGGYPVPPVPMPTPAPVPAPSSYVPVQNTK DNPPCNTLFIGNLGENINEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATN VHHNLQGAVIPSSGSVGMRIQYSKNPFGKRKDSGHPIASPGANGAPPSMTYQ" mobile_element complement(1382677..1382816) /note="source:scaffold_9_CACTA_0942 5229 5370" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1382776..1382869 /note="source:CACAO_Mariner_E220_scaffold_9 14738 14831" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(1384071..1384240) /note="source:scaffold_1_CACTA_0008 14054 14203" /mobile_element_type="transposon:TIR/CACTA" gene 1385074..1387558 /locus_tag="TCM_027096" /note="dbxref CacaoGD:Thecc1EG027096" mRNA join(1385074..1385254,1385364..1385390,1385513..1385575, 1386881..1386959,1387062..1387108,1387260..1387558) /locus_tag="TCM_027096" /product="Small nuclear ribonucleoprotein family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s18800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038810t1" /inference="similar to AA sequence:Phytozome:Glyma13g01320.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1428t1" CDS join(1385213..1385254,1385364..1385390,1385513..1385575, 1386881..1386959,1387062..1387108,1387260..1387346) /locus_tag="TCM_027096" /note="paralog of Thecc1EG038810t1" /codon_start=1 /product="Small nuclear ribonucleoprotein family protein" /protein_id="EOY25715.1" /db_xref="Phytozome:Glyma13g01320.1" /db_xref="TAIR:AT4G30330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9VLV5" /translation="MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII GFDEYMNLVLDDAEEVNIKKKSRKSLGRILLKGDNITLMMNAGKVRNKFEATVQFGSF CSYYHNEYAALL" mobile_element complement(1385421..1385468) /note="source:CACAO_M_E58230_F143_scaffold_9 1689 1736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1386478..1386557) /note="source:CACAO_M_S_E16386_F9_scaffold_2 2049 2143" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1387979..1392338) /locus_tag="TCM_027097" /note="dbxref CacaoGD:Thecc1EG027097" mRNA complement(join(1387979..1389303,1389398..1389508, 1389768..1390144,1391372..1392338)) /locus_tag="TCM_027097" /product="D-3-phosphoglycerate dehydrogenase" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400016146" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007131t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01000.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g380t2" mobile_element 1388068..1388161 /note="source:scaffold_10_CACTA_0127 10153 10244" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(1388536..1389303,1389398..1389508, 1389768..1390144,1391372..1392062)) /locus_tag="TCM_027097" /note="paralog of Thecc1EG007131t1" /codon_start=1 /product="D-3-phosphoglycerate dehydrogenase" /protein_id="EOY25716.1" /db_xref="Phytozome:POPTR_0008s01000.1" /db_xref="TAIR:AT1G17745.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04130" /translation="MFSNAMASSIFNPCSIITASQAQPTSSSSRPSQLLSFLHSTNPA GPVVDLKLSAASSSWGCQDDSKQSLSRCLAANITSSALKTAESSRETSSLLSAEGVSS SGTRPTILVSEKLGEAGLQLLRSFGDVDCSYDLSPEQLCEKISSCDALIVRSGTKVTR QVLEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTVAAAEHGIALIAAMA RNVAQADASMKAGKWQRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMHVIAHDP YAPADRARAIGVDLVSFDQAISTADFISLHMPLTSTTSKIFNDDTFGKMKKGVRIVNV ARGGVIDEEALVRALDSGKVAQAALDVFTEEPPAKDSKLVQHENVVVTPHLGASTKEA QEGVAIEIAEAVVGALKGELSATAVNAPMVPQEVMTELAPYVVLAEKLGRLAVQLVAG GRGIKSVKVVYQSARDPDDLDTRLLRAMITKGIIEPISSSFINLVNADFTAKEKGLRI SEERVVVDASPEFPVHSIQVLISNVDSKFASAVSENGEISIEGRVKYGVPHLTRVGSF EVDVSLEGNLILCRQIDQPGMIGQVGNILGQGNINVSFMSVGRTVRRNKAIMAIGVDE EPDKEALRKIGTVPAIEEFVFLKL" gene complement(1394956..1400033) /locus_tag="TCM_027098" /note="dbxref CacaoGD:Thecc1EG027098" mRNA complement(join(1394956..1395309,1395507..1395613, 1396304..1396972,1398115..1399639,1399817..1400033)) /locus_tag="TCM_027098" /product="Glucose-methanol-choline oxidoreductase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016166t4" /inference="similar to AA sequence:frave:gene05701" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1385t1" CDS complement(join(1396651..1396972,1398115..1399639, 1399817..1399910)) /locus_tag="TCM_027098" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene05701; paralog of Thecc1EG016166t4" /codon_start=1 /product="Glucose-methanol-choline oxidoreductase family protein isoform 1" /protein_id="EOY25717.1" /db_xref="TAIR:AT1G73050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PFE0" /translation="MGRFFVFFLECVAFLLLLYPVFSLARPHPQRDPVYLNFVLNATD LPSEDYYDYIIVGGGTAGCPLAATLSQSYRVLVLERGGVPYGNQQLMTQEGFLTTLTQ VDTYDSPAQAFTSEDGVPNARGRILGGSSAINAGFYSRADQEFYKHSGVNWDLSLVNQ SYQWVERRVVFRPELKNWQSAVRDGLIEAGVDPYNGFSLDHLVGTKIGGSTFDSSGKR HSAADLLNYARPGSIKVAIYASVERVLLASLSSSNAIARQRQSAIGVVFRDQMGRYHH AMVKEQGEVLLCAGALGSPQLLLLSGIGPRSYLSSWGIPVAYHHPYVGQFLYDNPRNG ISIVPPVPLEHSLIQVVGITEAGAYVEAASNVIPFTSPARSVFIRTPSSPLFLTVATI MEKIVGPLSSGSLRLASTDVRLNPIVRFNYFTNPIDVERCVNGTRRIGDLLRSRSMDY FKFREWFGTRNFRFVGPELPVDQLNNEQMADFCRRTVSTIWHYHGGCVVGKVVDNNYH VIGIDALRVVDGSTFSVSPGTNPQATLMMLGSDEQPLSKPAMVEYIEADLDFKIAKEQ KLSSQPSSSRQPVTRPEPTSFVYVARPQSKFNPETHAKPQVQGDHYQRIAKRLKQLKR SKKKALQAQKPSAEGCRVLLSL" mRNA complement(join(1397766..1398021,1398115..1399639, 1399817..1400019)) /locus_tag="TCM_027098" /product="Glucose-methanol-choline (GMC) oxidoreductase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s01010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016166t4" /inference="similar to AA sequence:frave:gene05701" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1385t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1385t1" CDS complement(join(1397976..1398021,1398115..1399639, 1399817..1399910)) /locus_tag="TCM_027098" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene05701; paralog of Thecc1EG016166t4" /codon_start=1 /product="Glucose-methanol-choline (GMC) oxidoreductase family protein isoform 2" /protein_id="EOY25718.1" /db_xref="TAIR:AT1G73050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PFE0" /translation="MGRFFVFFLECVAFLLLLYPVFSLARPHPQRDPVYLNFVLNATD LPSEDYYDYIIVGGGTAGCPLAATLSQSYRVLVLERGGVPYGNQQLMTQEGFLTTLTQ VDTYDSPAQAFTSEDGVPNARGRILGGSSAINAGFYSRADQEFYKHSGVNWDLSLVNQ SYQWVERRVVFRPELKNWQSAVRDGLIEAGVDPYNGFSLDHLVGTKIGGSTFDSSGKR HSAADLLNYARPGSIKVAIYASVERVLLASLSSSNAIARQRQSAIGVVFRDQMGRYHH AMVKEQGEVLLCAGALGSPQLLLLSGIGPRSYLSSWGIPVAYHHPYVGQFLYDNPRNG ISIVPPVPLEHSLIQVVGITEAGAYVEAASNVIPFTSPARSVFIRTPSSPLFLTVATI MEKIVGPLSSGSLRLASTDVRLNPIVRFNYFTNPIDVERCVNGTRRIGDLLRSRSMDY FKFREWFGTRNFRFVGPELPVDQLNNEQMADFCRRTVSTIWHYHGGCVVGKVVDNNYH VIGIDALRVVDGSTFSVSPGTNPQATLMMLGRYLGLKIIKERTRLK" mobile_element complement(1401119..1401192) /note="source:scaffold_4_CACTA_0511 14342 14415" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1402378..1403093) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17254 17965" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1403154..1403214 /note="source:scaffold_9_CACTA_0942 4902 4961" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1403206..1403723 /note="source:scaffold_8_CACTA_0858 14201 14733" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1403717..1404030 /note="source:scaffold_9_CACTA_0946 17816 17999" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1404360..1404483) /note="source:scaffold_4_CACTA_0506 3423 3561" /mobile_element_type="transposon:TIR/CACTA" gene 1404828..1427944 /locus_tag="TCM_027100" /note="dbxref CacaoGD:Thecc1EG027100" mRNA join(1404828..1405203,1405326..1405431,1405547..1405670, 1409245..1409324,1409413..1409590,1409678..1409742, 1410521..1410603,1410698..1410783,1410936..1411049, 1411642..1411761,1412171..1412273,1412532..1412668, 1413003..1413068,1413164..1413281,1413394..1413434, 1414400..1414471,1414554..1414661,1414747..1414852, 1416608..1416720,1416838..1416925,1417121..1417221, 1417392..1417499,1417598..1417703,1417797..1417876, 1418225..1418371,1418506..1418581,1418701..1418825, 1418914..1419024,1419104..1419253,1419353..1419427, 1419559..1419640,1419741..1419856,1419934..1420035, 1420156..1420230,1420324..1420419,1420508..1420609, 1420722..1420823,1421401..1421583,1421659..1421770, 1421958..1422034,1422101..1422180,1422892..1422954, 1423079..1423205,1423988..1424110,1424263..1424340, 1424584..1424742,1424828..1424986,1425716..1425813, 1425945..1426101,1426197..1426310,1426445..1426540, 1426622..1426693,1426772..1427057,1427148..1427944) /locus_tag="TCM_027100" /product="ARM repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g35140.1" /inference="similar to AA sequence:ricco:28293.m000037" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc485t8" CDS join(1405041..1405203,1405326..1405431,1405547..1405670, 1409245..1409324,1409413..1409590,1409678..1409742, 1410521..1410603,1410698..1410783,1410936..1411049, 1411642..1411761,1412171..1412273,1412532..1412668, 1413003..1413068,1413164..1413281,1413394..1413434, 1414400..1414471,1414554..1414661,1414747..1414852, 1416608..1416720,1416838..1416925,1417121..1417221, 1417392..1417499,1417598..1417703,1417797..1417876, 1418225..1418371,1418506..1418581,1418701..1418825, 1418914..1419024,1419104..1419253,1419353..1419427, 1419559..1419640,1419741..1419856,1419934..1420035, 1420156..1420230,1420324..1420419,1420508..1420609, 1420722..1420823,1421401..1421583,1421659..1421770, 1421958..1422034,1422101..1422180,1422892..1422954, 1423079..1423205,1423988..1424110,1424263..1424340, 1424584..1424742,1424828..1424986,1425716..1425813, 1425945..1426101,1426197..1426310,1426445..1426540, 1426622..1426693,1426772..1427057,1427148..1427416) /locus_tag="TCM_027100" /note="dbxref ricco:28293.m000037" /codon_start=1 /product="ARM repeat superfamily protein" /protein_id="EOY25719.1" /db_xref="TAIR:AT2G35630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94FN2" /translation="MSSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLASLCDSIT DPKDSRLREIAPFFRKTVADSNAPVQEKALDALIAFLKAADADAGRYAKEVCDAIVAK CLTGRPKTVEKAQAAFMLWVELEAVDVFLDSMEKAIKNKVAKAVVPAIDVMFQALSEF GAKVVPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMK KELEAELVNVTGTAKPSRKIRSEQDREPEHEAVSEAAGPGPVEESADNTPQEIDEYEL VDPVDILTPLEKSGFWDGVKATKWSERKEAVAELTKLASTKKIAPGDFTEVCRTLKKL VTDVNIAVAVEAIQAVGNLARGLRTHFAGSSRFLLTVLLEKLKEKKPALTESLTQTLQ AMHKAGCLNLADIVEDVKTATKNKVPLVRSLTLNWVTFCIETSNKAVILKVHKDYVSI CMECLNDGTPDVRDAAFSALAAVAKSVGMRPLERSLEKLDDVRKKKLSEMIAGSGAAV SANTSSAAVQNSGGGVSSTEVSEGSFVRRSAASMLSGKRPVPVAPANKKGASVKSGNN KKVEGAGRPETAKLTEAPEDIEPAEMSLEEIESRLGSLIQADTVSQLKSAVWKERLEA ISLLKQQVEGIQDLDKSVEILIRLLCAVPGWNEKNVQVQQQVIEIVTYLASTASKLPK KCVVLCLLGISERVADIKTRAHAMKCLTTFSESVGPGFVFERLYKIMKEHKNPKVLSE GLLWMVSAVDDFGVSHLKLKDLIDLCKDTGLQSSAAATRNATIKVLGALHKFVGPDIK GFLTDVKPALLSALDAEYEKNPFEGTSAIPKKTVKALESTSLSVGGLDGLPREDISGK ITPTLLKSLESPDWKVRLESIEAVNKILEEANKRIQPTGTGELFGALRGRLYDSNKNL VMATLTTIGGVASALGPAVEKASKGILSDILKCLGDNKKHMRESTLSTLDAWNAAVHF DKMVPYITSALIDTKLGAEGRKDLFDWSSRQLSGLSEFSDGVHLLKSAATAMMDKSSD VRKAAEGCIGEILRVSGQEIIEKNLKDIQGPALALILERIKPYGSFQESLESSKGVST GLASKTNAKVVKSTSNGVTKHGNRAVTSRAIPTKALRPETMLSVQDIAVQSQALLNVK DSNKEERERMVVRRFKFEEPRIEQIQDLENDMMKYFREDLHRRLLSTDFKKQVDGLEM LQKALPSIGKEIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFESLKGEAYALTE SEAAIFLPCLIEKVGHNIEKVREKMRELAKQIVQMYSASKSYPYILEGLRSKNNRTRI ECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW RYVGKLTEAQKSMLDDRFKWKVREMEKRREGRPGEARAALRRSVRENAPDVAEQSGEV SQSVSGSIFARKNYGQPDLNMERHLMPRVLGGVTGPTNWNEALDIISFGSPEQSVEGM KVVCHELTQATNDPEGSLMDELEKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLN TLMQTFQNKRLAHAVKESTLDNLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILD NADRTSSFVVLINLLRPLDPSRWPSPASNETFAARNQKFSDLVVKCLIKLTKVLQSTI YDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLS LVPIDMKPQPIILAYIDLNLETLAAARMLTSTSPGQTHWGDSGANNPAPATNSADAQL KQELAAIFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQM EKNAAAGRTPSSLPMSTPPPASLTASSPEFAPLSPVHTNSANDSKSLNTKSDPTNFTL PPSYTEDNRAGNAINTRVLGSENALADQRNERVMSGVTSGTLDAIRERMKSMQLAAAA GNIDYGTRPLMSVNDSLNLGLSTQTRPLDHPAIENPAQGGVLPMDEKALSGLQARMER LKSGALEPL" gene 1428582..1430209 /locus_tag="TCM_027101" /note="dbxref CacaoGD:Thecc1EG027101" mRNA 1428582..1430209 /locus_tag="TCM_027101" /product="Mitogen-activated protein kinase kinase 4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013003t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s01030.5" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15475t1" CDS 1429053..1430144 /locus_tag="TCM_027101" /note="paralog of Thecc1EG013003t1" /codon_start=1 /product="Mitogen-activated protein kinase kinase 4" /protein_id="EOY25720.1" /db_xref="Phytozome:POPTR_0008s01030.5" /db_xref="TAIR:AT1G51660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80397" /translation="MRPINQQPQPPAGGFSSNFSSSSSSSSAHRSRPRRRADLTLPLP QRDPSFAVPLPLPPSNNSATSASNANATAVQQVNFSELDRVNRVGSGTGGTVYKVLHR PSSRAFALKVIYGNHEESVRRQIRREIEILRDVDHPNVVKCHEMYDHNGEIQVLLEFM DGGSLEGTHIPQESNLSDLARQILSGLNYLHRRHIVHRDIKPSNLLINFKKRVKIADF GVSRILDQTMDACNSSVGTIAYMSPERINTDLNHGRYDGYAGDIWSLGVSILEFYLGR FPFAVGRQGDWASLMCAICMSQPPEAPPSASYEFRHFISCCLQRDPARRWTAAQLLQH PFVVRGIPGQNHAAQNLHQLLPPPPPLST" gene complement(1432681..1437382) /locus_tag="TCM_027102" /note="dbxref CacaoGD:Thecc1EG027102" mRNA complement(join(1432681..1433379,1435690..1435862, 1436089..1436282,1436786..1436855,1436960..1437344)) /locus_tag="TCM_027102" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29609.m000605" /inference="similar to AA sequence:ricco:29609.m000605" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15480t1" mRNA complement(join(1432725..1433379,1435690..1435862, 1436089..1436270,1436786..1436855,1436960..1437382)) /locus_tag="TCM_027102" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29609.m000605" /inference="similar to AA sequence:ricco:29609.m000605" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc293t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15480t1" CDS complement(join(1433310..1433379,1435690..1435862, 1436089..1436270,1436786..1436855,1436960..1437169)) /locus_tag="TCM_027102" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29609.m000605" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /protein_id="EOY25722.1" /db_xref="TAIR:AT1G10310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SY73" /translation="MTTASFSGSNGAAKTVLVTGVSKGLGRALALELSKRGHTVIGCS RAQEKLNSLQSELAAPDRHLLLNVDVRSNSSVEELARLVMEKKVVPDIIGTINKNNRI WEVPAEEFDTVIDTNVKGVANVMRHFIPLMIPKRQGIIVNMSSGWGRSGAALVAPYCA SKWAIEGLSKAVAKEMPDGFAVVALSPGVINTEMLQSCFGSSASGYQTPEAWSFKAAT MILNLTAADNGASLTV" CDS complement(join(1433310..1433379,1435690..1435862, 1436089..1436282,1436786..1436855,1436960..1437169)) /locus_tag="TCM_027102" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29609.m000605" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /protein_id="EOY25721.1" /db_xref="TAIR:AT1G10310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SY73" /translation="MTTASFSGSNGAAKTVLVTGVSKGLGRALALELSKRGHTVIGCS RAQEKLNSLQSELAAPDRHLLLNVDVRSNSSVEELARLVMEKKVVPDIIVNNAGTINK NNRIWEVPAEEFDTVIDTNVKGVANVMRHFIPLMIPKRQGIIVNMSSGWGRSGAALVA PYCASKWAIEGLSKAVAKEMPDGFAVVALSPGVINTEMLQSCFGSSASGYQTPEAWSF KAATMILNLTAADNGASLTV" mobile_element 1434671..1434810 /note="source:CACAO_hAT_E3863_scaffold_9 1757 1900" /mobile_element_type="transposon:TIR/hAT" gene complement(1437695..1443849) /locus_tag="TCM_027103" /note="dbxref CacaoGD:Thecc1EG027103" mRNA complement(join(1437695..1437886,1438609..1438676, 1439182..1439221,1440490..1440613,1442162..1442229, 1442352..1442418,1442562..1442631,1442932..1442982, 1443092..1443105,1443215..1443245,1443437..1443849)) /locus_tag="TCM_027103" /product="Elongation factor P (EF-P) family protein" /inference="alignment:exonerate- protein:2:ricco:58870.m000013" /inference="similar to AA sequence:TAIR:AT4G26310.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g394t4" CDS complement(join(1437874..1437886,1438609..1438676, 1439182..1439221,1440490..1440613,1442162..1442229, 1442352..1442418,1442562..1442631,1442932..1442982, 1443092..1443105,1443215..1443245,1443437..1443652)) /locus_tag="TCM_027103" /codon_start=1 /product="Elongation factor P (EF-P) family protein" /protein_id="EOY25723.1" /db_xref="TAIR:AT4G26310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940K8" /translation="MTWHKHKHKHKQCVKMKALEVGKRLSASLSFLLKPNAANPTLAS LCPSSHHSLLSSPWSASQDRGVKVNAIHLRPGNVIEKSGRVYQVVESEHKQRGRGGAM MQLELRDVDNGNKVSLRFGTEEPVERVFVEEKSFSCLYTEKNTAFLIEPETFDQLQVP LDLFGKSAAYLKEEMKVRLQLYDGRPLSASVPKRVTCTIKETQAPMKGITSTPRYKKA LLDNGLTVQVPPYLETGEEIIISTEDDSFLGRANK" mobile_element 1439944..1440048 /note="source:CACAO_Helitron_SS_E51_scaffold_6 906 1031" /mobile_element_type="transposon:Helitron" mobile_element 1443715..1443911 /note="source:scaffold_7_CACTA_0795 2842 3061" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1443959..1444250) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17663 17966" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1444348..1444540) /note="source:scaffold_1_CACTA_0008 1170 1353" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1444412..1444711) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17254 17579" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1444946..1445055) /note="source:scaffold_7_CACTA_0795 2863 2973" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1446504..1446670) /note="source:scaffold_6_CACTA_0705 1713 1865" /mobile_element_type="transposon:TIR/CACTA" gene 1447720..1455277 /locus_tag="TCM_027104" /note="dbxref CacaoGD:Thecc1EG027104" mRNA join(1447720..1448344,1448661..1448792,1448893..1449024, 1449202..1449360,1451978..1452070,1452406..1452522, 1453019..1453093,1453309..1453532,1453775..1455277) /locus_tag="TCM_027104" /product="Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s23740.1" /inference="similar to AA sequence:TAIR:AT1G10320.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b026204t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g495t1" mRNA join(1447839..1448344,1448661..1448792,1448893..1449024, 1449202..1449397,1449782..1449857,1450029..1450077, 1451978..1452070,1452406..1452522,1453019..1453093, 1453309..1453532,1453775..1455277) /locus_tag="TCM_027104" /product="Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s23740.1" /inference="similar to AA sequence:Phytozome:GSVIVT01023150001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g495t1" mRNA join(1447902..1448344,1448661..1448792,1448878..1449024, 1449202..1449360,1451978..1452070,1452406..1452522, 1453019..1453093,1453309..1453532,1453775..1455183) /locus_tag="TCM_027104" /product="Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s23740.1" /inference="alignment:exonerate- protein:2:ricco:29609.m000599" /inference="similar to AA sequence:TAIR:AT1G10320.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g495t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g495t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc233t4" CDS join(1447973..1448344,1448661..1448792,1448878..1449024, 1449202..1449360,1451978..1452070,1452406..1452522, 1453019..1453093,1453309..1453532,1453775..1455023) /locus_tag="TCM_027104" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 2" /protein_id="EOY25725.1" /db_xref="TAIR:AT1G10320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SY74" /translation="MGEAETALKEEEGGGERENHQMEKSRKEKRKQMKKMKRKQVRKE AAEKEREAEEARLNDPEEQMRIQREEEEERKRREIALKEFEERERVWIEAMEMKRKAQ EEEEKEEEEKRKDLKEDANGEQEEMSDDWEYIEGSPQIIWEGNEITVRKKQVRVPKKD ANQKSKEEDFVPQDADRPTSNPLPPQSEAFADYLNASSAQQVLESVAKEVPNFGTEQD KAHCPFHLKTGACRFGQRCSRVHFYPDKSCTLLMRNMYNGPGLAWEQDEGLEYTDEEV ERCYEEFYEDVHTEFLKFGEIVNFKVCKNGAFHLRGNVYVHYKMLESAVLAYHSINGR YFAGKQVKCEFVNLTRWKVAICGEFMKSRLKTCSHGTACNFIHCFRNPGGDYEWADWD KPPPRYWVKKMGALFGYSDEAGFEKQIEQEHSGQSRNRSRVIKSDADRHRSRRSKSRE MNRLIGGADRSPCIEDDVEESSHSQRGKNNDRKQTKGLDGRSYRESKSLKWDQNREKN HDTSSDGGYSDSKRGKKIDRKRAKTLDGRSDRQRSLTWDQNSEEIHDTSSDGGYSDSK RGKKNDRKQAKTLDGRSDRQRGLKWDENSEKIHTTSSDGGYSDSKRGKENDRKQAKVL DGGRSDRQRSLTWDQNSEEIHDTSSYGGYSDSKRGKKNDRKQAKTLDGRSDRQRSLKC DENSEKIHDTSSDGSYSDSKRGKKNDRKRAKTLDGRSGRQRSLKWDENSEQIHYTSSD GGYSHSKRGKKNERKKAKLLDGRSDRHRSLKWDQNRERTLDTSSDEGYSERDIDAARD ADEVTHHCHAKEHSKHQSESLEYLADNRSFKNRDYEDTENSPAQTKKRTRHRSSKGG" CDS join(1447973..1448344,1448661..1448792,1448893..1449024, 1449202..1449360,1451978..1452070,1452406..1452522, 1453019..1453093,1453309..1453532,1453775..1455023) /locus_tag="TCM_027104" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 3" /protein_id="EOY25726.1" /db_xref="TAIR:AT1G10320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SY74" /translation="MGEAETALKEEEGGGERENHQMEKSRKEKRKQMKKMKRKQVRKE AAEKEREAEEARLNDPEEQMRIQREEEEERKRREIALKEFEERERVWIEAMEMKRKAQ EEEEKEEEEKRKDLKEDANGEQEEMSDDWEYIEGSPQIIWEGNEITVRKKQVRVPKKD ANQKSKEEDADRPTSNPLPPQSEAFADYLNASSAQQVLESVAKEVPNFGTEQDKAHCP FHLKTGACRFGQRCSRVHFYPDKSCTLLMRNMYNGPGLAWEQDEGLEYTDEEVERCYE EFYEDVHTEFLKFGEIVNFKVCKNGAFHLRGNVYVHYKMLESAVLAYHSINGRYFAGK QVKCEFVNLTRWKVAICGEFMKSRLKTCSHGTACNFIHCFRNPGGDYEWADWDKPPPR YWVKKMGALFGYSDEAGFEKQIEQEHSGQSRNRSRVIKSDADRHRSRRSKSREMNRLI GGADRSPCIEDDVEESSHSQRGKNNDRKQTKGLDGRSYRESKSLKWDQNREKNHDTSS DGGYSDSKRGKKIDRKRAKTLDGRSDRQRSLTWDQNSEEIHDTSSDGGYSDSKRGKKN DRKQAKTLDGRSDRQRGLKWDENSEKIHTTSSDGGYSDSKRGKENDRKQAKVLDGGRS DRQRSLTWDQNSEEIHDTSSYGGYSDSKRGKKNDRKQAKTLDGRSDRQRSLKCDENSE KIHDTSSDGSYSDSKRGKKNDRKRAKTLDGRSGRQRSLKWDENSEQIHYTSSDGGYSH SKRGKKNERKKAKLLDGRSDRHRSLKWDQNRERTLDTSSDEGYSERDIDAARDADEVT HHCHAKEHSKHQSESLEYLADNRSFKNRDYEDTENSPAQTKKRTRHRSSKGG" CDS join(1449784..1449857,1450029..1450077,1451978..1452070, 1452406..1452522,1453019..1453093,1453309..1453532, 1453775..1455023) /locus_tag="TCM_027104" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1" /protein_id="EOY25724.1" /db_xref="Phytozome:GSVIVT01023150001" /db_xref="TAIR:AT1G10320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SPC8" /translation="MHGVTSVEVLGIGIGWLTLKLLANLPIITPIILDSYCISYQYTD EEVERCYEEFYEDVHTEFLKFGEIVNFKVCKNGAFHLRGNVYVHYKMLESAVLAYHSI NGRYFAGKQVKCEFVNLTRWKVAICGEFMKSRLKTCSHGTACNFIHCFRNPGGDYEWA DWDKPPPRYWVKKMGALFGYSDEAGFEKQIEQEHSGQSRNRSRVIKSDADRHRSRRSK SREMNRLIGGADRSPCIEDDVEESSHSQRGKNNDRKQTKGLDGRSYRESKSLKWDQNR EKNHDTSSDGGYSDSKRGKKIDRKRAKTLDGRSDRQRSLTWDQNSEEIHDTSSDGGYS DSKRGKKNDRKQAKTLDGRSDRQRGLKWDENSEKIHTTSSDGGYSDSKRGKENDRKQA KVLDGGRSDRQRSLTWDQNSEEIHDTSSYGGYSDSKRGKKNDRKQAKTLDGRSDRQRS LKCDENSEKIHDTSSDGSYSDSKRGKKNDRKRAKTLDGRSGRQRSLKWDENSEQIHYT SSDGGYSHSKRGKKNERKKAKLLDGRSDRHRSLKWDQNRERTLDTSSDEGYSERDIDA ARDADEVTHHCHAKEHSKHQSESLEYLADNRSFKNRDYEDTENSPAQTKKRTRHRSSK GG" gene 1456239..1467443 /locus_tag="TCM_027106" /note="dbxref CacaoGD:Thecc1EG027106" mRNA join(1456239..1456604,1456698..1456898,1456999..1457217, 1458273..1458611,1459122..1459226,1459897..1460007, 1460737..1460987,1461808..1461931,1462546..1462825, 1462918..1463072,1463799..1463939,1464055..1464287, 1464841..1465105,1466002..1466304,1466388..1466920, 1467320..1467443) /locus_tag="TCM_027106" /product="RNA helicase, ATP-dependent, SK12/DOB1 protein" /inference="alignment:exonerate- protein:2:ricco:29609.m000590" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039723t1" /inference="similar to AA sequence:ricco:29609.m000590" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc198t4" CDS join(1456344..1456604,1456698..1456898,1456999..1457217, 1458273..1458611,1459122..1459226,1459897..1460007, 1460737..1460987,1461808..1461931,1462546..1462825, 1462918..1463072,1463799..1463939,1464055..1464287, 1464841..1465105,1466002..1466280) /locus_tag="TCM_027106" /note="dbxref ricco:29609.m000590; paralog of Thecc1EG039723t1" /codon_start=1 /product="RNA helicase, ATP-dependent, SK12/DOB1 protein" /protein_id="EOY25727.1" /db_xref="TAIR:AT1G59760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0I2" /translation="MGSLKRKSEGEEASSESLPQKQHKGDGSVMADEAVGCVHEVSYP DGYVPSTSSTVPADSKPAKEFPFTLDPFQSEAIKCLDNGQSVMVSAHTSAGKTVVALY AIAMSLRNNQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEI WRSMQYKGSEVVREVAWIVFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNA KEFADWVAKVHKQPCHIVYTDYRPTPLQHYIFPAGGDGLFLVVDEKGKFREDSFQKAL NALVPTSESNKKRDNGKSQKGLVMGKVSEQSDIFKLVKMIIQRQYDPVIIFSFSKREC EFLAMQMAKMDLNDDDEKGNIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHS GLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSG EYIQMSGRAGRRGIDARGICILMVDERMEPSTAKTMLKGNADSLNSAFHLSYNMLLNQ LCCEDADPESMLRNSFYQFQADRAIPDLEKQIKALEEERDSMIIEEEDSLKNYYNLIR QYKSLKNDVRDIVFSPKYCLPYMKSGRPLCIQCIDDEKSPSFSIEDHVTWGVLMDFHR VKSVVEDDASRRPEDASYGLDILTRCAVSKDGLGKKKIKIVPLKEPGEPLVVSVPLSQ VISLSSARLNIPKDLLPLEARENALKKLLEFISRYANGMPLEPEEMNIQSNSYKKAVR RLEALENLFEKHEIAKSPLIEQKLKVLNGKEELTAKIRSIKKTMRSSTALAFKDELKA RKRVLRRLGYITSDDVVELKGKVACEISSADELTLTELMFSGIFKDVKAEEMVSLLSC LVWQEKLQDAAKPREELELLFTQLQDTARRIAKVQLECKVQIDVESFVSSFRPDIMEA VYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLISAAKSIGETELESKFEEAV SKIKRDIVFAASLYL" gene 1467625..1472387 /locus_tag="TCM_027107" /note="dbxref CacaoGD:Thecc1EG027107" mRNA join(1467625..1467918,1468010..1468389,1469167..1469222, 1469581..1469801,1469904..1470309,1470789..1470874, 1471055..1471118,1471204..1471316,1471545..1472387) /locus_tag="TCM_027107" /product="MBOAT (membrane bound O-acyl transferase) family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019857001" /inference="similar to AA sequence:Phytozome:GSVIVT01019857001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b026206t1a2; alternateUTRof:Thecc1EG027107t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc382t7" mRNA join(1467625..1468389,1469167..1469222,1469581..1469801, 1469904..1470309,1470789..1470874,1471055..1471118, 1471204..1471316,1471545..1472384) /locus_tag="TCM_027107" /product="MBOAT (membrane bound O-acyl transferase) family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019857001" /inference="similar to AA sequence:Phytozome:GSVIVT01019857001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc382t7" mRNA join(1467889..1467918,1468010..1468389,1469167..1469222, 1469532..1469801,1469904..1470309,1470789..1470874, 1471055..1471118,1471204..1471316,1471545..1471727) /locus_tag="TCM_027107" /product="MBOAT (membrane bound O-acyl transferase) family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019857001" /inference="similar to AA sequence:Phytozome:GSVIVT01019857001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc382t3; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc382t7" mRNA join(1467889..1467918,1468010..1468389,1469167..1469222, 1469581..1469801,1469904..1470309,1470789..1471118, 1471204..1471316,1471545..1471727) /locus_tag="TCM_027107" /product="MBOAT (membrane bound O-acyl transferase) family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019857001" /inference="similar to AA sequence:Phytozome:GSVIVT01019857001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc382t4; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc382t7" mRNA join(1467889..1467918,1468010..1468177,1468242..1468389, 1469167..1469222,1469581..1469801,1469904..1470309, 1470789..1470874,1471055..1471118,1471204..1471316, 1471545..1471727) /locus_tag="TCM_027107" /product="MBOAT (membrane bound O-acyl transferase) family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019857001" /inference="similar to AA sequence:Phytozome:GSVIVT01019857001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc382t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc382t7" CDS join(1468088..1468389,1469167..1469222,1469581..1469801, 1469904..1470309,1470789..1470874,1471055..1471118, 1471204..1471316,1471545..1471682) /locus_tag="TCM_027107" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="MBOAT (membrane bound O-acyl transferase) family protein isoform 1" /protein_id="EOY25728.1" /db_xref="Phytozome:GSVIVT01019857001" /db_xref="TAIR:AT1G12640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAN8" /translation="MELDMGTMAASIGVSVPVLRFLLCFVATIPVSFSWRLVPGRLAK HVYSAFSGALLSYLSFGFSSNLHFLVPMVLGYAAMVLYRPKCGVITFFLGFGYLIGCH VYYMSGDAWKEGGIDATGALMVLTLKVISCAINYNDGLLKEEGLREAQKKNRLIKLPS LIEYFGYCLCCGSHFAGPVYEMKDYLDWTEGKGIWAHSDKRSPSPYGATFRALVQASI CMAFYLYLVPYHPLTRFTEPIYQEWGLWRKLSYQYMSGFTARWKYYFIWSISEASIII SGLGFSGWTESSPPKPKWDRAKNVDILGVELAKSSVVLPLVWNIQVSTWLRHYVYERL ITKGRKPGFFQLLATQTVSAVWHGLYPGYIIFFVQSALMIAGSRVIYRWEQATNMALV KKAFVFMNFAYTLLVLNYSAVGFMVLSMHETLASYSSVYYIGTILPIALILLGYIIPA KPARSKARKEQ" CDS join(1468088..1468389,1469167..1469222,1469581..1469801, 1469904..1470309,1470789..1470874,1471055..1471118, 1471204..1471316,1471545..1471682) /locus_tag="TCM_027107" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="MBOAT (membrane bound O-acyl transferase) family protein isoform 1" /protein_id="EOY25731.1" /db_xref="Phytozome:GSVIVT01019857001" /db_xref="TAIR:AT1G12640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAN8" /translation="MELDMGTMAASIGVSVPVLRFLLCFVATIPVSFSWRLVPGRLAK HVYSAFSGALLSYLSFGFSSNLHFLVPMVLGYAAMVLYRPKCGVITFFLGFGYLIGCH VYYMSGDAWKEGGIDATGALMVLTLKVISCAINYNDGLLKEEGLREAQKKNRLIKLPS LIEYFGYCLCCGSHFAGPVYEMKDYLDWTEGKGIWAHSDKRSPSPYGATFRALVQASI CMAFYLYLVPYHPLTRFTEPIYQEWGLWRKLSYQYMSGFTARWKYYFIWSISEASIII SGLGFSGWTESSPPKPKWDRAKNVDILGVELAKSSVVLPLVWNIQVSTWLRHYVYERL ITKGRKPGFFQLLATQTVSAVWHGLYPGYIIFFVQSALMIAGSRVIYRWEQATNMALV KKAFVFMNFAYTLLVLNYSAVGFMVLSMHETLASYSSVYYIGTILPIALILLGYIIPA KPARSKARKEQ" CDS join(1468088..1468389,1469167..1469222,1469581..1469801, 1469904..1470309,1470789..1470961) /locus_tag="TCM_027107" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="MBOAT (membrane bound O-acyl transferase) family protein isoform 5" /protein_id="EOY25732.1" /db_xref="Phytozome:GSVIVT01019857001" /db_xref="TAIR:AT1G12640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAN8" /translation="MELDMGTMAASIGVSVPVLRFLLCFVATIPVSFSWRLVPGRLAK HVYSAFSGALLSYLSFGFSSNLHFLVPMVLGYAAMVLYRPKCGVITFFLGFGYLIGCH VYYMSGDAWKEGGIDATGALMVLTLKVISCAINYNDGLLKEEGLREAQKKNRLIKLPS LIEYFGYCLCCGSHFAGPVYEMKDYLDWTEGKGIWAHSDKRSPSPYGATFRALVQASI CMAFYLYLVPYHPLTRFTEPIYQEWGLWRKLSYQYMSGFTARWKYYFIWSISEASIII SGLGFSGWTESSPPKPKWDRAKNVDILGVELAKSSVVLPLVWNIQVSTWLRHYVYERL ITKGRKPGFFQLLATQTVSAVWHVSHFTLLKKFYDVHNTCHPFSFWYKTNL" CDS join(1468156..1468177,1468242..1468389,1469167..1469222, 1469581..1469801,1469904..1470309,1470789..1470874, 1471055..1471118,1471204..1471316,1471545..1471682) /locus_tag="TCM_027107" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="MBOAT (membrane bound O-acyl transferase) family protein isoform 2" /protein_id="EOY25729.1" /db_xref="Phytozome:GSVIVT01019857001" /db_xref="TAIR:AT1G12640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAN8" /translation="MFRGDDTGALLSYLSFGFSSNLHFLVPMVLGYAAMVLYRPKCGV ITFFLGFGYLIGCHVYYMSGDAWKEGGIDATGALMVLTLKVISCAINYNDGLLKEEGL REAQKKNRLIKLPSLIEYFGYCLCCGSHFAGPVYEMKDYLDWTEGKGIWAHSDKRSPS PYGATFRALVQASICMAFYLYLVPYHPLTRFTEPIYQEWGLWRKLSYQYMSGFTARWK YYFIWSISEASIIISGLGFSGWTESSPPKPKWDRAKNVDILGVELAKSSVVLPLVWNI QVSTWLRHYVYERLITKGRKPGFFQLLATQTVSAVWHGLYPGYIIFFVQSALMIAGSR VIYRWEQATNMALVKKAFVFMNFAYTLLVLNYSAVGFMVLSMHETLASYSSVYYIGTI LPIALILLGYIIPAKPARSKARKEQ" CDS join(1469589..1469801,1469904..1470309,1470789..1470874, 1471055..1471118,1471204..1471316,1471545..1471682) /locus_tag="TCM_027107" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="MBOAT (membrane bound O-acyl transferase) family protein isoform 3" /protein_id="EOY25730.1" /db_xref="Phytozome:GSVIVT01019857001" /db_xref="TAIR:AT1G12640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAN8" /translation="MVLTLKVISCAINYNDGLLKEEGLREAQKKNRLIKLPSLIEYFG YCLCCGSHFAGPVYEMKDYLDWTEGKGIWAHSDKRSPSPYGATFRALVQASICMAFYL YLVPYHPLTRFTEPIYQEWGLWRKLSYQYMSGFTARWKYYFIWSISEASIIISGLGFS GWTESSPPKPKWDRAKNVDILGVELAKSSVVLPLVWNIQVSTWLRHYVYERLITKGRK PGFFQLLATQTVSAVWHGLYPGYIIFFVQSALMIAGSRVIYRWEQATNMALVKKAFVF MNFAYTLLVLNYSAVGFMVLSMHETLASYSSVYYIGTILPIALILLGYIIPAKPARSK ARKEQ" mobile_element complement(1473953..1474022) /note="source:CACAO_Mutator_E161_scaffold_1 5680 5752" /mobile_element_type="transposon:TIR/Mutator" mobile_element 1473978..1474043 /note="source:scaffold_10_CACTA_0127 7398 7467" /mobile_element_type="transposon:TIR/CACTA" gene 1474665..1476506 /locus_tag="TCM_027108" /note="dbxref CacaoGD:Thecc1EG027108" mRNA join(1474665..1475126,1475234..1475490,1475606..1475752, 1475843..1476506) /locus_tag="TCM_027108" /product="BCL-2-associated athanogene 1, putative" /inference="alignment:exonerate- protein:2:ricco:30190.m011124" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015093t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s12150.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g401t2" CDS join(1474892..1475126,1475234..1475490,1475606..1475752, 1475843..1476097) /locus_tag="TCM_027108" /note="paralog of Thecc1EG015093t1" /codon_start=1 /product="BCL-2-associated athanogene 1, putative" /protein_id="EOY25733.1" /db_xref="Phytozome:POPTR_0003s12150.1" /db_xref="TAIR:AT5G52060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKN9" /translation="MMNSKVKGVCSMPNKKPVGGASEGSVNPKEWEVTPGGMLVQKRD SSSNQSSVPIPTIRVRVKHGSTYHEIRVSSQASFGELKKMLADHTGLHPLDQKLIYRK KERDSKAFLDVARVKDGSKMVLVEDIASKERRCLEMLKIAKMEKSSKSLLQIGLEVDK YAEQVKALETTVARGSKVQQMDVDHLTGLLMTSLVKLDELAVIGDLKSQKTMLERKLQ KQVETLDAMKLQNTMPRSKGDKIPVKQHEHSIGKGPIATQKEQTQEKQKSLIVQMPML QQTQRHSEQSVVFTTKWETFD" gene complement(1479075..1480774) /locus_tag="TCM_027109" /note="dbxref CacaoGD:Thecc1EG027109" mRNA complement(join(1479075..1479820,1480079..1480192, 1480299..1480774)) /locus_tag="TCM_027109" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30063.m001422" /inference="similar to AA sequence:ricco:30063.m001422" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1450t2" CDS complement(join(1479172..1479820,1480079..1480192, 1480299..1480480)) /locus_tag="TCM_027109" /note="dbxref ricco:30063.m001422" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /protein_id="EOY25734.1" /db_xref="TAIR:AT3G05390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0K4" /translation="MKGKTTQESKCFQCPIATITSSRMLVLVIVTNLLSVYISTGPFS LSTHSTHLPHLLLQDSTPCVEKPSEAMKFIDDFGSIAAMSDELRLAILPQKVPLGIIW DPYTCKSYQCLINRNKFPGHFDCKDCFDLQGREKRRWLYDRGLDYGIDQVLQTKPPRT IRIGLDIGGGSGTFAARMRERNITIITSSMNLDGPFNSFIASRGLIPIHVSVSQRLPF FDNTLDIVHSMHVLSNWIPDAMLELTLYDIYRVLRPGGLFWLDHFFCQGSQLNQTYVP MLGRIGFKKLRWNSGKKLDRGVDKNEWYFSALLEKPKT" mobile_element 1480869..1480972 /note="source:scaffold_2_CACTA_0256 18766 18862" /mobile_element_type="transposon:TIR/CACTA" gene complement(1481787..1487613) /locus_tag="TCM_027110" /note="dbxref CacaoGD:Thecc1EG027110" mRNA complement(join(1481787..1482308,1482526..1482723, 1482941..1483006,1483526..1483568,1484510..1484578, 1484913..1484988,1486194..1486449,1486535..1486578, 1486685..1486756,1487054..1487123,1487244..1487613)) /locus_tag="TCM_027110" /product="Sequence-specific DNA binding transcription factors,DNA binding,DNA binding isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024467001" /inference="similar to AA sequence:Phytozome:GSVIVT01024467001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g518t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g518t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc611t3" mRNA complement(join(1481787..1482308,1482526..1482723, 1482941..1483006,1483526..1483568,1484510..1484578, 1484704..1484823,1484913..1484988,1486194..1486449, 1486535..1486578,1486685..1486756,1487054..1487123, 1487244..1487613)) /locus_tag="TCM_027110" /product="Sequence-specific DNA binding transcription factors,DNA binding,DNA binding isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024467001" /inference="similar to AA sequence:Phytozome:GSVIVT01024467001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g518t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g518t5" mRNA complement(join(1481793..1482308,1482526..1482723, 1482941..1483006,1483526..1483568,1484510..1484578, 1484704..1484823,1484913..1484984,1486190..1486449, 1486535..1486578,1486685..1486756,1487054..1487123, 1487244..1487445)) /locus_tag="TCM_027110" /product="Sequence-specific DNA binding transcription factors,DNA binding,DNA binding isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024467001" /inference="similar to AA sequence:Phytozome:GSVIVT01024467001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00548t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g518t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc611t3" mRNA complement(join(1482069..1482723,1482941..1483006, 1483526..1483568,1484510..1484578,1484913..1484988, 1486194..1486449,1486535..1486578,1486685..1486756, 1487054..1487123,1487244..1487398)) /locus_tag="TCM_027110" /product="Sequence-specific DNA binding transcription factors,DNA binding,DNA binding isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024467001" /inference="similar to AA sequence:Phytozome:GSVIVT01024467001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01020t00002; alternateUTRof:Thecc1EG027110t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g518t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc611t3" CDS complement(join(1482534..1482723,1482941..1483006, 1483526..1483568,1484510..1484578,1484913..1484988, 1486194..1486449,1486535..1486578,1486685..1486756, 1487054..1487123,1487244..1487314)) /locus_tag="TCM_027110" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Sequence-specific DNA binding transcription factors,DNA binding,DNA binding isoform 3" /protein_id="EOY25737.1" /db_xref="Phytozome:GSVIVT01024467001" /db_xref="TAIR:AT2G36740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IP06" /translation="METGKEEETHVFLDPASRPTKGKRMTKLLDEEAEEDELFWNQEA FKEEDNDANYEEELEVADVFDSDFDEDEPEPDDEAENETEERVRTKKRLIFPGKPSMK KKKKKKVLSKLDGDPKDEKSTQKPTSPQHHDAPDDAEGERIIRKSTRTSVIVRQAERD AIRAALQATMKPVKRKKEGEEKRITQEEMLLEAAQTGCSYLEFSKGSSFQSELSTTLP PYPEKAICAVTGLPAKYRDPKTGLSYATKEAFKIIRERFENEHRSAPKEMDMGVLFDS LSGKGLMPRQRRSQISNRSQTSRFQYLGHFHRTPTDDDEESD" CDS complement(join(1482534..1482723,1482941..1483006, 1483526..1483568,1484510..1484578,1484913..1484988, 1486194..1486449,1486535..1486578,1486685..1486756, 1487054..1487123,1487244..1487314)) /locus_tag="TCM_027110" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Sequence-specific DNA binding transcription factors,DNA binding,DNA binding isoform 3" /protein_id="EOY25738.1" /db_xref="Phytozome:GSVIVT01024467001" /db_xref="TAIR:AT2G36740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IP06" /translation="METGKEEETHVFLDPASRPTKGKRMTKLLDEEAEEDELFWNQEA FKEEDNDANYEEELEVADVFDSDFDEDEPEPDDEAENETEERVRTKKRLIFPGKPSMK KKKKKKVLSKLDGDPKDEKSTQKPTSPQHHDAPDDAEGERIIRKSTRTSVIVRQAERD AIRAALQATMKPVKRKKEGEEKRITQEEMLLEAAQTGCSYLEFSKGSSFQSELSTTLP PYPEKAICAVTGLPAKYRDPKTGLSYATKEAFKIIRERFENEHRSAPKEMDMGVLFDS LSGKGLMPRQRRSQISNRSQTSRFQYLGHFHRTPTDDDEESD" CDS complement(join(1482534..1482723,1482941..1483006, 1483526..1483568,1484510..1484578,1484704..1484823, 1484913..1484988,1486194..1486449,1486535..1486578, 1486685..1486756,1487054..1487123,1487244..1487314)) /locus_tag="TCM_027110" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Sequence-specific DNA binding transcription factors,DNA binding,DNA binding isoform 1" /protein_id="EOY25735.1" /db_xref="Phytozome:GSVIVT01024467001" /db_xref="TAIR:AT2G36740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IP06" /translation="METGKEEETHVFLDPASRPTKGKRMTKLLDEEAEEDELFWNQEA FKEEDNDANYEEELEVADVFDSDFDEDEPEPDDEAENETEERVRTKKRLIFPGKPSMK KKKKKKVLSKLDGDPKDEKSTQKPTSPQHHDAPDDAEGERIIRKSTRTSVIVRQAERD AIRAALQATMKPVKRKKEGEEKRITQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRA IIHKPVYSGPQIKYVSKDGCSYLEFSKGSSFQSELSTTLPPYPEKAICAVTGLPAKYR DPKTGLSYATKEAFKIIRERFENEHRSAPKEMDMGVLFDSLSGKGLMPRQRRSQISNR SQTSRFQYLGHFHRTPTDDDEESD" CDS complement(join(1482534..1482723,1482941..1483006, 1483526..1483568,1484510..1484578,1484704..1484823, 1484913..1484984,1486190..1486449,1486535..1486578, 1486685..1486756,1487054..1487123,1487244..1487314)) /locus_tag="TCM_027110" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Sequence-specific DNA binding transcription factors,DNA binding,DNA binding isoform 2" /protein_id="EOY25736.1" /db_xref="Phytozome:GSVIVT01024467001" /db_xref="TAIR:AT2G36740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IP06" /translation="METGKEEETHVFLDPASRPTKGKRMTKLLDEEAEEDELFWNQEA FKEEDNDANYEEELEVADVFDSDFDEDEPEPDDEAENETEERVRTKKRLIFPGKPSMK KKKKKKVLSKLDGDPKDEKSTQKPTSPQHHDAPDDAEGERIIRKSTRTSVIVRQAERD AIRAALQATMKAIKRKKEGEEKRITQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRA IIHKPVYSGPQIKYVSKDGCSYLEFSKGSSFQSELSTTLPPYPEKAICAVTGLPAKYR DPKTGLSYATKEAFKIIRERFENEHRSAPKEMDMGVLFDSLSGKGLMPRQRRSQISNR SQTSRFQYLGHFHRTPTDDDEESD" gene complement(1488383..1489675) /locus_tag="TCM_027112" /note="dbxref CacaoGD:Thecc1EG027112" mRNA complement(1488383..1489675) /locus_tag="TCM_027112" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29609.m000589" /inference="similar to AA sequence:ricco:29609.m000589" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc79t2" CDS complement(1488662..1489159) /locus_tag="TCM_027112" /note="dbxref ricco:29609.m000589" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25739.1" /translation="MKMSKALKKLKFWSRKKRKRKSLGLEPSYPDSSHCHCCYSCAST QPSAPPLPSWLQAEPTQDAIHTADHAEPFPVPELSYPTLFQYPTQEDTVSETESHRSP ICPAPSYQQYLVPNPVYGLPVVQQAGRRERSAGFLGCVIDFGVDLIRCFCPCFRIREE VCRQL" gene complement(1489825..1497733) /locus_tag="TCM_027113" /note="dbxref CacaoGD:Thecc1EG027113" mRNA complement(join(1489825..1490826,1491256..1491446, 1491811..1492298,1492372..1492540,1492647..1492722, 1492802..1492921,1493522..1493686,1493780..1493870, 1494769..1494853,1494951..1495103,1495286..1495342, 1495432..1495527,1496282..1496397,1496757..1496844, 1497566..1497595,1497702..1497733)) /locus_tag="TCM_027113" /product="Auxin response factor 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g40270.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005126t1" /inference="similar to AA sequence:ricco:29609.m000587" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g529t3" CDS complement(join(1490655..1490826,1491256..1491446, 1491811..1492298,1492372..1492540,1492647..1492722, 1492802..1492921,1493522..1493686,1493780..1493870, 1494769..1494853,1494951..1495103,1495286..1495342, 1495432..1495527,1496282..1496397,1496757..1496793)) /locus_tag="TCM_027113" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29609.m000587; paralog of Thecc1EG005126t1" /codon_start=1 /product="Auxin response factor 1 isoform 1" /protein_id="EOY25740.1" /db_xref="TAIR:AT1G59750.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7G0" /translation="MAFAAPSAEQQAGIKDGPLYRELWHACAGPLVTLPREGERVYYF PQGHMEQLEASMHQGLEHQMPSFNLPSKILCKVASVQRKAEPDTDEVYAQLTLVPEVD QSEVTSSDPPLPEPERCIVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPP WQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGTNGEL RVGVRRLMRQQTNMPSSVISSHSMHLGVLATASHAIATGSMFSVFYKPRTSRSEFIVS VNKYLEARSHKLSVGMRFKMRFEGEEVPERRFSGTIIGVGDNKSSGWADSEWRSLKVQ WDEPSSILRPDRVSPWELEPLVVTNTSSNSQPAQRNKRARPPVLPTPSSDLSSLGMWK SPVESPAFSYCDSQRGHSSPKFSSTAKPNSVGFSGNGSVAAVSSNSMYWSNRVESVTE SFAPVVNKESCERKPGPGNGCRLFGIQLDNVNMEENSPVATVSGTVVDDRLVPSVDAD SDQLSDPSNLNRSDRPYVSCDPEKSCLRSPQESQSKQIRSCTKVHMQGMVVGRAVDLT RFDCYEDLLRKLEELFDIKGQLCGSARNWQVVYTDDEDDMMMVGDDPWNEFCSMVRKI FIYTSEEVKKLSPKIKLPVNDDSKPAKPGVDTVVNTDDRSSVVSPGC" mRNA complement(join(<1491953..1492298,1492372..1492540, 1492647..1492722,1492802..1492921,1493522..1493686, 1493780..1493870,1494769..1494853,1494951..1495103, 1495286..1495342,1495432..1495527,1496282..1496397, 1496757..1497588)) /locus_tag="TCM_027113" /product="Auxin response factor 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g40270.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005126t2" /inference="similar to AA sequence:Phytozome:POPTR_0004s23770.2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1037t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g529t3" CDS complement(join(<1491955..1492298,1492372..1492540, 1492647..1492722,1492802..1492921,1493522..1493686, 1493780..1493870,1494769..1494853,1494951..1495103, 1495286..1495342,1495432..1495527,1496282..1496397, 1496757..1496793)) /locus_tag="TCM_027113" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005126t2" /codon_start=1 /product="Auxin response factor 1 isoform 2" /protein_id="EOY25741.1" /db_xref="Phytozome:POPTR_0004s23770.2" /db_xref="TAIR:AT1G59750.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7G0" /translation="MAFAAPSAEQQAGIKDGPLYRELWHACAGPLVTLPREGERVYYF PQGHMEQLEASMHQGLEHQMPSFNLPSKILCKVASVQRKAEPDTDEVYAQLTLVPEVD QSEVTSSDPPLPEPERCIVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPP WQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGTNGEL RVGVRRLMRQQTNMPSSVISSHSMHLGVLATASHAIATGSMFSVFYKPRTSRSEFIVS VNKYLEARSHKLSVGMRFKMRFEGEEVPERRFSGTIIGVGDNKSSGWADSEWRSLKVQ WDEPSSILRPDRVSPWELEPLVVTNTSSNSQPAQRNKRARPPVLPTPSSDLSSLGMWK SPVESPAFSYCDSQRGHSSPKFSSTAKPNSVGFSGNGSVAAVSSNSMYWSNRVESVTE SFAPVVNKESCERKPGPGNGCRLFGIQLDNVNMEENSPVATVSGTVVDDRLVP" mobile_element 1499276..1499695 /note="source:scaffold_9_CACTA_0945 1332 1741" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1500005..1500308 /note="source:CACAO_on_SS_E135_scaffold_10 5489 5756" /mobile_element_type="transposon:TIR/Mutator" mobile_element 1501837..1502317 /note="source:scaffold_9_CACTA_0929 1 470" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1505511..1505742 /note="source:CACAO_M_E3884_F22_scaffold_1 12928 13129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1505740..1505837) /note="source:CACAO_M_E12463_F12_scaffold_3 4642 4741" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1509337..1514055) /locus_tag="TCM_027115" /note="dbxref CacaoGD:Thecc1EG027115" mRNA complement(join(1509337..1510038,1512348..1512439, 1513532..1513609,1513701..1514055)) /locus_tag="TCM_027115" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036736t1" /note="quality class is medium-utrpoor, express is none, homology is paralog strong, intron is none, protein is utrpoor_complete" mobile_element complement(1510313..1512409) /note="source:scaffold_8_CACTA_0857 1970 4078" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1511425..1513347) /note="source:INTACT190_F166_scaffold_7-int 3757 5709" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1513252..1513374 /note="source:CACAO_M_S_E100312_F82_scaffold_9 6476 6597" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(1513702..1513989) /locus_tag="TCM_027115" /note="paralog of Thecc1EG036736t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25742.1" /translation="MVEFFQGAKLPRVLTFTAIILLPKNPSASQWNEFKPISLCIILN KIVIKLLAKCVATILPSIITENQSGFVGSRLINDNILLAWELIRKINQKPR" mobile_element 1514318..1514717 /note="source:scaffold_4_CACTA_0482 4494 4903" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1514715..1515588 /note="source:scaffold_4_CACTA_0482 5026 5901" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1515660..1515891 /note="source:INTACT711_F307_scaffold_9-int 1784 1985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1515889..1515987 /note="source:scaffold_5_CACTA_0584 1926 2024" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1516026..1517157) /note="source:CACAO_on_E745_scaffold_10 1 1133" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 1519670..1538674 /locus_tag="TCM_027116" /note="dbxref CacaoGD:Thecc1EG027116" mRNA join(1519670..1520004,1520095..1520194,1521045..1521205, 1523677..1523874,1523963..1524055,1524387..1524503, 1525181..1525428,1526178..1526349,1527163..1527273, 1527428..1527631,1528309..1528471,1529500..1529590, 1529686..1529755,1536627..1536755,1537025..1537063, 1537874..1538674) /locus_tag="TCM_027116" /product="Mitotic checkpoint family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29609.m000583" /inference="similar to AA sequence:ricco:29609.m000583" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03660t00001" CDS join(1519816..1520004,1520095..1520194,1521045..1521205, 1523677..1523874,1523963..1524055,1524387..1524503, 1525181..1525428,1526178..1526349,1527163..1527273, 1527428..1527631,1528309..1528471,1529500..1529590, 1529686..1529755,1536627..1536755,1537025..1537063, 1537874..1537963) /locus_tag="TCM_027116" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29609.m000583" /codon_start=1 /product="Mitotic checkpoint family protein isoform 1" /protein_id="EOY25743.1" /db_xref="TAIR:AT5G49880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTY1" /translation="MILRTPPPKRQRGEAIVHESPSTVAASEGRLVIYEDNPPAALPP ESSQQPSDHLLCTYQCRQMVKAEFLYTLSNAEKQICDYKSKLEALNENFSKAEAERKK FRDQFLYAEQELAAAKGREQMLHAQLLNEVDDSQERFKNQLESYNELQKKLQNEMNLR KKAESSAASAEEKATVLEGKLSQLSQSIEREKKRLHNELAQLKGESKLSVSRISADLE KMEFRANNAEKESDILKEQLEDLKKQFNECLHQKSELEKKLSSFSFPEVTSTESNILI KHLQEELRNYESEVREARKLKSSHENIELLKAKLLEEKGRRERAESELSKLQELQISF NKLEDELSSWKLMMKDIPGVSCPEDIPVKFATLQKEVIDSTIKIGDANARLKQIEVAL DAAQLAKHDTETDAMLAKEKAEVLKSEVKRIELMLSVVTEERDKLRNVIDELKRPKNE EAGDEAASGNVVQELESSLAKKESCIKELQSNLHEQKEVNDRQHNEIKLLHDRLNNEA RRIKSLERESDRLCSEISLLESKLGHGDYSAANTKVLRMVNTLAVDNEAKQTIEALQT ELQKTKEKLQALEELKSQSGDTGKLVDSYISEKIMKLKEQIATLEKREERYKTVFADR ISVFRRACCELFGYKIVMDEHQRPNGIPVTHFTLQSIYAQSDDEKLEFEYESGNTNIL ANDYTAHPEISHQVDIFVRKMNSIPAFTANLTVESFNKRTLS" mRNA join(1519853..1520004,1520095..1520194,1521045..1521205, 1523677..1523874,1523963..1524055,1524387..1524503, 1525181..1525428,1526178..1526349,1527163..1527273, 1527428..1527631,1528309..1528480,1536627..1536755, 1537025..1537063,1537874..1537901) /locus_tag="TCM_027116" /product="Mitotic spindle assembly checkpoint protein MAD1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29609.m000583" /inference="similar to AA sequence:ricco:29609.m000583" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc661t2; inference alignment:Newbler:10:TSA:cgbaB_g03660t00001" mRNA join(<1519853..1520004,1520095..1520194,1521045..1521205, 1523677..1523874,1523963..1524055,1524387..1524503, 1525181..1525428,1526178..1526349,1527163..1527273, 1527428..1527631,1528309..1528471,1529500..1529590, 1529686..1529755,1537874..>1537901) /locus_tag="TCM_027116" /product="Mitotic spindle assembly checkpoint protein MAD1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29609.m000583" /inference="similar to AA sequence:ricco:29609.m000583" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc661t6; inference alignment:Newbler:10:TSA:cgbaB_g03660t00001" CDS join(<1519855..1520004,1520095..1520194,1521045..1521205, 1523677..1523874,1523963..1524055,1524387..1524503, 1525181..1525428,1526178..1526349,1527163..1527273, 1527428..1527631,1528309..1528471,1529500..1529590, 1529686..1529755,1537874..>1537900) /locus_tag="TCM_027116" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29609.m000583" /codon_start=1 /product="Mitotic spindle assembly checkpoint protein MAD1 isoform 2" /protein_id="EOY25744.1" /db_xref="TAIR:AT5G49880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTY1" /translation="EAIVHESPSTVAASEGRLVIYEDNPPAALPPESSQQPSDHLLCT YQCRQMVKAEFLYTLSNAEKQICDYKSKLEALNENFSKAEAERKKFRDQFLYAEQELA AAKGREQMLHAQLLNEVDDSQERFKNQLESYNELQKKLQNEMNLRKKAESSAASAEEK ATVLEGKLSQLSQSIEREKKRLHNELAQLKGESKLSVSRISADLEKMEFRANNAEKES DILKEQLEDLKKQFNECLHQKSELEKKLSSFSFPEVTSTESNILIKHLQEELRNYESE VREARKLKSSHENIELLKAKLLEEKGRRERAESELSKLQELQISFNKLEDELSSWKLM MKDIPGVSCPEDIPVKFATLQKEVIDSTIKIGDANARLKQIEVALDAAQLAKHDTETD AMLAKEKAEVLKSEVKRIELMLSVVTEERDKLRNVIDELKRPKNEEAGDEAASGNVVQ ELESSLAKKESCIKELQSNLHEQKEVNDRQHNEIKLLHDRLNNEARRIKSLERESDRL CSEISLLESKLGHGDYSAANTKVLRMVNTLAVDNEAKQTIEALQTELQKTKEKLQALE ELKSQSGDTGKLVDSYISEKIMKLKEQIATLEKREERYKTVFADRISVFRRACCELFG YKVDIFVRKMN" CDS join(1520002..1520004,1520095..1520194,1521045..1521205, 1523677..1523874,1523963..1524055,1524387..1524503, 1525181..1525428,1526178..1526349,1527163..1527273, 1527428..1527631,1528309..1528480,1536627..1536640) /locus_tag="TCM_027116" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29609.m000583" /codon_start=1 /product="Mitotic spindle assembly checkpoint protein MAD1 isoform 3" /protein_id="EOY25745.1" /db_xref="TAIR:AT5G49880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTY1" /translation="MVKAEFLYTLSNAEKQICDYKSKLEALNENFSKAEAERKKFRDQ FLYAEQELAAAKGREQMLHAQLLNEVDDSQERFKNQLESYNELQKKLQNEMNLRKKAE SSAASAEEKATVLEGKLSQLSQSIEREKKRLHNELAQLKGESKLSVSRISADLEKMEF RANNAEKESDILKEQLEDLKKQFNECLHQKSELEKKLSSFSFPEVTSTESNILIKHLQ EELRNYESEVREARKLKSSHENIELLKAKLLEEKGRRERAESELSKLQELQISFNKLE DELSSWKLMMKDIPGVSCPEDIPVKFATLQKEVIDSTIKIGDANARLKQIEVALDAAQ LAKHDTETDAMLAKEKAEVLKSEVKRIELMLSVVTEERDKLRNVIDELKRPKNEEAGD EAASGNVVQELESSLAKKESCIKELQSNLHEQKEVNDRQHNEIKLLHDRLNNEARRIK SLERESDRLCSEISLLESKLGHGDYSAANTKVLRMVNTLAVDNEAKQTIEALQTELQK TKEKLQALEELKSQSGIKHCNG" gene 1532686..1534020 /locus_tag="TCM_027117" /note="dbxref CacaoGD:Thecc1EG027117" mRNA 1532686..1534020 /locus_tag="TCM_027117" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.44 coverage" CDS 1532974..1533318 /locus_tag="TCM_027117" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25746.1" /translation="MISIGDKTTSFLHALVQGSVSIANKETVCTCAAEHYDFKDILQA LDDCIFHVEMTIKKKKCGVTLNGFEAIVEQLGFNSDELCKELHNVMDLKHGARWINGN GATTILTISRVR" mobile_element complement(1534558..1535783) /note="source:CACAO_on_E172_scaffold_5 1746 2989" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 1544010..1544126 /note="source:MITE_Unknow_2_14 1 110" /mobile_element_type="transposon:TIR/MITE" mobile_element 1544126..1544817 /note="source:MITE_Unknow_2_14 1 692" /mobile_element_type="transposon:TIR/MITE" gene 1548215..1554404 /locus_tag="TCM_027118" /note="dbxref CacaoGD:Thecc1EG027118" mRNA join(1548215..1548714,1550673..1550831,1551222..1551439, 1551717..1552157,1552682..1552839,1553091..1554404) /locus_tag="TCM_027118" /product="Major facilitator superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s00860.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036019t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s00860.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc977t1" CDS join(1548627..1548714,1550673..1550831,1551222..1551439, 1551717..1552157,1552682..1552839,1553091..1553988) /locus_tag="TCM_027118" /note="paralog of Thecc1EG036019t1" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY25747.1" /db_xref="Phytozome:POPTR_0003s00860.1" /db_xref="TAIR:AT1G59740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GVX9" /translation="MDLSALIPLSLILTFLPPHILSSPHSFDSQGEREREERGVQMEE GRRNNKVWVTEEESTVDWRGRPSNPNKHGGMRAAAFVLGLQAFEIMAIAAVGNNLITY VINEMHFSLSKSANIVTNFVGTIFLLALLGGYLSDSYLGSFWTMLIFGFVELSGFILL SVQAHLPQLKPPKCNMVIDGEHCVEAKGFKALIFFVALYLVALGSGCVKPNMIAHGAD QFNQTNPSQSKKLSTYFNAAYFAFSMGELIALTILVWIQTHAGMDVGFGVSAAAMAMA LISVVSGTLYYRNKPPQGSIFTPIAQVFVAAILKRKQICRPISNPQMLNGKQNSVPNR SASASHLHSESGNVLHTQRFRFLDKACIKVQDGSNTKESRWRLCSVAQVEQVKILLSV IPIFACTIVFNTILAQLQTFSVQQGSAMDTQLTKSFHIPPASLQSIPYIMLIFIVPLY DEFFVPFARKFTGNESGISPLLRIGSGLFLATFSMIAAAVMEKKRRDAAVGSGEIISI FWITPQFLIFGISEMLTAVGLIEFFYKQSLKGMQAFFTAITYCSYSFGFYLSSVLVSL VNKITSSGSSRGGWLSDNDLNKDRLDLFYWLLAVLSFLNFLNYLFWARWHSNSSPSGT AQNEAVEAGELSHFSLMRLSKDVGDEDIP" mobile_element complement(1557379..1557450) /note="source:CACAO_on_E33_A_scaffold_3 671 742" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 1559027..1569056 /locus_tag="TCM_027120" /note="dbxref CacaoGD:Thecc1EG027120" mRNA join(1559027..1560043,1560803..1560864,1561031..1561122, 1561219..1561298,1562188..1562238,1562893..1562967, 1563050..1563127,1565055..1565117,1565398..1565468, 1565550..1565715) /locus_tag="TCM_027120" /product="ATP-dependent Clp protease ATP-binding subunit clpX isoform 4" /inference="alignment:exonerate- protein:2:ricco:29609.m000575" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036036t2" /inference="similar to AA sequence:ricco:29609.m000575" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b026217t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1907t3" mRNA join(1559067..1560043,1560803..1560864,1561031..1561122, 1561219..1561298,1562188..1562238,1562893..1562967, 1563050..1563127,1565055..1565117,1565398..1565468, 1565550..1565649,1565813..1565917,1566136..1566198, 1566363..1566523,1566678..1566717,1566862..1567020, 1568692..1568981) /locus_tag="TCM_027120" /product="ATP-dependent Clp protease ATP-binding subunit clpX isoform 1" /inference="alignment:exonerate- protein:2:ricco:29609.m000575" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036036t2" /inference="similar to AA sequence:ricco:29609.m000575" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1907t3" mRNA join(1559244..1560043,1560803..1560864,1561031..1561122, 1561219..1561302,1562192..1562238,1562893..1562967, 1563050..1563127,1565055..1565117,1565398..1565468, 1565550..1565649,1565813..1565917,1566136..1566198, 1566363..1566485,1566862..>1566990) /locus_tag="TCM_027120" /product="ATP-dependent Clp protease isoform 3" /inference="alignment:exonerate- protein:2:ricco:29609.m000575" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036036t2" /inference="similar to AA sequence:ricco:29609.m000575" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1274t11_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1907t3" mRNA join(1559393..1560043,1560803..1560864,1561031..1561122, 1561219..1561298,1562188..1562238,1562893..1562967, 1563050..1563127,1565055..1565117,1565398..1565468, 1565550..1565649,1565813..1565917,1566136..1566198, 1566363..1566485,1566862..1567020,1568692..1569056) /locus_tag="TCM_027120" /product="ATP-dependent Clp protease isoform 2" /inference="alignment:exonerate- protein:2:ricco:29609.m000575" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036036t2" /inference="similar to AA sequence:ricco:29609.m000575" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1907t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1907t3" CDS join(1559531..1560043,1560803..1560864,1561031..1561122, 1561219..1561298,1562188..1562238,1562893..1562967, 1563050..1563127,1565055..1565117,1565398..1565468, 1565550..1565649,1565813..1565917,1566136..1566198, 1566363..1566523,1566678..1566717,1566862..1567020, 1568692..1568700) /locus_tag="TCM_027120" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29609.m000575; paralog of Thecc1EG036036t2" /codon_start=1 /product="ATP-dependent Clp protease ATP-binding subunit clpX isoform 1" /protein_id="EOY25748.1" /db_xref="TAIR:AT5G49840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTA9" /translation="MLSLAKHTARALTTAIRRRKTTVGVTSLWSISRQKWDGVEYDHI RADVNCPRCFNQMPVLFSNRPLSITAREPGLYQALNLCPNCKTAFYFRPFKLVPLQGS FVELGRIMGDAEGISGKEPGQIGKLSDGNDDADEDKDDVARRLERELPTPKEICGRLD EFVIGQQKAKKVLSVAVYNHYKRIYHASQQNEACILGDDENDANDFVELDKSNVLLIG PTGSGKTLLAKTLARIVNVPFVIVDATTLTQAGYVGEDVESILYKLLVEAEFDVEAAQ HGIVYIDEVDKITKKAESSNIGRDVSGEGVQQALLKLLEGTIVNVPLPDKGARRYPRG DSFQIDTKDILFVCGGAFIDLEKTISERRQDSSIGFGAPVRANMRSSGLTTAAVTSSL LESVESDDLIAYGLIPEFIGRFPILVSLSGLNEDQLVEVLMKPKNALGKQYKKMFSMN GVKLHFTANALRLISKKAMAKNTGARGLRAILENILTEAMFEVRIWFLLSFGVMTTIQ DEGLFSFSPEIPDTKMESQGVNAVLVDEEAVGSFDETGCGAKILYGDGELDRFLAKRT WKDFVTA" CDS join(1559531..1560043,1560803..1560864,1561031..1561122, 1561219..1561298,1562188..1562238,1562893..1562967, 1563050..1563127,1565055..1565117,1565398..1565468, 1565550..1565649,1565813..1565917,1566136..1566198, 1566363..1566485,1566862..1567020,1568692..1568700) /locus_tag="TCM_027120" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29609.m000575; paralog of Thecc1EG036036t2" /codon_start=1 /product="ATP-dependent Clp protease isoform 2" /protein_id="EOY25749.1" /db_xref="TAIR:AT5G49840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTA9" /translation="MLSLAKHTARALTTAIRRRKTTVGVTSLWSISRQKWDGVEYDHI RADVNCPRCFNQMPVLFSNRPLSITAREPGLYQALNLCPNCKTAFYFRPFKLVPLQGS FVELGRIMGDAEGISGKEPGQIGKLSDGNDDADEDKDDVARRLERELPTPKEICGRLD EFVIGQQKAKKVLSVAVYNHYKRIYHASQQNEACILGDDENDANDFVELDKSNVLLIG PTGSGKTLLAKTLARIVNVPFVIVDATTLTQAGYVGEDVESILYKLLVEAEFDVEAAQ HGIVYIDEVDKITKKAESSNIGRDVSGEGVQQALLKLLEGTIVNVPLPDKGARRYPRG DSFQIDTKDILFVCGGAFIDLEKTISERRQDSSIGFGAPVRANMRSSGLTTAAVTSSL LESVESDDLIAYGLIPEFIGRFPILVSLSGLNEDQLVEVLMKPKNALGKQYKKMFSMN GVKLHFTANALRLISKKAMAKNTGARGLRAILENILTEAMFEIPDTKMESQGVNAVLV DEEAVGSFDETGCGAKILYGDGELDRFLAKRTWKDFVTA" CDS join(1559531..1560043,1560803..1560864,1561031..1561122, 1561219..1561302,1562192..1562238,1562893..1562967, 1563050..1563127,1565055..1565117,1565398..1565468, 1565550..1565649,1565813..1565917,1566136..1566198, 1566363..1566485,1566862..>1566990) /locus_tag="TCM_027120" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29609.m000575; paralog of Thecc1EG036036t2" /codon_start=1 /product="ATP-dependent Clp protease isoform 3" /protein_id="EOY25750.1" /db_xref="TAIR:AT5G49840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTA9" /translation="MLSLAKHTARALTTAIRRRKTTVGVTSLWSISRQKWDGVEYDHI RADVNCPRCFNQMPVLFSNRPLSITAREPGLYQALNLCPNCKTAFYFRPFKLVPLQGS FVELGRIMGDAEGISGKEPGQIGKLSDGNDDADEDKDDVARRLERELPTPKEICGRLD EFVIGQQKAKKVLSVAVYNHYKRIYHASQQNEACILGDDENDANDFVELDKSNVLLIG PTGSGKTLLAKTLARIVNVPFVIVDATTLTQASYVGEDVESILYKLLVEAEFDVEAAQ HGIVYIDEVDKITKKAESSNIGRDVSGEGVQQALLKLLEGTIVNVPLPDKGARRYPRG DSFQIDTKDILFVCGGAFIDLEKTISERRQDSSIGFGAPVRANMRSSGLTTAAVTSSL LESVESDDLIAYGLIPEFIGRFPILVSLSGLNEDQLVEVLMKPKNALGKQYKKMFSMN GVKLHFTANALRLISKKAMAKNTGARGLRAILENILTEAMFEIPDTKMESQGVNAVLV DEEAVGSFDETGCGAKILYGDGELDRF" CDS join(1559531..1560043,1560803..1560864,1561031..1561122, 1561219..1561298,1562188..1562238,1562893..1562967, 1563050..1563127,1565055..1565117,1565398..1565468, 1565550..1565676) /locus_tag="TCM_027120" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29609.m000575; paralog of Thecc1EG036036t2" /codon_start=1 /product="ATP-dependent Clp protease ATP-binding subunit clpX isoform 4" /protein_id="EOY25751.1" /db_xref="TAIR:AT5G49840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTA9" /translation="MLSLAKHTARALTTAIRRRKTTVGVTSLWSISRQKWDGVEYDHI RADVNCPRCFNQMPVLFSNRPLSITAREPGLYQALNLCPNCKTAFYFRPFKLVPLQGS FVELGRIMGDAEGISGKEPGQIGKLSDGNDDADEDKDDVARRLERELPTPKEICGRLD EFVIGQQKAKKVLSVAVYNHYKRIYHASQQNEACILGDDENDANDFVELDKSNVLLIG PTGSGKTLLAKTLARIVNVPFVIVDATTLTQAGYVGEDVESILYKLLVEAEFDVEAAQ HGIVYIDEVDKITKKAESSNIGRDVSGEGVQQALLKLLEGTIVNVPLPDKGARRYPRG DSFQIDTKDILFVCGGAFIDLEKTISERRQDSSIGFGAPVRANMRSSGLTTAAVTSSL LESVRIKTQDG" mobile_element 1562394..1562442 /note="source:CACAO_M_E85113_F12_scaffold_10 11806 11854" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1572161..1587220) /locus_tag="TCM_027121" /note="dbxref CacaoGD:Thecc1EG027121" mRNA complement(join(1572161..1572540,1573249..1573792, 1573947..1574631,1575573..1576829,1576947..1577187, 1578531..1578640,1578741..1579830,1581649..1582214, 1586960..1587220)) /locus_tag="TCM_027121" /product="Disease resistance protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT5G17680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027123t1" /inference="similar to AA sequence:Phytozome:Glyma16g03780.1" /note="quality class is strong-expresste, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1995t1" CDS complement(join(1573788..1573792,1573947..1574631, 1575573..1576829,1576947..1577187,1578531..1578640, 1578741..1579830,1581649..1582133)) /locus_tag="TCM_027121" /note="paralog of Thecc1EG027123t1" /codon_start=1 /product="Disease resistance protein, putative" /protein_id="EOY25752.1" /db_xref="Phytozome:Glyma16g03780.1" /db_xref="TAIR:AT5G17680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N1M5" /translation="MLTSSPSSFSSSSQWKYDVFLSFRGEDTRKSFTDHFYTCLKDHG IITFKDDEKLEQGESVAPKLVEAIRESWCSIIVFSETYASSSWCLNELVEILKQKNES GHKVFPVFYHINPSDLRNQRGNVKEAFAKHEGRHNQDATQRWRNALSEAANISGWHLK DSSESQFIRGIVKKISEKLVPIRSRVPDNLIGIRSRLVELCDKIKFGEDDVRIVGICG MGGIGKTTLAKVVYTQMSGCFEGKCFFAGVREVAMNSGLDSLQKQLLSKMFPGEEFRF STDYEGNEIICRKLRNKKVIVVIDDAANIQQLECLAKREWFGLGSRIIITTRDEHLLQ EYGVDDVYKPTTLNDLEALRLLSLKAFKSNTPKDDFKLLSRGVVKYAGGLPLALEVLG SFLCNRSAAEWRSAIDRLKSEPEEKIHGRLTISFDGLKEKEKNIFLDIAHFFKGWDRD FVTEILDGCGYNSGIGLQVLIERSLITVENNKIWMHDLLQEMGRYIVQQKSPNEPGRR CRLSEESDVHQVLTQNSGTEAIEGMVINSTTVYKYIPPFIKEAIEGLVINSTIGEQNE TFILRADAFLKMKKLKLLMVHGLLKSCDLTYLSNELRLFEWPGCPLKSLPRCFQPNNL VALLLPDSCINQLWKGSKLLNKLKFIDLQGSRKLIRTPDLTSAENLESLNLEGCTNLG HVHPSITLLPKLKLLNLRNCTSLKSLATKIRMESLETFVLSSCSNLRRFPKIIGEMKC LLELYLDGTSIKKLPSSFGHLSNLKVLNLSSCSKLENLPDFTMIENLESLNLEGCISL VDVHPSISILPKLKLLNLRNCTSLRSLSINNEMESLETLILSGCKNLKRFPEITRKME HLLELHIDATGIEELPSSVENLSSLKVLNLSGYSVLENSPPSFLQWIHRNGCRVLLSS QNHKLSKKSPNSLALRLPRLSGFSSLTELDISGRNLCEGALPSDICSLFSLEKLILKD NNFVSLPTNLCQLSNLHLLELADCNKLVTLPQLPSSINAVGLDGCASLEIVPNLAKAN TALNKIHYYGVNCFKLAANNNALRMLKGHLKIVANARQMFDILIPGSEIFEWFSYQNE ECSVRIPNLQNDIQWMGFALCCALVPASNNDAWTGEEINCIIKIHFEDFACEVPTAGY LFNSKSGQISEDHLWLRYLPRDILDNFVEVRCIFDLFNKFFEDQSSFDSLENFFENRS SQFEILRSGDWIRSCIGIEILFETLGIGTKVNKCGVRLVYPSDLEDLDPTMEQPSTST SPNSHHTRQHATHGLSKKGKENLDGSTG" mobile_element complement(1580032..1580848) /note="source:scaffold_5_CACTA_0607 4006 4843" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1580807..1581474 /note="source:scaffold_9_CACTA_0934 13572 14253" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1585484..1586528 /note="source:CACAO_hAT_E2565_scaffold_6 1 1045" /mobile_element_type="transposon:TIR/hAT" mobile_element 1591621..1592374 /note="source:CACAO_M_E52269_F115_scaffold_7 1 750" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1592475..1594800) /note="source:CACAO_M_S_E88063_F115_scaffold_7 1 2379" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1594174..1598576 /locus_tag="TCM_027122" /note="dbxref CacaoGD:Thecc1EG027122" mRNA join(1594174..1594245,1594681..1594871,1595163..1595591, 1595687..1595803,1595959..1596375,1597153..1597229, 1597810..1598576) /locus_tag="TCM_027122" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(1594737..1594871,1595163..1595591,1595687..1595803, 1595959..1596375,1597153..1597229,1597810..1597918) /locus_tag="TCM_027122" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25753.1" /translation="MSSYQDIEAVVTNSKVVPGRDITPIKSMLASLPNLYMSFFQMPI GGNITKPITLEGDEHRTLREGIGYIIGEGKNVHFWTEEWIKWRILKKDFLRIFALATI KEGKVKEFGVWVDGLWQWRIELRRMLFGWEKEQRENLLKVIMENPVISGYDDKVIWKG STSGEYLVSSFCRTMASKEKTSDDIWKKVIERRFSSLYALPRKEETVDHLFFECKVEK SGLDKGVDEVWDGKQCLDLVMARVTWWTKARWPEECHQTVEQSRNFDLDKAKIRNENK KEKMKWQPPKKGSLKFNVDGATRGMSGQATIGRVLRDEGGAIKVMFSKFIRIADANTA EVLAIREAFKIFGASKWVRSHVLIVESNSSNAVSGFIRHNLFPLEFVLVCLSWMIPSS HPRQRLGHQARWFACLSLTVASDGVPWFYGGFDSR" gene complement(1599939..1610262) /locus_tag="TCM_027123" /note="dbxref CacaoGD:Thecc1EG027123" mRNA complement(join(1599939..1600833,1601835..1603091, 1603205..1603442,1604710..1604753,1604867..1605962, 1606747..1607434,1610003..1610262)) /locus_tag="TCM_027123" /product="Disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400037912" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027121t1" /inference="similar to AA sequence:Phytozome:Glyma16g03780.1" /note="quality class is strong-expresste, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS complement(join(1600294..1600833,1601835..1603091, 1603205..1603442,1604710..1604753,1604867..1605962, 1606747..1607249)) /locus_tag="TCM_027123" /note="paralog of Thecc1EG027121t1" /codon_start=1 /product="Disease resistance protein, putative" /protein_id="EOY25754.1" /db_xref="Phytozome:Glyma16g03780.1" /db_xref="TAIR:AT5G17680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N1M5" /translation="MEDDGIVLTSSPSSSSSSSQWKYDVFLSFSGEDTRKGFTDHLYS CLIEKGLITFRDDPKLEQGKSIAPELLKAIGGSWCSIIVFSKTYAFSSWCLDELVEIL KQKKESGHEIYPVFYDVEPRELRKQEGSVEEAFAEHEKRYNQDKTRRWRDALLEASCI TGWELKDRYESEFIQDVVRVISKKICQTYSSVRNDLIGINSRLVELRDKICFRKDDVR IVGICGMGGIGKTTLARVVYNQMSGYFEGKCFLADVREVAMKSGLVSLQKQLLSLLLP EQDFQFFSVEDGIEIIRRRLRHKMVLVVIDDADNMQHFKCLVEKRDWFGLGSRIIITS RDEHLLLHSYEVDDVYKPTTLDDSEALQLLSLKAFKSDTPKDDFISLSESVVEYASGL PLALEVLGSFLCGRGAAQWRSAIDRLKSEPNNRILNCLQISFDGLTDTEKNIFLDIAH FFKGRDRDFVKEILDGCGYYPDIGLDVLIERSLVIVKYNKIWMHDLLQEMGRNIVRQK SLGEPGKRCRLSEDSDVYQVLTQNSGTEAIEGMVINNTIGVYKTFTLRADAFLKMRKL RLLMVHGLLKACDHIYLSNELRLFEWLGCPLKSLPWDFQPDNLVALLLPNSCIKQLWN GDRHLNKLKFLDLQGSRKLIRTPDFTTTENLESLNLTGCTNLVHVHPSTAFLPKLKLL NFRNCISLKSLPTKIRMQSLETFILSGCSNLRRFPEITGEMECLLELYLDGTSIKELT SSFGHLSNLKVLNLSGCSELENLPDFRMMENLESLNLEGCTSLAHVHPSIAFSPKLKL LNLRNCKSLKSLPTKIGMESLEILILSGCKNLQRFPEITGKMEHLLEVHLDGTSMEEL PSSVGNLSSLKVLDLSGCSVLEDSPPSFLQWIYRKGCGVLLSSLNPMLLKKSLNSMAL KLPRLSSLSSLRELNISDRNLCEGALPSAICCLSSLVTLILKDNNFVSLPTNLCQLPK LYLLELGGCKKLETLPQLPSSIIAVGLDGCASLEIVPNPTKTYTASYTIHYYGVNCFK LAANDNALRMLKGHLKAVANARQEFDIVIPGSEIFEWFSHQSEECSVMIPNLQNDIQW MGFALCCALVPVSNNVAWRREQISCTIKIHFEGFTCRTPTAGYYFKSKSGQISEDHLW LRYLHRDILDNILKHKSGQYEILRSGDWIRSCIGIEILFETLGIGTKVNKCGARLVYP SDLKDLDPTMEQPSKKRKRHD" gene 1610319..1629240 /locus_tag="TCM_027124" /note="dbxref CacaoGD:Thecc1EG027124" mRNA join(1610319..1610421,1612321..1612443,1612711..1612869, 1620341..1620431,1620707..1621729,1621978..1622049, 1627153..1627232,1628553..1629240) /locus_tag="TCM_027124" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003164t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.18 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2037t1" CDS join(1612435..1612443,1612711..1612869,1620341..1620431, 1620707..1621729,1621978..1622049,1627153..1627232, 1628553..1628669) /locus_tag="TCM_027124" /note="paralog of Thecc1EG003164t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25755.1" /translation="MFEIPDTKMESHGVNAVLVDEEAVGLVDETGCGAYILYGDGELD RFLAKRTLKHFVWAKHDSPPRGYRGKGYLYQIVWSHPMNPLIGIEMPPRMQTASRGIR GFNALDDTMKGPRASFFRNDRRGGLRGRIVGPQSSQNSNERRVGTSFGDTGGDYPEEP TATLEEIVAGLRGLTQEFAEFRKQRVYQSNETMGSSFEDSDYQPYREIDRGNVMVTLG DFMILKLPSFLGTKSTKDPQVFLDEMDKICTALGCSSLQVVELTGFRLTEVVQIWFAT LKRCKPPSSAPFTWEEFTQAFMDRFLPESVRDAKTQEFETLMQALGMTVSDYDIQFTQ LSRYALYLVQTEKERIKRFIKGLHEPIYKILVSQRFQSYPEVVDAARKLEARRKEVGA ERERSKRNRGEGSSKYRDPSRGKDANIVGQQGRRDEFAYNNSYQVSIKMAPFEALYGQ KCSEQITLIKVQRLCLKIGIRSTSTPRTKVRKLIREPCEVSIGIRVKNVCRGFAAVVM GLMESFGS" mobile_element 1618264..1620289 /note="source:INTACT160_F4_scaffold_7-int 12876 14939" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1620494..1621887 /note="source:INTACT160_F4_scaffold_7-int 7652 9046" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1621870..1624032 /note="source:INTACT160_F4_scaffold_7-int 11948 14194" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1624742..1625754) /note="source:CACAO_M_E84995_F60_scaffold_10 10359 11389" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1625782..1626224 /note="source:CACAO_M_E50229_F33_scaffold_7 1 445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1625828..1628671) /note="source:CACAO_M_E52258_F247_scaffold_7 1 2854" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1629323..1630032) /locus_tag="TCM_027125" /note="dbxref CacaoGD:Thecc1EG027125" mRNA complement(join(1629323..1629353,1629466..1630032)) /locus_tag="TCM_027125" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027134t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage" CDS complement(1629477..1629923) /locus_tag="TCM_027125" /note="paralog of Thecc1EG027134t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25756.1" /translation="MIPNLQNDIQWMGFSLCCALVRTSNNVAWRGEVIECTIKIHFEG FACEIPTAGYTFNSKSGQISEDHLWLRYLPRDILDNFLKHQSGQYEISQSGDWIRSCI GIEILFETLGIGTKVNKCGARLVYPSDLEDLDPTMEQPSKKRKKYD" mobile_element 1632776..1632932 /note="source:CACAO_Mariner_E176_scaffold_6 169 322" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(1636372..1636409) /note="source:INTACT901F_F95_scaffold_6-int 11468 11505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1636488..1639296 /note="source:INTACT706_F73_scaffold_9-int 3822 6647" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1639294..1639612 /note="source:CACAO_M_E52822_F73_scaffold_8 2380 2702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1640835..1641438 /note="source:CACAO_M_E22627_F73_scaffold_3 328 932" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1641674..1644086) /locus_tag="TCM_027128" /note="dbxref CacaoGD:Thecc1EG027128" mRNA complement(join(1641674..1641823,1642470..1642586, 1642696..1642842,1642928..1643198,1644030..1644086)) /locus_tag="TCM_027128" /product="Cullin-associated and neddylation dissociated" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046820t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s00810.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2069t1" CDS complement(join(1641698..1641823,1642470..1642586, 1642696..1642842,1642928..1642930)) /locus_tag="TCM_027128" /note="paralog of Thecc1EG046820t1" /codon_start=1 /product="Cullin-associated and neddylation dissociated" /protein_id="EOY25757.1" /db_xref="Phytozome:POPTR_0003s00810.1" /db_xref="TAIR:AT2G02560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L5Y6" /translation="MVRTTSPAAFTTATVVIAVKYSIVEQLEKIDEIIYPEIASFLML IKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLHDQTIVKQELIRTVDLGPFK HIVDDALELRKAAFECADTLLDSCLDRD" mobile_element complement(1643911..1644312) /note="source:CACAO_M_E84995_F60_scaffold_10 10359 10763" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1644335..1644804 /note="source:INTACT19F_F94_scaffold_1-int 1848 2321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1644384..1647234) /note="source:CACAO_M_E23320_F247_scaffold_4 1 2879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1647599..1650547 /note="source:CACAO_M_E44305_F33_scaffold_6 1 2949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1651094..1658205) /note="source:CACAO_M_E42630_F86_scaffold_5 549 7640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1658307..1658856) /note="source:CACAO_M_E49548_F86_scaffold_7 1 549" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1664383..1667460) /locus_tag="TCM_027129" /note="dbxref CacaoGD:Thecc1EG027129" mRNA complement(join(1664383..1664623,1665872..1665915, 1666016..1667114,1667348..1667460)) /locus_tag="TCM_027129" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011051" /note="quality class is weak, express is weak, homology is none, intron is weak, protein is noncode_complete; similar to RNA sequence, EST 0.31 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc845t28" mobile_element 1664794..1664930 /note="source:CACAO_Mariner_E176_scaffold_6 169 322" /mobile_element_type="transposon:TIR/Tc1-Mariner" CDS complement(1666027..1666134) /locus_tag="TCM_027129" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25758.1" /translation="MICYKRWEDILFNKSLLMNLANDVDCLRKVMFIKC" mobile_element complement(1667406..1667431) /note="source:scaffold_9_CACTA_0934 6693 6714" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1667432..1670149 /note="source:CACAO_M_E44306_F73_scaffold_6 1 2718" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1678776..1681465 /note="source:CACAO_M_E12258_F281_scaffold_3 1 2662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1679186..1681888) /note="source:scaffold_4_CACTA_0503 3237 5929" /mobile_element_type="transposon:TIR/CACTA" gene complement(1684053..1692677) /locus_tag="TCM_027131" /note="dbxref CacaoGD:Thecc1EG027131" mRNA complement(join(1684053..1684562,1684666..1685576, 1685667..1685761,1685867..1686173,1687594..1687637, 1687748..1688843,1692471..1692677)) /locus_tag="TCM_027131" /product="Disease resistance (TIR-NBS-LRR class)-like protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g16450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027133t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012762001" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete" CDS complement(join(1684147..1684562,1684666..1685576, 1685667..1685761,1685867..1686173,1687594..1687637, 1687748..1688843,1692471..1692592)) /locus_tag="TCM_027131" /note="paralog of Thecc1EG027133t1" /codon_start=1 /product="Disease resistance (TIR-NBS-LRR class)-like protein" /protein_id="EOY25759.1" /db_xref="Phytozome:GSVIVT01012762001" /db_xref="TAIR:AT5G17680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BTU2" /translation="MKNLSNSIEALKTNIRNLSFVHINKEANSLADGLAKAGFIRYES EFIGGVVKKISTKVYQARSSVPNDLIGIHSRLDELYDKIDFEEDRDIRIVGICRMGGI GKTTLASVVYTQMSGYFEGKCFLAGVREVAMKSGLVSLQEQLLSKIFPREEFKVSSVY DGIEIISRRLRHKNVLVVIDDAENIQHFKWLAEKRDWFGLGSRIIITTRDEHLLRVYG VDDVYKPTTLDESESLQLLSLKAFNSDALENDFISLCKTVVEYAGGHPLALEVLGSFL CARGAAQWRSAIGRLKSEPDNRIHNCLQISFDGLSEIEKKIFLEIAHFFNRWDRDFVT KILDGCGYYPDIGLDVLIKKSLITVECNKIWMHDLLQEMGRYIVRQKSLDEPSKGCRL SEESDVYQVLTQNSGTEAIEGMVINSITRLFNCYICCEAHLSVFPCLSFLREQNKTFT LNADAFSKMTKLRLLIVRGLFKSSNLRYLSKELRFFDWFGCPLESLPSGFQPNNLVAL LLPNSCIERLWEGKRPLNKLKIVNLQHSPKLIRTSDFTMAKNLESLDLRSLPTKIGME SLETLILSGCSKLEHLADFTMTKNLKSLNLEGCTSLVDVHPSIAFLPKLKLLNLRICT SLKSLPTSIGMKSLETLILSSCSYLRRFPEIAEEMECLLELFLDGTGIEVLPSSLGHL SSLVLLDLKDCKNLVSLRNNINGLKCLKVLNLSGCSKLESLPDFTMIKNLKNLNLEGC TSLVDVHPSIAFLPKLKLLNLRDCKCIWSLPAKIGMESLETLILSGCTNLQRFPEITK KMELLQELYLDGTSIEELPSSIGDLSSLKVLNLSSCSVFENLPPSFLQRIYKKGCRVP LPSEGALPNDICCLSSLETLILTHNNFVSLPANLCQLTKLLRLELWDCKKLESLPEIP SSIKAVGLGGCASLETVPNPTKPNNPWKRRSYNPIWSKAYCYSVNCFKLVGNDNALGM LKGHIKVYFLNSLTLNSQEFIVVN" mobile_element 1686348..1686464 /note="source:CACAO_Mariner_E176_scaffold_6 169 283" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(1689659..1689696) /note="source:INTACT901F_F95_scaffold_6-int 11468 11505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1690987..1691371) /note="source:INTACT901F_F95_scaffold_6-int 11464 11813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1693720..1696681) /note="source:INTACT118_F5_scaffold_9-int 9402 12396" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1698008..1698100 /note="source:CACAO_Mariner_E176_scaffold_6 1529 1628" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(1702154..1703397) /note="source:CACAO_M_E45129_F33_scaffold_6 1705 2907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1703398..1704350 /note="source:CACAO_M_E44310_F87_scaffold_6 1 953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1704451..1706229 /note="source:CACAO_M_E44310_F87_scaffold_6 954 2732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1706230..1707980 /note="source:CACAO_M_E68911_F33_scaffold_9 1198 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1706543..1751606) /locus_tag="TCM_027133" /note="dbxref CacaoGD:Thecc1EG027133" mRNA complement(join(1706543..1706576,1708622..1709145, 1710074..1711330,1711449..1711689,1712898..1712941, 1713042..1714140,1714627..1714744,1717583..1717715, 1718619..1718735,1718939..1719088,1719506..1719746, 1723317..1723913,1751275..1751606)) /locus_tag="TCM_027133" /product="Disease resistance protein" /inference="alignment:exonerate- protein:2:ricco:30074.m001359.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027123t1" /inference="similar to AA sequence:Phytozome:Glyma16g03780.1" /note="quality class is medium-expresste, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc845t34" CDS complement(join(1708633..1709145,1710074..1711330, 1711449..1711689,1712898..1712941,1713042..1714140, 1714627..1714744,1717583..1717715,1718619..1718735, 1718939..1719088,1719506..1719746,1723317..1723744)) /locus_tag="TCM_027133" /note="paralog of Thecc1EG027123t1" /codon_start=1 /product="Disease resistance protein" /protein_id="EOY25760.1" /db_xref="Phytozome:Glyma16g03780.1" /db_xref="TAIR:AT5G17680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N1M5" /translation="MGGIGKTTLAKIVYTQMSSDFEDKCLTVSMESELVSLQKKFLSE MFPGKEFRFSTDYEGNEIIRCWLRNKQVFVVIAGAADIRPLESLAKHEWFGLGSRTII TTRNEHLLRVDVADDVYKSTTVNDSESLWLLSLKAFDSDKPEQNETFTLSADAFLKMK KLRLLIVRGVLEFCDLVYLSNELRVLGWLKYPLKSLPWAFHPDNLVVLLLPNSCIAQL WEGNKKLYLDGTGIEELPSSVGHLGSLEVLNLSDCSKLENLSTSLIRRKYRMGRGPTC KSLSTCQDSSSRIAVCKKLETLPELQCQLKGKATKAVKKCGARLVHRSDIEDMDLTIE QPSTPTSPTFHHVHQHTTHGLTGNVKEAFAKHEDRYNQDKTQSWRDALSEAANISGWH LEDRYESEFIGLIIKKISTKLCQTRSSVPNDLIGIDSRLDKLCDKIDFGEDRDILIVG ICGMGGIGKTALASVVYTQMSGYFEGKCFLAGVREVAMKFGLVSLQEQLLSKIFPGEN FQLSSVYDGIETISRRLRHKKVLLVIDDADNMQHFKCLAEKRDWFGLGSRIIITSRDE HLLLRNYRVDDVYKPTTLHDFEALRLLSLKAFKSDTPKEDFMSLSQSVVKYAGGLPLA LEVLGSFLCGRGAAQWRSAIDRLKSEPDNRIHNCLKISFDGLTDSEKNIFLDIAHFFK GRDRDFVTKILDGCGYYPDIGLCVLIERSLITLENNKIRMHDLLQEMGRYIVRQKSPD EPSKRCRLSEESDVYQVLTQNSCTEAIEGMVVNSTIREQKETFTLNADAFSKMKKLRL LMIHDLLKSCDLTYLSNELRLFEWSEWPLKSLPWDFQPDNLVALLLPDSCIQQLWNRD RLLNKLKFLDLQGSRKLIRTPDFTRIENLESLNLEGCTNLVHVHPSIAFLPKLKLLNF GNCTSLKSLPTKIRMESLETFILSNCSNLRRFPEFAREMECLLELYLDGTGIKELPSS FGHLSSLKVLNLLGCSKLENLPDFTMIENLESLNLEGCISLVDVHPSISFLPKLKLLN LRNCVSLRSLSINNEMESLETLILSGCKNLKRFLEISRKMEHLLELHLDGTSMEELPS SVGNLSSLKVLNLSGCSILENSPPSFLQRIYKKGCEVLLSSLNPMLLKKGSNFMALTL PCLSSLSSLRKLNISGMNLCEGALPSDICCLSSLETLILNRNNFVSLPANLSQLTKLS RLQLMGCSKLETLPQLPSSVQGLMLDGCTSLQRVPNPTNPYNPSWVTWFYGVNCFKFA ANNNALRMLKGYLKALVNARIRVDIVIPGSEIFEWFSHQSEKCSIMIPILHNDIQWMG FALCCVIVPASNNVDWTEEKITCTVRIHFEDLRFELCTHWIGFNTQTSKDHLWLWYLP VEKLLHDEFGNLQGRDWIRSCIGIEFLFDTTGIGNKVNKCGVRLMYPSDLEDLDPTME QPSKKRKTYD" mobile_element 1711858..1711994 /note="source:CACAO_Mariner_E176_scaffold_6 169 322" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(1724013..1725931) /note="source:CACAO_M_E43465_F86_scaffold_5 1001 2919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1725932..1728890 /note="source:CACAO_M_E44313_F33_scaffold_6 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1728891..1729875 /note="source:CACAO_M_E34124_F86_scaffold_4 1936 2921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1733722..1737041 /note="source:CACAO_M_E59482_F82_scaffold_9 1 3323" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1739289..1755452) /locus_tag="TCM_027134" /note="dbxref CacaoGD:Thecc1EG027134" mRNA complement(join(1739289..1739319,1739432..1739914, 1741356..1741820,1742608..1742836,1743650..1743799, 1755400..1755452)) /locus_tag="TCM_027134" /product="Tir-nbs-lrr resistance-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027123t1" /inference="similar to AA sequence:ricco:29662.m000467" /note="quality class is medium-expresste, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.19 coverage" CDS complement(join(1739443..1739914,1741356..1741820, 1742608..1742836,1743650..1743788)) /locus_tag="TCM_027134" /note="dbxref ricco:29662.m000467; paralog of Thecc1EG027123t1" /codon_start=1 /product="Tir-nbs-lrr resistance-like protein" /protein_id="EOY25761.1" /db_xref="TAIR:AT5G17680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N1M5" /translation="MKNLSNSIEALKTNIRNLSFVHINREANSLADGLAKAGIIRSDH SSGWCLDELVEILKQKKESGHEIYPVFYDVEPRELRKQEGSVEEAFAEHEKRYNQDKT RRWRGALLEASCITGWELKDRYESEFIQDVVRVISKKLCQTYSSVRNDLIGINSHLVE LRDKICFRKYDVRIVGICGMGGIGKTTLARVVYNQMSGYFEGKCFLADVREVAMKSGL VSLQKQLLSLLLPGQDFQFFSVEGGIEIIRRRLRHKMVLFVIDDADNMQHFKCLAEKR DCHQSEECSVMIPNLQNDIQWMGFALCCALVPASNNVAWRREQISCTIKIHFEGFTCR TPTAGYYFKSKSGQISEDHLWLRYLHRDILDNILKHKSGQYEILRSGDWIRSCIGIEI LFETLGIGTKVNKCGARLVYPSDLKDLDPTMEQPSKKRKRHD" mobile_element 1740842..1740926 /note="source:scaffold_2_CACTA_0245 2320 2402" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1743018..1743053) /note="source:INTACT901F_F95_scaffold_6-int 11468 11503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1746154..1746252 /note="source:CACAO_Mariner_E176_scaffold_6 8623 8729" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(1746166..1746375) /note="source:CACAO_MITE_S123_scaffold_5 646 860" /mobile_element_type="transposon:TIR/MITE" mobile_element 1746390..1746642 /note="source:scaffold_2_CACTA_0256 18284 18585" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1747656..1748614 /note="source:CACAO_MITE_S153_scaffold_6 1 959" /mobile_element_type="transposon:TIR/MITE" mobile_element 1750686..1750871 /note="source:INTACT36_F116_scaffold_6-int 3232 3421" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1750917..1751015 /note="source:CACAO_Mariner_E176_scaffold_6 8623 8729" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(1750929..1751774) /note="source:CACAO_MITE_S123_scaffold_5 2 860" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(1752036..1752240) /note="source:scaffold_8_CACTA_0853 1809 1988" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1752846..1753136 /note="source:scaffold_2_CACTA_0256 18250 18585" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1753293..1753456 /note="source:CACAO_on_E459_scaffold_2 138 304" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 1756288..1757240 /note="source:CACAO_MITE_S153_scaffold_6 4 959" /mobile_element_type="transposon:TIR/MITE" gene complement(1757250..1771290) /locus_tag="TCM_046819" /note="dbxref CacaoGD:Thecc1EG046819" mRNA complement(join(1757250..1758107,1758262..1758796, 1759720..1760381,1760940..1761474,1762412..1763317, 1763434..1763674,1764941..1764984,1765085..1766177, 1770515..1771043,1771127..1771290)) /locus_tag="TCM_046819" /product="Disease resistance protein" /inference="alignment:exonerate- protein:2:ricco:29929.m004540.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027121t1" /inference="similar to AA sequence:Phytozome:GSVIVT01004877001" /note="quality class is strong-expertchoice, express is medium, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03370t00001" mobile_element complement(1757387..1757480) /note="source:CACAO_M_S_E144962_F231_scaffold_10 1439 1529" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(1758103..1758107,1758262..1758796, 1759720..1760381,1760940..1761474,1762412..1763317, 1763434..1763674,1764941..1764984,1765085..1766177, 1770515..1770999)) /locus_tag="TCM_046819" /note="paralog of Thecc1EG027121t1" /codon_start=1 /product="Disease resistance protein" /protein_id="EOY25762.1" /db_xref="Phytozome:GSVIVT01004877001" /db_xref="TAIR:AT5G36930.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q19PN8" /translation="MLTSSPSSSSSSSRWKYDVFLSFRGKDTRKGFTDHLYTCLQDHG IITFRDDEKLEQGESVAQKLLEAIRESWCSVIVFSETYASSSWCLKELVEILKQKDER GHKVFPVFYHIDPSDLRKQTENVKEAFAKHEDRYNQDKTQSWRDALSKAADISGWHLK DSSESKFIKGIVKEISKKLVSIRSRVPDNLIGIRSRLDELYDKIKFGKDGVRIVGICG MGGIGKTTLASVVYTKMSGYFEGKCFLAGVREVAMKFGLVSLQEKLLSKIFPGENFQF TSVYDGIEIISRRLRHKKVLVVIDDADNMQHFKCLAEERDWFGLGSRIIITSRDEQLL RAYGVHDVYKPTTLDDFEALRLLSLKAFKSDTPKDDFMSPSQIVVKYAGGLPLALEVL GSFLCGRDADQWRHAIDRLKSEPEEEIHSRLTISFDGLKETEKNIFLDIAHFFKGWDR DFVTKILDGCGYRAGIGLPVLIERSLITVEDNKIWMHDLLQEMGRNIVRQKSPNEPGK RCRLSEESDVHQVLTQNSGTEAIEGMVINSTIWEQKETFTLNADAFSKMKKLRLLMVH DLLKSCDLTYLSNELRLLEWSGWPLKSLPWDFQPDNLVTLLLPDSCIQQLWNGDRLLN KLKFLDLQGSRKLIRTPDFTRIKNLESLNLEGCTNLVHVHPSIAFLPKLKLLNLSNCV SLRSLSINNEMESLETLILSGCKNLKRISEITGKMKHLRDLHLDGTSVEELPSSVGNL SSLKVLNLSGCSVLENSPPSFLQRIYKKGCEVLLSSLNPMLLKKGSNFMALTLPCLSS LSSLRELNISGMNLCEGALPSDICCLSSLETLILNCNNFVSLPANLSQLTKLYCLQLM GCSKLETLPQLPSSVQGLMLDGCTSLQRVPNLTNPHNPSWVTWFYGVNCFKLAANNNA LRMLKGYLKTFANAGIRVDIVIPGSEIFEWFNHQSEKCSIMIPILQNDVQWMGFALCC VVVPASNNVDWTEEDITCRVTIHFEDLTFKSCTHGIGFNTQTSKDHLCLWYLPVEYLL HDQFGNLQSRDWIQSCMGIEFLFDTAGIGNKVNKCGARLVYPSDLEDLDPIVEQPSKK RKRYNKDTIDGSTGCKNLKRISEITGKMKHLRGLHLDGTSMEELPSSVGNLSSLKVLN LSGCSVLENSPPSFLQRIYKKGCEVLLSSLNPMLLKKGSNFMALTLPCLSSLSSLREL NISGMNLCEGDLPSDICCLSSLEELILSHNNFVSLPANLSQLTKLYCLQLMGCSKLET LPQLPSSVQGLMLDGCTSLQRVPNPTNPHNPSWVTWFYGVNCFKFAANNNALRMLKGY LKTYANARIRLDIVIPGSEIFEWFSHQSEKCSIMIPILQNDIQWIGVALCCVLVPASN NVDWTEEEIPCITRIHFEDLTVESRTDTIAFNTQTSKDHLWLWYLPVEYLLHDQFGNL QSRDWIQSCMGIEFLFDTSGIGNKVNKCGARLVYPSDLEDLDPIVEQPSKKRKRNNKD TIDGSTG" mobile_element 1758957..1759081 /note="source:scaffold_2_CACTA_0245 461 576" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1763842..1763978 /note="source:CACAO_Mariner_E176_scaffold_6 169 322" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(1766298..1766408) /note="source:scaffold_5_CACTA_0584 1926 2034" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1766409..1766440) /note="source:CACAO_M_S_E14849_F156_scaffold_2 693 755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1770428..1770497 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3898 3968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1770923..1770960) /note="source:INTACT901F_F95_scaffold_6-int 11468 11505" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1772487..1786415) /locus_tag="TCM_046820" /note="dbxref CacaoGD:Thecc1EG046820" mRNA complement(join(1772487..1773059,1773375..1773513, 1773598..1773675,1774299..1774467,1775116..1775232, 1775342..1775488,1775599..1775775,1775862..1776110, 1777678..1777917,1778002..1778164,1778267..1778388, 1778478..1778570,1779194..1779334,1779478..1779561, 1779722..1779832,1780599..1780697,1780803..1780904, 1780981..1781065,1781976..1782058,1782135..1782185, 1782268..1782391,1782485..1782642,1782794..1782908, 1783487..1783616,1783944..1784109,1784464..1784674, 1785176..1785345,1785635..1785734,1786148..1786415)) /locus_tag="TCM_046820" /product="Cullin-associated and neddylation dissociated" /inference="alignment:exonerate- protein:2:ricco:29609.m000578" /inference="similar to AA sequence:ricco:29609.m000578" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc191t8" CDS complement(join(1772963..1773059,1773375..1773513, 1773598..1773675,1774299..1774467,1775116..1775232, 1775342..1775488,1775599..1775775,1775862..1776110, 1777678..1777917,1778002..1778164,1778267..1778388, 1778478..1778570,1779194..1779334,1779478..1779561, 1779722..1779832,1780599..1780697,1780803..1780904, 1780981..1781065,1781976..1782058,1782135..1782185, 1782268..1782391,1782485..1782642,1782794..1782908, 1783487..1783616,1783944..1784109,1784464..1784674, 1785176..1785345,1785635..1785670)) /locus_tag="TCM_046820" /note="dbxref ricco:29609.m000578" /codon_start=1 /product="Cullin-associated and neddylation dissociated" /protein_id="EOY25763.1" /db_xref="TAIR:AT2G02560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L5Y6" /translation="MANLQMTGILEKMTGKDKDYRYMATSDLLNELNKEGFKADSDLE IKLSNIILQQLDDVAGDVSGLAVKCLAPLVKKVGEPRVVEMTNKLCDNLLNGKDQHRD IASIALKTIIAEITTPSLAQSILISLSPQLIRGITGPGTSTEIKCECLDILCDVLHKF GNLMAADHEMLLNALLSQLSSNQASVRKKTVSCIASLSSSLSDELLAKTTIEVVRNLG SKGTKSELIRTNIQMIGALSRAVGYRFGPHLEDTVPVLINYCTTASENDEELREYSLQ ALESFLLRCPRDISSYCDEILHLALEYLSYDPNFTDNMEEDTDDENHEEEEDDESANE YTDDEDVSWKVRRAAAKCLAALIVSRPEMLCKLYEEACPKLIDRFKEREENVKMDVFN TFIELLRQTGNVTKGQTDMNELSPRWLLKQEVPKIVKSINRQLREKSIKTKVGAFSVL KELVVVLPDCLADHIGTLIPGIEKALNDKSSTSNLKIEALIFTRLVLASHSPSVFHPY IKDLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPNLEVLDFDFKPYVHPIYNAIMS RLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAF AVIAASQLWVDLSCVLEHVIAELTGFLRKANRALRQATLGTLNSLIVAYGDKIGPSAY EVIIVELSTLISDSDLHMTALALELCCTLMADKRSCRNVGSAVRNRVLPQALTLIKSS LLQGQALLALQNFFAALVYSANTSFDALLESLLSSAKPSPQSGGVAKQALYSIAQCVA VLCLAAGDQKCSSTVKMLTDILKDDSTTNSAKQHLALLCLGEIGRRKDLSSHAHIETI IIESFQSPFEEIKSAASYALGNIAVGNLSKYLPFILDQIDNQQKKQYLLLHSLKEVIV RQSVDKAEFQDSSVEKILKLLFNHCESEEEGVRNVVAECLGKIALIEPVKLIPALKVR TTSPAAFTRATVVIAVKYSIVERPEKIDEIIYPEIASFLMLIKDQDRHVRRAAVLALS TFAHNKPNLIKGLLPELLPLLYDQTIVKQELIRTVDLGPFKHIVDDGLELRKAAFECV DTLLDSCLDQVNPSSFIVPYLKSGLDDHYDVKMPCHLILSKLADKCPSAVLAVLDSLV DPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNRISGGDCSLKFKNLMSEISK SPTLWDKYYSIRNE" mobile_element complement(1791127..1792069) /note="source:CACAO_M_E49279_F74_scaffold_6 1003 1935" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1792312..1802270 /locus_tag="TCM_027137" /note="dbxref CacaoGD:Thecc1EG027137" mRNA join(1792312..1792562,1793146..1793245,1794939..1795050, 1796292..1796688,1799708..1799783,1799890..1799936, 1800059..1800255,1800653..1801478,1802247..1802270) /locus_tag="TCM_027137" /product="Zinc ion binding, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s02420.1" /inference="similar to AA sequence:Phytozome:GSVIVT01015997001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b026234t1a2; alternateUTRof:Thecc1EG027137t1; inference alignment:Newbler:10:TSA:cgbaL_g14021t00001" mRNA join(1792312..1792562,1793146..1793245,1794939..1795050, 1796292..1796688,1799708..1799783,1799890..1799936, 1800059..1800390,1800653..1801183) /locus_tag="TCM_027137" /product="Zinc ion binding, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s02420.1" /inference="similar to AA sequence:Phytozome:GSVIVT01015997001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01389t00001; alternateUTRof:Thecc1EG027137t1; inference alignment:Newbler:10:TSA:cgbaL_g14021t00001" mRNA join(1792465..1792562,1793146..1793245,1794939..1795050, 1796292..1796688,1799708..1799783,1799890..1799936, 1800059..1800255,1800653..1800692,1800924..1801478, 1802247..1802270) /locus_tag="TCM_027137" /product="Zinc ion binding, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s02420.1" /inference="similar to AA sequence:Phytozome:GSVIVT01015997001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14021t00001" CDS join(1792474..1792562,1793146..1793245,1794939..1795050, 1796292..1796688,1799708..1799783,1799890..1799936, 1800059..1800236) /locus_tag="TCM_027137" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Zinc ion binding, putative isoform 1" /protein_id="EOY25764.1" /db_xref="Phytozome:GSVIVT01015997001" /db_xref="TAIR:AT3G02860.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T3W4" /translation="MDVQARNKALFRAKLNAQKKDKRIDSPLVRYNELDQPVCRICDV VLKSESHWDAHQASRKHHEAINNLKANAAKRTQASNTQSGLPLGFFDNNGTGKQKTET VKLPDSNSNKKLGISAQTHAMESLYSEKEKDDPPQSSVTQTKKIQPPESRQVTGLETK QVRGSLPDDFFDKDEANLPVNGMKPARDNKQKSMQATALETKQAKGALPEGFFDNKEA DLRARGIKPVKIDVKDEYKEFEKLIQEDLQGVDDRMEEEEIDAAEMIEEAESLEQKVY KEKVEMLRKRKLELQATRLNKRGRTKADSKESKSEESSSDDDSDENFAVDWRAQHL" CDS join(1792474..1792562,1793146..1793245,1794939..1795050, 1796292..1796688,1799708..1799783,1799890..1799936, 1800059..1800236) /locus_tag="TCM_027137" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Zinc ion binding, putative isoform 1" /protein_id="EOY25765.1" /db_xref="Phytozome:GSVIVT01015997001" /db_xref="TAIR:AT3G02860.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T3W4" /translation="MDVQARNKALFRAKLNAQKKDKRIDSPLVRYNELDQPVCRICDV VLKSESHWDAHQASRKHHEAINNLKANAAKRTQASNTQSGLPLGFFDNNGTGKQKTET VKLPDSNSNKKLGISAQTHAMESLYSEKEKDDPPQSSVTQTKKIQPPESRQVTGLETK QVRGSLPDDFFDKDEANLPVNGMKPARDNKQKSMQATALETKQAKGALPEGFFDNKEA DLRARGIKPVKIDVKDEYKEFEKLIQEDLQGVDDRMEEEEIDAAEMIEEAESLEQKVY KEKVEMLRKRKLELQATRLNKRGRTKADSKESKSEESSSDDDSDENFAVDWRAQHL" CDS join(1792474..1792562,1793146..1793245,1794939..1795050, 1796292..1796688,1799708..1799783,1799890..1799936, 1800059..1800236) /locus_tag="TCM_027137" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Zinc ion binding, putative isoform 1" /protein_id="EOY25766.1" /db_xref="Phytozome:GSVIVT01015997001" /db_xref="TAIR:AT3G02860.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T3W4" /translation="MDVQARNKALFRAKLNAQKKDKRIDSPLVRYNELDQPVCRICDV VLKSESHWDAHQASRKHHEAINNLKANAAKRTQASNTQSGLPLGFFDNNGTGKQKTET VKLPDSNSNKKLGISAQTHAMESLYSEKEKDDPPQSSVTQTKKIQPPESRQVTGLETK QVRGSLPDDFFDKDEANLPVNGMKPARDNKQKSMQATALETKQAKGALPEGFFDNKEA DLRARGIKPVKIDVKDEYKEFEKLIQEDLQGVDDRMEEEEIDAAEMIEEAESLEQKVY KEKVEMLRKRKLELQATRLNKRGRTKADSKESKSEESSSDDDSDENFAVDWRAQHL" gene 1808143..1819660 /locus_tag="TCM_027138" /note="dbxref CacaoGD:Thecc1EG027138" mRNA join(1808143..1808670,1808779..1809036,1810908..1811132, 1811343..1811381,1811486..1811549,1812282..1812621, 1814308..1814603,1815488..1815568,1816146..1816244, 1816659..1816880,1817059..1817247,1817329..1817404, 1817502..1817796,1818038..1818159,1819024..1819533) /locus_tag="TCM_027138" /product="STELAR K+ outward rectifier isoform 1" /inference="alignment:exonerate-protein:2:frave:gene30492" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013007t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s02430.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1094t1" mRNA join(1808367..1808670,1808779..1809036,1810908..1811132, 1811486..1811549,1812282..1812621,1814308..1814603, 1815488..1815568,1816146..1816244,1816659..1816880, 1817059..1817247,1817329..1817404,1817502..1817796, 1818038..1818159,1819024..1819660) /locus_tag="TCM_027138" /product="STELAR K+ outward rectifier isoform 2" /inference="alignment:exonerate-protein:2:frave:gene30492" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013007t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s02430.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1094t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1094t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1926t6" CDS join(1808807..1809036,1810908..1811132,1811343..1811381, 1811486..1811549,1812282..1812621,1814308..1814603, 1815488..1815568,1816146..1816244,1816659..1816880, 1817059..1817247,1817329..1817404,1817502..1817796, 1818038..1818159,1819024..1819265) /locus_tag="TCM_027138" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG013007t1" /codon_start=1 /product="STELAR K+ outward rectifier isoform 1" /protein_id="EOY25767.1" /db_xref="Phytozome:POPTR_0017s02430.1" /db_xref="TAIR:AT3G02850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8S6" /translation="MREINGIRDESPANGEEYDYEVEELRDRIQSSRGSRFDLIANEF GLAPARGRRKFSRRTVIDGIKDLRGLAIHPDNRWYRAWTKFILIWALYSSFFTPMEFG FFRGLPENLFILDIAGQVAFLLDIVLQFFLAYRDSQTYRMIYKRTSIAIRTNVVDFLL NLYLKYLKSSFVIDLLGCMPWDIIYKASGRKEEVRYLLWIRLYRVRKVTEFFQNIEKD IRINYLFTRIIKLIFVELYCTHTAACIFYFLATTLPPEEEGYTWIGSLKLGDYSFSHF REIDLWKRYTTSMYFAIVTMATVGYGDIHAVNMREMIFIMIYVSFDMILGAYLIGNMT ALIVKGSKTEKFRDKMTDVIKYMNRNRLDRDIRNQIKGHLRLQYESSYTEGAVLQDIP ISIRAKISQSLYMPYIVNVSLFKGCSAEFINQIVIRLHEEFFLPGEVIMEQGNVVDQL YFVCHGVLEEVAIGEDGSEETVSLLQPNSSFGEISILCNIPQPYTVRVCDLCRLLRLD KQSFSNILEIYFYDGRRILNNLLEGKESNLRVKQLESDISFHIGKQEAELALRVNCAA YHGDLHQLKSLIRAGADPDKTDYDGRSPLHLAASKGHDDITKYLIQHGVDINLKDKFG NAPLLEAIKNGHDHVAAMLVREGAYLNIDDAGSFLCAAVVKGDSDFIKRVLSNGIDLN SRDYDHRTALHVAASEGLYLMAKLLIEAGASVFTKDRWGNTPLDEGRMCGNKHLIKLL EDAKSTQLTEFPYCSREITDKMHPKKCTVFPFHPQEAKEQRRHGIVLWIPHTIEDLVK TAAEQLEFPDGSCVLSEDAGKILDVDMINDGEKLYLISETH" CDS join(1808807..1809036,1810908..1811132,1811486..1811549, 1812282..1812621,1814308..1814603,1815488..1815568, 1816146..1816244,1816659..1816880,1817059..1817247, 1817329..1817404,1817502..1817796,1818038..1818159, 1819024..1819265) /locus_tag="TCM_027138" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG013007t1" /codon_start=1 /product="STELAR K+ outward rectifier isoform 2" /protein_id="EOY25768.1" /db_xref="Phytozome:POPTR_0017s02430.1" /db_xref="TAIR:AT3G02850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8S6" /translation="MREINGIRDESPANGEEYDYEVEELRDRIQSSRGSRFDLIANEF GLAPARGRRKFSRRTVIDGIKDLRGLAIHPDNRWYRAWTKFILIWALYSSFFTPMEFG FFRGLPENLFILDIAGQVAFLLDIVLQFFLAYRDSQTYRMIYKRTSIAIRYLKSSFVI DLLGCMPWDIIYKASGRKEEVRYLLWIRLYRVRKVTEFFQNIEKDIRINYLFTRIIKL IFVELYCTHTAACIFYFLATTLPPEEEGYTWIGSLKLGDYSFSHFREIDLWKRYTTSM YFAIVTMATVGYGDIHAVNMREMIFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFR DKMTDVIKYMNRNRLDRDIRNQIKGHLRLQYESSYTEGAVLQDIPISIRAKISQSLYM PYIVNVSLFKGCSAEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVAI GEDGSEETVSLLQPNSSFGEISILCNIPQPYTVRVCDLCRLLRLDKQSFSNILEIYFY DGRRILNNLLEGKESNLRVKQLESDISFHIGKQEAELALRVNCAAYHGDLHQLKSLIR AGADPDKTDYDGRSPLHLAASKGHDDITKYLIQHGVDINLKDKFGNAPLLEAIKNGHD HVAAMLVREGAYLNIDDAGSFLCAAVVKGDSDFIKRVLSNGIDLNSRDYDHRTALHVA ASEGLYLMAKLLIEAGASVFTKDRWGNTPLDEGRMCGNKHLIKLLEDAKSTQLTEFPY CSREITDKMHPKKCTVFPFHPQEAKEQRRHGIVLWIPHTIEDLVKTAAEQLEFPDGSC VLSEDAGKILDVDMINDGEKLYLISETH" mobile_element complement(1810283..1810325) /note="source:CACAO_M_E57022_F247_scaffold_8 2624 2669" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1819729..1820722) /locus_tag="TCM_027139" /note="dbxref CacaoGD:Thecc1EG027139" mRNA complement(1819729..1820722) /locus_tag="TCM_027139" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage" CDS complement(1820221..1820421) /locus_tag="TCM_027139" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25769.1" /translation="MNLTRAISLFSSLPLIGFLMNKTLALLLGCYESAPNVSDDDKHD AATSSNAAAQQHFRQLQHIRAA" mobile_element 1820593..1820747 /note="source:scaffold_4_CACTA_0506 2686 2859" /mobile_element_type="transposon:TIR/CACTA" gene complement(1822212..1827130) /locus_tag="TCM_027140" /note="dbxref CacaoGD:Thecc1EG027140" mRNA complement(join(1822212..1822573,1822891..1823019, 1823419..1823595,1825018..1825093,1825197..1825279, 1825809..1825910,1826577..1826645,1826963..1827128)) /locus_tag="TCM_027140" /product="Nucleic acid binding,RNA binding isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s23810.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s23810.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00737t00001; inference alignment:Newbler:10:TSA:cgbaL_g02388t00002" mRNA complement(join(1822259..1822573,1822891..1823019, 1823419..1823595,1824843..1824890,1825018..1825093, 1825197..1825279,1825809..1825910,1826025..1826077, 1826232..1826289,1826370..1826462,1826577..1826645, 1826963..1827130)) /locus_tag="TCM_027140" /product="Nucleic acid binding,RNA binding isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s23810.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02388t00002" CDS complement(join(1822409..1822573,1822891..1823019, 1823419..1823595,1825018..1825093,1825197..1825279, 1825809..1825910,1826577..1826645,1826963..1827037)) /locus_tag="TCM_027140" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Nucleic acid binding,RNA binding isoform 2" /protein_id="EOY25771.1" /db_xref="Phytozome:POPTR_0004s23810.1" /db_xref="TAIR:AT2G02570.4" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IR82" /translation="MQGEDELSIEELASNLSTYKEQLQQVRQILVDDPGNLEYVDMEK ELAEVIALTEELLATAKQNEISGSDIGTSYSAPPAQSKEAGKTSDYGDKFPVGTKVQA VWSEDGEWYDATVEAITPNGYFVLYDGWGNKEEVDPANVRAIEYNALLEAEKVAEATK QAIKRKIAQAASVDFQSRSLPAKLRITADDPEDVKAAKRKKIHAFKSKMRFEQLEVAQ NKRQNAWQQFQTTKGKTKKVGFFSGRKRESIFKSPDDPHGKVGVTGSGKGLTEFQKRE KHLHLKGGNVEINDD" CDS complement(join(1822409..1822573,1822891..1823019, 1823419..1823595,1824843..1824890,1825018..1825093, 1825197..1825279,1825809..1825910,1826025..1826077, 1826232..1826289,1826370..1826462,1826577..1826645, 1826963..1827037)) /locus_tag="TCM_027140" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Nucleic acid binding,RNA binding isoform 1" /protein_id="EOY25770.1" /translation="MQGEDELSIEELASNLSTYKEQLQQVRQILVDDPGNLEYVDMEK ELAELVMLRLQFGFSVEKWNQPTIQHQKVIEISVLESTCCSNKQHQLTATGSAGGVLC VVMASLLLIHLISDVIALTEELLATAKQNEISGSDIGTSYSAPPAQSKEAGKTSDYGD KFPVGTKVQAVWSEDGEWYDATVEAITPNGYFVLYDGWGNKEEVLRCSARQQKRLRPF RVDPANVRAIEYNALLEAEKVAEATKQAIKRKIAQAASVDFQSRSLPAKLRITADDPE DVKAAKRKKIHAFKSKMRFEQLEVAQNKRQNAWQQFQTTKGKTKKVGFFSGRKRESIF KSPDDPHGKVGVTGSGKGLTEFQKREKHLHLKGGNVEINDD" mobile_element complement(1828068..1828196) /note="source:scaffold_7_CACTA_0795 2860 2996" /mobile_element_type="transposon:TIR/CACTA" gene 1828541..1836705 /locus_tag="TCM_027141" /note="dbxref CacaoGD:Thecc1EG027141" mRNA join(1828541..1829010,1829547..1829645,1829768..1829881, 1831225..1831296,1831378..1831488,1831569..1831688, 1833329..1833430,1833541..1833613,1833759..1833842, 1833942..1834006,1834193..1834294,1834393..1834575, 1835663..1836678) /locus_tag="TCM_027141" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29806.m000980" /inference="similar to AA sequence:ricco:29806.m000980" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g520t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g520t4" mRNA join(1828593..1829010,1829547..1829645,1829768..1829881, 1831225..1831296,1831378..1831482,1831569..1831688, 1833329..1833430,1833541..1833613,1833759..1833842, 1833942..1834006,1834193..1834294,1834393..1834575, 1835156..1835229,1835663..1836705) /locus_tag="TCM_027141" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29806.m000980" /inference="similar to AA sequence:ricco:29806.m000980" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g520t4" CDS join(1828645..1829010,1829547..1829645,1829768..1829881, 1831225..1831296,1831378..1831482,1831569..1831688, 1833329..1833430,1833541..1833613,1833759..1833842, 1833942..1834006,1834193..1834294,1834393..1834575, 1835156..1835229,1835663..1835774) /locus_tag="TCM_027141" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29806.m000980" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25772.1" /db_xref="TAIR:AT5G49820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AUK4" /translation="MKVKVKQSPPNPNATAQSLTSQESRLLVRETLRISANLATNAGV TSSSGSSMNDGAAIPLMDENRRMGLVGEEFVESSLKLICCEEIDGRRWKYMAEKDPFG NLKNNSIRALSSHTPQAPVDELMSFVRSYVVPEGFPDSVTPSYVPYMTWRALKHFFGG AMGVFTTQTLLSSVGVSRNRATPGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQL RFAGDLLMELGAGVELATAAVPHLFLPMACAANVNVAAVTSTSTRTPIYKAFAKGENI GDVTAKGECVGNIADLLGTGLSIMISKRNPSLITTFALLSCGYVFSSYQEVRSVVLHT LNRARFSVAVDSFLKTGQVPSLQEGNLQENIFSFPWLKDRPVVLGSRFKDAFQDPSPY LAIEPLFEKERYLVTYNPSKGKVYALLKDQAKSDDIIKAAFHAHVLLHFIHSSNNGQY SSRSQQEHDHSNLMPSTTDFAAHIADSCKMVSTSYGIFKSKAAEQRVIEKCCGTFALC SLKKGFVNDNTGVGGCQSHFLILVELDCINELNGRTGLSSSAYPKLDV" CDS join(1828645..1829010,1829547..1829645,1829768..1829881, 1831225..1831296,1831378..1831488,1831569..1831688, 1833329..1833430,1833541..1833613,1833759..1833842, 1833942..1834006,1834193..1834294,1834393..1834575, 1835663..1835716) /locus_tag="TCM_027141" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29806.m000980" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY25773.1" /db_xref="TAIR:AT5G49820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AUK4" /translation="MKVKVKQSPPNPNATAQSLTSQESRLLVRETLRISANLATNAGV TSSSGSSMNDGAAIPLMDENRRMGLVGEEFVESSLKLICCEEIDGRRWKYMAEKDPFG NLKNNSIRALSSHTPQAPVDELMSFVRSYVVPEGFPDSVTPSYVPYMTWRALKHFFGG AMGVFTTQTLLSSVGVSRNRATPGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQL RFAGDLLMELGAGVELATAAVPHLFLPMACAANVVKNVAAVTSTSTRTPIYKAFAKGE NIGDVTAKGECVGNIADLLGTGLSIMISKRNPSLITTFALLSCGYVFSSYQEVRSVVL HTLNRARFSVAVDSFLKTGQVPSLQEGNLQENIFSFPWLKDRPVVLGSRFKDAFQDPS PYLAIEPLFEKERYLVTYNPSKGKVYALLKDQAKSDDIIKAAFHAHVLLHFIHSSNNG QYSSRSQQEHDHSNLMPSTTDFAAHIADSCKMVSTSYGIFKSKAAEQGWRMSESLLNP GRARLY" gene complement(1837590..1844057) /locus_tag="TCM_027142" /note="dbxref CacaoGD:Thecc1EG027142" mRNA complement(join(1837590..1839647,1840295..1840650, 1843704..1844057)) /locus_tag="TCM_027142" /product="Homeobox protein 31" /inference="alignment:exonerate- protein:2:ricco:29806.m000981" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001660t1" /inference="similar to AA sequence:ricco:29806.m000981" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03234t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc654t2" CDS complement(1838413..1839291) /locus_tag="TCM_027142" /note="dbxref ricco:29806.m000981; paralog of Thecc1EG001660t1" /codon_start=1 /product="Homeobox protein 31" /protein_id="EOY25774.1" /db_xref="TAIR:AT1G14440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N779" /translation="MELSSQEGEMPIPLNSTYGGGHMIHHDHHAAPHNHIIVSSAPQI TCTGPSIPTNLDDDHHVGFKKVVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGSIEA LTCSACNCHRNFHRKEIEGEPSPSSCDCYPSHSPHLSRAGRKLFLGHHKSILPPEALG LGYPTATGTLIHSRAAPTPTPHQMIMSYNMGSLPSESDDQADGGGVVTRPHQLVKKRF RTKFTQEQKEKMLNFADKVGWKIQKQEEAVVQQFCQEIGVKRRVLKVWMHNNKHNLAK KNPSSTTTPTTTTPAT" mobile_element 1842742..1842814 /note="source:INTACT1373F_F385_scaffold_8-int 6929 6998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1844224..1844316) /note="source:scaffold_3_CACTA_0396 893 985" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1844227..1844356 /note="source:scaffold_9_CACTA_0936 328 450" /mobile_element_type="transposon:TIR/CACTA" gene 1845070..1846252 /locus_tag="TCM_027143" /note="dbxref CacaoGD:Thecc1EG027143" mRNA 1845070..1846252 /locus_tag="TCM_027143" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS 1845563..1846231 /locus_tag="TCM_027143" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25775.1" /translation="MTRPDISYAVNLRMYAPTAPPLPEAKTILRYLKSRLGCVELRLS LAPYLNLVHTLMGIGAGCSNPTTIYDRLLCLSWLFYIISWGSKKQSMFSRSSAISLFL KCYGFQIFSEVLDFQISINSHDLLLMIFQGRTKNILKLIFSLFKTLLPMALLLLNLFP LQNQLADILTRGLLPIISFSFCLQTSLRTLHHQFAGVIADYMQSVPSVCRVRFYLGIR RYTI" gene complement(1846960..1858667) /locus_tag="TCM_027144" /note="dbxref CacaoGD:Thecc1EG027144" mRNA complement(join(1846960..1847266,1849485..1850284, 1851014..1851170,1851988..1852080,1852216..1852584, 1853726..1853800,1855466..1855589,1855679..1855821, 1856042..1856146,1856233..1856277,1856906..1857031, 1857146..1857280,1857471..1857746,1857834..1858238, 1858331..1858667)) /locus_tag="TCM_027144" /product="Squamous cell carcinoma antigen recognized by T-cells 3" /inference="alignment:exonerate- protein:2:ricco:29609.m000574" /inference="similar to AA sequence:ricco:29609.m000574" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g676t2" CDS complement(join(1850025..1850284,1851014..1851170, 1851988..1852080,1852216..1852584,1853726..1853800, 1855466..1855589,1855679..1855821,1856042..1856146, 1856233..1856277,1856906..1857031,1857146..1857280, 1857471..1857746,1857834..1858238,1858331..1858546)) /locus_tag="TCM_027144" /note="dbxref ricco:29609.m000574" /codon_start=1 /product="Squamous cell carcinoma antigen recognized by T-cells 3" /protein_id="EOY25776.1" /db_xref="TAIR:AT4G24270.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JQ75" /translation="MEKVEKSPISTEEEEDTEMGEGDVVENPKASSKSSSDSESSDSE DEAEQNEQLQTLESELSTNPSNYDAHVQYIKLLRKRGEIEKLREARENMNALFPLSPS MWMEWAKDEASLSDDSGFEAVEKLYERGISEYLSVSLWCEYLNYAQEHDPEVRQCSAD GISKARNLFERAVTAAALHVAQGFRIWDAYTQFEQAILLTIDHSDIQAKEKQVQCIRS IFHRHLSIPLANLRATLLAYKAWEVEQGNALDAESDTVDGISSHVASAYQKAEEMYNA RAHHEEQITRQDISESERFQHFVSYLEYEQSFGDPARVQILYERAITDFPVSSDLWLD YMRYLDKTLKAGNVVKDVYSRATRNCPWVGELWVRYLLCLERGHGSEKEISSVFEKSL QCTFSTLEEYLDLFLTRVDGLRRRISSARGDDVLNYSLIRESFQQAADYLSPHMKNAD GLLRLHAYWARLELKLGNDLVAARGVWESLLKTCGSMLEAWQGYISMEIELGHINEVR AIYKRCYSKRVSGTGSEDLCHAWLRFEREFGTLEDLDHALQKVTPRLKELQLFRLQQE SKSVIEATDKREKTSQKTAREKRKSGSSAIDEQSPAKRQKNTSQYQKKLHEKENTQGK NVAEANDGEGKKGKVDKPVNEQQMKDTGPGKTRLYTDQCTAFISNLDYKANYEDLRQF FSDVGGITSMRILHDRFTGKSRGLAYVDFVDDEHLAAAVMKNKQMLLGKKLSIARSNP KQRERESFVLNAPGGHEDASNRSGIDGSSASKESVESPKGSRVPQSTASKRVENFQLK GKNTFAVPRNVRPLGWTSNKPETREEGDEKPKSNDEFRKMFMKT" mobile_element 1858708..1858850 /note="source:CACAO_on_E506_scaffold_4 153 290" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(1858721..1858834) /note="source:CACAO_on_E445_scaffold_2 445 554" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 1859008..1859024 /note="source:CACAO_on_E175_scaffold_1 601 747" /mobile_element_type="transposon:TIR/hAT" mobile_element 1859025..1859157 /note="source:scaffold_1_CACTA_0009 2377 2511" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1859215..1859671) /note="source:CACAO_on_S_E390_scaffold_9 2394 2860" /mobile_element_type="transposon:TIR/Mutator" gene 1859745..1860208 /locus_tag="TCM_027145" /note="dbxref CacaoGD:Thecc1EG027145" mRNA 1859745..1860208 /locus_tag="TCM_027145" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.64 coverage" CDS 1859867..1860079 /locus_tag="TCM_027145" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25777.1" /translation="MSSTSSFKFNFSETLQLKGIHLTSFKLLLAGASVILIATIIYFR CIRGRPRNNAEVDLDIDAGIELRTMN" mobile_element 1860251..1860373 /note="source:CACAO_M_S_E14849_F156_scaffold_2 679 788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1860266..1860387 /note="source:scaffold_5_CACTA_0584 1925 2040" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1860452..1860513 /note="source:CACAO_M_E58230_F143_scaffold_9 1668 1729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1860462..1860519) /note="source:CACAO_M_E57564_F369_scaffold_9 1387 1444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1860844..1860918 /note="source:INTACT146F_F14_scaffold_2-int 13442 13517" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1860860..1860919) /note="source:scaffold_9_CACTA_0929 10097 10156" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1863096..1863195 /note="source:scaffold_5_CACTA_0615 998 1092" /mobile_element_type="transposon:TIR/CACTA" gene complement(1864201..1865013) /locus_tag="TCM_027146" /note="dbxref CacaoGD:Thecc1EG027146" mRNA complement(join(1864201..1864847,1864929..1865013)) /locus_tag="TCM_027146" /product="HSP20-like chaperones superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29869.m001176" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036433t1" /inference="similar to AA sequence:ricco:29869.m001176" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc251t1" CDS complement(1864321..1864839) /locus_tag="TCM_027146" /note="dbxref ricco:29869.m001176; paralog of Thecc1EG036433t1" /codon_start=1 /product="HSP20-like chaperones superfamily protein" /protein_id="EOY25778.1" /db_xref="TAIR:AT4G10250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJZ4" /translation="MATQGNALVPYTRSLWDMMLPAEDPFRILEHTPLTVPKGVETTL ALARADWKETPQAHVISLDIPGMKKDDVKIEVEENRVVRVSGERKDEEQAEGDKWHRA ERINGKFWRQFRLPGNADLDHIKAHLEDGVLRIVVPKFAEEIKRQPKVIDIVGEEGPS GQDVEATKATQK" gene complement(1865652..1876200) /locus_tag="TCM_027147" /note="dbxref CacaoGD:Thecc1EG027147" mRNA complement(join(1865652..1866538,1866785..1867747, 1868361..1868540,1868703..1869020,1870665..1870799, 1872728..1872964,1873060..1873248,1873320..1873508, 1873933..1874028,1874131..1874337,1874468..1874661, 1875712..1876200)) /locus_tag="TCM_027147" /product="Methionine S-methyltransferase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023133001" /inference="similar to AA sequence:Phytozome:POPTR_0004s23890.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc291t11" CDS complement(join(1866212..1866538,1866785..1867747, 1868361..1868540,1868703..1869020,1870665..1870799, 1872728..1872964,1873060..1873248,1873320..1873508, 1873933..1874028,1874131..1874337,1874468..1874661, 1875712..1875934)) /locus_tag="TCM_027147" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Methionine S-methyltransferase, putative isoform 1" /protein_id="EOY25779.1" /db_xref="Phytozome:POPTR_0004s23890.1" /db_xref="TAIR:AT5G49810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SIP8" /translation="MKMVQVDEFLKQCQQSGDAAYTAFRSLLERLEDPKTRCEARMFL SDLQSRVGSSDDCLQQYHFRIQDIYLDQYQGSQGRKKLTMMVIPSIFIPEDWSFTFYE GLNRHPDSIFKDKTVAELGCGNGWITIAIADKWLPAKVYGLDINPRAVKVSWINLYMN AFDEKGQPIYDEEKKTLLDRVEFHESDLLAYCREHDIQLERIVGCIPQILNPNPEAMS KMITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIAVIKPTGIMIFNMGGR PGQGVCKRLFERRGFLVNRLWQTKVLQAGDTDISALVEIEKNSPHRFEFFMGLTGDQP ICARTAWAYGKAGGRISHALSVYSCQLRQPNQVKVIFEFLKSGFQEISSSLDLSFEDD SVADEKIPFLAYLARVLKENSYFPYEPPAGCNSFCNLIAAFLKTYHHIPLTSDNVVVF PSRTVAIENALRLFSPRLAIVDEHLTRNLPRQWLTSLAIETAENGLSEDALTVIEAPR QSDLMIELIKKLKPQVVVTGIAHFEAVTSSAFVQLLDATREIGSRLLLDISDHFELSS LPGSSGVLKYLSGTPLPSHAAILCGLVKNQVYSDLEVAFVISEEEAILKALSKTVEVL EGNTSLISQYYYGCLFHELLAFQLTDRHPHPERRTEKSKSVEMIGFATSAISVLNNSE LSISDDRNSLIHMDVDQWFLPMPSVVKAAIFESFARQKMAESEIDVTPSIKQFVNSNY GFSTDSSTEFIYSDCSQALFKNLVLCCILEGGTMCFPAGSNGNYVSVAKFLKANIVKI PANSEEGFKLTEEILNKALETVNKPWVYISGPTINPTGLLYSNKEMENILTACARFGA RVVIDTSFSGLEFDFQGWGGWNLEGCLSKLSSSGNPSFCVSLLGGLSLKLLSGALKFG FLALNQPRLIDAFHSFPGLSKPHSTDKYAIKKLLALREQKGGMLDVDTEHIRHLENRA KRLKEELEKCGWDVLRPQAGVSMVAKPLFLNKAVKLSHSLKDTGSSEKDASTYEVQLD NSTIREAIVKTTGLCINSGLWTGIPGYCRFTFALEDSEFEQALACLVKFKSIVGN" mRNA complement(join(<1867046..1867717,1868361..1868540, 1868703..1869020,1870665..1870799,1872728..1872964, 1873060..1873248,1873320..1873508,1873933..1874028, 1874131..1874337,1874468..1874661,1875712..>1875984)) /locus_tag="TCM_027147" /product="Methionine S-methyltransferase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023133001" /inference="similar to AA sequence:Phytozome:POPTR_0004s23890.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc741t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc291t11" CDS complement(join(<1867046..1867717,1868361..1868540, 1868703..1869020,1870665..1870799,1872728..1872964, 1873060..1873248,1873320..1873508,1873933..1874028, 1874131..1874337,1874468..1874661,1875712..>1875982)) /locus_tag="TCM_027147" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Methionine S-methyltransferase isoform 2" /protein_id="EOY25780.1" /db_xref="Phytozome:POPTR_0004s23890.1" /db_xref="TAIR:AT5G49810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTB2" /translation="KRRRSRERDRQCVCVKMKMVQVDEFLKQCQQSGDAAYTAFRSLL ERLEDPKTRCEARMFLSDLQSRVGSSDDCLQQYHFRIQDIYLDQYQGSQGRKKLTMMV IPSIFIPEDWSFTFYEGLNRHPDSIFKDKTVAELGCGNGWITIAIADKWLPAKVYGLD INPRAVKVSWINLYMNAFDEKGQPIYDEEKKTLLDRVEFHESDLLAYCREHDIQLERI VGCIPQILNPNPEAMSKMITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI AVIKPTGIMIFNMGGRPGQGVCKRLFERRGFLVNRLWQTKVLQAGDTDISALVEIEKN SPHRFEFFMGLTGDQPICARTAWAYGKAGGRISHALSVYSCQLRQPNQVKVIFEFLKS GFQEISSSLDLSFEDDSVADEKIPFLAYLARVLKENSYFPYEPPAGCNSFCNLIAAFL KTYHHIPLTSDNVVVFPSRTVAIENALRLFSPRLAIVDEHLTRNLPRQWLTSLAIETA ENGLSEDALTVIEAPRQSDLMIELIKKLKPQVVVTGIAHFEAVTSSAFVQLLDATREI GSRLLLDISDHFELSSLPGSSGVLKYLSGTPLPSHAAILCGLVKNQVYSDLEVAFVIS EEEAILKALSKTVEVLEGNTSLISQYYYGCLFHELLAFQLTDRHPHPEMIGFATSAIS VLNNSELSISDDRNSLIHMDVDQWFLPMPSVVKAAIFESFARQKMAESEIDVTPSIKQ FVNSNYGFSTDSSTEFIYSDCSQALFKNLVLCCILEGGTMCFPAGSNGNYVSVAKFLK ANIVKIPANSEEGFKLTEEILNKALETVNKPWVYISGPTINPTGLLYSNKEMENILTA CARFGARVVIDTSFSGLEFDFQGWGGWNLEGCLSKLSSSG" gene 1877713..1882407 /locus_tag="TCM_027148" /note="dbxref CacaoGD:Thecc1EG027148" mRNA join(1877713..1878032,1878130..1878308,1878684..1878767, 1880165..1880234,1880327..1880460,1880542..1880600, 1882059..1882407) /locus_tag="TCM_027148" /product="Modifier of snc1,4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04220.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s04220.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15510t2" CDS join(1877793..1878032,1878130..1878308,1878684..1878767, 1880165..1880234,1880327..1880460,1880542..1880596) /locus_tag="TCM_027148" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Modifier of snc1,4 isoform 1" /protein_id="EOY25781.1" /db_xref="Phytozome:POPTR_0015s04220.1" /db_xref="TAIR:AT3G18165.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949S9" /translation="MGGNGGEILMLEAPPEAARPWASASSAEILDALPYIDDDYGNPK VKEEVDRLVEEEMRRSTKKPADFLKDLPPLPSFNFQNHPMVGKEYERVRAGRPPVTLD FSSRYQVETPAINKRNDEGSWKQALHRSQRSLQHQVIRLENLELMLKYGPDVWKHNNQ RLEGFLARMQKLAQQQNDQIETVNRERKYHQQNTAYELNALSAQWKELCLKNIEIHSA CAHIENHIEELRREAAERGWNLEANLENGALSPSG" mRNA join(1877798..1878032,1878130..1878308,1878684..1878767, 1880165..1880234,1880327..1880350,1880577..1880782) /locus_tag="TCM_027148" /product="Modifier of snc1,4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04220.1" /inference="similar to AA sequence:ricco:29654.m000311" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc97t10; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15510t2" CDS join(1877820..1878032,1878130..1878308,1878684..1878767, 1880165..1880234,1880327..1880350,1880577..1880678) /locus_tag="TCM_027148" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29654.m000311" /codon_start=1 /product="Modifier of snc1,4 isoform 2" /protein_id="EOY25782.1" /db_xref="TAIR:AT3G18165.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949S9" /translation="MLEAPPEAARPWASASSAEILDALPYIDDDYGNPKVKEEVDRLV EEEMRRSTKKPADFLKDLPPLPSFNFQNHPMVGKEYERVRAGRPPVTLDFSSRYQVET PAINKRNDEGSWKQALHRSQRSLQHQVIRLENLELMLKYGPDVWKHNNQRLEGFLARM QKLAQQQNDQIETVNRERKYHQQNTAYELNLCHLQDSEVCFLVTVAFNSNLILCSVLV QRVSF" gene complement(1883142..1885660) /locus_tag="TCM_027149" /note="dbxref CacaoGD:Thecc1EG027149" mRNA complement(join(1883142..1883209,1883310..1883376, 1885441..1885660)) /locus_tag="TCM_027149" /product="NADH dehydrogenase (ubiquinone)s" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s23900.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s23900.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc2Loc85t12_C2" CDS complement(1885447..1885653) /locus_tag="TCM_027149" /codon_start=1 /product="NADH dehydrogenase (ubiquinone)s" /protein_id="EOY25783.1" /db_xref="Phytozome:POPTR_0004s23900.1" /db_xref="TAIR:AT1G14450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M9R9" /translation="MGKPLGPTGEFFRRRDEWRKHPMLGNQLRHATPGLGIALVAFGI YLVGEQVYNRVYAPSSSHHQSQSH" gene complement(1886203..1889389) /locus_tag="TCM_027150" /note="dbxref CacaoGD:Thecc1EG027150" mRNA complement(join(1886203..1886545,1886853..1886969, 1887088..1887196,1887529..1887610,1887801..1888008, 1888289..1888312,1888407..1888580,1888745..1888882, 1888966..1889100,1889185..1889389)) /locus_tag="TCM_027150" /product="JHL06P13.4 protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s20650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038073t1" /inference="similar to AA sequence:frave:gene31029" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(1886309..1886545,1886853..1886969, 1887088..1887196,1887529..1887610,1887801..1888008, 1888289..1888312,1888407..1888580,1888745..1888882, 1888966..1889100,1889185..1889202)) /locus_tag="TCM_027150" /note="dbxref frave:gene31029; paralog of Thecc1EG038073t1" /codon_start=1 /product="JHL06P13.4 protein, putative" /protein_id="EOY25784.1" /db_xref="TAIR:AT1G80170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NUB5" /translation="MSLRTMDPSSTAYVTCLVSIIAICISANAQQNVFNVQSYGAAGN GITDDSLAFMKAWKDTCGAGTGIPTMIIPKGKIFLVNPITFTGPCKPSIINVKLSGTI VAPNGPDQWKAADLSTWLAFQDVNGLTIDGPGTMDGSGKGWWDRSCKLHPGHQGCIRL APTVLKFARCNNIHMSNIKFQNSPQTHVLVLGCQDVDFGFLTVQAPGTSPNTDGIHIQ ISRNVSIYNSQIGDGDDCISIGDLTSDINITNINCGPGHGVSIGSLGKDGGEAQVKNI NVRGVNFRGTTNGVRIKTWQTGRGVVESVSFSNINFTAVENPIIIDQFYCDVPNSCTE TNTGVHINGVLYSQLYGTSRTQVAINLNCSDNFPCTGITLENIQLASATRGGHLVSSC NNAIGVSRGIVEPKSCLPNII" gene complement(1890260..1896230) /locus_tag="TCM_027151" /note="dbxref CacaoGD:Thecc1EG027151" mRNA complement(join(1890260..1890918,1891317..1891380, 1891488..1891804,1892540..1892724,1893310..1893366, 1893703..1893821,1893925..1894156,1894277..1894449, 1895150..1895250,1895696..1895809,1895936..1896230)) /locus_tag="TCM_027151" /product="DEAD/DEAH box RNA helicase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400036118" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037013t3" /inference="similar to AA sequence:frave:gene11642" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:PASA:2:TSA:puevd3b026248t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15562t3" mRNA complement(join(1890295..1890918,1891317..1891380, 1891488..1891571,1891660..1891804,1892540..1892724, 1893310..1893366,1893703..1893821,1893925..1894156, 1894277..1894449,1895150..1895250,1895696..1895809, 1895936..1896230)) /locus_tag="TCM_027151" /product="DEAD/DEAH box RNA helicase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400036118" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037013t2" /inference="similar to AA sequence:Phytozome:GSVIVT01017308001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15562t3" mRNA complement(join(1890295..1890918,1891317..1891383, 1893310..1893366,1893703..1893821,1893925..1894156, 1894277..1894449,1895150..1895250,1895696..1895809, 1895936..1896105)) /locus_tag="TCM_027151" /product="DEAD/DEAH box RNA helicase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400036118" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037013t3" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc47t18; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15562t3; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc47t9" CDS complement(join(1890908..1890918,1891317..1891383, 1893310..1893366,1893703..1893821,1893925..1894156, 1894277..1894449,1895150..1895250,1895696..1895808)) /locus_tag="TCM_027151" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG037013t3" /codon_start=1 /product="DEAD/DEAH box RNA helicase family protein isoform 3" /protein_id="EOY25787.1" /translation="MGEIKDNDAYEEELLDYEEEDEKAPDSVSAKAADSAKKGYVGIH SSGFRDFLLKPELLRSIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVL STLQQIEPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVSVFYGGVNIKVHKD LLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQQVQARFEVDIK ELPEQIDTSTYMPS" CDS complement(join(1890908..1890918,1891317..1891380, 1891488..1891571,1891660..1891804,1892540..1892724, 1893310..1893366,1893703..1893821,1893925..1894156, 1894277..1894449,1895150..1895250,1895696..1895808)) /locus_tag="TCM_027151" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037013t2" /codon_start=1 /product="DEAD/DEAH box RNA helicase family protein isoform 1" /protein_id="EOY25785.1" /db_xref="Phytozome:GSVIVT01017308001" /db_xref="TAIR:AT5G11170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JWF6" /translation="MGEIKDNDAYEEELLDYEEEDEKAPDSVSAKAADSAKKGYVGIH SSGFRDFLLKPELLRSIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVL STLQQIEPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVSVFYGGVNIKVHKD LLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLGELEKN RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSF KEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV SSSSDSDVLNQVQARFEVDIKELPEQIDTSTYMPS" CDS complement(join(1891564..1891804,1892540..1892724, 1893310..1893366,1893703..1893821,1893925..1894156, 1894277..1894449,1895150..1895250,1895696..1895808)) /locus_tag="TCM_027151" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene11642; paralog of Thecc1EG037013t3" /codon_start=1 /product="DEAD/DEAH box RNA helicase family protein isoform 2" /protein_id="EOY25786.1" /db_xref="TAIR:AT5G11170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JWF6" /translation="MGEIKDNDAYEEELLDYEEEDEKAPDSVSAKAADSAKKGYVGIH SSGFRDFLLKPELLRSIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVL STLQQIEPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVSVFYGGVNIKVHKD LLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLGELEKN RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSF KEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVSSVFILQSNQSHVDLD FLFFFCEFSVNAGG" mobile_element complement(1892912..1893015) /note="source:scaffold_3_CACTA_0387 1101 1208" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1896219..1896290 /note="source:CACAO_Mariner_E220_scaffold_9 9007 9078" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(1896602..1897009) /note="source:scaffold_9_CACTA_0946 17793 18236" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1897362..1897451 /note="source:scaffold_10_CACTA_0127 7382 7473" /mobile_element_type="transposon:TIR/CACTA" gene complement(1897528..1902512) /locus_tag="TCM_027152" /note="dbxref CacaoGD:Thecc1EG027152" mRNA complement(join(1897528..1898111,1898281..1898388, 1898694..1899058)) /locus_tag="TCM_027152" /product="Embryo-specific protein 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g01160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015015t1" /inference="similar to AA sequence:ricco:29841.m002842" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc603t7" CDS complement(join(1897848..1898111,1898281..1898388, 1898694..1898831)) /locus_tag="TCM_027152" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29841.m002842; paralog of Thecc1EG015015t1" /codon_start=1 /product="Embryo-specific protein 3 isoform 1" /protein_id="EOY25788.1" /db_xref="TAIR:AT5G62200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GH47" /translation="MIRAVTLLLPLTFIFFNVADATRILPLPQLQPQPQPVKSLKINA SQDVGSCSYTVSIRTSCSSTSYTRDQISLAFGDAYGNQVYAPRLDDPYSRTFERCSTD TFQIKGPCTYQVCSLYLYRSGNDGWKPESVTVYGYYTKSVTFYYNTFIPYGVWYGFNL CNGGASASS" mRNA complement(join(<1897891..1898111,1898281..1898388, 1898694..1899055,1902478..1902512)) /locus_tag="TCM_027152" /product="Embryo-specific protein 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g01160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015015t1" /inference="similar to AA sequence:ricco:29841.m002842" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial3; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc603t7; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc603t7" CDS complement(join(<1897893..1898111,1898281..1898388, 1898694..1898831)) /locus_tag="TCM_027152" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29841.m002842; paralog of Thecc1EG015015t1" /codon_start=1 /product="Embryo-specific protein 3 isoform 2" /protein_id="EOY25789.1" /db_xref="TAIR:AT5G62200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GH47" /translation="MIRAVTLLLPLTFIFFNVADATRILPLPQLQPQPQPVKSLKINA SQDVGSCSYTVSIRTSCSSTSYTRDQISLAFGDAYGNQVYAPRLDDPYSRTFERCSTD TFQIKGPCTYQVCSLYLYRSGNDGWKPESVTVYGYYTKSVTFYYNTFIPYGVW" gene complement(1900601..1903198) /locus_tag="TCM_027154" /note="dbxref CacaoGD:Thecc1EG027154" mRNA complement(join(1900601..1901436,1902478..1902512, 1903121..1903198)) /locus_tag="TCM_027154" /product="DNA-directed RNA polymerase III subunit rpc6, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s04090.1" /inference="similar to AA sequence:ricco:30190.m010921" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11983t00001; alternateUTRof:Thecc1EG027154t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g552t2; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc5777t1" mRNA complement(join(1900602..1901436,1902478..1902512, 1902771..1902985,1903122..1903183)) /locus_tag="TCM_027154" /product="DNA-directed RNA polymerase III subunit rpc6, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s04090.1" /inference="similar to AA sequence:ricco:30190.m010921" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g552t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g552t2" CDS complement(1900722..1901435) /locus_tag="TCM_027154" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m010921" /codon_start=1 /product="DNA-directed RNA polymerase III subunit rpc6, putative isoform 1" /protein_id="EOY25790.1" /db_xref="TAIR:AT5G23710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLD0" /translation="MSRLQGPNALKRKRPGATSDSLTEHERIVHDVIQGKQDMGISQR DMKREINLPDNLVTKCLKSLLAKNLIKEVKNIQNRGRKHFISAEFEPSNEITGGAWYV EGSLDTEYINVLKEQCWRKIYGLKVATLEGVTDAIKRSNVSQIELSKQQIEEIVKALV LDNEVMEVKSSGTGEFASIPVGKVCYKCIGKRGYGGEPKVGTMASIPCGVCPQISHCT PDGIISPKTCVYYKKWLDF" CDS complement(1900722..1901435) /locus_tag="TCM_027154" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m010921" /codon_start=1 /product="DNA-directed RNA polymerase III subunit rpc6, putative isoform 1" /protein_id="EOY25791.1" /db_xref="TAIR:AT5G23710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLD0" /translation="MSRLQGPNALKRKRPGATSDSLTEHERIVHDVIQGKQDMGISQR DMKREINLPDNLVTKCLKSLLAKNLIKEVKNIQNRGRKHFISAEFEPSNEITGGAWYV EGSLDTEYINVLKEQCWRKIYGLKVATLEGVTDAIKRSNVSQIELSKQQIEEIVKALV LDNEVMEVKSSGTGEFASIPVGKVCYKCIGKRGYGGEPKVGTMASIPCGVCPQISHCT PDGIISPKTCVYYKKWLDF" mobile_element 1902608..1902672 /note="source:CACAO_Mutator_E161_scaffold_1 3831 3909" /mobile_element_type="transposon:TIR/Mutator" gene complement(1904238..1905298) /locus_tag="TCM_027155" /note="dbxref CacaoGD:Thecc1EG027155" mRNA complement(join(1904238..1904674,1904751..1904874, 1904985..1905298)) /locus_tag="TCM_027155" /product="SPX domain gene 1, putative" /inference="alignment:exonerate- protein:2:ricco:29841.m002844" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037010t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s19380.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g16469t00001" CDS complement(join(1904505..1904674,1904751..1904874, 1904985..1905272)) /locus_tag="TCM_027155" /note="paralog of Thecc1EG037010t1" /codon_start=1 /product="SPX domain gene 1, putative" /protein_id="EOY25792.1" /db_xref="Phytozome:POPTR_0001s19380.1" /db_xref="TAIR:AT5G20150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GH45" /translation="MKHGKKHRAEVAKSLPGWKRKFMSYKALKQQVKLVNPHFNGKKR SRLDNGKYSVGGSSERNSPVQDTGFTLLLDRELHKVNTFYIDKEEDYVISFRELQIRA ENLNGDEEKLELQKDIVDFHAEMVMLLHFSVTNVTGLIKIVKKHKKKAGASVYSPCTP RVLQQPFFSTDLLYNLIRGCEAILDSLSPPSDP" gene complement(1906372..1910427) /locus_tag="TCM_027156" /note="dbxref CacaoGD:Thecc1EG027156" mRNA complement(join(1906372..1906459,1907032..1907156, 1907589..1907668,1910218..1910427)) /locus_tag="TCM_027156" /product="SNARE-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017313001.2" /inference="similar to AA sequence:Phytozome:Glyma08g22580.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc521t8; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc521t7; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc413t8_C2" mRNA complement(join(1906372..1906459,1907032..1907156, 1907589..1907668,1908900..1909013,1910218..1910427)) /locus_tag="TCM_027156" /product="SNARE-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017313001.2" /inference="similar to AA sequence:Phytozome:Glyma08g22580.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc521t7; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc521t7" CDS complement(join(1906388..1906459,1907032..1907156, 1907589..1907668,1910218..1910270)) /locus_tag="TCM_027156" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="SNARE-like superfamily protein isoform 2" /protein_id="EOY25794.1" /db_xref="Phytozome:Glyma08g22580.2" /db_xref="TAIR:AT1G15370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XI32" /translation="MILALLFANSEGNILVERSVYIVYTVLGDVSVYVVGKDEYDELA LAEVIFVITSAVKDVCGKPPTERLFLDKYGKICLSLDEIIWKGYMENTDKDRIRRLVR LKPPTEF" CDS complement(join(1906388..1906459,1907032..1907156, 1907589..1907668,1908900..1909013,1910218..1910270)) /locus_tag="TCM_027156" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="SNARE-like superfamily protein isoform 1" /protein_id="EOY25793.1" /db_xref="Phytozome:Glyma08g22580.1" /db_xref="TAIR:AT1G15370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XI32" /translation="MILALLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKG VKNEELLVASHKSVYIVYTVLGDVSVYVVGKDEYDELALAEVIFVITSAVKDVCGKPP TERLFLDKYGKICLSLDEIIWKGYMENTDKDRIRRLVRLKPPTEF" gene complement(1915763..1917263) /locus_tag="TCM_027157" /note="dbxref CacaoGD:Thecc1EG027157" mRNA complement(join(1915763..1916487,1917098..1917263)) /locus_tag="TCM_027157" /product="Integrase-type DNA-binding superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29841.m002846" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038081t1" /inference="similar to AA sequence:ricco:28320.m001139" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g549t1" CDS complement(join(1915995..1916487,1917098..1917177)) /locus_tag="TCM_027157" /note="dbxref ricco:28320.m001139; paralog of Thecc1EG038081t1" /codon_start=1 /product="Integrase-type DNA-binding superfamily protein" /protein_id="EOY25795.1" /db_xref="TAIR:AT1G15360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MWP8" /translation="MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAR AYDEAAILMSGRNAKTNFPVAKNQAGNGNPAASSSSTSATSSLSSILSEKLRKCCKTP SPSLTCLRLDTENSHIGVWQKRAGARPDSSWVMTVELGKKNVGEVAEINKKRPVSEEP GEMMGQEVGDGLDEEQKAALQMIEELLNRN" mobile_element 1923088..1923308 /note="source:INTACT135F_F90_scaffold_2-int 13385 13979" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1923309..1923670 /note="source:CACAO_Mutator_E1888_scaffold_9 7431 7796" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1924292..1925279) /note="source:CACAO_M_E22854_F86_scaffold_3 1924 2912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1925380..1927299) /note="source:CACAO_M_E4460_F86_scaffold_2 1 1929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1930258..1930520 /note="source:CACAO_M_S_E38262_F319_scaffold_4 13847 14109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1933956..1934150) /note="source:CACAO_M_E5800_F12_scaffold_2 8996 9192" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1944734..1956678 /locus_tag="TCM_027158" /note="dbxref CacaoGD:Thecc1EG027158" mRNA join(1944734..1944859,1950761..1951104,1951307..1951409, 1952931..1954830,1955249..1956678) /locus_tag="TCM_027158" /product="Phospholipase D alpha 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g03490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038087t1" /inference="similar to AA sequence:ricco:29841.m002847" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:PASA:2:TSA:puevd3b026255t1a2; alternateUTRof:Thecc1EG027158t1; inference alignment:Newbler:10:TSA:cgbaL_g11705t00001" mRNA join(1944734..1944859,1950761..1951100,1951307..1951409, 1952931..1954830,1955249..1956678) /locus_tag="TCM_027158" /product="Phospholipase D alpha 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g03490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038087t1" /inference="similar to AA sequence:ricco:29841.m002847" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11705t00001" mRNA join(1950766..1951100,1951307..1951409,1952931..1954821, 1955011..1955017,1955248..1955282,1955301..1955357, 1955815..1956545) /locus_tag="TCM_027158" /product="Phospholipase D alpha 2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g03490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038087t1" /inference="similar to AA sequence:ricco:29841.m002847" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc10t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc10t2; inference alignment:Newbler:10:TSA:cgbaL_g11705t00001" CDS join(1951314..1951409,1952931..1954830,1955249..1955682) /locus_tag="TCM_027158" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29841.m002847; paralog of Thecc1EG038087t1" /codon_start=1 /product="Phospholipase D alpha 2 isoform 1" /protein_id="EOY25796.1" /db_xref="TAIR:AT1G52570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q70EW5" /translation="MEDILLHGTLHVTIYEADKLHSGGGGGHFFRKLMANVEETIGIG KGIPKIYATIDLERARVGRTRIIEKEISNPRWYESFHIYCAHRASNVVFTVKDDNPIG ATLIGRAYVSVDELLSGEEVDRWVEILDEDKNPIESGGKIHVKLQYFDVTRDRNWNRG IISRKFPGVPFTFYSQRQGCKVSLYQDAHIPDGFVPKIPLAGGKYFEPHRCWEDVFDA ITNAKHLICITGWSVYTEITLVRDSRRPKPGGDITLGDLLKKKASEGVRVNMLVWDDR TSVGLLKKDGLMATHDEETENFFKDTDVNCVLCPRNPDDGGSFVQDLQISTMFTHHQK IVVVDAAMPNGDTETRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTG AAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDVLVKLRELEGIIIPPS PVTFLDDHETWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINA IRRAKNYIYIENQYFLGSSFGWSADGIKPEDINALHLIPKELSLKIVSKIQAGERFTV YVVVPMWPEGIPESASVQAILDWQKRTMDMMYSDIINALRDKGSEEDPRNYLTFFCLG NREVKNGGEYEPSEKPEPDTDYARAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRS MDGARDSEIAMGAYQPYHLSVRQPARGQVHGFRMALWYEHLGMLDDTFLFPESEECVR KVNQIADKYWDLYSSESLERDLPGHLLRYPIGISSEGTVTELPGFEFFPDTKARVLGA KSDYLPPILTT" CDS join(1951314..1951409,1952931..1954830,1955249..1955682) /locus_tag="TCM_027158" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29841.m002847; paralog of Thecc1EG038087t1" /codon_start=1 /product="Phospholipase D alpha 2 isoform 1" /protein_id="EOY25797.1" /db_xref="TAIR:AT1G52570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q70EW5" /translation="MEDILLHGTLHVTIYEADKLHSGGGGGHFFRKLMANVEETIGIG KGIPKIYATIDLERARVGRTRIIEKEISNPRWYESFHIYCAHRASNVVFTVKDDNPIG ATLIGRAYVSVDELLSGEEVDRWVEILDEDKNPIESGGKIHVKLQYFDVTRDRNWNRG IISRKFPGVPFTFYSQRQGCKVSLYQDAHIPDGFVPKIPLAGGKYFEPHRCWEDVFDA ITNAKHLICITGWSVYTEITLVRDSRRPKPGGDITLGDLLKKKASEGVRVNMLVWDDR TSVGLLKKDGLMATHDEETENFFKDTDVNCVLCPRNPDDGGSFVQDLQISTMFTHHQK IVVVDAAMPNGDTETRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTG AAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDVLVKLRELEGIIIPPS PVTFLDDHETWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINA IRRAKNYIYIENQYFLGSSFGWSADGIKPEDINALHLIPKELSLKIVSKIQAGERFTV YVVVPMWPEGIPESASVQAILDWQKRTMDMMYSDIINALRDKGSEEDPRNYLTFFCLG NREVKNGGEYEPSEKPEPDTDYARAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRS MDGARDSEIAMGAYQPYHLSVRQPARGQVHGFRMALWYEHLGMLDDTFLFPESEECVR KVNQIADKYWDLYSSESLERDLPGHLLRYPIGISSEGTVTELPGFEFFPDTKARVLGA KSDYLPPILTT" CDS join(1951314..1951409,1952931..1954821,1955011..1955017, 1955248..1955266) /locus_tag="TCM_027158" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29841.m002847; paralog of Thecc1EG038087t1" /codon_start=1 /product="Phospholipase D alpha 2 isoform 3" /protein_id="EOY25798.1" /db_xref="TAIR:AT1G52570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q70EW5" /translation="MEDILLHGTLHVTIYEADKLHSGGGGGHFFRKLMANVEETIGIG KGIPKIYATIDLERARVGRTRIIEKEISNPRWYESFHIYCAHRASNVVFTVKDDNPIG ATLIGRAYVSVDELLSGEEVDRWVEILDEDKNPIESGGKIHVKLQYFDVTRDRNWNRG IISRKFPGVPFTFYSQRQGCKVSLYQDAHIPDGFVPKIPLAGGKYFEPHRCWEDVFDA ITNAKHLICITGWSVYTEITLVRDSRRPKPGGDITLGDLLKKKASEGVRVNMLVWDDR TSVGLLKKDGLMATHDEETENFFKDTDVNCVLCPRNPDDGGSFVQDLQISTMFTHHQK IVVVDAAMPNGDTETRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTG AAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDVLVKLRELEGIIIPPS PVTFLDDHETWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINA IRRAKNYIYIENQYFLGSSFGWSADGIKPEDINALHLIPKELSLKIVSKIQAGERFTV YVVVPMWPEGIPESASVQAILDWQKRTMDMMYSDIINALRDKGSEEDPRNYLTFFCLG NREVKNGGEYEPSEKPEPDTDYARAQEARRFMIYVHAKNESLMMNT" gene 1956727..1962351 /locus_tag="TCM_027159" /note="dbxref CacaoGD:Thecc1EG027159" mRNA join(1956727..1956935,1961063..1961560,1961676..1962351) /locus_tag="TCM_027159" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400001229" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038088t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s19340.1" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15525t1" CDS join(1961422..1961560,1961676..1961911) /locus_tag="TCM_027159" /note="paralog of Thecc1EG038088t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25799.1" /db_xref="Phytozome:POPTR_0001s19340.1" /db_xref="TAIR:AT1G52565.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PGU9" /translation="MSSGICSQGLVLATAMVVSSTVIFLTFSRQKTLPPSKQTLRSCL SSEGKRRGRKKKKVQFAENVKDTSGNGEEYRKEQNKKLIAATAGRSRKVDRFCRNEMP ENRIALYNGILRDRVHRMECSY" gene 1965294..1969871 /locus_tag="TCM_027160" /note="dbxref CacaoGD:Thecc1EG027160" mRNA join(1965294..1965383,1965534..1965601,1967381..1967637, 1967817..1967907,1968948..1969014,1969096..1969871) /locus_tag="TCM_027160" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29841.m002849" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037003t1" /inference="similar to AA sequence:ricco:29841.m002849" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc217t1" CDS join(1965597..1965601,1967381..1967637,1967817..1967907, 1968948..1969014,1969096..1969149) /locus_tag="TCM_027160" /note="dbxref ricco:29841.m002849; paralog of Thecc1EG037003t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25800.1" /db_xref="TAIR:AT1G15350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RV58" /translation="MGGCLGCYKRPTFNPLVNESSKGLNVQDQTVRKASISEDFWTTS TCDMDNSAVQSQGSISSISTSNQTLDPHDSAASANAPSEFVNHGLLLWNQSRQRWVGN KKFKNRPRQGREPKLNWNATYESLLGSNKPFPQPIPLAEMIDFLVDIWEQEGLYD" gene 1970366..1971641 /locus_tag="TCM_027161" /note="dbxref CacaoGD:Thecc1EG027161" mRNA join(1970366..1970845,1970965..1971641) /locus_tag="TCM_027161" /product="HSP20-like chaperones superfamily protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G52560.2" /inference="similar to AA sequence:Phytozome:GSVIVT01017322001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g666t3" CDS join(1970539..1970845,1970965..1971365) /locus_tag="TCM_027161" /codon_start=1 /product="HSP20-like chaperones superfamily protein, putative" /protein_id="EOY25801.1" /db_xref="Phytozome:GSVIVT01017322001" /db_xref="TAIR:AT1G52560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSQ8" /translation="MALARLALRNLQQRVSSSSSFLGHNMGDQRSIVGGVQRQRWNDE ILKRFMVTATGKVFDEEKQGKEATVLEGDKKSRLFPRRKNRSLWNWRNKRSDYAPTLY GLGNALLQATENINRLFDNLNLTPSQLMGRVKEQDGCYKLRYDMPGLTKEDVQITIED GVLTIKGEHKEEEEGGSDDDEHWSARSYGYYNTSLVLPEDAKVDEIKAELKDGVLCII IPRTEQPKKDVKEVQIH" gene 1973360..1973996 /locus_tag="TCM_027162" /note="dbxref CacaoGD:Thecc1EG027162" mRNA 1973360..1973996 /locus_tag="TCM_027162" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29841.m002851" /inference="similar to AA sequence:Phytozome:Glyma15g01070.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS 1973431..1973862 /locus_tag="TCM_027162" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25802.1" /db_xref="Phytozome:Glyma15g01070.1" /translation="MATSRICSNRLKVAITVTSIFFITFLYTSGDSIRKLFEFCFNNF FLFFFLVSRVERIIIYAAFAVGILNSGHSESMVQQSKMVLGSKPPSCVNKCLNCSPCM ATLVIPSHQWKHFRATYHGDEDESYYLLSWKCKCGDKLFQP" gene 1975556..1979212 /locus_tag="TCM_027163" /note="dbxref CacaoGD:Thecc1EG027163" mRNA join(1975556..1975882,1976575..1976724,1978051..1979212) /locus_tag="TCM_027163" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g22650.1" /note="quality class is strong-utrpoor-expresste, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc900t8_C1" CDS join(1975657..1975882,1976575..1976720) /locus_tag="TCM_027163" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25803.1" /translation="MVMATAFSHRSSFTYFNSKSFNPDSLRPLIVTPFHPHRPCLPVR LRSSSNTSQPRCHSAGPGPASSPDSDPPRPPGFAGKLSRFQDRAQIFLAVLFWMSLFF WASAWDRNNSGRPDKGSRFRR" mobile_element 1977848..1978965 /note="source:INTACT700_F304_scaffold_7-int 5993 7111" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1978966..1979133 /note="source:INTACT58_F125_scaffold_5-int 10993 11159" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1979132..1979598 /note="source:INTACT444_F216_scaffold_4-int 17514 17860" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1980243..1980600 /note="source:INTACT666_F293_scaffold_9-int 1183 1437" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1980364..1980739) /note="source:INTACT554_F250_scaffold_7-int 14948 16632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1980740..1982101) /note="source:CACAO_M_E34142_F67_scaffold_4 3857 5269" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1982402..1982677) /note="source:scaffold_5_CACTA_0614 155 433" /mobile_element_type="transposon:TIR/CACTA" gene 1984083..1987818 /locus_tag="TCM_027165" /note="dbxref CacaoGD:Thecc1EG027165" mRNA join(1984083..1984463,1984903..1985603,1985708..1985763, 1985847..1986514,1986915..1987087,1987426..1987818) /locus_tag="TCM_027165" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene15690" /inference="similar to AA sequence:ricco:29841.m002853" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g571t1" CDS join(1985449..1985603,1985708..1985763,1985847..1986514, 1986915..1987087,1987426..1987591) /locus_tag="TCM_027165" /note="dbxref ricco:29841.m002853" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY25804.1" /db_xref="TAIR:AT1G80130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IMY5" /translation="MTMLLLLMPLLSVPQWYQDRPCVSALEALSLQVPLPIASVDFYG ESNTPKTISLLFLVREFLCPLTSLSKDFLYFCSVLLVSWTCDSKKHMKMLLRSSSTPI LNSWLPHSKDCSSPEPDFPNFQRNRSVYSPSPSDDHRQKLTQTLADINIQNGTPKPRK KKDKAIIPTSHSVDKHAKQESDQVKESKPNSCSIQRLFSSSGLGAKIVDEDGEDSIVM QTPVMGDGAGNHGGKSCGGGGRGGGSDAGDDGGVSGCFESNNHGSDSTDVYYQKMIEA NPGNPLLLGNYAKFLKEIRGDFAKAEEYCGRAILMNPDDGNVLSLYADLIWQNQKDAH RAKSYFDRAVKTAPDDCFVLASYAKFLWDAEELEEEEEEHDQSRQETEHSRISHPDFF LRPPHNPPITAAS" gene complement(1989366..1990528) /locus_tag="TCM_027167" /note="dbxref CacaoGD:Thecc1EG027167" mRNA complement(1989366..1990528) /locus_tag="TCM_027167" /product="Uncharacterized protein" /note="quality class is medium-expresste, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.45 coverage" CDS complement(1989664..1989978) /locus_tag="TCM_027167" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25805.1" /translation="MRSFGGDPTEITLKSSLQIPSSILSFQPFSFAVIRHLFHLFSSF TTCHPKRLLQSSSLLPLAHPYSLIAARPLSLIKRTLYRDKVSQSCSRLFKPVTSFGSW HC" mobile_element complement(1989735..1990726) /note="source:CACAO_M_E52630_F119_scaffold_7 1 925" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1991706..1995319) /locus_tag="TCM_027168" /note="dbxref CacaoGD:Thecc1EG027168" mRNA complement(join(1991706..1994616,1995060..1995319)) /locus_tag="TCM_027168" /product="S-domain-2 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017326001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036997t1" /inference="similar to AA sequence:ricco:29841.m002854" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g588t1" CDS complement(1992203..1994611) /locus_tag="TCM_027168" /note="dbxref ricco:29841.m002854; paralog of Thecc1EG036997t1" /codon_start=1 /product="S-domain-2 5" /protein_id="EOY25806.1" /db_xref="TAIR:AT4G32300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IKX5" /translation="MGLFKARILCFCLLLAFKVCIAVDQNVGKIYPGFRASQMQWVEH DGRFLLSKNKIFGFGFYTGLDPQSFVLVIIHLQTSQVVWTANRGGLLVDKSDKFVFDD NGNVYLERKDKVAWATNTTGKRATAMELLDSGNLVLHGDNGRTLWQSFSYPTDTLLSN QEFVEGMSLKSFPRNCKSDYLEFKSGDLVLYTGFQTPQTYWSLLDEIQKLSKNFTGKV HSARLVFNSWNFYDQNKVLLWQFNFSQNSDVNVTWAAKLGADGAIVFYNLRQSRVIAE ATKIPQNPCDIPDYCPPLMVCYFETVCQCPKHLRVQNDCRPPVVSHCGSVDLLYVGQR LDYSVLQFVKPYLNSDIDACKKACLGNCSCAALFFENSTGKCFLFDHIAGLKRAELGS SGFVSYVKVSKNENGANNRHVIIIVIIVVATILVIAGLLYVGFCYYRKQKQLLECAQE NLEEDNFLDSFSGMPVRYSYGELCKATKDFSTKVGQGGFGSVYRGVMPDGTPLAVKKL EGIGQGKKEFRAEVRIIGSIHHVHLVKLKGFCSEGVHRLLVYEFMGKGSLDKWIFKNS EESNILDWDTRFNIALGTAKGLAYLHEECELKIVHCDIKPENVLLDDHFNAKVSDFGL AKLMSREESLVYTTLRGTRGYLAPEWITNNPISEKSDVYSYGMVLLEIIGGRKSYDPG EISEKAYLPAFAFKTLEEGNLKEILDPKLDVNGNDERFVTAIKVALWCIQEEMRLRPP MTKVVQMLEGLCDVPQPPLSSLPGVRAYSGCLKWSSDGCSSSGQTEYNSDAFLSDVRL SGPR" mobile_element complement(1996496..1996557) /note="source:CACAO_M_S_E122136_F76_scaffold_10 13648 13708" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1998824..1998885 /note="source:CACAO_M_E5899_F5_scaffold_2 20742 20804" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2002604..2008292 /locus_tag="TCM_027169" /note="dbxref CacaoGD:Thecc1EG027169" mRNA join(2002604..2002874,2007085..2008292) /locus_tag="TCM_027169" /product="Methyl-CPG-binding domain 10" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g44230.1" /inference="similar to AA sequence:ricco:29841.m002855" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15548t1" CDS join(2002815..2002874,2007085..2008020) /locus_tag="TCM_027169" /note="dbxref ricco:29841.m002855" /codon_start=1 /product="Methyl-CPG-binding domain 10" /protein_id="EOY25807.1" /db_xref="TAIR:AT3G15790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RV64" /translation="MESLEVISVELPAPASWKKMYFPKKVGSPRKTEIMFVAPTGEEI NNRKQLEQYLKSHPGNPPIAEFDWGTGETPRRSARISEKAKATPTPEKEPPKKRGRRS LSAKKENKETEAVPEKAEGEKGSEKQDTQATVKETAEGEKEKDGEVKQVENGGKTKAA DLTGDSDAKMEEPGEEEAGKDVKIPDTAKDDKKGEAAGTAENPTSMEFQEKPAEACCT DGTPTEEEKVEAPIEKVPQTQAEKENGTCEKQSENPETVTMEANGGVEKENPYGATFV PEGEAKEKQGVLEVSGKCNVQVEEKGKAVDGELIENGKVGQTDAPQPPGPAAISC" gene 2009028..2026798 /locus_tag="TCM_027171" /note="dbxref CacaoGD:Thecc1EG027171" mRNA join(2009028..2009160,2009339..2009584,2010044..2011080, 2011218..2011282,2012513..2012709,2013301..2013769, 2017844..2018071,2026593..2026798) /locus_tag="TCM_027171" /product="Glycosyl hydrolase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s02710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038109t1" /inference="similar to AA sequence:Phytozome:Glyma15g01030.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1627t1" CDS join(2009395..2009584,2010044..2011080,2011218..2011282, 2012513..2012709,2013301..2013710) /locus_tag="TCM_027171" /note="paralog of Thecc1EG038109t1" /codon_start=1 /product="Glycosyl hydrolase superfamily protein" /protein_id="EOY25808.1" /db_xref="Phytozome:Glyma15g01030.1" /db_xref="TAIR:AT3G15800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GH37" /translation="MGMPAEQVLHSFCFRLLSHKRLEYIPTSFLQMECTFFHYLATSH MGSTLFLWLLLIFSVLCSPVAAAHSATWTYGVNYGRIANNLPAPESVVTLLKAAKINH VRIYDADHGVLQAFKGSGIDIIVGLPNEYLKEISIGEDRAMIWVKENVQAFLPGTRIR GIAVGNEILGSGPIELWEVLLSAAKNIYSALYRLGLKDTVQVSSPHSEAVFANSFPPS ACIFRPDVLPFMRPLLQFFSQIGSPFYINAYPFLAYKNDPEHIDINYALFKDNAGIYD AKTKLHYDNMFEAQVDAAYAALEKAGFPKMEVIVSETGWASRGDPDEAGATVKNAKTY NKNLRKRLAKKKGTPFRPKMVVRAYVFALFNENSKPGPTSERNFGLFKPDGSIAYNIG FTGLVPSAAASSFLSFKDIAVQGWFFMAWAVVLLQSLGFCERSMARFMCMAVVGIVAA VSLMQCAEAQTVHVVGGDMGWTVPQNGAAAYSTWAAGKRFMVGDILEFNFATNEHDVL QVPKASFDACSNDNPIGSNITVGPANVTLTSAGENYFICTFGQHCQFGQKLAITVSGS SDSPLPAPSPTSTPTTPNSPCPTSGPTGSTPSGSAPDPNGNTNSSSSAVLASLLLSML AIVMGLIA" gene 2013852..2015291 /locus_tag="TCM_027172" /note="dbxref CacaoGD:Thecc1EG027172" mRNA join(2013852..2013991,2014775..2015291) /locus_tag="TCM_027172" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is utrpoor_complete" CDS 2014992..2015213 /locus_tag="TCM_027172" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25809.1" /translation="MGNYNTSCACGTQGQTIKRENDTSTGRKWVLKAFCDKLEKDWEK ERVKMKEKKRTMSGKNGLALLQQDHFFFS" mobile_element 2015437..2016016 /note="source:CACAO_M_S_E122136_F76_scaffold_10 1 570" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2015953..2016013 /note="source:CACAO_Again_on_E205_scaffold_9 5110 5191" /mobile_element_type="transposon:TIR/hAT" mobile_element 2018982..2020932 /note="source:CACAO_M_E23009_F76_scaffold_4 551 2514" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2020925..2023720) /note="source:CACAO_M_S_E119572_F76_scaffold_9 1 2827" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2026906..2028148) /locus_tag="TCM_027175" /note="dbxref CacaoGD:Thecc1EG027175" mRNA complement(join(2026906..2027406,2027833..2028148)) /locus_tag="TCM_027175" /product="UPF0706 protein" /inference="alignment:exonerate- protein:2:ricco:29841.m002859" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038117t1" /inference="similar to AA sequence:ricco:29841.m002859" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15539t2" CDS complement(join(2027011..2027406,2027833..2028057)) /locus_tag="TCM_027175" /note="dbxref ricco:29841.m002859; paralog of Thecc1EG038117t1" /codon_start=1 /product="UPF0706 protein" /protein_id="EOY25810.1" /db_xref="TAIR:AT3G15810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PH38" /translation="MKAGLVVDGEYIYEEEKHLTVLKTSLFFANDGFTVYDCKGQLVF RVDSYGPGPRDKGEVVLMDAHGRCLLTVRRKRPSLHHRWEGFLGERSEGQKPIFSLKR SSIIGRCGMTVEVFNSPGEEYQIEGNFGQRSCTILNAGKELVAEIKRKVDASTNVVLG KDVFLLSLKPGFDGAFAMGLVLVLDQINGDDYVQYDGAEISPTAED" mobile_element complement(2032929..2033011) /note="source:INTACT296_F13_scaffold_9-int 13151 13220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2033550..2033949 /note="source:scaffold_8_CACTA_0867 7808 8181" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2034949..2035505 /note="source:scaffold_4_CACTA_0482 16794 17340" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2040303..2040837 /note="source:INTACT503_F2_scaffold_1-int 533 1070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2040815..2042857) /note="source:CACAO_M_E69958_F2_scaffold_9 2751 4816" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2043593..2045949) /locus_tag="TCM_027176" /note="dbxref CacaoGD:Thecc1EG027176" mRNA complement(join(2043593..2043905,2044024..2044159, 2044262..2044834,2044919..2045115,2045245..2045470, 2045549..2045949)) /locus_tag="TCM_027176" /product="Cc-nbs-lrr resistance protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027184t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s32030.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(join(2043880..2043905,2044024..2044159, 2044262..2044834,2044919..2045115,2045245..2045470, 2045549..2045854)) /locus_tag="TCM_027176" /note="paralog of Thecc1EG027184t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative" /protein_id="EOY25811.1" /db_xref="Phytozome:POPTR_0001s32030.1" /db_xref="TAIR:AT1G61180.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGA8" /translation="MICHDSSLKIAVSFSSLFIKNMGNLCSTSASAEPAVSHYWDCIA GQANYTWKLEENLIALSAALQELRSLNLDVKWRVEREKSQGGEVLDEVQLWLSKAETM NCRSSYKFGQQLAAKLEQIVDLKGERVFDKVAFNQPVSLIRPEPTVGLESTLFKIWSL LEGTEVGIIGLYGMGGIGLSSEYSWENKDPGEKALDTSTVLEGKKYVLLLDDLWELLD LSEIGIPLPTQENGSKVVFTTRSLEVGEETLNSDPLIRMLAKEVAAECGGLPLALITI GRAMAYKKSPHEWRYGLEVLRRSPHKFARLGEGPFPLLKFSYDSLPSNSVRSCLLYCS LYPQDYSISKATLIDYWYCEGLLDEFDSISSARMQGYNIIGVLVDACLLNEDGKKFVK MHDVIRDMTLRIVHQYEASENRFFVRAGVGLEAVPEVETWQGVIGDDFLQFMSTLRVL NLSDNRGLRKLPKGISKLVSLELLDLSRTGPTDKDCE" gene 2046716..2047339 /locus_tag="TCM_027177" /note="dbxref CacaoGD:Thecc1EG027177" mRNA 2046716..2047339 /locus_tag="TCM_027177" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage" CDS 2046866..2047147 /locus_tag="TCM_027177" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25812.1" /translation="MSKITTLYKLLFFIFNFLSFFKKNLTFFCHQIHSEQACSLLMEL PRSSRSLRKGPSLMLKIGLDLKLQIVPNLEFQITPGLALFGMDECQIWP" mobile_element complement(2047592..2049056) /note="source:scaffold_4_CACTA_0482 4494 5905" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2049333..2049404 /note="source:CACAO_M_S_E88793_F13_scaffold_7 5013 5081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2049386..2050105 /note="source:scaffold_9_CACTA_0937 5818 6198" /mobile_element_type="transposon:TIR/CACTA" gene complement(2050774..2053931) /locus_tag="TCM_027178" /note="dbxref CacaoGD:Thecc1EG027178" mRNA complement(join(2050774..2051769,2051869..2053931)) /locus_tag="TCM_027178" /product="Cc-nbs-lrr resistance-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027187t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s32030.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS complement(join(2051243..2051769,2051869..2053828)) /locus_tag="TCM_027178" /note="paralog of Thecc1EG027187t1" /codon_start=1 /product="Cc-nbs-lrr resistance-like protein" /protein_id="EOY25813.1" /db_xref="Phytozome:POPTR_0001s32030.1" /db_xref="TAIR:AT1G12220.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGA8" /translation="MTHNFIKSESTYRSKPPSDSSLLVNQTPHLIMGSLCTFQIGIDT IISDCRDCIVGQACYTCKLKRNHKALTRARENLEARKGDVNDSVARAEQQLIKPSNEV KLWLTRPEKTIEKAEKLIDRASGEIEKLRLAGCFSKDCKSSYKFGKQVARELKEIGVL LNEGYFDKIGEKEAASKVERRPSEPTVGLGSTLSLVRSSLEDNNVGIIGLYGLGGVGK TSLLTEINNMLCDPPIRYDVVIWVESSRSDTVQEKICEKIRPSDEPWKKKVGGEMAQD IYRILSQRKFVLLLDDVWKLVNLKDVGIPNPSPENGSKVVLTTRLSHVCRAMRAQRII EVKCLGEPEAWTLFQQKVTFTNSDPEVREVAKSVAAECGGLPLALDIIGRAMTGKTRR ESWDFAKKVLKNSAHKFVEIRKLYSVLSDSYETLLRDRMKSCFLYSSLFPEGSPILKS SLINYWFGEGLLDMFESINDALTHGHYVIEQLVSANLFQQDEKDDYVKLHDVIRDMAL WIACGREAAGKRFLVQAGLQLTEAPKVGNWKDMRRMSLMQNEIKNLSFIPRCPKIETL FLNSNDLQVIKGGFFQSIRNLRVLNLSDNRNLTRLPEGISELVSLECLDLSSTGLREL PIKLESLSKLKLLDLKNIKKMERIPQKLIRLIEELRRLQDLNMLSTHIGSISALERFL SSHNLRGCMVELWLHTLSESEELNVISLANMKLESLNVCNCEIMKEVIRIQIPTNTPR FDKLGTVEISFGHNLKDTTWLILAPNLKSLTVAFCQEMEKIMSKHKLSEVANVVGDLD SKQFDKLQILWLNTLPNWKAYAGKPYLSHV" mobile_element complement(2053924..2054216) /note="source:scaffold_1_CACTA_0009 13561 13835" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2054056..2054432) /note="source:CACAO_Mutator_E39_scaffold_1 3542 3915" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2054164..2057868 /note="source:CACAO_M_E33977_F20_scaffold_4 5407 9112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2057875..2058026 /note="source:scaffold_9_CACTA_0922 6889 7039" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2057883..2058042) /note="source:CACAO_Mutator_E1410_scaffold_6 5333 5496" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2058028..2059193) /note="source:CACAO_Mutator_E1888_scaffold_9 3845 4979" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2059181..2059245 /note="source:CACAO_Again_on_S_E95_scaffold_3 3780 3841" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(2059189..2059824) /note="source:CACAO_M_E50311_F328_scaffold_7 5820 6456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2060148..2060436) /note="source:CACAO_M_E50311_F328_scaffold_7 5573 5867" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2060517..2060706) /note="source:CACAO_M_E50311_F328_scaffold_7 5392 5579" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2060706..2061999) /note="source:CACAO_M_S_E16357_F328_scaffold_2 1 1290" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2062000..2064075) /note="source:CACAO_Mutator_E1410_scaffold_6 1849 3936" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2063550..2066329 /note="source:scaffold_9_CACTA_0922 4915 7647" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2065582..2067671 /note="source:CACAO_M_E33977_F20_scaffold_4 14822 16542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2070905..2071110) /note="source:scaffold_1_CACTA_0028 11292 11499" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2070928..2073311 /note="source:scaffold_9_CACTA_0937 1399 3746" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2077094..2081910) /note="source:INTACT238_F180_scaffold_3-int 1 4814" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2084488..2086049) /note="source:CACAO_on_S_E176_scaffold_5 12 1570" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2084491..2086226) /note="source:scaffold_1_CACTA_0009 4650 6386" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2086777..2087772 /note="source:CACAO_M_E33977_F20_scaffold_4 15618 16583" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2088682..2093681) /locus_tag="TCM_027184" /note="dbxref CacaoGD:Thecc1EG027184" mRNA complement(join(2088682..2088900,2089012..2089123, 2089308..2089392,2090276..2093681)) /locus_tag="TCM_027184" /product="Cc-nbs-lrr resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017026001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027187t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s32030.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.21 coverage" gene complement(2088707..2116408) /locus_tag="TCM_027185" /note="dbxref CacaoGD:Thecc1EG027185" mRNA complement(join(2088707..2088795,2114204..2114886, 2115744..2116408)) /locus_tag="TCM_027185" /product="Disease resistance protein family, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017026001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027184t1" /inference="similar to AA sequence:ricco:29841.m002832" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc2109t3" CDS complement(2090327..2093113) /locus_tag="TCM_027184" /note="paralog of Thecc1EG027187t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative" /protein_id="EOY25814.1" /db_xref="Phytozome:POPTR_0001s32030.1" /db_xref="TAIR:AT1G12280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGA8" /translation="MGNLCSIQISTDHTVSRCWDCIVGRANYTCKLEKNLRALRVAVE ELKALRDDVNRRVHCAEQQLMIKRLSQVQVWLSRAETMIMESEELIRDASTEKEKLCL AGCFSKNCKSSYKFGRQVAKKLKQVVELKSKGVFDKVAENEPTGPVDVRPIEPTVGLE STLAKVWSLLQDKQVGMIGLYGLGGVGKTTLLTQVNNKLSGNPLDFDVVIWVVVSKDH TVETVQEKIGKRVGLFNGWMQNKSSDEKAVDIFRILSKRKFVLFLDDVWERVHLTKIG IPLPSQENGSKVVFTTRFLEICNEMEAQKVEVECLRANEAWELFREKVGEETLHSHPD IPGLAQKMAAKCGGLPLSLITIGRAMASKKTPQAWEYAIEVLKKSAHKLARMGQEVYP LLKFSYDSLHCDTMRSCLLYCGLYPEDVLILKSELIEYWFCEGLLDEFDSVRRARLQG YNIIDSLVNSCLLEEDGEYYVKMHDVIRDMTLWIAGESEAPEKSFFVQAGLQLTETPD VGKWENVRRLSLAGNKIKDLTSTPTCPNLETLLLNYNELEVISDGFFKLMPNLRVLNL AGNRGLRQLPEGISELVSLECLNLSRTGLRELSIKLKSLTKLRYLDLRYTDDLRRIPG KLISSFPKLQIFRMFRSGGGYSQEEMAADNEDGIVELGCLPHLNGGINDFHNPYETDG DNLLNDGNEGLIEELGCLQSLNTLSIHIMSASALERFLSFPNLPGCTQELSLCAFKES KSLNVLSLANMQCLERLDISECARLEEMKIEKEGEGRMIQASLFRTLREVTIFECGNL RDMTWIILVPNLRFLWVVNCLKMEEIMSKEKMSEAADLVRSLNPNPFAKLQNLTLQFL PELKSIHWDVLPFPCLTEIFVRECPKLRELPLSSDSAKGNPICIQGEKEWWETLEWKN KATQNAFLPFFEPH" mobile_element 2094061..2097997 /note="source:INTACT803_F10_scaffold_6-int 1 3937" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(2098665..2107671) /locus_tag="TCM_027187" /note="dbxref CacaoGD:Thecc1EG027187" mRNA complement(join(2098665..2102193,2107500..2107671)) /locus_tag="TCM_027187" /product="Cc-nbs-lrr resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017026001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027184t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s32030.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g631t1" CDS complement(2099273..2101978) /locus_tag="TCM_027187" /note="paralog of Thecc1EG027184t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative" /protein_id="EOY25816.1" /db_xref="Phytozome:POPTR_0001s32030.1" /db_xref="TAIR:AT5G63020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGA8" /translation="MGNLCSISISMEDTVSRCWDCIVRQASYMCKLEENHKALSLSLE ELRAQRDDVNRRVDCAELQLLKRLSQVQVWLSRAETMITEVEELIKDIPQETQKLCHA CCFSKNFKSSYKLGQQVARKLEEMDDLKKKGVFDKVAENQPVAPMDVRPIESTVGLES TLLEVWSLLQEKDVGIIGLYGLGGVCKTSLLAQINNKFCSMPVGYDIVIWLVVSKDHT VSKIQEKIAEKIGLSNDMWKMKSCDGKARDIFTVLNKKKFVLFLDDLWERVDLIKVGI PLPSLENGSKLVFTTRHLEVCGKMEAQKKIKVECLGADESWKLFQDKVGEETLDSHPD IRKLAKMVAAECGGLPLALITIGRAMACKKIPEAWEYAIEVLKQSAHRFAGMEEEVFS LLIFSYDSLPSDTMRSCLLYFSLYPEDHVINKRNLIEYWFCEGLLDEFDSMRKALLQG YNIIDSLLNACLLEQAGEDYVRMHDVIRDMCLWIACEREAVEKRFFVQVGHQLGEAPD VGKWEGVRRMSLMRNQIVNLRSTPTCPNLRTLFLNKNTLKVISEGFFKLMPNLRVLNL SDNTDLRELPEGISELVSLEYLNLSGTGIEELPVKLKSLTKFKCLDLSSTENLKRIPQ QLISSFSILQVYRMVGSGVYYQDGMIEGNVLNGGNAGLIEELKCLQHLNMLSIEIKSA FALETFLTSRNLQGCAEELVLRNFPESKVLDVLSLANMERLEFLHVANCDNMEEMKIT RDFGEMRMAQTNTPFNSLGRVFIERCRRLRDVTWLTFAPNLTMLSVHCCPKMEEIMSE RKLNETENVVGIPYPNRFAKLKELHLRHLPQLKSICSDALPFPCLTDISVFKCSKLKK LPLSFDPERNKISIQGTLSWWKELEWEDETARNKCLFVDSSLGLW" CDS complement(2115795..2116331) /locus_tag="TCM_027185" /note="dbxref ricco:29841.m002832; paralog of Thecc1EG027184t1" /codon_start=1 /product="Disease resistance protein family, putative" /protein_id="EOY25815.1" /db_xref="TAIR:AT4G10780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B0D1" /translation="MQCLERLDISECARLEEMKIEKEGGGRMIQASLFPTLREVTIFE CGNLRDMTWIILVPNLRFLWVVSCPKMDEIMSKEKMSEAADLVKSLNPNPFAKLQNLT LQFLPELKSIHWDVLPFPCLTEIFVRECPKLRELPLSSDGAKGNQICIQGEKEWWETL EWKNKATQNAFLPFFEPH" mobile_element complement(2118773..2119848) /note="source:INTACT897F_F376_scaffold_6-int 765 1843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2120495..2121529 /note="source:CACAO_on_SS_E42_scaffold_2 21141 22132" /mobile_element_type="transposon:TIR/Mutator" gene 2121016..2137457 /locus_tag="TCM_027189" /note="dbxref CacaoGD:Thecc1EG027189" mRNA join(2121016..2121214,2124470..2124941,2125161..2125264, 2130431..2131352,2131651..2132186,2134133..2135349, 2137143..2137457) /locus_tag="TCM_027189" /product="Non-LTR retroelement reverse transcriptase" /inference="alignment:exonerate-protein:2:frave:gene04278" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027217t1" /inference="similar to AA sequence:frave:gene28626" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element complement(2122236..2122421) /note="source:INTACT446_F218_scaffold_9-int 7171 7350" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 2125426..2130371 /note="source:INTACT893F_F67_scaffold_6-int 1 4946" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(2130540..2131352,2131651..2132186,2134133..2135349, 2137143..2137201) /locus_tag="TCM_027189" /note="dbxref frave:gene28626; paralog of Thecc1EG027217t1" /codon_start=1 /product="Non-LTR retroelement reverse transcriptase" /protein_id="EOY25817.1" /db_xref="TAIR:AT5G42905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2HVE2" /translation="MLVSRRKNRFKEGRQYPTWEKNSGKNRTQGSHFSLLEDKEEEVV ALDQSIISERQSSKQNFAGKEKIESFNKKVHIADQLRNTSQRTEDNAGQAYGGKGNCV AIQEDNGQFRKALEGEAIVRESLLKDVLTGKQISPLVPNGNEADSKDVSRIRDIPSHW SIPDPNKHTIVTMVVKIVDGGLPTRKLMTRNSRVDGVAIHEKDPKATNKKILTRLQGM SIKKWARAKPITATMHSNAMSSLLNDSGLNLAPVDALVETIYQPVAANDLEKPEAVKI HMIGNHAQCIHLIVEHPVGNSWYLSAVYGHPNPSIRYSLWEELTRFARTVSKPWLIAR DFNSFLFSHEKSGGSAKGSQPCSHFQKLVNVFELMDLGFKGPKFTWRRGLVSERIDRV VCNMQWRLAFSDAVVHHLPRVGSNHRPLLISTKDAKVENMTQSFRFQAAWLFHEGCDE CSNVWKSMSRLWGEFTKHVRWSIGDGALVNFWIDTWVGEVPLINVVVDMGFMLNLRAR VRDYIMPNGDWDKERLTSILPIEVVNQILYIIPPTLSASLDMPYWALSPSGYFTISST YEHLGSLADSTREENNKMWHLVWDWKGPHRVCLFLFFCLHKRILTNAERVRRKMSSDA SCPHCYGVEETCLHVLRDCLASETLWRRILPESGINQFFQIPLIDWLSSNLNLKNLYV FDVPWNIVFGTTCWYTWKRSNLFIFEGRELSVEGRLNIIRSMAVDSHNTWSTYRIISG GMRHQEKILVGWSPPPEDWITVNLDGAFKSAARTTAAGGVLRDAHGTWIVGYACKLET SSVFRAELWGVYKGLQLAWERGFRKVKLQSDNKAVVQAISFSSVHPCSNLDLIRAIKG PCLLTESDSQIVLSWAEK" mobile_element 2136271..2137041 /note="source:CACAO_Again_on_E63_scaffold_2 1 1474" /mobile_element_type="transposon:TIR/hAT" gene complement(2138975..2140457) /locus_tag="TCM_027191" /note="dbxref CacaoGD:Thecc1EG027191" mRNA complement(join(2138975..2139878,2140295..2140457)) /locus_tag="TCM_027191" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.13 coverage" CDS complement(join(2139740..2139878,2140295..2140371)) /locus_tag="TCM_027191" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25818.1" /translation="MIFVYMESSLSLASEQKLTCSVPDLRIRFKKSREDIVVLTSEGA LDKVAESEPGCQVHVRPIGPIIGLEST" gene complement(2142660..2144415) /locus_tag="TCM_027192" /note="dbxref CacaoGD:Thecc1EG027192" mRNA complement(join(2142660..2142932,2143025..2143097, 2143340..2143483,2143714..2143844,2144149..2144415)) /locus_tag="TCM_027192" /product="Histidine-containing phosphotransfer protein 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017338001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004489t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s02690.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12709t00001" CDS complement(join(2142879..2142932,2143025..2143097, 2143340..2143483,2143714..2143844,2144149..2144217)) /locus_tag="TCM_027192" /note="paralog of Thecc1EG004489t1" /codon_start=1 /product="Histidine-containing phosphotransfer protein 6" /protein_id="EOY25819.1" /db_xref="Phytozome:POPTR_0003s02690.1" /db_xref="TAIR:AT1G80100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSC9" /translation="MLGLGADRLRADMNRLLAFLFHQGILDEQYLQLQQLQDESSPNF VSEVVNIYFHESEKLLRNLRSLLMDREFSDYKKMGIHLNQFMGSSSSIGAKRVRNVCV AFRAASEQNNRAGCLRALELLEHEYCFLKNKLHELFQIEQQRVLAAGVRYPMQN" mobile_element complement(2147369..2147410) /note="source:CACAO_M_E42514_F40_scaffold_5 140 181" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(2148284..2235028) /locus_tag="TCM_027193" /note="dbxref CacaoGD:Thecc1EG027193" mRNA complement(join(2148284..2149147,2149243..2149349, 2150070..2150448,2150540..2151342)) /locus_tag="TCM_027193" /product="Fatty acid desaturase 5 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017339001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027198t1" /inference="similar to AA sequence:ricco:29841.m002863" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:PASA:2:TSA:puevd3b026302t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g03255t00001" mRNA complement(join(2148284..2149147,2149243..2149349, 2150070..2150210,2150308..2150448,2150540..2151134)) /locus_tag="TCM_027193" /product="Fatty acid desaturase 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017339001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027198t1" /inference="similar to AA sequence:ricco:29841.m002863" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03255t00001" CDS complement(join(2148949..2149147,2149243..2149349, 2150070..2150210,2150308..2150448,2150540..2151112)) /locus_tag="TCM_027193" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29841.m002863; paralog of Thecc1EG027198t1" /codon_start=1 /product="Fatty acid desaturase 5 isoform 1" /protein_id="EOY25820.1" /db_xref="TAIR:AT3G15850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949X0" /translation="MALITSLLSKPKSLAVSPPQRATTIKTRSCSCKVLNFGHQNPKF NQINGEQSPLQASFITRLNRSYSNRKVLALANGVSVGANEPDPEGKTSGRILLSNVVV QRKKEVFWGRKWNTLDMATAGVVVGMHLLSLFAPFHFNWPAFWLAVGLYGVTGLLGIT LSFHRNLSHRSFKVPKWLEYFFAYCGVQALQGNPIDWVSTHRYHHQFCDSDRDPHSPI EGFWFSHMSWLFDTDTVVERCGEPTNVGDLRQQPFYKFLQGTYILHPIALGVLLYALG GFPFLVWGMGVRIVWVYHITWLVNSACHVWGKQAWNTGDLSRNNWWVALLAFGEGWHN NHHAFEYSARHGLEWWQLDMTWCVIKFLQVIGQATEVKLPTEVQKKRMAFSS" mRNA complement(join(<2149041..2149147,2149243..2149349, 2150070..2150210,2150308..2150448,2150540..2151477, 2151645..2151719,2234804..2235028)) /locus_tag="TCM_027193" /product="Fatty acid desaturase 5 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017339001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027198t1" /inference="similar to AA sequence:ricco:29841.m002863" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is medium, protein is partial3; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc154t58_C1; inference alignment:Newbler:10:TSA:cgbaP1_g03255t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc212t29_C1" CDS complement(join(<2149042..2149147,2149243..2149349, 2150070..2150210,2150308..2150448,2150540..2151112)) /locus_tag="TCM_027193" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29841.m002863; paralog of Thecc1EG027198t1" /codon_start=1 /product="Fatty acid desaturase 5 isoform 2" /protein_id="EOY25821.1" /db_xref="TAIR:AT3G15850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949X0" /translation="MALITSLLSKPKSLAVSPPQRATTIKTRSCSCKVLNFGHQNPKF NQINGEQSPLQASFITRLNRSYSNRKVLALANGVSVGANEPDPEGKTSGRILLSNVVV QRKKEVFWGRKWNTLDMATAGVVVGMHLLSLFAPFHFNWPAFWLAVGLYGVTGLLGIT LSFHRNLSHRSFKVPKWLEYFFAYCGVQALQGNPIDWVSTHRYHHQFCDSDRDPHSPI EGFWFSHMSWLFDTDTVVERCGEPTNVGDLRQQPFYKFLQGTYILHPIALGVLLYALG GFPFLVWGMGVRIVWVYHITWLVNSACHVWGKQAWNTGDLSRNNWWVALLAFGEGWHN NHHAFEYSARHGLEWWQLDMTW" CDS complement(join(2149261..2149349,2150070..2150448, 2150540..2151112)) /locus_tag="TCM_027193" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29841.m002863; paralog of Thecc1EG027198t1" /codon_start=1 /product="Fatty acid desaturase 5 isoform 3" /protein_id="EOY25822.1" /db_xref="TAIR:AT3G15850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6T323" /translation="MALITSLLSKPKSLAVSPPQRATTIKTRSCSCKVLNFGHQNPKF NQINGEQSPLQASFITRLNRSYSNRKVLALANGVSVGANEPDPEGKTSGRILLSNVVV QRKKEVFWGRKWNTLDMATAGVVVGMHLLSLFAPFHFNWPAFWLAVGLYGVTGLLGIT LSFHRNLSHRSFKVPKWLEYFFAYCGVQALQGNPIDWVSTHRYHHQFCDSDRDPHSPI EGFWFSHMSWLFDTDTVVERVTLSLSFSNMQALTYAQNELIFLMFCINGTFAVWRTNQ CWGSTAAALLQVSSGYLHSSSNCTWSFAICSRRVSLPCLGNGCEDCMGLPHHLAGKFS MPCVGEASMEYW" gene 2151399..2158679 /locus_tag="TCM_027194" /note="dbxref CacaoGD:Thecc1EG027194" mRNA join(2151399..2151477,2151645..2151798,2155729..2155858, 2156136..2156220,2156336..2156414,2157077..2157190, 2157272..2157384,2157789..2157899,2158015..2158317) /locus_tag="TCM_027194" /product="Post-illumination chlorophyll fluorescence increase isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G15840.4" /inference="similar to AA sequence:ricco:29841.m002864" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15540t2" mRNA join(2151593..2151765,2155729..2155858,2156136..2156220, 2156336..2156414,2157077..2157190,2157272..2157384, 2157789..2157899,2158015..2158679) /locus_tag="TCM_027194" /product="Post-illumination chlorophyll fluorescence increase isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT3G15840.4" /inference="similar to AA sequence:ricco:29841.m002864" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:PASA:2:TSA:puevd3b026303t1a3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15540t2" mRNA join(2151593..2151765,2155729..2155858,2156136..2156220, 2156336..2156414,2157077..2157190,2157272..2157384, 2158015..2158679) /locus_tag="TCM_027194" /product="Post-illumination chlorophyll fluorescence increase isoform 5" /inference="alignment:exonerate- protein:2:TAIR:AT3G15840.4" /inference="similar to AA sequence:ricco:29841.m002864" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:PASA:2:TSA:puevd3b026303t1a4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15540t2" mRNA join(2151612..2151765,2155729..2155858,2156109..2156220, 2156336..2156414,2157077..2157190,2157272..2157384, 2157789..2157899,2158015..2158618) /locus_tag="TCM_027194" /product="Post-illumination chlorophyll fluorescence increase isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT3G15840.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027202t1" /inference="similar to AA sequence:ricco:29841.m002864" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:PASA:2:TSA:puevd3b026303t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g00380t00002" mRNA join(2151612..2151765,2155729..2155858,2156136..2156220, 2156336..2156414,2157077..2157190,2157272..2157384, 2157789..2158618) /locus_tag="TCM_027194" /product="Post-illumination chlorophyll fluorescence increase isoform 4" /inference="alignment:exonerate- protein:2:TAIR:AT3G15840.4" /inference="similar to AA sequence:ricco:29841.m002864" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:PASA:2:TSA:puevd3b026303t1a5; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15540t2" CDS join(2151699..2151798,2155729..2155858,2156136..2156220, 2156336..2156414,2157077..2157190,2157272..2157384, 2157789..2157899,2158015..2158134) /locus_tag="TCM_027194" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29841.m002864" /codon_start=1 /product="Post-illumination chlorophyll fluorescence increase isoform 1" /protein_id="EOY25823.1" /db_xref="TAIR:AT3G15840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B7FK63" /translation="MAATASIFTSPTQPFSATRSVRGTSAKPSISKPNAASSFMGASL PRDFAKTKRLVKISVKVTAAATVTKNPMEQIKEYALPSWAMFELGRAPVYWKTMNGLP PTSGKKVKLFYNPAATKLVPNEEYGIAFNGGFNQPIMCGGEPRAMLRKSRGKADSPIY TIQICVPKHAVNLIFSFTNGANWDGPYRLQFQVPKAWQNRAIEFFNQGLAEELSQEGA CDRAIFPDTNIVVDGCVMIGNLSKEGGDRCSLDLVPGCMDPNSYLYNPLANVDDGSCL IDSDSED" CDS join(2151699..2151765,2155729..2155858,2156136..2156220, 2156336..2156414,2157077..2157190,2157272..2157384, 2157789..2157899,2158015..2158134) /locus_tag="TCM_027194" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29841.m002864" /codon_start=1 /product="Post-illumination chlorophyll fluorescence increase isoform 3" /protein_id="EOY25825.1" /db_xref="TAIR:AT3G15840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B7FK63" /translation="MAATASIFTSPTQPFSATRSVRDAASSFMGASLPRDFAKTKRLV KISVKVTAAATVTKNPMEQIKEYALPSWAMFELGRAPVYWKTMNGLPPTSGKKVKLFY NPAATKLVPNEEYGIAFNGGFNQPIMCGGEPRAMLRKSRGKADSPIYTIQICVPKHAV NLIFSFTNGANWDGPYRLQFQVPKAWQNRAIEFFNQGLAEELSQEGACDRAIFPDTNI VVDGCVMIGNLSKEGGDRCSLDLVPGCMDPNSYLYNPLANVDDGSCLIDSDSED" CDS join(2151699..2151765,2155729..2155858,2156136..2156220, 2156336..2156414,2157077..2157190,2157272..2157384, 2158015..2158134) /locus_tag="TCM_027194" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29841.m002864" /codon_start=1 /product="Post-illumination chlorophyll fluorescence increase isoform 5" /protein_id="EOY25827.1" /db_xref="TAIR:AT3G15840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B7FK63" /translation="MAATASIFTSPTQPFSATRSVRDAASSFMGASLPRDFAKTKRLV KISVKVTAAATVTKNPMEQIKEYALPSWAMFELGRAPVYWKTMNGLPPTSGKKVKLFY NPAATKLVPNEEYGIAFNGGFNQPIMCGGEPRAMLRKSRGKADSPIYTIQICVPKHAV NLIFSFTNGANWDGPYRLQFQVPKAWQNRAIEFFNQGDRCSLDLVPGCMDPNSYLYNP LANVDDGSCLIDSDSED" CDS join(2151699..2151765,2155729..2155858,2156136..2156220, 2156336..2156414,2157077..2157190,2157272..2157384, 2157789..2157971) /locus_tag="TCM_027194" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29841.m002864" /codon_start=1 /product="Post-illumination chlorophyll fluorescence increase isoform 4" /protein_id="EOY25826.1" /db_xref="TAIR:AT3G15840.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B7FK63" /translation="MAATASIFTSPTQPFSATRSVRDAASSFMGASLPRDFAKTKRLV KISVKVTAAATVTKNPMEQIKEYALPSWAMFELGRAPVYWKTMNGLPPTSGKKVKLFY NPAATKLVPNEEYGIAFNGGFNQPIMCGGEPRAMLRKSRGKADSPIYTIQICVPKHAV NLIFSFTNGANWDGPYRLQFQVPKAWQNRAIEFFNQGLAEELSQEGACDRAIFPDTNI VVDGCVMIGNLSKEGVNKLLICFLLYSTSSFRYSASNC" mobile_element complement(2155215..2155451) /note="source:CACAO_M_E69460_F12_scaffold_9 4683 4930" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA join(2156136..2156220,2156336..2156414,2157077..2157190, 2157272..2157384,2157789..2157903,2158007..2158273) /locus_tag="TCM_027194" /product="Post-illumination chlorophyll fluorescence increase isoform 6" /inference="alignment:exonerate- protein:2:TAIR:AT3G15840.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027202t1" /inference="similar to AA sequence:ricco:29841.m002864" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc212t31_G2; inference alignment:Newbler:10:TSA:cgbaP2_g00380t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15540t2" CDS join(2156158..2156220,2156336..2156414,2157077..2157190, 2157272..2157384,2157789..2157903,2158007..2158134) /locus_tag="TCM_027194" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29841.m002864; paralog of Thecc1EG027202t1" /codon_start=1 /product="Post-illumination chlorophyll fluorescence increase isoform 6" /protein_id="EOY25828.1" /db_xref="TAIR:AT3G15840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B7FK63" /translation="MFELGRAPVYWKTMNGLPPTSGKKVKLFYNPAATKLVPNEEYGI AFNGGFNQPIMCGGEPRAMLRKSRGKADSPIYTIQICVPKHAVNLIFSFTNGANWDGP YRLQFQVPKAWQNRAIEFFNQGLAEELSQEGACDRAIFPDTNIVVDGCVMIGNLSKEG VILQGDRCSLDLVPGCMDPNSYLYNPLANVDDGSCLIDSDSED" CDS join(2156158..2156220,2156336..2156414,2157077..2157190, 2157272..2157384,2157789..2157899,2158015..2158134) /locus_tag="TCM_027194" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29841.m002864; paralog of Thecc1EG027202t1" /codon_start=1 /product="Post-illumination chlorophyll fluorescence increase isoform 2" /protein_id="EOY25824.1" /db_xref="TAIR:AT3G15840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B7FK63" /translation="MFELGRAPVYWKTMNGLPPTSGKKVKLFYNPAATKLVPNEEYGI AFNGGFNQPIMCGGEPRAMLRKSRGKADSPIYTIQICVPKHAVNLIFSFTNGANWDGP YRLQFQVPKAWQNRAIEFFNQGLAEELSQEGACDRAIFPDTNIVVDGCVMIGNLSKEG GDRCSLDLVPGCMDPNSYLYNPLANVDDGSCLIDSDSED" gene complement(2159516..2162090) /locus_tag="TCM_027195" /note="dbxref CacaoGD:Thecc1EG027195" mRNA complement(join(2159516..2159867,2160095..2160222, 2161647..2162090)) /locus_tag="TCM_027195" /product="Phosphatidic acid phosphatase-related / PAP2-related, putative" /inference="alignment:exonerate- protein:2:ricco:29841.m002865" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027203t1" /inference="similar to AA sequence:Phytozome:Glyma07g03350.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.15 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc154t60" CDS complement(join(2159550..2159867,2160095..2160222, 2161647..2161863)) /locus_tag="TCM_027195" /note="paralog of Thecc1EG027203t1" /codon_start=1 /product="Phosphatidic acid phosphatase-related / PAP2-related, putative" /protein_id="EOY25829.1" /db_xref="Phytozome:Glyma07g03350.1" /db_xref="TAIR:AT3G15820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVZ7" /translation="MTMACHQLLTLEYHSFPPWRVTNSELWHVTDSLHGLSRTLNAGM SQIPSIACHQLLTLACHRFPPWRLTNSKRVQTVYILWTWLIECRRRATISALFMFTCR GILGYSTQLPLPQEFVGSGVDFPVGNVSFFLFFSGHVAGSVIASFEMRRMRRWELAWL FDTLNVLQAVRLLGTRGCYTIDLAVGVGAGILFDSLAGKYEDSKRKCPLVSGTMKEGL LR" mobile_element complement(2160943..2164310) /note="source:CACAO_M_E33977_F20_scaffold_4 13267 16551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2164308..2166857 /note="source:INTACT501_F232_scaffold_3-int 492 3044" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2166960..2168878 /note="source:INTACT501_F232_scaffold_3-int 3050 5014" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2170704..2171103 /note="source:CACAO_M_E12297_F14_scaffold_3 6345 6723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2171667..2172607 /note="source:CACAO_M_E12297_F14_scaffold_3 7309 8250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2173557..2173677 /note="source:CACAO_M_E44599_F33_scaffold_6 1916 2021" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2173559..2173744) /note="source:CACAO_M_S_E83372_F14_scaffold_6 5974 6131" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2176749..2179618) /locus_tag="TCM_027198" /note="dbxref CacaoGD:Thecc1EG027198" mRNA complement(join(2176749..2177434,2177530..2177636, 2178357..2178497,2178595..2178735,2178827..2179618)) /locus_tag="TCM_027198" /product="Fatty acid desaturase 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017339001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046188t1" /inference="similar to AA sequence:ricco:29841.m002863" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS complement(join(2177236..2177434,2177530..2177636, 2178357..2178497,2178595..2178735,2178827..2179399)) /locus_tag="TCM_027198" /note="dbxref ricco:29841.m002863; paralog of Thecc1EG046188t1" /codon_start=1 /product="Fatty acid desaturase 5" /protein_id="EOY25830.1" /db_xref="TAIR:AT3G15850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949X0" /translation="MAFVTSLLSKPKYLDVSPPQRATTMKTRSCSCKVLNFGHQNPKF NQINGEQSPLHASFITRLNRSYSNRKVLALANGVSVEANEPDPEGKISGRILLSNVVV QRKKKAFWGRKWNTSDMAIAGVIVSMHLLSLFAPFHFNWPAFWLAVGLYVVTGLLGIT LSFHRNLSHRSFKVPKWLEYFFAYCGVQALQGNPISWVSTHRYHHQFCDSNRDPHSPI EGFWFSHMSWLFDTNTVIEKCGEPTNVGDLRQQPFYKFLEGTYILHPIALGVLLYALG GFPFIVWGMGVRIVWLYHITWLVNSACHVWGKQAWNTGDLSRNNWWMALLSFGEGWHN NHHAFKYSARHGLEWWQLDMTWCVIKFLQVIGLATEVKLPTEVQKKRMAFSS" mobile_element complement(2181175..2181259) /note="source:CACAO_M_E50969_F33_scaffold_7 7974 8063" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2184264..2184368 /note="source:CACAO_M_E58440_F42_scaffold_9 10051 10138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2186571..2187984 /note="source:CACAO_M_E59271_F15_scaffold_9 1 1426" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2187985..2189348) /note="source:CACAO_M_S_E2040_F42_scaffold_1 1751 3117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2189450..2190387 /note="source:CACAO_M_E44087_F42_scaffold_5 1384 2321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2190488..2191265 /note="source:CACAO_M_E53124_F42_scaffold_8 2338 3113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2198743..2199178 /note="source:CACAO_M_E44769_F15_scaffold_6 649 1083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2199279..2199564 /note="source:CACAO_M_E12376_F15_scaffold_3 1124 1409" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2204038..2204136 /note="source:CACAO_M_E44265_F33_scaffold_5 6518 6616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2204048..2204196) /note="source:CACAO_M_E49857_F85_scaffold_7 9856 10004" /mobile_element_type="retrotransposon:LTR/Gypsy" assembly_gap 2204197..2214196 /estimated_length=10000 /gap_type="between scaffolds" mobile_element complement(2214316..2214411) /note="source:INTACT135_F42_scaffold_4-int 8034 8129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2217674..2218320 /note="source:INTACT669_F295_scaffold_3-int 8900 9448" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2217905..2218316) /note="source:CACAO_M_E35811_F12_scaffold_5 14716 15129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2218313..2218574) /note="source:CACAO_M_E53388_F15_scaffold_8 3277 3538" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2218574..2220159 /note="source:CACAO_M_E58924_F15_scaffold_9 1421 3004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2220260..2220443) /note="source:INTACT646F_F95_scaffold_5-int 12255 12438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2220546..2221848 /note="source:CACAO_M_E49857_F85_scaffold_7 10171 11472" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2225781..2234604) /locus_tag="TCM_027201" /note="dbxref CacaoGD:Thecc1EG027201" mRNA complement(join(2225781..2226556,2226940..2227025, 2232186..2232290,2232385..2232491,2233362..2233502, 2233600..2233740,2234360..2234604)) /locus_tag="TCM_027201" /product="Fatty acid desaturase 5" /inference="alignment:exonerate- protein:2:frave:gene15599.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027193t1" /inference="similar to AA sequence:ricco:29841.m002863" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g678t2" CDS complement(join(2226453..2226556,2226940..2227025, 2232186..2232290,2232385..2232491,2233362..2233502, 2233600..2233740,2234360..2234404)) /locus_tag="TCM_027201" /note="dbxref ricco:29841.m002863; paralog of Thecc1EG027193t1" /codon_start=1 /product="Fatty acid desaturase 5" /protein_id="EOY25831.1" /db_xref="TAIR:AT3G15850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949X0" /translation="MALITSLLSKPKSLAGNPIDWVSTHRYHHQFCDSDRDPHSPIEG FWFSHMSWLFDTDTVVERCGEPTNVGDLRQQPFYKFLQGTYILHPIALGVLLYALGGF PFLVWGMGVRIVWVYHITWLVNSACHVWGKQAWNTGDLSRNNWWVALLAFGEGWHNNH HAFEYSARHGLEWWQLDMTWKRAFRKRQRSCTRRVVIEALRKLLVCTNEGHGKPSYIV TPIVEARRVTPGVVLELTSHRTPT" mobile_element complement(2227829..2227887) /note="source:INTACT135_F42_scaffold_4-int 10831 10893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2228136..2228554) /note="source:CACAO_M_S_E86542_F15_scaffold_7 1 419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2228371..2228577 /note="source:INTACT454F_F360_scaffold_4-int 3 201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2228598..2229614 /note="source:INTACT257_F186_scaffold_6-int 17455 18441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2230425..2230522 /note="source:INTACT257_F186_scaffold_6-int 1778 1883" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2235009..2238145 /locus_tag="TCM_027202" /note="dbxref CacaoGD:Thecc1EG027202" mRNA join(2235009..2235121,2237136..2237249,2237331..2237443, 2237821..2238145) /locus_tag="TCM_027202" /product="Post-illumination chlorophyll fluorescence increase" /inference="alignment:exonerate- protein:2:TAIR:AT3G15840.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027194t4" /inference="similar to AA sequence:ricco:29841.m002864" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g660t1" CDS join(2235055..2235121,2237136..2237249,2237331..2237443, 2237821..2237883) /locus_tag="TCM_027202" /note="dbxref ricco:29841.m002864; paralog of Thecc1EG027194t4" /codon_start=1 /product="Post-illumination chlorophyll fluorescence increase" /protein_id="EOY25832.1" /db_xref="TAIR:AT3G15840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B7FK63" /translation="MAATASIFTSPTQPFSATRSVRGGFNQPIMCGGEPRAMLRKSRG KADSPIYTIQICVPKHAVNLIFSFTNGANWDGPYRLQFQVPKAWQNRPIEFFNQGIFP AGAFSRNSDLKLHVFI" mobile_element complement(2236579..2236710) /note="source:CACAO_M_E86052_F15_scaffold_12 6017 6151" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2238814..2240527) /locus_tag="TCM_027203" /note="dbxref CacaoGD:Thecc1EG027203" mRNA complement(join(2238814..2239444,2239668..2239805, 2239901..2240527)) /locus_tag="TCM_027203" /product="Phosphatidic acid phosphatase-related protein" /inference="alignment:exonerate- protein:2:ricco:29841.m002865.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027195t1" /inference="similar to AA sequence:ricco:29841.m002865" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11199t00001" CDS complement(join(2239127..2239444,2239668..2239805, 2239901..2240314)) /locus_tag="TCM_027203" /note="dbxref ricco:29841.m002865; paralog of Thecc1EG027195t1" /codon_start=1 /product="Phosphatidic acid phosphatase-related protein" /protein_id="EOY25833.1" /db_xref="TAIR:AT3G15820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVZ7" /translation="MNAAAAAATTTALLSFPYKRSTKVNGQTNDVDVVAANNKMGVHG NGGGNHNVFNGGVHYGKASFLKWTLDDVVYVARYHWIPCGFAAGLLFFMYVEYTLRMV PDSSPPFDLGFVITRSFHRALSSWPELNTLLAALNTVFVGMQTVYILWTWLIEGRPRA TISALFMFTCRGILGYSTQLPLPQEFVGSGVDFPVGNVSFFLFFSGHVAGSVIASLDM RRMRRWELAWLFDTLNVLQAVRLLGTRGHYTIDLAVGVGAGILFDSLAGKYEDSKRKC ALVSGTMKEGLLS" gene complement(2244627..2245484) /locus_tag="TCM_027204" /note="dbxref CacaoGD:Thecc1EG027204" mRNA complement(2244627..2245484) /locus_tag="TCM_027204" /product="Pathogenesis-related protein PR-4B" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026340t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03900.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06821t00001" CDS complement(2244880..2245479) /locus_tag="TCM_027204" /note="paralog of Thecc1EG026340t1" /codon_start=1 /product="Pathogenesis-related protein PR-4B" /protein_id="EOY25834.1" /db_xref="Phytozome:POPTR_0013s03900.1" /db_xref="TAIR:AT3G04720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P43082" /translation="MKNTQKMGNLSLCLVFLVSLLASTATAQQCGRQAAGRTCANNLC CSQFGYCGTTNEYCSPSKSCQSNCWPSGGGGGGESASNVRATYHFYNPPQNGWDLNAV SAYCSTWDANKPLAWRQKYGWTAFCGPVGPRGQASCGRCLRVTNRGTRAEAIVRIVDQ CSNGGLDLDAAVFQQIDTDGRGYAQGHLMVDYQFVNCGD" gene complement(2247753..2250601) /locus_tag="TCM_047057" /note="dbxref CacaoGD:Thecc1EG047057" mRNA complement(join(2247753..2248249,2248612..2248963, 2250135..2250601)) /locus_tag="TCM_047057" /product="Cystathionine beta-synthase (CBS) protein, putative" /inference="alignment:exonerate- protein:2:ricco:29841.m002869" /inference="similar to AA sequence:ricco:29841.m002869" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00229t00001" CDS complement(join(2247911..2248249,2248612..2248963, 2250135..2250556)) /locus_tag="TCM_047057" /note="dbxref ricco:29841.m002869" /codon_start=1 /product="Cystathionine beta-synthase (CBS) protein, putative" /protein_id="EOY25835.1" /db_xref="TAIR:AT1G15330.1" /translation="MQQRRDERDATSAKSTLRLLENTVRDILADSRRLVEVPYTATLG DTLNALVANKVGAVPVAAPPGHWIGAGGTMTVESDKLTGAVRKHYIGMVTMLDIVAHI ADDQTGGADLDKKMVVPVSSIIGQSLEGLSLWTLNPNTSLLECMELFSKGIHRALVPM DSQMENVQGVELVESASSYRMLTQMDLLKFLKDHASELEDIISSSVKELGTINENVYA INDRTKVIEGIKCLRTALLNAVPIVQSSDDIEEDHRQLINGKGRKLIGTFSGTDLRGC HFSALQTWLPLRAHEFTELVSTSPLFAAREGLSPKQLVTCHPDLPLSEVIDKVVSQHV HRVWVVDQQGLLVGLVSLSDIVRVMRVSMLSKIDVM" gene complement(2251077..2262025) /locus_tag="TCM_047058" /note="dbxref CacaoGD:Thecc1EG047058" mRNA complement(join(2251077..2251639,2251735..2251901, 2252231..2252419,2252604..2252699,2252780..2252908, 2252998..2253177,2253265..2253375,2253745..2253888, 2254066..2254164,2254237..2254401,2254484..2254718, 2254897..2255024,2255426..2255521,2255591..2255686, 2256526..2256599,2256885..2256954,2257052..2257161, 2257298..2257451,2257760..2257872,2259211..2259346, 2259444..2259621,2259721..2259879,2261038..2261151, 2261239..2261418,2261651..2262018)) /locus_tag="TCM_047058" /product="WUS-interacting protein 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01015571001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038124t1" /inference="similar to AA sequence:TAIR:AT3G15880.1" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1126t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1126t1" mRNA complement(join(2251101..2251481,2251738..2251901, 2252231..2252419,2252604..2252699,2252780..2252908, 2252998..2253177,2253265..2253375,2253745..2253888, 2254066..2254164,2254237..2254718,2254897..2255024, 2255426..2255521,2255591..2255686,2256526..2256599, 2256885..2256954,2257052..2257161,2257298..2257451, 2257760..2257872,2259211..2259346,2259444..2259621, 2259721..2259879,2261038..2261151,2261239..2261418, 2261651..2262025)) /locus_tag="TCM_047058" /product="WUS-interacting protein 2 isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038124t7" /inference="similar to AA sequence:TAIR:AT3G15880.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(join(2251453..2251639,2251735..2251901, 2252231..2252419,2252604..2252699,2252780..2252908, 2252998..2253177,2253265..2253375,2253745..2253888, 2254066..2254164,2254237..2254401,2254484..2254718, 2254897..2255024,2255426..2255521,2255591..2255686, 2256526..2256599,2256885..2256954,2257052..2257161, 2257298..2257451,2257760..2257872,2259211..2259346, 2259444..2259621,2259721..2259879,2261038..2261151, 2261239..2261418,2261651..2261730)) /locus_tag="TCM_047058" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG038124t1" /codon_start=1 /product="WUS-interacting protein 2 isoform 1" /protein_id="EOY25836.1" /db_xref="TAIR:AT3G15880.1" /translation="MPSLSRELVFLILQFLDEEKYKETVYKLEEETGFFFNMRYFENC ITNGEWEEVEKYLSGFTKFDDNRYSMKIFFEIQKQKYLEALDKREKGRALEILVKDLK VFSTFNEELYKEITMLLTLENFRENEQLSKYGNTKSARAIMLVELKKLIEVNPVFRDK LQFPTLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGPPNGARAPSPVTN PLIGSIPKVGGFPLIGACGPFQPAAASAPALVTASIAGWMANPSSVANQAVSASPIGL SASGTAASMVKRPRTPTINLAMDYQTADSENVLKRPRPFGISEEMNSLPVTYPGQSHA HTLYSSDDLPKSVFANIDQGSTVKSMDFHPVQQTLLVVGTNIGDITIWEVGSRERLVS RNFKVWNHGACSMTLQATLASECTAAVNQVIWSSDGDLLGVAYSKHIVHVYSYHGSND LRSHLEIEAHIGSVNDLAFSQPNKQLWVVTCGDDKTIKVWDAVTGNRQFTFEGHEAPV YSVCPHQKENIPFIFSTAIDGKIKAWLYDNLGSRVDYDAPGHSCTTMAYSTDGTRLFS CGSNKEGESHIVEWNESEGAVKRTYCGLGKQSVGIVQFDTTRSRFLAAGDEFQVKFWD MDNVNLLTAINADGGLAASPCLRFTKNGNLLAVSTNDNGIKILANSDGIRLLRSIESC ALDASRVASAAAAKGPIISTFGTSSSTTGTSIAVADRSAPMTANVGLNVDSCNLPDVR PRVADELEKSKIWKLTEIHEPSQLRSLRLPDSFMPIRLVRMIYTNSGGAILALTDNAV HKLWKWQKNEQNLTGKATSSLQPQLWQPSSGIMMTNDIRETNQEDAVPCFALSKNDSY VLSASGRKVSLFNLMTFKTMTTFMAPPPAATFLAFHPKDNNFIAIGMDDSSIQIYNVR VDQVKSKLRGHQKRVTGLAFSNALNVLVSSGADAQLCAWSMDGWEKLSSKFLQIPSSN VPDPFGQTRVHFHHDQIHVLAVHGSQIAIYEAPKLECLKQWIPQESNRLITDAVYSSD SQSIYASFGDGSVYIFVATTLQVRCRISLGAYLPSNPRVYPVVVAAHPSEPNQFALGL TDGGVHVLEPPEEGWGSLPPPEIGAGPSISATGAGSDQQTR" CDS complement(join(2254460..2254718,2254897..2255024, 2255426..2255521,2255591..2255686,2256526..2256599, 2256885..2256954,2257052..2257161,2257298..2257451, 2257760..2257872,2259211..2259346,2259444..2259621, 2259721..2259879,2261038..2261151,2261239..2261418, 2261651..2261730)) /locus_tag="TCM_047058" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG038124t7" /codon_start=1 /product="WUS-interacting protein 2 isoform 2" /protein_id="EOY25837.1" /db_xref="TAIR:AT3G15880.1" /db_xref="TAIR:AT3G15880.2" /translation="MPSLSRELVFLILQFLDEEKYKETVYKLEEETGFFFNMRYFENC ITNGEWEEVEKYLSGFTKFDDNRYSMKIFFEIQKQKYLEALDKREKGRALEILVKDLK VFSTFNEELYKEITMLLTLENFRENEQLSKYGNTKSARAIMLVELKKLIEVNPVFRDK LQFPTLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGPPNGARAPSPVTN PLIGSIPKVGGFPLIGACGPFQPAAASAPALVTASIAGWMANPSSVANQAVSASPIGL SASGTAASMVKRPRTPTINLAMDYQTADSENVLKRPRPFGISEEMNSLPVTYPGQSHA HTLYSSDDLPKSVFANIDQGSTVKSMDFHPVQQTLLVVGTNIGDITIWEVGSRERLVS RNFKVWNHGACSMTLQATLASECTAAVNQVIWSSDGDLLGVAYSKHIVHVYSYHGSND LRSHLEIEAHIGSVNDLAFSQPNKQLWVVTCGDDKTIKVWDAVTGNRQFTFEGHEAPV YSVCPHQKENIPFIFSTAIDGKIKAWLYDNLGSRVDYDAPGHSCTTMAYSTDGTRLFS CGSNKEGESHIVEWNESEGAVKRTYCGLGKQSVGIVQFDTTRSRFLAAGDEFQVKFWD MDNVNLLTAINADGGLAVMGVLLI" mobile_element 2263398..2266306 /note="source:INTACT259_F188_scaffold_4-int 1 2930" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2266307..2269411 /note="source:CACAO_M_E44334_F15_scaffold_6 1 3105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2269412..2271252) /note="source:INTACT168_F46_scaffold_4-int 1 1837" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2272113..2272189) /note="source:INTACT257_F186_scaffold_6-int 2288 2365" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2274078..2275795 /note="source:scaffold_6_CACTA_0700 1 1718" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2278239..2280102 /note="source:scaffold_6_CACTA_0700 2039 3902" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2283721..2284390 /note="source:scaffold_6_CACTA_0700 3903 4572" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2284491..2284827 /note="source:scaffold_6_CACTA_0700 4573 4909" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2285113..2289325 /note="source:scaffold_6_CACTA_0700 4910 9122" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2289700..2290034 /note="source:scaffold_6_CACTA_0700 9123 9457" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2290135..2291422 /note="source:scaffold_6_CACTA_0700 9458 10745" /mobile_element_type="transposon:TIR/CACTA" gene 2292265..2294555 /locus_tag="TCM_027210" /note="dbxref CacaoGD:Thecc1EG027210" mRNA join(2292265..2293087,2293215..2293779,2293858..2293949, 2294035..2294555) /locus_tag="TCM_027210" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s03710.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s03710.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g698t2" mRNA join(2292465..2293087,2293215..2293779,2293858..2293949, 2294040..2294444) /locus_tag="TCM_027210" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s03710.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s03710.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc653t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g698t2" CDS join(2292480..2293087,2293215..2293779,2293858..2293949, 2294035..2294173) /locus_tag="TCM_027210" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25838.1" /db_xref="Phytozome:POPTR_0003s03710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S065" /translation="MEKEQEENGNRSQKTMEKEQEENGNRCQKTMVKEQEENGNSSSC CSVLIELPVGEAAAAEGAGPFNLEKAVCSHGLFMMAPNQWDPISRSLSRPLRLLDHHS PPLTVQVRISQPTASTLHLRVYGTRCLSPQHRHSLLNQVSRMLRLSEEEESKVREFRK IVEALHGEEEAAAECLRSFSGRVFRSPTLFEDMVKCILLCNCQFSRTLSMAKALCELQ FETQRPFSGVRAAEDDFIPKTPAGNELKRKLRVSKVSMRLEGKFAEPRADHSKSDLQP SQELDEPHAYKGMGSFPSPEELANLDESFLAKRCNLGYRASRILKLAKGIVQGIIQLM QLEEGCKEISLSSYNKLAEQLRQIDGFGPFTCANVLMCMGFYHVIPADSETIRHLKQV HSKSSTMQTVGRDVEGIYAKYAPFQFLAYWAELWHYYEQRFGKLSEMPFCGYKLITAS NMKMKATSKRTKVSDRE" CDS join(2292480..2293087,2293215..2293779,2293858..2293949, 2294040) /locus_tag="TCM_027210" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY25840.1" /db_xref="Phytozome:POPTR_0003s03710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVP4" /translation="MEKEQEENGNRSQKTMEKEQEENGNRCQKTMVKEQEENGNSSSC CSVLIELPVGEAAAAEGAGPFNLEKAVCSHGLFMMAPNQWDPISRSLSRPLRLLDHHS PPLTVQVRISQPTASTLHLRVYGTRCLSPQHRHSLLNQVSRMLRLSEEEESKVREFRK IVEALHGEEEAAAECLRSFSGRVFRSPTLFEDMVKCILLCNCQFSRTLSMAKALCELQ FETQRPFSGVRAAEDDFIPKTPAGNELKRKLRVSKVSMRLEGKFAEPRADHSKSDLQP SQELDEPHAYKGMGSFPSPEELANLDESFLAKRCNLGYRASRILKLAKGIVQGIIQLM QLEEGCKEISLSSYNKLAEQLRQIDGFGPFTCANVLMCMGFYHVIPADSETIRHLKQV HSKSSTMQTVGRDVEGIYAKYAPFQFLAY" mRNA join(2292503..2293087,2293215..2293779,2293858..2293906, 2294035..2294444) /locus_tag="TCM_027210" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s03710.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s03710.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc651t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g698t2" mRNA join(2292503..2293087,2293293..2293779,2293858..2293949, 2294035..2294444) /locus_tag="TCM_027210" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s03710.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s03710.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc651t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g698t2" CDS join(2292525..2293087,2293293..2293779,2293858..2293949, 2294035..2294173) /locus_tag="TCM_027210" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY25839.1" /db_xref="Phytozome:POPTR_0003s03710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S065" /translation="MEKEQEENGNRCQKTMVKEQEENGNSSSCCSVLIELPVGEAAAA EGAGPFNLEKAVCSHGLFMMAPNQWDPISRSLSRPLRLLDHHSPPLTVQVRISQPTAS TLHLRVYGTRCLSPQHRHSLLNQVSRMLRLSEEEESKVREFRKIVEALHGEEEAAAEC LRSFSGRVFRSPTLFEDMVKCILLCNCQAAEDDFIPKTPAGNELKRKLRVSKVSMRLE GKFAEPRADHSKSDLQPSQELDEPHAYKGMGSFPSPEELANLDESFLAKRCNLGYRAS RILKLAKGIVQGIIQLMQLEEGCKEISLSSYNKLAEQLRQIDGFGPFTCANVLMCMGF YHVIPADSETIRHLKQVHSKSSTMQTVGRDVEGIYAKYAPFQFLAYWAELWHYYEQRF GKLSEMPFCGYKLITASNMKMKATSKRTKVSDRE" CDS join(2292525..2293087,2293215..2293779,2293858..2293906, 2294035..2294078) /locus_tag="TCM_027210" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY25841.1" /db_xref="Phytozome:POPTR_0003s03710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVP4" /translation="MEKEQEENGNRCQKTMVKEQEENGNSSSCCSVLIELPVGEAAAA EGAGPFNLEKAVCSHGLFMMAPNQWDPISRSLSRPLRLLDHHSPPLTVQVRISQPTAS TLHLRVYGTRCLSPQHRHSLLNQVSRMLRLSEEEESKVREFRKIVEALHGEEEAAAEC LRSFSGRVFRSPTLFEDMVKCILLCNCQFSRTLSMAKALCELQFETQRPFSGVRAAED DFIPKTPAGNELKRKLRVSKVSMRLEGKFAEPRADHSKSDLQPSQELDEPHAYKGMGS FPSPEELANLDESFLAKRCNLGYRASRILKLAKGIVQGIIQLMQLEEGCKEISLSSYN KLAEQLRQIDGFGPFTCANVLMCMGFYHVIPADSETIRHLKQVHSKSSTMQTVGRDVE GQSCGTTMSKGLGN" gene 2295559..2297872 /locus_tag="TCM_027211" /note="dbxref CacaoGD:Thecc1EG027211" mRNA 2295559..2297872 /locus_tag="TCM_027211" /product="Leucine-rich repeat (LRR) family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s20940.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s20940.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01320t00002" CDS 2296001..2297482 /locus_tag="TCM_027211" /codon_start=1 /product="Leucine-rich repeat (LRR) family protein" /protein_id="EOY25842.1" /db_xref="Phytozome:POPTR_0001s20940.1" /db_xref="TAIR:AT1G80080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSD1" /translation="MAPHFPSLHTLFLIFVSSFQLARPFTVIMSDSGVPSTLIDGPQT GFSMNKNGARTNPREQEAVYDIMRATGNDWATSIPDVCRGRWHGIECMPDKDNVYHVV SLSFGALSDDTAFPTCDQKKSYISESITKLPHIRTLFLYRCFSYNPQPIPTFLGKLGS TLQTLVLRENGHVGPIPSELANLTRLRVLDLHKNNLNGSIPVSLGRITGLRSLDLSGN KLTASIPGFSYPVLNVLDLSQNLLMGPIPSSLGSCQSLVKMDFSHNSLTGSIPDSVGG LKDLMLLDMSFNRLSGPFPISLRSLTSLQALILKGNQMGSTAIPSDCFDGMKSLMILV LSNMNLHGPIPESIGRLPNLRVVYLDGNRFNGSIPSNFRDLKHVSELRLNDNYLTGPV PFGRQMVWKMRRKLKLNNNSGLCYNANSGLEDALDTSFDTGIGLCDTPKPGSARTVQH LSTMNEEDMTRTTNVSSGAVHKTLVSVRLFQLTALLLFILLFL" gene complement(2301724..2318288) /locus_tag="TCM_027212" /note="dbxref CacaoGD:Thecc1EG027212" mRNA complement(join(2301724..2302293,2302783..2302929, 2305044..2305310,2305397..2306945,2307088..2307330, 2307456..2307734,2307818..2308015,2308152..2308313, 2308409..2308882,2308967..2309221,2309351..2309457, 2309548..2310164,2310289..2310542,2310746..2310853, 2310935..2311124,2311201..2311324,2311416..2311657, 2312255..2312381,2312454..2312908,2312995..2313299, 2313398..2313895,2313976..2314061,2314161..2315438, 2315846..2316236,2316362..2316578,2317785..2318288)) /locus_tag="TCM_027212" /product="Pre-mRNA-processing-splicing factor isoform 1" /inference="alignment:exonerate-protein:2:frave:gene15731" /inference="similar to AA sequence:Phytozome:GSVIVT01017346001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc443t11; alternateUTRof:Thecc1EG027212t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc443t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2862t2" mRNA complement(join(2301724..2302293,2302783..2302929, 2305044..2306945,2307088..2307330,2307456..2307734, 2307818..2308015,2308152..2308313,2308409..2308882, 2308967..2309221,2309351..2309457,2309548..2310164, 2310289..2310542,2310746..2310853,2310935..2311124, 2311201..2311324,2311416..2311657,2312255..2312381, 2312454..2312908,2312995..2313299,2313398..2313895, 2313976..2314061,2314161..2315438,2315846..2316236, 2316362..2316578,2317785..2318288)) /locus_tag="TCM_027212" /product="Pre-mRNA-processing-splicing factor isoform 1" /inference="alignment:exonerate-protein:2:frave:gene15731" /inference="similar to AA sequence:Phytozome:GSVIVT01017346001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc443t7; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc443t7" gene 2301735..2306847 /locus_tag="TCM_027213" /note="dbxref CacaoGD:Thecc1EG027213" mRNA join(2301735..2302292,2302782..2302929,2305044..2305306, 2305393..2306398) /locus_tag="TCM_027213" /product="Brassinosteroid insensitive 1-associated receptor kinase 1 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene15733" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038819t1" /inference="similar to AA sequence:frave:gene15733" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07565t00001" CDS join(2302249..2302292,2302782..2302929,2305044..2305306, 2305393..2306053) /locus_tag="TCM_027213" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene15733; paralog of Thecc1EG038819t1" /codon_start=1 /product="Brassinosteroid insensitive 1-associated receptor kinase 1 isoform 1" /protein_id="EOY25847.1" /db_xref="TAIR:AT1G52540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LSC2" /translation="MGFCSIICCGKGVDRKEKGKKQPTWRVFSLKELHSATNNFNYDN KLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKAEVEFSVEVEILARVRHKNLLSLRGY CAEGQERLIVYDYMPNLSLLSHLHGQHSTDCQLEWTRRMNIAIGSAEGIAYLHHHSTP HIIHRDIKASNVLLDSDFQPQVADFGFAKFIPDGATHVTTRVKGTLGYLAPEYAMLGK ASESCDVYSFGILLLELASGRKPLEKLSATSKRSIAEWALPLACEGKFSEVADPRLNG KYVEEELKRLVLIALVCADNRPEKRPTMLEVLELLDGESKEKLVELENNEVFKNPQSA VCYDDGTPAAEESSDIIKEENDPKPVKETKHENALDG" mRNA join(<2302808..2302929,2305044..2305306,2305393..2306847) /locus_tag="TCM_027213" /product="Brassinosteroid insensitive 1-associated receptor kinase 1 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene15733" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038819t1" /inference="similar to AA sequence:frave:gene15733" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc451t15; inference alignment:Newbler:10:TSA:cgbaL_g07565t00001" CDS join(<2302810..2302929,2305044..2305306,2305393..2306053) /locus_tag="TCM_027213" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene15733; paralog of Thecc1EG038819t1" /codon_start=1 /product="Brassinosteroid insensitive 1-associated receptor kinase 1 isoform 2" /protein_id="EOY25848.1" /db_xref="TAIR:AT3G15890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LSC2" /translation="WRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVK RLKVWSNKAEVEFSVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLH GQHSTDCQLEWTRRMNIAIGSAEGIAYLHHHSTPHIIHRDIKASNVLLDSDFQPQVAD FGFAKFIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELASGRKPL EKLSATSKRSIAEWALPLACEGKFSEVADPRLNGKYVEEELKRLVLIALVCADNRPEK RPTMLEVLELLDGESKEKLVELENNEVFKNPQSAVCYDDGTPAAEESSDIIKEENDPK PVKETKHENALDG" mRNA complement(join(2305397..2306685,2308407..2308882, 2308967..2309221,2309351..2309457,2309548..2310164, 2310289..2310542,2310746..2310853,2310935..2311124, 2311201..2311324,2311416..2311657,2312255..2312381, 2312454..2312908,2312995..2313299,2313398..2313895, 2313976..2314061,2314161..2315438,2315846..2316236, 2316362..2316578,2317785..2318241)) /locus_tag="TCM_027212" /product="Pre-mRNA-processing-splicing factor isoform 4" /inference="alignment:exonerate-protein:2:frave:gene15731" /inference="similar to AA sequence:Phytozome:GSVIVT01017346001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc436t16; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc443t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2862t2" CDS complement(join(2306655..2306685,2308407..2308882, 2308967..2309221,2309351..2309457,2309548..2310164, 2310289..2310542,2310746..2310853,2310935..2311124, 2311201..2311324,2311416..2311657,2312255..2312381, 2312454..2312908,2312995..2313299,2313398..2313895, 2313976..2314061,2314161..2315438,2315846..2316236, 2316362..2316578,2317785..2318047)) /locus_tag="TCM_027212" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Pre-mRNA-processing-splicing factor isoform 4" /protein_id="EOY25846.1" /db_xref="Phytozome:GSVIVT01017346001" /db_xref="TAIR:AT1G80070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6P2Q9" /translation="MWNNNNNGAQIAPPGTGGSTIPPPPAAQPSYTVLAPQTTPQEAE AKLEEKARKWMQLNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDK RVYLGALKFIPHAVYKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQ WGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLEMDEEEDS AVYAWFYDHKPLVKTKLINGPSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDM ESFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPH LYNNRPRKVKLGVYHTPMVMYIKTEDPDLPAFYYDPLIHPITTTNKERREKKIYDDED EDDFVLPEGVEPLLNDTQLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLVSEWYK EHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWV EAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCR EILRLTKLVVDANVQFRLGNVDAFQLADGLQYTFSHVGQLTGMYRYKYRLMRQIRMCK DLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRH SKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKA NIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLT RLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKL LILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGI EFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYK WCQGINNLQGIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTAK NNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPNE FITYWDTKVETRHPIRLYSRYIDKVHILFRFTHDEARDLIQRYLTEHPDPNNENMVGY NNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLL FSMCGFEVRILPKTRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENR VRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKI GLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSH EEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIP RINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVI QALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRR FTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVM DLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESK DMFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDL AYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSS QNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIH TSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPN IVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILI LRALHVNNEKAKMLLKPDKTIVTEPHHIWPSLTDDQWMKVAWPERSVEA" CDS complement(join(2306754..2306945,2307088..2307330, 2307456..2307734,2307818..2308015,2308152..2308313, 2308409..2308882,2308967..2309221,2309351..2309457, 2309548..2310164,2310289..2310542,2310746..2310853, 2310935..2311124,2311201..2311324,2311416..2311657, 2312255..2312381,2312454..2312908,2312995..2313299, 2313398..2313895,2313976..2314061,2314161..2315438, 2315846..2316236,2316362..2316578,2317785..2318047)) /locus_tag="TCM_027212" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pre-mRNA-processing-splicing factor isoform 1" /protein_id="EOY25843.1" /db_xref="Phytozome:GSVIVT01017346001" /db_xref="TAIR:AT1G80070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6P2Q9" /translation="MWNNNNNGAQIAPPGTGGSTIPPPPAAQPSYTVLAPQTTPQEAE AKLEEKARKWMQLNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDK RVYLGALKFIPHAVYKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQ WGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLEMDEEEDS AVYAWFYDHKPLVKTKLINGPSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDM ESFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPH LYNNRPRKVKLGVYHTPMVMYIKTEDPDLPAFYYDPLIHPITTTNKERREKKIYDDED EDDFVLPEGVEPLLNDTQLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLVSEWYK EHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWV EAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCR EILRLTKLVVDANVQFRLGNVDAFQLADGLQYTFSHVGQLTGMYRYKYRLMRQIRMCK DLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRH SKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKA NIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLT RLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKL LILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGI EFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYK WCQGINNLQGIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTAK NNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPNE FITYWDTKVETRHPIRLYSRYIDKVHILFRFTHDEARDLIQRYLTEHPDPNNENMVGY NNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLL FSMCGFEVRILPKTRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENR VRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKI GLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSH EEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIP RINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVI QALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRR FTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVM DLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESK DMFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDL AYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSS QNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIH TSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPN IVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILI LRALHVNNEKAKMLLKPDKTIVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNV NTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELI VTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKK FICIADLRTQIAGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLND LEPLGWMHTQPNELPQLSPQDVTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYK LTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVK HTVSMKYGVKLGPPREYYQEDHRPTHYLEFSNLEEGETAEGDREDTFT" CDS complement(join(2306754..2306945,2307088..2307330, 2307456..2307734,2307818..2308015,2308152..2308313, 2308409..2308882,2308967..2309221,2309351..2309457, 2309548..2310164,2310289..2310542,2310746..2310853, 2310935..2311124,2311201..2311324,2311416..2311657, 2312255..2312381,2312454..2312908,2312995..2313299, 2313398..2313895,2313976..2314061,2314161..2315438, 2315846..2316236,2316362..2316578,2317785..2318047)) /locus_tag="TCM_027212" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pre-mRNA-processing-splicing factor isoform 1" /protein_id="EOY25844.1" /db_xref="Phytozome:GSVIVT01017346001" /db_xref="TAIR:AT1G80070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6P2Q9" /translation="MWNNNNNGAQIAPPGTGGSTIPPPPAAQPSYTVLAPQTTPQEAE AKLEEKARKWMQLNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDK RVYLGALKFIPHAVYKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQ WGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLEMDEEEDS AVYAWFYDHKPLVKTKLINGPSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDM ESFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPH LYNNRPRKVKLGVYHTPMVMYIKTEDPDLPAFYYDPLIHPITTTNKERREKKIYDDED EDDFVLPEGVEPLLNDTQLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLVSEWYK EHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWV EAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCR EILRLTKLVVDANVQFRLGNVDAFQLADGLQYTFSHVGQLTGMYRYKYRLMRQIRMCK DLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRH SKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKA NIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLT RLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKL LILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGI EFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYK WCQGINNLQGIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTAK NNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPNE FITYWDTKVETRHPIRLYSRYIDKVHILFRFTHDEARDLIQRYLTEHPDPNNENMVGY NNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLL FSMCGFEVRILPKTRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENR VRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKI GLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSH EEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIP RINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVI QALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRR FTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVM DLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESK DMFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDL AYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSS QNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIH TSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPN IVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILI LRALHVNNEKAKMLLKPDKTIVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNV NTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELI VTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKK FICIADLRTQIAGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLND LEPLGWMHTQPNELPQLSPQDVTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYK LTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVK HTVSMKYGVKLGPPREYYQEDHRPTHYLEFSNLEEGETAEGDREDTFT" mRNA complement(join(<2307587..2307614,2307818..2308015, 2308152..2308313,2308409..2308882,2308967..2309221, 2309351..2309457,2309548..2310164,2310289..2310542, 2310746..2310853,2310935..2311124,2311201..2311324, 2311416..2311657,2312255..2312381,2312454..2312908, 2312995..2313299,2313398..2313895,2313976..2314061, 2314161..2315438,2315846..2316236,2316362..2316578, 2317785..2318288)) /locus_tag="TCM_027212" /product="Pre-mRNA-processing-splicing factor isoform 3" /inference="alignment:exonerate-protein:2:frave:gene15731" /inference="similar to AA sequence:Phytozome:GSVIVT01017346001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc451t17; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc443t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2862t2" CDS complement(join(<2307588..2307614,2307818..2308015, 2308152..2308313,2308409..2308882,2308967..2309221, 2309351..2309457,2309548..2310164,2310289..2310542, 2310746..2310853,2310935..2311124,2311201..2311324, 2311416..2311657,2312255..2312381,2312454..2312908, 2312995..2313299,2313398..2313895,2313976..2314061, 2314161..2315438,2315846..2316236,2316362..2316578, 2317785..2318047)) /locus_tag="TCM_027212" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pre-mRNA-processing-splicing factor isoform 3" /protein_id="EOY25845.1" /db_xref="Phytozome:GSVIVT01017346001" /db_xref="TAIR:AT1G80070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6P2Q9" /translation="MWNNNNNGAQIAPPGTGGSTIPPPPAAQPSYTVLAPQTTPQEAE AKLEEKARKWMQLNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDK RVYLGALKFIPHAVYKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQ WGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLEMDEEEDS AVYAWFYDHKPLVKTKLINGPSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDM ESFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPH LYNNRPRKVKLGVYHTPMVMYIKTEDPDLPAFYYDPLIHPITTTNKERREKKIYDDED EDDFVLPEGVEPLLNDTQLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLVSEWYK EHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWV EAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCR EILRLTKLVVDANVQFRLGNVDAFQLADGLQYTFSHVGQLTGMYRYKYRLMRQIRMCK DLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRH SKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKA NIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLT RLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKL LILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGI EFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYK WCQGINNLQGIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTAK NNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPNE FITYWDTKVETRHPIRLYSRYIDKVHILFRFTHDEARDLIQRYLTEHPDPNNENMVGY NNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLL FSMCGFEVRILPKTRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENR VRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKI GLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSH EEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIP RINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVI QALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRR FTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVM DLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESK DMFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDL AYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSS QNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIH TSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPN IVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILI LRALHVNNEKAKMLLKPDKTIVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNV NTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELI VTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKVKEIRCIAM" gene 2319282..2320311 /locus_tag="TCM_027214" /note="dbxref CacaoGD:Thecc1EG027214" mRNA 2319282..2320311 /locus_tag="TCM_027214" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.17 coverage" CDS 2319758..2320066 /locus_tag="TCM_027214" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25849.1" /translation="MKAMLVRFNLKMGVCEKRIGIHFRLSRANITFFTMGLPRLCSLY PYPWPPWQSAKHFILGYLAGACQSVVFFGLSFQVNHLFPLTSERVVGLPSKDIDFHHE " mobile_element complement(2321836..2322211) /note="source:CACAO_Mariner_E176_scaffold_6 1914 2300" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(2322422..2322736) /note="source:CACAO_Mariner_E176_scaffold_6 8623 8938" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 2325508..2327552 /locus_tag="TCM_027215" /note="dbxref CacaoGD:Thecc1EG027215" mRNA join(2325508..2325979,2326327..2326426,2326583..2326682, 2327013..2327092,2327239..2327552) /locus_tag="TCM_027215" /product="U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400046301" /inference="similar to AA sequence:ricco:29841.m002877" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11676t00001" CDS join(2325757..2325979,2326327..2326426,2326583..2326682, 2327013..2327092,2327239..2327494) /locus_tag="TCM_027215" /note="dbxref ricco:29841.m002877" /codon_start=1 /product="U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative" /protein_id="EOY25850.1" /db_xref="TAIR:AT1G80060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RV86" /translation="MESYEENNNSSRGGSLRVFNLLDRRRLAPLNFNSRGGGDGDDND VIVARKLLYRKLPQQRNFKLSVLKLDGSLFDVNVGRNATVAELKVAIEELFATLPGDT HGSISWSHVWGHFCLSYEGQKLVNNKACIRNFGIKDGDQLQFIRHMSVNQLPLRRRLK HHNVPCKWLSSGSSYHQEKQHNSVNFNNKDENQEDSSTSDHYEEEEEIPLPEVKLGHL LRGWLSCTRLWGASRKGPEGPSNPPRFTLQCLGG" gene 2328008..2330883 /locus_tag="TCM_027216" /note="dbxref CacaoGD:Thecc1EG027216" mRNA join(2328008..2328984,2329271..2329807,2329988..2330883) /locus_tag="TCM_027216" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043352t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS join(2328469..2328984,2329271..2329807,2329988..2330182) /locus_tag="TCM_027216" /note="paralog of Thecc1EG043352t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25851.1" /translation="MGNLCSISISTGDTVPRCCHCIVGEASYTSKLEDNLKALKKELA KLNARRDDVNRRVDLAEQQHMELLNEVQLWLSSVQAAGAEAEEMIENAPQAVRDTRSL EDIYSRCNEALAEPANFKQAKLKDHWKSAMDAEMQMITKNETWTLVDRPTDKNIIKVK WIYRTKLNPDGSAPKAWNKRIDDHFKNQGFQRSMNESTLYVKKENGSALLIVALYGDD LLISGPKGKYLTKFKAQMQKVFEITDLGEMTYFLGMEIIQSAREVVLHQGNYAKDLLN RFNMGGCKAVSTPLSTSAKFCKDDGTAKANGQLYRSIIGSLLYLVVTRPDIMFATCLV SRFMQDPSEIHFATAKRVVAQSTAEAEYIACLAAANHALWLRKLLVELGFKQVKGTLM NVDNQSAIAIVKNLVQHERTKHI" gene 2331045..2340714 /locus_tag="TCM_027217" /note="dbxref CacaoGD:Thecc1EG027217" mRNA join(2331045..2331672,2332735..2332814,2333532..2333860, 2334115..2334230,2334484..2334768,2334865..2335362, 2335469..2335640,2335728..2335782,2337927..2338132, 2338237..2339352,2339728..2340714) /locus_tag="TCM_027217" /product="Non-LTR retroelement reverse transcriptase" /inference="alignment:exonerate- protein:2:frave:gene28626.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027189t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS join(2331580..2331672,2332735..2332814,2333532..2333860, 2334115..2334230,2334484..2334768,2334865..2335362, 2335469..2335640,2335728..2335782,2337927..2338132, 2338237..2339352,2339728..2339813) /locus_tag="TCM_027217" /note="paralog of Thecc1EG027189t1" /codon_start=1 /product="Non-LTR retroelement reverse transcriptase" /protein_id="EOY25852.1" /db_xref="TAIR:AT5G42905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2HVE2" /translation="MSLANNGIEDLRGTPTCLNLQTLFLSNSKLKSGEKRQVSRMKPL YILSFGYHKTTKERPVSKLRTMKGATAATEGVLSKALSPPILDDRSRKKVRFKGDGQE TNQAGSHHHPSFRDVLMSSESEDLFSEDNRDSEGEIGLEDTNMEDSGSDPSVMERDCD ADYTFGSWTIFDCETLVSLLSQRDAGPNSSSSLDSVSWNAIALLPQVTAHSLKDENTT HSDSSPFGPWMLVSRRKNKYEEGRQYLTRKKNSGKNRTQGSRFSLLEDKEEKVVALDQ SIILERQSSKQNFTGKEKIESFNRKEDNGQFGKALEGEAVVRESLLKDVLTGKQVSPL VPNGNEVDSKDVSRIRDISSHRHILDPNKHTVATMVVKTVDEGLPTRKLMTRNSRVGG VFIHEKDPKVTDKKILTHLQGMSIKKRARAKPKTTIMHSNAMSNLLDDSGLNLAPVDA LVEIIHQPAAVNDLEKLGASDNNFVRLIREFVKQHNYYMAVLVEPRIRGFNAERVINS TGFDRSHRIESAGFSGVGNSWYLSTVYGHKNPSIRKVHLLRWNTLCKPKAQGGMGIRR LSLMNDAFILILCWGLLSKPDALWVRVLVNKYNFIRADYSKDPMRYTWVGEVPLINVV ADMGFMLNLRARVKDYIMPNGDWDKERLTSILPIEVVNQILCIIPPTLSASLDMPYWA LSPYGYFTISSTYKHLGSLADSTREENNKMWRLVWDLRGPHRVCLFLFFCLHKRILTN AERVRRKMSSDASCPHCYGVEETCLHVLRDCPALETLWRRILPQSGINQFFQIPLIDW LSSNLNLKNLYVFDVPWNIVLGITCWYTWKWRNLFIFEGRELSVEGRLSIIRSVAVDS HNTWSTPRIISGGMRHQEEILVGWSPPPEDWIAVNSDGAFKSAVGIAAAGGVLRDSHG TWIVGYACKLETSSVFRAELWGVYKGLQLAWERGFRKVKLQSDNKAVVQAISFSSVHP GSNLDLIRAIKGQSNKLSLKFGLLLCSLSNHLDGIGVHQ" gene 2340588..2344496 /locus_tag="TCM_027218" /note="dbxref CacaoGD:Thecc1EG027218" mRNA join(2340588..2341068,2341875..2342934,2343303..2343587, 2344250..2344496) /locus_tag="TCM_027218" /product="Cyclin F-box" /inference="alignment:exonerate-protein:2:frave:gene04527" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027224t1" /inference="similar to AA sequence:frave:gene04568" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS join(2340867..2341068,2341875..2342934,2343303..2343587, 2344250..2344253) /locus_tag="TCM_027218" /note="dbxref frave:gene04568; paralog of Thecc1EG027224t1" /codon_start=1 /product="Cyclin F-box" /protein_id="EOY25853.1" /translation="MKLGKRHPSEVAKSLPGWERKFMSYKALKKQVKLINPHCNGKKG SRSGDRKLSEGGSNAGNSPAQGAVCKNWYSVFNDFLDSRRRSALNLVPMLVIPTKKSN KNRKLYSLQAKAKICNIELPKSYGTRFCGSCYDWLAMVDENMVITLLHPFKDGITIDL PKIKVVKTSSYQYDIQKVILSVDPVSYPDSYVVIVIHGTHSRLAFYKPGQRDWIYLDK DFTLFTDVIFYRSLVYAIGNWNMIVSFDVNDSSLDDTTKPPKLKILVPADKRHQNSDN YSYKAYLVESSKGNLFSIKRDLDFDEDDNYLTKKFKIFKLILDDQSGELLEQKEVKNI DGDIIFVGDNRTLAISILDFPEAEQPNSIYFIDDLFEMFAYQPYGPRDVGIFNIKDET LAEHYQFKPSHKNLPPYTWILPPVDFKLKYSIIQAAATVSLRSRETPHRLWPSPEGGS GKSRPGREAGVARAYCVQKESYGLESFSGSAPPAVLVALQADSWISLGLDMHRTPSLQ KAITIEEG" gene 2345208..2347417 /locus_tag="TCM_027219" /note="dbxref CacaoGD:Thecc1EG027219" mRNA join(2345208..2346152,2346267..2347417) /locus_tag="TCM_027219" /product="NBS-LRR type disease resistance protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G61190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027238t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s32030.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1268t25_G2" CDS join(2345385..2346152,2346267..2346758) /locus_tag="TCM_027219" /note="paralog of Thecc1EG027238t1" /codon_start=1 /product="NBS-LRR type disease resistance protein" /protein_id="EOY25854.1" /db_xref="Phytozome:POPTR_0001s32030.1" /db_xref="TAIR:AT4G10780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H6R9" /translation="MRNSSKQAVFSNPQFIHSFFCVHQPNIMGNLCAISISTADTVSR CWDCIVGQASYICKLEDNLKALSVELAKLKARSDDLKHRVDLAEQQRMKQLNQVQLWL SRVQTVAAEAEELIQNGPREIQKLCFAGCFSKNCKSSYKFGKQVSRKLEEIVDLNEKG EFERVVENELAPQVDVRPTEPTVGLESTLANVWRLLEEKDVGIVGLYGLGGVGKTTLL TQINNKLSNNLFGYDVVIWVVVSKDHTIEKVQEKICEKRVDLIKVGIPVPNQDNVSKL IFTTRFLEVCGKMEAQEKIEVKCLRKDEAWELFEKKVGEETLDSHPNTRGLAKQVAAK RGGLPLALITIGRAMACKKMPHNWKYAIEVLKKFSHKLARMDQQVYSLLKFSYDSLPI DTMRSCLLCCSLYPEDFFISVNMLIEC" gene complement(2347419..2364913) /locus_tag="TCM_027220" /note="dbxref CacaoGD:Thecc1EG027220" mRNA complement(join(2347419..2348201,2351910..2352027, 2364888..2364913)) /locus_tag="TCM_027220" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" CDS complement(join(2347974..2348201,2351910..2352020)) /locus_tag="TCM_027220" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25855.1" /translation="MNCRTLGSLRGKLGFRDWNGGLGGGRSLEAEWTVIVEVFPPIYT FERRLKSISIDFIVPLNLFPPLLISFNANLIPTVKVEWKLCQLGAIEYFDLSQTWEGE CILTYALQFW" mobile_element complement(2358946..2359987) /note="source:CACAO_M_S_E100409_F33_scaffold_9 1897 2939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2359988..2363113 /note="source:CACAO_M_E44340_F42_scaffold_6 1 3126" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2363114..2365009 /note="source:CACAO_M_S_E5962_F33_scaffold_2 1028 2911" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2366256..2371995 /locus_tag="TCM_027221" /note="dbxref CacaoGD:Thecc1EG027221" mRNA join(2366256..2366340,2366557..2366681,2371170..2371208, 2371344..2371995) /locus_tag="TCM_027221" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027228t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS join(2366299..2366340,2366557..2366681,2371170..2371208, 2371344..2371665) /locus_tag="TCM_027221" /note="paralog of Thecc1EG027228t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25856.1" /translation="MAFKLKKARPNNFLFCWLARICLNLFKDLFLLVLTHQNLPIIIM VMILLKLSNKPLNNLVFNDNLWDHRKKCDWGKPSMGFMKFNIDGAARGCPSPSSMGGA MHNHEEDVKILFSKPLGHGDSNMAEILAIKEAFYLFVAFSWCFIYSLINESDSFNAVC GLTNHLLFLRDLKGS" mobile_element complement(2369402..2370436) /note="source:CACAO_M_E69760_F9_scaffold_9 11945 12921" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2371585..2380273) /locus_tag="TCM_027222" /note="dbxref CacaoGD:Thecc1EG027222" mRNA complement(join(2371585..2372928,2373015..2373145, 2374551..2374992,2375077..2375949,2376033..2376368, 2376456..2377596,2379225..2379760,2379910..2380273)) /locus_tag="TCM_027222" /product="TMV resistance protein N" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031726" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046028t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s04750.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1179t4" CDS complement(join(2372383..2372928,2373015..2373145, 2374551..2374992,2375077..2375949,2376033..2376368, 2376456..2377596,2379225..2379718)) /locus_tag="TCM_027222" /note="paralog of Thecc1EG046028t1" /codon_start=1 /product="TMV resistance protein N" /protein_id="EOY25857.1" /db_xref="Phytozome:POPTR_0007s04750.1" /db_xref="TAIR:AT5G36930.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RVC7" /translation="MAVSMVQESSSSISRYTYHVFLSFRGTDTRKNFTDHLYMALVHT GIHTFRDDDEIERGENIRDEIERALHESKMSIIIFSKNYASSTWCLNELVKIMEHRKF SKHIVLPIFYDVNPSQVKKQTGSFAEAFARHEESFKYEMDMVQRWRTALREVADLGGM LLEDRHESQFIQDIIKQVQSKLHRTALYVPPYLVGIDAFVARINWWLRDGSNKVGIAT ICGIGGIGKTTIAKLVYNQNFQRFESYSFLADVRETTQERNGLVQLQRQLISDILKGK ANKIYNSDDGITKIKETICHRRVLLVLDDVDDLEKVTEIIGVQIPFHPGSKIIVTSRH RCLLSDLFIRQMFDLEESSNYGDLCKVFEVKELAFNESLQLFNWYAFGQNNPIESYMD CARSIVQHCGGLPLALQVLGSSLSGKSINVWRSALEKLKAIPHSKIQKILRISYDSLQ DDHDKNLFLDIACVFIGKDRDYTTKILDGCDYYTVIGIENLINRSLLVVSERNKLMMH QMIRDMGRNIVCQESFDLGKRSRLWHKDAFDALREKIGTKTIKCLTIDLQRLLEEKYG KTATNHSKNSFHMSNEVHIETDAFTKMQRLKLLQLDYVKLKGDYRDFPRSLIWLCWHG FPQEYLPRDLNISGLVVLEMRNSSLKHVWNDTKYFLPNLKILNLSHSHGLLKILNLSG LHNLERLMLKDCIKLIEVDQSIAEIKTLVVLNLKGCKSLRKLPKTIGSLESLEELILS GCSTFNDAPRDLQNMNSLKVLNLDGTAIYESNSWLSWLSLKRSKELGFFWASLPCSLV KLSLEGCRLSDDVMAVDLSYLPSLKSLNLSRNPIRSLPESIIHLTNLDELLLICCKEL QWLPKLPMSGLHVITSQPLYRISSLPRLLNLRRCIVFGCEKLTEVEGVFKLEPVENFE VEKIKSLFNMDLIGSIKLKIYNYLTDTKMVATTQIFRDGDITSCFVSGNEVPILFQSR SKGSKISLSLPQNPGEKVCWLKLCIVYSLVSDEIFDHLPWVQITNETKKLTWFYFSSF IGIPETNSNTILWLIHWPVMDYQLENGDLVSCKLSTFGLNVREFGVTCVSETKVMCED DPPQYSQENEDIWREIELKVNEEFLKLGSSGNIKVQIYNDLEEPKTIASPKVFYDCGI ISMYDINGFPKGWYNHHAVGNKVSFVVARSPGQRIGYLNLGVILLDEDDKIFDFLSRI EIVNKTKDTKWIYYKNFIGIPKAKNKIFWFSFWRFMGELKEGDQVSCTVFSDLYVKEF VIDLVYEPDDDLQPECNSAYQHLQGNTMYSCWLFLLFVRFLFKSQRTLYRIQSLDKLE " gene complement(2380586..2381996) /locus_tag="TCM_027223" /note="dbxref CacaoGD:Thecc1EG027223" mRNA complement(join(2380586..2381097,2381245..2381424, 2381813..2381996)) /locus_tag="TCM_027223" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046027t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Velvet:11:TSA:cacao3v3scxLoc189t1_G2" CDS complement(join(2380946..2381097,2381245..2381424, 2381813..2381906)) /locus_tag="TCM_027223" /note="paralog of Thecc1EG046027t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25858.1" /translation="MHFWNITWSNLATSKCEVFGWQVMKKSITVIVMDMVRESAGIKA TSSKKKSKDNCVWVKPPNSSLKFNIDGAARRCPGPSGIGGALRNHNGYSSNTVKRVNH PSSVPWRFKGISNQINSLKKKCRCWSVIHTLREANHLSD" gene 2386937..2393150 /locus_tag="TCM_027224" /note="dbxref CacaoGD:Thecc1EG027224" mRNA join(2386937..2387514,2387580..2387938,2388025..2389038, 2389438..2389527,2390634..2390693,2390799..2391086, 2391192..2391331,2391926..2393150) /locus_tag="TCM_027224" /product="Cyclin F-box" /inference="alignment:exonerate-protein:2:frave:gene04568" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027218t1" /inference="similar to AA sequence:Phytozome:GSVIVT01038404001" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage" CDS join(2387636..2387938,2388025..2389038,2389438..2389527, 2390634..2390693,2390799..2391086,2391192..2391331, 2391926..2392946) /locus_tag="TCM_027224" /note="paralog of Thecc1EG027218t1" /codon_start=1 /product="Cyclin F-box" /protein_id="EOY25859.1" /db_xref="Phytozome:GSVIVT01038404001" /db_xref="TAIR:AT1G12220.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AWG8" /translation="MQEYNIINSLLNACLLERDEDVKFVRMHDVIHDMLLWIARECEA LEKKFLVRVGEGSIEAFDVGNWEGVRMPSVKNGIEDLRGNPAYPNLQTLFLIDNKLKG TSELISLEYLDLSYTGIKELPIELNRLSKLKFLKLFETYYVPKIPRQLICRFSKLKRF IMTRSESCGDEMDEDNILNGDNEGLIKELKYLQHLDELIIEIKCIFALESLFSSHKLR GYTEHLCLRDLRKTKVLNALCLANMEHLERLNISCCKSLEEMAIRKMEKELEEGTSSL FPTNINTFSPCFHALSRVCISKCINLTDMAWFIFAPNLKCLSVMFCLRMEGIISEVAT VVGVPQPSPFAKLEKLDLREQARKLDLRELLELKSIYWDALPFPCLRQIKEFNCPKLK KLPLNFDSGKQISIEGYEEWWEELQWKDEATRNAFLPSFKQVDWWKERLAHGQVNQFD DSYMYVEINIEREKGCWKEEYTGIYLVEIFMVPAFKSIAGEEMKLGKRHPSEVAKSLP GWERKLMSYKALKKQVKLINPHCNGKKGSRSGDRKLSEGGSNAGNSPAQGTGSLDREL NKINTYYIDKQEDYVIRFRYISMYACIRFSSFKDIVILFFLEVDNPAISSVVIVRLFQ SLGSQDIKRSALNLVPMLVIPTKKSNKNRKLYSLQAKAKICDIELPKSYGTRFCGSCY DWLAMVDENMIITLLNPFKDGITIDLPKIEVVKTSSYEYDIQKVILSVDPLSYPDNYV VVVIHGTHYRLAFYKSGQRDWIYLDKDFTLFTDVIFYRSLVYAIGNWNMIVSFDVNDS SLDDTLKPPKLKILVPADKWYQNLDNYSYKAYLVESSKGNLFSIKRDLDFDKDDNYLT KNFKIFKLILDDQSGELLEQKEVKNIDGDVVFVGDNRTLAISILDFPEAEQPNSIYFI DDLFDMYAYQPYGPRDVGIFNIKDETLAEHYQFKPSHKNLSPYTWILPPVDFKLKPV" gene 2393175..2399797 /locus_tag="TCM_027225" /note="dbxref CacaoGD:Thecc1EG027225" mRNA join(2393175..2393466,2393789..2394560,2395333..2395542, 2396100..2396373,2397883..2398402,2399561..2399797) /locus_tag="TCM_027225" /product="Histidine kinase" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020280t1" /inference="similar to AA sequence:ricco:29904.m002906" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1624t5" CDS join(2394069..2394560,2395333..2395542,2396100..2396351) /locus_tag="TCM_027225" /note="dbxref ricco:29904.m002906; paralog of Thecc1EG020280t1" /codon_start=1 /product="Histidine kinase" /protein_id="EOY25860.1" /db_xref="TAIR:AT4G13750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6X0P1" /translation="MLHEVCLLLGIVEWIQNFAAFCSTDISNIFLSSEGLGMKTGRSE LKTRSNCMQNTIGRLSYAEKENKVFDRTYKQPEVCHMIDGAEVSAETLGNKNRKQSSR VDEQKDVALVIESIRRDEFHLDPNLSDMESRMLNKQHACIGRALHFLSKELCSQDSHF LLELVENADDNVYSETVEPTLTSILQEQGIILFNNEQGFSAQNIRALCDSGSSTKKVA VGCAGKKGIGFKSVFQVTDAPEIHSNGFPVKFDISDGWVGFVLPTLVPSCNVDSFEML LGGDNNQLDNKCWITCFVSVTSKGNDKINIISMFSDFHPSV" CDS join(2402944..2403380,2452136..2453639) /locus_tag="TCM_026959" /note="paralog of Thecc1EG026954t1" /codon_start=1 /product="Disease resistance protein family" /protein_id="EOY25576.1" /db_xref="Phytozome:GSVIVT01038404001" /db_xref="TAIR:AT1G12220.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B0D1" /translation="MDDVWERVDLIKVGIPVLNQDNVSKLIFTTRFLEVCGKMEAQEK IEVKCLRKDEAWELFEKKVGEETLDSHPDTRGLAQQVAAKCGGLPLALITIGRAMACK KMPQDWKYAIEVLQKFPHKLARMDQQVYSLLKFSYDSLPTDTMRSCLLYCSLYPEDYK IGVIWLIEYWFCEGFLDEFDNISRARMQGYSIINFLCNACLLERCEDAIFVKMHDVIR DMALWIARECEAPEKKFLVRERVKLNTTYDVENWKGVRMSLSYSEIEVLRGTPRCPNL QTLFLNENNLMMISDGLFQFMRNLRVLSLYANFSLCELPKGISNLVSLECLNLSHTGI MELPIELNRLSKLKVLNLHETLQLQKIPRQFICKFSALQVFGMSVLFDICEDLVDEDN VLNGDHEGLIEELKCLQHLNELNIEIRSVVALESLLSCHNLRRCTERLFLRDLSKRKV LDILSLTHMEHLESLIIRFCESMEEIVIRKIEKAPYFHTLKRVSLCSCNNLRDITWLI LAPKLTHLYVVFCSRMEEIISDKVTDVVGIPNPSPFANLEELDLRDLPELKSIYRDAL SFPCLRKIKVFNCSKLENLPLNLDSRNQISIEGYQEWWEKIQWKDEATRKCFLPSFKC AEWWKEVEFQSEYGRYLNCFFW" gene 2403362..2403573 /locus_tag="TCM_027226" /note="dbxref CacaoGD:Thecc1EG027226" mRNA 2403362..2403573 /locus_tag="TCM_027226" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027238t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g798t1" CDS 2403376..2403552 /locus_tag="TCM_027226" /note="paralog of Thecc1EG027238t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25861.1" /translation="MRSCLLYCSLYPEDFFISVNLLIDCWFCEGFLGEFGNISGARMQ GYNIINSLVDACLL" gene 2403928..2405902 /locus_tag="TCM_027227" /note="dbxref CacaoGD:Thecc1EG027227" mRNA join(2403928..2404963,2405768..2405902) /locus_tag="TCM_027227" /product="Disease resistance protein family" /inference="alignment:exonerate- protein:2:TAIR:AT1G61190.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046034t1" /inference="similar to AA sequence:Phytozome:GSVIVT01038404001" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc6132t1" CDS 2404075..2404947 /locus_tag="TCM_027227" /note="paralog of Thecc1EG046034t1" /codon_start=1 /product="Disease resistance protein family" /protein_id="EOY25862.1" /db_xref="Phytozome:GSVIVT01038404001" /db_xref="TAIR:AT1G12290.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BXF7" /translation="MSVLSSYEDEMDEDNVLNSGNEDLLKELKCLAHLDELRIEIKSV FALESLLSFHNLRGCTEQLLLLDFRETKVFNVSCLANMERLESLVVRKCESMEEMVMR KMENEFGEGRMIESSSLFPTNSNRIAPCFHVLSEVSLGGCNKLKNAAWLAFVSTLTKL VVMSCSRMEEIISDQVTNMVAIPNPSPFAKLEKLDLRDLPKLKSICWGALPFPCLRQI RVFNCSKLIKLPLNFDSGNQISIEGYQEWWEEIQWNDEVTRNAFLPSFKRVDWWKDVD WEDEAIIHPTLLFR" mobile_element 2406736..2407875 /note="source:scaffold_6_CACTA_0702 13005 14102" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2407855..2410822 /note="source:CACAO_M_E10603_F306_scaffold_2 4811 7769" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2415551..2424192) /locus_tag="TCM_027229" /note="dbxref CacaoGD:Thecc1EG027229" mRNA complement(join(2415551..2416459,2418080..2418521, 2418606..2419478,2419562..2419897,2419985..2421125, 2422756..2423291,2424117..2424192)) /locus_tag="TCM_027229" /product="TMV resistance protein N, putative" /inference="alignment:exonerate- protein:2:ricco:29841.m002919.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027222t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s04750.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage" CDS complement(join(2416449..2416459,2418080..2418521, 2418606..2419478,2419562..2419897,2419985..2421125, 2422756..2423249)) /locus_tag="TCM_027229" /note="paralog of Thecc1EG027222t1" /codon_start=1 /product="TMV resistance protein N, putative" /protein_id="EOY25863.1" /db_xref="Phytozome:POPTR_0007s04750.1" /db_xref="TAIR:AT5G36930.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RVC7" /translation="MAVSMVQESSSSISQYTYHVFLSFRGADTRKNFTNHLYMALVHA GIHTFRDDDEIERGENIKDEIERALHDSKMSIIVFSKNYASSTWCLNELVKIMEHRKF SKHIVLPIFYDVNPSQVKKQTGSFAEAFARHEESFKYEMDMVQRWRTALREVADLCGM LLEDGYESQFIQDIIKQVQNKLHRTTLYVFPYLVGIDALAAHINWWLRDGSNKVGMAT ICGIGGIGKTTIAKLVYNQNFQRFESYSFLADVRETTQESNGLVQLQRQLISDILKGK ANKIYNLDDGITKIKETICHRRMLFVLDDVDDSKKVTEIVGVQIPFHPGSKIIVTSRH RCLLSDLFIKQMFDLEASSNYGDLCKVFEVKELAFNESLQLFNWYAFRQNDPIESYMD YAKSIVKHCGGLPLALQVLGSSLSSKSINVWRSALEKFKAIPHSKIQKILRISYDSLQ DDHDKNLFLDIACVFIEEDRDYTIKILYGCDYYTVIGIENLINRSLLVINERNKLMMH QMIRDMGRHIIRQESFDLGKRSRLWHKDAFDALREKIGTQTIKCLTIDFQRLLEEKHG KATANHSKNSFLMSNEVHIETNAFAKMQRLKLLQLDYVKLKGDYRDFPKSLIWLCWHG FPQEFLPKDLDISRLVVLEMCNSSLKCVWNDTKYFLPNLKILNLSHSHGLLKILNLSS LHSLERLMLKDCTKLIEVDQSIAEIKTLVVLNLKGCKNLRKLPRTIGSLEYLEELILS GCSTFNDAPRDLQNMKSLRVLNLDGTPIYESNSWLSWLSLKRSEELGFFWASLPCSLV KLSLESCRLSNDVMAVDLSYLPSLKSLNLSRNPIHSLPESIIHLTNLDELLLICCKEL QWLPKLPTSGLRVITSQSLYRISSLPCLLNLKRCIVFGCEKLTEVEGVFKSKPVENFE VEKIKSLFNMDLIRSIKLKIYNYLTDTKMVATTQIFHDGDITSCFVFGNEVPILFESR SKGSKISFSLPQNPGEKVCWLKLCIVYSLVIDEIFEYLPSVQIVNETKKLTWSYFSSF IGIPETNSNTILWLIHWPIMDYQLEHGDLVSCKLSTSGFNVREFGVTCVSKTKVMYED DTPQYSHGVI" mobile_element 2424078..2427635 /note="source:CACAO_M_S_E145422_F88_scaffold_10 1 3590" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2427635..2429533) /note="source:scaffold_6_CACTA_0702 9752 11653" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2429233..2429780) /note="source:INTACT88_F12_scaffold_4-int 11906 12412" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2430051..2430122 /note="source:scaffold_5_CACTA_0596 3777 3847" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2430095..2430213 /note="source:scaffold_5_CACTA_0596 3950 4073" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2430238..2430814) /note="source:scaffold_6_CACTA_0702 8371 8968" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2430868..2432721) /note="source:CACAO_M_S_E5860_F197_scaffold_2 1 1852" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2434548..2434702 /note="source:CACAO_on_E33_A_scaffold_3 7403 7589" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(2438342..2441135) /note="source:CACAO_M_E54_F87_scaffold_1 1 2813" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2446805..2447755 /locus_tag="TCM_027231" /note="dbxref CacaoGD:Thecc1EG027231" mRNA join(2446805..2447005,2447488..2447755) /locus_tag="TCM_027231" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc2591t1" CDS join(2446996..2447005,2447488..2447687) /locus_tag="TCM_027231" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25864.1" /translation="MKRKVQDHQRGNSWDTRKVERLFELVFFHLPMQYVSVASIFSSS LYQWYLFLCHALASNYYILYFIVGC" mobile_element complement(2448885..2448953) /note="source:CACAO_M_S_E5162_F13_scaffold_1 5312 5371" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2449618..2450313 /locus_tag="TCM_027232" /note="dbxref CacaoGD:Thecc1EG027232" mRNA 2449618..2450313 /locus_tag="TCM_027232" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29726.m003945" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017273t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 2449813..2450064 /locus_tag="TCM_027232" /note="paralog of Thecc1EG017273t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25865.1" /translation="MDKLLPGANTDLIRVIKDVLQKEWEVHFMHIYGEGNMVADYLAN YGFVLEESYVVLEQVPTGARKLLMYDMLGVCLSRMIPVQ" mobile_element complement(2455918..2456029) /note="source:CACAO_M_S_E5162_F13_scaffold_1 5144 5219" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2458374..2474554 /locus_tag="TCM_027234" /note="dbxref CacaoGD:Thecc1EG027234" mRNA join(2458374..2460134,2463113..2463355,2474306..2474554) /locus_tag="TCM_027234" /product="NBS-LRR type disease resistance protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038446001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026957t1" /inference="similar to AA sequence:frave:gene04436" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS 2458694..2460118 /locus_tag="TCM_027234" /note="dbxref frave:gene04436; paralog of Thecc1EG026957t1" /codon_start=1 /product="NBS-LRR type disease resistance protein" /protein_id="EOY25866.1" /db_xref="TAIR:AT4G10780.1" /translation="MGNLCSISISTADTIPRCWDCIVGHASYTRKLEDNLKALSVELA KLNARRDDVKRRVDLAEQQRMEPLNQVQLWLSRVQTVGADAEVLINGGTQQIQKLCFG GCFSKNCKSSYNFGKQVTRKLAETVDLKNEGDFERVAEYELTAQVDVRPIEPTVGLEP TLVKVWRLLEENDVGIIGLHGLGGVGKTTLLTQINNNLSSMPMGYDVVIWVVVSKDHT IERVQEKIGEKVGLSIELWKNKSCDEKAIDIFRVLSKKKFVLLLDDLWERVDLIKVGI PVPNQDNGIHMEHLESLIIRFCESMEKIVIRPIDKAPCFHTLSRVSLCSCNNLRDITW LILAPNLTHLFVVFCSRMEEIISDQVTDVVGIPIPSPFAKLEELDLRDLPELKSIYWD ALSFPCLRKIKVFNCSKLKKLPLNLDSGNQISIEGYKEWWEKIQWKDEATRKFFLPSF KCVEWWKEVEFQDEPVQYLHCFFW" mobile_element complement(2460336..2461170) /note="source:CACAO_M_E12347_F245_scaffold_3 2157 2985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2461171..2462855) /note="source:CACAO_Again_on_S_E75_scaffold_2 1889 3545" /mobile_element_type="transposon:TIR/hAT" mobile_element 2461500..2463485 /note="source:scaffold_5_CACTA_0585 7567 9515" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2464363..2464678) /note="source:CACAO_M_E58877_F5_scaffold_9 20413 20735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2464391..2464761 /note="source:CACAO_M_E44210_F112_scaffold_5 10010 10409" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2465472..2467573 /note="source:CACAO_M_E44210_F112_scaffold_5 11254 12917" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2468316..2468389 /note="source:CACAO_on_E33_A_scaffold_3 7607 7679" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 2468844..2468909 /note="source:CACAO_on_E33_A_scaffold_3 7753 7819" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(2469184..2469318) /note="source:CACAO_on_E33_A_scaffold_3 3156 3290" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 2469548..2478321 /locus_tag="TCM_027238" /note="dbxref CacaoGD:Thecc1EG027238" mRNA join(2469548..2469678,2473808..2474387,2474739..2476754, 2476872..2477737,2478121..2478321) /locus_tag="TCM_027238" /product="Cc-nbs-lrr resistance protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G61310.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026954t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s32030.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.18 coverage" mobile_element complement(2471584..2471641) /note="source:CACAO_on_E33_A_scaffold_3 7032 7091" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(2471964..2474510) /locus_tag="TCM_027239" /note="dbxref CacaoGD:Thecc1EG027239" mRNA complement(join(2471964..2472788,2472880..2473048, 2473447..2473585,2474098..2474184,2474308..2474510)) /locus_tag="TCM_027239" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is ortholog weak, intron is none, protein is utrpoor_complete" CDS complement(join(2472760..2472788,2472880..2473048, 2473447..2473585,2474098..2474184,2474308..2474321)) /locus_tag="TCM_027239" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25868.1" /translation="MTSRLVNLGRLLGPSDPFLEAPLNLVHENQPLNKLPSFLLTPSL LKRCIWGLLPVAFFFNPITLFSEATYPVLQFFDPSSGTLWCFKRINSLSTGSSTYVNS LAGYFRPPVERAASNNMGFPITATNNLPAGAPNSGHGDSQMLL" CDS join(2474944..2476754,2476872..2477667) /locus_tag="TCM_027238" /note="paralog of Thecc1EG026954t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative" /protein_id="EOY25867.1" /db_xref="Phytozome:POPTR_0001s32030.1" /db_xref="TAIR:AT4G10780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGA8" /translation="MGNLRSISFSTEDSVCRCWDCIVGQASYTCKLEDNLKALKKELA KLNARRDDVNRRVDLAEQQHMERLNEVQLWLSSVQTVGAEAEELIENGPQEIQKLCSG GCFFKNCKSSYNFGKQVTIKLAEIVDLQKQGDFKIVAENKLAAQVDLKPTEPTVGLEP TLVKVWRLLEEKDAGIVGLYGLGGVGKTTLLTQINKKLSNNLIGYDVVLWVVVSKDHT IQKVQEKIDEKVGLSNELWKNKSCDEKVTDIFRILSKKKFVLLLDDVWERVDLIKVGI PVPNQDNSFKLIFTTRYLEVCAEMGAREKIKVKCLSTYEAWKLFEEKVGEETLDSHPD IRGLAKQVAATCGGLPLALITIGRAMACKKMPQDWKYAIEVLEEFPHKLARMDQQMYS LLKFSYDSLPNDTMRSCLLYCSLHPEDFEINTDGLIDYWFCEGFLGEFDNISRARMQG HNIINSLLNACLLEKGTYAESVMMHDVISDMALWIARVCEAVEKKFLVQAGVRSIKAL DVENWKGVRMSLAYSGIEDIRGTPICPNLQTLFLNTNKLRVISDGFFQFMHNLRVLTL STNWELCELSEEISELVSLECLDLSYTGIRELPIKLNSYDDADEDNVLYGGDKRLIEE LKCLQHLNVLCIELKSVFALDYLLSFHNLRGCTEELHLTRLQETKVLNVLFLANMERL ESLHVAGCDSMEEMAIGKIDKELGEGRMIETSSLFLFNSNPLIPCFHTLSKVYLFSCH NLRNVTWLILAPNLTWLTVLSCSRMEEIISEDANVVEIPNLSPFAKLEVIVLQDLSKL KSIYWDALPFPCLRHITIVNCPKLKKLPLNFESAKGNKISILGNEEWWKEVQWKDEAT RVAFLPYFVCDD" gene 2479248..2484647 /locus_tag="TCM_027240" /note="dbxref CacaoGD:Thecc1EG027240" mRNA join(2479248..2479627,2479698..2479758,2480610..2480980, 2481168..2481259,2481348..2481821,2482880..2484569) /locus_tag="TCM_027240" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017348001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036981t1" /inference="similar to AA sequence:ricco:29841.m002878" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc576t2" mRNA join(2479500..2479583,2479698..2479758,2480610..2480980, 2481168..2481259,2481348..2481821,2482880..2484249) /locus_tag="TCM_027240" /product="Kinase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017348001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036981t1" /inference="similar to AA sequence:ricco:29841.m002878" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g824t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc576t2; inference alignment:Newbler:10:TSA:cgbaP2_g13016t00001" CDS join(2479532..2479627,2479698..2479758,2480610..2480980, 2481168..2481259,2481348..2481821,2482880..2483807) /locus_tag="TCM_027240" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29841.m002878; paralog of Thecc1EG036981t1" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY25869.1" /db_xref="TAIR:AT4G32250.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXE8" /translation="MTGQAEDPSSTKYSIFPGVTSDQTLLDLISPRFQVFGSSSSLAC PNTPLSFTGGMAEQIKASKQVPSFEYELFEGDPDHLRTVVATPTQTKHWINPASLKLK HRIGRGPFGDVWLATHHQSADEFDEYHEVTVKMLHPLKEEHMQKFVDKFEELFLKCRE LQGVCWLHGVSIVNGKICIAMKFYEGSVGDQMARSKGGKLSLPDVLRYGIQLARGLLG LHSMGLLVLNLKPSNFLLNEQNQLFLGDFGIPYLLLGIPLSDSDMVLRLGTPNYMSPE QWEPEVRGPLSLETDIWGFGCSMVEMLTGVQPWFGKSIEEIYHSVVIKKEKPHIPSGL PPAVENVISGCFEYDLRNRPLVSDILLAFESSQTAVNSDGGWIGLGSRPIKEKSVVSG YTTWYLSKDRLQVGDVVRSRSPPNVRKPQTMDIREGTVVGLDNDADKNGFVLVKVPGM HNPLRVQESTLERVTNGLAVGDWVCLKEENNSHSPVGILHLVQRDGTVAVGFIGLETL WIGKSSQLQMAKAYYLGQFVRLKANVFTPRFEWPRKRGGAWATGRISEVLPNGCLVVE FPGRFVLGNEPNRFLADPAEVESVSFDTCPGVVEKYQHVEDFHWAVRPLAIAFALFTA MKLTMSVGCSVSARVKKCRRNGHDGHAGSKSGWRQRIFRDGVTTAGSTR" mRNA join(2479604..2479627,2479704..2479758,2480610..2480980, 2481168..2481259,2481348..2481821,2482880..2484647) /locus_tag="TCM_027240" /product="Kinase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017348001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036981t1" /inference="similar to AA sequence:ricco:29841.m002878" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc576t2; alternateUTRof:Thecc1EG027240t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc576t2; inference alignment:Newbler:10:TSA:cgbaP2_g13016t00001" mRNA join(2479734..2479758,2480645..2480980,2481168..2481259, 2481348..2481821,2482880..2484647) /locus_tag="TCM_027240" /product="Kinase superfamily protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017348001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036981t1" /inference="similar to AA sequence:ricco:29841.m002878" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc576t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc576t2; inference alignment:Newbler:10:TSA:cgbaP2_g13016t00001" CDS join(2480615..2480980,2481168..2481259,2481348..2481821, 2482880..2483807) /locus_tag="TCM_027240" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29841.m002878; paralog of Thecc1EG036981t1" /codon_start=1 /product="Kinase superfamily protein isoform 2" /protein_id="EOY25870.1" /db_xref="TAIR:AT4G32250.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXE8" /translation="MAEQIKASKQVPSFEYELFEGDPDHLRTVVATPTQTKHWINPAS LKLKHRIGRGPFGDVWLATHHQSADEFDEYHEVTVKMLHPLKEEHMQKFVDKFEELFL KCRELQGVCWLHGVSIVNGKICIAMKFYEGSVGDQMARSKGGKLSLPDVLRYGIQLAR GLLGLHSMGLLVLNLKPSNFLLNEQNQLFLGDFGIPYLLLGIPLSDSDMVLRLGTPNY MSPEQWEPEVRGPLSLETDIWGFGCSMVEMLTGVQPWFGKSIEEIYHSVVIKKEKPHI PSGLPPAVENVISGCFEYDLRNRPLVSDILLAFESSQTAVNSDGGWIGLGSRPIKEKS VVSGYTTWYLSKDRLQVGDVVRSRSPPNVRKPQTMDIREGTVVGLDNDADKNGFVLVK VPGMHNPLRVQESTLERVTNGLAVGDWVCLKEENNSHSPVGILHLVQRDGTVAVGFIG LETLWIGKSSQLQMAKAYYLGQFVRLKANVFTPRFEWPRKRGGAWATGRISEVLPNGC LVVEFPGRFVLGNEPNRFLADPAEVESVSFDTCPGVVEKYQHVEDFHWAVRPLAIAFA LFTAMKLTMSVGCSVSARVKKCRRNGHDGHAGSKSGWRQRIFRDGVTTAGSTR" CDS join(2480615..2480980,2481168..2481259,2481348..2481821, 2482880..2483807) /locus_tag="TCM_027240" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29841.m002878; paralog of Thecc1EG036981t1" /codon_start=1 /product="Kinase superfamily protein isoform 2" /protein_id="EOY25871.1" /db_xref="TAIR:AT4G32250.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXE8" /translation="MAEQIKASKQVPSFEYELFEGDPDHLRTVVATPTQTKHWINPAS LKLKHRIGRGPFGDVWLATHHQSADEFDEYHEVTVKMLHPLKEEHMQKFVDKFEELFL KCRELQGVCWLHGVSIVNGKICIAMKFYEGSVGDQMARSKGGKLSLPDVLRYGIQLAR GLLGLHSMGLLVLNLKPSNFLLNEQNQLFLGDFGIPYLLLGIPLSDSDMVLRLGTPNY MSPEQWEPEVRGPLSLETDIWGFGCSMVEMLTGVQPWFGKSIEEIYHSVVIKKEKPHI PSGLPPAVENVISGCFEYDLRNRPLVSDILLAFESSQTAVNSDGGWIGLGSRPIKEKS VVSGYTTWYLSKDRLQVGDVVRSRSPPNVRKPQTMDIREGTVVGLDNDADKNGFVLVK VPGMHNPLRVQESTLERVTNGLAVGDWVCLKEENNSHSPVGILHLVQRDGTVAVGFIG LETLWIGKSSQLQMAKAYYLGQFVRLKANVFTPRFEWPRKRGGAWATGRISEVLPNGC LVVEFPGRFVLGNEPNRFLADPAEVESVSFDTCPGVVEKYQHVEDFHWAVRPLAIAFA LFTAMKLTMSVGCSVSARVKKCRRNGHDGHAGSKSGWRQRIFRDGVTTAGSTR" CDS join(2480855..2480980,2481168..2481259,2481348..2481821, 2482880..2483807) /locus_tag="TCM_027240" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29841.m002878; paralog of Thecc1EG036981t1" /codon_start=1 /product="Kinase superfamily protein, putative isoform 4" /protein_id="EOY25872.1" /db_xref="TAIR:AT4G32250.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXE8" /translation="MLHPLKEEHMQKFVDKFEELFLKCRELQGVCWLHGVSIVNGKIC IAMKFYEGSVGDQMARSKGGKLSLPDVLRYGIQLARGLLGLHSMGLLVLNLKPSNFLL NEQNQLFLGDFGIPYLLLGIPLSDSDMVLRLGTPNYMSPEQWEPEVRGPLSLETDIWG FGCSMVEMLTGVQPWFGKSIEEIYHSVVIKKEKPHIPSGLPPAVENVISGCFEYDLRN RPLVSDILLAFESSQTAVNSDGGWIGLGSRPIKEKSVVSGYTTWYLSKDRLQVGDVVR SRSPPNVRKPQTMDIREGTVVGLDNDADKNGFVLVKVPGMHNPLRVQESTLERVTNGL AVGDWVCLKEENNSHSPVGILHLVQRDGTVAVGFIGLETLWIGKSSQLQMAKAYYLGQ FVRLKANVFTPRFEWPRKRGGAWATGRISEVLPNGCLVVEFPGRFVLGNEPNRFLADP AEVESVSFDTCPGVVEKYQHVEDFHWAVRPLAIAFALFTAMKLTMSVGCSVSARVKKC RRNGHDGHAGSKSGWRQRIFRDGVTTAGSTR" mRNA join(2480951..2481087,2481168..2481259,2481348..2481821, 2482880..2484647) /locus_tag="TCM_027240" /product="Kinase superfamily protein, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017348001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036981t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017348001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc590t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc576t2; inference alignment:Newbler:10:TSA:cgbaP2_g13016t00001" CDS join(2481180..2481259,2481348..2481821,2482880..2483807) /locus_tag="TCM_027240" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG036981t1" /codon_start=1 /product="Kinase superfamily protein, putative isoform 5" /protein_id="EOY25873.1" /db_xref="Phytozome:GSVIVT01017348001" /db_xref="TAIR:AT4G32250.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXE8" /translation="MKFYEGSVGDQMARSKGGKLSLPDVLRYGIQLARGLLGLHSMGL LVLNLKPSNFLLNEQNQLFLGDFGIPYLLLGIPLSDSDMVLRLGTPNYMSPEQWEPEV RGPLSLETDIWGFGCSMVEMLTGVQPWFGKSIEEIYHSVVIKKEKPHIPSGLPPAVEN VISGCFEYDLRNRPLVSDILLAFESSQTAVNSDGGWIGLGSRPIKEKSVVSGYTTWYL SKDRLQVGDVVRSRSPPNVRKPQTMDIREGTVVGLDNDADKNGFVLVKVPGMHNPLRV QESTLERVTNGLAVGDWVCLKEENNSHSPVGILHLVQRDGTVAVGFIGLETLWIGKSS QLQMAKAYYLGQFVRLKANVFTPRFEWPRKRGGAWATGRISEVLPNGCLVVEFPGRFV LGNEPNRFLADPAEVESVSFDTCPGVVEKYQHVEDFHWAVRPLAIAFALFTAMKLTMS VGCSVSARVKKCRRNGHDGHAGSKSGWRQRIFRDGVTTAGSTR" gene 2484847..2489109 /locus_tag="TCM_027241" /note="dbxref CacaoGD:Thecc1EG027241" mRNA join(2484847..2485146,2485238..2485328,2485417..2485622, 2485812..2485870,2485957..2486013,2486109..2486143, 2486579..2486682,2486798..2486873,2486965..2487023, 2487164..2487229,2487329..2487412,2487605..2487669, 2487868..2487950,2488055..2488145,2488361..2488410, 2488495..2488635,2488731..2489109) /locus_tag="TCM_027241" /product="Alpha-galactosidase 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G08370.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007627t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034334001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1010t4" CDS join(2485444..2485622,2485812..2485870,2485957..2486013, 2486109..2486143,2486579..2486682,2486798..2486873, 2486965..2487023,2487164..2487229,2487329..2487412, 2487605..2487669,2487868..2487950,2488055..2488145, 2488361..2488410,2488495..2488635,2488731..2488817) /locus_tag="TCM_027241" /note="paralog of Thecc1EG007627t1" /codon_start=1 /product="Alpha-galactosidase 2" /protein_id="EOY25874.1" /db_xref="Phytozome:GSVIVT01034334001" /db_xref="TAIR:AT5G08370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P14749" /translation="MAHSLPSSRFSAFFCCILLLLLISSATVSGARLGNARLTDSSSI RRILLNNGLGLTPQMGWNSWNRFHCNINETLIKETADAMVSSGLAALGYTYINLDDCW GELNRDTQGNLVPKASTFPSGIKALADYVHSKGLKLGIYADAGTQTCSKTMPGSLGYE EQDAKTFASWGVDYLKYDNCANTGISPKERYPKMSKALLSSGRTMFFSLCEWGNEDPA TWAPSIGNSWRTTGDIKDNWDRMTSIADQNDKWASYAQPGSWNDPDMLEVGNGGMTTE EYRSHFSIWSLAKAPLLIGCDIRSMDNVTFELLSNKEVIAVNQDKLGVQGKKVKKDGD LEVWAGPLTDNRVAVVLWNRGSSSANITAYWSDIGLKPSTVCDVQHLWAHSTELSVQD QLSAQVDAHACRMYTITPR" gene 2489638..2492506 /locus_tag="TCM_027242" /note="dbxref CacaoGD:Thecc1EG027242" mRNA join(2489638..2489733,2490143..2490276,2490902..2491421, 2491723..2492506) /locus_tag="TCM_027242" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017348001" /inference="similar to AA sequence:frave:gene15725" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g761t1" CDS join(2489705..2489733,2490143..2490276,2490902..2491421, 2491723..2492101) /locus_tag="TCM_027242" /note="dbxref frave:gene15725" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25875.1" /db_xref="TAIR:AT1G15320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RV88" /translation="MQGTASKSPLNYYEENDGGEQKETGTKLKEKEVGNEIDEISDRF QRTKRETSKRELSWAKHGLWRQEQKSRAAKLEKQLKARRELEVLIEEQLNRFHAHYNH AMAPSYLEDVSQLLMPQCVAPQELAIISWLGDWRPSAILELLHGLALSSFLSDSIDME HVLSQIVHEIRIEEAVIDEEMAEIQATCVLHLPFAPVKSSKSGGSALPDIRVEFKKIA RVVTKAQKLRFKALELVVKKVLNQTDAAKFLVTLSGIQDAIHQFAEHQRLRKGPVTLS VKPPDVVETSKQLKIRLEDRISFWEKTILSSEQERSGQGIQDAIYQFEKQQGLRTGPI TLSVKSQDVGETSKQPNIH" gene complement(2493054..2494812) /locus_tag="TCM_027244" /note="dbxref CacaoGD:Thecc1EG027244" mRNA complement(join(2493054..2494299,2494608..2494812)) /locus_tag="TCM_027244" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.26 coverage" CDS complement(2493984..2494295) /locus_tag="TCM_027244" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25876.1" /translation="MGTTNLSGTTLGRSCLHATYIARASHTVYWETFVKKHIRDWDAC QKGRCLYSSEFAQGAKGPRDIYGLWPMARASQPHQGSRMITTIFICREKKSKEMWSGP L" mobile_element complement(2495195..2495588) /note="source:CACAO_Mariner_E176_scaffold_6 3704 4137" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 2501081..2503986 /note="source:CACAO_M_E44346_F86_scaffold_6 1 2906" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2511983..2518008 /locus_tag="TCM_027245" /note="dbxref CacaoGD:Thecc1EG027245" mRNA join(2511983..2512273,2512402..2512512,2513789..2513881, 2514888..2515037,2515144..2515202,2515693..2515771, 2517619..2518008) /locus_tag="TCM_027245" /product="Adenine phosphoribosyl transferase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017349001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036979t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s01860.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15551t1" mRNA join(2511988..2512273,2512402..2512512,2513789..2513881, 2514888..2515037,2515141..2515202,2515693..2515771, 2517619..2517983) /locus_tag="TCM_027245" /product="Adenine phosphoribosyl transferase 2 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene02559" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017349001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036979t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s01860.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g875t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15551t1" CDS join(2512171..2512273,2512402..2512512,2513789..2513881, 2514888..2515037,2515141..2515202,2515693..2515771, 2517619..2517671) /locus_tag="TCM_027245" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG036979t1" /codon_start=1 /product="Adenine phosphoribosyl transferase 2 isoform 2" /protein_id="EOY25878.1" /db_xref="Phytozome:POPTR_0018s01860.1" /db_xref="TAIR:AT5G11160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BI88" /translation="MEKMFAGDQNGLQGDPRLKAISEAIRVVPHFPKPGIMFQDITTL LLDHKCFKDTVDIFVDRYRDMAISVVAGVEARGFMFGPSVALAIGAKFVPLRKPRKLP GEVISEAYVLEYGTDCLEMHVGAVQPGERALVIDDLVATGGTLSAAIRLLVERVGAEV VECACVVGLREVKGQHRLNGKPLYILVEPRQQTNCSAPSVNGVETCRRDDVYLSAT" CDS join(2512171..2512273,2512402..2512512,2513789..2513881, 2514888..2515037,2515144..2515202,2515693..2515771, 2517619..2517671) /locus_tag="TCM_027245" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG036979t1" /codon_start=1 /product="Adenine phosphoribosyl transferase 2 isoform 1" /protein_id="EOY25877.1" /db_xref="Phytozome:POPTR_0018s01860.1" /db_xref="TAIR:AT5G11160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BI88" /translation="MEKMFAGDQNGLQGDPRLKAISEAIRVVPHFPKPGIMFQDITTL LLDHKCFKDTVDIFVDRYRDMAISVVAGVEARGFMFGPSVALAIGAKFVPLRKPRKLP GEVISEAYVLEYGTDCLEMHVGAVQPGERALVIDDLVATGGTLSAAIRLLERVGAEVV ECACVVGLREVKGQHRLNGKPLYILVEPRQQTNCSAPSVNGVETCRRDDVYLSAT" gene 2519375..2523967 /locus_tag="TCM_027247" /note="dbxref CacaoGD:Thecc1EG027247" mRNA join(2519375..2519793,2520841..2520982,2521778..2522007, 2523081..2523254,2523399..2523967) /locus_tag="TCM_027247" /product="Ubiquitin system component Cue protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G80040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021124t1" /inference="similar to AA sequence:frave:gene15725" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15563t1" CDS join(2519611..2519793,2520841..2520982,2521778..2522007, 2523081..2523254,2523399..2523485) /locus_tag="TCM_027247" /note="dbxref frave:gene15725; paralog of Thecc1EG021124t1" /codon_start=1 /product="Ubiquitin system component Cue protein, putative" /protein_id="EOY25879.1" /db_xref="TAIR:AT5G32440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HA90" /translation="MSAAVCGSKRSFFEDIPSSPSASVSKKLRRCSPSSPSSVRFPPP PSSLAHLEALFPHMDPELLERALLECGNDIDTAVKRLQELCLGAAEATGERSGPVEEL GATAELCTLTNDGEATATVPVQNPSAPEKLPVDGAEWVDLFVREMMSATSVDDAKARA FKLLEVLENSISRSAAEEAAQNFHKENIMLKEQIEVLIQENTVLKRAVAIQHERQKEY QDKNHELQHLKQLVSQYQEQLRTLEVNNYALTMHLRQAQQSNSIPGRFHPDVF" gene 2524065..2535028 /locus_tag="TCM_027249" /note="dbxref CacaoGD:Thecc1EG027249" mRNA join(2524065..2524776,2525948..2526016,2527285..2527377, 2527845..2527966,2529203..2529398,2530240..2530415, 2531355..2531484,2532019..2532179,2532834..2532925, 2533189..2533285,2534044..2535028) /locus_tag="TCM_027249" /product="Molecular chaperone Hsp40/DnaJ family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29841.m002883" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001085t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017355001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:PASA:2:TSA:puevd3b026353t1a2; alternateUTRof:Thecc1EG027249t1; inference alignment:Newbler:10:TSA:cgbaB_g00430t00003" mRNA join(2524065..2524776,2525948..2526016,2527285..2527377, 2527845..2527966,2529203..2529398,2530240..2530415, 2531355..2531484,2532019..2532179,2532834..2532925, 2533189..2533285,2534044..2534106,2534180..2534251, 2534378..2534408,2534702..2535028) /locus_tag="TCM_027249" /product="Molecular chaperone Hsp40/DnaJ family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29841.m002883" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001085t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017355001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00430t00003" mRNA join(2524065..2524776,2525948..2526016,2527285..2527377, 2527845..2527966,2529203..2529398,2530240..2530415, 2531355..2531484,2532019..2532179,2532834..2532925, 2534044..2535028) /locus_tag="TCM_027249" /product="Molecular chaperone Hsp40/DnaJ family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29841.m002883" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001085t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017355001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b026353t1a3; inference alignment:Newbler:10:TSA:cgbaB_g00430t00003" CDS join(2524441..2524776,2525948..2526016,2527285..2527377, 2527845..2527966,2529203..2529398,2530240..2530415, 2531355..2531484,2532019..2532179,2532834..2532925, 2533189..2533285,2534044..2534089) /locus_tag="TCM_027249" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG001085t1" /codon_start=1 /product="Molecular chaperone Hsp40/DnaJ family protein isoform 1" /protein_id="EOY25880.1" /db_xref="Phytozome:GSVIVT01017355001" /db_xref="TAIR:AT1G80030.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6K850" /translation="MAATTSLSLLPSSLSFPTERPSNASQSSSSSSSSSCSVFFNGGT RLRSHDSFACVSSSPFSTCSWRLNNGRVGAYRFGTVVAASGDYYATLGIPKSASSKEI KAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRALYDQYGEAGVKSAVGG QSSAYTTNPFDLFETFFGPSMGGFPGMDQSGFRTGRRSTVTKGDDVRYDITLQFSEAI FGAEKEFELSHLETCEVCLGTGSKVGSRMRICSTCGGRGQVMRTEQTPFGLFSQVSVC PNCGGDGEVISEYCRKCSGKGRIRVKKNIKVKVPPGVSTGSILRVAGEGDAGPRGGPP GDLYVYLDVEEVAGIQRDGINLSSTVSISYLDAILGSVVKVKTVEGVTELQIPPGTQP GEVLVLARKGAPKLNKPSIRGDHLFTIKVTIPNRISAKERELLEELASLSNTTSSRSR TRPRTQPATKTTESKVGKDVEKTEEPADQNDPWTKLKAFAGSVANGALKWLKGNL" CDS join(2524441..2524776,2525948..2526016,2527285..2527377, 2527845..2527966,2529203..2529398,2530240..2530415, 2531355..2531484,2532019..2532179,2532834..2532925, 2533189..2533285,2534044..2534089) /locus_tag="TCM_027249" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG001085t1" /codon_start=1 /product="Molecular chaperone Hsp40/DnaJ family protein isoform 1" /protein_id="EOY25881.1" /db_xref="Phytozome:GSVIVT01017355001" /db_xref="TAIR:AT1G80030.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6K850" /translation="MAATTSLSLLPSSLSFPTERPSNASQSSSSSSSSSCSVFFNGGT RLRSHDSFACVSSSPFSTCSWRLNNGRVGAYRFGTVVAASGDYYATLGIPKSASSKEI KAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRALYDQYGEAGVKSAVGG QSSAYTTNPFDLFETFFGPSMGGFPGMDQSGFRTGRRSTVTKGDDVRYDITLQFSEAI FGAEKEFELSHLETCEVCLGTGSKVGSRMRICSTCGGRGQVMRTEQTPFGLFSQVSVC PNCGGDGEVISEYCRKCSGKGRIRVKKNIKVKVPPGVSTGSILRVAGEGDAGPRGGPP GDLYVYLDVEEVAGIQRDGINLSSTVSISYLDAILGSVVKVKTVEGVTELQIPPGTQP GEVLVLARKGAPKLNKPSIRGDHLFTIKVTIPNRISAKERELLEELASLSNTTSSRSR TRPRTQPATKTTESKVGKDVEKTEEPADQNDPWTKLKAFAGSVANGALKWLKGNL" CDS join(2524441..2524776,2525948..2526016,2527285..2527377, 2527845..2527966,2529203..2529398,2530240..2530415, 2531355..2531484,2532019..2532179,2532834..2532925, 2534044..2534075) /locus_tag="TCM_027249" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG001085t1" /codon_start=1 /product="Molecular chaperone Hsp40/DnaJ family protein isoform 4" /protein_id="EOY25882.1" /db_xref="Phytozome:GSVIVT01017355001" /db_xref="TAIR:AT1G80030.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6K850" /translation="MAATTSLSLLPSSLSFPTERPSNASQSSSSSSSSSCSVFFNGGT RLRSHDSFACVSSSPFSTCSWRLNNGRVGAYRFGTVVAASGDYYATLGIPKSASSKEI KAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRALYDQYGEAGVKSAVGG QSSAYTTNPFDLFETFFGPSMGGFPGMDQSGFRTGRRSTVTKGDDVRYDITLQFSEAI FGAEKEFELSHLETCEVCLGTGSKVGSRMRICSTCGGRGQVMRTEQTPFGLFSQVSVC PNCGGDGEVISEYCRKCSGKGRIRVKKNIKVKVPPGVSTGSILRVAGEGDAGPRGGPP GDLYVYLDVEEVAGIQRDGINLSSTVSISYLDAILGSVVKVKTVEGVTELQIPPGTQP GEVLVLARKGAPKLNKPSIRGDHLFTIKVTIPNRISAKERELLEELASLSNTTSSRSR TRPRTQPASLLQMVLLNG" gene 2535075..2537688 /locus_tag="TCM_027251" /note="dbxref CacaoGD:Thecc1EG027251" mRNA join(2535075..2537391,2537501..2537688) /locus_tag="TCM_027251" /product="Tetratricopeptide repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:ricco:27660.m000082" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038026t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s12050.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc788t1" CDS 2535297..2536916 /locus_tag="TCM_027251" /note="paralog of Thecc1EG038026t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein" /protein_id="EOY25883.1" /db_xref="Phytozome:POPTR_0008s12050.1" /db_xref="TAIR:AT1G13410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVP2" /translation="MGIAQKVFDKIPERNTALWNSLIKGYAQNGFYEKVIFLFSQMKS MGFSLPNGFTFPIVLKCCFKCNALREGAEVHCVVIKSGFRGNPFVGTTLIEMYSGWRM TAAAYIVFSEMVDRNVVAWTSMINGFILSHDLVKARFLFELAPERDIVLWNTMVSGYI EIGDMVEARNLFDQMLKKDVMAWNTILHGYAINRDVAACERFFEEMPERNVFSWNGLI GGYARNECFVEVLDTFKRMLIDGNVLPNDATLVTVLSACAKLGALDLGKWVHVYAENN GYKGNVYVGNALIDLYAKCGMIKNAVDMFKSMDKKDLISWNTIIGGLAMHGHGADALD LFYQMKNGGMNPDGITFIGVLCACTHMGLVEDGISYFLSMVDDYSIQPQIEHYGCMVD LLARAGLLPQALDFVKKMPMEADAVIWAALLGACRVYKNVEFAELALEHLITLEPKNP VNFVMLANIYGDLGRWKDVARLKVAMRDTGRKKLPGCSLIEVNDGVVEFYSLDERHPE TKEIYGALRGLTKLLRSCGYIPDLQELGQGG" gene complement(2537943..2538720) /locus_tag="TCM_027252" /note="dbxref CacaoGD:Thecc1EG027252" mRNA complement(2537943..2538720) /locus_tag="TCM_027252" /product="F-box family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046272t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(2538094..2538636) /locus_tag="TCM_027252" /note="paralog of Thecc1EG046272t1" /codon_start=1 /product="F-box family protein" /protein_id="EOY25884.1" /translation="MEGIFGSGMQAQVHTLGMNSWREVAMSQGVDFGAIHWLGMVEKN RNAMQVELVSFDVSTEAFKLFPLPDFALREIWPMWIDVYKNSHCVVKPGEGAFYEIWV MEEYGVQESWTRLHAIQLSLSHPLWFLGMGVNGKFVLENLTGPTVYDPNNEEIKNVEF DHPEVSWFTIVTYIESMVSP" mobile_element 2540694..2540772 /note="source:CACAO_Mutator_E592_scaffold_3 7631 7709" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2540704..2540891) /note="source:CACAO_Mutator_E592_scaffold_3 20174 20361" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2541870..2541948 /note="source:CACAO_Mutator_E592_scaffold_3 7631 7709" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2541880..2544800) /note="source:CACAO_Mutator_E592_scaffold_3 17108 20361" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2544795..2545200 /note="source:CACAO_Mutator_E1744_scaffold_8 2751 3152" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2545184..2548050) /note="source:CACAO_Mutator_E592_scaffold_3 13140 16029" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2548043..2549461) /note="source:CACAO_Mutator_E592_scaffold_3 11413 12827" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2549462..2549599) /note="source:CACAO_M_S_E17777_F2_scaffold_3 11777 11913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2549611..2549756) /note="source:CACAO_M_S_E17777_F2_scaffold_3 11427 11567" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2549755..2551606) /note="source:CACAO_Mutator_E592_scaffold_3 9337 11165" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2551590..2551732) /note="source:CACAO_Mutator_E592_scaffold_3 17088 17243" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2551733..2554661 /note="source:INTACT183F_F349_scaffold_3-int 7836 10750" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2554662..2554919) /note="source:CACAO_Mutator_E592_scaffold_3 16834 17092" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2554915..2560234) /note="source:CACAO_Mutator_E592_scaffold_3 4057 9303" /mobile_element_type="transposon:TIR/Mutator" gene 2561118..2563753 /locus_tag="TCM_027256" /note="dbxref CacaoGD:Thecc1EG027256" mRNA join(2561118..2561334,2561410..2561485,2561583..2561846, 2562171..2562440,2562543..2563130,2563247..2563753) /locus_tag="TCM_027256" /product="Transducin family protein / WD-40 repeat family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025065t1" /inference="similar to AA sequence:Phytozome:Glyma01g43980.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g805t1" CDS join(2561435..2561485,2561583..2561846,2562171..2562440, 2562543..2563130,2563247..2563387) /locus_tag="TCM_027256" /note="paralog of Thecc1EG025065t1" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein" /protein_id="EOY25885.1" /db_xref="Phytozome:Glyma01g43980.1" /db_xref="TAIR:AT4G33270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K2T7" /translation="MNALQQLILQRTDTQDDLDRFIPNRSAMDFDYAHYMLTQGRKII EKTDNIRSPCTEAYQKRLAEALNMNQTRILAFKNKRPMSGRDMIRSEMGSQPAKKRRY ISQTSERTLDAPEILDDFSLNLLDWGCNNVLAIALNDIVYLWDASNGSASELVTINSE DGPITSVSWAPDGQHIAIGLNNSHVQLWDCQVKRQLRTLRGGHRHGTRVNALAWNNHI LTTGGMDARVINNDVRVREHTVECYMGHQLEVCSLKWSSSGQQLASGGNDNLLFIWDR FMASSNSRTQWLHKLDDHTAAVKALAWCPFQRNLLASGGSRSDQCIRFWNTHTGACLN SVDTGSEVCALLWNKHERELLSSHGFPDNQLILWKYPSMKKMAELLGHKSRALYMAES PNGCTVATAAGDERLQFWNVFGTPEVAISAAKLEPEPFANISRIR" gene complement(2564541..2566794) /locus_tag="TCM_027257" /note="dbxref CacaoGD:Thecc1EG027257" mRNA complement(join(2564541..2565244,2566098..2566469, 2566588..2566794)) /locus_tag="TCM_027257" /product="Uv-b-insensitive 4, putative" /inference="alignment:exonerate- protein:2:ricco:29216.m000259" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024844t1" /inference="similar to AA sequence:ricco:29216.m000259" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc910t5" CDS complement(join(2564867..2565244,2566098..2566469, 2566588..2566767)) /locus_tag="TCM_027257" /note="dbxref ricco:29216.m000259; paralog of Thecc1EG024844t1" /codon_start=1 /product="Uv-b-insensitive 4, putative" /protein_id="EOY25886.1" /db_xref="TAIR:AT2G42260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O48533" /translation="MHVHLETPFPLQYSPFFNWKTLPNSPLPQATKLSLSPFVLCRET LRHRQTLSRKPHFFQKLDPYAMAEPRDRITRAVDMAQVFARSRSGPLGILSDESRELL GSPVQRAVTRRPMGVAVNTSDGGLRRGSSFGAPRSGIRSSRNLYPGKENTPVSVTALG RGRGSVLPSWYARTPLRDITAVVRAIQRRRARVGEGEGQILESPVLRDESVLNSNLSS ATQLKHNFSAPATTARMKPCPLSVHNVSKILLNVNNQNAEESEILTPQKKLLNSIDTV EKAVLEELQKMKRTPTAKKAERQKKVRTLMSMR" gene complement(2566876..2575007) /locus_tag="TCM_027258" /note="dbxref CacaoGD:Thecc1EG027258" mRNA complement(join(2566876..2567935,2568163..2568535, 2570971..2571916,2573710..2574044,2574174..2575007)) /locus_tag="TCM_027258" /product="F-box family protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage" CDS complement(join(2567586..2567935,2568163..2568535, 2570971..2571916,2573710..2574044,2574174..2574728)) /locus_tag="TCM_027258" /codon_start=1 /product="F-box family protein" /protein_id="EOY25887.1" /db_xref="TAIR:AT3G06240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLT5" /translation="MKLWYLCFFFKFTLRSYKSSSETETIMVAGNLPSDLIIEILSRL PVKSLLRFRCVHITWLCLLKSSYFITKHVQNPNNKDHEFLFIQYRDVSGISRYKLLTR DTSEVSLDLRIPFPSWESVVGSCNGLVCLYIDHPFPCTKILLYNPALRVQKIIPESTL SRPESGRLHHVTLGLGYDSVNNDYKVYGPQAFLNGAIHWLGMVCKNKKITQVIVSFDV STEVFKLFPLPDFVLRERWVTWIDVYKNLLCVVKTEDGAYYEIWAMEEYGVPELWTRL HAIQLSLSYPLRFLGLGMNGKCVHKTWLCLLKSSYFITKHLQNPNNKDHAFVFVKYTD ASDMSRFKLLTHDTLEVSLDLGLPFPRWDTVVGSCNGLVCLYIDHHFPRTKIMLYNPA LRVHKIIPESTLPGPESRSVGHVFLGFGYDSVNNDYKVVRVVSLNCHKEGKLVSSVKA EVYTLGVNSWREVAIPPGVNFGLYKPQVFLNGAIHWLGMVEKNRNAIKVLVSFDVSTE VFNLIPLPVFAQREIWPMWIDVYKNSLCVVKTAEGPCYEIWVMKEFGVQESWIRLHAI QLSLSNQPWPLGLGMNGKLVMQNLTGLTVYDPNTEEIKNVEFDHPVNPNNKDRGLVFV NAKFPGDALGKSRFRLLADDTLEVSLDLRIPFPWWDNVVGSYNGLVCFCDIDHLLMRT KILLYSPALRVHKIIPESPFSRPKNGCFGPVSLGFGYDSINNVYKVAMIVSMHYDFVL RNRCLRWIDVHRNFPCVIKPEEGQCYEIWVMEEYGVQESWTRLHAIQLFSLSHPLRFL GLGMNGRLVFENLENHRELTVYYPENKKLKNVELDNSKVDLLTVGTYIESLVAL" gene complement(2575281..2577103) /locus_tag="TCM_027259" /note="dbxref CacaoGD:Thecc1EG027259" mRNA complement(join(2575281..2576216,2576312..2576522, 2576801..2577103)) /locus_tag="TCM_027259" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage" CDS complement(join(2575918..2576216,2576312..2576522, 2576801..2577019)) /locus_tag="TCM_027259" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25888.1" /translation="MAAAGNLLEDLMTDILSRVAVKSLLRFRCVHKTWYSFFKSSSFI ITHYQNPNNNGHGFGFVFVKFLEYETRVQVVRVVRWHDYLEGQGYRQAEVYTLGMNSW RKVGSPDMNVDHWIHQAYLNGAIHWLGHQNKRSCGVRFDVSKRVTRGDDIWYDIWLVR EYGVEESWIRLHAIQLFSSHDVPRQFLGFGINRESLLGNYQGLTVFDPDKEELKSIEF NRYVGFSSVVTCVESLVFLKGGNE" gene complement(2578059..2579686) /locus_tag="TCM_027260" /note="dbxref CacaoGD:Thecc1EG027260" mRNA complement(join(2578059..2578415,2579355..2579686)) /locus_tag="TCM_027260" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene15721" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02974t00002; inference alignment:Newbler:10:TSA:cgbaP2_g02974t00001" mRNA complement(join(2578059..2578443,2579355..2579623)) /locus_tag="TCM_027260" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene15721" /inference="similar to AA sequence:Phytozome:GSVIVT01017356001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02974t00001" CDS complement(join(2578258..2578443,2579355..2579588)) /locus_tag="TCM_027260" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25889.1" /db_xref="Phytozome:GSVIVT01017356001" /translation="MAASAVASGSPKLCYSTPSHCPLYPATKLKGTAKFLVDAKFCSS TTSFQRSFPIRAVDSQAEEENPSLDEPNAGFIPQEDFNYLWKLGAGSAIGAAIIKYGS ILFPEITRPNILQALIMISAPVIIAVLLLIKQSRLEQ" CDS complement(join(2578265..2578415,2579355..2579680)) /locus_tag="TCM_027260" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY25890.1" /translation="MEKQAKESKPGVKFTRFTYLFSPHQSALNKKWQLQPWQADPRSS ATPPQVTAHYIPLLSSKAQQSFSSTPNSALQPPPFNAHFPFELLIPKQRKKIQAWMNP MLVSSLRSWFCYRCSYNKVWKHPFSRDYQTKHLTGFDHDISTSYYCCFIVDKAKSS" mobile_element 2580000..2580040 /note="source:INTACT415F_F22_scaffold_4-int 2203 2243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2580427..2580505 /note="source:scaffold_8_CACTA_0867 7820 7909" /mobile_element_type="transposon:TIR/CACTA" gene complement(2580535..2582050) /locus_tag="TCM_027261" /note="dbxref CacaoGD:Thecc1EG027261" mRNA complement(join(2580535..2581399,2581462..2582050)) /locus_tag="TCM_027261" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.70 coverage" CDS complement(2581114..2581386) /locus_tag="TCM_027261" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25891.1" /translation="MFGLCFIQGKVIPLRSHYNPSSHRGEVIFPLQRVTYIFFFLTVP PITSTFAIFSSSSASSSHHSPGHFDQALSSIFCCGQLWFQNHLQSL" gene complement(2582727..2583819) /locus_tag="TCM_027262" /note="dbxref CacaoGD:Thecc1EG027262" mRNA complement(join(2582727..2582855,2583650..2583819)) /locus_tag="TCM_027262" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g820t1" CDS complement(join(2582790..2582855,2583650..2583742)) /locus_tag="TCM_027262" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25892.1" /translation="MVFSFFSTTMLLDFCLAIWVFLPTIFLQDFCRSCRTSKEENSLI FVGIIHCY" mobile_element 2585199..2585263 /note="source:CACAO_Mutator_E592_scaffold_3 19536 19600" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2585353..2589900 /note="source:CACAO_M_E57291_F76_scaffold_8 1 4549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2589901..2593738 /note="source:CACAO_LINE_E_154_scaffold_6 1 3838" /mobile_element_type="retrotransposon:LINE/L1" gene 2591665..2600419 /locus_tag="TCM_027264" /note="dbxref CacaoGD:Thecc1EG027264" mRNA join(2591665..2591854,2595640..2595997,2596425..2596524, 2596670..2596823,2597395..2597545,2597642..2597790, 2597923..2598023,2598136..2598293,2599416..2599530, 2599649..2600419) /locus_tag="TCM_027264" /product="Signal recognition particle, SRP54 subunit protein" /inference="alignment:exonerate- protein:2:ricco:29841.m002885" /inference="similar to AA sequence:ricco:29841.m002885" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1012t2" mobile_element 2593737..2594947 /note="source:CACAO_M_S_E66657_F76_scaffold_5 7309 8525" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(2595767..2595997,2596425..2596524,2596670..2596823, 2597395..2597545,2597642..2597790,2597923..2598023, 2598136..2598293,2599416..2599530,2599649..2599974) /locus_tag="TCM_027264" /note="dbxref ricco:29841.m002885" /codon_start=1 /product="Signal recognition particle, SRP54 subunit protein" /protein_id="EOY25893.1" /db_xref="TAIR:AT1G48900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P49966" /translation="MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQSDV QFKLVRDMQTNIKKIVNLDDLAAGHNKRKIIQQAIFNELCKMLDPGKPSFTPKKGKTS VVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY GSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVI FVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTG EHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMY EQFQNILKMGPIGQVFSMLPGFSAELMPKGREKESQAKIKRYMTMMDSMTNEELDSPN PKLMNESRMMRIARGSGRHIREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNM NAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGMFGGGE" gene complement(2600497..2609102) /locus_tag="TCM_027265" /note="dbxref CacaoGD:Thecc1EG027265" mRNA complement(join(2600497..2600955,2601314..2601573, 2602158..2602376,2603316..2603558,2603648..2603812, 2605292..2606061,2606196..2606304,2606750..2606836, 2606947..2607045,2607904..2608014,2608703..2609083)) /locus_tag="TCM_027265" /product="Phox domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29841.m002886" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036978t3" /inference="similar to AA sequence:ricco:29841.m002886" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc156t1; alternateUTRof:Thecc1EG027265t1; inference alignment:Newbler:10:TSA:cgbaB_g04380t00001" mRNA complement(join(2600600..2600960,2601314..2601573, 2602158..2602376,2603316..2603558,2603648..2603812, 2605292..2606061,2606196..2606304,2606750..2606836, 2606947..2607045,2607904..2608014,2608703..2609102)) /locus_tag="TCM_027265" /product="Phox domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29841.m002886" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036978t3" /inference="similar to AA sequence:ricco:29841.m002886" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04380t00001" mRNA complement(join(2600937..2601573,2602158..2602376, 2603316..2603558,2603648..2603812,2605292..2606061, 2606196..2606306,2607921..2608014,2608703..2609057)) /locus_tag="TCM_027265" /product="Phox domain-containing protein, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:29841.m002886" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036978t3" /inference="similar to AA sequence:frave:gene15719" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc157t5_C2; inference alignment:Newbler:10:TSA:cgbaB_g04380t00001" mRNA complement(join(2600937..2601573,2602158..2602376, 2603316..2603558,2603648..2603812,2605292..2606061, 2606196..2606314,2606750..2606836,2606947..2607045, 2607904..2607946)) /locus_tag="TCM_027265" /product="Phox domain-containing protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29841.m002886" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036978t3" /inference="similar to AA sequence:ricco:29841.m002886" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc157t2; inference alignment:Newbler:10:TSA:cgbaB_g04380t00001" CDS complement(join(2601316..2601573,2602158..2602376, 2603316..2603558,2603648..2603812,2605292..2606061, 2606196..2606306,2607921..2608014,2608703..2608960)) /locus_tag="TCM_027265" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene15719; paralog of Thecc1EG036978t3" /codon_start=1 /product="Phox domain-containing protein, putative isoform 4" /protein_id="EOY25897.1" /db_xref="TAIR:AT3G15920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N177" /translation="MNLYAHDLSLFDFANFSDNPIIDHQSSSDFLIRPHDDSNGRDSG GDDDDENKRASMANRRSPPRYRHDGTSPLPLGMDWSIPPRKWDGRDTVWPHDPHTGWS YCITIPSWVLLPKSRERRCSLEDWMEKVLSDIDISRSVSVATFLELEAAARSSFNNIN QSNAVSSVSGVVPSFLSKTNSDVSLIIGSSIASDHDASSEDMSELGTPRYRKVSSADP SMEPSTSEPHLIEPLEKTMKYGIFNKNFILENLEKFSKQKMHSGKESEIAGDKLRGNT IDTRFLPGDGAKHLPELDYSKMDGHVRRLSTESIGSDLSSVRASEISNLGVASLFGDG ILNLPENAEAPRTLDSFSSDLQFHRDLLVLFLSEERHKLKRVLNTLQRRLATAKTDME DLISRLNQEVAVRQFLETKVKDLEVELETTRDNCDENMQQAVLLERERFTQMQWDMEE LRKQCLEMELKLKTEQDEKARVESANLLIIQESKMLLQELDVAREQLANLHKHHEELE VKSKAEVKVLVKEVKSLRSSQSELKQELSRVMKEKLELERVLQKEKQRMEHANAANTK LLHECNLLRDRLEECSVNFLSEEEDKLIVDTSSPSDALDLLTTSDNRIGLLLAEAQLL AQDVENSVARLDESHSMKGGDKRTDDELRKMVTDIFVDNATLRKQVNSVIRCALNTYV KSEDKDDEEEEAPLSKTVLSKFL" CDS complement(join(2601316..2601573,2602158..2602376, 2603316..2603558,2603648..2603812,2605292..2606061, 2606196..2606304,2606750..2606836,2606947..2607045, 2607904..2608014,2608703..2608960)) /locus_tag="TCM_027265" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29841.m002886; paralog of Thecc1EG036978t3" /codon_start=1 /product="Phox domain-containing protein, putative isoform 1" /protein_id="EOY25894.1" /db_xref="TAIR:AT3G15920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N177" /translation="MNLYAHDLSLFDFANFSDNPIIDHQSSSDFLIRPHDDSNGRDSG GDDDDENKRASMANRRSPPRYRHDGTSPLPLGMDWSIPPRKWDGRDTVWPHDPHTGWS YCITIPSWVLLPKSRGSDPIVFFRVQVGIQSPEGITTSREILRRFSDFLKLLSELKKI FPKKSLPPAPPKGILRMKSRTLLEERRCSLEDWMEKVLSDIDISRSVSVATFLELEAA ARSSFNNINQSNAVSSVSGVVPSFLSKTNSDVSLIIGSSIASDHDASSEDMSELGTPR YRKVSSADPSMEPSTSEPHLIEPLEKTMKYGIFNKNFILENLEKFSKQKMHSGKESEI AGDKLRGNTIDTRFLPGDGAKHLPELDYSKMDGHVRRLSTESIGSDLSSVRASEISNL GVASLFGDGILNLPENAEAPRTLDSFSSDLQFHRDLLVLFLSEERHKLKRVLNTLQRR LATAKTDMEDLISRLNQEVAVRQFLETKVKDLEVELETTRDNCDENMQQAVLLERERF TQMQWDMEELRKQCLEMELKLKTEQDEKARVESANLLIIQESKMLLQELDVAREQLAN LHKHHEELEVKSKAEVKVLVKEVKSLRSSQSELKQELSRVMKEKLELERVLQKEKQRM EHANAANTKLLHECNLLRDRLEECSVNFLSEEEDKLIVDTSSPSDALDLLTTSDNRIG LLLAEAQLLAQDVENSVARLDESHSMKGGDKRTDDELRKMVTDIFVDNATLRKQVNSV IRCALNTYVKSEDKDDEEEEAPLSKTVLSKFL" CDS complement(join(2601316..2601573,2602158..2602376, 2603316..2603558,2603648..2603812,2605292..2606061, 2606196..2606304,2606750..2606836,2606947..2607045, 2607904..2608014,2608703..2608960)) /locus_tag="TCM_027265" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29841.m002886; paralog of Thecc1EG036978t3" /codon_start=1 /product="Phox domain-containing protein, putative isoform 1" /protein_id="EOY25895.1" /db_xref="TAIR:AT3G15920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N177" /translation="MNLYAHDLSLFDFANFSDNPIIDHQSSSDFLIRPHDDSNGRDSG GDDDDENKRASMANRRSPPRYRHDGTSPLPLGMDWSIPPRKWDGRDTVWPHDPHTGWS YCITIPSWVLLPKSRGSDPIVFFRVQVGIQSPEGITTSREILRRFSDFLKLLSELKKI FPKKSLPPAPPKGILRMKSRTLLEERRCSLEDWMEKVLSDIDISRSVSVATFLELEAA ARSSFNNINQSNAVSSVSGVVPSFLSKTNSDVSLIIGSSIASDHDASSEDMSELGTPR YRKVSSADPSMEPSTSEPHLIEPLEKTMKYGIFNKNFILENLEKFSKQKMHSGKESEI AGDKLRGNTIDTRFLPGDGAKHLPELDYSKMDGHVRRLSTESIGSDLSSVRASEISNL GVASLFGDGILNLPENAEAPRTLDSFSSDLQFHRDLLVLFLSEERHKLKRVLNTLQRR LATAKTDMEDLISRLNQEVAVRQFLETKVKDLEVELETTRDNCDENMQQAVLLERERF TQMQWDMEELRKQCLEMELKLKTEQDEKARVESANLLIIQESKMLLQELDVAREQLAN LHKHHEELEVKSKAEVKVLVKEVKSLRSSQSELKQELSRVMKEKLELERVLQKEKQRM EHANAANTKLLHECNLLRDRLEECSVNFLSEEEDKLIVDTSSPSDALDLLTTSDNRIG LLLAEAQLLAQDVENSVARLDESHSMKGGDKRTDDELRKMVTDIFVDNATLRKQVNSV IRCALNTYVKSEDKDDEEEEAPLSKTVLSKFL" CDS complement(join(2601316..2601573,2602158..2602376, 2603316..2603558,2603648..2603812,2605292..2606061, 2606196..2606280)) /locus_tag="TCM_027265" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29841.m002886; paralog of Thecc1EG036978t3" /codon_start=1 /product="Phox domain-containing protein, putative isoform 3" /protein_id="EOY25896.1" /db_xref="TAIR:AT3G15920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N177" /translation="MEKVLSDIDISRSVSVATFLELEAAARSSFNNINQSNAVSSVSG VVPSFLSKTNSDVSLIIGSSIASDHDASSEDMSELGTPRYRKVSSADPSMEPSTSEPH LIEPLEKTMKYGIFNKNFILENLEKFSKQKMHSGKESEIAGDKLRGNTIDTRFLPGDG AKHLPELDYSKMDGHVRRLSTESIGSDLSSVRASEISNLGVASLFGDGILNLPENAEA PRTLDSFSSDLQFHRDLLVLFLSEERHKLKRVLNTLQRRLATAKTDMEDLISRLNQEV AVRQFLETKVKDLEVELETTRDNCDENMQQAVLLERERFTQMQWDMEELRKQCLEMEL KLKTEQDEKARVESANLLIIQESKMLLQELDVAREQLANLHKHHEELEVKSKAEVKVL VKEVKSLRSSQSELKQELSRVMKEKLELERVLQKEKQRMEHANAANTKLLHECNLLRD RLEECSVNFLSEEEDKLIVDTSSPSDALDLLTTSDNRIGLLLAEAQLLAQDVENSVAR LDESHSMKGGDKRTDDELRKMVTDIFVDNATLRKQVNSVIRCALNTYVKSEDKDDEEE EAPLSKTVLSKFL" mobile_element 2609401..2609608 /note="source:scaffold_4_CACTA_0505 10877 11079" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2609456..2609635) /note="source:INTACT383F_F354_scaffold_3-int 2028 2198" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 2611480..2611656 /note="source:scaffold_2_CACTA_0262 4280 4482" /mobile_element_type="transposon:TIR/CACTA" gene 2615368..2620258 /locus_tag="TCM_027266" /note="dbxref CacaoGD:Thecc1EG027266" mRNA join(2615368..2615770,2617392..2620258) /locus_tag="TCM_027266" /product="BED zinc finger,hAT family dimerization domain" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s02610.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038144t4" /inference="similar to AA sequence:Phytozome:POPTR_0003s02610.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc441t7" CDS 2617407..2619701 /locus_tag="TCM_027266" /note="paralog of Thecc1EG038144t4" /codon_start=1 /product="BED zinc finger,hAT family dimerization domain" /protein_id="EOY25898.1" /db_xref="Phytozome:POPTR_0003s02610.1" /db_xref="TAIR:AT3G42170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N178" /translation="METAIIPVTPNMPVTPITPTDNSEPLNSEVQPNKRRRKKSIVWD HFTVETVGDGCIRACCNQCKKSFAYITGSKLAGTSHLKRHIALGICPVSRQRNQQTPD SKAGNATEEPRKRYRATPGFANNLFNQERCNHEVAKMIIMHEYPLHIVEHPGFIGFVR TLQPQFNTMSFNTIQGDCVAMYLKEKQSLINFISEIPGRVSLTLDLWTSNQTVGYVFI TGQFIDTEWNLHCCLLNVVMVPSPDSDSALQQAVVSSLCDWHLENRLFALTLDQSFSN ENINGNLRALFSVRNPYMFHGQLLVGNCFARVVSILAQEVLWAVGETVKKVRESVKFV KTSDTHEETFFHLREQLKVPSTKDIFIDDQTKWNTTYDMLVAACELKQVFLCLETSIP DYKIAPSIDDWKQVEIICNYLKLFFDAVSILTGPAYPTASAFYHEVSKVQLELSHAAM SNDPFVSNLTKPLKEKFDRYWSDCFLVLAIAVVMDPRFKMKLVEFSFSRIYGEDAGMW IKIVDDGIHELYLEYIAQALPPPETFMEEGNGGITPEGNGSITPEGNGGITPEGNGGI IPKTEPPEEVYCQEVSHEDVAHQEVSHEDIAHQEVSHQEAAHQEISHQEVAHQEINHQ ELAHQEISDPEVPSQDPLISIGDGLSDFEVYISEISGSQQMKSELDQYLEESLLPRVQ DFDILGWWKLNKTKYPTLSRMAADILSIPFSTVGPDSVFDTERKRMDNYRSSLRPVTL EALICAKDWLQYGALQNANVKPEF" gene 2620422..2623606 /locus_tag="TCM_027267" /note="dbxref CacaoGD:Thecc1EG027267" mRNA 2620422..2623606 /locus_tag="TCM_027267" /product="Pentatricopeptide repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s02590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041637t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s02590.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1515t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc5212t1" mobile_element 2620572..2620749 /note="source:scaffold_1_CACTA_0032 2768 2950" /mobile_element_type="transposon:TIR/CACTA" CDS 2620867..2623038 /locus_tag="TCM_027267" /note="paralog of Thecc1EG041637t1" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein" /protein_id="EOY25899.1" /db_xref="Phytozome:POPTR_0003s02590.1" /db_xref="TAIR:AT3G15930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LSB8" /translation="MISTKTSTSLTLFSHNLEPPLFLIENCKSMDQLQQIHCQTVKSG LIRKPISQNKLISFCCTNESGDMNHALQMFNQISEPKSVFLWNTMIKGYSRVDCPKHG ISMYLNMLKQDVKPDDYTFPFLLKGFDRDVGLSCGKKLHGHAVKFGFGSNVFVQNALI HMYSLCGQMEMARAVFDVSCKRDVITWNVIITGYNRMKQYDETNKLFDEMERNGMVPT SVTLVSLLSACSKLKDLEVGKRVHKYIQKCKVESNLTLENALMDMYAACGEMDVAVRI FDRMKTKDVISWTTIVSGFVNKGEIDLARDYFDRMPERDYVSWTAMIDGYLRVNCFKE ALVLFREMQALNIRPDEFTMVSILTACAQLGALQIGEWIKTYIERNKVKNDVFVGNAL IDMYFKCGSIEKAQRVFNGMPWRDKFTWTAMIFGLAINGHGEEALGMFSEMLRASIKP DEVTYIGVLCACTHAGMVDEGRKFFASMTTEHGVQPNVAHYGCMVDLLGRAGHLQEAC EVIKNMPMKPNSIVWGALLGGCRLHKDVEIAEMAAKQILESDPDNGAVYVMLCNIYAS CKRWDSLHDLRESMMHRGIKKTPGCSLIEMNGVVHEFVAGDQSHPQSKEIYLKLDKVM RDLEVAGYSPDTSEVFLDIGEEDKQSTLCWHSEKLALAFGLICSRPGVTIRIVKNLRM CVDCHRVAKLVSKLYDREVIVRDRTRFHHFRHGSCSCKDYW" gene complement(2623648..2626019) /locus_tag="TCM_027268" /note="dbxref CacaoGD:Thecc1EG027268" mRNA complement(join(2623648..2624959,2625570..2626019)) /locus_tag="TCM_027268" /product="F6D8.25" /inference="alignment:exonerate- protein:2:frave:gene15717.2" /inference="similar to AA sequence:ricco:29841.m002891" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage" CDS complement(2623991..2624944) /locus_tag="TCM_027268" /note="dbxref ricco:29841.m002891" /codon_start=1 /product="F6D8.25" /protein_id="EOY25900.1" /db_xref="TAIR:AT1G52530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSQ5" /translation="MKFKAFLTEHGVSLLERRFLPALDKMGKICHLFLTRDHAIFLHN LLNGDGVQCIAQFRKEALFDDYRISSQNEDRIAFAIDVSLLLRAVRSSVSICTEFGNG PSANRLQIKLVKKLPPNCTQPMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQTAL DIAQDLPQTLVQVPDLNQLQNFVERMKHVGDLLNVSISKYGDLHVQISTTLITLGAEF RKLLVIGEQAEAPSEDRNLSAQSRSERAISRGDAQSVQVSVKHFSRSLQCHLAKPDCA FYGIAPQGACLTVIFQFFIPGTRQTDKSISLHCRLPVLDPG" mobile_element complement(2625730..2626262) /note="source:CACAO_on_E175_scaffold_1 439 969" /mobile_element_type="transposon:TIR/hAT" gene complement(2627565..2631007) /locus_tag="TCM_027270" /note="dbxref CacaoGD:Thecc1EG027270" mRNA complement(join(2627565..2629892,2630442..2631007)) /locus_tag="TCM_027270" /product="Far1-related sequence 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s20880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036972t3" /inference="similar to AA sequence:Phytozome:POPTR_0001s20880.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2118t1" CDS complement(2627889..2629892) /locus_tag="TCM_027270" /note="paralog of Thecc1EG036972t3" /codon_start=1 /product="Far1-related sequence 6" /protein_id="EOY25901.1" /db_xref="Phytozome:POPTR_0001s20880.1" /db_xref="TAIR:AT1G52520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RVA1" /translation="MDRVSLNTDPVVDDDADEFEIEGDCGITECIGQSGVIQGENPLP PAVGMEFESYEDVYYFYNCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKKSE ANRPRPETRTGCPAMIKFRLMENRRWRIIEVELDHNHLISPASGKFYKSHKHIGLGTK RALQLDGADEVKKIKLFRTVVIDVEGNESADLSDGEFRTTSSKSNQLRLKEGDAQAVH NYFSGLQMTDPNFIYVVDLNEKGCLRNLFWIDARSRAAYGYFGDVVVIDTTCLTYKYE VPLVSFVGVNHHGQSVLLGCGLLAGETIESYTWLFRAWLTCMLGRPPQAIITDQCRTL QAAVADVFPRASHCLSLSCIMQKVPEKLGELYEFEAIRMALNNAVYYSLRPEEFEATW EDMVNRHGIRDHIWLQTLYEDRRRWVPVYLKETSLAGMFPTRPNEVMESFFDGYLDKR TSLKEFLDKYEQALQENHQLETLADMDSRNSGFTMKSRCYFELQLAKLYTNNILREFE REVEGMYSCFGTRQINVEGQIMTYMVREQIDVEANRRETRDFEVLYNATEMEVLCVCG LFNLRGYLCRHALSVLHQNGMEEIPPQYILSRWRKDIKRSYVLNHSCGGIDVNNPVHR YDHLYKCIMQVVEEGRKSQDRYKDTVQALDEILSKLHLVQGHL" gene complement(2632202..2635043) /locus_tag="TCM_027271" /note="dbxref CacaoGD:Thecc1EG027271" mRNA complement(join(2632202..2634551,2634817..2635043)) /locus_tag="TCM_027271" /product="FAR1-related sequence 6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017368001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027272t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017368001" /note="transcript variant 1; alternatively spliced; quality class is strong-expresste, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1050t1" mRNA complement(join(2632279..2634551,2634810..2635009)) /locus_tag="TCM_027271" /product="FAR1-related sequence 6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017368001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027272t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017368001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc984t1; alternateUTRof:Thecc1EG027271t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1050t1; inference alignment:Newbler:10:TSA:cgbaP2_g16987t00001" CDS complement(2632539..2634551) /locus_tag="TCM_027271" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG027272t1" /codon_start=1 /product="FAR1-related sequence 6 isoform 1" /protein_id="EOY25902.1" /db_xref="Phytozome:GSVIVT01017368001" /db_xref="TAIR:AT1G52520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C496" /translation="MEEEEASLSNDQLPEGKCNGEALKERDSGPTELDGQNGLPEGKK EFVAPAVGMEFESYDDAYNYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGF KRIKDVNRLRKETRTGCPAMIRMRVMDSKRWRVLEVTLEHNHLLGAKIYKSIKKMGSG TKRKLQSSSDAEVRTIKLYRALVIDAGVNGNPNSNAREVRNFSEHPNQLNLRKGDSQA IYNYLCRLQLTNPNFFYLMDLNDEGHLRNVFWVDSHCRASCGYFGDVIYIDNTCLSNR YETPLVALVGINHHGQTVLLGCGLLAGETSECYTWLFKAWLTCMSGQCPQTIITDRCK ALQNAIAEVFPKSNHRFSLLHIMKKVPEKLGGLRNYDAIRKTFVKAVYETLKVIEFEA AWGFMVQRFGITDHEWLRSLYEDRDRWAPVYLKDIFFAGMSSSRPGENVSPFFEKYVH KQTPVKEFLDKYELALQKKHKEETLADIESRNSSPTLRTRCSFELQLSKLYTREIFKR FQFEVEEMYSCFSTTQLHVDGPIIIFLVKERVLGEGNRREIRDYEVLYNRTASEVRCI CSCFNFCGYLCRHALCVLNFNGVEEIPSKYILSRWKKDYKRLYVPDQGFNNVDVVDRI QWFNQLYRSALQVVEEGAISLDHYKVALQAFEESLNRVHEVEEKQE" CDS complement(2632539..2634551) /locus_tag="TCM_027271" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG027272t1" /codon_start=1 /product="FAR1-related sequence 6 isoform 1" /protein_id="EOY25903.1" /db_xref="Phytozome:GSVIVT01017368001" /db_xref="TAIR:AT1G52520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C496" /translation="MEEEEASLSNDQLPEGKCNGEALKERDSGPTELDGQNGLPEGKK EFVAPAVGMEFESYDDAYNYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGF KRIKDVNRLRKETRTGCPAMIRMRVMDSKRWRVLEVTLEHNHLLGAKIYKSIKKMGSG TKRKLQSSSDAEVRTIKLYRALVIDAGVNGNPNSNAREVRNFSEHPNQLNLRKGDSQA IYNYLCRLQLTNPNFFYLMDLNDEGHLRNVFWVDSHCRASCGYFGDVIYIDNTCLSNR YETPLVALVGINHHGQTVLLGCGLLAGETSECYTWLFKAWLTCMSGQCPQTIITDRCK ALQNAIAEVFPKSNHRFSLLHIMKKVPEKLGGLRNYDAIRKTFVKAVYETLKVIEFEA AWGFMVQRFGITDHEWLRSLYEDRDRWAPVYLKDIFFAGMSSSRPGENVSPFFEKYVH KQTPVKEFLDKYELALQKKHKEETLADIESRNSSPTLRTRCSFELQLSKLYTREIFKR FQFEVEEMYSCFSTTQLHVDGPIIIFLVKERVLGEGNRREIRDYEVLYNRTASEVRCI CSCFNFCGYLCRHALCVLNFNGVEEIPSKYILSRWKKDYKRLYVPDQGFNNVDVVDRI QWFNQLYRSALQVVEEGAISLDHYKVALQAFEESLNRVHEVEEKQE" gene complement(2635020..2638972) /locus_tag="TCM_027272" /note="dbxref CacaoGD:Thecc1EG027272" mRNA complement(join(2635020..2637733,2638592..2638972)) /locus_tag="TCM_027272" /product="FAR1-related sequence 8" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g13160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027271t2" /inference="similar to AA sequence:Phytozome:GSVIVT01017369001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc846t4" CDS complement(join(2635586..2637733,2638592..2638813)) /locus_tag="TCM_027272" /note="paralog of Thecc1EG027271t2" /codon_start=1 /product="FAR1-related sequence 8" /protein_id="EOY25904.1" /db_xref="Phytozome:GSVIVT01017369001" /db_xref="TAIR:AT1G80010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S793" /translation="MPIIASTLTHQVNTAKAKDRIPQNAPKWSSRLGKTNLSYFDARL LTLTPTMADDSTFSPSDHQALSPSPDLDITIEEGSQNSEQLFEDDGNELEMEGNELEI EGNDIDIESNGLEIEGNGLDIESNGLQDCDQMLEIEDNHENDGDETTAVAVENGISQG KDYPPPVVGMEFESYDDAYNYYNYYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEG FKTIKEANSRRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHLFDHERAQNCKSHKK MDAVAKRKVEPAVDVEVRTIKLYRTPVVDPVGYGSSNSLEGEISDNVDRSKRLKLKKG DSQIIYNYFSHIQLANPNFVYLMDLNDEGYLRNVFWIDSRSRAAYGYFGDVVKIDTTC LSNKYEIPLVAFVGVNHHGQSILLGCGLLADNTFETYVWLFRAWLTCMSGRPPQTIIT DQCRTMQGAISEVFPRAHHRLHLSHVMQSVLENLGELQESGVFQMILNRIVYDSLKVD EFEMGWDDMIRRFGIADHAWLRSLYEERERWAPVYLKDTFFAGMCSFQSGESMSSYFD GYVHKQTSLEEFFDMYELILQKKHKREALDDLESRDSDPMLKTRCYYEIQLSKLYTNS IFRRFQDEVVMMTSCLSITQVNANGPVITYMIKEPEGEGDQRDMRNFEVMYDKAGMEI RCICGCFNFNGYLCRHGLYVLNYNGLEEIPFQYILSRWRKDFKRLYMPDLGSNNIDIT NPVQWFDHLYRRSMQVVEEGMRSQDHYMVAWQAFKESLNKVRLVADKHV" gene 2639067..2645649 /locus_tag="TCM_027273" /note="dbxref CacaoGD:Thecc1EG027273" mRNA join(2639067..2639767,2639855..2639930,2640019..2640104, 2640632..2640725,2640831..2640907,2641134..2641261, 2642319..2642390,2643599..2643669,2644152..2644227, 2644883..2645026,2645126..2645249,2645336..2645649) /locus_tag="TCM_027273" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29841.m002894" /inference="similar to AA sequence:Phytozome:POPTR_0001s20870.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:PASA:2:TSA:puevd3b026378t1a2; alternateUTRof:Thecc1EG027273t1; inference alignment:Newbler:10:TSA:cgbaL_g00757t00002" mRNA join(2639067..2639767,2639855..2639930,2640019..2640104, 2640632..2640725,2640831..2640907,2641134..2641261, 2642319..2642390,2643599..2643669,2644152..2644227, 2644883..2645026,2645126..2645249,2645348..2645649) /locus_tag="TCM_027273" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29841.m002894" /inference="similar to AA sequence:Phytozome:POPTR_0001s20870.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00757t00002" CDS join(2639507..2639767,2639855..2639930,2640019..2640104, 2640632..2640725,2640831..2640907,2641134..2641261, 2642319..2642390,2643599..2643669,2644152..2644227, 2644883..2645026,2645126..2645165) /locus_tag="TCM_027273" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY25905.1" /db_xref="Phytozome:POPTR_0001s20870.1" /db_xref="TAIR:AT1G52510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZ57" /translation="MAGTLLLSPQPLTLPNFSVSTKKPLINSQRATKLVTRASATEKN DDKSNDDKGFIPFGFVTDNPSSRSAIQLPETPAQDGNVGQMLYRIEDKGKEYGSYIKS GKFRWFVRETGSPQSRRGTVVFLHGAPTQSYSYRVVMSQMSDAGFHCFAPDWIGFGFS DKPQPGYGFDYTEKEFHEELDKLLDVLGVKSPFFLVVQGFLVGSYGLTWALKNPSKIS KLAILNTPLTVSSPIPGLFQKLRIPLFGEFTSQNAVMAERFIEAGSPYVLKLEKADVY RLPYLSSSGPGFALLEAARKINFRDISSQIADGFASGRWDKTILIAWGIADKYLPQSV AEEFQKGNPNSVELELIEGAGHMPQEDWPEKVVDALKRFL" CDS join(2639507..2639767,2639855..2639930,2640019..2640104, 2640632..2640725,2640831..2640907,2641134..2641261, 2642319..2642390,2643599..2643669,2644152..2644227, 2644883..2645026,2645126..2645165) /locus_tag="TCM_027273" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY25906.1" /db_xref="Phytozome:POPTR_0001s20870.1" /db_xref="TAIR:AT1G52510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZ57" /translation="MAGTLLLSPQPLTLPNFSVSTKKPLINSQRATKLVTRASATEKN DDKSNDDKGFIPFGFVTDNPSSRSAIQLPETPAQDGNVGQMLYRIEDKGKEYGSYIKS GKFRWFVRETGSPQSRRGTVVFLHGAPTQSYSYRVVMSQMSDAGFHCFAPDWIGFGFS DKPQPGYGFDYTEKEFHEELDKLLDVLGVKSPFFLVVQGFLVGSYGLTWALKNPSKIS KLAILNTPLTVSSPIPGLFQKLRIPLFGEFTSQNAVMAERFIEAGSPYVLKLEKADVY RLPYLSSSGPGFALLEAARKINFRDISSQIADGFASGRWDKTILIAWGIADKYLPQSV AEEFQKGNPNSVELELIEGAGHMPQEDWPEKVVDALKRFL" gene complement(2644452..2653840) /locus_tag="TCM_027275" /note="dbxref CacaoGD:Thecc1EG027275" mRNA complement(join(2644452..2644479,2646263..2646783, 2646858..2646892,2647201..2647303,2647551..2647628, 2648691..2648741,2650454..2650579,2650681..2650749, 2651433..2651490,2651639..2651690,2651813..2652143)) /locus_tag="TCM_027275" /product="MUTM-1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017379001" /inference="similar to AA sequence:ricco:29841.m002895" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc780t2; inference alignment:Newbler:10:TSA:cgbaB_g01222t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15591t2" mRNA complement(join(2646080..2646783,2646858..2646892, 2647360..2647459,2647551..2647628,2648691..2648741, 2650454..2650579,2650681..2650749,2651433..2651490, 2651639..2651690,2651813..2652148)) /locus_tag="TCM_027275" /product="MUTM-1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017379001" /inference="similar to AA sequence:ricco:29841.m002895" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00933t00001_C2; inference alignment:Newbler:10:TSA:cgbaB_g01222t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15591t2" mRNA complement(join(2646091..2646783,2646858..2646892, 2647201..2647303,2647439..2647459,2647551..2647628, 2648691..2648741,2650454..2650579,2650681..2650749, 2651433..2651490,2651639..2651690,2651813..2652088, 2653455..2653840)) /locus_tag="TCM_027275" /product="MUTM-1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017379001" /inference="similar to AA sequence:ricco:29841.m002895" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01222t00001" CDS complement(join(2646355..2646783,2646858..2646892, 2647201..2647303,2647551..2647628,2648691..2648741, 2650454..2650579,2650681..2650749,2651433..2651490, 2651639..2651690,2651813..2652041)) /locus_tag="TCM_027275" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29841.m002895" /codon_start=1 /product="MUTM-1 isoform 2" /protein_id="EOY25908.1" /db_xref="TAIR:AT1G52500.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O80358" /translation="MPELPEVEAARRAIEENCLGKKIKKAIIANDSKVIEGVSASDFE SSLLGKTIVSAHRKGKNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDNDE WPSKYSKFFVELEDGLELSFTDKRRFARVRLLKDPTSVPPISELGPDALFQPMTVDEF TESLNKKKIAIKALLLDQSFISGIGNWIADEVLYQARIHPLQISSSLSKENCATLLQC INEVIEKAVEVGADSSQFPSNWIFHSREKKPGKAFVDGKKIDFINAGGRTSAYVPELQ KLSGKQATKAAGKPRKQASKRKGGEDEDNDEDDMGDEPTSEEEETTKGAKSKKRGNRR GRGKKPPTKRKSEESDDDSGGNEDGSSDDDDNDDEDAKKKPRKAKTNNYKQAKTLNAS NQVVSNQSGKKPKKKAK" CDS complement(join(2646355..2646783,2646858..2646892, 2647201..2647303,2647439..2647459,2647551..2647628, 2648691..2648741,2650454..2650579,2650681..2650749, 2651433..2651490,2651639..2651690,2651813..2652041)) /locus_tag="TCM_027275" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29841.m002895" /codon_start=1 /product="MUTM-1 isoform 1" /protein_id="EOY25907.1" /db_xref="TAIR:AT1G52500.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O80358" /translation="MPELPEVEAARRAIEENCLGKKIKKAIIANDSKVIEGVSASDFE SSLLGKTIVSAHRKGKNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDNDE WPSKYSKFFVELEDGLELSFTDKRRFARVRLLKDPTSVPPISELGPDALFQPMTVDEF TESLNKKKIAIKALLLDQSFISGIGNWIADEVLYQARIHPLQISSSLSKENCATLLQC INEVIRYAVEVIEKAVEVGADSSQFPSNWIFHSREKKPGKAFVDGKKIDFINAGGRTS AYVPELQKLSGKQATKAAGKPRKQASKRKGGEDEDNDEDDMGDEPTSEEEETTKGAKS KKRGNRRGRGKKPPTKRKSEESDDDSGGNEDGSSDDDDNDDEDAKKKPRKAKTNNYKQ AKTLNASNQVVSNQSGKKPKKKAK" CDS complement(join(2646355..2646783,2646858..2646892, 2647360..2647459,2647551..2647628,2648691..2648741, 2650454..2650579,2650681..2650749,2651433..2651490, 2651639..2651690,2651813..2652041)) /locus_tag="TCM_027275" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29841.m002895" /codon_start=1 /product="MUTM-1 isoform 3" /protein_id="EOY25909.1" /db_xref="TAIR:AT1G52500.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O80358" /translation="MPELPEVEAARRAIEENCLGKKIKKAIIANDSKVIEGVSASDFE SSLLGKTIVSAHRKGKNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDNDE WPSKYSKFFVELEDGLELSFTDKRRFARVRLLKDPTSVPPISELGPDALFQPMTVDEF TESLNKKKIAIKALLLDQSFISGIGNWIADEVLYQARIHPLQISSSLSKENCATLLQC INEVIRYAVEVDAECSCFPHDWLFHFRWGKKSGKIKGKKIDFINAGGRTSAYVPELQK LSGKQATKAAGKPRKQASKRKGGEDEDNDEDDMGDEPTSEEEETTKGAKSKKRGNRRG RGKKPPTKRKSEESDDDSGGNEDGSSDDDDNDDEDAKKKPRKAKTNNYKQAKTLNASN QVVSNQSGKKPKKKAK" mobile_element 2653177..2653258 /note="source:scaffold_10_CACTA_0137 6927 7008" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2653180..2653271) /note="source:CACAO_Again_on_E207_scaffold_9 314 405" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(2653269..2653367) /note="source:scaffold_1_CACTA_0008 14046 14142" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2654988..2656016 /note="source:CACAO_Again_on_S_E195_scaffold_6 1 1029" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(2656404..2656898) /note="source:CACAO_M_S_E52027_F3_scaffold_5 6217 6697" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2657638..2671537 /note="source:INTACT59_F126_scaffold_9-int 878 14929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2672578..2673683 /note="source:INTACT59_F126_scaffold_9-int 15809 16912" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2676639..2691713 /locus_tag="TCM_027279" /note="dbxref CacaoGD:Thecc1EG027279" mRNA join(2676639..2677285,2677399..2677460,2677633..2677725, 2677830..2677902,2679118..2679462,2680118..2680182, 2680628..2680759,2681510..2681551,2681662..2682195, 2682918..2683072,2684674..2685184,2685405..2685467, 2685561..2685662,2685877..2686194,2686269..2686361, 2686476..2686577,2686913..2687017,2687464..2687597, 2687841..2688024,2688146..2688277,2688462..2688574, 2688661..2688742,2689462..2691713) /locus_tag="TCM_027279" /product="Eukaryotic translation initiation factor 3 subunit, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s02530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038439t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s02530.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1433t5" CDS join(2677216..2677285,2677399..2677460,2677633..2677725, 2677830..2677902,2679118..2679462,2680118..2680182, 2680628..2680759,2681510..2681551,2681662..2682195, 2682918..2683072,2684674..2685184,2685405..2685467, 2685561..2685662,2685877..2686194,2686269..2686361, 2686476..2686577,2686913..2687017,2687464..2687597, 2687841..2688024,2688146..2688277,2688462..2688574, 2688661..2688742,2689462..2691129) /locus_tag="TCM_027279" /note="paralog of Thecc1EG038439t2" /codon_start=1 /product="Eukaryotic translation initiation factor 3 subunit, putative" /protein_id="EOY25910.1" /db_xref="Phytozome:POPTR_0003s02530.1" /db_xref="TAIR:AT1G15290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RVA6" /translation="MAPRSGRGKSNKAKAEKKKKEEKVVPTVLDITVITPYESQVILK GISTDKILDVRRLLASHVETCHLTNYSLAHEVKGKRLNDRVEVVTLKPCLLKMVEEDY TEEAQAVTHVRRLLDIVSCTARFSRPKRIRSQSTSASSDSKSKKINGRAQQPNNSTPP PPSPSDGGVEPTAQTTSVSAAVSESMDMAAIHPTPKLSEFYDFFSLSHLTPPILNLRR CDPKDVEERRDGDYFGMQIKICNGKLIQVVASVKGFYSLGKHFFQSHSLLDLLQNLSQ AFANAYESLMKAFLEHNKFGNLPYGFRANTWLVPPPVAESPSNIPSFPSEDELWGGNG GGQGRNGEYDLRPWATDFAILASLPCKTEEERIVRDRKAFLLHSRFIDVSVFKAVAAI QRVMNSRLNAKDTVNCNSNSVLHEDHVGDLSIIVKRDLGDANFKPEVKVTGCQSSDMT AEEIAQRNLLKGITADESVVVHDTSSLGTVIVRHCGYTAIVKVVGDVKKEKCDAKDIE IYDQPDGGANALNINSLRVLLHKSCTAELTGGGQLYQSNLNDSEASRCLVQRVIKESL TKLDEKSVAPERSIRWELGSCWVQYLQKQESSMDGNSKGPDNDCEAEPVVKGLGKQFK FLKKRGKKPSNVTSSIDKEKNDSESCSMDVKSNLGHQSNGESSSELELKNLISKEAYS RLEESGTGLHLKSADELVKMAYKYYDDIALPKLVTDFGSLELSPVDGCTLTDFMHLRG LQMRSLGCLVELAEKLPHIQSLCIHEMVTRAFKHVLKAVVASVDKFEDLPAAIASSLN FLLGNSGGEDNDLNANDDYFLKLGWLRKFLAAKFGWTLRDEFQHLRKLSILRGLCHKI GLELVPRDYDMECPEPFKMWDVISMYPVCKHVGCSSADGRTLLESSKIALDKGKLEDA VNYGTKALARMIAVCGPYHRTTASAYSLLAVVLYHTGDFNQATIYQQKALDINERELG LDHPDTMKSYGDLSVFYYRLQHIEMALKYVNRALFLLHFTCGLSHPNTAATYINVAMM EEGMGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQT TLKILQAKLGLDDLRTQDAAAWLEYFESKALEQQEAARNGTPKPDASIASKGHLSVSD LLDYISPDQDSKGIDVHRKQRRAKVLQISDKTHDTHHHLVTDSAALLDVSEKTVGTAD SNGVGMVASIHSEEPEETDDITRIEPTTTSEVVEETATDEGWQEANSKGRSGNAAGKK SGRKRPVLAKLNVNSSEYSNVRESGSRREIISPLRKTASKNIIKEVLPAKQTKSHSLS PGGNSVSLQASVSKVFSPPANLSAIASKSLSYKEVAVAPPGTVLKPLQEKVEEQNEEK TEQQNEEKTEQQMCTIPPETPKVDVGNNISVDDVAEDDDENEGTHDSENQSEETATEF DKAASSNQEKPGETKGSKLSASAEPFSPGALYMNPQISSVAVTSVYDVTASQSMLAEP VGPPVAARVPCGPRSPLYYRNNHSYPMKHSFLRYQAPIMEQSGFGPPTVMNPHAPEFV PSKVWHMIPGTADSRVSDELNSLNEAKNTEVKEVDEKFIKEVKDSKMKKSSSEEKSEL ARQILLSFIVRSVKQNMNPASEPAVSDKRHNRTENSSDAVTNDSAIIKILHGHEGKDL DSQPSSCEEPKASDVNKKKTGDGEGFIVVTKRRRNRQQFTNGVTGLYNQQSICASVR" mobile_element complement(2684066..2684173) /note="source:CACAO_Mariner_E176_scaffold_6 3785 3892" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(2692104..2693109) /locus_tag="TCM_027280" /note="dbxref CacaoGD:Thecc1EG027280" mRNA complement(join(2692104..2692460,2692630..2693109)) /locus_tag="TCM_027280" /product="Cupredoxin superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004371t1" /inference="similar to AA sequence:Phytozome:POPTR_0002s16270.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1307t1" CDS complement(join(2692120..2692460,2692630..2692807)) /locus_tag="TCM_027280" /note="paralog of Thecc1EG004371t1" /codon_start=1 /product="Cupredoxin superfamily protein, putative" /protein_id="EOY25911.1" /db_xref="Phytozome:POPTR_0002s16270.1" /db_xref="TAIR:AT5G26330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7LTE5" /translation="MALAKRGVVFFMMIMVALRGLSMAAVYKVGDSAGWTILGNGQDY HDWAATNKFFVGDTLFFEYNTQFHNVKQVNVEDFKSCNPDNPIATYVDGSDNITLKSS GEYYFLCGFPGHCQAGMKLHITVNSAANSPQNPTPTPLASNVAPSLHASKLSCVVMVV AAATLPFFLLLV" mobile_element complement(2692484..2692557) /note="source:INTACT146F_F14_scaffold_2-int 13456 13535" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2692500..2692568 /note="source:INTACT146F_F14_scaffold_2-int 13456 13521" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2697791..2698810) /locus_tag="TCM_027281" /note="dbxref CacaoGD:Thecc1EG027281" mRNA complement(2697791..2698810) /locus_tag="TCM_027281" /product="VQ motif-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400024861" /inference="similar to AA sequence:TAIR:AT1G80450.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15587t1" CDS complement(2698199..2698780) /locus_tag="TCM_027281" /codon_start=1 /product="VQ motif-containing protein, putative" /protein_id="EOY25912.1" /db_xref="TAIR:AT1G80450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXG9" /translation="MAASSNTTTTTMHQPAHPTSPNTTFVQADPSTFRTIVQQLTGAP DDPSAQKLPLTHPARPGAATDMGPKKPVFKLHERRQAMKKLEIKLNSNNIGKSEWPSD FLFVRQRGFLVSPVSTLDFWPRVSPTSRGGSESSRSPIEEEERAIAEKGFYLHPSPLS TPRGGAEPELLPLFPLHSPKESEHNYDDNSSSK" gene 2700619..2713313 /locus_tag="TCM_027282" /note="dbxref CacaoGD:Thecc1EG027282" mRNA join(2700619..2701722,2713276..2713313) /locus_tag="TCM_027282" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.23 coverage" CDS 2700934..2701227 /locus_tag="TCM_027282" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25913.1" /translation="MMSHAALKFANKKREDFAVSDAEVVRRGRPETPPFCSCLVIPCF ISSSFLLAGYFHVLWQNFFPFYFLLLFLVVCVKELLFDIKEKRGCLTGTAFFP" mobile_element 2704608..2706636 /note="source:CACAO_M_S_E51603_F76_scaffold_4 1 2017" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2706806..2713185 /note="source:CACAO_M_S_E66812_F83_scaffold_6 1 8083" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2709746..2713430) /note="source:CACAO_M_S_E119572_F76_scaffold_9 19 3684" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2713433..2716140 /note="source:CACAO_M_S_E38130_F233_scaffold_4 98 2788" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2718242..2733176 /locus_tag="TCM_027285" /note="dbxref CacaoGD:Thecc1EG027285" mRNA join(2718242..2718667,2718746..2718901,2719001..2719057, 2719204..2719359,2733145..2733176) /locus_tag="TCM_027285" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034286001" /inference="similar to AA sequence:Phytozome:GSVIVT01013974001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1700t2" CDS join(2718268..2718667,2718746..2718774) /locus_tag="TCM_027285" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25914.1" /db_xref="Phytozome:GSVIVT01013974001" /translation="MGRQFLKFLVLSVILLVRFQGQEGCLEEEKKALLELKAFVKSDG YDADLLLPSWVGDTHSNCCNWDRVTCNSTTGHVIELSLSNTRQIDTDIESMFDYSENE WYFNISLLQPFKELRSLNLSYNKISDWIQNQGVGSLLRLE" mobile_element 2721965..2726629 /note="source:CACAO_hAT_E2577_scaffold_6 1 4665" /mobile_element_type="transposon:TIR/hAT" mobile_element 2726633..2728762 /note="source:CACAO_M_E69946_F329_scaffold_9 1631 3753" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2728764..2729177) /note="source:INTACT639F_F363_scaffold_5-int 8175 8573" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2729246..2730216 /note="source:CACAO_on_E683_scaffold_9 1323 2301" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 2730216..2731536 /note="source:CACAO_M_E69946_F329_scaffold_9 3746 5089" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2731537..2731670 /note="source:CACAO_M_E69946_F329_scaffold_9 119 249" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(2732484..2733104) /locus_tag="TCM_027287" /note="dbxref CacaoGD:Thecc1EG027287" mRNA complement(join(2732484..2732780,2732861..2733104)) /locus_tag="TCM_027287" /product="Copper binding protein 6, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g23800.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006411t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s21660.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g17169t00001" CDS complement(join(2732581..2732780,2732861..2733032)) /locus_tag="TCM_027287" /note="paralog of Thecc1EG006411t1" /codon_start=1 /product="Copper binding protein 6, putative" /protein_id="EOY25915.1" /db_xref="Phytozome:POPTR_0001s21660.1" /db_xref="TAIR:AT2G02850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4YAW5" /translation="MAKERGSAIIAMALLLFFLLHSETTHAATFKVGDDDGWRFGVSD WPNGKSFKAGDILEFVYNRANHNVAVVDKDGHDSCTVPDNATVFQTGDDKITLEKGEN YFICGFTGHCANGMNLAITAA" mobile_element complement(2735680..2735764) /note="source:INTACT296_F13_scaffold_9-int 13168 13257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2735693..2735703) /note="source:CACAO_M_E14113_F106_scaffold_3 13808 13883" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2735704..2735765 /note="source:scaffold_1_CACTA_0006 8437 8501" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2735719..2735774 /note="source:CACAO_Again_on_E207_scaffold_9 1043 1098" /mobile_element_type="transposon:TIR/hAT" gene complement(2735813..2740174) /locus_tag="TCM_027288" /note="dbxref CacaoGD:Thecc1EG027288" mRNA complement(join(2735813..2736589,2737898..2738864, 2739325..2739546,2739813..2740174)) /locus_tag="TCM_027288" /product="Actin-like ATPase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017422001" /inference="similar to AA sequence:Phytozome:GSVIVT01017422001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06423t00001" mRNA complement(join(2735837..2736585,2737898..2738864, 2739325..2739546,2739813..2740088)) /locus_tag="TCM_027288" /product="Actin-like ATPase superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017422001" /inference="similar to AA sequence:Phytozome:GSVIVT01017422001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc967t2_C2; inference alignment:Newbler:10:TSA:cgbaB_g06423t00001" mRNA complement(join(2736115..2736591,2737898..2738864, 2739325..2739546,2739813..2740036)) /locus_tag="TCM_027288" /product="Actin-like ATPase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017422001" /inference="similar to AA sequence:Phytozome:GSVIVT01017422001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1021t1; inference alignment:Newbler:10:TSA:cgbaB_g06423t00001" CDS complement(join(2736344..2736589,2737898..2738864, 2739325..2739546,2739813..2739946)) /locus_tag="TCM_027288" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Actin-like ATPase superfamily protein isoform 1" /protein_id="EOY25916.1" /db_xref="Phytozome:GSVIVT01017422001" /db_xref="TAIR:AT1G80460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A0JPS9" /translation="MSKEEVFIGSVDQGTTSTRFIIYDKSARPIGSHQVEFTQFYPEA GWVEHDPMEILESVRVCIAKALDKATADGHNVDSGLKAIGLTNQRETTLLWSKSTGCP LYNAIVWMDARTSSVCRKLEKELPGGRTHFVESCGLPISTYFSAVKLLWLMENVDAVK AAIKEGDALFGTIDTWLIWNLTGGINGGLHVTDVSNASRTMLMDLKTLDWDKTTLQTL GIPAEILPKIISNSEVIGKIGKGWPIAGVPIAGCLGDQHAAMVGQACRKGEAKSTYGT GAFILLNTGDEMVRSNHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGII STASEIESLALQVDSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVL ESMCFQVKDVLDSMHKDAGEKGEVKNEKGEFLLRVDGGATVNNLLMQIQADLLGSPVV RPADIETTALGAAYAAGLAVGVWKEDEIFASREKIKTATIFRPVLSEELRKKKVDSWC KAVERTFDLADLSI" CDS complement(join(2736562..2736585,2737898..2738864, 2739325..2739546,2739813..2739946)) /locus_tag="TCM_027288" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Actin-like ATPase superfamily protein isoform 3" /protein_id="EOY25918.1" /db_xref="Phytozome:GSVIVT01017422001" /db_xref="TAIR:AT1G80460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A0JPS9" /translation="MSKEEVFIGSVDQGTTSTRFIIYDKSARPIGSHQVEFTQFYPEA GWVEHDPMEILESVRVCIAKALDKATADGHNVDSGLKAIGLTNQRETTLLWSKSTGCP LYNAIVWMDARTSSVCRKLEKELPGGRTHFVESCGLPISTYFSAVKLLWLMENVDAVK AAIKEGDALFGTIDTWLIWNLTGGINGGLHVTDVSNASRTMLMDLKTLDWDKTTLQTL GIPAEILPKIISNSEVIGKIGKGWPIAGVPIAGCLGDQHAAMVGQACRKGEAKSTYGT GAFILLNTGDEMVRSNHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGII STASEIESLALQVDSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVL ESMCFQVKDVLDSMHKDAGEKGEVKNEKGEFLLRVDGGATVNNLLMQIQTCWGALW" CDS complement(join(2736562..2736591,2737898..2738864, 2739325..2739546,2739813..2739946)) /locus_tag="TCM_027288" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Actin-like ATPase superfamily protein isoform 2" /protein_id="EOY25917.1" /db_xref="Phytozome:GSVIVT01017422001" /db_xref="TAIR:AT1G80460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A0JPS9" /translation="MSKEEVFIGSVDQGTTSTRFIIYDKSARPIGSHQVEFTQFYPEA GWVEHDPMEILESVRVCIAKALDKATADGHNVDSGLKAIGLTNQRETTLLWSKSTGCP LYNAIVWMDARTSSVCRKLEKELPGGRTHFVESCGLPISTYFSAVKLLWLMENVDAVK AAIKEGDALFGTIDTWLIWNLTGGINGGLHVTDVSNASRTMLMDLKTLDWDKTTLQTL GIPAEILPKIISNSEVIGKIGKGWPIAGVPIAGCLGDQHAAMVGQACRKGEAKSTYGT GAFILLNTGDEMVRSNHGLLSTLAFKLGPKAPTNYALEGSIAIAGAAVQWLRDSLGII STASEIESLALQVDSTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVL ESMCFQVKDVLDSMHKDAGEKGEVKNEKGEFLLRVDGGATVNNLLMQIQRQTCWGALW " mobile_element complement(2740607..2740698) /note="source:CACAO_Mariner_E69_scaffold_2 2183 2273" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 2742463..2742854 /note="source:scaffold_7_CACTA_0795 2860 3280" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2743733..2743816 /note="source:scaffold_5_CACTA_0580 5274 5345" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2746077..2746474) /note="source:CACAO_M_E84368_F4_scaffold_10 10093 10485" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2746475..2746776 /note="source:CACAO_PIF_E119_scaffold_3 4354 4673" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 2748500..2748732 /note="source:INTACT687_F13_scaffold_3-int 1429 1643" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2749308..2755980 /locus_tag="TCM_027289" /note="dbxref CacaoGD:Thecc1EG027289" mRNA join(2749308..2749679,2751870..2752444,2752575..2752954, 2753357..2753443,2753530..2753860,2754020..2754430, 2754630..2754689,2754777..2755980) /locus_tag="TCM_027289" /product="Inorganic H pyrophosphatase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g03220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038184t1" /inference="similar to AA sequence:Phytozome:Glyma07g03220.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1277t3" mRNA join(2749318..2749679,2751870..2752444,2752575..2752954, 2753357..2753443,2753530..2753860,2754020..2754430, 2754627..2754689,2754777..2755472) /locus_tag="TCM_027289" /product="Inorganic H pyrophosphatase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g03220.1" /inference="alignment:exonerate- protein:2:ricco:29841.m002904" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038184t1" /inference="similar to AA sequence:Phytozome:Glyma07g03220.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1277t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1277t3" CDS join(2749424..2749679,2751870..2752444,2752575..2752954, 2753357..2753443,2753530..2753860,2754020..2754430, 2754627..2754689,2754777..2754983) /locus_tag="TCM_027289" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG038184t1" /codon_start=1 /product="Inorganic H pyrophosphatase family protein isoform 2" /protein_id="EOY25920.1" /db_xref="Phytozome:Glyma07g03220.1" /db_xref="TAIR:AT1G15690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P31414" /translation="MGEAVLSEMATEIVVPVCAVIGIAFSLVQWVLVSRVKLTSERHA SGGSGSNSKNGYSDYLIEEEEGINDHSVVTKCADIQTAISEGATSFLFTEYQYVGIFM IAFAILIFLFLGSVEGFSTKSQPCTYDKEKACKPALATAIFSTVSFLLGAVTSVLSGF LGMKIATYANARTTLEARKGVGKAFIIAFRSGAVMGFLLAANGLLVLYIAINLFKLYY GDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNP AVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGVNHEFTAMLFPLLISS VGILVCLITTLFATDFFEIKVVKEIEPALKKQLIISTVLMTVGIAIVTLIGVPSSFTI YNFGTQKDVKNWQLFLCVGVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNV IFGLALGYKSVIIPIFAIAISIFVSFSFAAMYGIAVAALGMLSTIATGLAIDAYGPIS DNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAA ISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGH ARPDYSTCVKISTDASIKEMIPPGALVMLTPLIVGTFFGVETLSGVLAGALVSGVQQI AISASNTGGAWDNAKKYIEAGASEHARDLGPKGSDPHKAAVIGDTVGDPLKDTSGPSL NILIKLMAVESLVFAPFFATHGGLLFKIF" CDS join(2749424..2749679,2751870..2752444,2752575..2752954, 2753357..2753443,2753530..2753860,2754020..2754430, 2754630..2754689,2754777..2754983) /locus_tag="TCM_027289" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG038184t1" /codon_start=1 /product="Inorganic H pyrophosphatase family protein isoform 1" /protein_id="EOY25919.1" /db_xref="Phytozome:Glyma07g03220.1" /db_xref="TAIR:AT1G15690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P31414" /translation="MGEAVLSEMATEIVVPVCAVIGIAFSLVQWVLVSRVKLTSERHA SGGSGSNSKNGYSDYLIEEEEGINDHSVVTKCADIQTAISEGATSFLFTEYQYVGIFM IAFAILIFLFLGSVEGFSTKSQPCTYDKEKACKPALATAIFSTVSFLLGAVTSVLSGF LGMKIATYANARTTLEARKGVGKAFIIAFRSGAVMGFLLAANGLLVLYIAINLFKLYY GDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNP AVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGVNHEFTAMLFPLLISS VGILVCLITTLFATDFFEIKVVKEIEPALKKQLIISTVLMTVGIAIVTLIGVPSSFTI YNFGTQKDVKNWQLFLCVGVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNV IFGLALGYKSVIIPIFAIAISIFVSFSFAAMYGIAVAALGMLSTIATGLAIDAYGPIS DNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAA ISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGH ARPDYSTCVKISTDASIKEMIPPGALVMLTPLIVGTFFGVETLSGVLAGALVSGVQIA ISASNTGGAWDNAKKYIEAGASEHARDLGPKGSDPHKAAVIGDTVGDPLKDTSGPSLN ILIKLMAVESLVFAPFFATHGGLLFKIF" gene 2756032..2760354 /locus_tag="TCM_027290" /note="dbxref CacaoGD:Thecc1EG027290" mRNA join(2756032..2756194,2758313..2760354) /locus_tag="TCM_027290" /product="Prephenate dehydrogenase family protein" /inference="alignment:exonerate- protein:2:ricco:29841.m002904" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038186t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s20830.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08256t00001" CDS join(2756133..2756194,2758313..2759657) /locus_tag="TCM_027290" /note="paralog of Thecc1EG038186t1" /codon_start=1 /product="Prephenate dehydrogenase family protein" /protein_id="EOY25921.1" /db_xref="Phytozome:POPTR_0001s20830.1" /db_xref="TAIR:AT1G15710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LMR3" /translation="MIKKNEDATFLPSVHLHLTKLLLVGGLEPNLTNLQKKKVKVVEP QPTTSDSKLGPQREGKIKSPLKYSIPQLGEANGNTIFESVHCLPQFCVKFRILRMLLF SATRPLNPPQPLPFLSFSRFVSLSLPLPILPNPSRSTHFPSLQIYSIDAAQPFDYESH LKNRYLQSTSLKIAIIGFGNFGQFLSETFIRHHHTLLAHSRTNYTNLANQLGVSFFSD PNDLFEQHPDVVLLSTSILSTETLLQQLPFQRLRRNTLFVDVLSVKEFPRNLFLKYLP PDFDILCTHPMFGPESGKNTWAGLPFVYDKVRIGDEESRVKRCEKFLDIFEKEGCRMV EMSCMEHDKYAAGSQFVTHTMGRVLEQFGLESSPINTKGYETLLNLVENTKGDSFDLY YGLFMYNQNALEQLERLDMAFESIKKELFGRLHRVYRKQLFGDKEEKERERRFAQKLL GNGGLIDPPLDNVGQDGS" gene complement(2761127..2766032) /locus_tag="TCM_027291" /note="dbxref CacaoGD:Thecc1EG027291" mRNA complement(join(2761127..2761414,2762268..2762537, 2763060..2763384,2764040..2764287,2764483..2764568, 2764665..2764695,2764802..2765167,2765563..2765654, 2765919..2766032)) /locus_tag="TCM_027291" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017449001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038189t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017449001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08676t00001" CDS complement(join(2762301..2762537,2763060..2763384, 2764040..2764287,2764483..2764568,2764665..2764695, 2764802..2765167,2765563..2765654,2765919..2765973)) /locus_tag="TCM_027291" /note="paralog of Thecc1EG038189t1" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein, putative" /protein_id="EOY25922.1" /db_xref="Phytozome:GSVIVT01017449001" /db_xref="TAIR:AT1G49390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MWM6" /translation="MPVKFIDYEVMDKGARDDIALCLHLCTKISPIPAQSGTVLDSEI ACTRELPSQVAESAAYAADQLNALFDTSNFPVILLELYYPAVNMASPSILPANVLLSR RVQEMVINGEEPESLYICRDEKEDEDVPSPLAPIPIIDLSLFSSSTLSTKREEELQKL KSALCSWGCFQCHMNTVRYQEIRDAVTDSANEYVKIRQPYYFLIKSTEMEAIGHGIPS SFLDEIRQVTTEFFEQPMDEKKKYSKGVEDVQGYGGDPTPEEGQFLDWQDRLFLTSYP EYLRDTKFWPESPKSFRNVLEYYTTKMRMVTELVSKSMAKSLQLEENCFLNQFGERAA LQVRFNYYPCCQKPEIVLGLKPHADGTGYTIILQDDVEGLQVLKEEHWFTVPTIPNAL LVLMGDQMEIMTNGMFKSPVHRVVTNKEKERTSIAVFYTPEKHKEIGPEDGLVNEERP RLFKKVKDYDITHWEYYQRGRRALHTAEI" mobile_element 2766973..2767576 /note="source:CACAO_PIF_E144_scaffold_10 1203 1778" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 2767562..2767664 /note="source:scaffold_1_CACTA_0029 7128 7230" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2767576..2767665) /note="source:CACAO_Again_on_E207_scaffold_9 315 405" /mobile_element_type="transposon:TIR/hAT" mobile_element 2767664..2768289 /note="source:CACAO_PIF_E144_scaffold_10 1761 2390" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 2769172..2777156 /locus_tag="TCM_027292" /note="dbxref CacaoGD:Thecc1EG027292" mRNA join(2769172..2769347,2770046..2770134,2770228..2770352, 2770509..2770605,2770803..2770912,2772453..2772527, 2775119..2775137,2775305..2775906,2776060..2777156) /locus_tag="TCM_027292" /product="Calcium-binding EF-hand family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene15988" /inference="similar to AA sequence:ricco:29841.m002907" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1279t3" mRNA join(2769301..2769347,2770046..2770134,2770228..2770352, 2770509..2770605,2770803..2770912,2772453..2772527, 2774176..2774361) /locus_tag="TCM_027292" /product="Calcium-binding EF-hand family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g44390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038419t1" /inference="similar to AA sequence:ricco:29841.m002907" /note="transcript variant 2; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09229t00001; inference alignment:Newbler:10:TSA:cgbaP1_g09229t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1279t1" mRNA join(2769319..2769347,2769595..2769738,2770046..2770134, 2770228..2770352,2770509..2770605,2770803..2770912, 2772453..2772527,2775051..>2775078) /locus_tag="TCM_027292" /product="Calcium-binding EF-hand family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g44390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038419t1" /inference="similar to AA sequence:ricco:29841.m002907" /note="transcript variant 4; alternatively spliced; quality class is strongpartial-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1279t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1279t1" mRNA join(2769327..2769451,2769580..2769738,2770046..2770134, 2770228..2770352,2770509..2770605,2770803..2770912, 2772453..2772527,2774176..2774597) /locus_tag="TCM_027292" /product="Calcium-binding EF-hand family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g44390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038419t1" /inference="similar to AA sequence:ricco:29841.m002907" /note="transcript variant 3; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01030t00001; alternateUTRof:Thecc1EG027292t2; inference alignment:Newbler:10:TSA:cgbaP1_g09229t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1279t1" CDS join(2770065..2770134,2770228..2770352,2770509..2770605, 2770803..2770912,2772453..2772527,2775119..2775137, 2775305..2775906,2776060..2776164) /locus_tag="TCM_027292" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29841.m002907" /codon_start=1 /product="Calcium-binding EF-hand family protein isoform 1" /protein_id="EOY25923.1" /db_xref="TAIR:AT3G18430.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MWM5" /translation="MGNASSMLTQYDIEEVQDYCHNLFSQQEIVSLYQRFCQLDRNAK GFISADEFLSVPEFAMNPLSQRLLKMVDGLNFKDFVAFLSAFTAKASVEQKIQLIFKV YDSDGNGKVSFNDILEVLRDLSGSFISDDQREQVLTQLLKEAGYSRDSYLMLDDFIKT FLSLVRLLNYVLAYFTESFVSVLCKLIDQGRASNIFETQSSNSTNLLQEILPRKKIEL VSSEMELDSSRKKLLEFKNFKAAASSNKHTTTSNQSILKFKNEGASSSKEVSRVPSNP RSKVCSSFCKGKGVVLQASEAEQLNTRLKILEEENEIMKLAFLETAMERKELVNEICQ LFQTLQDYSLHHKDQEDGHRSSYGSLILKPSKGRGTESSGLSQLQLENQGSEDPILAI LDQSYTST" CDS join(2770065..2770134,2770228..2770352,2770509..2770605, 2770803..2770912,2772453..2772527,2775051..>2775077) /locus_tag="TCM_027292" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29841.m002907; paralog of Thecc1EG038419t1" /codon_start=1 /product="Calcium-binding EF-hand family protein isoform 4" /protein_id="EOY25926.1" /db_xref="TAIR:AT3G18430.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MWM5" /translation="MGNASSMLTQYDIEEVQDYCHNLFSQQEIVSLYQRFCQLDRNAK GFISADEFLSVPEFAMNPLSQRLLKMVDGLNFKDFVAFLSAFTAKASVEQKIQLIFKV YDSDGNGKVSFNDILEVLRDLSGSFISDDQREQVLTQLLKEAGYSRDSYLMLDDFIKW QTLLEDKQ" CDS join(2770065..2770134,2770228..2770352,2770509..2770605, 2770803..2770912,2772453..2772527,2774176..2774226) /locus_tag="TCM_027292" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29841.m002907; paralog of Thecc1EG038419t1" /codon_start=1 /product="Calcium-binding EF-hand family protein isoform 2" /protein_id="EOY25924.1" /db_xref="TAIR:AT3G18430.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MWM5" /translation="MGNASSMLTQYDIEEVQDYCHNLFSQQEIVSLYQRFCQLDRNAK GFISADEFLSVPEFAMNPLSQRLLKMVDGLNFKDFVAFLSAFTAKASVEQKIQLIFKV YDSDGNGKVSFNDILEVLRDLSGSFISDDQREQVLTQLLKEAGYSRDSYLMLDDFIKV FGSSGLKMEVEVPVD" CDS join(2770065..2770134,2770228..2770352,2770509..2770605, 2770803..2770912,2772453..2772527,2774176..2774226) /locus_tag="TCM_027292" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29841.m002907; paralog of Thecc1EG038419t1" /codon_start=1 /product="Calcium-binding EF-hand family protein isoform 2" /protein_id="EOY25925.1" /db_xref="TAIR:AT3G18430.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MWM5" /translation="MGNASSMLTQYDIEEVQDYCHNLFSQQEIVSLYQRFCQLDRNAK GFISADEFLSVPEFAMNPLSQRLLKMVDGLNFKDFVAFLSAFTAKASVEQKIQLIFKV YDSDGNGKVSFNDILEVLRDLSGSFISDDQREQVLTQLLKEAGYSRDSYLMLDDFIKV FGSSGLKMEVEVPVD" mobile_element complement(2777257..2777449) /note="source:INTACT446_F218_scaffold_9-int 7167 7352" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 2777452..2778962 /locus_tag="TCM_027293" /note="dbxref CacaoGD:Thecc1EG027293" mRNA join(2777452..2778519,2778939..2778962) /locus_tag="TCM_027293" /product="Adenylate cyclases" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038198t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s19780.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1071t1" CDS 2777769..2778506 /locus_tag="TCM_027293" /note="paralog of Thecc1EG038198t2" /codon_start=1 /product="Adenylate cyclases" /protein_id="EOY25927.1" /db_xref="Phytozome:POPTR_0003s19780.1" /db_xref="TAIR:AT2G11890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T254" /translation="MMRYITPTPTMRKSPFPRAWIKTKLPQINPSTQVSNFSLNSHTQ MEVEVKLRLLNAISHQKLSNLISRFHTKTLIQENIFFDTPKCTLASNNAALRLRFYDL DSYSILSLKSKPELSQGISQVEEHEEPIDPSLARSFLANPRGLLDLTSSSQIMKRVKG EFGADELVCLGGFKNVRGVYDWKGLKLELDETLYDFGVSYEIECESKEPERDKKSIEG LLEENGIDYEYSELNKFAVFLSGKLPT" gene 2779052..2780383 /locus_tag="TCM_027294" /note="dbxref CacaoGD:Thecc1EG027294" mRNA join(2779052..2779404,2779878..2780383) /locus_tag="TCM_027294" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1223t3_C2" CDS 2779958..2780140 /locus_tag="TCM_027294" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25928.1" /translation="MGTCQPCLRWGFSASLNIYDSCHTGHTGLAPRDLLFHICPLYLG PVCLVIEADRHAIERS" gene 2782508..2783832 /locus_tag="TCM_027295" /note="dbxref CacaoGD:Thecc1EG027295" mRNA join(2782508..2782950,2783041..2783196,2783439..2783594, 2783675..2783832) /locus_tag="TCM_027295" /product="Receptor like protein 21" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034276001" /inference="similar to AA sequence:Phytozome:GSVIVT01013974001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc3043t1" CDS join(2782557..2782950,2783041..2783196,2783439..2783594, 2783675..2783799) /locus_tag="TCM_027295" /codon_start=1 /product="Receptor like protein 21" /protein_id="EOY25929.1" /db_xref="Phytozome:GSVIVT01013974001" /db_xref="TAIR:AT2G25470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I9S2" /translation="MGRYLTSVNISFWVVLLLLQTHGFRGCLEKERIGLLKLKAFIES VSEGPDTTLITWVDGHERSNCCSWDRVKCNATTGRLMELSLSHARTRIPGTLFRICNL NISLFLPFEELVSLDLSDNAFGGWIDQTEGYTSFSSLKKLEKLDLTNNYFNTNIFSSF SQFKSLKTLIMPYNDLKGSFPINGSKGLLSLKKLEILDLNNNLLSSSTLSSLTAVTSL RTLILSNNNMEGSFPIQELIKLKNLEMLDLSGNRFNASIQGSNLQHLHISIVATNLSC " gene 2785550..2786587 /locus_tag="TCM_027297" /note="dbxref CacaoGD:Thecc1EG027297" mRNA 2785550..2786587 /locus_tag="TCM_027297" /product="Receptor like protein 1, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027070t1" /inference="similar to AA sequence:Phytozome:Glyma12g36240.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1042t1" CDS 2785709..2786548 /locus_tag="TCM_027297" /note="paralog of Thecc1EG027070t1" /codon_start=1 /product="Receptor like protein 1, putative" /protein_id="EOY25930.1" /db_xref="Phytozome:Glyma12g36240.1" /db_xref="TAIR:AT1G07390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXH8" /translation="MQVYIMDLSRNRLYGSIPSCFANISFGMAAGESSFVTSLIRFNA IISLSSYYSSNLELNSDTSGSQRPYRQAEAEFTTKYRHNSYQGDILHYMFGLDLSCNE LSGDIPAQVGELKNLRALNLSHNKLSGSIPVSFSSLKQIESLDLSSNNLSGQIPSQLT ELHFLSIFNVSYNNLSGMTPDKGQFATFDRSSYEGNPSLCGSLIEKSCNSSEVPPTTV PFDGEENDTMVDMVAFGWTFSASYAMVLLALAAVLCINPHWRYLWFNSVDWIIYLCFK MFS" gene complement(2786898..2787957) /locus_tag="TCM_027298" /note="dbxref CacaoGD:Thecc1EG027298" mRNA complement(join(2786898..2787721,2787841..2787957)) /locus_tag="TCM_027298" /product="Serine/threonine-protein kinase bri1, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027065t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034283001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.72 coverage" CDS complement(join(2787190..2787721,2787841..2787866)) /locus_tag="TCM_027298" /note="paralog of Thecc1EG027065t1" /codon_start=1 /product="Serine/threonine-protein kinase bri1, putative" /protein_id="EOY25931.1" /db_xref="Phytozome:GSVIVT01034283001" /db_xref="TAIR:AT3G53240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RVB0" /translation="MQVKRRWTKYLLSGLDLSCNNLIGQIPSTLGSLSSIHAPNLSHN GLVGSIPTSFSNLVEVESLDLSCNHLSGNIPSELTSLKYLEVFNVARNSLSCKIPDTK QFSTFEESSYKENPLLCGLALKKNCTETPHSSMVSLDESDEKWFELDSTVFYATFAVT YILLLLRFVIVLFINPLAKKTVPFR" gene complement(2788112..2790546) /locus_tag="TCM_027299" /note="dbxref CacaoGD:Thecc1EG027299" mRNA complement(join(2788112..2788139,2788263..2788652, 2788764..2788810,2790201..2790359,2790464..2790546)) /locus_tag="TCM_027299" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03235t00002" CDS complement(join(2788340..2788652,2788764..2788810, 2790201..2790311)) /locus_tag="TCM_027299" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25932.1" /translation="MEMESMSHNSSFCSLLDSSLPQATLLAHKSLLWLLFLIGSTKPD DMPIFLDQRFPLADLIKMQETVSKNKDAGENDDEDDDGGDQTDDEDDEAESEEESDDN EDDSDDDVEAHSDEESDDDDEDDDDDEDDDDEEDDDDDNDSDEDEQEQPPPKKK" gene complement(2791182..2797400) /locus_tag="TCM_027300" /note="dbxref CacaoGD:Thecc1EG027300" mRNA complement(join(2791182..2791849,2792508..2792612, 2792840..2792934,2794233..2794357,2794930..2795021, 2795135..2795185,2795602..2795798,2795966..2796146, 2796288..2796353,2796934..2797374)) /locus_tag="TCM_027300" /product="Plastid transcriptionally active 17 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017471001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016646t1" /inference="similar to AA sequence:ricco:29841.m002922" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02483t00001" CDS complement(join(2791712..2791849,2792508..2792612, 2792840..2792934,2794233..2794357,2794930..2795021, 2795135..2795185,2795602..2795798,2795966..2796146, 2796288..2796353,2796934..2797284)) /locus_tag="TCM_027300" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29841.m002922; paralog of Thecc1EG016646t1" /codon_start=1 /product="Plastid transcriptionally active 17 isoform 1" /protein_id="EOY25933.1" /db_xref="TAIR:AT1G80480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N182" /translation="MATLSMDIATTFFNITTRCCGHHHRTPPLSGIRTTLLPLFFKPT TIKTQPLSSKTTSSLPRTIITSSNCCKAHRRRFSVSATATTTPQSEDSDVSTKIPPDN RIPATIITGFLGSGKTTLLNHILTADHGKRIAVIENEYGEIDIDGSLVAAKAAGAEDI VMLNNGCLCCTVRGDLVRMIAELVDKRKGKFDHIVIETTGLANPAPIIQTFYAEDQIF NDVKLDGVVTLVDAKHAGFHLDEVKPKGVVNEAVEQIAYADRIIVNKTDLVGEPEIAT LVKRIRNINGMAHLKRTEFGKVDLEYVLGIGGFDLERIESSVNDEGAKDDHAHHGHDQ DHDHDHHHHHHHHDEQHHEHEHHHDHHSHDHTHDPGVSSVSIVCEGSLDLEKANIWLG TLLLERSEDIYRMKGLLSVQGMNERFVFQGVHDIFQGSPDRLWGPDEPRVNKIVFIGK NLNAQELESGFKACLL" mRNA complement(join(<2792882..2792934,2794233..2794357, 2794930..2795021,2795135..2795185,2795602..2795798, 2795966..2796103,2796317..2796353,2796934..2797400)) /locus_tag="TCM_027300" /product="Plastid transcriptionally active 17 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017471001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016646t1" /inference="similar to AA sequence:ricco:29841.m002922" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc348t2; inference alignment:Newbler:10:TSA:cgbaP1_g02483t00001" CDS complement(join(<2792882..2792934,2794233..2794357, 2794930..2795021,2795135..2795185,2795602..2795798, 2795966..2796103,2796317..2796353,2796934..2797284)) /locus_tag="TCM_027300" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29841.m002922; paralog of Thecc1EG016646t1" /codon_start=1 /product="Plastid transcriptionally active 17 isoform 2" /protein_id="EOY25934.1" /db_xref="TAIR:AT1G80480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N182" /translation="MATLSMDIATTFFNITTRCCGHHHRTPPLSGIRTTLLPLFFKPT TIKTQPLSSKTTSSLPRTIITSSNCCKAHRRRFSVSATATTTPQSEDSDVSTKIPPDN RIPATIITGFLGSGKTTLLNHILTADHAAGAEDIVMLNNGCLCCTVRGDLVRMIAELV DKRKGKFDHIVIETTGLANPAPIIQTFYAEDQIFNDVKLDGVVTLVDAKHAGFHLDEV KPKGVVNEAVEQIAYADRIIVNKTDLVGEPEIATLVKRIRNINGMAHLKRTEFGKVDL EYVLGIGGFDLERIESSVNDEGAKDDHAHHGHDQDHDHDHHHHHHHHDEQHHEHEHHH DHHSHDHTHDPGVS" mobile_element complement(2794257..2794317) /note="source:CACAO_M_E22201_F289_scaffold_3 835 893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2797971..2798068) /note="source:CACAO_MITE_S153_scaffold_6 405 505" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(2798144..2798376) /note="source:CACAO_MITE_S153_scaffold_6 4 253" /mobile_element_type="transposon:TIR/MITE" mobile_element 2798290..2798390 /note="source:scaffold_2_CACTA_0239 2129 2220" /mobile_element_type="transposon:TIR/CACTA" gene complement(2799442..2800203) /locus_tag="TCM_027301" /note="dbxref CacaoGD:Thecc1EG027301" mRNA complement(join(2799442..2799786,2799994..2800203)) /locus_tag="TCM_027301" /product="Early nodulin-like protein 22" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s04290.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006408t1" /inference="similar to AA sequence:ricco:30116.m000378" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1061t1" CDS complement(join(2799563..2799786,2799994..2800177)) /locus_tag="TCM_027301" /note="dbxref ricco:30116.m000378; paralog of Thecc1EG006408t1" /codon_start=1 /product="Early nodulin-like protein 22" /protein_id="EOY25935.1" /db_xref="TAIR:AT1G17800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SRJ0" /translation="MRKAIRGSSILALGMLLLMLQYEATHSAPVTYKVGDDNGWDLSI SLQAWTRGKDFHAGDILEFIYDEQLFNVVVVDKKGHDTCTANDGAMEFDSGDDKIPLA FGANYFICNTQPDLCAAGYKMAINATAPPPSSK" mobile_element 2801446..2801892 /note="source:CACAO_on_E737_scaffold_10 1 418" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(2803878..2803893) /note="source:scaffold_9_CACTA_0934 9896 9990" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2803894..2803968 /note="source:CACAO_hAT_E410_scaffold_1 2400 2474" /mobile_element_type="transposon:TIR/hAT" mobile_element 2805112..2805835 /note="source:INTACT687_F13_scaffold_3-int 1296 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2806902..2810923 /note="source:CACAO_M_S_E66814_F2_scaffold_6 1 4022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2810962..2811073 /note="source:CACAO_M_S_E90022_F9_scaffold_8 3118 3176" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2814031..2823679 /locus_tag="TCM_027303" /note="dbxref CacaoGD:Thecc1EG027303" mRNA join(2814031..2814260,2816069..2816246,2816329..2816457, 2816560..2816767,2817096..2817242,2817713..2817787, 2818236..2818307,2819040..2819111,2819477..2819548, 2819631..2819702,2819961..2820032,2820681..2820752, 2821442..2821585,2821922..2821993,2822720..2822866, 2822958..2823679) /locus_tag="TCM_027303" /product="Leucine-rich repeat family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017472001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038202t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017472001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04720t00001" CDS join(2814253..2814260,2816069..2816246,2816329..2816457, 2816560..2816767,2817096..2817242,2817713..2817787, 2818236..2818307,2819040..2819111,2819477..2819548, 2819631..2819702,2819961..2820032,2820681..2820752, 2821442..2821585,2821922..2821993,2822720..2822866, 2822958..2823142) /locus_tag="TCM_027303" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG038202t1" /codon_start=1 /product="Leucine-rich repeat family protein isoform 1" /protein_id="EOY25936.1" /db_xref="Phytozome:GSVIVT01017472001" /db_xref="TAIR:AT1G15740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1Q4" /translation="MLRKRDQLDNEDGLHRGVSGRYCKSGSSKWLTTTFTRPVVESQR GKGKCPSLMELCTYKIREDIDNYGSFSMLPRDLSQQIFNELVNSQCLTDVSLKAFRDC ALQDLYLGEYPGVNDNWMDVISSQGSSLLSLDLSASDISDSGLIYLKDCANLQALNLN YCDQISDRGLQHISGLSDLTSLSFRRNSGITAQGMTAFSSLVNLLKLDLEKCPGIHGG LVHIKGLTKLECLNIKWCNCITDADMKPLSGLTNLKSLQISCSKVTDFGITYLKGLQK LSILNLEGCPVTASCLDSLSALASLLYLNLSRCNLSDDGCEKFSQLGNLKVVNLGFND ISDSCLVHLKGLTNLESLNLDSCRIGDDGLVHLTGLQRLKCLELSDTEVGSNGLRHLS GLGNLESINLSFTIVTDGGLRKLSGLSSLKSLNLDARQITDAGLAALTSLTGLTHLDL FGARITDSGTNYLRNFKNLRSLEICGGGLTDAGVKNIKDLSSLSLLNLSQNCNLTDKT LEMISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIRKLQSADLP NLVNFRPE" mRNA join(2815703..2816246,2816329..2816457,2816560..2816767, 2817096..2817242,2817713..2817787,2818236..2818307, 2819040..2819111,2819477..2819548,2819631..2819702, 2819961..2820032,2820681..2820752,2821442..>2821585) /locus_tag="TCM_027303" /product="Leucine-rich repeat family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017472001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038202t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017472001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1402t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1137t2; inference alignment:Newbler:10:TSA:cgbaB_g04720t00001" CDS join(2816049..2816246,2816329..2816457,2816560..2816767, 2817096..2817242,2817713..2817787,2818236..2818307, 2819040..2819111,2819477..2819548,2819631..2819702, 2819961..2820032,2820681..2820752,2821442..>2821584) /locus_tag="TCM_027303" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG038202t1" /codon_start=1 /product="Leucine-rich repeat family protein isoform 2" /protein_id="EOY25937.1" /db_xref="Phytozome:GSVIVT01017472001" /db_xref="TAIR:AT1G15740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1Q4" /translation="MGGACSRKRDQLDNEDGLHRGVSGRYCKSGSSKWLTTTFTRPVV ESQRGKGKCPSLMELCTYKIREDIDNYGSFSMLPRDLSQQIFNELVNSQCLTDVSLKA FRDCALQDLYLGEYPGVNDNWMDVISSQGSSLLSLDLSASDISDSGLIYLKDCANLQA LNLNYCDQISDRGLQHISGLSDLTSLSFRRNSGITAQGMTAFSSLVNLLKLDLEKCPG IHGGLVHIKGLTKLECLNIKWCNCITDADMKPLSGLTNLKSLQISCSKVTDFGITYLK GLQKLSILNLEGCPVTASCLDSLSALASLLYLNLSRCNLSDDGCEKFSQLGNLKVVNL GFNDISDSCLVHLKGLTNLESLNLDSCRIGDDGLVHLTGLQRLKCLELSDTEVGSNGL RHLSGLGNLESINLSFTIVTDGGLRKLSGLSSLKSLNLDARQITDAGLAALT" gene complement(2824655..2830646) /locus_tag="TCM_027304" /note="dbxref CacaoGD:Thecc1EG027304" mRNA complement(join(2824655..2824979,2825059..2825163, 2825317..2825591,2826074..2826240,2826321..2826509, 2826812..2826907,2826987..2827115,2827338..2827517, 2827644..2827754,2828959..2829105,2829286..2829366, 2829469..2829634)) /locus_tag="TCM_027304" /product="TOPLESS-related 1 isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027305t4" /inference="similar to AA sequence:Phytozome:POPTR_0001s20770.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b026408t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1548t1" mRNA complement(join(2824792..2824979,2825059..2825166, 2825317..2825591,2826074..2826240,2826321..2826509, 2826812..2826907,2826987..2827115,2827338..2827517, 2827644..2827754,2828959..2829105,2829286..2829366, 2829469..2829512,2829913..2830646)) /locus_tag="TCM_027304" /product="TOPLESS-related 1 isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027305t4" /inference="similar to AA sequence:ricco:29841.m002924" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1548t1" mRNA complement(join(2824794..2824979,2825317..2825591, 2826074..2826240,2826321..2826509,2826812..2826907, 2826987..2827115,2827338..2827517,2827644..2827754, 2828959..2829105,2829286..2829366,2829469..2829634)) /locus_tag="TCM_027304" /product="TOPLESS-related 1 isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027305t4" /inference="similar to AA sequence:Phytozome:POPTR_0001s20770.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1548t1; alternateUTRof:Thecc1EG027304t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1548t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1t16" CDS complement(join(2825378..2825591,2826074..2826240, 2826321..2826509,2826812..2826907,2826987..2827115, 2827338..2827517,2827644..2827754,2828959..2829105, 2829286..2829366,2829469..2829512,2829913..2830114)) /locus_tag="TCM_027304" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29841.m002924; paralog of Thecc1EG027305t4" /codon_start=1 /product="TOPLESS-related 1 isoform 1" /protein_id="EOY25938.1" /db_xref="TAIR:AT1G80490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10NY2" /translation="MSGLGRDETNWHPYRVCNEPTRQQKGFNSKPLITKHSTPNPRIR PIRPQPQTVGIAQPFASAHLHKNGRKFTRLGRLAEAPKPTINPISAATAAGIADRGAS VVTIAAMNGDAWSLGNVEPRISEESSDKSKVWKLTEISEPSQCRSLRLPENSRVTKIS RLIFTNSGNAILALASNAIHLLWKWQRSDLNSNGKATATVPPQLWRPSSGILMKNDVA GTNHEDAVPCFALSKNDSYVISASGGKISLFNLLTFTTMVTFMPPPPAATFLAFHPHD NNIMAIGMDNSTIVIYNVRVNEVIAKLRGHSKRITGLAFSHVLNVLVSSGADSQLCVW NTDGWEMQEARFLQVSAWRTPTAQSDMAVQFHQDQMHFLVVDETQLAIYETTKLECLK QWVPRESSAPITHATFSCDSQLVYASLLDATVCVFSAVNLRLCCRINPSAYLPASVSS NVHPLVIAAHPSEPNGFALGLSDGGVLVFEPLESENKWGVPPPVENGSASSVAATPSV GAPGPEQAQRR" CDS complement(join(2825378..2825591,2826074..2826240, 2826321..2826509,2826812..2826907,2826987..2827115, 2827338..2827517,2827644..2827754,2828959..2829105, 2829286..2829288)) /locus_tag="TCM_027304" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG027305t4" /codon_start=1 /product="TOPLESS-related 1 isoform 2" /protein_id="EOY25939.1" /db_xref="Phytozome:POPTR_0001s20770.1" /db_xref="TAIR:AT1G80490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10NY2" /translation="MNGDAWSLGNVEPRISEESSDKSKVWKLTEISEPSQCRSLRLPE NSRVTKISRLIFTNSGNAILALASNAIHLLWKWQRSDLNSNGKATATVPPQLWRPSSG ILMKNDVAGTNHEDAVPCFALSKNDSYVISASGGKISLFNLLTFTTMVTFMPPPPAAT FLAFHPHDNNIMAIGMDNSTIVIYNVRVNEVIAKLRGHSKRITGLAFSHVLNVLVSSG ADSQLCVWNTDGWEMQEARFLQVSAWRTPTAQSDMAVQFHQDQMHFLVVDETQLAIYE TTKLECLKQWVPRESSAPITHATFSCDSQLVYASLLDATVCVFSAVNLRLCCRINPSA YLPASVSSNVHPLVIAAHPSEPNGFALGLSDGGVLVFEPLESENKWGVPPPVENGSAS SVAATPSVGAPGPEQAQRR" CDS complement(join(2825378..2825591,2826074..2826240, 2826321..2826509,2826812..2826907,2826987..2827115, 2827338..2827517,2827644..2827754,2828959..2829105, 2829286..2829288)) /locus_tag="TCM_027304" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG027305t4" /codon_start=1 /product="TOPLESS-related 1 isoform 2" /protein_id="EOY25940.1" /db_xref="Phytozome:POPTR_0001s20770.1" /db_xref="TAIR:AT1G80490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10NY2" /translation="MNGDAWSLGNVEPRISEESSDKSKVWKLTEISEPSQCRSLRLPE NSRVTKISRLIFTNSGNAILALASNAIHLLWKWQRSDLNSNGKATATVPPQLWRPSSG ILMKNDVAGTNHEDAVPCFALSKNDSYVISASGGKISLFNLLTFTTMVTFMPPPPAAT FLAFHPHDNNIMAIGMDNSTIVIYNVRVNEVIAKLRGHSKRITGLAFSHVLNVLVSSG ADSQLCVWNTDGWEMQEARFLQVSAWRTPTAQSDMAVQFHQDQMHFLVVDETQLAIYE TTKLECLKQWVPRESSAPITHATFSCDSQLVYASLLDATVCVFSAVNLRLCCRINPSA YLPASVSSNVHPLVIAAHPSEPNGFALGLSDGGVLVFEPLESENKWGVPPPVENGSAS SVAATPSVGAPGPEQAQRR" gene complement(2826321..2841036) /locus_tag="TCM_027305" /note="dbxref CacaoGD:Thecc1EG027305" mRNA complement(join(2826321..2826455,2832157..2832206, 2832488..2832583,2832663..2832791,2832937..2833117, 2833148..2833170,2833233..2833343,2834604..2834750, 2834941..2835048,2835128..2835286,2835366..2835600, 2835730..2835857,2835974..2836069,2836149..2836244, 2836332..2836405,2836493..2836571,2836661..2836770, 2836889..2837054,2837184..2837293,2837443..2837569, 2837656..2837833,2839165..2839323,2839410..2839523, 2839649..2839828,2839983..2840196)) /locus_tag="TCM_027305" /product="Transducin family protein / WD-40 repeat family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017487001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038124t4" /inference="similar to AA sequence:frave:gene15974" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1t14; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1t17; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2240t1" mRNA complement(join(2826870..2826907,2826987..2827115, 2827338..2827424,2833024..2833117,2833148..2833170, 2833233..2833343,2834604..2834750,2834941..2835048, 2835128..2835286,2835366..2835600,2835730..2835857, 2835974..2836069,2836149..2836244,2836332..2836405, 2836493..2836571,2836661..2836770,2836889..2837054, 2837184..2837293,2837443..2837569,2837656..2837833, 2839165..2839323,2839410..2839523,2839649..2839828, 2839983..2840196)) /locus_tag="TCM_027305" /product="Transducin family protein / WD-40 repeat family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017487001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038124t4" /inference="similar to AA sequence:frave:gene15974" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1t14; alternateUTRof:Thecc1EG027305t5; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1t17; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2240t1" mRNA complement(join(2830234..2830632,2831032..2831306, 2831771..2831937,2832018..2832206,2832488..2832583, 2832663..2832791,2832937..2833116,2833233..2833343, 2834604..2834750,2834941..2835048,2835128..2835286, 2835366..2835600,2835730..2835857,2835974..2836069, 2836149..2836244,2836332..2836405,2836493..2836571, 2836661..2836770,2836889..2837054,2837184..2837293, 2837443..2837569,2837656..2837833,2839165..2839323, 2839410..2839523,2839649..2839828,2839983..2840089, 2840538..2840712)) /locus_tag="TCM_027305" /product="TOPLESS-related 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017487001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038124t4" /inference="similar to AA sequence:frave:gene15974" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2240t1; alternateUTRof:Thecc1EG027305t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2240t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1t17" mRNA complement(join(2830234..2831306,2831771..2831937, 2832018..2832206,2832488..2832583,2832663..2832791, 2832937..2833116,2833233..2833343,2834604..2834750, 2834941..2835048,2835128..2835286,2835366..2835600, 2835730..2835857,2835974..2836069,2836149..2836244, 2836332..2836405,2836493..2836571,2836661..2836770, 2836889..2837054,2837184..2837293,2837443..2837569, 2837656..2837833,2839165..2839323,2839410..2839523, 2839649..2839828,2839983..2840089,2840538..2840712)) /locus_tag="TCM_027305" /product="TOPLESS-related 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017487001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038124t4" /inference="similar to AA sequence:frave:gene15974" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b026409t1a2; alternateUTRof:Thecc1EG027305t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2240t1" mRNA complement(join(2830694..2830902,2831032..2831306, 2831771..2831937,2832018..2832206,2832488..2832583, 2832663..2832791,2832937..2833116,2833233..2833343, 2834604..2834750,2834941..2835048,2835128..2835286, 2835366..2835600,2835730..2835857,2835974..2836069, 2836149..2836244,2836332..2836405,2836493..2836571, 2836661..2836770,2836889..2837054,2837184..2837293, 2837443..2837569,2837656..2837833,2839165..2839323, 2839410..2839523,2839649..2839828,2839983..2840089, 2840538..2841036)) /locus_tag="TCM_027305" /product="TOPLESS-related 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017487001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038124t4" /inference="similar to AA sequence:frave:gene15974" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2240t1" mRNA complement(join(2830734..2831306,2831771..2831937, 2832018..2832206,2832488..2832583,2832663..2832791, 2832937..2833116,2833233..2833343,2834604..2834750, 2834941..2835048,2835128..2835286,2835366..2835600, 2835730..2835857,2835974..2836069,2836149..2836244, 2836332..2836405,2836493..2836571,2836661..2836770, 2836889..2837054,2837184..2837293,2837443..2837569, 2837656..2837833,2839165..2839323,2839410..2839523, 2839649..2839828,2839983..2840089,2840538..2840712)) /locus_tag="TCM_027305" /product="TOPLESS-related 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017487001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038124t4" /inference="similar to AA sequence:frave:gene15974" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2240t3; alternateUTRof:Thecc1EG027305t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2240t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1t17" CDS complement(join(2831096..2831306,2831771..2831937, 2832018..2832206,2832488..2832583,2832663..2832791, 2832937..2833116,2833233..2833343,2834604..2834750, 2834941..2835048,2835128..2835286,2835366..2835600, 2835730..2835857,2835974..2836069,2836149..2836244, 2836332..2836405,2836493..2836571,2836661..2836770, 2836889..2837054,2837184..2837293,2837443..2837569, 2837656..2837833,2839165..2839323,2839410..2839523, 2839649..2839828,2839983..2840062)) /locus_tag="TCM_027305" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene15974; paralog of Thecc1EG038124t4" /codon_start=1 /product="TOPLESS-related 1 isoform 1" /protein_id="EOY25941.1" /db_xref="TAIR:AT1G80490.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10NY2" /translation="MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDE VHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLK VFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDK LQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANN PLLGSLPKAGGFPPLGAHGPFQPTPAQVPAPLAGWMSNPSTVTHPAVSGGGAIGLGAS SIPAALKHPRTPPTNPSVDYPPGDSDHVSKRTRPMGISDEVNLPVNVLPVTFPGHGHS QTFNAPDDLPKTVARTLNQGSSPMSMDFHPKQQTLLLVGTNVGEIALWEVGSREQLVL KNFRVWELSACSMPLQAALAKDPAVSVNRVIWNQPHPEGSLFGVAYSRHIVQIYSYHG GDDVRQHLEIDAHVGGVNDLAFSLPNKQLCVITCGDDKTIKVWDASTGAKQFIFEGHE APVYSVCPHHKENIQFIFSTAVDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTR LFSCGTSKEGDSFIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRYLAAGDDFSIK FWDMDNISLLTSIDADGGLPASPRIRFNKDGSLLAVSTNDNGIKILANSDGMRLLRTM ENLSYDASRASEAPKPTINSISAAAAAAAAVAATSAGIADRSASVVAIAAMNGDARSL GDVKPRITEESSDKSKIWKLTEISEPSQCRSLRLPENLRVTKISRLIFTNSGNAILAL ASNAIHLLWKWQRSERNTIGKATASVPPQLWQPSSGILMTNDVADTNPEEAVPCFALS KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQ IYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADSQLCVWNTDGWEKQKARFLQ VSAGRTPMAQSDTRVQFHQDQIHFLVVHETQLAIYETTKLECVKQWVPRESSAPITHA TFSCDSQLVYASFLDATVCVFSAANLRLRCRINPSAYLPASISSNVHPLVIAAHPSEP NEFALGLSDGGVHVFEPLESENKWGVPPPVENGSASSVAATPSVGAPGPEQAQR" CDS complement(join(2831096..2831306,2831771..2831937, 2832018..2832206,2832488..2832583,2832663..2832791, 2832937..2833116,2833233..2833343,2834604..2834750, 2834941..2835048,2835128..2835286,2835366..2835600, 2835730..2835857,2835974..2836069,2836149..2836244, 2836332..2836405,2836493..2836571,2836661..2836770, 2836889..2837054,2837184..2837293,2837443..2837569, 2837656..2837833,2839165..2839323,2839410..2839523, 2839649..2839828,2839983..2840062)) /locus_tag="TCM_027305" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene15974; paralog of Thecc1EG038124t4" /codon_start=1 /product="TOPLESS-related 1 isoform 1" /protein_id="EOY25942.1" /db_xref="TAIR:AT1G80490.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10NY2" /translation="MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDE VHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLK VFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDK LQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANN PLLGSLPKAGGFPPLGAHGPFQPTPAQVPAPLAGWMSNPSTVTHPAVSGGGAIGLGAS SIPAALKHPRTPPTNPSVDYPPGDSDHVSKRTRPMGISDEVNLPVNVLPVTFPGHGHS QTFNAPDDLPKTVARTLNQGSSPMSMDFHPKQQTLLLVGTNVGEIALWEVGSREQLVL KNFRVWELSACSMPLQAALAKDPAVSVNRVIWNQPHPEGSLFGVAYSRHIVQIYSYHG GDDVRQHLEIDAHVGGVNDLAFSLPNKQLCVITCGDDKTIKVWDASTGAKQFIFEGHE APVYSVCPHHKENIQFIFSTAVDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTR LFSCGTSKEGDSFIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRYLAAGDDFSIK FWDMDNISLLTSIDADGGLPASPRIRFNKDGSLLAVSTNDNGIKILANSDGMRLLRTM ENLSYDASRASEAPKPTINSISAAAAAAAAVAATSAGIADRSASVVAIAAMNGDARSL GDVKPRITEESSDKSKIWKLTEISEPSQCRSLRLPENLRVTKISRLIFTNSGNAILAL ASNAIHLLWKWQRSERNTIGKATASVPPQLWQPSSGILMTNDVADTNPEEAVPCFALS KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQ IYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADSQLCVWNTDGWEKQKARFLQ VSAGRTPMAQSDTRVQFHQDQIHFLVVHETQLAIYETTKLECVKQWVPRESSAPITHA TFSCDSQLVYASFLDATVCVFSAANLRLRCRINPSAYLPASISSNVHPLVIAAHPSEP NEFALGLSDGGVHVFEPLESENKWGVPPPVENGSASSVAATPSVGAPGPEQAQR" CDS complement(join(2831096..2831306,2831771..2831937, 2832018..2832206,2832488..2832583,2832663..2832791, 2832937..2833116,2833233..2833343,2834604..2834750, 2834941..2835048,2835128..2835286,2835366..2835600, 2835730..2835857,2835974..2836069,2836149..2836244, 2836332..2836405,2836493..2836571,2836661..2836770, 2836889..2837054,2837184..2837293,2837443..2837569, 2837656..2837833,2839165..2839323,2839410..2839523, 2839649..2839828,2839983..2840062)) /locus_tag="TCM_027305" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene15974; paralog of Thecc1EG038124t4" /codon_start=1 /product="TOPLESS-related 1 isoform 1" /protein_id="EOY25943.1" /db_xref="TAIR:AT1G80490.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10NY2" /translation="MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDE VHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLK VFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDK LQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANN PLLGSLPKAGGFPPLGAHGPFQPTPAQVPAPLAGWMSNPSTVTHPAVSGGGAIGLGAS SIPAALKHPRTPPTNPSVDYPPGDSDHVSKRTRPMGISDEVNLPVNVLPVTFPGHGHS QTFNAPDDLPKTVARTLNQGSSPMSMDFHPKQQTLLLVGTNVGEIALWEVGSREQLVL KNFRVWELSACSMPLQAALAKDPAVSVNRVIWNQPHPEGSLFGVAYSRHIVQIYSYHG GDDVRQHLEIDAHVGGVNDLAFSLPNKQLCVITCGDDKTIKVWDASTGAKQFIFEGHE APVYSVCPHHKENIQFIFSTAVDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTR LFSCGTSKEGDSFIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRYLAAGDDFSIK FWDMDNISLLTSIDADGGLPASPRIRFNKDGSLLAVSTNDNGIKILANSDGMRLLRTM ENLSYDASRASEAPKPTINSISAAAAAAAAVAATSAGIADRSASVVAIAAMNGDARSL GDVKPRITEESSDKSKIWKLTEISEPSQCRSLRLPENLRVTKISRLIFTNSGNAILAL ASNAIHLLWKWQRSERNTIGKATASVPPQLWQPSSGILMTNDVADTNPEEAVPCFALS KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQ IYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADSQLCVWNTDGWEKQKARFLQ VSAGRTPMAQSDTRVQFHQDQIHFLVVHETQLAIYETTKLECVKQWVPRESSAPITHA TFSCDSQLVYASFLDATVCVFSAANLRLRCRINPSAYLPASISSNVHPLVIAAHPSEP NEFALGLSDGGVHVFEPLESENKWGVPPPVENGSASSVAATPSVGAPGPEQAQR" CDS complement(join(2831096..2831306,2831771..2831937, 2832018..2832206,2832488..2832583,2832663..2832791, 2832937..2833116,2833233..2833343,2834604..2834750, 2834941..2835048,2835128..2835286,2835366..2835600, 2835730..2835857,2835974..2836069,2836149..2836244, 2836332..2836405,2836493..2836571,2836661..2836770, 2836889..2837054,2837184..2837293,2837443..2837569, 2837656..2837833,2839165..2839323,2839410..2839523, 2839649..2839828,2839983..2840062)) /locus_tag="TCM_027305" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene15974; paralog of Thecc1EG038124t4" /codon_start=1 /product="TOPLESS-related 1 isoform 1" /protein_id="EOY25944.1" /db_xref="TAIR:AT1G80490.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10NY2" /translation="MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDE VHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLK VFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDK LQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANN PLLGSLPKAGGFPPLGAHGPFQPTPAQVPAPLAGWMSNPSTVTHPAVSGGGAIGLGAS SIPAALKHPRTPPTNPSVDYPPGDSDHVSKRTRPMGISDEVNLPVNVLPVTFPGHGHS QTFNAPDDLPKTVARTLNQGSSPMSMDFHPKQQTLLLVGTNVGEIALWEVGSREQLVL KNFRVWELSACSMPLQAALAKDPAVSVNRVIWNQPHPEGSLFGVAYSRHIVQIYSYHG GDDVRQHLEIDAHVGGVNDLAFSLPNKQLCVITCGDDKTIKVWDASTGAKQFIFEGHE APVYSVCPHHKENIQFIFSTAVDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTR LFSCGTSKEGDSFIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRYLAAGDDFSIK FWDMDNISLLTSIDADGGLPASPRIRFNKDGSLLAVSTNDNGIKILANSDGMRLLRTM ENLSYDASRASEAPKPTINSISAAAAAAAAVAATSAGIADRSASVVAIAAMNGDARSL GDVKPRITEESSDKSKIWKLTEISEPSQCRSLRLPENLRVTKISRLIFTNSGNAILAL ASNAIHLLWKWQRSERNTIGKATASVPPQLWQPSSGILMTNDVADTNPEEAVPCFALS KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQ IYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADSQLCVWNTDGWEKQKARFLQ VSAGRTPMAQSDTRVQFHQDQIHFLVVHETQLAIYETTKLECVKQWVPRESSAPITHA TFSCDSQLVYASFLDATVCVFSAANLRLRCRINPSAYLPASISSNVHPLVIAAHPSEP NEFALGLSDGGVHVFEPLESENKWGVPPPVENGSASSVAATPSVGAPGPEQAQR" CDS complement(join(2833156..2833170,2833233..2833343, 2834604..2834750,2834941..2835048,2835128..2835286, 2835366..2835600,2835730..2835857,2835974..2836069, 2836149..2836244,2836332..2836405,2836493..2836571, 2836661..2836770,2836889..2837054,2837184..2837293, 2837443..2837569,2837656..2837833,2839165..2839323, 2839410..2839523,2839649..2839828,2839983..2840062)) /locus_tag="TCM_027305" /note="encoded by transcript variant 5; alternatively spliced; dbxref frave:gene15974; paralog of Thecc1EG038124t4" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein isoform 5" /protein_id="EOY25945.1" /db_xref="TAIR:AT1G15750.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10NY2" /translation="MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDE VHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLK VFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDK LQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANN PLLGSLPKAGGFPPLGAHGPFQPTPAQVPAPLAGWMSNPSTVTHPAVSGGGAIGLGAS SIPAALKHPRTPPTNPSVDYPPGDSDHVSKRTRPMGISDEVNLPVNVLPVTFPGHGHS QTFNAPDDLPKTVARTLNQGSSPMSMDFHPKQQTLLLVGTNVGEIALWEVGSREQLVL KNFRVWELSACSMPLQAALAKDPAVSVNRVIWNQPHPEGSLFGVAYSRHIVQIYSYHG GDDVRQHLEIDAHVGGVNDLAFSLPNKQLCVITCGDDKTIKVWDASTGAKQFIFEGHE APVYSVCPHHKENIQFIFSTAVDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTR LFSCGTSKEGDSFIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRYLAAGDDFSIK FWDMDNISLLTSIDADGGLPASPRIRFNKDGSLLAVSTNDNGIKILANSDGMRLLRTM ENLSYDASRASEAPKPTINSISAAAAAAAAVAATSAGIADRSASVVAIAAMNGDARSL GDVKPRITEESSDKSKIWKLTEISEPSQCRSLRLPENLRVTKISRLIFTNSGNAILAL ASNAIHLLWKWQRSERNTIGKNILK" CDS complement(join(2833156..2833170,2833233..2833343, 2834604..2834750,2834941..2835048,2835128..2835286, 2835366..2835600,2835730..2835857,2835974..2836069, 2836149..2836244,2836332..2836405,2836493..2836571, 2836661..2836770,2836889..2837054,2837184..2837293, 2837443..2837569,2837656..2837833,2839165..2839323, 2839410..2839523,2839649..2839828,2839983..2840062)) /locus_tag="TCM_027305" /note="encoded by transcript variant 6; alternatively spliced; dbxref frave:gene15974; paralog of Thecc1EG038124t4" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein isoform 5" /protein_id="EOY25946.1" /db_xref="TAIR:AT1G15750.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10NY2" /translation="MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDE VHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLK VFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDK LQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANN PLLGSLPKAGGFPPLGAHGPFQPTPAQVPAPLAGWMSNPSTVTHPAVSGGGAIGLGAS SIPAALKHPRTPPTNPSVDYPPGDSDHVSKRTRPMGISDEVNLPVNVLPVTFPGHGHS QTFNAPDDLPKTVARTLNQGSSPMSMDFHPKQQTLLLVGTNVGEIALWEVGSREQLVL KNFRVWELSACSMPLQAALAKDPAVSVNRVIWNQPHPEGSLFGVAYSRHIVQIYSYHG GDDVRQHLEIDAHVGGVNDLAFSLPNKQLCVITCGDDKTIKVWDASTGAKQFIFEGHE APVYSVCPHHKENIQFIFSTAVDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTR LFSCGTSKEGDSFIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRYLAAGDDFSIK FWDMDNISLLTSIDADGGLPASPRIRFNKDGSLLAVSTNDNGIKILANSDGMRLLRTM ENLSYDASRASEAPKPTINSISAAAAAAAAVAATSAGIADRSASVVAIAAMNGDARSL GDVKPRITEESSDKSKIWKLTEISEPSQCRSLRLPENLRVTKISRLIFTNSGNAILAL ASNAIHLLWKWQRSERNTIGKNILK" mobile_element complement(2842923..2843077) /note="source:scaffold_1_CACTA_0032 2369 2522" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2844994..2845066) /note="source:scaffold_1_CACTA_0029 3766 3840" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2845654..2845723 /note="source:CACAO_on_SS_E42_scaffold_2 17450 17519" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2845661..2845754 /note="source:CACAO_PIF_E119_scaffold_3 4519 4610" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 2845852..2845927 /note="source:CACAO_on_E27_scaffold_1 112 543" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 2845928..2846308 /note="source:CACAO_MITE_S248_scaffold_10 189 586" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(2847024..2847105) /note="source:INTACT1373F_F385_scaffold_8-int 6895 6979" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2852993..2853390) /note="source:scaffold_7_CACTA_0795 2893 3314" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2853040..2853381 /note="source:scaffold_3_CACTA_0377 4801 5176" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2856890..2857009) /note="source:scaffold_7_CACTA_0795 2913 3031" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2857384..2857505 /note="source:scaffold_5_CACTA_0580 11246 11406" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2857506..2857594) /note="source:CACAO_M_E49205_F4_scaffold_6 9380 9463" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2857532..2857635) /note="source:scaffold_1_CACTA_0005 6584 6683" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2857764..2857883) /note="source:scaffold_2_CACTA_0281 4743 4858" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2861848..2861933 /note="source:CACAO_Again_on_E1_scaffold_1 143 230" /mobile_element_type="transposon:TIR/hAT" mobile_element 2861930..2862017 /note="source:scaffold_4_CACTA_0511 5714 5801" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2862009..2862673 /note="source:scaffold_3_CACTA_0398 3749 4393" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2863277..2863961) /note="source:CACAO_M_E49279_F74_scaffold_6 1268 1931" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2864839..2867204 /locus_tag="TCM_027306" /note="dbxref CacaoGD:Thecc1EG027306" mRNA join(2864839..2864941,2865031..2866845,2866992..2867204) /locus_tag="TCM_027306" /product="Transmembrane amino acid transporter family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g00870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019056t2" /inference="similar to AA sequence:TAIR:AT1G80510.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1124t2" CDS 2865032..2866516 /locus_tag="TCM_027306" /note="paralog of Thecc1EG019056t2" /codon_start=1 /product="Transmembrane amino acid transporter family protein" /protein_id="EOY25947.1" /db_xref="TAIR:AT1G80510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8L9" /translation="MDSNYSAIPKGSHVELQIQNEPRDFRSQKRFLLSDDGNWVNDPK VLHDLDDLNDDVDVDLGSDIDDYALVSSTPNKGSGISGAVFNLTTSIIGAGIMALPAT MKVLGIVLGVVLIILMGILSEISVEMLVRFAVSCKAKSYGEVVQIAMGRTARVLSEIC IIVNNAGVLVVYLIIMGDVMSGSVRHLGVFDQWLGHGFWDHRKLLILIVLVVFLAPLC VLDRIDSLSTTSAASVALAVIFVVICSVVALIKLIEGKIEAPRMSPDFGSKKSILDLL VVIPIMSNAYICHFNVQPIYNELEGRSPQKMNRVGRITTVLCVVVYASTAVSGFLLFG KDTEADVLTNFDKDLGIKFSTVLNYIVRVGYILHLVLVFPVIHFSLRQTVDTLVFEGS APLTESRKRSLALTIILLVLIYFGSTMIPNIWTAFKFTGATTAVSLGFTFPALIALKI SQQEEGLSLSRIEKFFSWLMLILAVIVSIAGIIGNIYTIQSKSE" gene complement(2869028..2872347) /locus_tag="TCM_027307" /note="dbxref CacaoGD:Thecc1EG027307" mRNA complement(2869028..2872347) /locus_tag="TCM_027307" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:27446.m000498" /inference="similar to AA sequence:ricco:27446.m000498" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08541t00001" CDS complement(2869768..2872035) /locus_tag="TCM_027307" /note="dbxref ricco:27446.m000498" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY25948.1" /db_xref="TAIR:AT4G02750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67UW7" /translation="MIRCRITPFYSFSTLPLSATRSNQQLHPSKIFKCNETIRRLAKL GRVRDARQVFDSIPQKDSVTWNSMISGYIQNGFLKEANSLFNAFEAKNVRSWTIMLTG YFKYGLINEARMVFESMPERNIVSWNALVSGYVQNGDLRKAREVFDDMPERNVTSWNS LMTGYCRCGMMKEARETFDRMEEGLKNSVSWMVLVSGYVEVKEYREAWGVFLMMLRTG ARPSQALLVVGLSAVSGLNDLDLVLSLRTFGVKLGLEEDVVVGTAVLNAYTRNGGAYE AVKFFELMPEKNEYSWTTMIAAFSHWGKLDDAVALYERYGEKDVAVQTTMMSVYAQKG DVFEARRIFDEILNPNVIAWNAMISGYAQNGMLEEAKEMFFRMPVRNAVSWAAIISGF VQNGSNKGALDLFAELLRTGSVPNHWGFTSALLACANDGDIEAGRQIHSLTIKAGAQN NSFVGNGLISMYAKCKKMEDVSQVFNTMRMRDTISWNSVISGFLENCMLDDAKDIFKK MPKQDVVSWTSIISAYVQAGQGETALKIFLDMLIVGIKPNDLTFTSLLSVCANLAAAK LGQQFHAWIFKYGFSSCLCVCNSLITMYSKCGSIDGLHVFEDMPERDIVTWNAVLTGC AQNGLGKEAVKVFEEMEAAGVPPNEISFLGLLGACTHAGLVEKGRAYFNSMTQDHGMN PSIYHYTCMVDLLGSAGLLSEAEALIENMPVEPDSVIWGALLAACKLHRNMEIGQRVA ERLLKMGDKDMGLTS" mobile_element complement(2872310..2873344) /note="source:INTACT261_F189_scaffold_2-int 11631 12704" /mobile_element_type="retrotransposon:LTR/Copia" gene 2877598..2878717 /locus_tag="TCM_027308" /note="dbxref CacaoGD:Thecc1EG027308" mRNA 2877598..2878717 /locus_tag="TCM_027308" /product="Sterile alpha motif domain-containing protein" /inference="alignment:exonerate- protein:2:ricco:27446.m000497" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038226t1" /inference="similar to AA sequence:ricco:27446.m000497" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1152t1" CDS 2877623..2878207 /locus_tag="TCM_027308" /note="dbxref ricco:27446.m000497; paralog of Thecc1EG038226t1" /codon_start=1 /product="Sterile alpha motif domain-containing protein" /protein_id="EOY25949.1" /db_xref="TAIR:AT1G15760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXM8" /translation="MDWFSWLSKTGLEPSLVYEYGLAFSHNELEEEDIAYFNHEFLQS MGISIAKHRLEILKLARKEKGVSPRAVSRLLLAIKRTKKCLAKYIRTLVHREESALVV VNPRSRSGYANKWRGAMLKRNKKLVMATQGRLLLTNGTPLLVSGPARVESFSSPMVFD YQKEEKKDENEDGYWSTAVEEIRWDSMFQDLKPT" gene complement(2878780..2884613) /locus_tag="TCM_027309" /note="dbxref CacaoGD:Thecc1EG027309" mRNA complement(join(2878780..2879769,2880140..2881038, 2884181..2884613)) /locus_tag="TCM_027309" /product="Major facilitator superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s02330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038227t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s02330.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05613t00001" CDS complement(join(2879304..2879769,2880140..2881038, 2884181..2884510)) /locus_tag="TCM_027309" /note="paralog of Thecc1EG038227t1" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY25950.1" /db_xref="Phytozome:POPTR_0003s02330.1" /db_xref="TAIR:AT1G80530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N6Z0" /translation="MPKLKLKAGSRPPWVGLAAAVWVEISAGNGYNFPLYSSALKSVL GFSQQQITILGVANDFGENVGLLAGIACNKFPPWAVLLVGVFACFLGYGVIWLAVSQT IIGLPYWVLWIALVVAANSNAWFGTAVLVTNMRNFPLSRGTVAGILKGYVGISAAAYT VLYSTLLEQSASKLLLFLTLGIPVICVAMMYFIRPCAPPSGEDSSVHAHFIFTQAASV LLAIYLLTLTVIYDTVSLSDAVSYILLAIVVILLLSPLGIPVKMTLFRANAETITPLA GSTEHLAQECDSTQAEPLLSPSSSASNLGSFFESEYASDVEILLAVGEGAVKKKRRPR RGEDFKFHEAFVKADFWLLWVIYFLGVGSGVTVLNNLAQIGVAFGVDNTTILLSLFSF CNFVGRLGSGALSEHFVRTRAIPRTLWMTCTLIIMVLAFVLYALALNGTLYVSTALLG VCCGFQYNLMVPTASELFGLKHFGVIYNFMLLGNPVGALLLSGLLAGYVYDAEAAKQG SSTCLGPECFRLTFFVLAGICGLGTFLSIFLTIRLRPVYKMLYSSGSFRLPQASDH" mobile_element 2882151..2883221 /note="source:MITE_hAT_18 1 1071" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(2886698..2886741) /note="source:scaffold_4_CACTA_0505 16324 16367" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2886864..2886905) /note="source:CACAO_M_E22429_F345_scaffold_3 1433 1473" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2890058..2890091) /note="source:scaffold_6_CACTA_0717 10372 10405" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2891608..2891957 /note="source:CACAO_Again_on_E20_scaffold_1 1 345" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(2892049..2892508) /note="source:INTACT714_F310_scaffold_9-int 10194 10639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2892267..2892541) /note="source:scaffold_8_CACTA_0858 14180 14489" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2892453..2892902) /note="source:CACAO_on_E216_scaffold_4 71 502" /mobile_element_type="transposon:TIR/hAT" mobile_element 2892509..2892987 /note="source:CACAO_Again_on_S_E16_scaffold_1 341 814" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(2892903..2893001) /note="source:MITE_hAT_24 22 124" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(2892998..2893160) /note="source:scaffold_5_CACTA_0599 409 590" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2893046..2893175 /note="source:MITE_Unknown_5 111 231" /mobile_element_type="transposon:TIR/MITE" mobile_element 2894261..2894545 /note="source:scaffold_7_CACTA_0795 2928 3273" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2894266..2894623) /note="source:scaffold_1_CACTA_0008 14054 14369" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2895870..2896177) /note="source:CACAO_on_E2_scaffold_1 822 1127" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(2896213..2897110) /note="source:CACAO_on_E2_scaffold_1 1 829" /mobile_element_type="transposon:TIR/hAT" mobile_element 2897425..2897584 /note="source:scaffold_4_CACTA_0483 973 1151" /mobile_element_type="transposon:TIR/CACTA" gene complement(2897514..2898799) /locus_tag="TCM_027310" /note="dbxref CacaoGD:Thecc1EG027310" mRNA complement(2897514..2898799) /locus_tag="TCM_027310" /product="Serine-rich protein-related, putative" /inference="alignment:exonerate- protein:2:ricco:27446.m000495" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038230t1" /inference="similar to AA sequence:Phytozome:Glyma04g06860.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc439t1" CDS complement(2898103..2898753) /locus_tag="TCM_027310" /note="paralog of Thecc1EG038230t1" /codon_start=1 /product="Serine-rich protein-related, putative" /protein_id="EOY25951.1" /db_xref="Phytozome:Glyma04g06860.1" /db_xref="TAIR:AT5G11090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FY56" /translation="MSLTTSRSKSHGSQVSTYHYPSPSIYSHHSSSSSSSAFASSSSS FASRSSTFFARATSPTRVNLYGRSSSPQSSPSVRFSINDRPISPGRSISFNKNNNAVS TGAHHQRSRTCLCSPTTHPGSFRCSLHKGLSMSRDHHHQNNRQPTTSSFHSSSALHFR RSAMKNSLVRIGGVEGELVKRALTALIRPSSHQQRRRAAFEPRPSRLSVMSKADDL" mobile_element complement(2899455..2900808) /note="source:CACAO_PIF_E144_scaffold_10 1200 2369" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(2902646..2903732) /locus_tag="TCM_027311" /note="dbxref CacaoGD:Thecc1EG027311" mRNA complement(2902646..2903732) /locus_tag="TCM_027311" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.32 coverage" CDS complement(2903091..2903375) /locus_tag="TCM_027311" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25952.1" /translation="MGQGQSVMFVGMKLALGNSFQSFVQEVGCSDWRLKPKLTDINKD CRLGSCPIKSSLMFVLDLETWPPFITMISFVMLRMQRRAQSFSLCSKKIL" gene complement(2904370..2917739) /locus_tag="TCM_027312" /note="dbxref CacaoGD:Thecc1EG027312" mRNA complement(join(2904370..2905058,2906014..2906102, 2906194..2906394,2907513..2907857,2907994..2909397, 2910283..2910357,2910892..2910962,2912286..2913668, 2914196..2914298,2914670..2914781,2915993..2916111, 2917252..2917368,2917475..2917739)) /locus_tag="TCM_027312" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:27446.m000490" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027316t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s02320.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1300t1" CDS complement(join(2904851..2905058,2906014..2906102, 2906194..2906394,2907513..2907857,2907994..2909397, 2910283..2910357,2910892..2910962,2912286..2913668, 2914196..2914298,2914670..2914781,2915993..2916105)) /locus_tag="TCM_027312" /note="paralog of Thecc1EG027316t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25953.1" /db_xref="Phytozome:POPTR_0003s02320.1" /db_xref="TAIR:AT1G15780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MWL5" /translation="MDNNNWRPTPPSGEPTMDTGDWRTQLQADSRQRIVNKIMDTLKR HLPFSGQEGLNELRKIAVRFEEKIFTAASSQSDYLRRISLKMLTMETKSQNSIPNTGN NGKPPDPGSQAMQNQVHGQGQSIPIPLQSNQSQARQQLLPQNVPNNMASAGVQSSAGL QSGMPPVSGLTQNPIPNVVGQNSNMQNMSGITQNSLGQGMPSNIFANQQRQMQGRQQV HPQQQQQLYHHQLQHQLMRQKIQPGNLQPSLMQSHMQQQQQQNLLPPTQLQSSQQSGM QTSSVMQPTVMQSTPLPGLQQNQQSSLQQSTQSMLQQHQQSVLRQQQQPQQPASAGIH QQQTPMTQQSMMPQQHQQPPQPQQQQQPHVMGQQTNAANITQNQLIGQQNGIGDMQQQ RLLGQPNNLSNLQQQQQQQQLMAQQTNLSNIHQQQLGPQSNISGLQQQQQQQQLIGTQ PGNSSMQTNQQSLHMLSQPKVPLQQTQQSAPSLLPTQGQTSQQPPPQQQQQQLMSQMQ SQATQSQQQLSLQQQPNQLPRDMQQRLQASGQASSPLLQSQNHIDQQKQLYQSQRAVP ETSSTSLDSTAQTGHANGGDWQEEVYQKIKTMKETYLPELNEMYQKIAAKLQQHDSLP QQPKSDQLEKLKLFKTMLERIITFLSVSKANILPTFKDKLTSYEKQIINFINTNRPRK PASTLQQGQLPPPHMHSMQQPQPQINQTQSHDNQMNPQLQSINIQGSVPTMQTNNMTS LQHNSLSSLPGVSTAQQTMLNSLQPGSNLDSGQGNALGSMQQVAPGPLQQNPVSTSQQ ANISSLSSQSGISVLQQNMNPLQSNSNMLQHQHLNKPEQQMLQSQQLKQQYQQRQMQQ QQYIQKQQLMQQQQQQQQQQQQQLHQQAKQQLPTQLQTHQIPQLHQMNDVNDMKMRQG MGVKPGVFQQHLPAGQRQSYTHQQLKPGSQFPISSPQLLQAASPQMPQHSSPQVDQQS LLTSISKTGTPLQSANSPFVVPSPSTPLAPSPMLGESEKPVPGTSSLSNAANVGHQQG TGVQPGSQSLAIGTPGISASPLLAEFTGADGTHPTALTTVSSRSNITEQPLERLMKAV KSMSPTALGASVSDIGSVVSMTDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQ DGMNGTKRMRRYTSAMPLNVVSSAGSVNDSFKQLTGSETSDLESTATSSVKRPRIEAN HALLEEIREINLRLIDTVVDISDEDVDPSAAAATAEGGEGTIVKCSFSAVALSSNLKS QYMSAQMSPIQPLRLLVPTNYPNCSPILLDKFPVEVSKEYEDLSVKAKSRFSISLRTL SQPMSLGEIARTWDVCARAVISEHAQQSGGGSFSSKYGTWENCLSAA" mobile_element 2917789..2917980 /note="source:scaffold_5_CACTA_0610 5112 5331" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2917899..2918111) /note="source:scaffold_7_CACTA_0795 2864 2974" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2918006..2918143 /note="source:CACAO_PIF_E119_scaffold_3 4562 4711" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 2918327..2918545 /note="source:scaffold_7_CACTA_0795 2846 3109" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2919986..2920075 /note="source:scaffold_3_CACTA_0396 891 981" /mobile_element_type="transposon:TIR/CACTA" gene complement(2920583..2921577) /locus_tag="TCM_027313" /note="dbxref CacaoGD:Thecc1EG027313" mRNA complement(2920583..2921577) /locus_tag="TCM_027313" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041336t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(2920633..2921262) /locus_tag="TCM_027313" /note="paralog of Thecc1EG041336t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25954.1" /translation="MLLQYLDTKSMEEVCYVMWVLWKGRNSTVFKNERLNLRQVVQMG IDMYTQYRAVVVIERPPQLNVELSCDRWKCPSITKLNCDAALYGINGISCATVGFIVR GPVGELLIVGRKRFRSIRNTAITELRSLLWALMVWSQKLVIHEMEMDCLQVAAWIKDR KFTSEVGQVVEACCMLLHQLNSFEILHRKKEANMVAHGIAKSSMVAEMD" mobile_element complement(2922880..2922933) /note="source:CACAO_LINE_E_188_scaffold_7 1670 1723" /mobile_element_type="retrotransposon:LINE/L1" gene complement(2925025..2928832) /locus_tag="TCM_027314" /note="dbxref CacaoGD:Thecc1EG027314" mRNA complement(join(2925025..2926101,2926962..2927039, 2927988..2928090,2928311..2928422,2928771..2928832)) /locus_tag="TCM_027314" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027321t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete" CDS complement(join(2925305..2926101,2926962..2927039, 2927988..2928042)) /locus_tag="TCM_027314" /note="paralog of Thecc1EG027321t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25955.1" /translation="MSQNIANTFGKCSNLPNPASLDVAKQKRHAIGDDLQEEVYQKVN NSELLHKLEISKVTFDHIVDFLTVSKSDILSSHKEKLDSYERQIIKFYEVIRPRKSIS ESDDNQINLQSKSMMPQGCEPIIPQIKQQGQPLQQQMQEQHDQQQQYMHHLAKKQPPA QIKTHELPQPHPMNDSNDVNMRQGIGVNPGVNLQQILPTSQLPSYSHEPLKSDPQFLI SSPQAPYVSSPSTLLTPSPEPGNSGKPIYGNSSLSNNCINISQQEATIEQTGSEFSTL DSPGNDMLAFPLLAGLTNANDTHGNALTTGFTI" gene complement(2931222..2933452) /locus_tag="TCM_027315" /note="dbxref CacaoGD:Thecc1EG027315" mRNA complement(join(2931222..2931572,2932063..2932174, 2932977..2933452)) /locus_tag="TCM_027315" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027312t1" /inference="similar to AA sequence:frave:gene01517" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc268t5; alternateUTRof:Thecc1EG027315t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15618t1" mRNA complement(join(2931263..2931572,2932063..2932174, 2932977..2933115,2933399..2933451)) /locus_tag="TCM_027315" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027312t1" /inference="similar to AA sequence:frave:gene01517" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15618t1" CDS complement(join(2931471..2931572,2932063..2932174, 2932977..2933098)) /locus_tag="TCM_027315" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene01517; paralog of Thecc1EG027312t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25956.1" /db_xref="TAIR:AT1G15780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B7FN97" /translation="MDTNNSEATTSGEATTVTGDPRELWQLQLQPESRQRIVNKIMDT LKRHLPCHGQEGLNEIRMIAARFEEKVYAGATSQSDYLRRISLKMLTLESQSRTVCVA AKRKRVMAP" CDS complement(join(2931471..2931572,2932063..2932174, 2932977..2933098)) /locus_tag="TCM_027315" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene01517; paralog of Thecc1EG027312t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY25957.1" /db_xref="TAIR:AT1G15780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B7FN97" /translation="MDTNNSEATTSGEATTVTGDPRELWQLQLQPESRQRIVNKIMDT LKRHLPCHGQEGLNEIRMIAARFEEKVYAGATSQSDYLRRISLKMLTLESQSRTVCVA AKRKRVMAP" mobile_element 2933622..2933722 /note="source:scaffold_5_CACTA_0610 5115 5219" /mobile_element_type="transposon:TIR/CACTA" gene complement(2934817..2945509) /locus_tag="TCM_027316" /note="dbxref CacaoGD:Thecc1EG027316" mRNA complement(join(2934817..2936527,2937330..2937404, 2937940..2938010,2939334..2940644,2941169..2941271, 2941662..2941773,2942976..2943094,2944233..2944349, 2944579..2944630,2945298..2945509)) /locus_tag="TCM_027316" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0027s00430.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027312t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s02320.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1304t1" CDS complement(join(2935214..2936527,2937330..2937404, 2937940..2938010,2939334..2940644,2941169..2941271, 2941662..2941773,2942976..2943088)) /locus_tag="TCM_027316" /note="paralog of Thecc1EG027312t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25958.1" /db_xref="Phytozome:POPTR_0003s02320.1" /db_xref="TAIR:AT1G15780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MWL5" /translation="MDNSNWRPTPPSGEPTMDTGDWRTQLQADSRQRIVNKITDTLKR HLPFSGQEGLNELRKIAVRFEEKIFTAASSQSDYLRRISLKMLTMETKCQNTIPNTGT NSKPPDPGSQAMQNQVHSQGQSIPIPLQSNQSQTRQQLLPQNVPNNMTSAGVQSSAGL QYGMPPVSGLTQNPIPNVVGQNSNMQNMSGTMQNSLGQGMPSNIFANQQRQMQGRQQV HPQQQQQQQQQLYHQQLQHQLMTQQGNLQLSLMQSHMQQQQQQNLLPPTQLQSGMQTS STMQPSAMQSTPLPGLQQNQQSSLQQSTQSMLQQHQQSVLRQQQQPQQAASAGIHQQQ TPMTQQSMMPQQHQQPPQPQPQQHQQPHVMGQQTNDANIQQTQLIGQQNSIGDMQQQR LLGHPNNLSNLQQQQQQQQLMAQQNNLSNIHQQQLIGTKSGNSSMQTNQQSLHMLSQA KVPLQQTQQSAPSLLPTQGQTSQQPPLQQHRQLMLQMQSQSTQLQQQLGLQQQPNQFQ RDMQQRLQASSPLLQSQNLIDQLKQLYQLQRAVPETSSTSLDFTAQTGHANGGDWQEE VYQKIKTMKETYLPELNEMYQKIAAKLQQHDSLPQQPKSDQLEQLKLFKTMLERIITF LTVSKANILPTFKDKLTSYEKQIINFINTNRPRKPASTLQQGQLPPPHMHSMQQPQPQ INQTQSHDNQMNPQLESINIQGSVPTMQTNNTTSLQHNSLSSLPGVSTAQQTMLNSLQ PGSNLDSGQGNALGSMQQVAPGPLQQNPVSTYQQANISSLSSQSGISVLQQNMNPLQS NSSMLQHQHLKQQELQMLQSQQLKQQYQQRQMQQQPYIQKLQLLQQQQAKQQLPTQLQ THQMPQLHQMNDVNDMKMRQGMGFKPGVFQQHLPAGQRQSYTHEQLKQGSQFPFSSPH LLQAASPQMPQHSSPQVDQQSLLTSISKTGTPFQSANSPFVVPSPSTPLAPSPMLGES EKAVPATSSLSNAANVGHQQETGVQPGSQALVLKLKHALTLTFCFTVYFALLYWLLRV LY" mobile_element 2945189..2945479 /note="source:scaffold_2_CACTA_0244 13947 14697" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2945480..2946066 /note="source:CACAO_M_E4753_F17_scaffold_2 7215 7818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2945546..2946072 /note="source:INTACT135F_F90_scaffold_2-int 13513 14002" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2946081..2946157) /note="source:INTACT518_F239_scaffold_2-int 8042 8114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2946351..2946453) /note="source:scaffold_1_CACTA_0032 2360 2464" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2951061..2955295 /note="source:CACAO_PIF_E119_scaffold_3 6785 11115" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 2955287..2956581 /note="source:CACAO_PIF_E119_scaffold_3 11904 13216" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(2956578..2958289) /note="source:CACAO_PIF_E62_scaffold_2 11754 13406" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 2958287..2958588 /note="source:CACAO_PIF_E119_scaffold_3 7816 8118" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(2958594..2958771) /note="source:CACAO_Mutator_E1018_scaffold_5 467 644" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2958787..2958899 /note="source:CACAO_Mutator_E1018_scaffold_5 503 615" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2958957..2959297) /note="source:CACAO_PIF_E62_scaffold_2 16126 16467" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(2959115..2959338) /note="source:CACAO_Mutator_E1320_scaffold_6 2002 2244" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2959293..2959360) /note="source:CACAO_PIF_E62_scaffold_2 13875 13942" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(2959360..2961207) /note="source:CACAO_Mutator_E592_scaffold_3 7695 9599" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2959579..2964818) /note="source:CACAO_PIF_E62_scaffold_2 7096 12308" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(2966867..2968849) /locus_tag="TCM_027321" /note="dbxref CacaoGD:Thecc1EG027321" mRNA complement(join(2966867..2967107,2967257..2968072, 2968840..2968849)) /locus_tag="TCM_027321" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027314t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(2967096..2967107,2967257..2967667)) /locus_tag="TCM_027321" /note="paralog of Thecc1EG027314t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25959.1" /translation="MNDTNDVNMRQGISVNLGVDLQQILPTGQLPGYSHELLKPDPQF LISSPQAPYVPSPSTLLTPSPELGNSGKPIYGDSSLSNNCINISQQEATIEQVGSEFS TLDSLSNGMLAFPLLAGFTNANDTHGNALTTGFTMLLE" mobile_element 2969948..2979642 /note="source:CACAO_M_E44351_F22_scaffold_6 1 9695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2979582..2979660) /note="source:CACAO_M_E5899_F5_scaffold_2 24450 24525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2981235..2990158 /note="source:INTACT83_F5_scaffold_9-int 1 8907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2991297..2991385) /note="source:CACAO_M_S_E99574_F14_scaffold_9 11060 11147" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2992219..2992395) /note="source:scaffold_6_CACTA_0702 1 176" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2993088..2993732 /note="source:scaffold_9_CACTA_0931 1 648" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2996196..2996337) /note="source:INTACT639F_F363_scaffold_5-int 8467 8589" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2997267..2998276) /note="source:scaffold_6_CACTA_0702 13522 14523" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2998277..2998734) /note="source:CACAO_M_S_E99519_F9_scaffold_9 4 1407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3000485..3001643 /note="source:CACAO_M_S_E66819_F14_scaffold_6 1 1159" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3003218..3003310) /note="source:CACAO_Mutator_E592_scaffold_3 18012 18089" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3003311..3003321) /note="source:CACAO_PIF_E119_scaffold_3 13674 13794" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(3004683..3009602) /locus_tag="TCM_027324" /note="dbxref CacaoGD:Thecc1EG027324" mRNA complement(join(3004683..3005164,3005303..3005637, 3009521..3009602)) /locus_tag="TCM_027324" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017348t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(3004875..3005164,3005303..3005519)) /locus_tag="TCM_027324" /note="paralog of Thecc1EG017348t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25960.1" /translation="MKLVENVVGVNSQNHEIELHALPSHVARVSWPVIRDNEDLASIL QDERGVVMFVTIKEQHTNAMPHEQTVQHKCVSNEILRSCQQMQPSFKTAVGLSLFSNN ITMIISDDDAYDQMHDDYVEDDTTEWNDENYVGENDDCSEEDRGDDNDIRIVIMQLAI QNMPQLLS" mobile_element 3006973..3008631 /note="source:CACAO_M_E84368_F4_scaffold_10 11581 13220" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(3010432..3011109) /locus_tag="TCM_027325" /note="dbxref CacaoGD:Thecc1EG027325" mRNA complement(3010432..3011109) /locus_tag="TCM_027325" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038231t1" /inference="similar to AA sequence:ricco:30090.m000244" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.83 coverage" CDS complement(3010697..3011029) /locus_tag="TCM_027325" /note="dbxref ricco:30090.m000244; paralog of Thecc1EG038231t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25961.1" /translation="MATKRSASPSSARTCLCSPTTHPGSFRCSFHRSFGKASTKSAAA PHANRVESKAATMMMMTTASKACLIKAFLMQIIKPSSHDLQRRRNFQRKPTRFCPLNS SANGVAVS" mobile_element 3011903..3011946 /note="source:INTACT289_F14_scaffold_4-int 1365 1408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3012715..3013668) /note="source:CACAO_on_E683_scaffold_9 1323 2300" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3013475..3014221 /note="source:INTACT639F_F363_scaffold_5-int 8110 8573" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3015019..3016104 /note="source:MITE_hAT_16 1 1086" /mobile_element_type="transposon:TIR/MITE" mobile_element 3020412..3020622 /note="source:scaffold_6_CACTA_0702 18147 18354" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3021502..3022056 /note="source:scaffold_6_CACTA_0702 14845 15399" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3022055..3025230 /note="source:scaffold_6_CACTA_0702 15195 18354" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3026049..3026565 /note="source:CACAO_Mariner_E265_scaffold_10 128 642" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(3026736..3031499) /locus_tag="TCM_027327" /note="dbxref CacaoGD:Thecc1EG027327" mRNA complement(join(3026736..3027068,3027281..3027605, 3028698..3028769,3028843..3028879,3028974..3029032, 3029153..3029437,3029563..3029744,3030735..3030925, 3031079..3031499)) /locus_tag="TCM_027327" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb0284s002010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036954t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012867001" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(3026991..3027068,3027281..3027605, 3028698..3028769,3028843..3028879,3028974..3029032, 3029153..3029437,3029563..3029744,3030735..3030925, 3031079..3031199)) /locus_tag="TCM_027327" /note="paralog of Thecc1EG036954t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25962.1" /db_xref="Phytozome:GSVIVT01012867001" /db_xref="TAIR:AT2G12400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T4Z4" /translation="MLCTKSRPSLLLPTFFLVFSTFFAVSRASLSYHVPNKPNPGVMG ESKYGVVSDGMRRSVVGVYVKAMKNSTLVLAAERTHRKDPLDNFNYYKGGWNISEKHY FSSVGFTAAPLFLIAAFWFLGFGMCLLVITLCHCCCRRQHYDYSQTIYLLSLIFLTLF TIAAVIGCIVLYVGQGKFHTSTTVTLEYVVEQADTTVDKLKNVSEYLEAAKQIQVNQI FLPPNIQGNIERVDKKINDSAKILERKSKENSEKIRHVLDYVSLALIIIASVMLLMAF LGFSFSVSGMRFCVYILVIIGWILVTVIFILCGIFIIVHNVMDDSCVAMEQWVLYPTA HTALDDIIPCVDRATAKEALDESKDVSTRLVGTVNALINNVANLNVPPNPSPIYYNQS GPLVPALCSPYNSDKTDRKCNADEVNLGNAAQRNQKVDYWKVNAKSGVRSHSICEMN" gene complement(3031537..3035042) /locus_tag="TCM_027328" /note="dbxref CacaoGD:Thecc1EG027328" mRNA complement(join(3031537..3032522,3032616..3032934, 3033049..3033120,3033213..3033249,3033359..3033417, 3033523..3033807,3033922..3034106,3034585..3034739, 3034817..3035042)) /locus_tag="TCM_027328" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012867001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038232t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012867001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1113t1" CDS complement(join(3032142..3032522,3032616..3032934, 3033049..3033120,3033213..3033249,3033359..3033417, 3033523..3033807,3033922..3034106,3034585..3034739, 3034817..3035006)) /locus_tag="TCM_027328" /note="paralog of Thecc1EG038232t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25963.1" /db_xref="Phytozome:GSVIVT01012867001" /db_xref="TAIR:AT2G12400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T4Z4" /translation="MHKPFVSPREKNREIQRRRIMKMPVRLKPFFLIIALFLISSTFF PLSHGQDEKDDQPSDGNSQGAMSLVKERLDEAGSGNASFILAKKETYRKDPLDNFNYY TGGWNIASVHYLASVAFSSAPFAIIAIVWFVLFGLFLFCACICCCCCRRNKPYGYSRL AYALSLIFLVLFTIAAIVGCVIMYIGEGRFQGSVNGATKYIVNQGISVVNNLINVYNY LSSAKNIALNQQFLPPDLVSQIDNVNSLINATGNLPHVTSTHITDSILVFLNPVNMAL IIITVFLLLLAFLGFLFSILGMQACVYLFVVIGWIIITLTFILCGIFLVFHNIVADTC VAMDEWVQNPMADSAMKELLPCWDRGFGQNVLNASRSVTTSVDSLLNEYIVLVANNDT LPPETVPLYHNQSGPLVPVLCNPYTTQQGCGEGEVALSDAAEEWKKYVCEVSAAGICT TIGRLTPDMYNQMTSAVNVSYGLHNYGHFLAGIVDCTVLRDTFNGISQNHCPGLRKYS EWVYMGLVTATGSVMLSLILWVLYARERRHRKYTKRINKGYDESPLVGGRKL" gene complement(3036330..3038120) /locus_tag="TCM_027329" /note="dbxref CacaoGD:Thecc1EG027329" mRNA complement(join(3036330..3037688,3037886..3037938, 3038049..3038120)) /locus_tag="TCM_027329" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022646t1" /note="quality class is medium-utrpoor, express is strong, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.83 coverage" CDS complement(join(3037290..3037688,3037886..3037938, 3038049..3038070)) /locus_tag="TCM_027329" /note="paralog of Thecc1EG022646t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25964.1" /translation="MAGRSNNGTLTAFMMVSNQLGEIFECRDWGLDWVFPCSALEFFS AWNDLLLDGDHLKLWKMSFYSILWSIWLFWNDMIFSGKIWDPFQLYDINKTRVAWWAK SKWSNLKIPLLDLFREPWLGSIEDSCKSFIKSVEWRRPNPNQVKFNVNEAASGCL" mobile_element 3038362..3044431 /note="source:INTACT525_F2_scaffold_2-int 1 6099" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3054312..3056777) /locus_tag="TCM_027333" /note="dbxref CacaoGD:Thecc1EG027333" mRNA complement(3054312..3056777) /locus_tag="TCM_027333" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene15960" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027342t1" /inference="similar to AA sequence:Phytozome:POPTR_0009s08870.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS complement(3054839..3056521) /locus_tag="TCM_027333" /note="paralog of Thecc1EG027342t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25965.1" /db_xref="Phytozome:POPTR_0009s08870.1" /db_xref="TAIR:AT3G02645.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HN24" /translation="MSSVQNTMSSSSNANFDERRWVINIRRTLEAELEDDNEIPVSIF NVPKTLLSSDPDSYTPQLVAIGPYHYWRPELYEMERYKIDAAKRTQKNLLNNLQFDDL VEQLTWLEPKIRACYHKLLDFSNETLAWMMAIDASFLLEFLQIYAMKEGKLLTRVSSR MAHLVDYAGRKSAHNAILRDIMMLENQIPLFVLRKMLEVQSASLEPADDLLLSMLTGV CKELSPFKMMKVLPKIRVSETSHLLDCLYDMIVPKLQPRTTSEISEIEDQNEDMKGKE GSSEDPGYVQQLLSEVWKLLSKLNKGPIHLIKKLLVSKPIKVIFKLPWIIISKLPGFS ILKQPVEYFFFNEENKEDDKSEGEGSGADKPPLVEEITIPSVSELSNSGVRFLPTTGN LLTITFDVKTVTFYLPTVSLDVNTEVIMRNLVAYEASNASGPLVFTRYTELMNGIIDT EEDVKLLREKGIILNRLKRDQEAADLWNGMSKSIRLTKVPFLDKAIEEVNKYHNGRWN IKAKNMMKSYVFGSWQFLTFMAAILLLLLMALQAFCSVYSCSRVFHIKTSTG" mobile_element 3059561..3061676 /note="source:CACAO_M_E69946_F329_scaffold_9 1 2148" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3061654..3061725 /note="source:CACAO_M_E72142_F322_scaffold_10 723 796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3061912..3063721 /note="source:CACAO_M_E69946_F329_scaffold_9 2158 4000" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3063821..3063875) /note="source:INTACT787_F334_scaffold_10-int 568 623" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(3063841..3066413) /note="source:INTACT160_F4_scaffold_7-int 12090 14716" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3066403..3070760) /note="source:INTACT160_F4_scaffold_7-int 6833 11170" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(3066998..3072339) /locus_tag="TCM_027334" /note="dbxref CacaoGD:Thecc1EG027334" mRNA complement(join(3066998..3068101,3068194..3068405, 3068656..3068951,3069039..3069366,3069480..3069694, 3071771..3072339)) /locus_tag="TCM_027334" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040186.8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027849t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400060088" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage" CDS complement(join(3067632..3068101,3068194..3068405, 3068656..3068951,3069039..3069366,3069480..3069580)) /locus_tag="TCM_027334" /note="paralog of Thecc1EG027849t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25966.1" /db_xref="Phytozome:PGSC0003DMP400060088" /translation="MDLEVESSGLKVVKVPVRRESVPVLGIREVIILSFKDSDYQPYE EIDRGNVMVTLGDFMKLKPPSFSGAKSTEDPQVFLDEIDKICTALGCFSRGAVELTGF RLTKAMQIWFATLKCCRPSGSTPLIWEEFTQAFMDRFLLESLSRYAPYLVQTERERIK KFIKGLHWPIYRILVSQIFTSYPKVVDVARKIKAKRKEVGVERERSKRNRGEGSSKYK DPSRGKDANIVGQLGRRDGNLLRGHNQEMTHDLIRPNFATAPTKNVKRDKGKRVTSLS QGRSVGLTQQGAFGGGQAKVFTLTPQNAHVLNAVVTGKHYEYMDEPLVVTTPLEESYV TKYVFRSCVVQIKDRDTWVDLVLMITLGFDVILGIDWLVSCYANVDCYCKLVKFKFPG EPLFVIYGHSNHLVNCLMATITREVHNEEGNLEATPVVNEFVDVFPEELLGLPLEREI EFRIDLILETQPISMPPY" mobile_element 3070002..3071135 /note="source:CACAO_M_E43348_F5_scaffold_5 3857 4991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3070759..3072048) /note="source:INTACT160_F4_scaffold_7-int 12781 14102" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3071176..3072051 /note="source:CACAO_M_E43348_F5_scaffold_5 4976 5870" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3073411..3100633) /locus_tag="TCM_027335" /note="dbxref CacaoGD:Thecc1EG027335" mRNA complement(join(3073411..3073439,3081691..3083561, 3085254..3085322,3100245..3100633)) /locus_tag="TCM_027335" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s36110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027342t1" /inference="similar to AA sequence:Phytozome:POPTR_0009s08870.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" mobile_element 3074761..3078064 /note="source:CACAO_M_E44354_F207_scaffold_6 1 3304" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(3081738..3083561,3085254..3085274)) /locus_tag="TCM_027335" /note="paralog of Thecc1EG027342t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25967.1" /db_xref="Phytozome:POPTR_0009s08870.1" /db_xref="TAIR:AT3G02645.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HN24" /translation="MTILPKIVHSHNPSCTKTAKSSPKSGQEHHHHHHQRQQEHPKPK RKESNNIKIDMSSLQTTMTSNFSSNCDEFRWVINIRRFLDEELEDDIEIPVSIFNVPK ALMSSSPDCYTPQQVGISPYHYWRPDLYEMERYKLAAAKRTQKQLQCPTFEDLVEQLE QVDPRIRACYHKYLDLDSETLAWMMAISTSFLLEFLQIYVFHEGKTLSSEVCSRMSHL VDHAGAKSAHNSILRDIMMLENQIPLFVLRKVLEVQFSSLEAADDLSLLMLRGLCREL SPFKMMKNLPKIDISKCPHVLDFLYNMIVPKLEEQSEPIQQPEDQNKETTKDKQSNPV LDSSYAKWLLSEIWKMFSTMNCAPTRLIKAALKSGPVRLILNLPWKILSNLPGFSILR KPIEYLCFIKEKEEQVISSASNFSIHKPPLIEEIAIPSVADLSKAGVRILPTNGNIST ISFDVTTVTLYLPIVCLDINTEVVLRNLVAYEASNASGPLVFTRYTELMNGIIDTEED VKLLRERGIILNHLKSDKEAADMWNGMSKSIRLTKVPFLDKVIEDVNKYHNGRWNVKA TDFFKQYVYGSWQFLTLLAAIMLLFLMTFQAFCSVYSCSQIFRIQTSD" mobile_element complement(3088701..3088825) /note="source:CACAO_Again_on_S_E25_scaffold_1 3603 3720" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(3090258..3090538) /note="source:CACAO_Again_on_S_E25_scaffold_1 3309 3600" /mobile_element_type="transposon:TIR/hAT" mobile_element 3094897..3095238 /note="source:CACAO_Again_on_S_E25_scaffold_1 1 352" /mobile_element_type="transposon:TIR/hAT" mobile_element 3095226..3095726 /note="source:CACAO_Again_on_S_E25_scaffold_1 3310 3786" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(3099211..3099824) /note="source:INTACT453_F4_scaffold_9-int 1 613" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3100581..3103859) /note="source:CACAO_M_E27112_F245_scaffold_4 1 3293" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3103860..3105451) /note="source:INTACT254_F60_scaffold_3-int 6770 8363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3105452..3110843) /note="source:INTACT472_F79_scaffold_7-int 1997 7323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3114003..3114690 /note="source:CACAO_M_E22484_F328_scaffold_3 7902 8592" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3114681..3115843 /note="source:CACAO_M_E57391_F87_scaffold_9 1625 2810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3115844..3116473) /note="source:INTACT254_F60_scaffold_3-int 6145 6774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3116574..3123199) /note="source:CACAO_M_S_E15657_F60_scaffold_2 3 6639" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3126022..3134515) /locus_tag="TCM_027342" /note="dbxref CacaoGD:Thecc1EG027342" mRNA complement(join(3126022..3128020,3131816..3132016, 3132081..3132221,3134106..3134515)) /locus_tag="TCM_027342" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s08870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027335t1" /inference="similar to AA sequence:Phytozome:POPTR_0009s08870.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(3126212..3127882) /locus_tag="TCM_027342" /note="paralog of Thecc1EG027335t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25968.1" /db_xref="Phytozome:POPTR_0009s08870.1" /db_xref="TAIR:AT3G02645.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HN24" /translation="MSALQATTSSTSKSNFDERRWVINIRRSLDEEVEGDIDVPVCIF NVPKTLMSSNPESYIPQLVALGPYHYWRPELYEMERYKLAAAKRTQKQLQSPNFHTLV DQLAKHEPRIRACYHSYLDFNGETLAWMMAIDASFLLEFLQIYALKEGKTLSRVSSRM SHLVDYTGRKSAHNAILRDIVMLENQIPLFILRKVLEVQYSSMETADDMLLSMLRGLC QELSPFKMMENMPKIDISRCAHVLDFLYDMIVPKVDEPSITNEAEDQKEAPEDKQSDI DSTDPSYLKQLLSEVWNLLSKIKRGPLRLIKAVLLSRPVRVILKLPWKILSNLPGFSI LKQPIEYLLFSQDKEEEKSETSSGLNKPPLVEEIAIPSVADLSKSGVRFSPTNGSISN ISFDVKTVTLYLPTISLDINTEVVLRNLVAYEASNASGPLIFTRYTELMNGIIDTEED VKLLRESGVVLNHLKSDEEAADLWNGMSKSIRLTKVPFLDKAIEDVNRYHNCRWNIKA RNFFKHYVYGSWQFLTLLAAIMLLILMTFQAFCTVYSCFRILGTQTSD" gene complement(3131323..3134451) /locus_tag="TCM_027343" /note="dbxref CacaoGD:Thecc1EG027343" mRNA complement(join(3131323..3131715,3132081..3132781, 3133067..3134451)) /locus_tag="TCM_027343" /product="Pentatricopeptide repeat superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:27446.m000483" /inference="similar to AA sequence:Phytozome:POPTR_0005s19090.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1126t3" mRNA complement(join(3131409..3131617,3131818..3131939, 3132081..3132221,3132501..3134075)) /locus_tag="TCM_027343" /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:27446.m000483" /inference="similar to AA sequence:Phytozome:POPTR_0005s19090.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1126t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1126t3" mRNA complement(join(3132193..3132221,3132501..3134267)) /locus_tag="TCM_027343" /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:27446.m000483" /inference="similar to AA sequence:Phytozome:POPTR_0005s19090.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1442t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1126t3" CDS complement(join(3132670..3132781,3133067..3134400)) /locus_tag="TCM_027343" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein isoform 1" /protein_id="EOY25969.1" /db_xref="Phytozome:POPTR_0005s19090.1" /db_xref="TAIR:AT1G80550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8M3" /translation="MLSSISSKRLTPFSLLSPIRLLFSSTSRSLFLNPTSHFHSQPPN PLPDQPNFDHQTVRETLSCYSNDWKRALEFFNWVETQCQFPHTTETFNKMLDILGKSF EFDLSWDLIDRMKNKPCSIPDHATFRILFKRYITAHLVKEAISTFDRLEEFNLKDEIS FCNLVDALCEYKHVIEAQELCFFGKIKEIGLSVNDTKIHNMILRGWFKMGWWSKCREF WQEMDKKGVKKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIRAI GISEGADFGVGVFREMRDLGCEPNVVTYNTVIKLLCENGRVRQAYAVLDQMLKKDCAP DVITYHCFFGCLEKPREILKLFDLMITNGIQPRMDTYVMLMRKFGRWGFLRPVFMVWK KMEELGSSPNEFAYNALIDALIQKGMLDMARKYDEEMLEKGLSSKPREELGTKQRIAE CLGEVNLMVPAFFHLSSENSRNEAGTRNAYG" CDS complement(3133039..3134121) /locus_tag="TCM_027343" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 3" /protein_id="EOY25971.1" /db_xref="Phytozome:POPTR_0005s19090.1" /db_xref="TAIR:AT1G80550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8M3" /translation="MLDILGKSFEFDLSWDLIDRMKNKPCSIPDHATFRILFKRYITA HLVKEAISTFDRLEEFNLKDEISFCNLVDALCEYKHVIEAQELCFFGKIKEIGLSVND TKIHNMILRGWFKMGWWSKCREFWQEMDKKGVKKDLHSYSIYMDIMCKSGKPWKAVKL YKEMKKKGMKLDVVAYNTVIRAIGISEGADFGVGVFREMRDLGCEPNVVTYNTVIKLL CENGRVRQAYAVLDQMLKKDCAPDVITYHCFFGCLEKPREILKLFDLMITNGIQPRMD TYVMLMRKFGRWGFLRPVFMVWKKMEELGSSPNEFAYNALIDALIQKGMLDMARKYDE EMLEKGLSSKPREELGTKLVQGGEDT" CDS complement(3133039..3134061) /locus_tag="TCM_027343" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 2" /protein_id="EOY25970.1" /db_xref="Phytozome:POPTR_0005s19090.1" /db_xref="TAIR:AT1G80550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8M3" /translation="MKNKPCSIPDHATFRILFKRYITAHLVKEAISTFDRLEEFNLKD EISFCNLVDALCEYKHVIEAQELCFFGKIKEIGLSVNDTKIHNMILRGWFKMGWWSKC REFWQEMDKKGVKKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVI RAIGISEGADFGVGVFREMRDLGCEPNVVTYNTVIKLLCENGRVRQAYAVLDQMLKKD CAPDVITYHCFFGCLEKPREILKLFDLMITNGIQPRMDTYVMLMRKFGRWGFLRPVFM VWKKMEELGSSPNEFAYNALIDALIQKGMLDMARKYDEEMLEKGLSSKPREELGTKLV QGGEDT" gene 3134889..3141206 /locus_tag="TCM_027344" /note="dbxref CacaoGD:Thecc1EG027344" mRNA join(3134889..3135320,3136155..3136284,3136395..3136506, 3137825..3137900,3138002..3138090,3138844..3138930, 3139552..3139668,3139789..3139896,3139987..3140040, 3140153..3140305,3140755..3141206) /locus_tag="TCM_027344" /product="Isopropylmalate dehydrogenase 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:27446.m000482" /inference="similar to AA sequence:Phytozome:POPTR_0001s18630.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07186t00001" mRNA join(3134889..3135320,3136155..3136284,3136395..3136506, 3137825..3137900,3138002..3138090,3138874..3138930, 3139552..3139668,3139789..3139896,3139987..3140040, 3140153..3140305,3140755..3141206) /locus_tag="TCM_027344" /product="Isopropylmalate dehydrogenase 2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:27446.m000482" /inference="similar to AA sequence:Phytozome:POPTR_0001s18630.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:PASA:2:TSA:puevd3b026452t1a2; inference alignment:Newbler:10:TSA:cgbaB_g07186t00001" CDS join(3135101..3135320,3136155..3136284,3136395..3136506, 3137825..3137900,3138002..3138090,3138844..3138930, 3139552..3139668,3139789..3139896,3139987..3140040, 3140153..3140305,3140755..3140829) /locus_tag="TCM_027344" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Isopropylmalate dehydrogenase 2 isoform 1" /protein_id="EOY25972.1" /db_xref="Phytozome:POPTR_0001s18630.1" /db_xref="TAIR:AT1G80560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P93832" /translation="MAASIQLNVRSIKAPFNLTPVPKQCPKPSRISCAAAAATPTKRY SITLLPGDGIGPEIIFVTKNVLKLAGSLEGIEFSFQEMPMGGAALDLTGVPLPEETLS AAKKADAILLGAIGGYKWDKNEKHLKPETGLLQLREGLKVFANLRPATVLPQLVDSST LKKDVAEGVDLMVVRELTGGIYFGKPRGFGINEKGEDIGFNTEVYATHEIDRIARVAF EIARKRRGQLCSVDKANVLEASMLWRKRVTAIASEYPDVELSHMYVDNAAMQLVRYPK QFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKA NPLATILSAAMLLKYGLGEENAAKRIENAVLDTLNRGFRTGDIYSAGNKLVGCKEMGE EVLKSVDSPVLAAI" CDS join(3135101..3135320,3136155..3136284,3136395..3136506, 3137825..3137900,3138002..3138090,3138874..3138930, 3139552..3139668,3139789..3139896,3139987..3140040, 3140153..3140305,3140755..3140829) /locus_tag="TCM_027344" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Isopropylmalate dehydrogenase 2 isoform 2" /protein_id="EOY25973.1" /db_xref="Phytozome:POPTR_0001s18630.1" /db_xref="TAIR:AT1G80560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P93832" /translation="MAASIQLNVRSIKAPFNLTPVPKQCPKPSRISCAAAAATPTKRY SITLLPGDGIGPEIIFVTKNVLKLAGSLEGIEFSFQEMPMGGAALDLTGVPLPEETLS AAKKADAILLGAIGGYKWDKNEKHLKPETGLLQLREGLKVFANLRPATVLPQLVDSST LKKDVAEGVDLMVVRELTGGIYFGKPRGFGINEKGEDIGFNTEVYATHEIARKRRGQL CSVDKANVLEASMLWRKRVTAIASEYPDVELSHMYVDNAAMQLVRYPKQFDTIVTNNI FGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAA MLLKYGLGEENAAKRIENAVLDTLNRGFRTGDIYSAGNKLVGCKEMGEEVLKSVDSPV LAAI" gene 3141419..3147322 /locus_tag="TCM_027345" /note="dbxref CacaoGD:Thecc1EG027345" mRNA join(3141419..3141649,3141777..3141892,3142118..3142226, 3142345..3142468,3143251..3143348,3143506..3143612, 3143722..3143965,3144053..3144106,3144187..3144330, 3144460..3144524,3145572..3145626,3145735..3145939, 3146032..3146573,3147093..3147322) /locus_tag="TCM_027345" /product="Zinc finger (C3HC4-type RING finger) family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s08600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038122t1" /inference="similar to AA sequence:ricco:27446.m000481" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1238t3" CDS join(3141461..3141649,3141777..3141892,3142118..3142226, 3142345..3142468,3143251..3143348,3143506..3143612, 3143722..3143965,3144053..3144106,3144187..3144330, 3144460..3144524,3145572..3145626,3145735..3145887) /locus_tag="TCM_027345" /note="dbxref ricco:27446.m000481; paralog of Thecc1EG038122t1" /codon_start=1 /product="Zinc finger (C3HC4-type RING finger) family protein" /protein_id="EOY25974.1" /db_xref="TAIR:AT2G26000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O80996" /translation="MSSSSSTVTGDDKFRQSETVIAGDLSAPNMSTEAISFSSGNPRI EETRGVMHLFSNDAVSTLPVERKPLVCVLGVPNHMTYADFCQFCASFIHHILEMRIVR NDGMEDRYSVLIRFDSQDSTDKFYQHFNNRQFNSLEEEVCRVLFTVDVQFTGYSGSLD HVQSPPASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQ QQPETSTCFICQTSENLWICVLCGFVGCGRYKRGHAIIHWKETQHCYSLELETQRVWD YVGDNYVHRLIQSKTDGKLVELNSHCLHANDGCGSCDCADSGISEAILSCKAEIVNEY NELLRTQLENQKLYYETLLQQVNEETEREIADAVNKAVMQKRQKMQAKLERCVKEKKF LEDLNENLLKNQEIWKAKLLEVEEREKKALRMKNDKIQALDEQLRDLMAHLEAGKAVE QLSISDEINDTTVLPKALESCSRKEEKDSKNETSS" gene 3147359..3150533 /locus_tag="TCM_027346" /note="dbxref CacaoGD:Thecc1EG027346" mRNA join(3147359..3148147,3148672..3149106,3149843..3150533) /locus_tag="TCM_027346" /product="Acetylornithine aminotransferase, mitochondrial" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s08060.1" /inference="similar to AA sequence:Phytozome:POPTR_0017s08060.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05795t00001" CDS join(3147758..3148147,3148672..3149106,3149843..3150373) /locus_tag="TCM_027346" /codon_start=1 /product="Acetylornithine aminotransferase, mitochondrial" /protein_id="EOY25975.1" /db_xref="Phytozome:POPTR_0017s08060.1" /db_xref="TAIR:AT1G80600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04866" /translation="MGSLQLFHSFSVSVSPATNLRRPLNNGRVSACLNVDVEAPNPLK MKSGGSKEVIEEEGKVLVGTYARAPVVLSLGKGCKLYDPEGREFLDCAAGIAVNALGH GDPDWVRAVTEQANVLTHVSNAYYSIPQVELAKRLVANSFADRVFFSNSGTEANEAAI KFSRKFQRFTHPNDKQPATGFISFTNSFHGRTLGALALTSKEHYRSPFEPVMPGVTFL EYGNKQTAKDLIQQGKIAAVFVEPIQGEGGIYSAKKEFLQALRKACDDAGCLLVFDEV QCGLGRTGYLWAHEVYGVYPDIMTLAKPLAGGLPIGATLVTERVASAVAHGDHGSTFA GSPLVCSAAIAVLDKIANPSFLSSVSKKGHYFKELLIKKLGGNAHVKEVRGLGLIIGI ELDVSASPLVDACRNSGLIVLTAGKGNVVRLVPPLIISEKELEHAADVLHECLPALDS N" mobile_element 3152832..3152884 /note="source:CACAO_M_E49559_F88_scaffold_7 7623 7680" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3155548..3156276 /note="source:scaffold_3_CACTA_0382 11165 11875" /mobile_element_type="transposon:TIR/CACTA" gene 3162879..3164929 /locus_tag="TCM_027348" /note="dbxref CacaoGD:Thecc1EG027348" mRNA join(3162879..3162963,3163418..3164929) /locus_tag="TCM_027348" /product="Integrase-type DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017542001" /inference="similar to AA sequence:Phytozome:POPTR_0017s08090.1" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1134t1" CDS 3163753..3164736 /locus_tag="TCM_027348" /codon_start=1 /product="Integrase-type DNA-binding superfamily protein, putative" /protein_id="EOY25976.1" /db_xref="Phytozome:POPTR_0017s08090.1" /db_xref="TAIR:AT1G80580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGA6" /translation="MNVSFCHSLFSLTMQSSAIVNNHPLQTVSVFCRPETSETNETPC LYKPLGASSSHLSSCSSTIAPTHFYRQNYLPIYADVSGVFSSLNALDKIHETELETIM ETRPETPPVLDGIAAVVGQHVLFGNKTNPTAPTTTTELSNSVILSDATSSKLEVPGFL SASQRFGSNKRNVSPAVAVSVQKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAE EAARAYDSAARRLRGSKAKTNFEIPSVLPLASPSTSSSSTEAKKKVKGKVKTERKCAV VTSVAHLFSPSSFGGSEGKGNVELELKLGVGLNSKGTASNTSLVKQAIPLC" gene 3166529..3172325 /locus_tag="TCM_027349" /note="dbxref CacaoGD:Thecc1EG027349" mRNA join(3166529..3166634,3168098..3168260,3168350..3168617, 3168720..3168874,3168980..3169169,3169251..3169354, 3169853..3169927,3170015..3170344,3170441..3170668, 3170749..3171187,3171276..3171618,3171948..3172325) /locus_tag="TCM_027349" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041696t1" /inference="similar to AA sequence:frave:gene33519" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" CDS join(3168111..3168260,3168350..3168617,3168720..3168874, 3168980..3169169,3169251..3169354,3169853..3169927, 3170015..3170344,3170441..3170668,3170749..3171187, 3171276..3171618,3171948..3172029) /locus_tag="TCM_027349" /note="dbxref frave:gene33519; paralog of Thecc1EG041696t1; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25977.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BCQ9" /translation="MTDPIPTLDKVYSLVLREETQKNLLIQSQPVLKSVVMAVMSDEK KKYKKEGKNAYKKGKLVNCVATVKEKQFAQENEAASNNTMFQMSLIKQQVSKLMNLLN ESGISIDEGKDGSTFASASVPASNQQNKHSLVNFAFSDIGATDHISYTLDNFVSAKLV FNCFVELPNKVKALMSHIGTVKLTPFLTLTNDFVSWKVIRVAKVISGLYFMQINVDEQ ALLKHSIDKIIKPVSVYSIHSCRAVHSSFDLWHFRLVYPMAKQKKMPIPTHVQTSVSP FEIVHANIWGPYEHRKKFDKRASKCIFLGYPNGVKGYKNSYDHTFYQTPYVHESDSDF LDSVVVPSSIHALINMSTPSISPSVPSNISKTLDSLNSSSNSHEQSISSSLVDFTIDF FESISSEPFSVPSDSLPTRRSDRPRKLPKYLESFTTSLSHIHEPTTYHQAMQHDHWRD AMAAELAALEDNGTWSIVPLPVDSHAISYKWVFKTKMRVDGSIERFKARLSFLALVAA QGWYLSQLDINNAFLNGDLDEEVYMSLPPSYQVKGEYPSNVQLVCILHKSLYGLKQAL YFLKQASRQWNAKFTAVLIEYGFKQSLSYYFLFTMNSDNGGFIAPLVYVDDIIIGSSS PQLSHDVKSFLSSHFKLKRPWREHGLLGAKPMSTPIDYNHKLEKATDEERLANAIVYR QLIGKFLYLTFTRPDISYAAQILSQFMDKPGHVHMMGAYRILKYLKGLPGQGILLNSK SNLQLSAYSDNDWVGCPITRSFANCKLVHKGFTTESIPKTFKQVECA" mobile_element 3175175..3179060 /note="source:CACAO_M_E12105_F316_scaffold_3 1 3875" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3179061..3182015 /note="source:CACAO_M_E44359_F33_scaffold_6 1 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3182016..3182818 /note="source:CACAO_M_S_E5860_F197_scaffold_2 10109 10923" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3184336..3185208) /note="source:CACAO_M_E57407_F76_scaffold_9 3 881" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3186952..3191843) /locus_tag="TCM_027350" /note="dbxref CacaoGD:Thecc1EG027350" mRNA complement(join(3186952..3187559,3188741..3188857, 3188953..3189015,3189497..3189547,3191483..3191843)) /locus_tag="TCM_027350" /product="Uncharacterized protein" /inference="similar to AA sequence:frave:gene15952" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09008t00001" CDS complement(join(3187350..3187559,3188741..3188857, 3188953..3189015,3189497..3189547,3191483..3191821)) /locus_tag="TCM_027350" /note="dbxref frave:gene15952" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25978.1" /db_xref="TAIR:AT1G15800.1" /translation="MSEEEWVKEAITNDMLVAEVLLSLAQAEPPPPPPPPNQSAKNNC GSPALQLEWSVRQRRSKQALRKKGEPARASPTTPLSWSSGTSVSGGGGADGSEGSSRP SLKPVGNARSKVSATNETTPPKRSRRKKTLPELKEEMSSHLKENKSLKSELDMVKLKF ESLRATNETLSRKLKFEKEKATNESSKRIKLEYQSHQATKTTTACPEPENTISELSQQ REVAYQPSSVGCNKREVSVLDVASCEASFMLPDLNLPIGDD" gene 3197997..3199725 /locus_tag="TCM_027352" /note="dbxref CacaoGD:Thecc1EG027352" mRNA join(3197997..3198526,3199648..3199725) /locus_tag="TCM_027352" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018780t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(3198151..3198526,3199648..3199679) /locus_tag="TCM_027352" /note="paralog of Thecc1EG018780t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25979.1" /translation="MFFKEIVILTFGELMKFRLKFLNMERTLWFLVEIGFNFTKNIIL NFCYKFIMATHVDEEFNVDGIDRDYDCENILDLSGKNHDEPENERLNNQECLEPFVRM EFQSLEEALEYYPKYTKHEGFGIRLASAFASPR" mobile_element 3199530..3202497 /note="source:CACAO_M_E57391_F87_scaffold_9 1 2962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3204659..3207019 /note="source:CACAO_M_E71671_F17_scaffold_10 1 2335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3207117..3207492) /note="source:CACAO_M_E11488_F17_scaffold_2 5184 5560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3207494..3207838) /note="source:INTACT591_F264_scaffold_1-int 5685 5976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3208008..3211319 /note="source:CACAO_M_E44364_F82_scaffold_6 1 3312" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3211328..3211700) /note="source:INTACT528_F17_scaffold_6-int 3677 4050" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3211701..3212094 /note="source:CACAO_M_E4753_F17_scaffold_2 1 394" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3212099..3212993) /note="source:CACAO_M_E71671_F17_scaffold_10 9602 10310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3212994..3215746 /note="source:CACAO_M_E44365_F15_scaffold_6 1 2753" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3215747..3221735 /note="source:CACAO_M_E11488_F17_scaffold_2 1487 7546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3221734..3223921) /note="source:INTACT528_F17_scaffold_6-int 350 2524" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3224003..3224372) /note="source:CACAO_M_E4753_F17_scaffold_2 1 382" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3229304..3230722 /note="source:INTACT164_F159_scaffold_7-int 365 1667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3230949..3231605 /note="source:INTACT164_F159_scaffold_7-int 1937 2733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3232214..3235961 /note="source:INTACT164_F159_scaffold_7-int 2722 6419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3235959..3236169 /note="source:INTACT95_F143_scaffold_9-int 13848 14055" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3239017..3243118 /locus_tag="TCM_027356" /note="dbxref CacaoGD:Thecc1EG027356" mRNA join(3239017..3239201,3240530..3240544,3241562..3241611, 3241770..3241843,3242030..3242140,3242750..3243118) /locus_tag="TCM_027356" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:Glyma09g28650.2" /note="quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1129t1" CDS join(3239031..3239201,3240530..3240544,3241562..3241611, 3241770..3241843,3242030..3242140,3242750..3242850) /locus_tag="TCM_027356" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25980.1" /db_xref="Phytozome:Glyma09g28650.2" /translation="MEMVDICCGHNFITNYKFLNHHIFFPIVAKAKNSYFIMECVIQV CFLDTQLMAPPLKMYHKKVLYLGNNCTTVIFKPPRTATYIIRTTLGARSMLKMLLDAA GGIVITIDGNAILRELDLAHPAAKAQYPTMLLYFIFFRSYNNALEDTIAVLDKIAMPT GVKDHMFSLQFFP" mobile_element 3244423..3245529 /note="source:CACAO_M_E1841_F5_scaffold_1 27216 28349" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3246077..3248410 /note="source:CACAO_M_E69946_F329_scaffold_9 2764 5104" /mobile_element_type="retrotransposon:LTR/Copia" gene 3248869..3250255 /locus_tag="TCM_027357" /note="dbxref CacaoGD:Thecc1EG027357" mRNA 3248869..3250255 /locus_tag="TCM_027357" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.84 coverage" CDS 3249396..3249677 /locus_tag="TCM_027357" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25981.1" /translation="MAIATPSSMVILLVPGATLNRREEILVGWFSPPTRWAAVNSSGA YRGTINRVVAKRVLKDSGSTWLGGYACSLGKCTAYRVELWGVYSGLCLA" mobile_element complement(3250252..3250515) /note="source:scaffold_5_CACTA_0608 5838 6090" /mobile_element_type="transposon:TIR/CACTA" gene 3250699..3260905 /locus_tag="TCM_027358" /note="dbxref CacaoGD:Thecc1EG027358" mRNA join(3250699..3252100,3253144..3253226,3253744..3253855, 3258643..3258695,3260463..3260905) /locus_tag="TCM_027358" /product="Structural constituent of ribosome, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s17720.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s17720.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06763t00001" CDS join(3251143..3252100,3253144..3253226,3253744..3253855, 3258643..3258695,3260463..3260606) /locus_tag="TCM_027358" /codon_start=1 /product="Structural constituent of ribosome, putative" /protein_id="EOY25982.1" /db_xref="Phytozome:POPTR_0003s17720.1" /db_xref="TAIR:AT1G80620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LMQ3" /translation="MALHLARPKRRSLTNPSLCHLLSTFSNHPNSENTTTTDSNSPGN SPSSDNPSLISSYFSDIKAGLKHQSNERPTSPFSRNRTNPSSPTSKTIPMSAFVAEIR KNLSDYRERSAVPPPTESSAIPSQSRPHISFQEIYKRNASAKQGDSNVNPASSGPGRK LGFETIRESLGKIKKKPGATNVEEKTGPFWSLSHYKESFKLKPSEGNVVYPVIGGTEL PKSVFGREMTERTKEGEAAMKTEFVKMYSYGELGMRLKQLRPERKGGEGWFSLQELNE RLMKLREMDSKESESRIGEAFKDLRKSLYDIKRADDEKQKRTFIQRIDILDHLGRTPN FMLRPPKEHLVEKYFHPDNMSSAEKLKIELAKVRDEFKMSESDCGSARVQVAQLTTKI KHLSSVLHKKDKHSRKGLIAMVQKRKKLLKYLRRTDWDSYCLVLSKLGLRDNPDYKN" gene complement(3261290..3271205) /locus_tag="TCM_027361" /note="dbxref CacaoGD:Thecc1EG027361" mRNA complement(join(3261290..3261496,3264663..3264906, 3265003..3265036,3266893..3266943,3267807..3267921, 3268187..3268507,3269635..3269764,3270490..3270647, 3271145..3271205)) /locus_tag="TCM_027361" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002288t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element complement(3263267..3263354) /note="source:scaffold_8_CACTA_0858 1004 1095" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(3264753..3264906,3265003..3265036, 3266893..3266943,3267807..3267921,3268187..3268507, 3269635..3269764,3270490..3270593)) /locus_tag="TCM_027361" /note="paralog of Thecc1EG002288t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25983.1" /translation="MPSRYISCRLALQRHQGLYHHPTFSSSQSVEITSRVENGKGFAV EEDIPNNITANLVKLMDQVEKMEKDMRGLMDNLLLMITYDDTYKGCETRVRGVGSDLS FSGLVKLVEEVVGVNSHNNEIELHASLSHAVGVSCVVIRDDEDVASILQDERLVVVFV MVKAQNANDIPHEYGIQHSNNLQHNTRYSPRARDNRRNVPIDTHYPECQPEPRKALTS VYHFPLNPKLYPRRYPTRLSVRVRGLNQLCCISRLYNAFDQIEDDVEEDDMADWNDEL HDNCEDDYVGRHDDCSMGWTCFLLLY" mobile_element complement(3264899..3267928) /note="source:CACAO_M_E50630_F312_scaffold_7 1 2971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3270918..3272422 /note="source:CACAO_M_E44373_F17_scaffold_6 1 1505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3273098..3273136) /note="source:scaffold_3_CACTA_0382 1857 1895" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3274229..3274337 /note="source:scaffold_4_CACTA_0495 8457 8568" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3274370..3274690) /note="source:scaffold_4_CACTA_0495 8324 8624" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3274508..3274764 /note="source:scaffold_4_CACTA_0495 8345 8565" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3276701..3279231 /note="source:CACAO_M_E34124_F86_scaffold_4 411 2921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3279976..3282614) /note="source:CACAO_M_S_E16530_F33_scaffold_2 8287 10888" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3282615..3283125) /note="source:CACAO_M_E44766_F33_scaffold_6 2198 2708" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3285104..3285390 /note="source:CACAO_M_E12182_F33_scaffold_3 2406 2691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3285390..3285561) /note="source:scaffold_4_CACTA_0495 10244 10415" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3285662..3285784 /note="source:CACAO_M_E23727_F42_scaffold_4 3006 3126" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3285768..3286039) /note="source:CACAO_M_E49058_F33_scaffold_6 1 272" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3286041..3286368 /note="source:CACAO_M_E33865_F33_scaffold_4 2674 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3286859..3287684) /note="source:scaffold_4_CACTA_0495 381 1182" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3287782..3287832) /note="source:scaffold_4_CACTA_0495 362 413" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3289585..3292181 /note="source:CACAO_M_E50311_F328_scaffold_7 3288 5829" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3292690..3293105 /note="source:CACAO_M_E50311_F328_scaffold_7 6042 6457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3293753..3293972) /note="source:INTACT766_F325_scaffold_5-int 9819 10008" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3293973..3296888 /note="source:CACAO_M_E44382_F86_scaffold_6 1 2916" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3296889..3299979 /note="source:CACAO_M_E57728_F42_scaffold_9 190 3112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3302822..3304690 /note="source:scaffold_1_CACTA_0028 10154 11970" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3304691..3307676 /note="source:CACAO_M_E44384_F325_scaffold_6 1 2986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3312453..3317571 /note="source:INTACT153_F18_scaffold_9-int 210 5326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3317367..3317604) /note="source:INTACT350_F19_scaffold_7-int 2611 2859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3319372..3319417) /note="source:scaffold_5_CACTA_0610 5704 5749" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3320410..3321041) /note="source:scaffold_6_CACTA_0700 10116 10745" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3321261..3321315 /note="source:CACAO_M_E73087_F12_scaffold_10 9036 9089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3321329..3323509) /note="source:scaffold_6_CACTA_0700 5371 7540" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3322869..3325561 /note="source:scaffold_5_CACTA_0613 8022 10723" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3324127..3325924 /note="source:CACAO_Mutator_E206_scaffold_1 6280 7965" /mobile_element_type="transposon:TIR/Mutator" gene complement(3325951..3329412) /locus_tag="TCM_027368" /note="dbxref CacaoGD:Thecc1EG027368" mRNA complement(join(3325951..3326140,3327924..3328145, 3328747..3328971,3329185..3329205,3329331..3329412)) /locus_tag="TCM_027368" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element complement(3326049..3326111) /note="source:CACAO_M_E73087_F12_scaffold_10 9038 9089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3326077..3326147) /note="source:scaffold_6_CACTA_0712 1301 1366" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(3328047..3328145,3328747..3328971, 3329185..3329205,3329331..3329333)) /locus_tag="TCM_027368" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25984.1" /translation="MEEEKQCQKYSDEPSTKPKFDLEAWTKAIGRPNSTQTHIYGFGT KVPTSRLLTPTAMSKFAFGPEAASPLLPPTPKLVGYQQLSFPITDEITIDRIKPLSTK LSTDHSIDILPTE" mobile_element 3329409..3330671 /note="source:INTACT41F_F338_scaffold_1-int 7589 8852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3330707..3332016) /note="source:CACAO_M_E32900_F13_scaffold_4 2446 3765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3332018..3332087 /note="source:scaffold_1_CACTA_0028 1542 1611" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3336451..3337142 /note="source:CACAO_M_E84368_F4_scaffold_10 4539 5236" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3337140..3337426 /note="source:CACAO_M_E84368_F4_scaffold_10 12577 12864" /mobile_element_type="retrotransposon:LTR/Copia" gene 3338082..3371691 /locus_tag="TCM_027369" /note="dbxref CacaoGD:Thecc1EG027369" mRNA join(3338082..3338437,3350021..3350206,3350387..3350476, 3350601..3350798,3350921..3351005,3351253..3351419, 3351518..3351706,3351809..3351922,3352036..3352155, 3352240..3352362,3352452..3352550,3358150..3358206, 3358372..3358418,3358504..3358647,3358746..3358923, 3359094..3359174,3359303..3359386,3359623..3359728, 3363187..3363275,3364354..3364537,3367975..3368005, 3368707..3368800,3368905..3369057,3369796..3369864, 3370029..3370206,3370314..3370453,3370562..3371691) /locus_tag="TCM_027369" /product="Terpenoid cyclases family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s14600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027374t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029509001" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1042t3" CDS join(3338237..3338437,3350021..3350206,3350387..3350476, 3350601..3350798,3350921..3351005,3351253..3351419, 3351518..3351706,3351809..3351922,3352036..3352155, 3352240..3352362,3352452..3352550,3358150..3358206, 3358372..3358418,3358504..3358647,3358746..3358923, 3359094..3359174,3359303..3359386,3359623..3359728, 3363187..3363275,3364354..3364537,3367975..3368005, 3368707..3368800,3368905..3369057,3369796..3369864, 3370029..3370206,3370314..3370453,3370562..3370747) /locus_tag="TCM_027369" /note="paralog of Thecc1EG027374t1" /codon_start=1 /product="Terpenoid cyclases family protein" /protein_id="EOY25985.1" /db_xref="Phytozome:GSVIVT01029509001" /db_xref="TAIR:AT1G78955.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82140" /translation="MWRLKIGEGGNDPYLYSTNNYLGRQTWEFDPNAGTPKERAEVEE VRQNYYNNRKHVQPSSDLLWQIQFLREKNFKQTIPQPKVEDGEEITFEATTAAVRRSV HFFSALQSKDGHWPAENAGPMFYFPPLVMSLYITGHLHTIFFAEHRKEILRYIYCHQN EDGGWGLYIGGHSTMFCTALNYICMRLLGEGPDGGLNNACERSRKWILDRGGVTTIPS WGKTWLSILGVYEWSGCHPIPPEFWLLPSYFPIHPAKMFCYCRLTYMPMSYLYGRKFV GPITPLIVQLREELHIEPYNEINWSKKRHLCAKEDLHYPHTMLQIFLWDSLYIFTEPL LNCWPFNKLREKALKVTMNHIHYEDESSQYITIGCVEKPLCMLACWVEDPNGVYFKKH LARIADYVWVGEDGIKMQSFGSQVWDASLTLQALLASQLFDEIGPILMKGHNFLKNSQ VRDNPPSDFKRMFRHISKGSWTFSDRDHGWQVSDCTAESLKCCLYFAMMPPEMVGEKM ELKQFYDSVNVILSLQSENGGLSAWEPTGGGFWWEWLNPVEFLEDLVKEYEYVECTSS SIQALVLFQKLYPEHKKREIANFISKAAQFLEEIQYPDGSWYGNWGICFIYGTWFGLQ GLKAAGKTYNNCLAIRKGVDFLLKTQREDGGWGESYLSCPKRVYIPSEGNRTNLVQTA LALMGLIIGGQAERDPTPLHRAAKLLINSQLPNGDFPQQELAGVFMRNCMLHYALYRN VFPLWALAEYCKHFWQGVAAATVNGGQDEFDYCDEENPKASSDPLTDHKQTQTSPLEL EVSKRGLWCQIHRHGSKYCWPLQCPKSMPQDQTLTGSTTDHRTYEIKPKSGIVGVVGV ERWPAQEQTKIMWSLCFVCRGTDRGSTLALTSTEKNLFCTNLMHNIMLCRTNEPDAIE GELWFTIGKTKARFSKREFYLVTRLKLCAMRTLKPTAEEMLTAYWADIKFAVAEAAGA VAEAAGAVEALDSPLVAFHAASPIAPHAATPVTPHAALPLASTTVSHALAHVDACNAI GDLAGNAVGDPVGNADANAVTTSAYPAVTARAKGSDCRSGQLIGEEDGACDKEGSDIG VNLDDVGGINQSIASAQSSPPTTLIEHYRTLIPSPLEAAQYS" mobile_element 3346231..3348104 /note="source:scaffold_1_CACTA_0028 10157 11975" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3352854..3358035 /note="source:INTACT153_F18_scaffold_9-int 147 5326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3363461..3363653) /note="source:CACAO_M_S_E99196_F72_scaffold_9 1 193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3363656..3364630 /note="source:scaffold_1_CACTA_0028 242 1257" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3365328..3365492 /note="source:scaffold_10_CACTA_0137 1109 1291" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3365813..3366231 /note="source:CACAO_on_SS_E42_scaffold_2 24124 24541" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3367456..3371090 /note="source:CACAO_Mutator_E592_scaffold_3 4032 7637" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3368067..3375106 /note="source:scaffold_8_CACTA_0867 1241 7992" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3375092..3376542 /note="source:scaffold_8_CACTA_0867 8533 9984" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3377708..3377890 /note="source:CACAO_M_S_E101200_F17_scaffold_9 1 182" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3377989..3381461 /note="source:CACAO_Mutator_E592_scaffold_3 13082 16528" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3381461..3382155 /note="source:CACAO_on_E373_scaffold_1 1 728" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 3381846..3399578 /locus_tag="TCM_027374" /note="dbxref CacaoGD:Thecc1EG027374" mRNA join(3381846..3382213,3390523..3390826,3392376..3392561, 3393606..3393695,3393845..3394042,3394138..3394222, 3394441..3394607,3394726..3394914,3395018..3395131, 3395324..3395443,3395532..3395654,3395881..3395979, 3396267..3396323,3396462..3396508,3397960..3398103, 3398185..3398362,3398545..3398625,3398718..3398801, 3399174..3399578) /locus_tag="TCM_027374" /product="Beta-Amyrin Synthase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01035581001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027379t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029509001" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.19 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1178t1" mobile_element 3382156..3382380 /note="source:scaffold_8_CACTA_0867 14229 14652" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3382212..3383754 /note="source:CACAO_Mutator_E592_scaffold_3 17751 19277" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3383656..3383881) /note="source:CACAO_MITE135_scaffold_9 608 836" /mobile_element_type="transposon:TIR/MITE" mobile_element 3383811..3384351 /note="source:CACAO_on_E137_scaffold_4 219 760" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3384004..3385138 /note="source:CACAO_Mutator_E1320_scaffold_6 7642 8542" /mobile_element_type="transposon:TIR/Mutator" CDS join(3390626..3390826,3392376..3392561,3393606..3393695, 3393845..3394042,3394138..3394222,3394441..3394607, 3394726..3394914,3395018..3395131,3395324..3395443, 3395532..3395654,3395881..3395979,3396267..3396323, 3396462..3396508,3397960..3398103,3398185..3398362, 3398545..3398625,3398718..3398801,3399174..3399296) /locus_tag="TCM_027374" /note="paralog of Thecc1EG027379t1" /codon_start=1 /product="Beta-Amyrin Synthase" /protein_id="EOY25986.1" /db_xref="Phytozome:GSVIVT01029509001" /db_xref="TAIR:AT1G78955.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82140" /translation="MWRLTIGEGGNNPYIYSTNNYLGRQTWEFDPNAGTPEERAEVEE VRQNYYNNRKHVRPSSDLLWQIQSLKEKNFKQTIPPVKIKDGEEITCETATAALRRGV HLLSALQASDGHWPAENSGPMFYFPPLAMALYITGHIDTVFSAEHRKEILRYIYCHQN EDGGWGLHIEGHSIMFSTALNYICMRLLGEGPDGGQDNACKRARKWILDRGGVTTIPS WGKTWLSILGLFDWSGCHPMPPEFWVLPSYFPIHPAKMWCYCRITYLPMSYLYGKKFV GPITPLILQLREELHIEPYHKINWRQKRHLCAEEDLYYPHTVLQMLLWNSLSTFTEPL LSRWPLNKLREKALQKTMDHIHYEDECSRYITIGGVEKPLCMLACWLENPTGDYFKKH LARIADYLWVGEDGMKMQSFGSQVWDSSFALQALLASDLTNDIRPTLMKGHDFLKHSQ VKDNPPGDFKRMFRHISKGSWTFSDQDHGWQVSDCTAESLKCCLYFSKMPPETVGEKM EPEKFYDAVNVIISLQSQNGGFSGWEPATAGLWMEWLNPVEFLDDNVIEHEYTECTAS AIQALVLFTESYPGHRGKETEKCIAKAVLFLENVQKPDGSWYGSWGICFTYGTWFALG GLAAAGKNYNNCLAVRKGLDFLLETQTDDGGWGESYLSCPKEVYTPLEGNRSNLVHTA MALMGLIHGGQAKRDPNPLHRAAKLLINSQLPDGDFPQQEMMGVFMSNCMLHYASYRN TFPTWALAEYRKHVPLPSKCI" mobile_element 3396714..3397065 /note="source:INTACT135F_F90_scaffold_2-int 12866 13218" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3397541..3397933 /note="source:INTACT135F_F90_scaffold_2-int 13609 14001" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(3399533..3401005) /locus_tag="TCM_027375" /note="dbxref CacaoGD:Thecc1EG027375" mRNA complement(3399533..3401005) /locus_tag="TCM_027375" /product="RNI-like superfamily protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G80630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027380t1" /inference="similar to AA sequence:ricco:29588.m000879" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1246t2" CDS complement(3399826..3400986) /locus_tag="TCM_027375" /note="dbxref ricco:29588.m000879; paralog of Thecc1EG027380t1" /codon_start=1 /product="RNI-like superfamily protein" /protein_id="EOY25987.1" /db_xref="TAIR:AT1G80630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H0A9" /translation="MDLSGNPFITDQALVSLSLNCLFLSEIGIRDCDFITQNGIALAM LKSGNLKSISMNGIGIPSIDLCFKDSFAYARGLCELDLSNSFISDELLCLVAEACLPL TKLVLSRCFCYTFDGIYFLFSKYQSLTYLDLEGANFLNDESMMELTKFLGNLTFTNLS LCSKLTNSTFFNLTKNCPLLSIINMERTNLGVEEFPTEIVVNPRVKSLYLAWNNSLND ECIKKAAYVCPNLEVLDVTYCSHITERGILGILKSCLHIRCLEINRFEGIKNLEIDFE LPKLEVLQAEGLGINDEALTLIGKRCCRLSHLNLEGCLNVTARGVEGVVVNCKALKEM NLRWCNNVSVDIVAWMVFSRPSLRKITMPCGSVPTVNQRNFFLRHGCLVCKG" gene complement(3401061..3401955) /locus_tag="TCM_027376" /note="dbxref CacaoGD:Thecc1EG027376" mRNA complement(3401061..3401955) /locus_tag="TCM_027376" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G80630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027380t1" /inference="similar to AA sequence:ricco:29588.m000879" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage" CDS complement(3401184..3401543) /locus_tag="TCM_027376" /note="dbxref ricco:29588.m000879; paralog of Thecc1EG027380t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25988.1" /translation="MELPQECWESIFSLLQHHRYVEPLSLVCNMFLSITNHLRHTLTI TDPTLESLPRLLRRFPNLHTIIFRDIHGSLDSVLSQISQSGLPLISLDVSNQTSFPLL GLKQLGSKLRNLKELNC" mobile_element complement(3404161..3405553) /note="source:CACAO_M_S_E32621_F9_scaffold_4 1 1409" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3405909..3426354 /locus_tag="TCM_027377" /note="dbxref CacaoGD:Thecc1EG027377" mRNA join(3405909..3406024,3408869..3409090,3424599..3424946, 3426289..3426354) /locus_tag="TCM_027377" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" mobile_element 3406825..3407802 /note="source:scaffold_2_CACTA_0269 4329 5297" /mobile_element_type="transposon:TIR/CACTA" CDS join(3409023..3409090,3424599..3424935) /locus_tag="TCM_027377" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25989.1" /translation="MLLGLNFIVCIFFLFCFLFCSFREIERVSGAVVLGCGYPDREKG EKEKEKEKEKERKKREKRREKTSGERERERGRRKRKKKEKRKKSKKKKKNKRSNSLTA PFWNNFKAPNGACCCILGGLPRSTRLSFFGLF" mobile_element 3410557..3410620 /note="source:scaffold_1_CACTA_0028 2979 3041" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3411747..3412536 /note="source:INTACT1625F_F66_scaffold_10-int 7585 8347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3412121..3413458) /note="source:scaffold_6_CACTA_0709 4352 5656" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3412953..3413827 /note="source:INTACT1625F_F66_scaffold_10-int 997 1868" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3421910..3422185) /note="source:INTACT711_F307_scaffold_9-int 1721 1983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3423363..3423654) /note="source:INTACT711_F307_scaffold_9-int 10195 10480" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3424143..3424369) /note="source:INTACT711_F307_scaffold_9-int 495 728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3425305..3426424 /note="source:CACAO_on_S_E46_scaffold_2 8521 9640" /mobile_element_type="transposon:TIR/Mutator" gene complement(3425766..3435931) /locus_tag="TCM_027378" /note="dbxref CacaoGD:Thecc1EG027378" mRNA complement(join(3425766..3425991,3428139..3428533, 3429140..3429284,3435630..3435931)) /locus_tag="TCM_027378" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(3428184..3428533,3429140..3429197)) /locus_tag="TCM_027378" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25990.1" /translation="MVLDKPPELDPPESSSFYPGDFNDIARVEEKSGGSLFSVNRAPK FMDRWEECGLLDMVAIGARFTWVWKMNGKVVIRERLDRVLINCHAQEKLPEAKTVNLP CLSSNHHPVLFHFSMTTPPCLSKISHSDIKRLR" mobile_element complement(3435209..3435282) /note="source:CACAO_M_E14113_F106_scaffold_3 13785 13859" /mobile_element_type="retrotransposon:LTR/Copia" gene 3435986..3444935 /locus_tag="TCM_027379" /note="dbxref CacaoGD:Thecc1EG027379" mRNA join(3435986..3436334,3438958..3439143,3440185..3440274, 3440424..3440621,3440717..3440801,3441019..3441185, 3441304..3441492,3441596..3441709,3441875..3442021, 3442105..3442227,3442454..3442552,3442840..3442896, 3443035..3443081,3443312..3443455,3443537..3443714, 3443897..3444935) /locus_tag="TCM_027379" /product="Beta-Amyrin Synthase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s14610.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027374t1" /inference="similar to AA sequence:ricco:29588.m000889" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS join(3436134..3436334,3438958..3439143,3440185..3440274, 3440424..3440621,3440717..3440801,3441019..3441185, 3441304..3441492,3441596..3441709,3441875..3442021, 3442105..3442227,3442454..3442552,3442840..3442896, 3443035..3443081,3443312..3443455,3443537..3443714, 3443897..3443995) /locus_tag="TCM_027379" /note="dbxref ricco:29588.m000889; paralog of Thecc1EG027374t1" /codon_start=1 /product="Beta-Amyrin Synthase" /protein_id="EOY25991.1" /db_xref="TAIR:AT1G78950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82140" /translation="MWRLKIGEGGNDPYLYSTNNYLGRQTWEFDPNAGTPEERAEVEE VRQNYYNNRKHVRPSSDLLWQIQSLKEKNFKQTIPPVKIKDGEQITCETATAALRRGV HLLSALQASDGHWPAENSGPMFFFPPLAMALYITGHIDTVFPAEHRKEILRYIYCHQN EDGGWGLHIEGHSIMFSTALNYIFMRLLGEGPDGGQDNACKRARKWILDRGGVTTIPS WGKTWLSILGLFDWSGCHPMPPEFWVLPSYFPIHAAKMWCYCRITYLPMSYLYGKKFV GPITPLILQLREELHIEPYHKINWRQKRHLCAEEDLYYPHTVLQILLWGSLYTFTEPL LSRWPLNKLRERALQITMDHIHYEDECSRYITIGCVEKPLCMLACWLENPTGDYFKKH LARIADYLWVGEDGMKMQNLSFGMYMQSFGSQVWDSSFALQALLASDLTNDIRPTLMK GHDFLKHSQVKDNPPGDFKRMFRHISKGSWTFSDQDHGWQVSDCTAESLKCCLYFSKM PPETVGEKMEPEKFYDAVNVILSLQSQNGGFSGWEPATAGLWMEWLNPVEFLEDFVNE HEYTECTASAIQALVLFTESYPGHRRKEIEKCIAKAVQFLENVQKPDGSWYGGWGICF MYGTWFALGGLAAAGKNYNNCLAVRNGLDFLLETQTDDGGWGESYLSCPNKVYTPLEG NRSNLVHTAMALMGLIHGGHVTFVI" mobile_element 3437416..3437687 /note="source:CACAO_on_E33_A_scaffold_3 2913 3175" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3437677..3437842) /note="source:CACAO_on_E446_scaffold_2 949 1148" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(3444937..3450622) /locus_tag="TCM_027380" /note="dbxref CacaoGD:Thecc1EG027380" mRNA complement(join(3444937..3447468,3449548..3450020, 3450078..3450622)) /locus_tag="TCM_027380" /product="RNI-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29588.m000879" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027375t1" /inference="similar to AA sequence:ricco:29588.m000879" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1246t5" CDS complement(3445183..3446901) /locus_tag="TCM_027380" /note="dbxref ricco:29588.m000879; paralog of Thecc1EG027375t1" /codon_start=1 /product="RNI-like superfamily protein, putative" /protein_id="EOY25992.1" /db_xref="TAIR:AT1G80630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H0A9" /translation="MELPQECWESIFSLLQHHRYFEPLSLVCNMFLSITNHLRHTLTI TDATLESLPRLLRRFPNLHTIIFRDFHGSLDSVLSQISQSGLPLISLDVSNQTSFPLL GLKQLGSKLRNLKELNCSKIVYLKDSDLIEIGNCFPFLEAVDISYPDHGCGFSPNGSL DSRSFRGLVTDYGILGLASRLRRLQKIDLSGNPFITDQALVSLSLNCLFLSEIGIRDC DFITQNGIALAMLKSGNLKSISMNGIGIPSIDLCFKDSFAYARGLCELDLSNSFISDE LLCLVAEACLPLTKLVLSRCFCYTFDGIYFLLSKYQSLTYLDLEGANFLNDESMMELT KFLGNLTFTNLSLCSKLTNSTFFNLTKNCPLLSIINMERTNIGVEEFPTEIVVNPRVK SLYLAWNNSLNDECIKKAAYVCPNLEVLDVTYCSHITERGILGILKSCLHIRCLEINR CEGIKNLEIDFELPKLEVLQAEGLGINDEALTLIGKRCCRLSHLNLEGCLNVTARGVE GVVVNCKALKEMNLRWCNNVSVDIVAWMVFSRPSLRKITMPCGSVPTVNQRNFFLRHG CLLCKG" mobile_element complement(3449473..3452353) /note="source:CACAO_M_E14113_F106_scaffold_3 7637 10520" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3454564..3454834 /note="source:CACAO_M_E13038_F22_scaffold_3 99 334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3455717..3455858 /note="source:INTACT711_F307_scaffold_9-int 1844 1985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3464674..3464821 /note="source:CACAO_on_E446_scaffold_2 931 1053" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3464705..3464854) /note="source:CACAO_on_E33_A_scaffold_3 7403 7595" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3465006..3465094) /note="source:CACAO_on_E33_A_scaffold_3 11625 11703" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(3465745..3470562) /locus_tag="TCM_027382" /note="dbxref CacaoGD:Thecc1EG027382" mRNA complement(join(3465745..3467908,3470428..3470562)) /locus_tag="TCM_027382" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29588.m000878" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1190t1" CDS complement(3466538..3467734) /locus_tag="TCM_027382" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25993.1" /translation="MNASRVVLVMLALLLISQIVTEARSHSHHRGQKEELRTRRGSSR SRGSGGRRARRSSNCDPFFLYLFGTCGQWPFPTAPSPDNPFEPTPRPSPRRRSPPLPP PVVQPPLLPSPPPLLPSPPPPITSPPPSSPPPSPPPPSLPPPSPPPPFPSPPPPLVPS PPPPSISPPTLPFVFPPPPLVSSPPPPEITPSPIFPWLSPPDINADTPPIPLFSPPPD LFLPPPEEDTPPDELTPAPPLVPFFSPPDEFTPATPLLPIFAPPSEPNLPPDEFQPAP PFLPISFPPPAQDFPPDETEPAPLVPIFSSPPEPPQIPLLPPEQPFTFTPPIETNPGA PNLFLPPPVIPAIPEIPDQQALPFSSTPPAPDTGFVEPVQPMSPPQPFLPPFQLPPSD SPPFKS" mobile_element 3469339..3470143 /note="source:CACAO_M_S_E66867_F2_scaffold_6 1 805" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3471249..3471751) /locus_tag="TCM_027383" /note="dbxref CacaoGD:Thecc1EG027383" mRNA complement(join(3471249..3471522,3471626..3471751)) /locus_tag="TCM_027383" /product="Membrane lipoprotein-like protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1192t1" CDS complement(join(3471350..3471522,3471626..3471695)) /locus_tag="TCM_027383" /codon_start=1 /product="Membrane lipoprotein-like protein" /protein_id="EOY25994.1" /translation="MVSPKLQAMGFLFLSIVLFAQLNRIGAQSTNNCEIVKGTTCFVV SECIKPCESIGHTPTSALCIPSPIAGEGLTCCCSTL" gene 3476046..3481325 /locus_tag="TCM_027384" /note="dbxref CacaoGD:Thecc1EG027384" mRNA join(3476046..3476103,3477236..3477651,3478340..3478510, 3478648..3478898,3479000..3479132,3479243..3479306, 3479403..3479499,3479605..3479704,3480218..3480518) /locus_tag="TCM_027384" /product="Serine/threonine-protein kinase PBS1 isoform 3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036937t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017568001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc132t4; inference alignment:Newbler:10:TSA:cgbaL_g02925t00001" mRNA join(3477236..3477651,3478340..3478510,3478648..3478898, 3479000..3479132,3479243..3479306,3479403..3479499, 3479605..3479704,3480218..3480336,3480427..3480516, 3480599..3480715,3480828..3481325) /locus_tag="TCM_027384" /product="Serine/threonine-protein kinase PBS1 isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036937t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017568001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02925t00001" mRNA join(3477295..3477651,3478340..3478510,3478648..3478898, 3479000..3479132,3479243..3479306,3479403..3479499, 3479605..3479704,3480218..3480336,3480427..3480516, 3480599..3480704,3480828..3481253) /locus_tag="TCM_027384" /product="Serine/threonine-protein kinase PBS1 isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036937t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017568001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1279t2; inference alignment:Newbler:10:TSA:cgbaL_g02925t00001" CDS join(3477471..3477651,3478340..3478510,3478648..3478898, 3479000..3479132,3479243..3479306,3479403..3479499, 3479605..3479704,3480218..3480336,3480427..3480516, 3480599..3480715,3480828..3480932) /locus_tag="TCM_027384" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG036937t1" /codon_start=1 /product="Serine/threonine-protein kinase PBS1 isoform 1" /protein_id="EOY25995.1" /db_xref="Phytozome:GSVIVT01017568001" /db_xref="TAIR:AT1G80640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0V7T5" /translation="MGDMNLLCLLPPMWACTFSLLSLIILARPESTVSSISASVLLSK QEPISQFSSEMEAVSPGAAVVRVVHHQDLNRRILVALIVASTLLGGILLFLLCFWICR QKNLKNSNGKSKQNLEPAKALSLSPIVDRFNSLWMASKKGSVAVIEYQLLEVATNNFQ ESNVLGEGGRGRVYKAHFDEKFLAAVKKLDGGGQDAEREFENELEWLVKIQHQNIVSL LGYCIHGETRLLVYEMMQNGSLESQLHGPTQGSALTWHLRMKIAIDVARALEHLHEHC SPPVVHRDIKSSNILLDSNFNAKLSDFGLAVTTGSQNKNVKLSGTLGYVAPEYLLEGK LTDKSDVYAFGVVLLELLIGKKPLEKMSPTQCQSLVTWAMPQLTDRSKLPNIVDSVIK ETMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSLIPLVPAELGGSLRVATASPPYL LRILFHMNFSSGGLMQFNYAMVVLI" CDS join(3477471..3477651,3478340..3478510,3478648..3478898, 3479000..3479132,3479243..3479306,3479403..3479499, 3479605..3479704,3480218..3480336,3480427..3480516, 3480599..3480704,3480828..3480907) /locus_tag="TCM_027384" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG036937t1" /codon_start=1 /product="Serine/threonine-protein kinase PBS1 isoform 2" /protein_id="EOY25996.1" /db_xref="Phytozome:GSVIVT01017568001" /db_xref="TAIR:AT1G80640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0V7T5" /translation="MGDMNLLCLLPPMWACTFSLLSLIILARPESTVSSISASVLLSK QEPISQFSSEMEAVSPGAAVVRVVHHQDLNRRILVALIVASTLLGGILLFLLCFWICR QKNLKNSNGKSKQNLEPAKALSLSPIVDRFNSLWMASKKGSVAVIEYQLLEVATNNFQ ESNVLGEGGRGRVYKAHFDEKFLAAVKKLDGGGQDAEREFENELEWLVKIQHQNIVSL LGYCIHGETRLLVYEMMQNGSLESQLHGPTQGSALTWHLRMKIAIDVARALEHLHEHC SPPVVHRDIKSSNILLDSNFNAKLSDFGLAVTTGSQNKNVKLSGTLGYVAPEYLLEGK LTDKSDVYAFGVVLLELLIGKKPLEKMSPTQCQSLVTWAMPQLTDRSKLPNIVDSVIK ETMDLKHLYQVAAVAVLCIQPEPSYRPLITDVLHSLIPLVPAELGGCDGLSSLLAAHS FPHELFLRGPDAI" CDS join(3477471..3477651,3478340..3478510,3478648..3478898, 3479000..3479132,3479243..3479306,3479403..3479499, 3479605..3479704,3480218..3480423) /locus_tag="TCM_027384" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG036937t1" /codon_start=1 /product="Serine/threonine-protein kinase PBS1 isoform 3" /protein_id="EOY25997.1" /db_xref="Phytozome:GSVIVT01017568001" /db_xref="TAIR:AT1G80640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0V7T5" /translation="MGDMNLLCLLPPMWACTFSLLSLIILARPESTVSSISASVLLSK QEPISQFSSEMEAVSPGAAVVRVVHHQDLNRRILVALIVASTLLGGILLFLLCFWICR QKNLKNSNGKSKQNLEPAKALSLSPIVDRFNSLWMASKKGSVAVIEYQLLEVATNNFQ ESNVLGEGGRGRVYKAHFDEKFLAAVKKLDGGGQDAEREFENELEWLVKIQHQNIVSL LGYCIHGETRLLVYEMMQNGSLESQLHGPTQGSALTWHLRMKIAIDVARALEHLHEHC SPPVVHRDIKSSNILLDSNFNAKLSDFGLAVTTGSQNKNVKLSGTLGYVAPEYLLEGK LTDKSDVYAFGVVLLELLIGKKPLEKMSPTQCQSLVTWVISFNASIDLKGIYSWLNCI LSLVCMQF" mobile_element 3481623..3482418 /note="source:CACAO_Again_on_E153_scaffold_6 1 796" /mobile_element_type="transposon:TIR/hAT" mobile_element 3484435..3484505 /note="source:INTACT183F_F349_scaffold_3-int 7470 7550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3484925..3487705) /note="source:INTACT47_F12_scaffold_3-int 6694 9483" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3488775..3489777 /locus_tag="TCM_027385" /note="dbxref CacaoGD:Thecc1EG027385" mRNA 3488775..3489777 /locus_tag="TCM_027385" /product="Beta-3 adrenergic receptor, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s17800.1" /inference="similar to AA sequence:frave:gene15944" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc4851t1" CDS 3488992..3489717 /locus_tag="TCM_027385" /note="dbxref frave:gene15944" /codon_start=1 /product="Beta-3 adrenergic receptor, putative" /protein_id="EOY25998.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H0B3" /translation="MVFSNWICTKNTKNMFVKIVHPGGHVELHDRPVLAAEIICRNPR CVVAHPHVFQQPWSIVAPETVLMPGQKFYVVPLSTIRKLQRLSNKHSPFPDRQTPPSK SQKSEEPDPDSDNPSICWFFMQKNTLKNPYSSINHLDDEGANANSTDSKGEKGVSKDM VKDGSCFSDKNCFTCMITGVKTKANGDDSGEETRSSSNFVPPETRGHTRKRTRRHAKG SPKRHAAFDQWQPSLASINETEE" mobile_element 3491896..3492127 /note="source:INTACT539_F11_scaffold_2-int 775 1019" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3492288..3494024) /note="source:CACAO_M_S_E84604_F20_scaffold_6 4490 6139" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3495955..3510381) /locus_tag="TCM_027386" /note="dbxref CacaoGD:Thecc1EG027386" mRNA complement(join(3495955..3496705,3496977..3497166, 3510234..3510381)) /locus_tag="TCM_027386" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014810t1" /note="quality class is weak, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS complement(join(3496469..3496705,3496977..3497105)) /locus_tag="TCM_027386" /note="paralog of Thecc1EG014810t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY25999.1" /translation="MLPFVLFAMLNLRPLLISSSLARLLRTSGCTIAAFGGLAGFTQE IKRKVISKWMRPPPGSYKLNVDSFAFGKPRLAGMEGAIRDHEGFIKGVFSTPIGIEDS NYLEFLAIKEGLFFFFSSP" mobile_element 3500656..3505524 /note="source:CACAO_M_S_E66869_F40_scaffold_6 1 4869" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3507487..3510802 /note="source:CACAO_Again_on_S_E228_scaffold_7 1 3330" /mobile_element_type="transposon:TIR/hAT" gene 3511178..3513046 /locus_tag="TCM_027389" /note="dbxref CacaoGD:Thecc1EG027389" mRNA join(3511178..3511392,3511490..3511742,3512602..3513046) /locus_tag="TCM_027389" /product="RNAse THREE protein 1, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29588.m000875" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b026494t1a3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15630t1" mRNA join(3511196..3511392,3511490..3511742,3512265..3512379, 3512602..3513046) /locus_tag="TCM_027389" /product="RNAse THREE protein 1, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29588.m000875" /inference="similar to AA sequence:ricco:29588.m000875" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15630t1" CDS join(3511261..3511392,3511490..3511742,3512265..3512379, 3512602..3512773) /locus_tag="TCM_027389" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29588.m000875" /codon_start=1 /product="RNAse THREE protein 1, putative isoform 1" /protein_id="EOY26000.1" /db_xref="TAIR:AT1G80650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H0B4" /translation="MAENLCKRKREMEKTKSNRKPQKFIVNLKDLPPIDPSLITPLCQ DKYENPSSRNDHNVARRSPKEGTNLVGFDEGLRIADIADRNLGQDMKVEEGVCLSSTK LIDSNNAKGFNFNRENENCRNNLAIQDAPKRVSAKSELHEICATNNWKLPLYECCKEE GLSHMKLFTFKVVVEMQKTSTTILECFSDPQPKKKMAAEHAAEGALWYLRHLGYFSPN KSKAC" CDS join(3511261..3511392,3511490..3511742,3512602..3512729) /locus_tag="TCM_027389" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNAse THREE protein 1, putative isoform 2" /protein_id="EOY26001.1" /db_xref="TAIR:AT1G80650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H0B4" /translation="MAENLCKRKREMEKTKSNRKPQKFIVNLKDLPPIDPSLITPLCQ DKYENPSSRNDHNVARRSPKEGTNLVGFDEGLRIADIADRNLGQDMKVEEGVCLSSTK LIDSNNAKGFNFNRENENCRNNLAIQDSPLRLLLRCRKHRLQFWSALVILSPRRKWQQ SMQLKGHCGT" gene complement(3513991..3519316) /locus_tag="TCM_027390" /note="dbxref CacaoGD:Thecc1EG027390" mRNA complement(join(3513991..3514508,3514603..3514784, 3514875..3515057,3515164..3515337,3515408..3515961, 3516108..3516417,3516517..3516621,3516697..3516819, 3516938..3517057,3517177..3517503,3517631..3517945, 3518101..3518238,3518309..3518407,3519016..3519316)) /locus_tag="TCM_027390" /product="H(+)-ATPase 9" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g02940.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027391t1" /inference="similar to AA sequence:frave:gene15943" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.27 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1256t4_C1" CDS complement(join(3514412..3514508,3514603..3514784, 3514875..3515057,3515164..3515337,3515408..3515961, 3516108..3516417,3516517..3516621,3516697..3516819, 3516938..3517057,3517177..3517503,3517631..3517945, 3518101..3518238,3518309..3518407,3519016..3519069)) /locus_tag="TCM_027390" /note="dbxref frave:gene15943; paralog of Thecc1EG027391t1" /codon_start=1 /product="H(+)-ATPase 9" /protein_id="EOY26002.1" /db_xref="TAIR:AT1G80660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E1UHH0" /translation="MADRSISLEEIKNETVDLESKFLKFLGFMWNPLSWVMEIAAIMA ICLANGGGKPPDWQDFAGILVLLFINSTISFVEENNAGNAAAALMAGLAPKTKVLRDE RWCEQEAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVNKNPGDEV FSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTAIGNFCICSIAVG MIIEVVVMYPIQHRRYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITK RMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSMIEVFTNNVDKDMVILLAARASRVEN QDAIDACIVGMLGDPKEARAGITEVHFFPFNPVDKRTAMTYIESDGSWHRVSKGAPEQ IIELCNLRDELKKKAHDVIANFADRGLRSLAVAKQTVPEKTKESPGESWQFVGLLPLF DPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDE TIEAIAVDELIEKADGFAGVFPGSVVVVLTDGYLSEHKYEIVKRLQQRNHICGMTGDG VNDAPALKKADIGIAVDDATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTI YAVSITIRIVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWK LKEIFATGIVLGAYLACMTVVFFWAAQESDFFSDKFGVRSIRNSHEELTAAVYLQVSI VSQALIFVTRSRSWSFIERPGLLLVTAFIIAQLVATILAVYANWGFARIKGIGWGWAG VIWIYSVVFYFPLDVLKFLIRYSLSGKAWDNLLQNKTAFTTKKDYGRGEREAQWAMAQ RTLHGLQPPETTDLFNEKTNYRELSEIAEQARKRAEVARLRELHTLKGHVESVVKLKG LDIDTIQQHYTV" gene complement(3519363..3542970) /locus_tag="TCM_027391" /note="dbxref CacaoGD:Thecc1EG027391" mRNA complement(join(3519363..3519386,3535217..3535392, 3535489..3535670,3535776..3535958,3536057..3536230, 3536302..3536816,3537149..3537458,3537551..3537655, 3537745..3537867,3538061..3538180,3538351..3538677, 3538838..3539152,3539284..3539421,3539517..3539615, 3539712..3539831,3540308..3540569,3542840..3542970)) /locus_tag="TCM_027391" /product="H(+)-ATPase 9" /inference="alignment:exonerate- protein:2:frave:gene15943.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027390t1" /inference="similar to AA sequence:frave:gene15943" /note="quality class is strong, express is weak, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.17 coverage" mobile_element complement(3520404..3520842) /note="source:CACAO_Again_on_E153_scaffold_6 199 656" /mobile_element_type="transposon:TIR/hAT" mobile_element 3521777..3524593 /note="source:CACAO_M_E50108_F4_scaffold_7 33 2875" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3524721..3527840) /note="source:CACAO_M_E35241_F115_scaffold_5 1 3119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3527841..3529687 /note="source:CACAO_M_S_E51722_F106_scaffold_4 2773 4630" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3528992..3530489) /note="source:INTACT11_F4_scaffold_8-int 3545 5066" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3531269..3532613 /note="source:CACAO_M_S_E90022_F9_scaffold_8 13163 14497" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(3535296..3535392,3535489..3535670, 3535776..3535958,3536057..3536230,3536302..3536816, 3537149..3537458,3537551..3537655,3537745..3537867, 3538061..3538180,3538351..3538677,3538838..3539152, 3539284..3539421,3539517..3539615,3539712..3539831, 3540308..3540361)) /locus_tag="TCM_027391" /note="dbxref frave:gene15943; paralog of Thecc1EG027390t1" /codon_start=1 /product="H(+)-ATPase 9" /protein_id="EOY26003.1" /db_xref="TAIR:AT1G80660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E1UHH0" /translation="MVDKENSLQEIKSENVDLERIPIEEVFEQLKCTKEGLTSEEGHK RLQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEIAAIMAICLANGGGKPPDWQDFLG IVVLLLINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWCEQEAAILVPGDIISI KLGDIIPADARLLDGDPLKIDQSALTGESLPVSKNSGDEVFSGSTVKQGEIEAVVIAT GVHTFFGKAAHLVDSTNNVGHFQKVLTAIGNFCICSIAIGMVIEILVMYPIQRRRYRD GIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDK TGTLTLNKLTVDKSMIEVFIKDVDKDMLLLLAARASRVENQDAIDACVVGMLGDPKEA RADITEVHFFPFNPVDKRTAMTYIDSDGSWHRVSKGAPEQIISLCNLREDVKKKAHDI IDKFADRGLRSLGVARQTVPEKTKESSGDPWEFVGLMPLFDPPRHDSAETIRRALHLG VNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDETIDAIGVDELIEKADGFA GVFPEHKYEIVKRLQQRNHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVL TEPGLSVIVCAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLLALIWKFDFSPFMVLI IAILNDGTIMTISKDRVKPSPMPDSWKLKEIFATGIVLGAYLACMTVVFFWAAQESDF FSDKFGVRSIRNSHEELTAAVYLQVSIVSQALIFVTRSRSWSFIERPGLLLVTAFIIA QLVATILAVYANWGFARMKGIGWGWAGVIWIYSIVFYIPLDILKFFIRYSLSGKAWDN LLQNKTAFTTKKDYGREEREAQWATAQRTLHGLQTPGSVDILNDKNSHEELSEIAEQA KKRAEVARLREFHTLKGHVESVVKLKGLDIDTIQQHYTV" mobile_element 3543375..3544003 /note="source:INTACT170_F12_scaffold_5-int 1178 1808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3543980..3544091) /note="source:scaffold_9_CACTA_0927 15244 15357" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3544074..3545846) /note="source:CACAO_Mariner_E180_scaffold_6 6249 8014" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 3547175..3549708 /note="source:CACAO_M_E42691_F9_scaffold_5 3329 5913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3554344..3556389 /note="source:scaffold_5_CACTA_0615 181 2253" /mobile_element_type="transposon:TIR/CACTA" gene complement(3561397..3562352) /locus_tag="TCM_027394" /note="dbxref CacaoGD:Thecc1EG027394" mRNA complement(join(3561397..3562022,3562151..3562352)) /locus_tag="TCM_027394" /product="Integrase-type DNA-binding superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s14720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036933t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s14720.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1741t1" CDS complement(join(3561569..3562022,3562151..3562233)) /locus_tag="TCM_027394" /note="paralog of Thecc1EG036933t1" /codon_start=1 /product="Integrase-type DNA-binding superfamily protein" /protein_id="EOY26004.1" /db_xref="Phytozome:POPTR_0001s14720.1" /db_xref="TAIR:AT5G25190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94AW5" /translation="MGRPQQRYRGVRQRHWGSWVSEIRHPVLKTRIWLGTFETAEDAA RAYDEAARLMCGQKARTNFPYNPNEPQSSSSKLLSATLAAKLHKCHMAALQLAKKNAA KESYAAQCHPLAPTSGIAQSIGEMDCRRQPENKWDGEESQVGSEQQFIPLEDDHIDQM IEELLDYGSIELCSVTST" gene complement(3568325..3573365) /locus_tag="TCM_027395" /note="dbxref CacaoGD:Thecc1EG027395" mRNA complement(join(3568325..3568954,3569085..3569165, 3569245..3569318,3569846..3569923,3570074..3570202, 3570725..3570805,3571266..3571407,3571810..3572003, 3572102..3572182,3572378..3572464,3573002..3573057, 3573161..3573365)) /locus_tag="TCM_027395" /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029758001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007532t1" /inference="similar to AA sequence:Phytozome:Glyma02g13780.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1296t3; inference alignment:Newbler:10:TSA:cgbaB_g06154t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc238t9_C2" mRNA complement(join(3568383..3568954,3569085..3569165, 3569247..3569318,3569846..3569923,3570074..3570202, 3570725..3570805,3571266..3571407,3571810..3572003, 3572102..3572179,3572378..3572464,3573002..3573057, 3573161..3573332)) /locus_tag="TCM_027395" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029758001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007532t1" /inference="similar to AA sequence:ricco:29588.m000872" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06154t00001" CDS complement(join(3568876..3568954,3569085..3569165, 3569245..3569318,3569846..3569923,3570074..3570202, 3570725..3570805,3571266..3571407,3571810..3572003, 3572102..3572182,3572378..3572464,3573002..3573055)) /locus_tag="TCM_027395" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG007532t1" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /protein_id="EOY26006.1" /db_xref="Phytozome:Glyma02g13780.1" /db_xref="TAIR:AT1G80670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38942" /translation="MSTFGAAAANHNPNKSFEVLQPPSDSVSSLSFSPKANILVATSW DNQQVRCWEISRNGTAVASTPKASITHDQPVLCSTWKDDGTTVFSGGCDKQVKMWPLL SGGQPMTVAMHDAPIKEVAWIPEMNLLVTGSWDKTLKYWDTRQPNPVHTQQLPDRCYA LTVKYPLMVVGTADRNLIVFNLQNPQTEYKRVVSPLKYQTRCVAAFPDQQGFLVGSIE GRVGVHHLDDGQQNKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKD SKQRLKAMSRCSQPIPCSTFNNDGSIFAYSVFVMTGVRVLKITTHQQQRPTFSCTCLR NLKLKASHELEQVVESEGCFWLEND" CDS complement(join(3568904..3568954,3569085..3569165, 3569247..3569318,3569846..3569923,3570074..3570202, 3570725..3570805,3571266..3571407,3571810..3572003, 3572102..3572179,3572378..3572464,3573002..3573055)) /locus_tag="TCM_027395" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29588.m000872; paralog of Thecc1EG007532t1" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY26005.1" /db_xref="TAIR:AT1G80670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38942" /translation="MSTFGAAAANHNPNKSFEVLQPPSDSVSSLSFSPKANILVATSW DNQVRCWEISRNGTAVASTPKASITHDQPVLCSTWKDDGTTVFSGGCDKQVKMWPLLS GGQPMTVAMHDAPIKEVAWIPEMNLLVTGSWDKTLKYWDTRQPNPVHTQQLPDRCYAL TVKYPLMVVGTADRNLIVFNLQNPQTEYKRVVSPLKYQTRCVAAFPDQQGFLVGSIEG RVGVHHLDDGQQNKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS KQRLKAMSRCSQPIPCSTFNNDGSIFAYSVCYDWSKGAENHNPSTAKTYIFLHLPQES EVKGKPRVGTSGRK" gene 3574387..3585387 /locus_tag="TCM_027396" /note="dbxref CacaoGD:Thecc1EG027396" mRNA join(3574387..3574903,3575467..3578078,3578524..3578647, 3579447..3579595,3579906..3580003,3584344..3585387) /locus_tag="TCM_027396" /product="Suppressor of auxin resistance 3" /inference="alignment:exonerate- protein:2:ricco:29588.m000871" /inference="similar to AA sequence:ricco:29588.m000871" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1281t2" CDS join(3574873..3574903,3575467..3578078,3578524..3578647, 3579447..3579595,3579906..3580003,3584344..3584539) /locus_tag="TCM_027396" /note="dbxref ricco:29588.m000871" /codon_start=1 /product="Suppressor of auxin resistance 3" /protein_id="EOY26007.1" /db_xref="TAIR:AT1G80680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVI5" /translation="MASASFLPASGTLSEIDNTTSDKSTSGTLFDVENCDLQITSLYK KRSLSTTTDFLSHYVSRKIKESLPSLHSSDYYMEPSLKDMVTLELMDPGFCSRIPDFV VGRIGYGCVKFFGNTDVRGLNLDQIVKFHRHEVIVYEDESNKPMVGQGLNKTAEVTLR LQLKHLILEKQEVDGIVKKLGESMTRQGAQFIAFDPANGEWKFLVDHFSRFGLSEDEE EDIIMDDATGVVQDPGEMNGGENCGIDEDMQIDTNGLVLSHSLPAHLGLDPLKMKEMR MLMFPVEEEEEIEDFRGAASHQKPAFGKEYIRSPLHNSNQRMSHRSSPPVVRKTPVAL LEYNSGNFDSSSSGNVLMVQENKGMPLKTVKKEGFKLDLKQETPVTGSHSRNIVDAAL FMGRSFRVGWGPNGILVHSGAPVGSNDSQRVLSSVINIEKVAIDKVVRDENNKVKKEL IDFAFDAPLNLHKALNYEEKELEVGYFKLKLLKVVSDRLELSEICRSYIDIIERQLEV PGLSSSARLVLMHQVMVWELIKVLFSERENSAHLKSMGADNEEDEMQDIKEGPPEVDL ESLPLIRRAEFSCWLQESVCHRVQEGISSVNDSGYLEHLFFLLTGRQLDAAVELAASK GDVRLACLLSQAGGSTVNRSDVARQLDIWKINGLDFKFIEKDRIRLYELLAGNIVGAM HGVKIDWKRFLGLLMWYHLPPDTTLPTVFQTYQQLLDDGKAPYPVPIYVDEGPVEENA NWSRVERFDLSYHLMLLHASEESQLCSLKTMFSTFSSTHDPLDYHMIWHQRAILEAVG AFCSNDLQALDMGLISQLLCQGQCHWAIYVALHMPYRDDYPYLQAILIREILFQYCES WSSQGSQRQFIEDLGVPLEWLHESMAVYFNYHGDLPKALEHFLECASWQKAHSIFMTS VSHVLFLSANHSEVWRIATSMEDHKSEIENWDLGAGIYISFYVVRSSLQEDNNTMGEL DSLDSKNAACRDFLGRLHESLAVWGGRLPVDARVAYSKMAEEICDLLLSEISEGPTRD DQLSCFDTVFSAPIPEDLRSNHLQDAVTLFTCHLSEVAS" mobile_element complement(3580805..3580943) /note="source:scaffold_5_CACTA_0612 14322 14498" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3588122..3590221) /note="source:CACAO_M_E27_F84_scaffold_1 3497 5608" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3590998..3591260) /note="source:CACAO_M_E27_F84_scaffold_1 1442 1705" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3591261..3592792 /note="source:CACAO_M_E71478_F17_scaffold_10 1 1514" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3592798..3593117 /note="source:INTACT566_F257_scaffold_7-int 4563 4882" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3593511..3594263 /note="source:CACAO_M_E4753_F17_scaffold_2 7256 7819" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3598710..3606220 /locus_tag="TCM_027399" /note="dbxref CacaoGD:Thecc1EG027399" mRNA join(3598710..3598872,3600070..3600154,3601323..3601397, 3601484..3601520,3602064..3602147,3602254..3602314, 3602414..3602520,3602924..3602989,3604475..3604629, 3605936..3606220) /locus_tag="TCM_027399" /product="Domain of Uncharacterized protein function (DUF298) isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g02920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037113t1" /inference="similar to AA sequence:ricco:29588.m000870" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09671t00001" mRNA join(3598714..3598872,3600070..3600154,3601323..3601397, 3601484..3601520,3602064..3602147,3602254..3602314, 3602414..3602520,3602924..3602989,3604475..3604629, 3604774..3605074) /locus_tag="TCM_027399" /product="Domain of Uncharacterized protein function (DUF298) isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g02920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037113t1" /inference="similar to AA sequence:ricco:29588.m000870" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09671t00001; alternateUTRof:Thecc1EG027399t1; inference alignment:Newbler:10:TSA:cgbaP2_g09671t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc224t3" CDS join(3598785..3598872,3600070..3600154,3601323..3601397, 3601484..3601520,3602064..3602147,3602254..3602314, 3602414..3602520,3602924..3602989,3604475..3604570) /locus_tag="TCM_027399" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29588.m000870; paralog of Thecc1EG037113t1" /codon_start=1 /product="Domain of Uncharacterized protein function (DUF298) isoform 1" /protein_id="EOY26008.1" /db_xref="TAIR:AT1G15860.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GMC8" /translation="MMRRSASKKTGQPNSTNPITYSPSDLFRTASSKASSKEMERIDN LFYAYANRSSGMIDPEGIETLCSDMEVDHTDVRILMLAWKMRAEKQGYFILEEWRRGL KALRADTVSKLRKALPELEKEIRRPSNFVDFYSYSFRYCLTEEKQKSIDIESICQLLD LVLGSQFRAQVDYFIDYLKIQSDYKVINMDQWMGFFRFCNEISFPDLNNYNPDLAWPL VLDNFVEWMQAKQS" CDS join(3598785..3598872,3600070..3600154,3601323..3601397, 3601484..3601520,3602064..3602147,3602254..3602314, 3602414..3602520,3602924..3602989,3604475..3604570) /locus_tag="TCM_027399" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29588.m000870; paralog of Thecc1EG037113t1" /codon_start=1 /product="Domain of Uncharacterized protein function (DUF298) isoform 1" /protein_id="EOY26009.1" /db_xref="TAIR:AT1G15860.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GMC8" /translation="MMRRSASKKTGQPNSTNPITYSPSDLFRTASSKASSKEMERIDN LFYAYANRSSGMIDPEGIETLCSDMEVDHTDVRILMLAWKMRAEKQGYFILEEWRRGL KALRADTVSKLRKALPELEKEIRRPSNFVDFYSYSFRYCLTEEKQKSIDIESICQLLD LVLGSQFRAQVDYFIDYLKIQSDYKVINMDQWMGFFRFCNEISFPDLNNYNPDLAWPL VLDNFVEWMQAKQS" gene complement(3607373..3609300) /locus_tag="TCM_027401" /note="dbxref CacaoGD:Thecc1EG027401" mRNA complement(join(3607373..3608043,3608364..3608651, 3608734..3608773,3608921..3608958,3609020..3609300)) /locus_tag="TCM_027401" /product="PPPDE thiol peptidase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s17880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036931t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s17880.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08929t00001" CDS complement(join(3607793..3608043,3608364..3608651, 3608734..3608773,3608921..3608958,3609020..3609152)) /locus_tag="TCM_027401" /note="paralog of Thecc1EG036931t1" /codon_start=1 /product="PPPDE thiol peptidase family protein, putative" /protein_id="EOY26010.1" /db_xref="Phytozome:POPTR_0003s17880.1" /db_xref="TAIR:AT1G80690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TZG1" /translation="MLCRKNSSCEETGSVPVYLNVYDLTPINGYAYWFGLGVYHSGVQ VRSVVGVGLTSSKESVAEVSLTKMSLVHGVEYAFGAHEYPTTGIFEAEPKQCDGFTFR KSILIGKTDLGPADVRGVMEDLAEEYKGNAYNLITKNCNHFCNDACVRLTGNPIPSWV NRLARIGFFCNCVLPVTLNATKVRHHRIEDKPCEAEKKKLTSSSNRFTSSSNSSSSSN SSPSVTQTRGRSRSRRSLPPSSPLILGPSSS" gene 3615846..3621253 /locus_tag="TCM_027402" /note="dbxref CacaoGD:Thecc1EG027402" mRNA join(3615846..3616165,3617092..3617141,3617256..3617308, 3617446..3617917,3618030..3618069,3618425..3619304, 3620106..3620428,3620763..3621253) /locus_tag="TCM_027402" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s14760.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s14760.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1254t2" CDS join(3615921..3616165,3617092..3617141,3617256..3617308, 3617446..3617901) /locus_tag="TCM_027402" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26011.1" /db_xref="Phytozome:POPTR_0001s14760.1" /db_xref="TAIR:AT1G80980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GMC6" /translation="MIRARTACARFSTHFNLLRTRPFCSSTKDSNNNKKKNKDNVDGS IESNVSTYNESYRQLDNLDFMTAAKILFTHPPKKKKFGIDFHLVQLFFACMPSLAVYL VAQYARYEMRKMEAELEEKKKQEEEAKKKQEEEEEKKKQKEEEKAKEMELIATEHNKG GTDTELLQVKVRLGKLEEAVKEIVVESKKQSAGSITKSQQNASEPGEAQRTSESSSTL GQDKLAKQKSTEQTLSFDQGKVRSAAPVSDASQKDQKGENQKPSQDAKK" gene 3618943..3621082 /locus_tag="TCM_027403" /note="dbxref CacaoGD:Thecc1EG027403" mRNA join(3618943..3619304,3620106..3620428,3620763..3621082) /locus_tag="TCM_027403" /product="Mitochondrial glycoprotein family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017565001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036929t1" /inference="similar to AA sequence:frave:gene15935" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12741t00001" CDS join(3619098..3619304,3620106..3620428,3620763..3620925) /locus_tag="TCM_027403" /note="dbxref frave:gene15935; paralog of Thecc1EG036929t1" /codon_start=1 /product="Mitochondrial glycoprotein family protein, putative" /protein_id="EOY26012.1" /db_xref="TAIR:AT1G15870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TZG5" /translation="MAWLIRPTRKTISSPYLKALLLHQHLQPTSLFTTRNYISDMRKA AFQGNILRLLRNEIQYEHERCPPKQPITGFNSFIVDDRPGEQWIRLKRKFGEKEDIRI EATMFDGSIPVSDSERVGDNVQLHITFIVNISKGDDNNVLEIMCSAWPDAIVIKKLFV RGRNRTPAHPYIGPEFKELDDEMQDALYEFLEERGINDELAIFLHEYMKNKDKTEFIR WLGIVKSFIEKK" gene complement(3623705..3625004) /locus_tag="TCM_027404" /note="dbxref CacaoGD:Thecc1EG027404" mRNA complement(3623705..3625004) /locus_tag="TCM_027404" /product="Zinc finger protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s17900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036928t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s17900.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc2613t1" CDS complement(3624000..3624836) /locus_tag="TCM_027404" /note="paralog of Thecc1EG036928t1" /codon_start=1 /product="Zinc finger protein, putative" /protein_id="EOY26013.1" /db_xref="Phytozome:POPTR_0003s17900.1" /db_xref="TAIR:AT1G80730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SMU5" /translation="MEPLKSEPSLSETSSIISVSNGPAASLRTSMDSQKEGKQPEEED HEHQQDVNYDLVLDLSLSSKDDSNSNPELKPELNLIDCFKTDSSDDQDSLETPQGNET EPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGAASFAAFGHPNAHLSRY SSMASLPLHGSFNKSLGIQVHSMIHKPAFLPSAHIYGHNGWSRRPIDSKPAIGHLSME KFHVGINAGSSASNAAARFETSTRKLGPATEGMGGYWWVDSVNHFKTKQDELKLDLSL KL" mobile_element 3629194..3630133 /note="source:CACAO_Again_on_E73_scaffold_3 2 946" /mobile_element_type="transposon:TIR/hAT" mobile_element 3633014..3633073 /note="source:CACAO_M_E34409_F73_scaffold_5 2266 2320" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3633032..3633084 /note="source:scaffold_5_CACTA_0584 1922 1974" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3633043..3633098) /note="source:scaffold_5_CACTA_0584 1918 1974" /mobile_element_type="transposon:TIR/CACTA" gene 3639133..3644022 /locus_tag="TCM_027406" /note="dbxref CacaoGD:Thecc1EG027406" mRNA join(3639133..3639823,3640166..3640219,3643565..3644022) /locus_tag="TCM_027406" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017348t1" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS join(3639646..3639823,3640166..3640219,3643565..3643686) /locus_tag="TCM_027406" /note="paralog of Thecc1EG017348t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26014.1" /translation="MITYGGHWVNDTYKSGETRVMGVGSDLTFSSLMKLVKDVVGVNS QNHEIELHALLSHAAVARECSGSIAIHKRHYDGLSANVQLLNFARTITRLGLRWRVML FPFARLGILVSGKSP" mobile_element 3640287..3641493 /note="source:scaffold_6_CACTA_0709 4047 5288" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3641986..3643463) /note="source:CACAO_M_S_E14747_F17_scaffold_2 1 1505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3645100..3645294) /note="source:CACAO_on_E565_scaffold_5 954 1151" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(3646825..3647457) /locus_tag="TCM_027407" /note="dbxref CacaoGD:Thecc1EG027407" mRNA complement(3646825..3647457) /locus_tag="TCM_027407" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033004t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(3646857..3647162) /locus_tag="TCM_027407" /note="paralog of Thecc1EG033004t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26015.1" /translation="MLKNVAVTCLKWNRRIDIAKFIMDDMLRTIQRGIQNLFYGMLVS AIIDNFSVDTQCDPPKSHALFNPIDEHIVKKLGFKLKNDNWVRKGVLDLSVIDDEGG" gene complement(3669341..3674728) /locus_tag="TCM_027409" /note="dbxref CacaoGD:Thecc1EG027409" mRNA complement(join(3669341..3669630,3670087..3670200, 3671547..3671714,3672200..3672439,3674285..3674635)) /locus_tag="TCM_027409" /product="Golgi snare 11 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s14820.1" /inference="similar to AA sequence:ricco:29588.m000865" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06494t00001" mRNA complement(join(3669452..3669630,3670087..3670203, 3672200..3672439,3674285..3674728)) /locus_tag="TCM_027409" /product="Golgi SNARE 11 protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s14820.1" /inference="similar to AA sequence:ricco:29588.m000865" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc433t3; inference alignment:Newbler:10:TSA:cgbaP1_g06494t00001" CDS complement(join(3669517..3669630,3670087..3670203, 3672200..3672439,3674285..3674323)) /locus_tag="TCM_027409" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29588.m000865" /codon_start=1 /product="Golgi SNARE 11 protein isoform 2" /protein_id="EOY26017.1" /db_xref="TAIR:AT1G15880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVJ3" /translation="MDVPSSWDALRKQARKLEAQLDEQMNSYRKLVSTKVSTKVDSEE NDLESGIDRLLKQLQQVNMQMQDWVSSGGSEMVSHTLTRHQEILQDLTQQMDSVISHA QATLGALVLQRSTFGGINSKLSNVGSRLPTVNHILSAIKRKKSMDTIILSFVASVCTF LIFIYWLSK" CDS complement(join(3669517..3669630,3670087..3670200, 3671547..3671714,3672200..3672439,3674285..3674323)) /locus_tag="TCM_027409" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29588.m000865" /codon_start=1 /product="Golgi snare 11 isoform 1" /protein_id="EOY26016.1" /db_xref="TAIR:AT1G15880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVJ3" /translation="MDVPSSWDALRKQARKLEAQLDEQMNSYRKLVSTKVSTKVDSEE NDLESGIDRLLKQLQQVNMQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSL RAKQEHASLLEDFREFDRTRLDLEEGVGSTEQALLREHAAISRSTGQMDSVISHAQAT LGALVLQRSTFGGINSKLSNVGSRLPTVNHILSAIKRKKSMDTIILSFVASVCTFLIF IYWLSK" mobile_element complement(3674667..3675696) /note="source:CACAO_on_E683_scaffold_9 1202 2296" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(3676999..3688475) /locus_tag="TCM_027410" /note="dbxref CacaoGD:Thecc1EG027410" mRNA complement(join(3676999..3677337,3677813..3677851, 3678405..3678549,3679777..3679911,3679997..3680122, 3681575..3681679,3681825..3682025,3682564..3682672, 3682752..3682964,3683056..3683155,3683280..3683441, 3683786..3684125,3687145..3687345,3687434..3688475)) /locus_tag="TCM_027410" /product="Golgi organization, COG2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m014525" /inference="similar to AA sequence:ricco:30147.m014525" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1315t2" mRNA complement(join(3677232..3677475,3678405..3678549, 3679777..3679895,3682564..3682672,3682752..3682964, 3683056..3683155,3683280..3683441,3683786..3684125, 3687145..3687345,3687434..3688208)) /locus_tag="TCM_027410" /product="Golgi organization, COG2 isoform 4" /inference="alignment:exonerate- protein:2:ricco:30147.m014525" /inference="similar to AA sequence:ricco:30147.m014525" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc173t7_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1315t2" CDS complement(join(3678436..3678549,3679777..3679911, 3679997..3680122,3681575..3681679,3681825..3682025, 3682564..3682672,3682752..3682964,3683056..3683155, 3683280..3683441,3683786..3684125,3687145..3687345, 3687434..3687892)) /locus_tag="TCM_027410" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014525" /codon_start=1 /product="Golgi organization, COG2 isoform 1" /protein_id="EOY26018.1" /db_xref="TAIR:AT4G24840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASS9" /translation="MPDQISSPAPRSATDLFSDPLDSHPLWFKPSLFLSPNFDSESYI TELRTFVPFDTLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDSAVLRMRAP LLELRDKIQGFRGAVEGSLLALKDGLSQRAEATAAREVLELLLDTFHVVSKVEKLIKE LPSVASDWSNGDVNPVQKKNASGLQHVENGTTNLRETQSMLLERIASEMNRLNFYIAH AQNLPFIQNMEKRIRSASLLLDASLGHCFVDGLEHWDANAIYNCLRAYAAVDSTSNAE EIFRTTIVAPLIQKVIPHGSSGGLVSGASGDELENDYQQIKKYVENDCKLLLEISSAE NSGLHVFDFLANSILKEVLAAIQKGKPGAFSPGRPKEFLKNYKSSLDFLAYLEGYCPS RAAVAKFRAEPVYVEFMKQWKVGVYFSLRFQEIAGALDSALTASSLVLVQNYQSDENS QNLTLKQSVTLLESLRSCWSEEVLVLSCSDKFLRLSLQLLSRYSNWLSSGLAARKKGS AGANPGCEWALSAAPDDFVYIIHDINCLAKEISGAYLDHVLQVLSSCSTEVLDLVKQS ILYCGKSLDDLLPLVINTIMEALVQKSVEDLRQLKGITATYRMTNKPLPVRHSPYVAG VLRPLKTFLDGERATTYLTNAARNDLLLGAATEITGRYYELAADLVSVARKTESSLQR IRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRNLATLGVDAANITAYRSLW QCVAPADRQSVINF" mRNA complement(join(3679870..3679911,3679997..3680122, 3681575..3681679,3681825..3682025,3682605..3682672, 3682752..3682964,3683056..3683155,3683280..3683441, 3683786..3684125,3687145..3687345,3687434..3688208)) /locus_tag="TCM_027410" /product="Golgi organization, COG2 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30147.m014525" /inference="similar to AA sequence:ricco:30147.m014525" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc173t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1315t2" CDS complement(join(3679878..3679895,3682564..3682672, 3682752..3682964,3683056..3683155,3683280..3683441, 3683786..3684125,3687145..3687345,3687434..3687892)) /locus_tag="TCM_027410" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30147.m014525" /codon_start=1 /product="Golgi organization, COG2 isoform 4" /protein_id="EOY26021.1" /db_xref="TAIR:AT4G24840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASS9" /translation="MPDQISSPAPRSATDLFSDPLDSHPLWFKPSLFLSPNFDSESYI TELRTFVPFDTLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDSAVLRMRAP LLELRDKIQGFRGAVEGSLLALKDGLSQRAEATAAREVLELLLDTFHVVSKVEKLIKE LPSVASDWSNGDVNPVQKKNASGLQHVENGTTNLRETQSMLLERIASEMNRLNFYIAH AQNLPFIQNMEKRIRSASLLLDASLGHCFVDGLEHWDANAIYNCLRAYAAVDSTSNAE EIFRTTIVAPLIQKVIPHGSSGGLVSGASGDELENDYQQIKKYVENDCKLLLEISSAE NSGLHVFDFLANSILKEVLAAIQKGKPGAFSPGRPKEFLKNYKSSLDFLAYLEGYCPS RAAVAKFRAEPVYVEFMKQWKVGVYFSLRFQEIAGALDSALTASSLVLVQNYQSDENS QNLTLKQSVTLLESLRSCWSEEVLVLSCSDKFLRLSLQLLSRYSNWLSSGLAARKKGS AGANPGCEWALSAAPDDFVYLLFKE" mRNA complement(join(3679883..3679911,3679993..3680122, 3681575..3681679,3681825..3682025,3682564..3682672, 3682752..3682964,3683056..3683155,3683280..3683441, 3683786..3684125,3687145..3687345,3687434..3688191)) /locus_tag="TCM_027410" /product="Golgi organization, COG2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m014525" /inference="similar to AA sequence:ricco:30147.m014525" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc172t3_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1315t2" CDS complement(join(3679907..3679911,3679993..3680122, 3681575..3681679,3681825..3682025,3682564..3682672, 3682752..3682964,3683056..3683155,3683280..3683441, 3683786..3684125,3687145..3687345,3687434..3687892)) /locus_tag="TCM_027410" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014525" /codon_start=1 /product="Golgi organization, COG2 isoform 2" /protein_id="EOY26019.1" /db_xref="TAIR:AT4G24840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASS9" /translation="MPDQISSPAPRSATDLFSDPLDSHPLWFKPSLFLSPNFDSESYI TELRTFVPFDTLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDSAVLRMRAP LLELRDKIQGFRGAVEGSLLALKDGLSQRAEATAAREVLELLLDTFHVVSKVEKLIKE LPSVASDWSNGDVNPVQKKNASGLQHVENGTTNLRETQSMLLERIASEMNRLNFYIAH AQNLPFIQNMEKRIRSASLLLDASLGHCFVDGLEHWDANAIYNCLRAYAAVDSTSNAE EIFRTTIVAPLIQKVIPHGSSGGLVSGASGDELENDYQQIKKYVENDCKLLLEISSAE NSGLHVFDFLANSILKEVLAAIQKGKPGAFSPGRPKEFLKNYKSSLDFLAYLEGYCPS RAAVAKFRAEPVYVEFMKQWKVGVYFSLRFQEIAGALDSALTASSLVLVQNYQSDENS QNLTLKQSVTLLESLRSCWSEEVLVLSCSDKFLRLSLQLLSRYSNWLSSGLAARKKGS AGANPGCEWALSAAPDDFVYIIHDINCLAKEISGAYLDHVLQVLSSCSTEVLDLVKQS ILYCGKSLDDLLPLVINTIMEALVQKSVEDLRQLKGITATYRMTNKPLPVRHSPYVAG VLRPLKTFLDGERATTYLTNAARNDLLLGAATEITGRYYELAADLVSVVG" CDS complement(join(3682015..3682025,3682605..3682672, 3682752..3682964,3683056..3683155,3683280..3683441, 3683786..3684125,3687145..3687345,3687434..3687892)) /locus_tag="TCM_027410" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30147.m014525" /codon_start=1 /product="Golgi organization, COG2 isoform 3" /protein_id="EOY26020.1" /db_xref="TAIR:AT4G24840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASS9" /translation="MPDQISSPAPRSATDLFSDPLDSHPLWFKPSLFLSPNFDSESYI TELRTFVPFDTLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDSAVLRMRAP LLELRDKIQGFRGAVEGSLLALKDGLSQRAEATAAREVLELLLDTFHVVSKVEKLIKE LPSVASDWSNGDVNPVQKKNASGLQHVENGTTNLRETQSMLLERIASEMNRLNFYIAH AQNLPFIQNMEKRIRSASLLLDASLGHCFVDGLEHWDANAIYNCLRAYAAVDSTSNAE EIFRTTIVAPLIQKVIPHGSSGGLVSGASGDELENDYQQIKKYVENDCKLLLEISSAE NSGLHVFDFLANSILKEVLAAIQKGKPGAFSPGRPKEFLKNYKSSLDFLAYLEGYCPS RAAVAKFRAEPVYVEFMKQWKVGVYFSLRFQEIAGALDSALTASSLVLVQNYQSDENS QNLTLKQSVTLLESLRSCWSEEVLVLSCSDKFLRLSLQLLSRYSNWLSSGLAARKKGS AGANPGYYS" mobile_element complement(3684840..3684896) /note="source:scaffold_1_CACTA_0011 10446 10502" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3693253..3693844 /note="source:scaffold_2_CACTA_0262 3831 4451" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3695723..3696548) /note="source:CACAO_M_E14847_F106_scaffold_3 1164 2000" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3696549..3698390) /note="source:scaffold_2_CACTA_0276 8458 10312" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3698347..3698738) /note="source:CACAO_M_E57142_F60_scaffold_8 488 909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3699443..3702383) /note="source:CACAO_M_E11656_F17_scaffold_2 5894 8834" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3703580..3705844 /locus_tag="TCM_027411" /note="dbxref CacaoGD:Thecc1EG027411" mRNA join(3703580..3704176,3705819..3705844) /locus_tag="TCM_027411" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29588.m000861" /inference="similar to AA sequence:Phytozome:POPTR_0001s14840.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12347t00001" CDS 3703687..3704055 /locus_tag="TCM_027411" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26022.1" /db_xref="Phytozome:POPTR_0001s14840.1" /db_xref="TAIR:AT1G15900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7KDL1" /translation="MEDESSTSNNDDDKDPWLAPDKLYHFLFCFFLTFLFSTLASLSR YSFLRNHSIRVGSILSLAAGAAKEAADQLGLFPSAGASSRDAVADLLGVLVAAMVLSL RKRLLRFGSDSGHSRRVLPV" gene complement(3705615..3708757) /locus_tag="TCM_027412" /note="dbxref CacaoGD:Thecc1EG027412" mRNA complement(join(3705615..3706032,3707111..3707172, 3707694..3707888,3707978..3708202,3708407..3708757)) /locus_tag="TCM_027412" /product="Aquaporin NIP6,1" /inference="alignment:exonerate- protein:2:ricco:29588.m000860" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015559t1" /inference="similar to AA sequence:ricco:29588.m000860" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc681t3" CDS complement(join(3705837..3706032,3707111..3707172, 3707694..3707888,3707978..3708202,3708407..3708634)) /locus_tag="TCM_027412" /note="dbxref ricco:29588.m000860; paralog of Thecc1EG015559t1" /codon_start=1 /product="Aquaporin NIP6,1" /protein_id="EOY26023.1" /db_xref="TAIR:AT1G80760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8FSL4" /translation="MENEDAPSAPSTPATPGTPGAPLFGGFRGDQKGGISRKSLLKSC RCFSVEEWSMEEGRLPPVSCSLPPPPVSLTRKVGAEFIGTLILIFAGTATAIVNQKTQ GSETLIGLAASTGLAVMIVILSTGHISGAHLNPAITISFAALKHFPWKHVPVYIGAQV MASLCAAFALKGVFHPFLGGGVTVPSGGFGQAFALEFVISFNLMFVVTAVATDTRAVG ELAGIAVGATVMLNILIAGPFTGASMNPVRTLGPAIAANNYKAIWVYFTAPILGALCG AGTYTAVKLPEEDGEKPLTVRSFRR" mobile_element complement(3709771..3709831) /note="source:scaffold_5_CACTA_0596 1800 1860" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3710110..3710128) /note="source:INTACT296_F13_scaffold_9-int 13210 13249" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3710129..3710187 /note="source:CACAO_PIF_E144_scaffold_10 5997 6055" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3710153..3710240) /note="source:scaffold_6_CACTA_0712 1373 1463" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3710241..3710253) /note="source:INTACT296_F13_scaffold_9-int 13178 13209" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3711542..3712684) /note="source:INTACT639F_F363_scaffold_5-int 7467 8577" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3713647..3713830 /note="source:scaffold_9_CACTA_0946 17761 17957" /mobile_element_type="transposon:TIR/CACTA" gene 3716584..3722364 /locus_tag="TCM_027414" /note="dbxref CacaoGD:Thecc1EG027414" mRNA join(3716584..3716960,3718078..3718987,3719503..3719684, 3720111..3720200,3720299..3720583,3720697..3720909, 3721376..3721613,3721999..3722364) /locus_tag="TCM_027414" /product="XH/XS domain-containing protein" /inference="alignment:exonerate- protein:2:ricco:29588.m000859" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042747t1" /inference="similar to AA sequence:ricco:29588.m000859" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04544t00001" CDS join(3718087..3718987,3719503..3719684,3720111..3720200, 3720299..3720583,3720697..3720909,3721376..3721606) /locus_tag="TCM_027414" /note="dbxref ricco:29588.m000859; paralog of Thecc1EG042747t1" /codon_start=1 /product="XH/XS domain-containing protein" /protein_id="EOY26024.1" /db_xref="TAIR:AT1G15910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SMT8" /translation="MDSSSGEESDLSESEINDYIEKPYEQLKSGKYQVKALNGSLRCP FCAGKKKQDYKYKDLLQHASGVGKGSANRSAIQKANHLALAKYLEIDLASEADQTLRP AVPRPVNQTPEQNDLYVWPWMGIILNIVAESKDKNALHDQGYWLKKFAKYKPLEVQSF WNEQDLTGQAILKFNNDWNGFMNATEFEKVFVTELRSKKHWNEKQTHLGSNIYGWCAR ADDYQSDGPIGEYLRKVGKLRTISDIVQEAAQDRNNVVANLATRIDLTNENLEELQYK YNETTMSLSRMLEEKDKLHLAFIEETRKMQRLARDNVRRILEEQEKLNYELETKKRKI DYWNKELNKREALTERERQKLDEDKKKNNERNNSLLLASMEQKKADENVLRLVEEQKR EKEEALKKILQLEKQLDVKQKLEMEIEELKGKLQVMKHLGQDDAVVQKKMEEMNNELK EKIEDLQDMESTNQALIVKERQSNDELQEARKVLIQGLRELLGARVNIGLKRMGELDE KAFQNTCKLRFSPDEAAVQATTLCSLWEENLKNPEWHPFKIINEGGNHKEIVNEEDEK LRNLKQEWGEGIYEAVVTAFKELNEYNPSGRYVISELWNFKENRKATLKEVINYIVKN IKTAKRKRT" mobile_element complement(3723807..3723861) /note="source:CACAO_on_SS_E42_scaffold_2 23076 23131" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3723813..3723913) /note="source:CACAO_hAT_E2862_scaffold_6 2753 2869" /mobile_element_type="transposon:TIR/hAT" gene complement(3724157..3739635) /locus_tag="TCM_027415" /note="dbxref CacaoGD:Thecc1EG027415" mRNA complement(join(3724157..3725051,3725108..3725252, 3725395..3725579)) /locus_tag="TCM_027415" /product="Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034221001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027417t1" /inference="similar to AA sequence:ricco:29588.m000858" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00242t00003; inference alignment:Newbler:10:TSA:cgbaB_g02243t00001" mRNA complement(join(3724158..3725252,3725395..3725616)) /locus_tag="TCM_027415" /product="Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034221001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027417t1" /inference="similar to AA sequence:ricco:29588.m000858" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02243t00001; inference alignment:Newbler:10:TSA:cgbaB_g02243t00001" CDS complement(3724291..3725115) /locus_tag="TCM_027415" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29588.m000858; paralog of Thecc1EG027417t1" /codon_start=1 /product="Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1" /protein_id="EOY26025.1" /db_xref="TAIR:AT2G32070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVJ6" /translation="MSLLPKSDSIQIREVWNDNLEEEFALIREIVDDYPYVAMDTEFP GVVLRPLGNFKYICDYNYQTLKDNVDMLKLIQLGLTFSDEEGNLPTCGTDKYCIWQFN FREFNVNEDVFANDSIELLRQSGIDFKKNNEKGIDAMRFGELLMSSGIVLNDSVHWVT FHSGYDFGYLLKLLTCQNLPDTQVGFFSLINIYFPTLYDIKHLMKFCNSLYGGLNKLA ELLEVERVGICHQAGSDSLLTSCTFMKLKENFFSGSLEKYSGVLYGLGVENGQSTH" CDS complement(3724291..3725001) /locus_tag="TCM_027415" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29588.m000858; paralog of Thecc1EG027417t1" /codon_start=1 /product="Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2" /protein_id="EOY26026.1" /db_xref="TAIR:AT2G32070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVJ6" /translation="MDTEFPGVVLRPLGNFKYICDYNYQTLKDNVDMLKLIQLGLTFS DEEGNLPTCGTDKYCIWQFNFREFNVNEDVFANDSIELLRQSGIDFKKNNEKGIDAMR FGELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCQNLPDTQVGFFSLINIYFPTLY DIKHLMKFCNSLYGGLNKLAELLEVERVGICHQAGSDSLLTSCTFMKLKENFFSGSLE KYSGVLYGLGVENGQSTH" mRNA complement(join(<3724532..3725220,3739342..3739374, 3739517..3739635)) /locus_tag="TCM_027415" /product="Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034221001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027417t1" /inference="similar to AA sequence:ricco:29588.m000858" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is weak, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc562t4; inference alignment:Newbler:10:TSA:cgbaB_g02243t00001" CDS complement(<3724534..3725115) /locus_tag="TCM_027415" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29588.m000858; paralog of Thecc1EG027417t1" /codon_start=1 /product="Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 3" /protein_id="EOY26027.1" /db_xref="TAIR:AT2G32070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVJ6" /translation="MSLLPKSDSIQIREVWNDNLEEEFALIREIVDDYPYVAMDTEFP GVVLRPLGNFKYICDYNYQTLKDNVDMLKLIQLGLTFSDEEGNLPTCGTDKYCIWQFN FREFNVNEDVFANDSIELLRQSGIDFKKNNEKGIDAMRFGELLMSSGIVLNDSVHWVT FHSGYDFGYLLKLLTCQNLPDTQVGFFSLINIYF" gene complement(3725230..>3733409) /locus_tag="TCM_027416" /note="dbxref CacaoGD:Thecc1EG027416" mobile_element 3726510..3726672 /note="source:scaffold_9_CACTA_0942 5217 5382" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3727786..3727845) /note="source:CACAO_hAT_E664_scaffold_2 1872 1928" /mobile_element_type="transposon:TIR/hAT" mobile_element 3728446..3728559 /note="source:CACAO_PIF_E119_scaffold_3 1752 1872" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(3728866..3733475) /locus_tag="TCM_027417" /note="dbxref CacaoGD:Thecc1EG027417" mRNA complement(join(3728866..3729125,3730728..3730838, 3732095..3733046,3733189..3733475)) /locus_tag="TCM_027417" /product="CCR4-associated factor 1" /inference="alignment:exonerate- protein:2:ricco:29588.m000858.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027415t1" /inference="similar to AA sequence:ricco:29588.m000858" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02243t00002" CDS complement(join(3728980..3729125,3730728..3730838, 3732095..3732908)) /locus_tag="TCM_027417" /note="dbxref ricco:29588.m000858; paralog of Thecc1EG027415t1" /codon_start=1 /product="CCR4-associated factor 1" /protein_id="EOY26029.1" /db_xref="TAIR:AT1G80780.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVJ6" /translation="MSLLPKGDSIQIREVWNDNLEEEFALIREIVDDYPYVAMDTEFP GVVLRPLGNFKNSYDYHYQTLKDNVDMLKLIQLGLTFSDEEGNLPTCATDKYCIWQFN FREFNVNEDVFANDSIELLRQSGIDFKKNNEKGIDAMRFGELLMSSGIVLNDSVHWVT FHSGYDFGYLLKLLTCQNLPDTQAGFFSLINIYFPTLYDIKHLMKFSNSLYGGLNKLA ELLEVERVGICHQAGSDSLLTSCTFRKLKENFFSGSLEKYSGVLYGLGVENGQKDDRM RNIVVNKHGLFTKPFLPVAMNLCICILSSNKEGRESHGAEGASVGFGSEQCSETNLAK IMWEQLESTDPRIGTLTEIDHT" mRNA complement(join(3733019..3733046,3733189..>3733390)) /locus_tag="TCM_027416" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is none, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc569t6_C2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2755t1" CDS complement(3733190..>3733390) /locus_tag="TCM_027416" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY26028.1" /translation="AVTTTSQRPVLKKKEKPILGPPIILQTGNPTERKEVPFRNFLDL SLSRICLVYLFLSKKPSIFPLL" mobile_element complement(3735412..3735531) /note="source:scaffold_5_CACTA_0584 1912 1962" /mobile_element_type="transposon:TIR/CACTA" gene complement(3738198..3739654) /locus_tag="TCM_027418" /note="dbxref CacaoGD:Thecc1EG027418" mRNA complement(join(3738198..3739374,3739517..3739631)) /locus_tag="TCM_027418" /product="Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g035960.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027417t1" /inference="similar to AA sequence:ricco:29588.m000858" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1734t3; alternateUTRof:Thecc1EG027418t1; inference alignment:Newbler:10:TSA:cgbaB_g10645t00001" mRNA complement(join(3738377..3739374,3739517..3739654)) /locus_tag="TCM_027418" /product="Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g035960.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027417t1" /inference="similar to AA sequence:ricco:29588.m000858" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10645t00001" CDS complement(3738408..3739232) /locus_tag="TCM_027418" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29588.m000858; paralog of Thecc1EG027417t1" /codon_start=1 /product="Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1" /protein_id="EOY26030.1" /db_xref="TAIR:AT1G80780.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVJ6" /translation="MSLLPKSDSIQIREVWNDNLEEEFALIREIVDDYPFVAMDTEFP GIVLRPVGNFKNSYDFHYQTLKDNVDMLKLIQLGLTLSDDQGNLPTCGTDKYCIWQFN FCEFNVNEDVFANDSIELLRQSGIDFKKNNEKGIDAMRFGELLMSSGIVLNDSVHWVT FHSGYDFGYLLKLLTCQNLPDTQVEFFSLINIYFPTLYDIKHLMKFCNSLHGGLNKLA ELLEVERVGICHQAGSDSLLTSCTFRKLKENFFSGSLEKYSGVLYGLGIENGQSTY" CDS complement(3738408..3739232) /locus_tag="TCM_027418" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29588.m000858; paralog of Thecc1EG027417t1" /codon_start=1 /product="Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1" /protein_id="EOY26031.1" /db_xref="TAIR:AT1G80780.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVJ6" /translation="MSLLPKSDSIQIREVWNDNLEEEFALIREIVDDYPFVAMDTEFP GIVLRPVGNFKNSYDFHYQTLKDNVDMLKLIQLGLTLSDDQGNLPTCGTDKYCIWQFN FCEFNVNEDVFANDSIELLRQSGIDFKKNNEKGIDAMRFGELLMSSGIVLNDSVHWVT FHSGYDFGYLLKLLTCQNLPDTQVEFFSLINIYFPTLYDIKHLMKFCNSLHGGLNKLA ELLEVERVGICHQAGSDSLLTSCTFRKLKENFFSGSLEKYSGVLYGLGIENGQSTY" mobile_element complement(3740491..3740916) /note="source:scaffold_2_CACTA_0281 6168 6612" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3740524..3741080 /note="source:scaffold_9_CACTA_0943 3173 3751" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3740584..3741101 /note="source:CACAO_Again_on_E210_scaffold_9 905 1421" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(3740711..3741236) /note="source:CACAO_MITE_S250_scaffold_10 1 517" /mobile_element_type="transposon:TIR/MITE" gene 3741210..3744567 /locus_tag="TCM_027419" /note="dbxref CacaoGD:Thecc1EG027419" mRNA join(3741210..3741476,3741702..3741740,3742691..3742970, 3743586..3743651,3743751..3743826,3744506..3744567) /locus_tag="TCM_027419" /product="40S ribosomal protein S12 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29634.m002153.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037080t1" /inference="similar to AA sequence:Phytozome:POPTR_0002s05710.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g11165t00001" mRNA join(3741222..3741476,3741674..3741740,3742691..3742970, 3743586..>3743614) /locus_tag="TCM_027419" /product="40S ribosomal protein S12 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g23260.2.2" /inference="alignment:exonerate- protein:2:ricco:29634.m002153.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037080t1" /inference="similar to AA sequence:Phytozome:POPTR_0002s05710.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc754t3; inference alignment:Newbler:10:TSA:cgbaP1_g11165t00001" gene 3741261..3753396 /locus_tag="TCM_027420" /note="dbxref CacaoGD:Thecc1EG027420" mRNA join(3741261..3741476,3741674..3741740,3742691..3742970, 3743586..3743651,3743751..3744095,3744191..3744214, 3744453..3744971,3744985..3745094,3745906..3746109, 3746276..3746457,3748381..3748507,3748594..3748776, 3749180..3749440,3749606..3750097,3750201..3750305, 3750576..3750649,3751276..3751327,3751740..3751811, 3751923..3751966,3752261..3752332,3752413..>3752683) /locus_tag="TCM_027420" /product="Chloroplast-like protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene15847" /inference="similar to AA sequence:Phytozome:POPTR_0003s17970.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is strong, protein is partial3; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01514t00001; inference alignment:Newbler:10:TSA:cgbaB_g01514t00002; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc152t2" mRNA join(3741261..3741476,3741702..3741740,3742691..3742970, 3743586..3743651,3743751..3744095,3744191..3744214, 3744453..3744971,3744985..3745094,3745906..3746109, 3746276..3746457,3748381..3748507,3748594..3748776, 3749180..3749440,3749606..3750097,3750201..3750305, 3750576..3750649,3751276..3751327,3751740..3751811, 3751923..3751966,3752261..3752332,3752413..>3752683) /locus_tag="TCM_027420" /product="Chloroplast-like protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene15847" /inference="similar to AA sequence:Phytozome:POPTR_0003s17970.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is strong, protein is partial3; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01514t00002; alternateUTRof:Thecc1EG027420t2; inference alignment:Newbler:10:TSA:cgbaB_g01514t00002; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc152t2" CDS join(3741733..3741740,3742691..3742970,3743586..3743651, 3743751..3743813) /locus_tag="TCM_027419" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037080t1" /codon_start=1 /product="40S ribosomal protein S12 isoform 1" /protein_id="EOY26032.1" /db_xref="Phytozome:POPTR_0002s05710.1" /db_xref="TAIR:AT2G32060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U865" /translation="MSGEEAVATVAPIEAPEMDLTTAIQVVLRKSLAHGGLARGLHEG AKVIEKHAALLCLLAEDCDQPDYVKLVKALCSDHQTDLLPIPSAKVLGEWAGLCKIDS EGKARKVVGCSCVVVKDFGEDSTALTFLQDHIKSQG" CDS join(3741733..3741740,3742691..3742970,3743586..>3743612) /locus_tag="TCM_027419" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037080t1" /codon_start=1 /product="40S ribosomal protein S12 isoform 2" /protein_id="EOY26033.1" /db_xref="Phytozome:POPTR_0002s05710.1" /db_xref="TAIR:AT2G32060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U865" /translation="MSGEEAVATVAPIEAPEMDLTTAIQVVLRKSLAHGGLARGLHEG AKVIEKHAALLCLLAEDCDQPDYVKLVKALCSDHQTDLLPIPSAKVLGEWAGLCKIDS EGK" mRNA join(3744438..3745094,3745906..3746109,3746276..3746457, 3748381..3748507,3748594..3748776,3749180..3750097, 3750201..3750305,3750576..3750649,3751276..3751327, 3751740..3751811,3751923..3751966,3752261..3752332, 3752413..3753388) /locus_tag="TCM_027420" /product="Chloroplast-like protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene15847" /inference="similar to AA sequence:Phytozome:POPTR_0003s17970.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc152t2" mRNA join(3744587..3745094,3745658..3745696,3745906..3746109, 3746276..3746457,3748381..3748507,3748594..3748776, 3749180..3750097,3750201..3750305,3750576..3750649, 3751276..3751327,3751740..3751811,3751923..3751966, 3752261..3752333,3752413..3753396) /locus_tag="TCM_027420" /product="Tudor/PWWP/MBT superfamily protein isoform 4" /inference="alignment:exonerate-protein:2:frave:gene15847" /inference="similar to AA sequence:Phytozome:POPTR_0003s17970.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc147t3; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc152t2; inference alignment:Newbler:10:TSA:cgbaB_g01514t00002" CDS join(3744987..3745094,3745906..3746109,3746276..3746457, 3748381..3748507,3748594..3748776,3749180..3750097, 3750201..3750305,3750576..3750649,3751276..3751327, 3751740..3751811,3751923..3751966,3752261..3752332, 3752413..3752731) /locus_tag="TCM_027420" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Chloroplast-like protein isoform 1" /protein_id="EOY26034.1" /db_xref="Phytozome:POPTR_0003s17970.1" /db_xref="TAIR:AT4G31880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVJ8" /translation="MISFERKMELEGQLKEAGNNLLNPPSSIDELLFLLDKVENLLIS VEQAPPRSMQKALLPLMKALISDALLRHSDMDVKVSVASCITEITRITAPDAPYNDER MKEIFQLTVAAFENLSHVSSRCYTKAVSILDTVARVRLCLLMLDLDCDELIIEMFQQF LKKIRSNHPNTVFLAMESIMTLVLDESEDISWGLLSPLLASVRKENQKILPTSWKLGE NVIANCAYKIKPYLMEAVQSMDIALDEYSPIIASICKSESDALNKSGDHLVTVGPVFR GELCQAVDAISKSLMRNVTAGTRENNRINNGILNIKPSKILEHSHVEVPRGADAPGGA GPDNFVSLYPVKSETEPDTMPKKRGRRHNSLMNAKEDHDHSWICMARNPLQIPHHRKR HDKGVDCSVVADPDLKDAAPQLKDEKVTESEMSCQINEIIGASSASPNGGLPGGRHRR RGQSKGKESMTTENADPNSSLANRLEFKTQIVDKLTRPTDASLKMKSEDKTSERKRPK RSRRVEIDAKPIQAPPYFVPEKEARVRSDLEEKKLLQATLKKYINKRTLDDDAMLDES ITGASGNQKMNSRPVTTARKGGAYLEKTPKTNPKGQRNAGKEMASELPDLGEELIGRR IKVWWPMDKTFYEGVVASYDSITMKHRVLYEDGDEERLNLRRQRWQLIHDKGQEIDLP KPDVSLDILPKLKGKTHSSSPKSAKRRSSFKRNGVHASTATRKSKSYGGISPDGGMLE KPSVHESVKDASTTMTDSRSSGDGQKFADELKAESNSMESKPTIAEMLPSSDGTSLKD GESLSAMPCDIRGNQEKETSL" CDS join(3744987..3745094,3745906..3746109,3746276..3746457, 3748381..3748507,3748594..3748776,3749180..3749440, 3749606..3750097,3750201..3750305,3750576..3750649, 3751276..3751327,3751740..3751811,3751923..3751966, 3752261..3752332,3752413..>3752683) /locus_tag="TCM_027420" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Chloroplast-like protein isoform 2" /protein_id="EOY26035.1" /db_xref="Phytozome:POPTR_0003s17970.1" /db_xref="TAIR:AT4G31880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVJ8" /translation="MISFERKMELEGQLKEAGNNLLNPPSSIDELLFLLDKVENLLIS VEQAPPRSMQKALLPLMKALISDALLRHSDMDVKVSVASCITEITRITAPDAPYNDER MKEIFQLTVAAFENLSHVSSRCYTKAVSILDTVARVRLCLLMLDLDCDELIIEMFQQF LKKIRSNHPNTVFLAMESIMTLVLDESEDISWGLLSPLLASVRKENQKILPTSWKLGE NVIANCAYKIKPYLMEAVQSMDIALDEYSPIIASICKSESDALNKSGDHLVTVGPVFR GELCQAVDAISKSLMRNVTAGTRENNRINNGILNIKPSKILEHSHVEVPRGADAPGGA GPDNFVSLYPVKSETEPDTMPAPQLKDEKVTESEMSCQINEIIGASSASPNGGLPGGR HRRRGQSKGKESMTTENADPNSSLANRLEFKTQIVDKLTRPTDASLKMKSEDKTSERK RPKRSRRVEIDAKPIQAPPYFVPEKEARVRSDLEEKKLLQATLKKYINKRTLDDDAML DESITGASGNQKMNSRPVTTARKGGAYLEKTPKTNPKGQRNAGKEMASELPDLGEELI GRRIKVWWPMDKTFYEGVVASYDSITMKHRVLYEDGDEERLNLRRQRWQLIHDKGQEI DLPKPDVSLDILPKLKGKTHSSSPKSAKRRSSFKRNGVHASTATRKSKSYGGISPDGG MLEKPSVHESVKDASTTMTDSRSSGDGQKFADELKAESNSMESKPTIAEMLPSSDGTS LKDGESLSA" CDS join(3744987..3745094,3745906..3746109,3746276..3746457, 3748381..3748507,3748594..3748776,3749180..3749440, 3749606..3750097,3750201..3750305,3750576..3750649, 3751276..3751327,3751740..3751811,3751923..3751966, 3752261..3752332,3752413..>3752683) /locus_tag="TCM_027420" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Chloroplast-like protein isoform 2" /protein_id="EOY26036.1" /db_xref="Phytozome:POPTR_0003s17970.1" /db_xref="TAIR:AT4G31880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVJ8" /translation="MISFERKMELEGQLKEAGNNLLNPPSSIDELLFLLDKVENLLIS VEQAPPRSMQKALLPLMKALISDALLRHSDMDVKVSVASCITEITRITAPDAPYNDER MKEIFQLTVAAFENLSHVSSRCYTKAVSILDTVARVRLCLLMLDLDCDELIIEMFQQF LKKIRSNHPNTVFLAMESIMTLVLDESEDISWGLLSPLLASVRKENQKILPTSWKLGE NVIANCAYKIKPYLMEAVQSMDIALDEYSPIIASICKSESDALNKSGDHLVTVGPVFR GELCQAVDAISKSLMRNVTAGTRENNRINNGILNIKPSKILEHSHVEVPRGADAPGGA GPDNFVSLYPVKSETEPDTMPAPQLKDEKVTESEMSCQINEIIGASSASPNGGLPGGR HRRRGQSKGKESMTTENADPNSSLANRLEFKTQIVDKLTRPTDASLKMKSEDKTSERK RPKRSRRVEIDAKPIQAPPYFVPEKEARVRSDLEEKKLLQATLKKYINKRTLDDDAML DESITGASGNQKMNSRPVTTARKGGAYLEKTPKTNPKGQRNAGKEMASELPDLGEELI GRRIKVWWPMDKTFYEGVVASYDSITMKHRVLYEDGDEERLNLRRQRWQLIHDKGQEI DLPKPDVSLDILPKLKGKTHSSSPKSAKRRSSFKRNGVHASTATRKSKSYGGISPDGG MLEKPSVHESVKDASTTMTDSRSSGDGQKFADELKAESNSMESKPTIAEMLPSSDGTS LKDGESLSA" CDS join(3744987..3745094,3745658..3745696,3745906..3746109, 3746276..3746457,3748381..3748507,3748594..3748776, 3749180..3750097,3750201..3750305,3750576..3750649, 3751276..3751327,3751740..3751811,3751923..3751966, 3752261..3752333,3752413..3752451) /locus_tag="TCM_027420" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Tudor/PWWP/MBT superfamily protein isoform 4" /protein_id="EOY26037.1" /db_xref="Phytozome:POPTR_0003s17970.1" /db_xref="TAIR:AT1G80810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVJ8" /translation="MISFERKMELEGQLKEAGNNLLNPPSSIDELLFLLDNPSRLIFR FMVWKKVENLLISVEQAPPRSMQKALLPLMKALISDALLRHSDMDVKVSVASCITEIT RITAPDAPYNDERMKEIFQLTVAAFENLSHVSSRCYTKAVSILDTVARVRLCLLMLDL DCDELIIEMFQQFLKKIRSNHPNTVFLAMESIMTLVLDESEDISWGLLSPLLASVRKE NQKILPTSWKLGENVIANCAYKIKPYLMEAVQSMDIALDEYSPIIASICKSESDALNK SGDHLVTVGPVFRGELCQAVDAISKSLMRNVTAGTRENNRINNGILNIKPSKILEHSH VEVPRGADAPGGAGPDNFVSLYPVKSETEPDTMPKKRGRRHNSLMNAKEDHDHSWICM ARNPLQIPHHRKRHDKGVDCSVVADPDLKDAAPQLKDEKVTESEMSCQINEIIGASSA SPNGGLPGGRHRRRGQSKGKESMTTENADPNSSLANRLEFKTQIVDKLTRPTDASLKM KSEDKTSERKRPKRSRRVEIDAKPIQAPPYFVPEKEARVRSDLEEKKLLQATLKKYIN KRTLDDDAMLDESITGASGNQKMNSRPVTTARKGGAYLEKTPKTNPKGQRNAGKEMAS ELPDLGEELIGRRIKVWWPMDKTFYEGVVASYDSITMKHRVLYEDGDEERLNLRRQRW QLIHDKGQEIDLPKPDVSLDILPKLKGKTHSSSPKSAKRRSSFKREWCSCKHSNTKI" mobile_element 3757148..3757286 /note="source:scaffold_7_CACTA_0795 2887 3027" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3759591..3760817) /note="source:INTACT405F_F91_scaffold_4-int 16883 18092" /mobile_element_type="retrotransposon:LTR/Copia" gene 3764186..3769129 /locus_tag="TCM_027422" /note="dbxref CacaoGD:Thecc1EG027422" mRNA join(3764186..3764671,3764775..3764929,3765629..3765814, 3766446..3766798,3768607..3769129) /locus_tag="TCM_027422" /product="Cinnamoyl coa reductase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034241001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042206t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034241001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03912t00001" mRNA join(<3764262..3764609,3764820..3764929,3765629..3765814, 3766446..>3766793) /locus_tag="TCM_027422" /product="Cinnamoyl coa reductase 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034241001" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400049658" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc140t4; inference alignment:Newbler:10:TSA:cgbaP1_g03912t00001" CDS join(<3764264..3764609,3764820..3764929,3765629..3765814, 3766446..>3766793) /locus_tag="TCM_027422" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cinnamoyl coa reductase 1 isoform 2" /protein_id="EOY26039.1" /db_xref="Phytozome:PGSC0003DMP400049658" /db_xref="TAIR:AT1G15950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FPM0" /translation="KNKKNINNKPRHVKSLPLFFDFLYKQTKKERKMVSHCVPSPLIF NSPVVGKHGKHGFCPINTLPSLQIQNKAPNRKKEGHVHKSFHIKPNQICQLTALPLLA KPSVSPVLVASSLQRLTLHKADLLDYESLKDAINGCDGVFHTASPVTDDPEQMVEPAV IGTKNVIMAAAEAKVRRVVFTSSIGAVYMDPSRSPDVVVDESCWSDLEFCKNTKNWYC YGKAVAEQAAWETAKEKGVDLVVITPVLVLGPLLQSTVNASIIHILKYLTGSAKTYAN SVQAYVHVRDVALAHIMVFENPSASGRYLCAESVLHRGEVVEILAKFFPEYPIP" CDS join(3764539..3764671,3764775..3764929,3765629..3765814, 3766446..3766798,3768607..3768790) /locus_tag="TCM_027422" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042206t1" /codon_start=1 /product="Cinnamoyl coa reductase 1 isoform 1" /protein_id="EOY26038.1" /db_xref="Phytozome:GSVIVT01034241001" /db_xref="TAIR:AT1G15950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FPM0" /translation="MPVDSSSPSSQTVCVTGAGGFIASWIVKLLLEKGYTVKGTVRNP DDPKNAHLRELEGAKERLTLHKADLLDYESLKDAINGCDGVFHTASPVTDDPEQMVEP AVIGTKNVIMAAAEAKVRRVVFTSSIGAVYMDPSRSPDVVVDESCWSDLEFCKNTKNW YCYGKAVAEQAAWETAKEKGVDLVVITPVLVLGPLLQSTVNASIIHILKYLTGSAKTY ANSVQAYVHVRDVALAHIMVFENPSASGRYLCAESVLHRGEVVEILAKFFPEYPIPTK CSDEKNPRAKPYEFSNRKLKDLGLEFTPVKQCLYETVKSLQEKGHLPIPAQQDDSLRI HS" gene complement(3770735..3771339) /locus_tag="TCM_027423" /note="dbxref CacaoGD:Thecc1EG027423" mRNA complement(3770735..3771339) /locus_tag="TCM_027423" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS complement(3770757..3770981) /locus_tag="TCM_027423" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26040.1" /translation="MRGIFVLSPSMKIKAVTDRLFDRFGGGRSPPRGSTLSVDEANRH DRRLLLQSSVVADGGCRLLDCNRPLRTPNK" mobile_element 3771456..3771694 /note="source:INTACT105_F2_scaffold_2-int 532 787" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3773055..3784471) /locus_tag="TCM_027424" /note="dbxref CacaoGD:Thecc1EG027424" mRNA complement(join(3773055..3773746,3773988..3774083, 3774868..3774999,3775530..3775634,3775798..3775971, 3776676..3776745,3776832..3777013,3777184..3777293, 3777741..3777845,3777928..3778006,3778429..3778469, 3778562..3778640,3780698..3780832,3781348..3781790, 3784421..3784471)) /locus_tag="TCM_027424" /product="NRAMP metal ion transporter 6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035174t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s03650.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc663t6" mRNA complement(join(3773055..3773746,3773988..3774083, 3774868..3774999,3775530..3775634,3775798..3775971, 3776676..3776745,3776832..3777013,3777184..3777293, 3777741..3777845,3777928..3778006,3778429..3778469, 3778562..3778640,3780698..3780837,3781348..3781790, 3784421..3784471)) /locus_tag="TCM_027424" /product="NRAMP metal ion transporter 6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035174t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s03650.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:PASA:2:TSA:puevd3b026526t1a2; alternateUTRof:Thecc1EG027424t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc663t6" mobile_element 3773263..3773335 /note="source:scaffold_1_CACTA_0024 6400 6469" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(3773402..3773746,3773988..3774083, 3774868..3774999,3775530..3775634,3775798..3775971, 3776676..3776745,3776832..3777013,3777184..3777293, 3777741..3777845,3777928..3778006,3778429..3778469, 3778562..3778640,3780698..3780811)) /locus_tag="TCM_027424" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG035174t1" /codon_start=1 /product="NRAMP metal ion transporter 6 isoform 1" /protein_id="EOY26041.1" /db_xref="Phytozome:POPTR_0001s03650.1" /db_xref="TAIR:AT1G15960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SAH8" /translation="MAGSNSRQPQFIASTGNQSFSNAPLIQSADTDQIVVPERKSWKN LFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALVIQSLAANLGV VTGKHLAEHCRAEYPRGPNFILWVLAEIAVVACDIPEVIGTAFALNMLFNIPVWIGVL LTGLSTLVLLALQQYGVRKLEIFISFLVLTIAGCFLAELGYAKPVAGEVLKGLFVPQL KGNGATGLAISLLGAMVMPHNLFLHSALVLSRRIPRSVQGIKEACRFYMIESGFALMV AFLINVSIISVSGAVCNSSNMNPEDQASCEDLDLNKASFLLRNVLGSWSSKLFGIALL ASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVAIIGGSAGAGKL IIIASMILSFELPFALIPLLKFTSSETKMGEHANSTAVSAIAWIIGSLIMGINIYYLV TSFIHFLLQSHWKLIAVVFLGIFGFVGVAIYLAAVAYLVFRPNKKATHLLALTTPDSR HMVNGSGRTSVDCLPREDIVSMQLPQRREQTEDMD" CDS complement(join(3773402..3773746,3773988..3774083, 3774868..3774999,3775530..3775634,3775798..3775971, 3776676..3776745,3776832..3777013,3777184..3777293, 3777741..3777845,3777928..3778006,3778429..3778469, 3778562..3778640,3780698..3780811)) /locus_tag="TCM_027424" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG035174t1" /codon_start=1 /product="NRAMP metal ion transporter 6 isoform 1" /protein_id="EOY26042.1" /db_xref="Phytozome:POPTR_0001s03650.1" /db_xref="TAIR:AT1G15960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SAH8" /translation="MAGSNSRQPQFIASTGNQSFSNAPLIQSADTDQIVVPERKSWKN LFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALVIQSLAANLGV VTGKHLAEHCRAEYPRGPNFILWVLAEIAVVACDIPEVIGTAFALNMLFNIPVWIGVL LTGLSTLVLLALQQYGVRKLEIFISFLVLTIAGCFLAELGYAKPVAGEVLKGLFVPQL KGNGATGLAISLLGAMVMPHNLFLHSALVLSRRIPRSVQGIKEACRFYMIESGFALMV AFLINVSIISVSGAVCNSSNMNPEDQASCEDLDLNKASFLLRNVLGSWSSKLFGIALL ASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVAIIGGSAGAGKL IIIASMILSFELPFALIPLLKFTSSETKMGEHANSTAVSAIAWIIGSLIMGINIYYLV TSFIHFLLQSHWKLIAVVFLGIFGFVGVAIYLAAVAYLVFRPNKKATHLLALTTPDSR HMVNGSGRTSVDCLPREDIVSMQLPQRREQTEDMD" mobile_element 3783782..3786372 /note="source:CACAO_M_E44403_F74_scaffold_6 1 2591" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3789237..3789296 /note="source:CACAO_M_E84368_F4_scaffold_10 8126 8192" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(3791514..3792159) /locus_tag="TCM_027426" /note="dbxref CacaoGD:Thecc1EG027426" mRNA complement(3791514..3792159) /locus_tag="TCM_027426" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage" CDS complement(3791568..3791807) /locus_tag="TCM_027426" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26043.1" /translation="MAEPQTRESRWRWSRAAVIGRSKNGAAFERQGVRKRENKMGLVL FYKVIFKIVKRYFYLFIFCSQQFEIVIFKSSFFFK" mobile_element complement(3792002..3792406) /note="source:CACAO_M_E49279_F74_scaffold_6 1268 1650" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3794190..3801241) /locus_tag="TCM_027427" /note="dbxref CacaoGD:Thecc1EG027427" mRNA complement(join(3794190..3795021,3799032..3799102, 3799197..3799323,3799745..3799835,3799944..3800065, 3800178..3800495,3800952..3801241)) /locus_tag="TCM_027427" /product="PRP38 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400042820" /inference="similar to AA sequence:Phytozome:POPTR_0013s01350.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:PASA:2:TSA:puevd3b026528t1a2; alternateUTRof:Thecc1EG027427t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1550t2" mRNA complement(join(3794190..3795021,3799032..3799102, 3799197..3799323,3799745..3799835,3799944..3800065, 3800178..3800490,3800952..3801226)) /locus_tag="TCM_027427" /product="PRP38 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400042820" /inference="similar to AA sequence:Phytozome:POPTR_0013s01350.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1550t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1550t2" mRNA complement(join(3794351..3795021,3799032..3799102, 3799197..3799323,3799745..3799835,3799944..3800038, 3800295..3800453,3800511..3800740)) /locus_tag="TCM_027427" /product="PRP38 family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400042820" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01671t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1550t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc39t4_C2" mRNA complement(join(3794395..3795021,3799032..3799102, 3799197..3799323,3799745..3799835,3799944..3800065, 3800178..3800497)) /locus_tag="TCM_027427" /product="PRP38 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400042820" /inference="similar to AA sequence:Phytozome:POPTR_0013s01350.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01884t00001; alternateUTRof:Thecc1EG027427t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1550t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc39t4_C2" CDS complement(join(3794580..3795021,3799032..3799102, 3799197..3799323,3799745..3799835,3799944..3800065, 3800178..3800467)) /locus_tag="TCM_027427" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="PRP38 family protein isoform 1" /protein_id="EOY26044.1" /db_xref="Phytozome:POPTR_0013s01350.1" /db_xref="TAIR:AT2G40650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7A4" /translation="MANRTDPAAKSIRGTNPQNLVEKIVRSKIYQNTYWKEQCFGLTA ETLVDKAMELDHIGGTYGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRIL GAFYLRLTGTDIDVYRYLEPLYNDYRKLRQKSPDGNFSLTHVDEVIDELLTRDYSCDI ALPRIKKRWTLESLGALDPRKSVLEDDFEEEEEKEENEQDGLEDEPAHERDYHRARSP ARERERDRRHGSHRYRDRDYDKDRDYDRDRGRGRDRERDRERDRDRDRDRYRLRDEKE YGRERERDREREGRERDRRDKDRSRRRSRSRSRDRKRHARGSTSPRRHEPEDGSTWEE TKKEKKEKKEKREKKEKKDDGTDHPDPEIAEANRIRASLGLKPLKL" CDS complement(join(3794580..3795021,3799032..3799102, 3799197..3799323,3799745..3799835,3799944..3800065, 3800178..3800467)) /locus_tag="TCM_027427" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="PRP38 family protein isoform 1" /protein_id="EOY26045.1" /db_xref="Phytozome:POPTR_0013s01350.1" /db_xref="TAIR:AT2G40650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7A4" /translation="MANRTDPAAKSIRGTNPQNLVEKIVRSKIYQNTYWKEQCFGLTA ETLVDKAMELDHIGGTYGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRIL GAFYLRLTGTDIDVYRYLEPLYNDYRKLRQKSPDGNFSLTHVDEVIDELLTRDYSCDI ALPRIKKRWTLESLGALDPRKSVLEDDFEEEEEKEENEQDGLEDEPAHERDYHRARSP ARERERDRRHGSHRYRDRDYDKDRDYDRDRGRGRDRERDRERDRDRDRDRYRLRDEKE YGRERERDREREGRERDRRDKDRSRRRSRSRSRDRKRHARGSTSPRRHEPEDGSTWEE TKKEKKEKKEKREKKEKKDDGTDHPDPEIAEANRIRASLGLKPLKL" CDS complement(join(3794580..3795021,3799032..3799102, 3799197..3799323,3799745..3799835,3799944..3800065, 3800178..3800467)) /locus_tag="TCM_027427" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="PRP38 family protein isoform 1" /protein_id="EOY26046.1" /db_xref="Phytozome:POPTR_0013s01350.1" /db_xref="TAIR:AT2G40650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7A4" /translation="MANRTDPAAKSIRGTNPQNLVEKIVRSKIYQNTYWKEQCFGLTA ETLVDKAMELDHIGGTYGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRIL GAFYLRLTGTDIDVYRYLEPLYNDYRKLRQKSPDGNFSLTHVDEVIDELLTRDYSCDI ALPRIKKRWTLESLGALDPRKSVLEDDFEEEEEKEENEQDGLEDEPAHERDYHRARSP ARERERDRRHGSHRYRDRDYDKDRDYDRDRGRGRDRERDRERDRDRDRDRYRLRDEKE YGRERERDREREGRERDRRDKDRSRRRSRSRSRDRKRHARGSTSPRRHEPEDGSTWEE TKKEKKEKKEKREKKEKKDDGTDHPDPEIAEANRIRASLGLKPLKL" CDS complement(join(3794580..3795021,3799032..3799102, 3799197..3799323,3799745..3799835,3799944..3800038, 3800295..3800314)) /locus_tag="TCM_027427" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="PRP38 family protein isoform 4" /protein_id="EOY26047.1" /db_xref="TAIR:AT2G40650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7A4" /translation="MELDHIGLRLTGTDIDVYRYLEPLYNDYRKLRQKSPDGNFSLTH VDEVIDELLTRDYSCDIALPRIKKRWTLESLGALDPRKSVLEDDFEEEEEKEENEQDG LEDEPAHERDYHRARSPARERERDRRHGSHRYRDRDYDKDRDYDRDRGRGRDRERDRE RDRDRDRDRYRLRDEKEYGRERERDREREGRERDRRDKDRSRRRSRSRSRDRKRHARG STSPRRHEPEDGSTWEETKKEKKEKKEKREKKEKKDDGTDHPDPEIAEANRIRASLGL KPLKL" mobile_element complement(3803921..3804832) /note="source:CACAO_M_E49279_F74_scaffold_6 1002 1938" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3805401..3808980) /locus_tag="TCM_027428" /note="dbxref CacaoGD:Thecc1EG027428" mRNA complement(join(3805401..3807067,3808690..3808980)) /locus_tag="TCM_027428" /product="CBL-interacting protein kinase 25" /inference="alignment:exonerate- protein:2:ricco:29588.m000851" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036914t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s27940.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1324t1" mobile_element complement(3805626..3805718) /note="source:CACAO_M_E12463_F12_scaffold_3 4509 4595" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(3805699..3807048) /locus_tag="TCM_027428" /note="paralog of Thecc1EG036914t1" /codon_start=1 /product="CBL-interacting protein kinase 25" /protein_id="EOY26048.1" /db_xref="Phytozome:POPTR_0006s27940.1" /db_xref="TAIR:AT5G25110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W1D5" /translation="MEEQAENQRISKKNGTRNIIFRKYEMGRVLGQGTFAKVYYGKNI STQESVAIKVTNKDQVKKEGFMEQIKREIAIMRLVRHPNVVELKEVMATKARIFFVME YVKGGELFAKVAKGKLKEDSARKYFQQLVSAVDFCHSRGVFHRDLKPENLLLDENENL KVTDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRKKGYDGAKADIWSCGVILFVLL TGYLPFQAENVMKMYRKVFKAEYEFPPWISNDARRLISKLLVADPEKRITIPGIMRNP WFRKGFTKPVVVSTEESSAEIGDKRDIESSGVLEMATTKSSPPFYNAFELISSMSSGF DLSNLFESKTKPASLFTSKCSASAIMARLESMAKKLNFRVLTMKEFKVKMQGKAEGRK GKLAVTAEVFEVAPEVAVVEFSKSAGDTLEYNRFCEEDMRPALRDIVWSWQGENNCQ" mobile_element 3811004..3811071 /note="source:CACAO_M_S_E5210_F12_scaffold_1 11482 11548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3811024..3813104 /note="source:scaffold_6_CACTA_0709 4049 6134" /mobile_element_type="transposon:TIR/CACTA" gene 3815047..3816155 /locus_tag="TCM_027429" /note="dbxref CacaoGD:Thecc1EG027429" mRNA 3815047..3816155 /locus_tag="TCM_027429" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS 3815661..3815894 /locus_tag="TCM_027429" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26049.1" /translation="MNCSFFLDILFFEDFSYVPPFMSCLVHIEFVFLLLFVAFSSWFV YPKAFFFLFTLCCCCLTSFRCSQLFRTEFHFFV" mobile_element 3818003..3820187 /note="source:INTACT904F_F49_scaffold_6-int 1 2193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3820189..3822015 /note="source:CACAO_M_S_E84261_F4_scaffold_6 1 1861" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3822015..3825908) /note="source:CACAO_M_E3884_F22_scaffold_1 14949 18831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3823909..3826348 /note="source:INTACT189_F49_scaffold_5-int 14135 16562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3826452..3828947 /note="source:INTACT189_F49_scaffold_5-int 16569 19069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3828947..3829347 /note="source:CACAO_M_E58877_F5_scaffold_9 17827 18222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3830288..3831036 /note="source:CACAO_M_E12044_F76_scaffold_2 19830 20572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3831463..3831629 /note="source:INTACT1427F_F390_scaffold_9-int 17017 17175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3831642..3832852 /note="source:INTACT1427F_F390_scaffold_9-int 2935 3898" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3833353..3834581 /note="source:CACAO_M_E58877_F5_scaffold_9 9654 10882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3838324..3840229 /note="source:CACAO_M_E58877_F5_scaffold_9 17078 18945" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3841131..3841188 /note="source:INTACT458_F219_scaffold_7-int 17058 17116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3841166..3841247 /note="source:INTACT458_F219_scaffold_7-int 2194 2274" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3841354..3847778 /locus_tag="TCM_027432" /note="dbxref CacaoGD:Thecc1EG027432" mRNA join(3841354..3842094,3846756..3847778) /locus_tag="TCM_027432" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete" CDS join(3841428..3842094,3846756..3846976) /locus_tag="TCM_027432" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26050.1" /translation="MHPALTLPHQQQTNQLLLLLTGGQEPAFNSPNRRPNNPAFTSPN RRQKPAFNSPNRRQTTQLLLLLTGGKKPAFLWCRASRRSTLSSSVRCSFPSRQIFAAA APFLSGAAPAAAPLSLPPFDAPSSCAGSRMPLPLFSIFLPNSLSLFFWFSGCFSLLRK LPPCCRFSPSHLYPISGLWRGRSTTALSLGTQGQVPLTCQTRIFRVWQVREVPGRVRP HPASPASCVALMMEAQVSNALPSDFRVTRPANLYLLEFECWLETLIGCREAEFALVSK HSDVHCLVLRILNVSESCW" mobile_element 3841869..3842767 /note="source:CACAO_M_E48538_F49_scaffold_6 1183 1801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3842716..3842772) /note="source:INTACT1373F_F385_scaffold_8-int 21059 21117" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3852239..3861118 /locus_tag="TCM_027433" /note="dbxref CacaoGD:Thecc1EG027433" mRNA join(3852239..3852339,3852550..3852571,3852989..3853199, 3853267..3853310,3855923..3855993,3856318..3856399, 3860609..3861118) /locus_tag="TCM_027433" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(3853033..3853199,3853267..3853310,3855923..3855993, 3856318..3856399,3860609..3860991) /locus_tag="TCM_027433" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26051.1" /translation="MIDEVLAYIQPCVTMAMNEELFTDISVKVVQLALFHMATLKTLG PNILPALFYQRLRVPKKFTKVGIVPRGRLGIASLNRRHIDLILKVAHPELCISTVTYS MFVNEVPRNMIVPTRGLRQGDWFNMLLQQIDKDDIEEICCVMWALWKSRNSIMVKNER MNLIQVVQLEYDMYTWYKVAIFVERSNQLTTGSKGNWWSCLARTKLNYDLAIFELNGE RWVGSSFIIKNSNGKLVRRLCLIQMLCWLS" mobile_element complement(3853198..3855740) /note="source:CACAO_M_S_E144694_F278_scaffold_10 399 2971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3855745..3855863) /note="source:CACAO_M_E33778_F134_scaffold_4 1 120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3857353..3860085) /note="source:CACAO_M_E36309_F144_scaffold_5 1 2681" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3866310..3866553) /note="source:scaffold_5_CACTA_0610 5126 5355" /mobile_element_type="transposon:TIR/CACTA" gene 3870167..3872201 /locus_tag="TCM_027435" /note="dbxref CacaoGD:Thecc1EG027435" mRNA join(3870167..3870512,3870620..3870679,3870840..3871163, 3871297..3871413,3871510..3872047) /locus_tag="TCM_027435" /product="WRKY DNA-binding protein 40, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:43951.m000016" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036913t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s03620.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02936t00001; inference alignment:Newbler:10:TSA:cgbaP1_g02936t00001" mRNA join(3870300..3870512,3870623..3870679,3870840..3871163, 3871297..3871413,3871510..3872201) /locus_tag="TCM_027435" /product="WRKY DNA-binding protein 40, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:43951.m000016" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036913t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s03620.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc304t1; inference alignment:Newbler:10:TSA:cgbaP1_g02936t00001" CDS join(3870438..3870512,3870620..3870679,3870840..3871163, 3871297..3871413,3871510..3871863) /locus_tag="TCM_027435" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG036913t1" /codon_start=1 /product="WRKY DNA-binding protein 40, putative isoform 1" /protein_id="EOY26052.1" /db_xref="Phytozome:POPTR_0001s03620.1" /db_xref="TAIR:AT1G80840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SAH7" /translation="MDSSSWVDTSLDLNASARSLRLGTPKKESTSNLIVFGKKLSATE ETGALVEELNRVSAENKKLTEMLTAMCESYNALQSQLMDLMSKNPEKEFSPSKKRKSE SSNNNDNKFGIIGNSESSSTDEESCKKPREEIIKAKISRVSVRTEASDTSLVVKDGYQ WRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQLVLVATYEGEHNHLPPSQ MEATSGSSRCMTLGSVPCSASLNSSGPTVTLDLTKSKSSTDEARNSKSKMESPEVRQY LVEQMASSLTKDPNFTAALAAAISGRMFSTKSN" CDS join(3870438..3870512,3870623..3870679,3870840..3871163, 3871297..3871413,3871510..3871863) /locus_tag="TCM_027435" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG036913t1" /codon_start=1 /product="WRKY DNA-binding protein 40, putative isoform 2" /protein_id="EOY26053.1" /db_xref="Phytozome:POPTR_0001s03620.1" /db_xref="TAIR:AT1G80840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SAH7" /translation="MDSSSWVDTSLDLNASARSLRLGTPKESTSNLIVFGKKLSATEE TGALVEELNRVSAENKKLTEMLTAMCESYNALQSQLMDLMSKNPEKEFSPSKKRKSES SNNNDNKFGIIGNSESSSTDEESCKKPREEIIKAKISRVSVRTEASDTSLVVKDGYQW RKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQLVLVATYEGEHNHLPPSQM EATSGSSRCMTLGSVPCSASLNSSGPTVTLDLTKSKSSTDEARNSKSKMESPEVRQYL VEQMASSLTKDPNFTAALAAAISGRMFSTKSN" gene complement(3873320..3878199) /locus_tag="TCM_027436" /note="dbxref CacaoGD:Thecc1EG027436" mRNA complement(join(3873320..3874063,3874305..3874452, 3874631..3874714,3874799..3874856,3877460..3878199)) /locus_tag="TCM_027436" /product="DNA glycosylase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g025650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037057t4" /inference="similar to AA sequence:frave:gene10080" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc700t5" CDS complement(join(3873734..3874063,3874305..3874452, 3874631..3874714,3874799..3874856,3877460..3877970)) /locus_tag="TCM_027436" /note="dbxref frave:gene10080; paralog of Thecc1EG037057t4" /codon_start=1 /product="DNA glycosylase superfamily protein, putative" /protein_id="EOY26054.1" /db_xref="TAIR:AT5G57970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJL9" /translation="MSGPPRVRSVNIATEMEARSVLGPTGNKGPRKPAPKSVKKTEKP VQETGERQEKEKEKEFLSPQKQQMPVPQSLTLTASILRQQERKAGNLSMSLSCLSDGG ASSSSAGSSSSGRTGGGRRGGGVRVGVGVRRKQSGVKVEKVESGVEVESGAGGCLEDK KRCGWVTPYSDPCYAAFHDEEWGVPVHDDRKLFELLSLSGALAELTWPTILRKRHMFR EIFLEFDPSSISKLSEKKIGAPGSLASSLLSLSELKIRGIIENARQICKVIDEFGSFD KYIWSFVNHKPLVGQFRYPRQVPVKSPKSEVISKDLVRRGFRSVGPTVIYSFMQVAGL TNDHLISCFRFLECITGLESREKGNGEANGETRKLEETTGLG" assembly_gap 3878200..3888199 /estimated_length=10000 /gap_type="between scaffolds" mobile_element 3889819..3891253 /note="source:CACAO_M_E44411_F9_scaffold_6 1 1435" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3892105..3892482 /note="source:CACAO_M_E53587_F207_scaffold_8 1 375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3892496..3893173 /note="source:INTACT659F_F82_scaffold_5-int 6265 6937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3893274..3895306 /note="source:CACAO_M_E58781_F85_scaffold_9 93 2126" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3895616..3897106) /note="source:INTACT760_F85_scaffold_9-int 6414 7922" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3898464..3900343) /note="source:CACAO_M_E45167_F85_scaffold_6 2770 4641" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3900579..3900873 /note="source:CACAO_M_E58258_F82_scaffold_9 489 782" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3902345..3903705 /note="source:CACAO_M_E34938_F33_scaffold_5 578 1938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3903703..3903916) /note="source:CACAO_on_S_E390_scaffold_9 14869 15082" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3914506..3915007) /note="source:CACAO_M_E52313_F33_scaffold_7 1 502" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3915008..3915091) /note="source:CACAO_M_E52541_F82_scaffold_7 1658 1741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3915008..3915076 /note="source:scaffold_9_CACTA_0934 3893 4474" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3915079..3916007) /note="source:CACAO_M_E44364_F82_scaffold_6 2380 3312" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3916108..3917129 /note="source:CACAO_M_E10355_F82_scaffold_2 971 1991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3917230..3917890) /note="source:CACAO_M_E59703_F82_scaffold_9 612 1270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3917991..3918593) /note="source:CACAO_M_E59482_F82_scaffold_9 1 603" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3918594..3919053) /note="source:CACAO_M_E48965_F85_scaffold_6 1250 1708" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3919883..3920268 /note="source:CACAO_M_E72655_F85_scaffold_10 2927 3313" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3920792..3923361) /note="source:CACAO_M_S_E98366_F278_scaffold_8 399 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3923366..3923511 /note="source:INTACT767_F326_scaffold_6-int 2852 3000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3924563..3924639) /note="source:INTACT277_F12_scaffold_9-int 275 352" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3925436..3926021) /note="source:CACAO_M_E58843_F33_scaffold_9 2296 2882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3926122..3926499) /note="source:CACAO_M_E12182_F33_scaffold_3 1 378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3926360..3926519 /note="source:CACAO_M_E49195_F17_scaffold_6 13080 13241" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3933572..3935198) /note="source:CACAO_M_E71526_F33_scaffold_10 1336 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3935194..3936484 /note="source:CACAO_M_E22265_F82_scaffold_3 4044 5334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3937943..3938284) /note="source:INTACT901F_F95_scaffold_6-int 9555 9897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3957981..3958482 /note="source:CACAO_M_E34474_F33_scaffold_5 1612 2113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3964743..3965086 /note="source:CACAO_M_E44425_F33_scaffold_6 5662 6005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3965719..3969231 /note="source:CACAO_M_E44425_F33_scaffold_6 6006 9518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3970268..3972192 /note="source:CACAO_M_E44425_F33_scaffold_6 9519 11443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3973115..3980653 /note="source:CACAO_M_E44425_F33_scaffold_6 11921 19459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3980754..3987406 /note="source:CACAO_M_E44425_F33_scaffold_6 19460 26112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3987407..3988242 /note="source:CACAO_M_E44086_F33_scaffold_5 2099 2934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3989146..3989774 /note="source:CACAO_M_E35811_F12_scaffold_5 14714 15319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3989775..3993167) /note="source:CACAO_M_E52472_F323_scaffold_7 1 3443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3993168..3993608 /note="source:CACAO_M_S_E99477_F254_scaffold_9 597 1047" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3993709..3995508) /note="source:CACAO_M_E49857_F85_scaffold_7 4059 5896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3997812..3997923) /note="source:CACAO_M_E53587_F207_scaffold_8 20227 20342" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3998890..3998962 /note="source:CACAO_M_S_E34046_F60_scaffold_4 3505 3576" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4003185..4003704 /note="source:CACAO_M_E34487_F323_scaffold_5 2646 3181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4003701..4004786 /note="source:CACAO_M_S_E34046_F60_scaffold_4 3723 4806" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4003705..4003789) /note="source:INTACT465_F78_scaffold_6-int 2538 2627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4004887..4005581) /note="source:CACAO_M_E57825_F323_scaffold_9 2565 3258" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4008057..4009645 /note="source:CACAO_M_S_E34046_F60_scaffold_4 5693 6461" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4009650..4010237 /note="source:CACAO_M_E57389_F323_scaffold_9 1288 1873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4010338..4010675 /note="source:CACAO_M_E33634_F323_scaffold_4 1940 2276" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4010372..4011361) /note="source:CACAO_M_S_E100312_F82_scaffold_9 3914 4902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4013436..4014735 /note="source:CACAO_M_E5699_F204_scaffold_2 1 1306" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4014847..4015455) /note="source:CACAO_on_S_E390_scaffold_9 14492 15058" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4019090..4020037 /note="source:CACAO_M_E33885_F86_scaffold_4 2842 3790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4029656..4031053 /note="source:CACAO_M_E33885_F86_scaffold_4 3267 4663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4031714..4032038 /note="source:scaffold_4_CACTA_0494 16262 16585" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4035702..4036005 /note="source:CACAO_M_E52617_F328_scaffold_7 2877 3182" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4035998..4037808) /note="source:CACAO_M_E56731_F86_scaffold_8 1 1812" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4037809..4038368) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17250 17813" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4040967..4044074 /note="source:CACAO_M_S_E66915_F51_scaffold_6 1 3108" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4045645..4048567 /note="source:CACAO_M_S_E34046_F60_scaffold_4 3510 6459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4048910..4051694 /note="source:INTACT465_F78_scaffold_6-int 4504 7272" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4052533..4052796) /note="source:scaffold_4_CACTA_0494 5878 6142" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4052783..4052798 /note="source:CACAO_M_S_E5285_F300_scaffold_1 6620 6635" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4052799..4056136 /note="source:CACAO_M_E44452_F85_scaffold_6 1 3338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4056144..4057488) /note="source:INTACT409F_F47_scaffold_4-int 8854 10136" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4062086..4062738 /note="source:CACAO_M_S_E2040_F42_scaffold_1 2465 3117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4062739..4063126) /note="source:CACAO_M_S_E6531_F312_scaffold_2 976 1363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4063127..4066085 /note="source:CACAO_M_S_E66929_F52_scaffold_6 1 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4066086..4067044) /note="source:CACAO_M_S_E6531_F312_scaffold_2 3 980" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4068172..4070119) /locus_tag="TCM_027447" /note="dbxref CacaoGD:Thecc1EG027447" mRNA complement(join(4068172..4069447,4069599..4070119)) /locus_tag="TCM_027447" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046286t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.46 coverage" CDS complement(join(4069129..4069447,4069599..4069822)) /locus_tag="TCM_027447" /note="paralog of Thecc1EG046286t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26055.1" /translation="MTSIVDQTTSSLNTLVQNSVNVANRETAHTRAVKCYESEDILRA LDNCISRCETIINHEVWSNFERVEDNVEQLGFDTTYASSSNSVCIVNGDTAHIGAVYL DDTSQLRVSNPHSKTHLNLEVFSRQLEKSYLKHTYNACGEPDEDLLCKETTRQRGHCL NQVGENVIVYRSVTSPTPYE" mobile_element 4072926..4073142 /note="source:CACAO_M_E33977_F20_scaffold_4 5741 5970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4073038..4073151 /note="source:scaffold_1_CACTA_0009 4805 4945" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4073113..4073368 /note="source:CACAO_M_E33977_F20_scaffold_4 5709 6000" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4074534..4076237 /locus_tag="TCM_027448" /note="dbxref CacaoGD:Thecc1EG027448" mRNA join(4074534..4074806,4075422..4075532,4075657..4075681, 4075811..4076237) /locus_tag="TCM_027448" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage" CDS join(4074648..4074806,4075422..4075532,4075657..4075681, 4075811..4075992) /locus_tag="TCM_027448" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26056.1" /translation="MEDQAEWGSSARVNRRNLKEKRTTSIKQRRTAVTESEEHSGLEL MEERDDHGNHRRDMLELKASIQSLKDAIWTFEDRITGRILKDMILQGGASSHHDGDVT LQSVNAEANHVLQANVVVDAATEVDGTLNQLKLKETMFLRPMRLSRQLRKGMGTLN" mobile_element 4076614..4079275 /note="source:CACAO_Mutator_E1998_scaffold_9 7510 10206" /mobile_element_type="transposon:TIR/Mutator" gene 4079644..4083390 /locus_tag="TCM_027449" /note="dbxref CacaoGD:Thecc1EG027449" mRNA join(4079644..4080256,4080347..4080497,4080763..4080810, 4081102..4081292,4081457..4081714,4081901..4082006, 4082669..4082754,4082844..4083390) /locus_tag="TCM_027449" /product="NDH-dependent cyclic electron flow 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30131.m006851" /inference="similar to AA sequence:ricco:30131.m006851" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00414t00006" mRNA join(4079760..4080256,4080347..4080497,4081102..4081292, 4081457..4081714,4081901..4082006,4082669..4082754, 4082844..4083244) /locus_tag="TCM_027449" /product="NDH-dependent cyclic electron flow 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30131.m006851" /inference="similar to AA sequence:ricco:30131.m006851" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00414t00006; inference alignment:Newbler:10:TSA:cgbaL_g00414t00006; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1161t9" CDS join(4079826..4080256,4080347..4080497,4080763..4080810, 4081102..4081292,4081457..4081714,4081901..4082006, 4082669..4082754,4082844..4083009) /locus_tag="TCM_027449" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30131.m006851" /codon_start=1 /product="NDH-dependent cyclic electron flow 1 isoform 1" /protein_id="EOY26057.1" /db_xref="TAIR:AT1G15980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S9N6" /translation="MATTLLPKTVYPILTNRPSIPSAHFTTKPPFFSPLDLSPCTKRP SVQTNAKKKNPWLDPFDDGEDPNMEYGSLFTDGKQEEDPRPPDNPDNPYGFLKFPMGF AVELASLPLKIRGDVRRCCCVISGGVYENLLFFPAIQLIKDRYPGVQVDVLASERGKQ TYELNKNVRWANAYDPDDEWPEPAEYTDMVGLLKGKRKREEKVLEHMKTTSRYYDMVL STKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTADSMNLSEGGYNMYH QMVDWLGRPFRSVPRHSVGPLRVSISRKLKKVVAEKYRTAGAEKGKYIVIHGIESDSK ASMQSRGDTDSLLPIQVWAEIAKDIRGFKPLLVIPHEKERENVEEVVGDDASIVFITT PGQLAALINDSAGVIATNTAAIQLAGAREKPSIGLFCSKQKGKLFVPNPEEKKCAIVS SKTGKLRDVEVEAVKQAMQIFDMSFALV" CDS join(4079826..4080256,4080347..4080497,4081102..4081292, 4081457..4081714,4081901..4082006,4082669..4082754, 4082844..4083009) /locus_tag="TCM_027449" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30131.m006851" /codon_start=1 /product="NDH-dependent cyclic electron flow 1 isoform 2" /protein_id="EOY26058.1" /db_xref="TAIR:AT1G15980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S9N6" /translation="MATTLLPKTVYPILTNRPSIPSAHFTTKPPFFSPLDLSPCTKRP SVQTNAKKKNPWLDPFDDGEDPNMEYGSLFTDGKQEEDPRPPDNPDNPYGFLKFPMGF AVELASLPLKIRGDVRRCCCVISGGVYENLLFFPAIQLIKDRYPGVQVDVLASERGKQ TYELNKNVRWANAYDPDDEWPEPAEYTDMVGLLKSRYYDMVLSTKLAGLGHAAFLFMT TARDRVSYIYPNVNAAGAGLLLSETFTADSMNLSEGGYNMYHQMVDWLGRPFRSVPRH SVGPLRVSISRKLKKVVAEKYRTAGAEKGKYIVIHGIESDSKASMQSRGDTDSLLPIQ VWAEIAKDIRGFKPLLVIPHEKERENVEEVVGDDASIVFITTPGQLAALINDSAGVIA TNTAAIQLAGAREKPSIGLFCSKQKGKLFVPNPEEKKCAIVSSKTGKLRDVEVEAVKQ AMQIFDMSFALV" gene complement(4083828..4086721) /locus_tag="TCM_027450" /note="dbxref CacaoGD:Thecc1EG027450" mRNA complement(join(4083828..4084230,4086358..4086721)) /locus_tag="TCM_027450" /product="Phospholipid N-methyltransferase" /inference="alignment:exonerate- protein:2:ricco:30131.m006852" /inference="similar to AA sequence:ricco:30131.m006852" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1393t5" CDS complement(join(4083981..4084230,4086358..4086602)) /locus_tag="TCM_027450" /note="dbxref ricco:30131.m006852" /codon_start=1 /product="Phospholipid N-methyltransferase" /protein_id="EOY26059.1" /db_xref="TAIR:AT1G80860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SAH5" /translation="MGMLAGVGILVPFPFYYLLWTYPRSWVNLCGKGRDPSKVMALFS HFFKLVQFISLFSVCSLSWPPPLYFWPLFAFGQLLNFRVYKLLGESGTYYGVRFGKNI PWVTEFPFGFIRDPQYVGSIMSLVACLSWVPFQYILLWSLGYLFMMHVESTENLATRA KPLS" mobile_element 4088773..4088816 /note="source:CACAO_M_E53388_F15_scaffold_8 6419 6463" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4092875..4095773 /note="source:CACAO_on_E565_scaffold_5 3060 5943" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4095321..4095823) /note="source:CACAO_M_E23493_F73_scaffold_4 4661 5136" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4108273..4125566 /locus_tag="TCM_027452" /note="dbxref CacaoGD:Thecc1EG027452" mRNA join(4108273..4108616,4108832..4108962,4110185..4111137, 4125205..4125566) /locus_tag="TCM_027452" /product="Acyl-CoA N-acyltransferases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000774t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s03570.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1373t2" CDS join(4108380..4108616,4108832..4108962,4110185..4111052) /locus_tag="TCM_027452" /note="paralog of Thecc1EG000774t1" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein" /protein_id="EOY26060.1" /db_xref="Phytozome:POPTR_0001s03570.1" /db_xref="TAIR:AT4G37580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9Y0" /translation="MALKVAAVNSSRAAAAVATQDWEEDLVVVREYDEEKDKVAVEEM ERRCEIGEGGKPSLVADLLGDPICRVRHFPSHIMLVAEYGEKGEIVGVIRGCVKTVTR GNSVYVKLAYILGLRISPSYRRLGIGKKLVQKLEEWCKQNGAEYVYMATDCSNEPSIN LFTRKCAYTKFRTPTMLVHPVHAHYKPLGSGIAIVRLNPRLAESIYRRVFANSEFFPK DIDNILCNRLSLGTFMALPRKCLPKWDPKTGTLPPSFAITSIWSTKQLFRLQVKGVSM LTYACCMASRVVDAWMPWLMLPSIPDVFRKFWVYFLYGLHMEGKNASRLMKSLCAFAH NMGRDDDGCGAVLAEVGQRDPVREVIPHWRKFSLSEDLWCIKKLGNANDGSNEICGSS DWMKSRPSSRFLFVDPRDI" mobile_element 4113457..4114150 /note="source:INTACT599_F268_scaffold_9-int 6 697" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4114151..4115598 /note="source:CACAO_M_E34332_F273_scaffold_4 1 1453" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4114580..4117251 /note="source:CACAO_M_S_E66812_F83_scaffold_6 261 2939" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4115599..4116844 /note="source:scaffold_4_CACTA_0503 3237 5929" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4116845..4117253) /note="source:INTACT135F_F90_scaffold_2-int 5634 8734" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4120223..4122793) /note="source:CACAO_M_S_E145931_F313_scaffold_11 417 3036" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4122894..4123291) /note="source:CACAO_M_S_E86211_F313_scaffold_7 1 398" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4123419..4124922 /note="source:CACAO_M_S_E66934_F17_scaffold_6 1 1504" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4128578..4137507) /note="source:INTACT688_F14_scaffold_11-int 1219 10195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4146575..4147513 /note="source:CACAO_M_E49548_F86_scaffold_7 1 938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4147614..4148336) /note="source:CACAO_M_E35100_F86_scaffold_5 1218 1941" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4148333..4149767) /note="source:CACAO_M_E22854_F86_scaffold_3 1 1447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4149768..4149808 /note="source:CACAO_M_E42514_F40_scaffold_5 20685 20724" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(4153245..4181369) /locus_tag="TCM_027457" /note="dbxref CacaoGD:Thecc1EG027457" mRNA complement(join(4153245..4154213,4154870..4155037, 4156293..4156482,4156794..4156981,4157090..4157251, 4157330..4157440,4157579..4157671,4157837..4157935, 4158633..4158755,4159211..4159264,4159375..4159486, 4159570..4159745,4160678..4160834,4160987..4161270, 4162635..4162782,4162889..4163020,4163656..4163723, 4163812..4163913,4165821..4166069,4166175..4166255, 4166369..4166485,4166608..4166725,4168447..4168513, 4169872..4169969,4170337..4170455,4171693..4171780, 4172484..4172544,4175613..4175682,4176185..4176436, 4177489..4177552,4178264..4178364,4179339..4179470, 4179602..4179852,4180494..4180739,4181218..4181369)) /locus_tag="TCM_027457" /product="Multidrug resistance-associated protein 11" /inference="alignment:exonerate- protein:2:ricco:30131.m006854" /inference="similar to AA sequence:ricco:30131.m006854" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1507t5" mobile_element 4153913..4153960 /note="source:CACAO_M_E4063_F12_scaffold_2 4967 5009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4153919..4153970) /note="source:scaffold_1_CACTA_0011 13373 13424" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(4154133..4154213,4154870..4155037, 4156293..4156482,4156794..4156981,4157090..4157251, 4157330..4157440,4157579..4157671,4157837..4157935, 4158633..4158755,4159211..4159264,4159375..4159486, 4159570..4159745,4160678..4160834,4160987..4161270, 4162635..4162782,4162889..4163020,4163656..4163723, 4163812..4163913,4165821..4166069,4166175..4166255, 4166369..4166485,4166608..4166725,4168447..4168513, 4169872..4169969,4170337..4170455,4171693..4171780, 4172484..4172544,4175613..4175682,4176185..4176436, 4177489..4177552,4178264..4178364,4179339..4179392)) /locus_tag="TCM_027457" /note="dbxref ricco:30131.m006854" /codon_start=1 /product="Multidrug resistance-associated protein 11" /protein_id="EOY26061.1" /db_xref="TAIR:AT2G07680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SKX0" /translation="MKPLFGVPHLQMAFSSLEVFECLQESSIVFLDIMFCLSINYIRI KRASTKSSPMEDSLLCAEMDAEEGCQRDSRSTQGFWDHMTFRSITSVMNRGLIKQLDF DDLLLLPTDMDPSTCHDKLLSCWQDQQNNSCSNASFLGAIFSAYGGPYLRLGLLKVFN DCIGFGGPLLLNKLIRFLQQGSGSLDGYVFAILLGLVSVIKSFSDTQYTYHLSKLKLK LRSSIMTVIYRKCLYVSIAEQSKFSEGEIQTFMSIDADRTVNLCNSFHDLWSLPLQIG VALYLLYTQVKLAFMSGLAITIILIPVNKWISELIASATEKMMKQKDERIRRTGELLA HIRALKMYSWEILFSRWLMDTRSLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLF TLMGHQLDAAVVFTCLALFNNLISPLNTFPWVINGLIDAFISTRRLSRFLCCSEKKSE VEQADKFQPIFSNDQSDLVSKDMAVVMHDACCAWSSSNEDQNLVLNHVTLSLPNGLLV AVIGEVGSGKSSLLNSILQETRLVHGSIYSRGSSAYVPQVPWILSGTIRDNILFGKNQ DSQRYADVLQACTLDVDISLMAGHDLAYIGEKGTNLSGGQRARLALARAIYQDSDVYL LDDILSAVDAHVAKWILHNAILGPLMEHKTRILCTHNVQAISSADIVVVMEKGHVKWV GNSADLAESVYSGFASVNEFDTSSYIHSKLYSANPSNMGKQSLLMEKNTDDVQLEAEE IIKAEQRKEGTVELIVYKKYAAFSGWFIAVVIFLSAILMQASRNGNDLWLSYWVDTTG SSQAKYSTSFYLLVLCIFCIINSSLTLVRAFSFAFGGLQAAVQVHNTLLNKLINAPVK FFDQTPGGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIAVVLSYVQVLFLLLLL PFWYIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAFNSEDYFLARF TELVAQYQITSYSELTASLWLSLRLQLIAASIISFVAVMAVIGSRGSLPISFGTPGLV GLALSYAAPIVSLLGSFLTSFTETEKEMVSLERALQYMDVPQEELHGFQSLNSGWPFQ GVIEFQNVTMKYMPSLPAALNDITFTIAGGKQVGIVGRTGAGKSSILNALFRLTPICR GQILVDGLNIVDIPVRDLRAHLAVVPQSPFLFEGSLRDNLDPLQISTDMKIWDILEKC HIKDEVAVAGGLDAHVKEAGASFSVGQRQLLCLARALLKSSKVLCLDECTANVDMQTA SILQKAISSECIGMTVITIAHRISTVLNMDNIFVLNQGTLVEQGNPQALLQDDSSIFS SFAKASTI" mobile_element complement(4182951..4183761) /note="source:INTACT687_F13_scaffold_3-int 1297 2053" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4190850..4192386 /note="source:INTACT11_F4_scaffold_8-int 3546 5061" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4191697..4193587) /note="source:CACAO_M_S_E51722_F106_scaffold_4 2727 4630" /mobile_element_type="retrotransposon:LTR/Copia" gene 4196004..4197279 /locus_tag="TCM_027459" /note="dbxref CacaoGD:Thecc1EG027459" mRNA 4196004..4197279 /locus_tag="TCM_027459" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012660t1" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS 4196410..4196664 /locus_tag="TCM_027459" /note="paralog of Thecc1EG012660t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26062.1" /translation="MISSMLRNTQQEVSFSWGEQQQHAYKKIKGILASFMTMTMPNQG KPMMLCLTTTPYSISALLIQEVEEQEQLVYYLSRCLHGVN" mobile_element complement(4197599..4197687) /note="source:CACAO_M_E12463_F12_scaffold_3 4674 4760" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4201416..4201463) /note="source:scaffold_5_CACTA_0586 11638 11685" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4201634..4201686 /note="source:INTACT711_F307_scaffold_9-int 1901 1955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4201938..4202044 /note="source:INTACT711_F307_scaffold_9-int 1888 1986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4202052..4202674 /note="source:CACAO_M_S_E19555_F4_scaffold_3 1 623" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4202667..4204647 /note="source:CACAO_M_E42343_F106_scaffold_5 10680 12664" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4204651..4204846) /note="source:CACAO_M_E23991_F4_scaffold_4 16808 16996" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4206143..4206292) /note="source:CACAO_on_E22_A_scaffold_2 4867 5020" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 4207949..4216404 /locus_tag="TCM_027460" /note="dbxref CacaoGD:Thecc1EG027460" mRNA join(4207949..4208262,4211706..4211736,4212087..4212179, 4212259..4212321,4212707..4212818,4213033..4213118, 4213773..4213831,4213922..4214024,4214121..4214181, 4215308..4215390,4215479..4215559,4215883..4216402) /locus_tag="TCM_027460" /product="Low PSII Accumulation 3 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30131.m006855" /inference="similar to AA sequence:ricco:30131.m006855" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01978t00001; inference alignment:Newbler:10:TSA:cgbaL_g01978t00001" CDS join(4207949..4208262,4211706..4211736,4212087..4212179, 4212259..4212321,4212707..4212818,4213033..4213118, 4213773..4213831,4213922..4214024,4214121..4214181, 4215308..4215390,4215479..4215559,4215883..4215942) /locus_tag="TCM_027460" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30131.m006855" /codon_start=1 /product="Low PSII Accumulation 3 isoform 1" /protein_id="EOY26063.1" /db_xref="TAIR:AT1G73060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9X9" /translation="MAMTFMALSFSSPLSIYPPRPAFIPLHLPSHHFPTLSPKHRISI QCATRDNTEANPPAASTQSYDPKKGVPLYKPKSYDVLVTDAANSLAFALQDGKTRLEI DFPPLPSNISSYKGSSDEFIDANIQLALAVVRKLQQKREARACIVFPDKPEKRRASQL FKTALDSIDGISIGSLDDVPSGAVTTFFKSIKNTLDFDFQDENEGRWEPKEPPTLYIF INCSTRELSVIEKYVEMYALSTPTLLFNLELDTLRADLGLLGFPPKDLHYRFLSQFIP AFYIRIREYSKTVAVAPFVVNYSGALFRQYPGPWQVMLKQSDGSYACVAESATRFTLG ETKEELLRVLGLQEEQGSQLEFLRRGYKTSTWWEEDVDLEASSAWRS" mRNA join(<4208017..4208262,4211706..4211736,4212087..4212179, 4212259..4212321,4212707..4212818,4213033..4213118, 4213773..4213831,4213922..4214024,4214121..4214180, 4215881..4216404) /locus_tag="TCM_027460" /product="Low PSII Accumulation 3 isoform 6" /inference="alignment:exonerate- protein:2:ricco:30131.m006855" /inference="similar to AA sequence:Phytozome:POPTR_0001s03560.1" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1022t10; inference alignment:Newbler:10:TSA:cgbaL_g01978t00001" mRNA join(<4208017..4208262,4211706..4211736,4212087..4212179, 4212259..4212321,4212707..4212818,4213033..4213118, 4213773..4213831,4213922..4214024,4214125..4214181, 4215308..4215390,4215479..4215557) /locus_tag="TCM_027460" /product="Low PSII Accumulation 3 isoform 4" /inference="alignment:exonerate- protein:2:ricco:30131.m006855" /inference="similar to AA sequence:Phytozome:POPTR_0001s03560.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1022t3; inference alignment:Newbler:10:TSA:cgbaL_g01978t00001" mRNA join(<4208017..4208262,4211706..4211736,4212087..4212179, 4212259..4212321,4212707..4212818,4213033..4213118, 4213773..4213831,4213922..4214024,4215308..4215390, 4215479..4215557) /locus_tag="TCM_027460" /product="Low PSII Accumulation 3 isoform 5" /inference="alignment:exonerate- protein:2:ricco:30131.m006855" /inference="similar to AA sequence:Phytozome:POPTR_0001s03560.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1022t2; inference alignment:Newbler:10:TSA:cgbaL_g01978t00001" CDS join(<4208018..4208262,4211706..4211736,4212087..4212179, 4212259..4212321,4212707..4212818,4213033..4213118, 4213773..4213831,4213922..4214024,4214121..4214180, 4215881..4215946) /locus_tag="TCM_027460" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Low PSII Accumulation 3 isoform 6" /protein_id="EOY26068.1" /db_xref="Phytozome:POPTR_0001s03560.1" /db_xref="TAIR:AT1G73060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9X9" /translation="IPLHLPSHHFPTLSPKHRISIQCATRDNTEANPPAASTQSYDPK KGVPLYKPKSYDVLVTDAANSLAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDAN IQLALAVVRKLQQKREARACIVFPDKPEKRRASQLFKTALDSIDGISIGSLDDVPSGA VTTFFKSIKNTLDFDFQDENEGRWEPKEPPTLYIFINCSTRELSVIEKYVEMYALSTP TLLFNLELDTLRADLGLLGFPPKDLHYRFLSQFIPAFYIRIREYSKTVAVAPFVVNYS GALFRQYPRLPLGGKRMLTWKHLQHGVVE" CDS join(<4208018..4208262,4211706..4211736,4212087..4212179, 4212259..4212321,4212707..4212818,4213033..4213118, 4213773..4213831,4213922..4214024,4215308..4215322) /locus_tag="TCM_027460" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Low PSII Accumulation 3 isoform 5" /protein_id="EOY26067.1" /db_xref="Phytozome:POPTR_0001s03560.1" /db_xref="TAIR:AT1G73060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9X9" /translation="IPLHLPSHHFPTLSPKHRISIQCATRDNTEANPPAASTQSYDPK KGVPLYKPKSYDVLVTDAANSLAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDAN IQLALAVVRKLQQKREARACIVFPDKPEKRRASQLFKTALDSIDGISIGSLDDVPSGA VTTFFKSIKNTLDFDFQDENEGRWEPKEPPTLYIFINCSTRELSVIEKYVEMYALSTP TLLFNLELDTLRADLGLLGFPPKDLHYRFLSQFIPAFYIRIREYSKDLGR" CDS join(<4208018..4208262,4211706..4211736,4212087..4212179, 4212259..4212321,4212707..4212818,4213033..4213118, 4213773..4213831,4213922..4214024,4214125..4214127) /locus_tag="TCM_027460" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Low PSII Accumulation 3 isoform 4" /protein_id="EOY26066.1" /db_xref="Phytozome:POPTR_0001s03560.1" /db_xref="TAIR:AT1G73060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9X9" /translation="IPLHLPSHHFPTLSPKHRISIQCATRDNTEANPPAASTQSYDPK KGVPLYKPKSYDVLVTDAANSLAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDAN IQLALAVVRKLQQKREARACIVFPDKPEKRRASQLFKTALDSIDGISIGSLDDVPSGA VTTFFKSIKNTLDFDFQDENEGRWEPKEPPTLYIFINCSTRELSVIEKYVEMYALSTP TLLFNLELDTLRADLGLLGFPPKDLHYRFLSQFIPAFYIRIREYSK" mRNA join(<4208021..4208262,4211706..4211736,4212087..4212179, 4212259..4212321,4212707..4212818,4213033..4213118, 4213773..4213831,4213922..4214024,4214121..4214181, 4215308..4215390,4215479..4215559,4215883..4215990, 4216105..4216404) /locus_tag="TCM_027460" /product="Low PSII Accumulation 3 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30131.m006855" /inference="similar to AA sequence:Phytozome:POPTR_0001s03560.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc973t5; inference alignment:Newbler:10:TSA:cgbaL_g01978t00001" CDS join(<4208021..4208262,4211706..4211736,4212087..4212179, 4212259..4212321,4212707..4212818,4213033..4213118, 4213773..4213831,4213922..4214024,4214121..4214181, 4215308..4215390,4215479..4215559,4215883..4215942) /locus_tag="TCM_027460" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Low PSII Accumulation 3 isoform 3" /protein_id="EOY26065.1" /db_xref="Phytozome:POPTR_0001s03560.1" /db_xref="TAIR:AT1G73060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9X9" /translation="PLHLPSHHFPTLSPKHRISIQCATRDNTEANPPAASTQSYDPKK GVPLYKPKSYDVLVTDAANSLAFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDANI QLALAVVRKLQQKREARACIVFPDKPEKRRASQLFKTALDSIDGISIGSLDDVPSGAV TTFFKSIKNTLDFDFQDENEGRWEPKEPPTLYIFINCSTRELSVIEKYVEMYALSTPT LLFNLELDTLRADLGLLGFPPKDLHYRFLSQFIPAFYIRIREYSKTVAVAPFVVNYSG ALFRQYPGPWQVMLKQSDGSYACVAESATRFTLGETKEELLRVLGLQEEQGSQLEFLR RGYKTSTWWEEDVDLEASSAWRS" mRNA join(<4208214..4208262,4211706..4211736,4212087..4212179, 4212259..4212321,4212707..4212818,4213033..4213118, 4213773..4213831,4213922..4214024,4214121..4214181, 4215308..4215390,4215479..4215559,4215744..4215990, 4216105..4216133) /locus_tag="TCM_027460" /product="Low PSII Accumulation 3 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30131.m006855" /inference="similar to AA sequence:ricco:30131.m006855" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc991t3; inference alignment:Newbler:10:TSA:cgbaL_g01978t00001" CDS join(<4208216..4208262,4211706..4211736,4212087..4212179, 4212259..4212321,4212707..4212818,4213033..4213118, 4213773..4213831,4213922..4214024,4214121..4214181, 4215308..4215390,4215479..4215559,4215744..4215824) /locus_tag="TCM_027460" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30131.m006855" /codon_start=1 /product="Low PSII Accumulation 3 isoform 2" /protein_id="EOY26064.1" /db_xref="TAIR:AT1G73060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9X9" /translation="AFALQDGKTRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVV RKLQQKREARACIVFPDKPEKRRASQLFKTALDSIDGISIGSLDDVPSGAVTTFFKSI KNTLDFDFQDENEGRWEPKEPPTLYIFINCSTRELSVIEKYVEMYALSTPTLLFNLEL DTLRADLGLLGFPPKDLHYRFLSQFIPAFYIRIREYSKTVAVAPFVVNYSGALFRQYP GPWQVMLKQSDGSYACVAESATRFTLGETKEELLRVLGLQEEQGSQLEFLRRGYKKLG SHLAWDYSKTHIYFGNIALIERT" gene complement(4216560..4223593) /locus_tag="TCM_027461" /note="dbxref CacaoGD:Thecc1EG027461" mRNA complement(join(4216560..4217835,4218305..4218541, 4219247..4219358,4219758..4220071,4220783..4220995, 4221931..4222516,4223311..4223593)) /locus_tag="TCM_027461" /product="Cyclic nucleotide gated channel 8" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g02560.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037043t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s18120.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.36 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc3442t1" CDS complement(join(4217098..4217835,4218305..4218541, 4219247..4219358,4219758..4220071,4220783..4220995, 4221931..4222516,4223311..4223369)) /locus_tag="TCM_027461" /note="paralog of Thecc1EG037043t1" /codon_start=1 /product="Cyclic nucleotide gated channel 8" /protein_id="EOY26069.1" /db_xref="Phytozome:POPTR_0003s18120.1" /db_xref="TAIR:AT1G19780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82226" /translation="MFDCAYKSQLIGGQKEKFVRLDDLDSTMSMQSGTGVMKKCRFNI EGLTFGGRGKKNASKSFRMGMKRGSEGLLTFGRSLRSGVTRAVFPEDLKVSDKMIIDP QDRSLLLWNKFFVVSCILSVAVDPLFFYLPVFNHVSNCLGIDVKLGVTTTTIRTIIDT FYLIRMGLQFRTAYIAPSSRVFGRGELVIDPAQIATRYLSRYFIVDFLSVLPLPQIVV WRFLHRSKGSEVWATKQALLLIVFIQYVPRFVRFIPLTSELKKTAGTFAEGAWSGAAY YLLWYMLASHIVGAFWYLLAVERNDTCWRNACIGSGKCNIDFLYCGNKHMQGYADWRM VSENILGSKCSGIDDHDQPSPFNYGIYTQAIQSGTVSSNIFFTKFCYCLWWGLQNLST LGQGLITSTYPGEVLFSIAIAIFGLILFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQ WMHHRALPQDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDIKRHLCLNLVRRV PLFANMDERLLDAICERLKPSLYTEHTYIVREGDPVNEMLFIIRGRLESVTTDGGRSG FFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALSEVEAFALEAEELTFVSS QFRRLHSRQVQHTFRFYSQQWRTWAACFIQTAWRKYSRRKIVELRRKEEEELDYDEKH DDEMALVEQRHNSAESYSLGATIFASRFAANVRGNKNRGTTSPKSLMKLPKPPEPNFN DPDTDELGHKID" gene complement(4225636..4228463) /locus_tag="TCM_027462" /note="dbxref CacaoGD:Thecc1EG027462" mRNA complement(4225636..4228463) /locus_tag="TCM_027462" /product="Pentatricopeptide repeat (PPR) superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g21420.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021403001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage" CDS complement(4226360..4228291) /locus_tag="TCM_027462" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein, putative" /protein_id="EOY26070.1" /db_xref="Phytozome:GSVIVT01021403001" /db_xref="TAIR:AT3G14730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ASX4" /translation="MNKRAIFPKPSINKRNNKPKSLCPFCCSSSKFSSSSSPTPQRYT LSTCIASIQSCFHQKNLTGGKQLHAYMLRNGFLQASPASLTSLINMYSKCNQMTHALS LFQTTIQNPNIFSFNAIISGFVTNEDPLKGLNFYREMRVLGVLPDKYTFPCLLKGCCD IMEVLEVRKIHGLVFKLSLDLDLYVGSGLVKCYLKFLFTEDAEKVFDELLVRDVVLWN AMVNGYAQVGRFDEALGMFRKMCLEGVEMSSFTVTGVLSVFAMIGDFENGRAVHGVVM KMGYDSSITVSNALIDMYGKCKFVGEALEIFKMMAERDIFSWNSIMSVHVQCGDHDET LRLFGRMLRDGIRPDLITLTTVFPSCTQMAALMHGRVIHGYMIINGLSKDGNSEDIGD VLINNGIMDMYAKCGSMREAYLVFDKMSHKDVASWNILIMGYGMHGFGSEALDMFSLM CESDFKPDDVTFVGVLSACSHGGFVSLGRQILGQMKSRYGVVPTIEHYTCVVDMLGRA GQLEEAYQLALTSPTEANAVVWRALLAACRLHGNSDMAEVAAKHVFQLEPEHCGSYVL MSNVYVAAGKYEEVLDVRNMMRQQNVRKLPGCSWIELKNGVHAFINGDCTHPGSSSIY DGLHSLTALLHEHDYVPDL" mobile_element complement(4228825..4228897) /note="source:CACAO_M_E14113_F106_scaffold_3 13792 13866" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4230014..4230124 /note="source:scaffold_2_CACTA_0252 8743 8851" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4230039..4230125) /note="source:CACAO_on_E329_A_scaffold_147 4314 4401" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4230040..4230136 /note="source:CACAO_on_E390_scaffold_1 847 956" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4231415..4232333) /note="source:scaffold_4_CACTA_0511 12928 13839" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4232400..4233343) /note="source:scaffold_4_CACTA_0511 12874 13824" /mobile_element_type="transposon:TIR/CACTA" gene 4238338..4241401 /locus_tag="TCM_027463" /note="dbxref CacaoGD:Thecc1EG027463" mRNA 4238338..4241401 /locus_tag="TCM_027463" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s18130.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s18130.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1431t2" CDS 4238636..4240801 /locus_tag="TCM_027463" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY26071.1" /db_xref="Phytozome:POPTR_0003s18130.1" /db_xref="TAIR:AT1G80870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGL8" /translation="MPSRPLPPGPNLPRPSFISKTRVIFLILTISSSVVILFTIIYFL YHLWNSLSNRARTIPFDSSAPLKLQRFCYKELKNATNDFDDANIIGKGGSGTVFRGIV RDGKLFAIKRLDTVSLQTEREFQNELQILGGLRSPFLVTLLGYCVEKNKRLLVYEYMP NKSLQESLFGDGHLSLNWQRRFDVIVDVAKALEFLHFGCDPPVIHGDIKPSNVLLDSD FRAKISDFGLSRIKVEGEFGVDFFSQDLGRSQELWKSQELSGNLGGTTGEQTPAIGTP VDSNNNEVDFALALQASSSSKNSKKCYNVKALNLNSFNYNANIASESDCKVGNNGKGK EVTGVDIAGDDWNTKCVPYDDEFGSIDHSKELNSSASLGVDEAANTKQWGKDWWWRQD GSGELCSKDYVMEWIGSQICPSNPDWDDEKKATPEKIELDNSTQLEKLDDVNEPQVQG LGFEALDKGFEKKEPKGRKNRKKKHRKMQEWWKDEHLGEISKKDSKLKQLKTKWKKGF KMPYFDLGRRFYFHRRKKFGEPNQDDCDANGEFSFRRGWRRKNNNSVGSDMWSGDLFS RELSSTTSMRGTLCYVAPEYNGCGYLMEKADIYSLGVLILVIVSGRRPLHVLASPMRL EKANLISWCRQLAQSGNVLELVDERLKDDYNKEQASLCINLALSCLQKMPELRPDIGE IVRILKGEMDLPPIPFEFSPSPPSKLYSRSRRKQKANAE" gene complement(4243978..4254155) /locus_tag="TCM_046826" /note="dbxref CacaoGD:Thecc1EG046826" mRNA complement(join(4243978..4244890,4253934..4254155)) /locus_tag="TCM_046826" /product="Early nodulin-like protein 17 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g02500.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s18150.1" /note="transcript variant 2; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03103t00002" CDS complement(join(4244544..4244890,4253934..4254099)) /locus_tag="TCM_046826" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Early nodulin-like protein 17 isoform 2" /protein_id="EOY26073.1" /db_xref="Phytozome:POPTR_0003s18150.1" /db_xref="TAIR:AT5G15350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVL7" /translation="MLSSTSNQLILLSFVLIFGTVTATDHIVGANKGWNPGINYTLWA NNHTFYVGDLISFRYQKNQYNVFEVNQTGYDNCTTEGALGNWSSGKDFIPLNESKRYY FICGNGQCFNGMKVSVLVHPLPSPAASPVANHTSNSSAAAPIVLPGGVVGLRALVVAL ASIWFGSGWI" mobile_element complement(4248144..4248262) /note="source:scaffold_4_CACTA_0482 17198 17309" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4248366..4248459 /note="source:CACAO_M_S_E90022_F9_scaffold_8 3100 3166" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4248372..4248469) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3085 3156" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4248442..4248705) /note="source:scaffold_4_CACTA_0482 16794 17064" /mobile_element_type="transposon:TIR/CACTA" gene complement(4249756..>4259880) /locus_tag="TCM_046827" /note="dbxref CacaoGD:Thecc1EG046827" mRNA complement(join(4249756..4250014,4255303..4256020, 4256160..4256336,4256480..4256610,4256757..4256935, 4257214..4257349,4259849..>4259880)) /locus_tag="TCM_046827" /product="12-oxophytodienoate reductase 2 isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046825t1" /inference="similar to AA sequence:ricco:29907.m000654" /note="transcript variant 2; alternatively spliced; quality class is strong, annoterr is 1; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc503t11" gene complement(4250004..>4251969) /locus_tag="TCM_046825" /note="dbxref CacaoGD:Thecc1EG046825" mRNA complement(join(4250004..4250733,4250868..4251044, 4251189..4251319,4251466..4251606,4251902..>4251969)) /locus_tag="TCM_046825" /product="12-oxophytodienoate reductase 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g44600.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027467t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s10180.1" /note="quality class is strongpartial-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3142t1" CDS complement(join(4250135..4250733,4250868..4251044, 4251189..4251319,4251466..4251606,4251902..>4251969)) /locus_tag="TCM_046825" /note="paralog of Thecc1EG027467t1" /codon_start=1 /product="12-oxophytodienoate reductase 2" /protein_id="EOY26076.1" /db_xref="Phytozome:POPTR_0013s10180.1" /db_xref="TAIR:AT1G76690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYB8" /translation="QEYITTQPLLTPYKFGKFNLSHRVVLAPLTRQRSYNNVPQPHAI LYYSQRTSRGGFMISEATGVSDTAQGYAHTPGIWTKEQVEAWKPIVDAVHAKGGIIFC QIWHVGRVSNYGFQPNGQAPISSTDKSLTPQIRANGVDVAQFSPPRRLRTDEIPQIVN DFRTAARNAMEAGFDGVEIHGAHGYLIDQFLKDQVNDRTDEYGGSLENRCRFALEIVE AVANEIGADRVGIRLSPFTDFIEAVDSDPKALALYMVEALNKYGILYCHMIEPRLKMM GDVSEGPHTLLPMRKAFNGTFIAAGGYTKEDGNKAVAENRADLVAYGRLFLANPDLPR RFELNAPLNKYDRKTFYTSDPVIGYTDYPFLEANGDA" mRNA complement(join(4253216..4253618,4253934..4254155)) /locus_tag="TCM_046826" /product="Early nodulin-like protein 17 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g02500.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s18150.1" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3138t2" CDS complement(join(4253272..4253618,4253934..4254099)) /locus_tag="TCM_046826" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Early nodulin-like protein 17 isoform 1" /protein_id="EOY26072.1" /db_xref="Phytozome:POPTR_0003s18150.1" /db_xref="TAIR:AT5G15350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVL7" /translation="MLSSTSNQLILLSFVLIFGTVTATDHIVGANKGWNPGINYTLWA NNHTFYVGDLISFRYQKNQYNVFEVNQTGYDNCTTEGALGNWSSGKDFIPLNESKRYC FICGNGQCFNGMKVSVLVHPLPSPAASPVANHTSNSSAAAPVVLPGGVVGLRALVVAL ASIWFGSGWV" mRNA complement(join(4255139..4256020,4256160..4256336, 4256480..4256610,4256757..4256897,4257208..4257440)) /locus_tag="TCM_046827" /product="12-oxophytodienoate reductase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s10180.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046825t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s10180.1" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00001t00029; inference alignment:Newbler:10:TSA:cgbaP2_g00001t00029" CDS complement(join(4255506..4256020,4256160..4256336, 4256480..4256610,4256757..4256935,4257214..4257349, 4259849..>4259880)) /locus_tag="TCM_046827" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29907.m000654; paralog of Thecc1EG046825t1" /codon_start=1 /product="12-oxophytodienoate reductase 2 isoform 2" /protein_id="EOY26075.1" /db_xref="TAIR:AT1G76690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYB8" /translation="ALCLPYLKLTEYPKPKVSKSVSFRYGRQKANPTTTARKYHHSTS SHSLQIWQIQPFHLPLSFSSSFFPRVVLAPLTRQRSYNNVPQPDAILYYSQRTSRGGF MISEATGVSDTAQGYAHTPGIWTKEQVEAWKPIVDAVHAKGGIIFCQIWHVGRVSNYG FQPNGQAPISSTDKSLTPQIQANGVDVAQFSPPRRLRTDEIPQIVNDFRIAARNAMEA GFDGVEIHGFNGYLIDQFLNDQVNDRTDEYGGSLVNRCRFALEIVEAVANEIGADRVG IRLSPFTDFIEAVDSDPKALALYMVEALNKYGILYCHMIEPRLKMMGDVSECPHTLPP MRKAFNGTFIAAGDYTKEDGNKAVAENRADLVAYGRLFLANPDLPRLFELNAPLN" CDS complement(join(4255506..4256020,4256160..4256336, 4256480..4256610,4256757..4256897,4257208..4257308)) /locus_tag="TCM_046827" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046825t1" /codon_start=1 /product="12-oxophytodienoate reductase 2 isoform 1" /protein_id="EOY26074.1" /db_xref="Phytozome:POPTR_0013s10180.1" /db_xref="TAIR:AT1G76690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYB8" /translation="MEGKKQTQQQQQENITTQPLLTPYKFGKFNLSHRVVLAPLTRQR SYNNVPQPDAILYYSQRTSRGGFMISEATGVSDTAQGYAHTPGIWTKEQVEAWKPIVD AVHAKGGIIFCQIWHVGRVSNYGFQPNGQAPISSTDKSLTPQIQANGVDVAQFSPPRR LRTDEIPQIVNDFRIAARNAMEAGFDGVEIHGFNGYLIDQFLNDQVNDRTDEYGGSLV NRCRFALEIVEAVANEIGADRVGIRLSPFTDFIEAVDSDPKALALYMVEALNKYGILY CHMIEPRLKMMGDVSECPHTLPPMRKAFNGTFIAAGDYTKEDGNKAVAENRADLVAYG RLFLANPDLPRLFELNAPLN" gene 4259714..4262095 /locus_tag="TCM_027467" /note="dbxref CacaoGD:Thecc1EG027467" mRNA join(4259714..4259965,4260264..4260404,4260551..4260681, 4260826..4261002,4261131..4262095) /locus_tag="TCM_027467" /product="12-oxophytodienoate reductase 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s10180.1.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046825t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s10180.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00001t00029_G2" CDS join(4259865..4259965,4260264..4260404,4260551..4260681, 4260826..4261002,4261131..4261729) /locus_tag="TCM_027467" /note="paralog of Thecc1EG046825t1" /codon_start=1 /product="12-oxophytodienoate reductase 2" /protein_id="EOY26077.1" /db_xref="Phytozome:POPTR_0013s10180.1" /db_xref="TAIR:AT1G76690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYB8" /translation="MGGTKQTQQQQQENVTTQPLLTPYKFGKFNLSHRVVLAPLTRQR SYNNVPQPHAILYYSQRTSRGGFMISEATGVSDTAQGYAHTPGIWTKEQVEAWKPIVD AVHAKGGIIFCQIWHVGRVSNYGFQPNGQAPISSTDKSLTPQIRANGVDVAQFSPPRR LRTDEIPQIVNDFRTAARNAMEAGFDGVEIHGAHGYLIDQFLKDQVNDRTDEYGGSLE NRCRFALEIVEAVANEIGADRVGIRLSPFTDFIEAVDSDPKALALYMVEALNKYGILY CHMIEPRLKMMGDVSECSHTLLPMRKAFNGTFIAAGGYTKEDGNKAVAENRADLVTYG RLFLANPDLPRRFELNAPLNKYDRNTFYTSDPVIGYTDYPFLEANGDA" gene complement(4262187..4265841) /locus_tag="TCM_027468" /note="dbxref CacaoGD:Thecc1EG027468" mRNA complement(join(4262187..4264106,4265187..4265841)) /locus_tag="TCM_027468" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03510.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s03510.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc237t1" CDS complement(join(4263050..4264106,4265187..4265794)) /locus_tag="TCM_027468" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /protein_id="EOY26078.1" /db_xref="Phytozome:POPTR_0001s03510.1" /db_xref="TAIR:AT1G80880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9X4" /translation="MLMALLSLARRLQRTHSQILFPFLLHHPAAISSPSPSPSTQQLL FPSLAFHQTLFISSRTLLFTSRFSTLQSLSTQTLNYPFEFTPPAIHGPDSQEQALLHL LKRVAHFSSEAEAMASLDESGIKATQDLVYSVIGTLREEWRLAFLAFKWGEKCGNTGE NTYELMIWVLGNHRKFNMAWCLIRDLFRSSMDTRRAMFIMIDRYAAASDPCKAIQTFH TMEKFRMTPDEEAFRTLLNALCRYGYVEEAEEIMLQNKKLFPLETDGFNIVLNGWCNI LVDVVEAKRVWREMSKYCIMPNGTSYTHMISCFSKDGNLFDSLRLYNEMKKRGWDPGI EVYKSLVYVLTRENCLNEAQNILKKMKETGLQPDSATYNSMIRPLCEAEKLEEARNIL STMKEENLSPTIETYHAFLHGVGFEGTLEVFNRMKVANLGPTRDTFLLVLGKFFKMEQ PEQALKIWAEMKHFEVLPDSSHYIALVEGLVTSGWLDKAREYYDEMRSYGFWDDPKLK KQLEEPKQCSGSKRQRGPREGKRSKKVNLWKGNKVRRKEEVNANKK" gene 4266622..4269170 /locus_tag="TCM_027469" /note="dbxref CacaoGD:Thecc1EG027469" mRNA join(4266622..4266883,4268876..4269170) /locus_tag="TCM_027469" /product="GAG1At protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G80890.1" /inference="similar to AA sequence:TAIR:AT1G16000.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15851t1" CDS join(4266709..4266883,4268876..4268955) /locus_tag="TCM_027469" /codon_start=1 /product="GAG1At protein" /protein_id="EOY26079.1" /db_xref="TAIR:AT1G16000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P93048" /translation="MGNEAKTTPTTASGSNVGGGGFRARMEHYIYSGEKKHVMAGIAI IAVVFGAPWFLMNRGTKHQSHQDYLEKADKARSQRLSSSK" mobile_element 4270771..4278445 /note="source:INTACT806_F20_scaffold_6-int 1 7675" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4280020..4280492) /note="source:CACAO_on_E22_A_scaffold_2 4551 5022" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(4280228..4282273) /locus_tag="TCM_027473" /note="dbxref CacaoGD:Thecc1EG027473" mRNA complement(join(4280228..4280759,4280840..4280887, 4280984..4281331,4281473..4281601,4281686..4282273)) /locus_tag="TCM_027473" /product="Magnesium transporter, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g025720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027476t1" /inference="similar to AA sequence:ricco:30131.m006875" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc742t4" CDS complement(join(4280529..4280759,4280840..4280887, 4280984..4281331,4281473..4281601,4281686..4282204)) /locus_tag="TCM_027473" /note="dbxref ricco:30131.m006875; paralog of Thecc1EG027476t1" /codon_start=1 /product="Magnesium transporter, putative" /protein_id="EOY26080.1" /db_xref="TAIR:AT1G16010.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVM0" /translation="MAESALPENNGDHAVPKIKLGGGFYYLHNRRLGQGPRNWIRVDA LGNSQVIEVDKLTMKHHCDLPARDIRLLDPLLVYPSTILAREKAIVVNMEQIRCIITA DEFLLLNSRDSYVLQHVEELQRRLKSGVGDDQIRQAGGPDDVLGRAYFELPFEFKVLE VALEVVCALLDSQVTNHELEVYPLLDALTSKVTTINLERVRILKSRAVALTRRVQKVR DAIEHLMDNDDDMAEMCLTVKKKTKTKTRMESSFSGDQSSMQFRSKGPSVSAPVSPVS SPPDSGERLKHSLTTVWGRRKSMRASESTPESLEDLEVLLESYFVLIDSSLNKLTTMK EYIDDTEDFINIQLDSQRNRLIQFELLVTTTTLALAIFGTVVGVFGMNFDLPFFDDPA TFIRIVIIAGVCGIIIFSASLGFLKYKKLMPH" mobile_element complement(4282529..4283263) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17254 17965" /mobile_element_type="retrotransposon:LTR/Copia" gene 4285879..4286359 /locus_tag="TCM_027474" /note="dbxref CacaoGD:Thecc1EG027474" mRNA 4285879..4286359 /locus_tag="TCM_027474" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040499t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 4285914..4286240 /locus_tag="TCM_027474" /note="paralog of Thecc1EG040499t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26081.1" /translation="MSSHDIPRVLGGDFNVVRSQDEKLGGPINEIASSQFVEFIEELG LVDLPMSGGAFTLCNNREAATFCHLHGFLVAFKVLDSMKQLQQECLLKFISDHNAIAF ITDVTE" mobile_element complement(4287267..4288885) /note="source:INTACT785_F332_scaffold_2-int 10841 12448" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4289471..4289549 /note="source:CACAO_M_E43348_F5_scaffold_5 10560 10634" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4290776..4291340 /note="source:scaffold_10_CACTA_0137 5644 6211" /mobile_element_type="transposon:TIR/CACTA" gene complement(4291168..4294610) /locus_tag="TCM_027475" /note="dbxref CacaoGD:Thecc1EG027475" mRNA complement(join(4291168..4291464,4291831..4292122, 4292694..4292741,4292864..4293220,4293308..4293436, 4293545..4294610)) /locus_tag="TCM_027475" /product="Magnesium transporter, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb06g021670.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027476t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s03480.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS complement(join(4291892..4292122,4292694..4292741, 4292864..4293220,4293308..4293436,4293545..4294162)) /locus_tag="TCM_027475" /note="paralog of Thecc1EG027476t1" /codon_start=1 /product="Magnesium transporter, putative" /protein_id="EOY26082.1" /db_xref="Phytozome:POPTR_0001s03480.1" /db_xref="TAIR:AT1G16010.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVM0" /translation="MIDMKGKEEIPTDLWGRKMAKLKNTSNIYMHCNISNTLYIDALC ELSASTSTFPFQGMDVLEFPETGQGLRSWIRVDASANSQALEIDKLTIIRRCGISTRD LRILDPLFVYPPTILGREKAIVANLEKMRCIITADEVLLLNSLDRNVLQYVMELQKRL RSTGVAELNPGGSGSRSFRSTSSYSPFEFRALAVVLDVVSGSLDSEASELEMEAYPLL DELTSEVSTFNLERVRGLKSGLVALTRRIRKIRDEVENIMDDNEDMAEMYLTEKKRKM ESSSLISDDQSSLVGIFRSNEGASEASDPIICPPVSSPSGSRSLTKNSSSLRSRRKSM MMSSENTAKSVEELESLLEAYFVVIDSILNKLITLKQHIDDTENFLNIQLNHLRNRLI QFELLLTSATFVLAIFGIIIGIFGINFPVPLFNDSHTIKLVLIITSICGIILYCALVC FYKWRKVLLL" mobile_element complement(4292585..4292677) /note="source:scaffold_4_CACTA_0482 7634 7727" /mobile_element_type="transposon:TIR/CACTA" gene complement(4295223..4302003) /locus_tag="TCM_027476" /note="dbxref CacaoGD:Thecc1EG027476" mRNA complement(join(4295223..4295862,4296041..4296088, 4296175..4296507,4296637..4296765,4300256..4300855, 4301601..4301678,4301770..4301841,4301953..4302003)) /locus_tag="TCM_027476" /product="Magnesium transporter isoform 1" /inference="alignment:exonerate- protein:2:ricco:30131.m006875" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027473t1" /inference="similar to AA sequence:ricco:30131.m006875" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaL_g05073t00001" mRNA complement(join(4295272..4295862,4296041..4296088, 4296637..4296765,4300256..4300855,4301601..4301678, 4301770..4301981)) /locus_tag="TCM_027476" /product="Magnesium transporter 2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30131.m006875" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027475t1" /inference="similar to AA sequence:ricco:30131.m006875" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc746t9; inference alignment:Newbler:10:TSA:cgbaL_g05073t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc700t8_C2" mRNA complement(join(4295312..4295862,4296041..4296088, 4296175..4296504,4296637..4296765,4300256..4300738)) /locus_tag="TCM_027476" /product="Magnesium transporter isoform 3" /inference="alignment:exonerate- protein:2:ricco:30131.m006875" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027473t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s03480.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01445t00002; inference alignment:Newbler:10:TSA:cgbaL_g05073t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc746t4" CDS complement(join(4295632..4295862,4296041..4296088, 4296637..4296765,4300256..4300843)) /locus_tag="TCM_027476" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30131.m006875; paralog of Thecc1EG027475t1" /codon_start=1 /product="Magnesium transporter 2 isoform 2" /protein_id="EOY26084.1" /db_xref="TAIR:AT1G16010.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVM0" /translation="MADLKERLLPPKPQSAVNLRDASYRASASGRQPFQGMDLLGLKK RGQGLRSWIRVDTSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAI VVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLTSGVGEVWQSEGPELNRRRSS RSFDNSFGSTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTL NLERVRRLKSRLVALTRRVQKLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVV AIFGVVAGIFGMNFAIPLFDDPGAFKWVLIVTGICGIIIFCAFVWFFKYRRLMPL" CDS complement(join(4295632..4295862,4296041..4296088, 4296175..4296507,4296637..4296765,4300256..4300843)) /locus_tag="TCM_027476" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30131.m006875; paralog of Thecc1EG027473t1" /codon_start=1 /product="Magnesium transporter isoform 1" /protein_id="EOY26083.1" /db_xref="TAIR:AT1G16010.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVM0" /translation="MADLKERLLPPKPQSAVNLRDASYRASASGRQPFQGMDLLGLKK RGQGLRSWIRVDTSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAI VVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLTSGVGEVWQSEGPELNRRRSS RSFDNSFGSTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTL NLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMESSFYGDQSL MGFRSIDGLSISAPVSPVSSPPETRRLEKSLSIARSRHESMRSSESTTESIEELEMLL EAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGV VAGIFGMNFAIPLFDDPGAFKWVLIVTGICGIIIFCAFVWFFKYRRLMPL" CDS complement(join(4295632..4295862,4296041..4296088, 4296175..4296504,4296637..4296765,4300256..4300735)) /locus_tag="TCM_027476" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG027473t1" /codon_start=1 /product="Magnesium transporter isoform 3" /protein_id="EOY26085.1" /db_xref="Phytozome:POPTR_0001s03480.1" /db_xref="TAIR:AT1G16010.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVM0" /translation="MDLLGLKKRGQGLRSWIRVDTSGNSQIIEVDKFTMMRRCDLPAR DLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRR LTSGVGEVWQSEGPELNRRRSSRSFDNSFGSTSPDYLPFEFRALEVALEAACTFLDSQ AAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKRDEIEQLMDDDGDMA EMYLTEKKSRMESSFYGDQSLMGFRSIDGLSISAPVSPVSSPPETRRLEKSLSIARSR HESMRSSESTTESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRN QLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPLFDDPGAFKWVLIVTGICGIIIFCA FVWFFKYRRLMPL" mobile_element complement(4303102..4303146) /note="source:CACAO_M_E5899_F5_scaffold_2 20754 20797" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4303163..4304463) /locus_tag="TCM_027477" /note="dbxref CacaoGD:Thecc1EG027477" mRNA complement(4303163..4304463) /locus_tag="TCM_027477" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.17 coverage" CDS complement(4304074..4304355) /locus_tag="TCM_027477" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26086.1" /translation="MGLGKEYANTTKALGVGTLKSIFILRQGTMHLNFPVAIAFTEMS CDINTVFASIYTIIAHMKTLISGRYPSFVIVSWSQLKALNLTYTIFNWR" gene complement(4304515..4305963) /locus_tag="TCM_027478" /note="dbxref CacaoGD:Thecc1EG027478" mRNA complement(join(4304515..4304924,4305426..4305494, 4305614..4305963)) /locus_tag="TCM_027478" /product="Chaperone DnaJ-domain superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g02480.1" /inference="similar to AA sequence:ricco:30131.m006876" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15690t2" CDS complement(join(4304742..4304924,4305426..4305494, 4305614..4305817)) /locus_tag="TCM_027478" /note="dbxref ricco:30131.m006876" /codon_start=1 /product="Chaperone DnaJ-domain superfamily protein" /protein_id="EOY26087.1" /db_xref="TAIR:AT1G80920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVM1" /translation="MASAVGMIGRNGSSSWMQVKGKGKKKTVNRVRVRCSASSVMDPY KTLRIQRGASESEVKKAFRQLALQYHPDVCRGSNCGVQFQTINEAYDIVMSNFRGESN ESRMYEAYDEGIDEPMRGMDDPDWDMWEEWMGWEGAGIRDYSSHINPYI" mobile_element 4307926..4308102 /note="source:INTACT51_F23_scaffold_9-int 1269 1450" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4309253..4311561 /note="source:INTACT51_F23_scaffold_9-int 3135 5444" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4311611..4311973 /note="source:INTACT51_F23_scaffold_9-int 5438 5811" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4312467..4313132) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17247 17943" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4315668..4315740) /note="source:scaffold_10_CACTA_0137 6936 7010" /mobile_element_type="transposon:TIR/CACTA" gene 4316918..4320569 /locus_tag="TCM_027481" /note="dbxref CacaoGD:Thecc1EG027481" mRNA join(4316918..4318224,4318442..4318585,4318673..4318766, 4319652..4319751,4320185..4320569) /locus_tag="TCM_027481" /product="F-box/RNI-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s00590.1" /inference="similar to AA sequence:TAIR:AT3G59200.1" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(4317328..4318224,4318442..4318585,4318673..4318766, 4319652..4319751,4320185..4320419) /locus_tag="TCM_027481" /codon_start=1 /product="F-box/RNI-like superfamily protein" /protein_id="EOY26088.1" /db_xref="TAIR:AT3G59200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BLF6" /translation="MAKLVKHEGNNIDRLSGLPDSIISHILSLLPTKYAVRTSVLSTR WRFLSTSVSTLDFYDYENPSERFMNFVDRVLLFHNAACIKRFRLICGGFHEDVDAYRI CGWISFALRQRLQELYLEIRIGDPRGMLPASLFRNKTLTKLELDVSKFVMTIPTKVCL PSLKSLHLDCLEFVDDDSVRRLFSSCPVLEDLFICSCLWRNVRELNISNPSLKRLTLN LFGDCGRLSHVVIDAPNLVYFKFYGTLLERYSLVNLHPLVKVDMRNLVNLGEKLVNQD AAINFFNGISNVRSLYCNDDLLWHLNLCNKPVPVFHNLVHVEIRRKCLRQKTGLAELL ECSINLETLIVHNGAFGDLFWHRPEKKPFCLLSHLKVIEIYSFGDSTISPHCSGLGEI KQMAATFTRGAHTINSIFSKPTIRKYCSKGSSCGDTLREPMKLEAEEVKKKSTGGHHD GSCWVPHDRTGIYYPKGQEKVMADVPAAAGRDTQINWFS" mobile_element complement(4320979..4321365) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17429 17856" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4322547..4323041 /note="source:CACAO_M_E4753_F17_scaffold_2 7237 7799" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4324031..4327655 /locus_tag="TCM_027482" /note="dbxref CacaoGD:Thecc1EG027482" mRNA join(4324031..4324313,4324657..4324715,4324956..4325030, 4325125..4325241,4325391..4325461,4325720..4326017, 4326129..4326418,4327071..4327210,4327392..4327655) /locus_tag="TCM_027482" /product="ALA-interacting subunit 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s02040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033583t5" /inference="similar to AA sequence:Phytozome:POPTR_0017s02040.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc969t4" mobile_element 4324131..4324194 /note="source:INTACT289_F14_scaffold_4-int 1378 1440" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(4324196..4324313,4324657..4324715,4324956..4325030, 4325125..4325241,4325391..4325461,4325720..4326017, 4326129..4326418,4327071..4327131) /locus_tag="TCM_027482" /note="paralog of Thecc1EG033583t5" /codon_start=1 /product="ALA-interacting subunit 1" /protein_id="EOY26089.1" /db_xref="Phytozome:POPTR_0017s02040.1" /db_xref="TAIR:AT3G12740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTW0" /translation="MEMDTNGAGTSSAAAGGGGVSTSTSDSSSAAKRNSKKPKYSRFT QQELPACKPILTPGLVITTFTIIGIIFIPIGLVSLSASEHVVEIVDRYDEGCVPPNYS KNKLAYIQSSLTNKSCTRTLNVPKLMKSPVFIYYQLDNFYQNHRRYVKSRSDKQLRSK AYERDTKSCDPEGFVLDGPIVPCGLIAWSLFNDTYGFSVKSKMLEVNKKNIAWDSDKE HKFGSDVYPKNFQSGGLIGGAKLNSSIPLSEQEDLIVWMRTAALPTFRKLYGRIEEDL QANEQITVVIQNNYNTYSFGGKKKLVLSTTSWIGGKNDFLGIAYITVGGLCLFLAVSF ILLYVIKPRPLGDPSYLSWNRSPSGHPN" mobile_element 4328488..4329666 /note="source:CACAO_M_E44463_F14_scaffold_6 1 1179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4330157..4330875 /note="source:INTACT687_F13_scaffold_3-int 1296 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4330957..4331294 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17252 17579" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4331502..4331825 /note="source:INTACT687_F13_scaffold_3-int 1672 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4332122..4332559) /note="source:INTACT785_F332_scaffold_2-int 1144 1583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4332720..4333726) /note="source:INTACT785_F332_scaffold_2-int 10905 11870" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4334482..4336121) /locus_tag="TCM_027485" /note="dbxref CacaoGD:Thecc1EG027485" mRNA complement(join(4334482..4335536,4335674..4336121)) /locus_tag="TCM_027485" /product="Retrotransposon Tto1 DNA" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021732t1" /inference="similar to AA sequence:frave:gene19691" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(4335155..4335536,4335674..4335837)) /locus_tag="TCM_027485" /note="dbxref frave:gene19691; paralog of Thecc1EG021732t1" /codon_start=1 /product="Retrotransposon Tto1 DNA" /protein_id="EOY26090.1" /translation="MDVKIAFLHGDLKKEIYMEQLKGFVIKGKENYVCKLKKNLYGWK QASRQWHKKFEIDKLKKKLGKSLAMKDLGPARQILGLQIIYDRETKKLWLSHEKYIEK VLQWFHMDKAKVISTLLTNHFRLNTRLFSSSDREKEDMQHVPYAFTVASLMYAMICTR PDIAHAIGVVSHFPSNLGKMR" mobile_element complement(4335198..4335244) /note="source:INTACT591_F264_scaffold_1-int 16851 16897" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4338308..4344682 /locus_tag="TCM_027486" /note="dbxref CacaoGD:Thecc1EG027486" mRNA join(4338308..4338550,4338740..4338969,4340250..4340479, 4340648..4340823,4343313..4343766,4344043..4344181, 4344403..4344682) /locus_tag="TCM_027486" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc380t15" CDS join(4338834..4338969,4340250..4340479,4340648..4340823, 4343313..4343658) /locus_tag="TCM_027486" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26091.1" /translation="MFPVLNNLLLVFVFAIASFGASSLMLTGGIQNEDVGRRKLVTEN PGFISIDCGANGDYHDEATGIVYRTDREFIDTGENHEVSTENGNYLSSDNLIQRQLKN LRSFPNGTRNCYTLNCNLNRLRVTPNLCLANTGSGIPFISALELPLPDISNSIYTTDF GALKHVKTYDLGISPSSPAMRYNDDVYDRIWHPYAFSNSEPIGTSQCIDDFYGLEVVL RTAVRPADGLSSLNYTMIASNSSMKYCVYSHFAEIKEIAQYQLREFSITLNDINYGSI TVHYLKPMSLRSNLQSKVM" gene 4340780..4354514 /locus_tag="TCM_027487" /note="dbxref CacaoGD:Thecc1EG027487" mRNA join(4340780..4340823,4343313..4343766,4344043..4344181, 4344403..4344474,4351815..4351883,4352118..4352278, 4352967..4353181,4353322..4353448,4354008..4354070, 4354167..4354363,4354444..4354514) /locus_tag="TCM_027487" /product="Leucine-rich repeat transmembrane protein kinase protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016947001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028924t1" /inference="similar to AA sequence:Phytozome:POPTR_0144s00240.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc323t23_C2" mobile_element complement(4340964..4341045) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3224 3318" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(4343712..4343766,4344043..4344181,4344403..4344474, 4351815..4351883,4352118..4352278,4352967..4353181, 4353322..4353448,4354008..4354070,4354167..4354315) /locus_tag="TCM_027487" /note="paralog of Thecc1EG028924t1" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase protein, putative" /protein_id="EOY26092.1" /db_xref="Phytozome:POPTR_0144s00240.1" /db_xref="TAIR:AT2G19210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NEQ3" /translation="MEIYQVLDFNGSPTDPSDVDAVVAIKHAYNISRDDWQGDPCLPK EYSWNGLNCSVGIGTPRIISLSLSSSNLTGQIPLSLSKLQALESLNKLIGWIPQSLKD KSDKGLLSLSLGGNPDLCLTDPCERRKNKFAVPIVASAVSLLALVVLLSLWIIFFRLK KGRQGESVNETKKESFKTKNRPFTYSEIASITANFNTVIGQGGFGKVYSGTLNDKTKV AVKLLSESSKQGFKQFQAEAQLLMIVHHKNLVSLVGYCDEGDNLALIYEYMANGDLRK KLSVNDANVLDWKARLQIAIDTAQGLEYLHEGIKPPIVHRDLKTANILLTEKMQAKIA DFGLSKVFMTEWSCL" mobile_element complement(4343870..4343918) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3188 3236" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4347068..4347552 /locus_tag="TCM_027488" /note="dbxref CacaoGD:Thecc1EG027488" mRNA 4347068..4347552 /locus_tag="TCM_027488" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045380t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage" CDS 4347245..4347511 /locus_tag="TCM_027488" /note="paralog of Thecc1EG045380t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26093.1" /translation="MQGDKYPPCPHYKKKNHTSKYCWYWPNVKCRSYNQLGYVEKVCK AKGANTEEKTTVVEQANAKDELLFMATVRAESKLKNIWLINSGC" gene complement(4355126..4363651) /locus_tag="TCM_027489" /note="dbxref CacaoGD:Thecc1EG027489" mRNA complement(join(4355126..4355754,4355858..4355912, 4357368..4357420,4357683..4357759,4357875..4357998, 4358534..4358659,4360065..4360218,4360685..4360793, 4361401..4361464,4362500..4362619,4363489..4363651)) /locus_tag="TCM_027489" /product="Phosphatase 2C family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036898t1" /inference="similar to AA sequence:Phytozome:Glyma08g23550.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07329t00001" CDS complement(join(4355542..4355754,4355858..4355912, 4357368..4357420,4357683..4357759,4357875..4357998, 4358534..4358659,4360065..4360218,4360685..4360793, 4361401..4361464,4362500..4362616)) /locus_tag="TCM_027489" /note="paralog of Thecc1EG036898t1" /codon_start=1 /product="Phosphatase 2C family protein" /protein_id="EOY26094.1" /db_xref="Phytozome:Glyma08g23550.2" /db_xref="TAIR:AT4G31860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SZ53" /translation="MGVYLSTPKTEKFSDDGENDRLRFGLSSMQGWRATMEDAHAAYP DLDRSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYLAGDIGTSVQKSFLRMDEMM RGQRGWRELAILGDKMDKVSGLIEGLIWSPRGGEANNHFDDWRSEEGPHSDFHGPTSG STACVAIIRNNQLVVANAGDSRCVISRKSQAYNLSKDHKPDLEVEKDRILKAGGFIQV GRVNGSLNLARAIGDAEFKQNKTLPAEKQVVTANPDINTVELCDDDEFLVLACDGIWD CMSSQQLVDFVGEQLKNESKLSAICERVFDRCLAPTAGGEGCDNMTMILVQFKKPAGS GTSSEQQPPTLTDQTPAPETDKSTLESGS" gene 4366008..4370192 /locus_tag="TCM_027490" /note="dbxref CacaoGD:Thecc1EG027490" mRNA join(4366008..4366538,4369413..4370192) /locus_tag="TCM_027490" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040126t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.53 coverage" CDS 4369561..4369899 /locus_tag="TCM_027490" /note="paralog of Thecc1EG040126t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26095.1" /translation="MAIKEARNLNTFKLDGLVGSLLTYEMTFKHGNEIDDARKKDIKK KGVTLKSTIEEDEKSTKEENEENEDIALLVKRFNKSMRKKYRGRRPPRRDGPKCENSK DHLIFYNVEN" mobile_element complement(4382211..4382577) /note="source:INTACT466_F223_scaffold_2-int 5585 5947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4385625..4385715) /note="source:scaffold_4_CACTA_0482 7636 7726" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4385736..4385983) /note="source:CACAO_M_S_E98862_F17_scaffold_8 8 177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4388638..4390208 /note="source:CACAO_M_E52278_F17_scaffold_7 1116 2728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4390479..4390526) /note="source:INTACT146F_F14_scaffold_2-int 1130 1179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4395255..4395438 /note="source:INTACT255_F60_scaffold_8-int 1 177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4395439..4396959 /note="source:CACAO_M_E44465_F17_scaffold_6 1 1521" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4396960..4396987) /note="source:CACAO_M_S_E7818_F60_scaffold_2 1512 1544" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4400063..4406481) /note="source:CACAO_M_E49885_F60_scaffold_7 2654 11753" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4406470..4406574 /note="source:CACAO_M_E3801_F60_scaffold_1 6571 6679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4406575..4417524 /note="source:INTACT162_F157_scaffold_6-int 1 10950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4417525..4418974) /note="source:CACAO_M_S_E15657_F60_scaffold_2 1030 2486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4420849..4423193) /note="source:CACAO_M_E13604_F90_scaffold_3 4674 7011" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4421104..4423477 /note="source:CACAO_M_E57816_F79_scaffold_9 411 2777" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4432149..4432228 /note="source:INTACT83_F5_scaffold_9-int 12573 12652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4436070..4436149 /note="source:INTACT83_F5_scaffold_9-int 12573 12652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4436150..4437178 /note="source:INTACT255_F60_scaffold_8-int 676 1714" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4439841..4441685 /locus_tag="TCM_027498" /note="dbxref CacaoGD:Thecc1EG027498" mRNA join(4439841..4440549,4440730..4440781,4441091..4441685) /locus_tag="TCM_027498" /product="Tubby-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006433t2" /inference="similar to AA sequence:Phytozome:Glyma15g05490.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS join(4440004..4440549,4440730..4440781,4441091..4441446) /locus_tag="TCM_027498" /note="paralog of Thecc1EG006433t2" /codon_start=1 /product="Tubby-like protein" /protein_id="EOY26096.1" /db_xref="Phytozome:Glyma15g05490.1" /db_xref="TAIR:AT1G25280.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B6U1N5" /translation="MSIFRISTSIKVELDNIQCRFLWCDSNDCKTINFVNRNTVCNLK DNGGLGIVDFNLKNSSLLDKWIWHFGEDLDYLWRKVIMERNNTHPNSLLYICLVSRNM SEVWCNVLNPHSSDDQITVIIKDDIGFIPGKGDRIKFWGDQWVNGKILKYNFPHIYAL SINKNGTLADFGCWVDNIWKWNTDGFGLSLPFSKWRFSVADQTERYPRDDDEDGKMKP LILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPDIDK IILQFGKVGKDMFTMDYRYPLSAFQAFAIYLSSFDTKLACD" mobile_element complement(4441850..4441903) /note="source:INTACT83_F5_scaffold_9-int 10278 10328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4444181..4448678) /note="source:CACAO_M_E35271_F316_scaffold_5 974 5504" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4448764..4449275) /note="source:INTACT321_F197_scaffold_2-int 139 655" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4448994..4449403 /note="source:CACAO_M_E71405_F316_scaffold_10 8293 8730" /mobile_element_type="retrotransposon:LTR/Copia" gene 4449729..4456039 /locus_tag="TCM_027499" /note="dbxref CacaoGD:Thecc1EG027499" mRNA join(4449729..4450039,4450902..4451385,4454728..4455871) /locus_tag="TCM_027499" /product="Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G48930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037027t2" /inference="similar to AA sequence:ricco:30131.m006878" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15701t1" mRNA join(4450081..4450313,4450902..4451385,4454728..4456039) /locus_tag="TCM_027499" /product="Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G48930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037027t2" /inference="similar to AA sequence:ricco:30131.m006878" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:PASA:2:TSA:puevd3b026597t1a2; alternateUTRof:Thecc1EG027499t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15701t1" CDS join(4450978..4451385,4454728..4455615) /locus_tag="TCM_027499" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30131.m006878; paralog of Thecc1EG037027t2" /codon_start=1 /product="Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase isoform 1" /protein_id="EOY26097.1" /db_xref="TAIR:AT5G48930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI78" /translation="MIVNVKESTMVRPAEETPRQSLWNSNVDLVVPRFHTPSVYFYRP TGASNFFDPQVMKEALSKALVPFYPMGGRLKRDEDGRIEIDCNGEGVLLVEAETNSVI DDFGDFAPTLELRQLIPTVDYSGGIGTYPLLVLQVTYFKCGGASLGVGMQHHAADGFS GLHFINTWSDMARGLDLTIPPFIDRTLLRARDPPQPVFHHIEYQPPPAMNTPPQSTGP ESTAVSIFKLTREQLNALKAKSKEDGNTVNYSSYEMLSGHVWRSVCKARGLAGDQGTK LYIATDGRARLRPPLPPGYFGNVIFTATPIAVAGDLLSKPTWYAAGTIHDALARMDDD YLRSALDYLELQPDLSALVRGAHTFKCPNLGITSWARLPIHDADFGWGRPIFMGPGGI PYEGLSFVLPSPTNDGSLSVAISLQAEHMKLFEKLIYDI" CDS join(4450978..4451385,4454728..4455615) /locus_tag="TCM_027499" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30131.m006878; paralog of Thecc1EG037027t2" /codon_start=1 /product="Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase isoform 1" /protein_id="EOY26098.1" /db_xref="TAIR:AT5G48930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI78" /translation="MIVNVKESTMVRPAEETPRQSLWNSNVDLVVPRFHTPSVYFYRP TGASNFFDPQVMKEALSKALVPFYPMGGRLKRDEDGRIEIDCNGEGVLLVEAETNSVI DDFGDFAPTLELRQLIPTVDYSGGIGTYPLLVLQVTYFKCGGASLGVGMQHHAADGFS GLHFINTWSDMARGLDLTIPPFIDRTLLRARDPPQPVFHHIEYQPPPAMNTPPQSTGP ESTAVSIFKLTREQLNALKAKSKEDGNTVNYSSYEMLSGHVWRSVCKARGLAGDQGTK LYIATDGRARLRPPLPPGYFGNVIFTATPIAVAGDLLSKPTWYAAGTIHDALARMDDD YLRSALDYLELQPDLSALVRGAHTFKCPNLGITSWARLPIHDADFGWGRPIFMGPGGI PYEGLSFVLPSPTNDGSLSVAISLQAEHMKLFEKLIYDI" gene complement(4456502..4457531) /locus_tag="TCM_027501" /note="dbxref CacaoGD:Thecc1EG027501" mRNA complement(join(4456502..4456781,4456885..4457102, 4457188..4457531)) /locus_tag="TCM_027501" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02871t00002" CDS complement(join(4456767..4456781,4456885..4457102, 4457188..4457329)) /locus_tag="TCM_027501" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26099.1" /translation="MMLKFFPWFMFFLCTTALSCWKLEGFPTLESPDFNLSDPAVRGQ EIHVLRHAGLNRTVGLEADGDKEVYEKKHDIFLSEKSQRGKGAYGGANIAHRPRQAKS AASSLVRPAFFLSTTVSHAISH" mobile_element 4465851..4467281 /note="source:CACAO_M_E12473_F215_scaffold_3 1 1468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4468154..4468309) /note="source:INTACT435_F214_scaffold_1-int 5282 5437" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4469068..4469448 /note="source:CACAO_M_S_E17693_F1_scaffold_3 2188 2571" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4469309..4470165 /locus_tag="TCM_027502" /note="dbxref CacaoGD:Thecc1EG027502" mRNA join(4469309..4469772,4469969..4470165) /locus_tag="TCM_027502" /product="DNA/RNA polymerases superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene03547" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035549t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc7Loc131t111" CDS join(4469504..4469772,4469969..4470032) /locus_tag="TCM_027502" /note="paralog of Thecc1EG035549t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein" /protein_id="EOY26100.1" /translation="MVGRARGRGRGNQPQQAELAEMRRMIDDLTRAVQALQRQEPVEA RMENPEGDHNPLEIHDLEDDDEFENENPFHEDGPANQAARVGLEGRRELKSNVHDKVS LKSALGST" gene 4470167..4473599 /locus_tag="TCM_027503" /note="dbxref CacaoGD:Thecc1EG027503" mRNA join(4470167..4470374,4471209..4472073,4473323..4473599) /locus_tag="TCM_027503" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene33098.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005025t1" /inference="similar to AA sequence:frave:gene24738" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc9Loc1547t1_G3" CDS join(4470239..4470374,4471209..4472073,4473323..4473338) /locus_tag="TCM_027503" /note="dbxref frave:gene24738; paralog of Thecc1EG005025t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26101.1" /translation="MGVVRLYNIEDARQYALSAEKRVLRYGARKPLYGTHWQNNSEAR RAEGSEMGIMYALVTKHLKSYQMSKSPQYPTEIQQLLKEFGELFNEDFSKSLPPLRSI QHAIDLVPGAALPNLPAYRMPPMQRAEVQRQVEELLEKGLVRESKSPCACPTLLAPKK DGSWRMCVDSRAINKITIKYRFPIPRLDEMLDQLVGSRVFSKIDLKSGYHQIRMRDGD EWKTAFKTPDGLFEWLVMPFGLSNAPSTFIRVMAEVLKPFLNSFVVVYFDDILIYSHT KEKHLKHLRQVLEVLQKEQLYINLKKCSFMQPEVVFLGFIVSAEGLKPDPEKIRAISE VEVF" gene 4473275..4474183 /locus_tag="TCM_027505" /note="dbxref CacaoGD:Thecc1EG027505" mRNA 4473275..4474183 /locus_tag="TCM_027505" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene03547" /inference="alignment:exonerate- protein:2:frave:gene16247.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005025t1" /inference="similar to AA sequence:Phytozome:Glyma19g02820.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc7Loc126t131_G4" CDS 4473280..4474158 /locus_tag="TCM_027505" /note="paralog of Thecc1EG005025t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26102.1" /db_xref="Phytozome:Glyma19g02820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BWT5" /translation="MGHFWRTLWRKFGTELKYFSTCHPQTDGQTEVVNRSLGNMLRCL IQNNPKTWDLVIPQAEFAYNNFVNRSIKKTPFEAAYGLKPQHVLDLVPLPQEARVSNE GELFADHIRKIHEEVKAALKASNAEYSFTANQHRRKQEFEEGDQVLVHLRQERFPKGT YHKLKSRKFGPCKVLKKISSNAYLIELPPELQINPIFNILDLYPFDGCDGTASTIDAQ IQHLPIAKVEVIEDVLDVKEVQSRRGNPYRRFLVKWLGIPANESTWIAEEELKRVDPD IYEEYVKAYSSESSLF" gene complement(4475484..4478791) /locus_tag="TCM_027506" /note="dbxref CacaoGD:Thecc1EG027506" mRNA complement(join(4475484..4475844,4476197..4476270, 4476621..4476697,4477327..4477383,4477613..4477649, 4477731..4477759,4478048..4478079,4478194..4478234, 4478324..4478382,4478465..4478791)) /locus_tag="TCM_027506" /product="Calcium-dependent protein kinase 23 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s21470.1" /inference="similar to AA sequence:Phytozome:Glyma04g00240.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1494t3" mRNA complement(join(4475598..4475844,4476197..4476270, 4476621..4476697,4477327..4477383,4477613..4477649, 4477731..4477759,4478048..4478079,4478212..4478234, 4478324..4478382,4478465..4478571)) /locus_tag="TCM_027506" /product="Calcium-dependent protein kinase 23 isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s21470.1" /inference="similar to AA sequence:Phytozome:Glyma04g00240.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc119t2_C2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1494t3" mRNA complement(join(4475598..4475844,4476197..4476270, 4476621..4476697,4477327..4477383,4477613..4477649, 4477731..4477753,4478048..4478079,4478194..4478234, 4478324..4478382,4478465..4478571)) /locus_tag="TCM_027506" /product="Calcium-dependent protein kinase 23 isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s21470.1" /inference="similar to AA sequence:Phytozome:Glyma04g00240.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc119t3_C2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1494t3" mRNA complement(join(4475598..4475844,4476197..4476697, 4477327..4477383,4477613..4477649,4477731..4477759, 4478048..4478079,4478194..4478234,4478324..4478382, 4478465..4478571)) /locus_tag="TCM_027506" /product="Calcium-dependent protein kinase 23 isoform 11" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s21470.1" /inference="similar to AA sequence:ricco:30122.m000345" /note="transcript variant 11; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc119t8_C2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1494t3" mRNA complement(join(4475598..4475844,4476197..4476270, 4476621..4476697,4477327..4477419,4477613..4477649, 4477731..4477759,4478048..4478079,4478194..4478234, 4478324..4478382,4478465..4478571)) /locus_tag="TCM_027506" /product="Calcium-dependent protein kinase 23 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s21470.1" /inference="similar to AA sequence:Phytozome:Glyma04g00240.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc119t4_C2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1494t3" mRNA complement(join(4475598..4475844,4476197..4476270, 4476621..4476697,4477327..4477383,4477613..4477661, 4477731..4477759,4478048..4478079,4478194..4478234, 4478324..4478382,4478465..4478571)) /locus_tag="TCM_027506" /product="Calcium-dependent protein kinase 23 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s21470.1" /inference="similar to AA sequence:Phytozome:Glyma04g00240.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc119t6_C2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1494t3" mRNA complement(join(4475710..4475844,4476197..4476270, 4476643..4476697,4477327..4477383,4477613..4477649, 4477731..4477759,4478048..4478079,4478212..4478234, 4478324..4478382,4478465..4478575)) /locus_tag="TCM_027506" /product="Calcium-dependent protein kinase 23 isoform 10" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s21470.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s21470.2" /note="transcript variant 10; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc121t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1494t3" mRNA complement(join(4475710..4475844,4476197..4476270, 4476643..4476697,4477327..4477383,4477613..4477649, 4477731..4477753,4478048..4478079,4478194..4478234, 4478324..4478382,4478465..4478575)) /locus_tag="TCM_027506" /product="Calcium-dependent protein kinase 23 isoform 9" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s21470.1" /inference="similar to AA sequence:ricco:30122.m000345" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc121t3; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1494t3" mRNA complement(join(4475710..4475844,4476197..4476270, 4476643..4476697,4477327..4477383,4477613..4477649, 4477731..4477759,4478048..4478079,4478194..4478234, 4478324..4478382,4478465..4478575)) /locus_tag="TCM_027506" /product="Calcium-dependent protein kinase 23 isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s21470.1" /inference="similar to AA sequence:ricco:30122.m000345" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc121t9; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1494t3" mRNA complement(join(4475710..4475844,4476197..4476270, 4476643..4476697,4477327..4477419,4477613..4477649, 4477731..4477759,4478048..4478079,4478194..4478234, 4478324..4478382,4478465..4478575)) /locus_tag="TCM_027506" /product="Calcium-dependent protein kinase 23 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s21470.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s21470.2" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc121t4; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1494t3" mRNA complement(join(4475710..4475844,4476197..4476270, 4476643..4476697,4477327..4477383,4477613..4477661, 4477731..4477759,4478048..4478079,4478194..4478234, 4478324..4478382,4478465..4478575)) /locus_tag="TCM_027506" /product="Calcium-dependent protein kinase 23 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s21470.1" /inference="similar to AA sequence:ricco:30122.m000345" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc121t5; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1494t3" CDS complement(join(4475825..4475844,4476197..4476270, 4476621..4476697,4477327..4477383,4477613..4477649, 4477731..4477759,4478048..4478079,4478212..4478234, 4478324..4478382,4478465..4478548)) /locus_tag="TCM_027506" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Calcium-dependent protein kinase 23 isoform 7" /protein_id="EOY26109.1" /db_xref="Phytozome:Glyma04g00240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MYY7" /translation="MEDGVILREWFGRVDSEKTGSITATQLKSAFAIGNLDFPLSVVQ QMIRMYDFDRNEFLALNKFLIKVQQAFSDLERNRGFLATDDVYEALNKIGFSLDTPAF YAACESFDQKKNGRLQLDDFISLCIFLQSARNLFNAFDTAKQGRVTLDLNQFVYCAAS CRI" CDS complement(join(4475825..4475844,4476197..4476270, 4476621..4476697,4477327..4477383,4477613..4477649, 4477731..4477753,4478048..4478079,4478194..4478234, 4478324..4478382,4478465..4478548)) /locus_tag="TCM_027506" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Calcium-dependent protein kinase 23 isoform 6" /protein_id="EOY26108.1" /db_xref="Phytozome:Glyma04g00240.1" /translation="MEDGVILREWFGRVDSEKTGSITATQLKSAFAIGNLDFPLSVVQ QMIRMYDFDRNGTMSFEEFLALNKFLIKQAFSDLERNRGFLATDDVYEALNKIGFSLD TPAFYAACESFDQKKNGRLQLDDFISLCIFLQSARNLFNAFDTAKQGRVTLDLNQFVY CAASCRI" CDS complement(join(4475825..4475844,4476197..4476270, 4476621..4476697,4477327..4477383,4477613..4477649, 4477731..4477759,4478048..4478079,4478194..4478234, 4478324..4478382,4478465..4478548)) /locus_tag="TCM_027506" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Calcium-dependent protein kinase 23 isoform 1" /protein_id="EOY26103.1" /db_xref="Phytozome:Glyma04g00240.1" /translation="MEDGVILREWFGRVDSEKTGSITATQLKSAFAIGNLDFPLSVVQ QMIRMYDFDRNGTMSFEEFLALNKFLIKVQQAFSDLERNRGFLATDDVYEALNKIGFS LDTPAFYAACESFDQKKNGRLQLDDFISLCIFLQSARNLFNAFDTAKQGRVTLDLNQF VYCAASCRI" CDS complement(join(4475825..4475844,4476197..4476270, 4476621..4476697,4477327..4477419,4477613..4477649, 4477731..4477759,4478048..4478079,4478194..4478234, 4478324..4478382,4478465..4478548)) /locus_tag="TCM_027506" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Calcium-dependent protein kinase 23 isoform 3" /protein_id="EOY26105.1" /db_xref="Phytozome:Glyma04g00240.1" /translation="MEDGVILREWFGRVDSEKTGSITATQLKSAFAIGNLDFPLSVVQ QMIRMYDFDRNGTMSFEEFLALNKFLIKVQQAFSDLERNRGFLATDDVYELFWLVIIQ PLLQALNKIGFSLDTPAFYAACESFDQKKNGRLQLDDFISLCIFLQSARNLFNAFDTA KQGRVTLDLNQFVYCAASCRI" CDS complement(join(4475825..4475844,4476197..4476270, 4476621..4476697,4477327..4477383,4477613..4477661, 4477731..4477759,4478048..4478079,4478194..4478234, 4478324..4478382,4478465..4478548)) /locus_tag="TCM_027506" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Calcium-dependent protein kinase 23 isoform 2" /protein_id="EOY26104.1" /db_xref="Phytozome:Glyma04g00240.1" /translation="MEDGVILREWFGRVDSEKTGSITATQLKSAFAIGNLDFPLSVVQ QMIRMYDFDRNGTMSFEEFLALNKFLIKVQQAFSDLESSLYRNRGFLATDDVYEALNK IGFSLDTPAFYAACESFDQKKNGRLQLDDFISLCIFLQSARNLFNAFDTAKQGRVTLD LNQFVYCAASCRI" CDS complement(join(4476269..4476270,4476643..4476697, 4477327..4477383,4477613..4477649,4477731..4477759, 4478048..4478079,4478212..4478234,4478324..4478382, 4478465..4478548)) /locus_tag="TCM_027506" /note="encoded by transcript variant 10; alternatively spliced" /codon_start=1 /product="Calcium-dependent protein kinase 23 isoform 10" /protein_id="EOY26112.1" /db_xref="Phytozome:POPTR_0004s21470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MYY7" /translation="MEDGVILREWFGRVDSEKTGSITATQLKSAFAIGNLDFPLSVVQ QMIRMYDFDRNEFLALNKFLIKVQQAFSDLERNRGFLATDDVYEALNKIGFSLDTPAF YAACESFDQKKNGRLQLDDFISL" CDS complement(join(4476269..4476270,4476643..4476697, 4477327..4477383,4477613..4477649,4477731..4477753, 4478048..4478079,4478194..4478234,4478324..4478382, 4478465..4478548)) /locus_tag="TCM_027506" /note="encoded by transcript variant 9; alternatively spliced; dbxref ricco:30122.m000345" /codon_start=1 /product="Calcium-dependent protein kinase 23 isoform 9" /protein_id="EOY26111.1" /translation="MEDGVILREWFGRVDSEKTGSITATQLKSAFAIGNLDFPLSVVQ QMIRMYDFDRNGTMSFEEFLALNKFLIKQAFSDLERNRGFLATDDVYEALNKIGFSLD TPAFYAACESFDQKKNGRLQLDDFISL" CDS complement(join(4476269..4476270,4476643..4476697, 4477327..4477383,4477613..4477649,4477731..4477759, 4478048..4478079,4478194..4478234,4478324..4478382, 4478465..4478548)) /locus_tag="TCM_027506" /note="encoded by transcript variant 8; alternatively spliced; dbxref ricco:30122.m000345" /codon_start=1 /product="Calcium-dependent protein kinase 23 isoform 8" /protein_id="EOY26110.1" /translation="MEDGVILREWFGRVDSEKTGSITATQLKSAFAIGNLDFPLSVVQ QMIRMYDFDRNGTMSFEEFLALNKFLIKVQQAFSDLERNRGFLATDDVYEALNKIGFS LDTPAFYAACESFDQKKNGRLQLDDFISL" CDS complement(join(4476269..4476270,4476643..4476697, 4477327..4477419,4477613..4477649,4477731..4477759, 4478048..4478079,4478194..4478234,4478324..4478382, 4478465..4478548)) /locus_tag="TCM_027506" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Calcium-dependent protein kinase 23 isoform 4" /protein_id="EOY26106.1" /db_xref="Phytozome:POPTR_0004s21470.2" /translation="MEDGVILREWFGRVDSEKTGSITATQLKSAFAIGNLDFPLSVVQ QMIRMYDFDRNGTMSFEEFLALNKFLIKVQQAFSDLERNRGFLATDDVYELFWLVIIQ PLLQALNKIGFSLDTPAFYAACESFDQKKNGRLQLDDFISL" CDS complement(join(4476269..4476270,4476643..4476697, 4477327..4477383,4477613..4477661,4477731..4477759, 4478048..4478079,4478194..4478234,4478324..4478382, 4478465..4478548)) /locus_tag="TCM_027506" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30122.m000345" /codon_start=1 /product="Calcium-dependent protein kinase 23 isoform 5" /protein_id="EOY26107.1" /translation="MEDGVILREWFGRVDSEKTGSITATQLKSAFAIGNLDFPLSVVQ QMIRMYDFDRNGTMSFEEFLALNKFLIKVQQAFSDLESSLYRNRGFLATDDVYEALNK IGFSLDTPAFYAACESFDQKKNGRLQLDDFISL" CDS complement(join(4476584..4476697,4477327..4477383, 4477613..4477649,4477731..4477759,4478048..4478079, 4478194..4478234,4478324..4478382,4478465..4478548)) /locus_tag="TCM_027506" /note="encoded by transcript variant 11; alternatively spliced; dbxref ricco:30122.m000345" /codon_start=1 /product="Calcium-dependent protein kinase 23 isoform 11" /protein_id="EOY26113.1" /translation="MEDGVILREWFGRVDSEKTGSITATQLKSAFAIGNLDFPLSVVQ QMIRMYDFDRNGTMSFEEFLALNKFLIKVQQAFSDLERNRGFLATDDVYEALNKIGFS LDTPAFYAACESFDQKKNGRLQLDDFISLCIFLQSARYSISHVCRSAC" gene 4479779..4482330 /locus_tag="TCM_027507" /note="dbxref CacaoGD:Thecc1EG027507" mRNA 4479779..4482330 /locus_tag="TCM_027507" /product="Heat shock protein 70B" /inference="alignment:exonerate- protein:2:ricco:30131.m006881" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038404t1" /inference="similar to AA sequence:ricco:30131.m006881" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc314t1" CDS 4479883..4481847 /locus_tag="TCM_027507" /note="dbxref ricco:30131.m006881; paralog of Thecc1EG038404t1" /codon_start=1 /product="Heat shock protein 70B" /protein_id="EOY26114.1" /db_xref="TAIR:AT1G16030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P08107" /translation="MAAKAQGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSY VAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQSDMKHWPFKVVAGPG DKPMIVVTYKGEEKQFAAEEISSMVLTKMKEVAEAYLGQTVTNAVTTVPAYFNDSQRQ ATKDAGAIAGLNVLRIINEPTAAAIAYGLDKKASRSGEKNVLIFDLGGGTFDVSLLTI EEGIFEVKATAGDTHLGGEDFDNRVVNHFVQEFKRKHKKDISSNARALRRLRTACERA KRTLSSTTQTTIEIDSLYAGIDFYSTITRARFEELNMDLFSKCMEPVEKCLRDSRIDK SQVDEVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNK KVQDLLLLDITPLSLGIETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYE GERARTKDNNLLGKFELTGIPAAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKIT ITNDKGRLSKEEIERMVQEAERYKAEDEEVKKKVEAKNSLENYAYNMRNTVKDEKFAG KLDPSDKQKIEKAIDETVEWLDRNQLAEVDEFEDKLKELEGICNPIISKMYQGGGGDV PMGGTEMPSSGYGKAGSGGTGAGPKIEEVD" mobile_element 4485239..4487241 /note="source:CACAO_hAT_E2605_scaffold_6 1 2003" /mobile_element_type="transposon:TIR/hAT" mobile_element 4488992..4493314 /note="source:scaffold_6_CACTA_0701 1 4323" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4494093..4495221) /note="source:CACAO_M_E58912_F42_scaffold_9 1986 3120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4495205..4495644 /note="source:CACAO_M_E33928_F19_scaffold_4 2348 2789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4496170..4497670 /note="source:INTACT42_F19_scaffold_5-int 940 2440" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4496170..4496524) /locus_tag="TCM_027509" /note="dbxref CacaoGD:Thecc1EG027509" mRNA complement(join(4496170..4496217,4496303..4496524)) /locus_tag="TCM_027509" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030076t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc3645t1_G3; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc29t1_G2" CDS complement(join(4496191..4496217,4496303..4496524)) /locus_tag="TCM_027509" /note="paralog of Thecc1EG030076t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26115.1" /translation="MDIALHVKLLELHCIFFHRHCFLPQVMKFDKNFLSIMLRKELTL EFSTHLIPCSDLVTAFSFSLSFEIFPPNRSSQSRKSSG" mobile_element 4497964..4501031 /note="source:INTACT42_F19_scaffold_5-int 58 3138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4501031..4503014 /note="source:CACAO_M_E52732_F42_scaffold_8 709 2692" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4504488..4506713) /note="source:CACAO_M_E71058_F389_scaffold_10 197 2447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4506214..4507078 /note="source:INTACT701_F305_scaffold_10-int 12681 13593" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4508648..4512698) /locus_tag="TCM_027512" /note="dbxref CacaoGD:Thecc1EG027512" mRNA complement(join(4508648..4509097,4509187..4509224, 4509722..4510078,4510202..4510260,4510529..4512698)) /locus_tag="TCM_027512" /product="Serine-threonine protein kinase, plant-type, putative" /inference="alignment:exonerate-protein:2:frave:gene15806" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027517t1" /inference="similar to AA sequence:ricco:30131.m006882" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(4508812..4509097,4509187..4509224, 4509722..4510078,4510202..4510260,4510529..4512365)) /locus_tag="TCM_027512" /note="dbxref ricco:30131.m006882; paralog of Thecc1EG027517t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY26116.1" /db_xref="TAIR:AT2G24130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGN4" /translation="MKVGEEKEVTLTKGSFLCTSLLGSGNIFIMAFIRLFFILLLRRS VSVSGNADSAYHHHRHHSLLNDKAALLEFKMSLIFDPKSTLSNWEKAVPVCNFTGVAC DKRHHRVSQINLSSFGLVGKISPFISNLTGLRVLNLFENHFFGTIPHQLSCLQHLRNL ILDSNNLNGPIPNSFALLTNLTLFSVQKNNLTGPLPPSFFSTCTQLKVIDLSLNFFTG QIPAEIGNCPNLWILNLYNNQFTEQLPASLTNTSLYNLDVEYNLLSGQLPSDLVPNLP TLLFLHLSYNKMISHDNNTNLYPFFATLRNCTHLKELELAGMGLGGRLPSSIGHPTLQ RLELQENRIFGSIPPEIGNLSSLSMLNLTSNLLNGAISEEFSQLSKLEQLVLSHNFFN ITIPVELEKLLHLGLLDLSNNNFHGEIPGSLGDLPLLNSLFLNNNLLSGPIPPKLLKC TSLYRFDLSCNKLTGRIPREISELREIRIFIKFSQNLLEGPLPIEIIKLDKVEEMDLS SNNLSGNIFPQISSCTSVQRINFSHNALEGQLPDSLGDLRNLESFDVSSNKISGMIPK RLSKINLTFLNLSFNNFEGMIPSGGIFNSATTMSFLGNPRLCGAPSSSYGRVYRGVLQ DGTSIAVKALVLPYMANGSLESRLYPHSKSGLGSGSSDLSLIQGVSICSDIAEGMAYL HHHSTVRVIHCDLKPSNVLLNDDITALVSDIGIAIVVMTVGAGNGAGAIETWEILLQI CYMDPSVTLHQSMDLDPKHLSGQIWVKSHYPGRVEKVVDSSLIRASRDQSPEVTRMWE VAIREMIELGILRTQETRSIRPTMLDAADDLDRLKRYRSGDTTAAFASSLGISSSTLG DD" mobile_element 4513403..4515476 /note="source:CACAO_PIF_E119_scaffold_3 6784 8937" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4515477..4516061) /note="source:CACAO_Mutator_E1018_scaffold_5 4003 4566" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4516062..4519444 /note="source:CACAO_PIF_E119_scaffold_3 8938 12453" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4519442..4519768 /note="source:CACAO_PIF_E119_scaffold_3 12677 13004" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4519577..4519811) /note="source:CACAO_Mutator_E1320_scaffold_6 2002 2251" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(4519766..4520755) /note="source:CACAO_PIF_E62_scaffold_2 12954 13942" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4519911..4521342) /note="source:CACAO_Mutator_E592_scaffold_3 9595 11040" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(4520788..4521906) /note="source:CACAO_PIF_E62_scaffold_2 11840 12958" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4521330..4522130) /note="source:CACAO_Mutator_E592_scaffold_3 8820 9542" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(4522126..4522440) /note="source:CACAO_Mutator_E592_scaffold_3 18935 19242" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(4522519..4522566) /note="source:CACAO_PIF_E62_scaffold_2 16575 16623" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4522640..4522687 /note="source:CACAO_PIF_E62_scaffold_2 16575 16623" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4522799..4523141) /note="source:CACAO_PIF_E62_scaffold_2 16126 16467" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4523137..4523339) /note="source:CACAO_PIF_E62_scaffold_2 13740 13942" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4523340..4525719) /note="source:CACAO_Mutator_E592_scaffold_3 7208 9611" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(4523594..4528817) /note="source:CACAO_PIF_E62_scaffold_2 7095 12308" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4533280..4533482 /note="source:INTACT639F_F363_scaffold_5-int 8111 8276" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(4533846..4537774) /locus_tag="TCM_027517" /note="dbxref CacaoGD:Thecc1EG027517" mRNA complement(join(4533846..4534490,4535036..4537774)) /locus_tag="TCM_027517" /product="Serine-threonine protein kinase, plant-type, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s18230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027526t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s18230.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1474t1" CDS complement(join(4534078..4534490,4535036..4537589)) /locus_tag="TCM_027517" /note="paralog of Thecc1EG027526t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY26117.1" /db_xref="Phytozome:POPTR_0003s18230.1" /db_xref="TAIR:AT2G24130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGN4" /translation="MAFIRLFFILLLRHLVSVSSNADSAYHHHRHHSLLNDKAALLEF KRSIFDPKSTLSNWEKAVPVCNFTGVTCDKRYHRVSQINLCSFGLVGKISPFISNLTG LRVLNLFENHFFGTIPPQLSSLQHLRTLMLDSNNLNGPIPNSFALLTNLTLFSVQNNS LTGPLPPSFFSNWTQLKNIDLSFNFFTGQIPAEIGNCANLWTLNLYNNQFTGQLPASL TNASLYNLDVEYNLLSGEVPSDLVRKLPKLLFLHLSYNKMTSHDNNTNLYPFFATLRN CTHLKELELAGMGLGGRLPSSIGHPTLQRLELQENRIFGSIPPEIGNLSSLSMLNLTS NLLNGTISEEIGRLSMLEQLVLSHNFFNITIPVELPKLHLGLLDLSNNNFHGEIPGSL GDLPLLNSLFLNNNLLSGSIPPKLLKCTNLYRFDLSYNKLTGRIPREISELREIRIFI NFSHNLLEGPLPIEISKLDKVQEMDLSSNNLSGNIFPQISSCTAVQRIDFSHNALEGQ LPDSLGDLRNLESFDVSSNKISGMIPKSLSNINLTFLNLSFNNFEGMIPSGGIFNSAT NMSFLGNPRLCGAASSTPICPRNKHWFRSRMFLIIFIIVIVVSVLLSAVCFMIGIRRV KLMVSSRKTERSSKPPTPEIMHNFPRITYRELSEATGGFDDHKLIGTGSYGRVYRGVL QDGTSIAVKVLHLQTGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMA NGSLESRLYPHSESGLGSGSSDLSLIQRVSICSDIAEGMAYLHHHSPVRVIHCDLKPS NVLLNDDMTALVSDFGIARLVMTVGAGNGAGTVENMGTSTANMLDGSIGYIAPEYGFG CNTSIRGDVYSFGVLVLEMVTRKRPTDEMFVGGLNLHRWVKSHYPGRVEKVVDLSLIR ASRDQSPEVTRMWEVAIAELIELGILCTQETPFTRPTMLDVADDLDRLKRYLNGDTTV TFASSLGISSSTLSDD" gene 4537877..4541982 /locus_tag="TCM_027518" /note="dbxref CacaoGD:Thecc1EG027518" mRNA join(4537877..4538154,4538903..4538933,4539043..4539137, 4541608..4541982) /locus_tag="TCM_027518" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(4538093..4538154,4538903..4538933,4539043..4539137, 4541608..4541680) /locus_tag="TCM_027518" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26118.1" /translation="MFTVAATSSNVSGSTVDILVLVFSSSLCLIQVAKVAEILAEYGT KPHEYAPIVNALRKRPQAWFELGLEKPETKKSITDRIHHCYC" mobile_element 4539625..4539728 /note="source:scaffold_9_CACTA_0943 5752 5858" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4543218..4544644 /note="source:CACAO_M_E44478_F9_scaffold_6 1 1427" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4545628..4545681 /note="source:scaffold_4_CACTA_0502 2683 2735" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4546038..4546140) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3103 3168" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4547855..4547940 /note="source:INTACT296_F13_scaffold_9-int 13173 13244" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4548085..4556269 /locus_tag="TCM_027519" /note="dbxref CacaoGD:Thecc1EG027519" mRNA join(4548085..4548140,4554857..4555050,4555261..4556269) /locus_tag="TCM_027519" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.70 coverage" mobile_element complement(4553416..4554348) /note="source:CACAO_M_E49279_F74_scaffold_6 1002 1935" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(4554948..4555050,4555261..4555913) /locus_tag="TCM_027519" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26119.1" /translation="MASSTTIMMSSLLLTSLALLGLLATAIKARPLPPENSRNKFMII MINNVGNSTKTRDTTRIDHCDHMTEFSIEGKITPRPPSPKSSPPTHQVMSYPAPKPST PTPQLELVSSCAEGSPCNSLISLSANFGKNPKSPPSPNPAPSKHQGELEQPIQQRSSP EFQLISMFTNFGKTPKSPPSPKPAPSKHQGIIERPITQKSRPDFQLISMFTNFGKTPI SPPSPKPAPPKNQGMIEQLMQRRSPPDFHFASY" mobile_element 4558546..4560466 /note="source:INTACT3_F103_scaffold_8-int 1640 3548" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4560473..4561401) /note="source:INTACT3_F103_scaffold_8-int 3597 4527" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4576042..4576080) /note="source:CACAO_M_E1841_F5_scaffold_1 24822 24861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4576133..4577311) /note="source:CACAO_M_E43831_F302_scaffold_5 3 1219" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4577224..4577334 /note="source:CACAO_M_S_E84376_F22_scaffold_6 18754 18867" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4590716..4591025 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18606 18880" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4591128..4591219 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18869 18962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4593708..4593722) /note="source:CACAO_M_S_E83601_F14_scaffold_6 1206 1217" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4593723..4594821 /note="source:INTACT70_F13_scaffold_10-int 1 1099" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4597305..4598554 /note="source:CACAO_M_S_E15173_F4_scaffold_2 673 1890" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4598579..4598762 /note="source:scaffold_1_CACTA_0011 3571 3753" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4601340..4603958 /note="source:CACAO_M_E44502_F144_scaffold_6 1 2619" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4603959..4604187) /note="source:INTACT124_F12_scaffold_10-int 4643 4876" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4604180..4605227 /note="source:CACAO_M_E52239_F256_scaffold_7 21362 22452" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4607918..4608489 /note="source:scaffold_6_CACTA_0702 6894 7465" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4608512..4618520 /note="source:CACAO_M_E44503_F22_scaffold_6 1 10002" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4616227..4651436) /locus_tag="TCM_027526" /note="dbxref CacaoGD:Thecc1EG027526" mRNA complement(join(4616227..4616462,4638179..4640476, 4651341..4651436)) /locus_tag="TCM_027526" /product="Serine-threonine protein kinase, plant-type, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027517t1" /inference="similar to AA sequence:ricco:30131.m006882" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" mobile_element 4618510..4637449 /note="source:scaffold_6_CACTA_0702 1 18354" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4618521..4618564 /note="source:CACAO_M_E58877_F5_scaffold_9 716 756" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(4638274..4640205) /locus_tag="TCM_027526" /note="dbxref ricco:30131.m006882; paralog of Thecc1EG027517t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY26120.1" /db_xref="TAIR:AT2G24130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGN4" /translation="MALIRLLLILLLRYLVSVSGNADSAYDHHRHYSLLKDKAALLEF KGSIYDPKSTLSNWEDAVPVCNFTGVTCDMRYHRVSQINLHSFGLVGKISPFISNLTG LRVLNLFENHFFGTISPQLSSLQHLRTLILDSNNLNGPIPNSFALLTNLTLFSVQNNS LTGPLPPSFFSNCSQLKNIDLSFNFFTGQIPAKIGNCANLWTLNLYNNQFTGQLPASL TNASLYNLDVEYNLLSGEVPSDLVRKLPKLLFLHLSYNKMTSHDNNTNLYPFFATLRN CTHLKELELAGMGLGGRLPSSIGHPTLQRLELQENRIFGSIPPEIGNLSSLSMLNLTS NLLNGTISEEIGRLSMLEQLVLSHNFFNITIPVELAKLFHLVLLDLSNNNFHGEIPAS LGDLPLLNSLFLYNNLLSGTIPPKLLKWTNMHRFDLSCNKLIGRIPPEISELREIRIF INFSHNLLEGPLPIEISNLDKVQEMDLSSNNLSGNIFPQISSCVSVEMINFSHNALAG RLPDSVGDLRNLKSFDVSSNNISGMIPKSLSKINLTFLNLSFNNFEGMIPSGGIFNSA TNMSFLGNPSLCGAASSTPICPRNKHWFRSRMFLIIFIIVIVVSVLSSTVCWVIGIRQ VKLMVSSSKTERSRKSVLN" mobile_element 4644042..4644299 /note="source:INTACT167_F5_scaffold_2-int 1 272" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4650401..4650624 /note="source:CACAO_M_S_E119191_F3_scaffold_9 1 225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4650685..4651320 /note="source:CACAO_M_S_E119191_F3_scaffold_9 222 855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4653302..4659087) /note="source:CACAO_M_S_E122136_F76_scaffold_10 9684 15430" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4660219..4661338 /note="source:CACAO_M_E4027_F323_scaffold_2 1085 2206" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4662017..4662441) /note="source:INTACT659F_F82_scaffold_5-int 1 420" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4662442..4663501 /note="source:CACAO_on_SS_E90_scaffold_6 7421 8508" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(4664588..4665896) /note="source:CACAO_M_E57011_F326_scaffold_8 1676 2982" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4665897..4666830) /note="source:INTACT135_F42_scaffold_4-int 12309 13238" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4677031..4677770 /note="source:CACAO_M_E13757_F15_scaffold_3 2198 3095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4677758..4677789) /note="source:CACAO_M_E69460_F12_scaffold_9 9758 9789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4677763..4678757) /note="source:INTACT135_F42_scaffold_4-int 1127 2121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4680367..4680929) /note="source:CACAO_M_S_E51867_F7_scaffold_4 8712 9273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4680912..4680966 /note="source:CACAO_M_S_E119191_F3_scaffold_9 6142 6195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4680927..4680967) /note="source:CACAO_M_E69460_F12_scaffold_9 10715 10755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4681068..4681784) /note="source:INTACT135_F42_scaffold_4-int 10147 10888" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4681781..4683459) /note="source:CACAO_M_E57011_F326_scaffold_8 1 1684" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4683460..4684052 /note="source:CACAO_M_E43590_F7_scaffold_5 2999 3615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4684046..4684724) /note="source:CACAO_on_SS_E90_scaffold_6 6141 6821" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4684825..4686247 /note="source:INTACT453_F4_scaffold_9-int 4164 5584" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4686350..4688172 /note="source:CACAO_M_E53587_F207_scaffold_8 10160 11969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4688170..4688457 /note="source:INTACT302_F7_scaffold_7-int 7208 7495" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4688630..4689444) /note="source:CACAO_M_S_E51867_F7_scaffold_4 4290 5100" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4689454..4689747 /note="source:CACAO_M_S_E5046_F335_scaffold_1 15581 15937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4689848..4690378 /note="source:CACAO_M_S_E5046_F335_scaffold_1 15964 16492" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4690903..4691008) /note="source:CACAO_M_S_E51867_F7_scaffold_4 5094 5145" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4690957..4691015 /note="source:INTACT302_F7_scaffold_7-int 7807 7865" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4691211..4691659) /note="source:CACAO_M_S_E84244_F33_scaffold_6 2652 3101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4691628..4694190) /note="source:CACAO_M_E57011_F326_scaffold_8 1 4310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4694727..4695155 /note="source:INTACT167_F5_scaffold_2-int 5269 5691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4698508..4698656) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3189 3287" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4698911..4701070) /locus_tag="TCM_027531" /note="dbxref CacaoGD:Thecc1EG027531" mRNA complement(join(4698911..4698949,4699922..4701070)) /locus_tag="TCM_027531" /product="Serine-threonine protein kinase, plant-type, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027517t1" /inference="similar to AA sequence:ricco:30131.m006882" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.97 coverage" CDS complement(4700050..4700937) /locus_tag="TCM_027531" /note="dbxref ricco:30131.m006882; paralog of Thecc1EG027517t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY26121.1" /db_xref="TAIR:AT2G24130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGN4" /translation="MALIILLSILLLRYLVSVSGNADSAYNHHQHYSLLKDKAALLEF KRSIYDPKSTLSNWENAVPVCNFTGVTCDNRHHRVSEIDLHRFGLVGKISPFISNLTG LRVLNLVENHFFGTIPPQLSSLRRLHTLFLDGNNLNGPVPDSSALLTNLTVFSVHMNN LTGPLPPSFFSNCTQLRVIDLSLNFLTCQIPAEIGNCPNLWSLNLYNNQFTGQLPASL TNTSLFNLDVGYNLLSGELPSDLIAKLPTLAYLYLSFNNMTSHHNNSNLYPFFAALQN CTDLEELALDGMGLGGRLL" mobile_element complement(4705543..4705618) /note="source:CACAO_M_E10693_F272_scaffold_2 12698 12771" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4705555..4706760 /note="source:INTACT293_F14_scaffold_5-int 11863 13068" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4707245..4709851) /note="source:INTACT506_F233_scaffold_3-int 8695 10104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4708452..4711445 /note="source:INTACT424_F211_scaffold_12-int 1133 4116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4711446..4715488) /note="source:CACAO_M_S_E85473_F233_scaffold_7 926 11347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4715489..4716769) /note="source:scaffold_4_CACTA_0489 5924 7220" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4716693..4716794 /note="source:CACAO_M_E1841_F5_scaffold_1 16585 16688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4719428..4722005) /note="source:CACAO_M_E84179_F14_scaffold_10 7001 9656" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4723000..4726054) /note="source:scaffold_9_CACTA_0931 8 3061" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4726362..4735821 /note="source:CACAO_M_E44543_F5_scaffold_6 1 10312" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4735822..4735890) /note="source:CACAO_M_E36038_F90_scaffold_5 12859 12925" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4736667..4736816 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3171 3273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4743924..4744553) /note="source:scaffold_5_CACTA_0601 8100 8728" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4747079..4747285) /note="source:CACAO_M_S_E119615_F3_scaffold_9 18789 19009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4747338..4749368) /note="source:CACAO_M_E48498_F87_scaffold_6 738 2766" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4749369..4749481 /note="source:CACAO_M_E58877_F5_scaffold_9 5288 5400" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4752583..4754007 /note="source:INTACT58_F125_scaffold_5-int 14836 16331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4753497..4754238) /note="source:INTACT375F_F353_scaffold_3-int 1402 2042" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4755052..4764733 /note="source:INTACT1427F_F390_scaffold_9-int 3127 12594" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4764741..4768614 /note="source:CACAO_M_E69806_F80_scaffold_9 5508 9366" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4768616..4768769 /note="source:scaffold_1_CACTA_0028 15583 15734" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4768799..4769249 /note="source:CACAO_Mariner_E176_scaffold_6 1846 2287" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 4769403..4771187 /note="source:CACAO_M_E50311_F328_scaffold_7 3278 5077" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4771188..4772981 /note="source:CACAO_M_E53388_F15_scaffold_8 3277 5065" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4772981..4774004 /note="source:CACAO_M_E59221_F15_scaffold_9 7990 9011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4776043..4776211 /note="source:INTACT642F_F365_scaffold_5-int 15900 16065" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4776182..4777510) /note="source:INTACT135_F42_scaffold_4-int 10133 11465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4777711..4777796 /note="source:CACAO_M_E50311_F328_scaffold_7 5073 5158" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4777797..4778419 /note="source:CACAO_M_E50311_F328_scaffold_7 5834 6457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4782077..4782891) /note="source:CACAO_M_E43781_F323_scaffold_5 2644 3457" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4790026..4790872 /locus_tag="TCM_027537" /note="dbxref CacaoGD:Thecc1EG027537" mRNA join(4790026..4790554,4790631..4790872) /locus_tag="TCM_027537" /product="Serine-threonine protein kinase, plant-type, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027531t1" /inference="similar to AA sequence:ricco:30131.m006882" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(4790137..4790554,4790631..4790827) /locus_tag="TCM_027537" /note="dbxref ricco:30131.m006882; paralog of Thecc1EG027531t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY26122.1" /db_xref="TAIR:AT3G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGN4" /translation="MRIQLIIITATILYSKTRLHFWNSIYDPKSTLSNWENAVPVCNF TGVTCDNRHHPVSQSDLHRFGLVGKISPFISNLTGLRVLNLFQNYFFGTIPPQLSSLR HVRTLILDGNNLTGPVPDSFALLNNLTLFFVQRNYLTLQIPAEIGDCPNLWSLNLYNN QFTGQLPASLTNTSLYNLDVGYNLLYGELPSDLIAKLLELGFLY" mobile_element 4790822..4797348 /note="source:CACAO_PIF_E119_scaffold_3 6781 13331" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4796443..4798826) /note="source:CACAO_PIF_E62_scaffold_2 14336 16708" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4798343..4799760 /note="source:CACAO_PIF_E119_scaffold_3 13335 14264" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4799710..4800609) /note="source:CACAO_PIF_E62_scaffold_2 13059 13989" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4800609..4801306) /note="source:CACAO_PIF_E62_scaffold_2 11754 12430" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4801304..4801606 /note="source:CACAO_PIF_E119_scaffold_3 7816 8118" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4801613..4801789) /note="source:CACAO_Mutator_E1018_scaffold_5 467 643" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4801805..4801917 /note="source:CACAO_Mutator_E1018_scaffold_5 503 615" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(4801956..4802295) /note="source:CACAO_PIF_E62_scaffold_2 16126 16467" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4802113..4802336) /note="source:CACAO_Mutator_E1320_scaffold_6 2002 2244" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(4802291..4802358) /note="source:CACAO_PIF_E62_scaffold_2 13875 13942" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4802399..4804147) /note="source:CACAO_PIF_E62_scaffold_2 10728 12417" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4804148..4806862 /note="source:CACAO_M_E44556_F79_scaffold_6 1 2715" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4806863..4810499) /note="source:CACAO_PIF_E62_scaffold_2 7095 10732" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 4813427..4821092 /locus_tag="TCM_027541" /note="dbxref CacaoGD:Thecc1EG027541" mRNA join(4813427..4813798,4815514..4815806,4815903..4815968, 4816060..4816102,4816181..4816235,4816400..4816448, 4816894..4816961,4817540..4817648,4818873..4818925, 4819167..4820136,4820341..4821092) /locus_tag="TCM_027541" /product="Endoplasmic reticulum membrane, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s18280.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s18280.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01124t00002" CDS join(4815642..4815806,4815903..4815968,4816060..4816102, 4816181..4816235,4816400..4816448,4816894..4816961, 4817540..4817648,4818873..4818925,4819167..4819185) /locus_tag="TCM_027541" /codon_start=1 /product="Endoplasmic reticulum membrane, putative" /protein_id="EOY26123.1" /db_xref="Phytozome:POPTR_0003s18280.1" /db_xref="TAIR:AT1G16040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7KDM5" /translation="MKEKEENSLSRISSSQVFLTHLCCGLALAVGFWVAYNVYSINLV SDPTNTLRLIWAIECPVVILLFSCFRKKPEKCSYLKAVARGLVGLPAGALVNALGALA LGSPVGLQYFEKTVIWSLLMSLFIFVPASSVYGSSWTDWHRIFACTKPKGSLDFMLCL PAHGAVIGAWFGAWPMPLDWERPWQDWPICVSYGAMAGYVVGINRKKV" gene 4819562..4829158 /locus_tag="TCM_027543" /note="dbxref CacaoGD:Thecc1EG027543" mRNA join(4819562..4819866,4819947..4820538,4828871..4829158) /locus_tag="TCM_027543" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage" CDS join(4819612..4819866,4819947..4820438) /locus_tag="TCM_027543" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26124.1" /translation="MRAEVTPPRAVPCSRPLKSAFKFSLTASFKMCFVGFEKEEEGRI AVGKLNGVYGSSISALGFILQGMEEGTTSGEKEGKDRITQMALKGTKGKSGESWNLRD GIKKQPRSCKGDINVDNLHNLESSIIACWPLKKYFIACSEDRVSAANLQEYLSMEGNQ QLRVRNLAPNYFLVALNDKTSFEELRKESWGWLNKWFKSIEAWSMDFSTPYVHKWVPV KGALAHAWYHSTFKSIAKCCGELLIVDERP" mobile_element complement(4825081..4825476) /note="source:INTACT405F_F91_scaffold_4-int 7212 7607" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4825577..4826034) /note="source:CACAO_M_E22895_F323_scaffold_3 2546 3003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4826135..4827775 /note="source:CACAO_M_E59669_F323_scaffold_9 934 2575" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4827876..4828426 /note="source:CACAO_M_E52823_F82_scaffold_8 2439 2989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4828527..4828802 /note="source:CACAO_M_E11044_F82_scaffold_2 3043 3323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4828681..4828815) /note="source:CACAO_M_E59600_F12_scaffold_9 5925 6057" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4838164..4838255 /note="source:INTACT1334F_F383_scaffold_8-int 3593 3686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4839082..4839294) /note="source:INTACT261_F189_scaffold_2-int 921 1140" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4839763..4839964 /note="source:scaffold_4_CACTA_0482 4495 4699" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4843161..4843240 /note="source:INTACT1334F_F383_scaffold_8-int 6088 6166" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4846412..4846502) /note="source:CACAO_M_E3326_F17_scaffold_1 11770 11864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4846423..4847559 /note="source:INTACT1334F_F383_scaffold_8-int 7631 8753" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4849285..4849410 /note="source:INTACT1334F_F383_scaffold_8-int 442 558" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4850933..4850978 /note="source:INTACT261_F189_scaffold_2-int 12546 12591" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4853442..4853579 /note="source:scaffold_9_CACTA_0924 4469 4606" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4853580..4854789 /note="source:CACAO_M_E44558_F5_scaffold_6 1 1210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4854792..4856311 /note="source:scaffold_9_CACTA_0924 4622 6153" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4859108..4860650 /note="source:CACAO_M_E44559_F17_scaffold_6 1 1543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4860734..4861098 /note="source:scaffold_9_CACTA_0924 4075 4441" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4861102..4862225 /note="source:scaffold_9_CACTA_0924 5043 6154" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4865058..4865655 /note="source:scaffold_4_CACTA_0494 1547 2173" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4865801..4865917 /note="source:CACAO_M_E1841_F5_scaffold_1 4314 4435" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4866062..4869597) /locus_tag="TCM_027546" /note="dbxref CacaoGD:Thecc1EG027546" mRNA complement(join(4866062..4866090,4866564..4866677, 4866929..4866976,4868989..4869597)) /locus_tag="TCM_027546" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(join(4866569..4866677,4866929..4866976, 4868989..4869113)) /locus_tag="TCM_027546" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26125.1" /translation="MERAHEKGPIATRKEAQWQEGRVGPKKKKGGDLGLGQPSPNRIG LTCNHRRVQSTTDSDLIDISSKVCSGLGGSSPEVSNTGSNRERVVTIFM" mobile_element complement(4866581..4868561) /note="source:INTACT88_F12_scaffold_4-int 12012 13988" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4869260..4875575 /locus_tag="TCM_027547" /note="dbxref CacaoGD:Thecc1EG027547" mRNA join(4869260..4869623,4873319..4873499,4873576..4873717, 4873844..4874099,4874261..4874596,4875306..4875575) /locus_tag="TCM_027547" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" mobile_element 4870216..4871049 /note="source:scaffold_7_CACTA_0794 1 847" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4871940..4872083) /note="source:INTACT296_F13_scaffold_9-int 13173 13258" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4871962..4872036 /note="source:CACAO_M_E24751_F297_scaffold_4 1239 1314" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(4873348..4873499,4873576..4873717,4873844..4874099, 4874261..4874596,4875306..4875379) /locus_tag="TCM_027547" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26126.1" /translation="MVGKFTQIPKMQEIRDTFIGIGPVGAYEIGWLDYKHILIWLSNE HDLNRIWNLLWISFPNLRAHLYEKSALLVIAKIVGRPLMVDEATANRTRPNMAKYCTC HVGHSESTCLVMGHHPKKKLQSTRIKKQWKGNENGCEKRKEGDLMPKEGNEIDQTLVI SPKQSTMWQVISRRGTRGTKDPRAKIRPRQTVLGFAIGEKGDLGSTDPLVVKDTSVAV NLPASGKSWDSRTTHTQDRGGQEITGQQDGKIKDGFATLKAVENDSAPLLSVPVSNHA WIIDSDEIGRTASASVENVGSKLEFFRRKLGFEAAASNSSQKI" gene 4881784..4891076 /locus_tag="TCM_027548" /note="dbxref CacaoGD:Thecc1EG027548" mRNA join(4881784..4881827,4882638..4884121,4886340..4886420, 4887907..4887975,4888476..4888563) /locus_tag="TCM_027548" /product="Uncharacterized protein isoform 11" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03350.1" /note="transcript variant 11; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1603t4; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1603t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1607t3" mRNA join(4881785..4881827,4882638..4884117,4886340..4886420, 4887907..4887978,4888476..4888559,4889227..4889646, 4890133..4891076) /locus_tag="TCM_027548" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03350.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016106001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b026643t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2702t4" mRNA join(4881785..4881827,4882638..4884117,4886340..4886420, 4887907..4887975,4888476..4888559,4889227..4889442, 4889524..4889646,4890133..4891076) /locus_tag="TCM_027548" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03350.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016106001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2702t4" mRNA join(4881785..4881827,4882638..4884117,4887907..4887975, 4888476..4888559,4889227..4889646,4890133..4891076) /locus_tag="TCM_027548" /product="Uncharacterized protein isoform 9" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03350.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016106001" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b026643t1a5; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2702t4" mRNA join(4881785..4881827,4882638..4884117,4887907..4887975, 4888476..4888559,4889227..4889442,4889524..4889646, 4890133..4891076) /locus_tag="TCM_027548" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03350.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016106001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b026643t1a4; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2702t4" mRNA join(4881785..4881827,4882638..4884117,4887907..4887975, 4888476..4888559,4889227..4889442,4889559..4889646, 4890133..4891076) /locus_tag="TCM_027548" /product="Uncharacterized protein isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03350.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b026643t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1522t2" mRNA join(4881808..4881827,4882638..4884117,4888476..4888563, 4889227..4889442,4889522,4889524..4889646, 4890133..4890339,4890958..4890987) /locus_tag="TCM_027548" /product="Uncharacterized protein isoform 10" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03350.1" /note="transcript variant 10; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1522t4; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1603t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1607t3" mRNA join(4881808..4881827,4882638..4884117,4886340..4886420, 4887907..4887975,4888476..4888559,4889227..4889646, 4890133..4890632) /locus_tag="TCM_027548" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03350.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016106001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1522t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2702t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1522t2" mRNA join(4881808..4881827,4882638..4884117,4887907..4887978, 4888476..4888559,4889227..4889443,4889559..4889646, 4890133..4890632) /locus_tag="TCM_027548" /product="Uncharacterized protein isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03350.1" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1522t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1522t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2702t4" mRNA join(4882560..4884117,4886340..4886420,4887907..4887975, 4888476..4888559,4889227..4889442,4889559..4889646, 4890133..4890636) /locus_tag="TCM_027548" /product="Uncharacterized protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s03350.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2702t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1522t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2702t4" CDS join(4882614..4884117,4886340..4886420,4887907..4887975, 4888476..4888559,4889227..4889442,4889559..4889614) /locus_tag="TCM_027548" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 6" /protein_id="EOY26131.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HBZ0" /translation="MSYLNSKQTTNMGHGKSNNVDKIPTFSPQLQNTEEIGFQSLSNE AVCFDGLTGVETVDAPLNELSHFPSSHLGDMSLKGIDWMIHGSQLDSYQNFMVHPHVM NGTGYVPSQYSTLENIASNTGGLQMGMQGAKVYNSKPQSIGNFMSCGSRAPLLCGAQD GREMGSNNNLVDCVVQSDYPETLDGSFLTLGVGVNTESRSKANALSRDFIGKIDGAIK MQLNPSHVQSGYESSFSPDFRMAVALSDNQTYAGGFSSIEENAVGLSSLKHNLDGLHS IVQNAGESSNVSAFAGTVQNAGESSNVSAFAGPVQNVDSCSLSEYHLGVSDSTSSNFS LSPSQMLPMPQSHVSHPLLTPDDQKFCTGFANIDPFHGLSGVSPNIVHISSQSGLPPN QSFLGLPGVSPIVHGSSQFGLPPNEGFHSLCCESQIVHSSRQSGLPVQAQHRMAPWPS LSSYMTSKYATLASDQLQKCNMGSIPCFQWGTSVASPVLGNIESTSNQYQSAVWQHYP AHHGGANQTVENAPFSKRIEDQLFACDGGASQVSTTIPFSKNSDKLSASDGTAAEVVS ITPSFKNIGVQPSSTGQVISFSRESGPANLLAGPSRKRKAAQSPPATPQVQIKKTRSA KPSIRSSTLYRARDAPFVSPLPPVVSQGHSCLCATDMDCSCPSLS" CDS join(4882647..4884117,4886340..4886420,4887907..4887978, 4888476..4888559,4889227..4889646,4890133..4890350) /locus_tag="TCM_027548" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY26129.1" /db_xref="Phytozome:GSVIVT01016106001" /translation="MGHGKSNNVDKIPTFSPQLQNTEEIGFQSLSNEAVCFDGLTGVE TVDAPLNELSHFPSSHLGDMSLKGIDWMIHGSQLDSYQNFMVHPHVMNGTGYVPSQYS TLENIASNTGGLQMGMQGAKVYNSKPQSIGNFMSCGSRAPLLCGAQDGREMGSNNNLV DCVVQSDYPETLDGSFLTLGVGVNTESRSKANALSRDFIGKIDGAIKMQLNPSHVQSG YESSFSPDFRMAVALSDNQTYAGGFSSIEENAVGLSSLKHNLDGLHSIVQNAGESSNV SAFAGTVQNAGESSNVSAFAGPVQNVDSCSLSEYHLGVSDSTSSNFSLSPSQMLPMPQ SHVSHPLLTPDDQKFCTGFANIDPFHGLSGVSPNIVHISSQSGLPPNQSFLGLPGVSP IVHGSSQFGLPPNEGFHSLCCESQIVHSSRQSGLPVQAQHRMAPWPSLSSYMTSKYAT LASDQLQKCNMGSIPCFQWGTSVASPVLGNIESTSNQYQSAVWQHYPAHHGGANQTVE NAPFSKRIEDQLFACDGGASQVSTTIPFSKNSGNKLSASDGTAAEVVSITPSFKNIGV QPSSTGQVISFSRESGPANLLAGPSRKRKAAQSPPATPQVQIKKTRSAKPSIRSSTLY RARDAPFVSPLPPVVSQGAPVPSLTQSTSTVPPVKLTARPLPPLAYKGPSLPSLSQVT PAYAPLTWTAPVPPSARMSHPPRIKWQDPELLQLSGHNCLLCKRDLSYAPEGPVFQPA LPPPVAVLSCGHCFHDLCLERITPKDEADNPPCIPCVISES" CDS join(4882647..4884117,4886340..4886420,4887907..4887975, 4888476..4888559,4889227..4889646,4890133..4890350) /locus_tag="TCM_027548" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY26130.1" /db_xref="Phytozome:GSVIVT01016106001" /translation="MGHGKSNNVDKIPTFSPQLQNTEEIGFQSLSNEAVCFDGLTGVE TVDAPLNELSHFPSSHLGDMSLKGIDWMIHGSQLDSYQNFMVHPHVMNGTGYVPSQYS TLENIASNTGGLQMGMQGAKVYNSKPQSIGNFMSCGSRAPLLCGAQDGREMGSNNNLV DCVVQSDYPETLDGSFLTLGVGVNTESRSKANALSRDFIGKIDGAIKMQLNPSHVQSG YESSFSPDFRMAVALSDNQTYAGGFSSIEENAVGLSSLKHNLDGLHSIVQNAGESSNV SAFAGTVQNAGESSNVSAFAGPVQNVDSCSLSEYHLGVSDSTSSNFSLSPSQMLPMPQ SHVSHPLLTPDDQKFCTGFANIDPFHGLSGVSPNIVHISSQSGLPPNQSFLGLPGVSP IVHGSSQFGLPPNEGFHSLCCESQIVHSSRQSGLPVQAQHRMAPWPSLSSYMTSKYAT LASDQLQKCNMGSIPCFQWGTSVASPVLGNIESTSNQYQSAVWQHYPAHHGGANQTVE NAPFSKRIEDQLFACDGGASQVSTTIPFSKNSDKLSASDGTAAEVVSITPSFKNIGVQ PSSTGQVISFSRESGPANLLAGPSRKRKAAQSPPATPQVQIKKTRSAKPSIRSSTLYR ARDAPFVSPLPPVVSQGAPVPSLTQSTSTVPPVKLTARPLPPLAYKGPSLPSLSQVTP AYAPLTWTAPVPPSARMSHPPRIKWQDPELLQLSGHNCLLCKRDLSYAPEGPVFQPAL PPPVAVLSCGHCFHDLCLERITPKDEADNPPCIPCVISES" CDS join(4882647..4884117,4886340..4886420,4887907..4887975, 4888476..4888559,4889227..4889442,4889524..4889646, 4890133..4890350) /locus_tag="TCM_027548" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY26127.1" /db_xref="Phytozome:GSVIVT01016106001" /translation="MGHGKSNNVDKIPTFSPQLQNTEEIGFQSLSNEAVCFDGLTGVE TVDAPLNELSHFPSSHLGDMSLKGIDWMIHGSQLDSYQNFMVHPHVMNGTGYVPSQYS TLENIASNTGGLQMGMQGAKVYNSKPQSIGNFMSCGSRAPLLCGAQDGREMGSNNNLV DCVVQSDYPETLDGSFLTLGVGVNTESRSKANALSRDFIGKIDGAIKMQLNPSHVQSG YESSFSPDFRMAVALSDNQTYAGGFSSIEENAVGLSSLKHNLDGLHSIVQNAGESSNV SAFAGTVQNAGESSNVSAFAGPVQNVDSCSLSEYHLGVSDSTSSNFSLSPSQMLPMPQ SHVSHPLLTPDDQKFCTGFANIDPFHGLSGVSPNIVHISSQSGLPPNQSFLGLPGVSP IVHGSSQFGLPPNEGFHSLCCESQIVHSSRQSGLPVQAQHRMAPWPSLSSYMTSKYAT LASDQLQKCNMGSIPCFQWGTSVASPVLGNIESTSNQYQSAVWQHYPAHHGGANQTVE NAPFSKRIEDQLFACDGGASQVSTTIPFSKNSDKLSASDGTAAEVVSITPSFKNIGVQ PSSTGQVISFSRESGPANLLAGPSRKRKAAQSPPATPQVQIKKTRSAKPSIRSSTLYR ARDAPFVSPLPPVVSQAYKGPSLPSLSQVTPAYAPLTWTAPVPPSARMSHPPRIKWQD PELLQLSGHNCLLCKRDLSYAPEGPVFQPALPPPVAVLSCGHCFHDLCLERITPKDEA DNPPCIPCVISES" CDS join(4882647..4884117,4887907..4887975,4888476..4888559, 4889227..4889646,4890133..4890350) /locus_tag="TCM_027548" /note="encoded by transcript variant 9; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 9" /protein_id="EOY26134.1" /db_xref="Phytozome:GSVIVT01016106001" /translation="MGHGKSNNVDKIPTFSPQLQNTEEIGFQSLSNEAVCFDGLTGVE TVDAPLNELSHFPSSHLGDMSLKGIDWMIHGSQLDSYQNFMVHPHVMNGTGYVPSQYS TLENIASNTGGLQMGMQGAKVYNSKPQSIGNFMSCGSRAPLLCGAQDGREMGSNNNLV DCVVQSDYPETLDGSFLTLGVGVNTESRSKANALSRDFIGKIDGAIKMQLNPSHVQSG YESSFSPDFRMAVALSDNQTYAGGFSSIEENAVGLSSLKHNLDGLHSIVQNAGESSNV SAFAGTVQNAGESSNVSAFAGPVQNVDSCSLSEYHLGVSDSTSSNFSLSPSQMLPMPQ SHVSHPLLTPDDQKFCTGFANIDPFHGLSGVSPNIVHISSQSGLPPNQSFLGLPGVSP IVHGSSQFGLPPNEGFHSLCCESQIVHSSRQSGLPVQAQHRMAPWPSLSSYMTSKYAT LASDQLQKCNMGSIPCFQWGTSVASPVLGNIESTSNQYQSDQLFACDGGASQVSTTIP FSKNSDKLSASDGTAAEVVSITPSFKNIGVQPSSTGQVISFSRESGPANLLAGPSRKR KAAQSPPATPQVQIKKTRSAKPSIRSSTLYRARDAPFVSPLPPVVSQGAPVPSLTQST STVPPVKLTARPLPPLAYKGPSLPSLSQVTPAYAPLTWTAPVPPSARMSHPPRIKWQD PELLQLSGHNCLLCKRDLSYAPEGPVFQPALPPPVAVLSCGHCFHDLCLERITPKDEA DNPPCIPCVISES" CDS join(4882647..4884117,4887907..4887975,4888476..4888559, 4889227..4889442,4889524..4889646,4890133..4890350) /locus_tag="TCM_027548" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY26128.1" /db_xref="Phytozome:GSVIVT01016106001" /translation="MGHGKSNNVDKIPTFSPQLQNTEEIGFQSLSNEAVCFDGLTGVE TVDAPLNELSHFPSSHLGDMSLKGIDWMIHGSQLDSYQNFMVHPHVMNGTGYVPSQYS TLENIASNTGGLQMGMQGAKVYNSKPQSIGNFMSCGSRAPLLCGAQDGREMGSNNNLV DCVVQSDYPETLDGSFLTLGVGVNTESRSKANALSRDFIGKIDGAIKMQLNPSHVQSG YESSFSPDFRMAVALSDNQTYAGGFSSIEENAVGLSSLKHNLDGLHSIVQNAGESSNV SAFAGTVQNAGESSNVSAFAGPVQNVDSCSLSEYHLGVSDSTSSNFSLSPSQMLPMPQ SHVSHPLLTPDDQKFCTGFANIDPFHGLSGVSPNIVHISSQSGLPPNQSFLGLPGVSP IVHGSSQFGLPPNEGFHSLCCESQIVHSSRQSGLPVQAQHRMAPWPSLSSYMTSKYAT LASDQLQKCNMGSIPCFQWGTSVASPVLGNIESTSNQYQSDQLFACDGGASQVSTTIP FSKNSDKLSASDGTAAEVVSITPSFKNIGVQPSSTGQVISFSRESGPANLLAGPSRKR KAAQSPPATPQVQIKKTRSAKPSIRSSTLYRARDAPFVSPLPPVVSQAYKGPSLPSLS QVTPAYAPLTWTAPVPPSARMSHPPRIKWQDPELLQLSGHNCLLCKRDLSYAPEGPVF QPALPPPVAVLSCGHCFHDLCLERITPKDEADNPPCIPCVISES" CDS join(4882647..4884117,4887907..4887975,4888476..4888559, 4889227..4889442,4889559..4889614) /locus_tag="TCM_027548" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 7" /protein_id="EOY26132.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HBZ0" /translation="MGHGKSNNVDKIPTFSPQLQNTEEIGFQSLSNEAVCFDGLTGVE TVDAPLNELSHFPSSHLGDMSLKGIDWMIHGSQLDSYQNFMVHPHVMNGTGYVPSQYS TLENIASNTGGLQMGMQGAKVYNSKPQSIGNFMSCGSRAPLLCGAQDGREMGSNNNLV DCVVQSDYPETLDGSFLTLGVGVNTESRSKANALSRDFIGKIDGAIKMQLNPSHVQSG YESSFSPDFRMAVALSDNQTYAGGFSSIEENAVGLSSLKHNLDGLHSIVQNAGESSNV SAFAGTVQNAGESSNVSAFAGPVQNVDSCSLSEYHLGVSDSTSSNFSLSPSQMLPMPQ SHVSHPLLTPDDQKFCTGFANIDPFHGLSGVSPNIVHISSQSGLPPNQSFLGLPGVSP IVHGSSQFGLPPNEGFHSLCCESQIVHSSRQSGLPVQAQHRMAPWPSLSSYMTSKYAT LASDQLQKCNMGSIPCFQWGTSVASPVLGNIESTSNQYQSDQLFACDGGASQVSTTIP FSKNSDKLSASDGTAAEVVSITPSFKNIGVQPSSTGQVISFSRESGPANLLAGPSRKR KAAQSPPATPQVQIKKTRSAKPSIRSSTLYRARDAPFVSPLPPVVSQGHSCLCATDMD CSCPSLS" CDS join(4882647..4884117,4887907..4887978,4888476..4888559, 4889227..4889443,4889559..4889583) /locus_tag="TCM_027548" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 8" /protein_id="EOY26133.1" /translation="MGHGKSNNVDKIPTFSPQLQNTEEIGFQSLSNEAVCFDGLTGVE TVDAPLNELSHFPSSHLGDMSLKGIDWMIHGSQLDSYQNFMVHPHVMNGTGYVPSQYS TLENIASNTGGLQMGMQGAKVYNSKPQSIGNFMSCGSRAPLLCGAQDGREMGSNNNLV DCVVQSDYPETLDGSFLTLGVGVNTESRSKANALSRDFIGKIDGAIKMQLNPSHVQSG YESSFSPDFRMAVALSDNQTYAGGFSSIEENAVGLSSLKHNLDGLHSIVQNAGESSNV SAFAGTVQNAGESSNVSAFAGPVQNVDSCSLSEYHLGVSDSTSSNFSLSPSQMLPMPQ SHVSHPLLTPDDQKFCTGFANIDPFHGLSGVSPNIVHISSQSGLPPNQSFLGLPGVSP IVHGSSQFGLPPNEGFHSLCCESQIVHSSRQSGLPVQAQHRMAPWPSLSSYMTSKYAT LASDQLQKCNMGSIPCFQWGTSVASPVLGNIESTSNQYQSDQLFACDGGASQVSTTIP FSKNSGNKLSASDGTAAEVVSITPSFKNIGVQPSSTGQVISFSRESGPANLLAGPSRK RKAAQSPPATPQVQIKKTRSAKPSIRSSTLYRARDAPFVSPLPPVVSQGSLLLMRH" CDS join(4882647..4884117,4888476..4888563,4889227..4889272) /locus_tag="TCM_027548" /note="encoded by transcript variant 10; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 10" /protein_id="EOY26135.1" /translation="MGHGKSNNVDKIPTFSPQLQNTEEIGFQSLSNEAVCFDGLTGVE TVDAPLNELSHFPSSHLGDMSLKGIDWMIHGSQLDSYQNFMVHPHVMNGTGYVPSQYS TLENIASNTGGLQMGMQGAKVYNSKPQSIGNFMSCGSRAPLLCGAQDGREMGSNNNLV DCVVQSDYPETLDGSFLTLGVGVNTESRSKANALSRDFIGKIDGAIKMQLNPSHVQSG YESSFSPDFRMAVALSDNQTYAGGFSSIEENAVGLSSLKHNLDGLHSIVQNAGESSNV SAFAGTVQNAGESSNVSAFAGPVQNVDSCSLSEYHLGVSDSTSSNFSLSPSQMLPMPQ SHVSHPLLTPDDQKFCTGFANIDPFHGLSGVSPNIVHISSQSGLPPNQSFLGLPGVSP IVHGSSQFGLPPNEGFHSLCCESQIVHSSRQSGLPVQAQHRMAPWPSLSSYMTSKYAT LASDQLQKCNMGSIPCFQWGTSVASPVLGNIESTSNQYQSDKLSASDGTAAEVVSITP SFKNIGVQPSSTYRSSNFIFKGKWTC" CDS join(4882647..4884121,4886340..4886379) /locus_tag="TCM_027548" /note="encoded by transcript variant 11; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 11" /protein_id="EOY26136.1" /translation="MGHGKSNNVDKIPTFSPQLQNTEEIGFQSLSNEAVCFDGLTGVE TVDAPLNELSHFPSSHLGDMSLKGIDWMIHGSQLDSYQNFMVHPHVMNGTGYVPSQYS TLENIASNTGGLQMGMQGAKVYNSKPQSIGNFMSCGSRAPLLCGAQDGREMGSNNNLV DCVVQSDYPETLDGSFLTLGVGVNTESRSKANALSRDFIGKIDGAIKMQLNPSHVQSG YESSFSPDFRMAVALSDNQTYAGGFSSIEENAVGLSSLKHNLDGLHSIVQNAGESSNV SAFAGTVQNAGESSNVSAFAGPVQNVDSCSLSEYHLGVSDSTSSNFSLSPSQMLPMPQ SHVSHPLLTPDDQKFCTGFANIDPFHGLSGVSPNIVHISSQSGLPPNQSFLGLPGVSP IVHGSSQFGLPPNEGFHSLCCESQIVHSSRQSGLPVQAQHRMAPWPSLSSYMTSKYAT LASDQLQKCNMGSIPCFQWGTSVASPVLGNIESTSNQYQSGDCMATLSSSPRWC" mobile_element complement(4890776..4890846) /note="source:INTACT93F_F345_scaffold_2-int 16889 16962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4890818..4890871) /note="source:INTACT82F_F344_scaffold_2-int 8843 8897" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4892929..4895975 /locus_tag="TCM_027549" /note="dbxref CacaoGD:Thecc1EG027549" mRNA join(4892929..4893270,4894037..4894097,4894960..4895288, 4895543..4895975) /locus_tag="TCM_027549" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g23580.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s18300.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00579t00002" CDS join(4893121..4893270,4894037..4894097,4894960..4895288, 4895543..4895746) /locus_tag="TCM_027549" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26137.1" /db_xref="Phytozome:POPTR_0003s18300.1" /db_xref="TAIR:AT1G80940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLP2" /translation="MEKENKKVDAAALEGFSPVTTTRIFWKSRKRSGSVSSLFSLSLL GFYGNEASIELPSWWHPFNGFSKTENTSGRNLDKVTEETANMTPTKQEEETPDQENAP DPTTASELSERRKALFEPLEPIKNLNGQRPSAESLLPPPDFDAAIYPKGWLIGKKRKL VNVDVVESMRRIAVQEMNRKDREIDGLNEQLEEDARCLEHLQLQLLQEKSKRSDVERE NAMLQEQISMLMNMLQENESMGDEGPDEA" gene complement(4900334..4905557) /locus_tag="TCM_027550" /note="dbxref CacaoGD:Thecc1EG027550" mRNA complement(join(4900334..4901356,4903618..4903943, 4904138..4904244,4904356..4904529,4904633..4904893, 4905180..4905557)) /locus_tag="TCM_027550" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene15917" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038435t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s03330.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01859t00001" CDS complement(join(4900761..4901356,4903618..4903943, 4904138..4904244,4904356..4904529,4904633..4904893, 4905180..4905296)) /locus_tag="TCM_027550" /note="paralog of Thecc1EG038435t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26138.1" /db_xref="Phytozome:POPTR_0001s03330.1" /db_xref="TAIR:AT2G24100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLP3" /translation="MVQLMSSGKRVGVKLEVEEALEDGLAPLHKRSKLDPSLQEGNIE SGDFPIPPSLYNPLDEPSPLGLRLKKSPSFLDLIQMKLSQQNANKLTALKKKDSKGTS VSCGQDKLKASNFPASVLRIGSWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKVE IQWSDIVAIKANYPEDGPGTLDVALARQPLFFRETNPQPRKHTLWQATSDFTGGQASI HRQHFLQCPQGLLGKHFEKLIQCDPRLNFLSKQRETLLESPYFEPKISGFKDSNEAGH KVELEGEEGPTIFGLQDTSSPAAGQSSSCKKEQDFSGRAAEHFCQGTPSPSSVMDTNA IEEIRGNTANEGKLLRQWDQIRFSGLHASMSMSDLVNHIGNCISEQMTSSNDDLQGQD ILEEITQYLLNDSLHASASDEQCLMARVNSLCCLLQKDSAVAPDFPTKKDVAVDVHDH GKNVEGSSVSAAARESKTAESFPVSMDESNDVSNSKRPQAMSRKDSVGDLLLNLPRIA SLPQFLFNIMEDSDIQAR" gene complement(4907379..4909836) /locus_tag="TCM_027551" /note="dbxref CacaoGD:Thecc1EG027551" mRNA complement(join(4907379..4908269,4908945..4909024, 4909661..4909836)) /locus_tag="TCM_027551" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.39 coverage" CDS complement(4907730..4907936) /locus_tag="TCM_027551" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26139.1" /translation="MAPATQGCSAIIPRPTIEQPKKLSSWLQPPNVVVLARGIYFLLF HSFFSNVLGVLQSNFSKEKETFYQ" gene 4911421..4912342 /locus_tag="TCM_027552" /note="dbxref CacaoGD:Thecc1EG027552" mRNA 4911421..4912342 /locus_tag="TCM_027552" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.45 coverage" CDS 4911506..4911736 /locus_tag="TCM_027552" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26140.1" /translation="MSITAAFTRGTSHATKYQVGALNPLLLTHGTPHVTKYQIRTSSP PLPTHETPYAIKCQVEASSPLFYTQLSINKQL" mobile_element 4912382..4912446 /note="source:INTACT741_F17_scaffold_3-int 1380 1446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4912569..4915694 /note="source:INTACT741_F17_scaffold_3-int 1629 4708" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4915690..4916050 /note="source:CACAO_M_E3326_F17_scaffold_1 5623 5985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4916046..4916657 /note="source:CACAO_M_E34540_F17_scaffold_5 6160 6774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4917018..4919583 /note="source:CACAO_M_S_E85177_F5_scaffold_7 17614 20246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4919480..4919599) /note="source:CACAO_M_E1841_F5_scaffold_1 22956 23081" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4920746..4922933) /locus_tag="TCM_027554" /note="dbxref CacaoGD:Thecc1EG027554" mRNA complement(join(4920746..4921055,4921209..4921277, 4922597..4922933)) /locus_tag="TCM_027554" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.75 coverage" CDS complement(join(4920906..4921055,4921209..4921277)) /locus_tag="TCM_027554" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26141.1" /translation="MEFREYDNLKSSFVVARENWAFNNIIVHQINEPESQKHELWFAI RKTKAWFSKQEFYLVTGLKFDPLLDIFL" gene 4927028..4938366 /locus_tag="TCM_027555" /note="dbxref CacaoGD:Thecc1EG027555" mRNA join(4927028..4927515,4927639..4927699,4931785..4932090, 4932284..4932673,4933045..4933162,4936821..4937044, 4937383..4937940) /locus_tag="TCM_027555" /product="Phosphatase 2C family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb07g028300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025174t3" /inference="similar to AA sequence:ricco:28966.m000537" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc749t2; alternateUTRof:Thecc1EG027555t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2043t4" mRNA join(4927028..4927290,4927316..4927515,4927639..4927699, 4931428..4931639,4931785..4932090,4932284..4932673, 4933045..4933162,4936821..4937151,4937383..4937411) /locus_tag="TCM_027555" /product="Phosphatase 2C family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Sb07g028300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025174t3" /inference="similar to AA sequence:ricco:28966.m000537" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc738t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2043t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc736t12_C2" mRNA join(4927344..4927515,4927639..4927699,4931428..4931637, 4931783..4932090,4932284..4932673,4933045..4933162, 4936821..4937044,4937383..4937884,4937941..4938366) /locus_tag="TCM_027555" /product="Phosphatase 2C family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb07g028300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025174t3" /inference="similar to AA sequence:ricco:28966.m000537" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2043t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2043t4" mRNA join(4927344..4927515,4927639..4927699,4931428..4931637, 4931783..4932090,4932284..4932673,4933045..4933162, 4936821..4937044,4937383..4937940,4937997..4938139) /locus_tag="TCM_027555" /product="Phosphatase 2C family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb07g028300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025174t3" /inference="similar to AA sequence:ricco:28966.m000537" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2043t3; alternateUTRof:Thecc1EG027555t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2043t4" CDS join(4931794..4932090,4932284..4932673,4933045..4933162, 4936821..4937044,4937383..4937884,4937941..4937960) /locus_tag="TCM_027555" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28966.m000537; paralog of Thecc1EG025174t3" /codon_start=1 /product="Phosphatase 2C family protein isoform 1" /protein_id="EOY26142.1" /db_xref="TAIR:AT1G16220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXZ4" /translation="MGSCCSFIAKGKSGSKRDDQVTDASTATNTTSCASPKKQKQRQG SGRWRKKSSGLVPMDEAELHLISGRMFLNGASNVACLYTQQGKKGTNQDAMLVWENFC SRSDTMFCGVFDGHGPYGHMVAKKARDSLPIILCTQWKDSLAGDWSSLNKSENAPDNT IPEDTASLSMDDECCESLEIEENEQLPEMYLPLKRSMLKAFKLMDKELKLHPTIDCFC SGTTAVTLVKQGQHLIIGNVGDSRAVLAARDKDNSLIAIQLTVDLKPDLPREAARIQQ CKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDVFYRCLTERD EFIILATDGVWDVLSNKEAVDIVASAPSRSTAARALVDCATRAWRLKYPTSKNDDCAV VCLFLEHLTASNGAVEEHDITKIPKESGERMVGVDDNNRDSHALSLGQSGTLQGSNEI VPATESIEERLPSNLPGQSRRSLAECISVADDEWSALEGITRVNSLLSLPRFLSGDKR STSWRKWL" CDS join(4931794..4932090,4932284..4932673,4933045..4933162, 4936821..4937044,4937383..4937904) /locus_tag="TCM_027555" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28966.m000537; paralog of Thecc1EG025174t3" /codon_start=1 /product="Phosphatase 2C family protein isoform 1" /protein_id="EOY26143.1" /db_xref="TAIR:AT1G16220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXZ4" /translation="MGSCCSFIAKGKSGSKRDDQVTDASTATNTTSCASPKKQKQRQG SGRWRKKSSGLVPMDEAELHLISGRMFLNGASNVACLYTQQGKKGTNQDAMLVWENFC SRSDTMFCGVFDGHGPYGHMVAKKARDSLPIILCTQWKDSLAGDWSSLNKSENAPDNT IPEDTASLSMDDECCESLEIEENEQLPEMYLPLKRSMLKAFKLMDKELKLHPTIDCFC SGTTAVTLVKQGQHLIIGNVGDSRAVLAARDKDNSLIAIQLTVDLKPDLPREAARIQQ CKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDVFYRCLTERD EFIILATDGVWDVLSNKEAVDIVASAPSRSTAARALVDCATRAWRLKYPTSKNDDCAV VCLFLEHLTASNGAVEEHDITKIPKESGERMVGVDDNNRDSHALSLGQSGTLQGSNEI VPATESIEERLPSNLPGQSRRSLAECISVADDEWSALEGITRVNSLLSLPRFLSGDKR STSWRKWL" CDS join(4931794..4932090,4932284..4932673,4933045..4933162, 4936821..4937044,4937383..4937904) /locus_tag="TCM_027555" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:28966.m000537; paralog of Thecc1EG025174t3" /codon_start=1 /product="Phosphatase 2C family protein isoform 1" /protein_id="EOY26145.1" /db_xref="TAIR:AT1G16220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXZ4" /translation="MGSCCSFIAKGKSGSKRDDQVTDASTATNTTSCASPKKQKQRQG SGRWRKKSSGLVPMDEAELHLISGRMFLNGASNVACLYTQQGKKGTNQDAMLVWENFC SRSDTMFCGVFDGHGPYGHMVAKKARDSLPIILCTQWKDSLAGDWSSLNKSENAPDNT IPEDTASLSMDDECCESLEIEENEQLPEMYLPLKRSMLKAFKLMDKELKLHPTIDCFC SGTTAVTLVKQGQHLIIGNVGDSRAVLAARDKDNSLIAIQLTVDLKPDLPREAARIQQ CKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDVFYRCLTERD EFIILATDGVWDVLSNKEAVDIVASAPSRSTAARALVDCATRAWRLKYPTSKNDDCAV VCLFLEHLTASNGAVEEHDITKIPKESGERMVGVDDNNRDSHALSLGQSGTLQGSNEI VPATESIEERLPSNLPGQSRRSLAECISVADDEWSALEGITRVNSLLSLPRFLSGDKR STSWRKWL" CDS join(4931794..4932090,4932284..4932673,4933045..4933162, 4936821..4937062) /locus_tag="TCM_027555" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28966.m000537; paralog of Thecc1EG025174t3" /codon_start=1 /product="Phosphatase 2C family protein isoform 3" /protein_id="EOY26144.1" /db_xref="TAIR:AT1G79630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXZ4" /translation="MGSCCSFIAKGKSGSKRDDQVTDASTATNTTSCASPKKQKQRQG SGRWRKKSSGLVPMDEAELHLISGRMFLNGASNVACLYTQQGKKGTNQDAMLVWENFC SRSDTMFCGVFDGHGPYGHMVAKKARDSLPIILCTQWKDSLAGDWSSLNKSENAPDNT IPEDTASLSMDDECCESLEIEENEQLPEMYLPLKRSMLKAFKLMDKELKLHPTIDCFC SGTTAVTLVKQGQHLIIGNVGDSRAVLAARDKDNSLIAIQLTVDLKPDLPREAARIQQ CKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDVFYRCLTERD EFIILATDGVYSSS" mobile_element 4938385..4938447 /note="source:CACAO_M_E12463_F12_scaffold_3 4615 4692" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4942136..4942778 /note="source:CACAO_on_S_E390_scaffold_9 2834 3476" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4942779..4953744 /note="source:CACAO_M_E44570_F33_scaffold_6 1 10954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4953745..4955125) /note="source:CACAO_M_E49857_F85_scaffold_7 1319 2696" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4955227..4956498) /note="source:CACAO_M_E49857_F85_scaffold_7 1 1273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4959310..4961105 /note="source:CACAO_M_E56927_F33_scaffold_8 1 1796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4961206..4962367 /note="source:CACAO_M_E56803_F33_scaffold_8 1807 2967" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4963940..4964202 /note="source:CACAO_M_E9395_F12_scaffold_2 22867 23129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4965132..4965199) /note="source:INTACT189_F49_scaffold_5-int 17863 17930" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4966349..4968662 /note="source:INTACT236_F12_scaffold_10-int 5754 8089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4968221..4968852 /note="source:scaffold_6_CACTA_0710 14741 15370" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4968851..4969125) /note="source:CACAO_M_E22348_F13_scaffold_3 3978 4258" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4969370..4970554) /note="source:CACAO_Mariner_E229_scaffold_9 9441 10646" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(4970464..4970570) /note="source:CACAO_M_S_E99574_F14_scaffold_9 11052 11159" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4970553..4971854) /note="source:CACAO_M_E52278_F17_scaffold_7 11060 12374" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4973817..4975595 /note="source:CACAO_M_E43348_F5_scaffold_5 3689 4991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4975520..4976426) /note="source:CACAO_M_E84908_F12_scaffold_10 2553 3416" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4976555..4976696) /note="source:CACAO_M_E11662_F12_scaffold_2 6521 6649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4977366..4978807) /note="source:CACAO_M_E56710_F44_scaffold_8 7706 9124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4979241..4989533 /note="source:INTACT447_F13_scaffold_6-int 1 10293" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4990101..4995443 /note="source:CACAO_M_E3326_F17_scaffold_1 1922 7250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4995646..5000346 /note="source:INTACT741_F17_scaffold_3-int 4984 9663" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5000900..5004841) /locus_tag="TCM_027559" /note="dbxref CacaoGD:Thecc1EG027559" mRNA complement(join(5000900..5001098,5002288..5002368, 5004692..5004841)) /locus_tag="TCM_027559" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(5000948..5001098,5002288..5002368, 5004692..5004786)) /locus_tag="TCM_027559" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26146.1" /translation="MLVDLLPHSNLYIVNGYFEESTKYMDQFKPSRAWWKIKIKLEGK DKLLKVSLRFQIYLRPIISYIVCKPSRYTTSPSIRHWKTIGRVLEYLKGTLELGLFYG NYSTIL" mobile_element 5001528..5001623 /note="source:scaffold_8_CACTA_0860 496 590" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5002488..5002613) /note="source:INTACT405F_F91_scaffold_4-int 18718 18839" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5004283..5004451) /note="source:scaffold_8_CACTA_0860 591 760" /mobile_element_type="transposon:TIR/CACTA" gene 5007481..5010058 /locus_tag="TCM_027560" /note="dbxref CacaoGD:Thecc1EG027560" mRNA join(5007481..5007950,5008523..5010058) /locus_tag="TCM_027560" /product="Eukaryotic aspartyl protease family protein" /inference="alignment:exonerate-protein:2:frave:gene15915" /inference="similar to AA sequence:frave:gene15915" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05727t00001" CDS join(5007776..5007950,5008523..5009793) /locus_tag="TCM_027560" /note="dbxref frave:gene15915" /codon_start=1 /product="Eukaryotic aspartyl protease family protein" /protein_id="EOY26147.1" /db_xref="TAIR:AT1G79720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVV5" /translation="MVKAMALLLFPSMLSLLVFSLILHNGVVHCFGEKKLLKLQHFQW KQKWDASTCLSQKSRKEKGATILEMKHRDYCYGGGVKDWNKLLQKRLILDDLRVQSLQ ARIKNKAFGKTEGVSDTRIPLTSGVELGTLNYIVTVELGGRKMRVIVDTGSDLTWVQC QPCKSCYNQKEPLFNPSASPSYQTVSCNSSTCQSLAFATGNTGICGNNPPTCNYIVSY GDGSYTRGELAHDHLSLGKTPVDNFVFGCGRNNKGLFGGASGLMGLGRSSISLVSQTT DIFGGFFSYCLPSTQAGASGSLVLGGNSSVYKTSSAISYTRMIPNPQLSTFYFLNLTG VSVGGVTLPDSTFGKGAMLIDSGTVITRLPPSIYKALKAEFMKQFSGFPSAPAFSILD TCFNLSAYQEVDVPTIKMQFEGNAEMNVDVTGVFYFVKTDASQVCLALASLSFEDEIG IIANYQQRNQRVIYDTKKAKLGFAHESCSFT" gene complement(5010427..5016647) /locus_tag="TCM_027561" /note="dbxref CacaoGD:Thecc1EG027561" mRNA complement(join(5010427..5010523,5010605..5011401, 5012231..5012401,5012532..5012627,5013562..5013821, 5015802..5016647)) /locus_tag="TCM_027561" /product="Major facilitator superfamily protein" /inference="alignment:exonerate- protein:2:frave:gene15914.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036889t1" /inference="similar to AA sequence:frave:gene15914" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc881t5" CDS complement(join(5010808..5011401,5012231..5012401, 5012532..5012627,5013562..5013821,5015802..5016189)) /locus_tag="TCM_027561" /note="dbxref frave:gene15914; paralog of Thecc1EG036889t1" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY26148.1" /db_xref="TAIR:AT1G79710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BJK5" /translation="MEEQEEKETKQPRHQDSGGNHTRRNNVRKAFGEMMLRPLQWLKM LGEELHWSFVLGVVIVYGISQGFGVGLSRVSTQYYMKDVQKVQPSQAQVLIGVIHFPW IVKPLWGLLTDVVPIFGYRRRPYFIFAGLLGVISMLVLSLHKSLHLAFALLSLVAGSA GIAIADVAIDACVTQHTISHPSLAGDMQSLCGLSSSIRALIGFSLSGFFVHLAGAKGV FGLLSIPASLVVLVGILLRESHVRNFAYKRVKEKLVDASKTMWTTLKCQDVWRPCLYM YLSLALGLHIHEGMFYWYTDAKEGPSFSQEVVGSIFSVGAVGSLFGVLLYQNFLKNHP FRDVLFWAQLLYGMSGLLDLVLVLRINLKLGMPDYIFVVIDEAVSRLIGRIKWMPFLV LSSKLCPAGIEGTFFALIMSIDHIGLLSSAWSGGLVLHILNVTRTQFDNLWIAILIRS LLRLIPIGFLFLIPRSDPKLSILPSEMLRTKKSNDILEQENIEMASLVNSID" mobile_element 5016719..5016825 /note="source:scaffold_8_CACTA_0860 590 697" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5017394..5017503) /note="source:scaffold_8_CACTA_0860 430 538" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5020259..5020361) /note="source:INTACT336_F12_scaffold_2-int 2526 2626" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5021262..5024956) /locus_tag="TCM_027562" /note="dbxref CacaoGD:Thecc1EG027562" mRNA complement(join(5021262..5021652,5021796..5021859, 5023197..5023280,5024539..5024645,5024882..5024956)) /locus_tag="TCM_027562" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(5021453..5021652,5021796..5021859, 5023197..5023280,5024539..5024586)) /locus_tag="TCM_027562" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26149.1" /translation="MEGTGEFVDDKSKTVNVVSPPIKARELHPRTSSLSISKIPTLDT LPTRGNEKLILKPCGVSVDIPAATSKSTYGLMPSTVVARVSSSELNGYQEIKNDMKEL KIDVHDIKSTMKAILESFPNLADGSSSSQ" mobile_element complement(5021729..5023475) /note="source:CACAO_M_S_E98180_F42_scaffold_8 8294 10043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5023577..5024335 /note="source:CACAO_M_S_E13904_F42_scaffold_2 2338 3097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5028464..5029895 /note="source:CACAO_M_S_E5670_F9_scaffold_2 10613 12057" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5033748..5033838) /note="source:CACAO_M_E5899_F5_scaffold_2 20715 20796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5033815..5033882 /note="source:scaffold_8_CACTA_0860 500 567" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5035089..5035242) /note="source:scaffold_8_CACTA_0860 587 738" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5035194..5035293) /note="source:INTACT146F_F14_scaffold_2-int 13459 13557" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5037846..5040759) /note="source:CACAO_M_S_E50638_F7_scaffold_4 53 2947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5040370..5040823 /note="source:CACAO_M_E84908_F12_scaffold_10 8819 9268" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5040880..5041638 /note="source:CACAO_M_E36038_F90_scaffold_5 2668 3434" /mobile_element_type="retrotransposon:LTR/Copia" gene 5045297..5060876 /locus_tag="TCM_027563" /note="dbxref CacaoGD:Thecc1EG027563" mRNA join(5045297..5045468,5048709..5049182,5060830..5060876) /locus_tag="TCM_027563" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element 5046165..5046220 /note="source:INTACT287_F193_scaffold_2-int 9382 9437" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5046591..5047009 /note="source:scaffold_9_CACTA_0931 204 623" /mobile_element_type="transposon:TIR/CACTA" CDS 5048738..5048938 /locus_tag="TCM_027563" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26150.1" /translation="MMHQETQSTSLEIEQTTEEAHLDKGKAIDTDPVAKKTVGKSRKT MVTKTKAFRRRKSTRLALTSTQ" mobile_element 5050318..5050958 /note="source:scaffold_9_CACTA_0931 1 645" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5055387..5055463 /note="source:scaffold_9_CACTA_0929 7410 7510" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5057820..5057940 /note="source:INTACT293_F14_scaffold_5-int 11328 11450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5060876..5060961 /note="source:INTACT196F_F12_scaffold_3-int 9204 9297" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5062442..5062501 /note="source:INTACT264_F12_scaffold_6-int 1040 1100" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5063523..5073675 /note="source:CACAO_M_E44582_F12_scaffold_6 1 10153" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5076607..5076671 /note="source:CACAO_M_E59600_F12_scaffold_9 16373 16432" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5079228..5080385 /locus_tag="TCM_027566" /note="dbxref CacaoGD:Thecc1EG027566" mRNA 5079228..5080385 /locus_tag="TCM_027566" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene23768" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029243t1" /note="quality class is strong-utrpoor-expresste, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10098t00001" gene 5079384..5083427 /locus_tag="TCM_027567" /note="dbxref CacaoGD:Thecc1EG027567" mRNA join(5079384..5079483,5080791..5080935,5081132..5081577, 5081805..5082329,5083140..5083427) /locus_tag="TCM_027567" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete" CDS 5079892..5080176 /locus_tag="TCM_027566" /note="paralog of Thecc1EG029243t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26151.1" /translation="MSEIGIALCVDMPAALTNESTTEQKEFFAKRDIVNQMCLHAIKR TISKHLLSGLQTTETTKELYEAIGERYQKSNKYEARNLMSELTRMKYDSV" CDS join(5080832..5080935,5081132..5081577,5081805..5082274) /locus_tag="TCM_027567" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26152.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BKB9" /translation="MDKLGYYFGIGNGKVYLFLNSKAIGEFKLVDNLYRCIRGKMTKT NKKRATHSNDLLEIMHTNISGPLIPTLCGNKYFVTFINYLSCFGYLYLIDEKSDAYEK FKIFKIEVEKQLKKAIKIVRSNQRGEYYGKYGTIGQHMGLFTKYLQECGIVAQYTMLG SLEQNVVSEIRNCNFKEMMKSMISYLNHSKGYRFFCPTCGTKVIESQVAKFLELNVAN KDMTEVVDCSEPIRHVIIHLPASEGSVVPIAIERDDAREYDVSSPPQDFVLALIDVHP IQENEVKVPLRRSSRQRKLAISNDYMVFLRESDYDISHVEDLVTFNYTINCTQSAIWM DAIKD" mobile_element complement(5084835..5084972) /note="source:CACAO_M_E71500_F12_scaffold_10 993 1125" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5084891..5085035) /note="source:scaffold_1_CACTA_0011 3609 3754" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5085046..5085092) /note="source:scaffold_4_CACTA_0493 1585 1631" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5085052..5088212) /note="source:CACAO_M_E52239_F256_scaffold_7 19810 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5088392..5091102 /note="source:CACAO_M_E44592_F369_scaffold_6 1 2711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5091109..5091594 /note="source:CACAO_M_E3248_F5_scaffold_1 17063 17557" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5091609..5092032) /note="source:INTACT83_F5_scaffold_9-int 12095 12536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5092135..5092750 /note="source:CACAO_M_S_E64832_F14_scaffold_5 2250 2866" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5092537..5093406) /note="source:INTACT537_F22_scaffold_2-int 11504 12102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5092967..5094081 /note="source:INTACT646_F284_scaffold_3-int 3371 4471" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5093930..5094286) /note="source:CACAO_M_E58819_F24_scaffold_9 3005 3359" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5094939..5095045) /note="source:INTACT731_F12_scaffold_5-int 1038 1129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5094964..5095082 /note="source:CACAO_M_E24362_F12_scaffold_4 9278 9376" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5095456..5096036) /note="source:CACAO_M_E52564_F14_scaffold_7 680 1222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5096037..5098910 /note="source:CACAO_M_E44593_F15_scaffold_6 1 2846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5098924..5100111 /note="source:CACAO_M_E22348_F13_scaffold_3 14441 15631" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5100636..5101025) /note="source:INTACT83_F5_scaffold_9-int 11471 11911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5101026..5101091 /note="source:INTACT638_F90_scaffold_1-int 1174 1236" /mobile_element_type="retrotransposon:LTR/Copia" gene 5104315..5112311 /locus_tag="TCM_027569" /note="dbxref CacaoGD:Thecc1EG027569" mRNA join(5104315..5104760,5104853..5104935,5105064..5105072, 5105237..5105325,5105464..5105537,5105759..5105809, 5105988..5106064,5107025..5107674,5112189..5112311) /locus_tag="TCM_027569" /product="AP2 domain-containing transcription factor, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s18350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038442t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s18350.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1570t3" CDS join(5104600..5104760,5104853..5104935,5105064..5105072, 5105237..5105325,5105464..5105537,5105759..5105809, 5105988..5106064,5107025..5107593) /locus_tag="TCM_027569" /note="paralog of Thecc1EG038442t1" /codon_start=1 /product="AP2 domain-containing transcription factor, putative" /protein_id="EOY26153.1" /db_xref="Phytozome:POPTR_0003s18350.1" /db_xref="TAIR:AT1G16060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IM93" /translation="MAKISQKTQKNSTDHENGTTATVAKPTTKVKRTRKSVPRDCPPQ RSSVYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAAL KYWGQDTILNFPVSTYENELKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHN GRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWIRP NHQSNPNNSENPQQILNGDTNSTPSPNHDNIGIGFSIQPQSYSTSETSMTTPPRLDGE GGGGGAGNDNSASASSALGLLLQSSKFKEMLERTSATNCPSTPPERDLPRRSFPDDIQ TYFDCQDSSSYTEGDDIIFGHLNPFATPMFHCELDG" mobile_element complement(5109375..5109445) /note="source:CACAO_M_E12463_F12_scaffold_3 4585 4635" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5112035..5116833) /locus_tag="TCM_027570" /note="dbxref CacaoGD:Thecc1EG027570" mRNA complement(join(5112035..5112807,5112944..5113011, 5113276..5113368,5113465..5113554,5113700..5113796, 5113881..5113936,5114045..5114221,5115687..5115801, 5116177..5116833)) /locus_tag="TCM_027570" /product="Tubby like protein 8 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene15912" /inference="similar to AA sequence:Phytozome:POPTR_0001s03290.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1588t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1588t1" CDS complement(join(5112732..5112807,5112944..5113011, 5113276..5113368,5113465..5113554,5113700..5113796, 5113881..5113936,5114045..5114221,5115687..5115801, 5116177..5116658)) /locus_tag="TCM_027570" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tubby like protein 8 isoform 1" /protein_id="EOY26154.1" /db_xref="Phytozome:POPTR_0001s03290.1" /db_xref="TAIR:AT1G16070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLP7" /translation="MSDFKEPLVQRQASYTSPYVNPLTDLKHSRSCSEGNHATFTDNK ENVFFGVGKENAAPTTNNGSSSSSSSVAKRITHLKSLSTIGTFDASKEVSSYKSLSTG KVLKESSLQFCMQMNEPDKAFGCKLWDPIDSENSNSLNIWDYSDSEAAPASSWSTLPN RALLCRPLPLDIGRCTCVIVKESSPEGFAGGTLYSLYTNEGQGRQDRKLAVAYHKRQN GKSMFSIAQNTKGILSNSDDSYIGLMTANLIGSKYNIWDQAGRTKSLNKQSNPLLGVI TFMPTIVTWTGNYRSMKVYIPKHQSMQMKNVTQMQHISGLPKDWEGKMDKIHKLFSRI PRYNNMLKKYELDFRDRGRAGLRIQSSVKNFQLTFEENGRQTILQLGRVDRYKYVMDF RYPLTGYQAFCICLASIDSKLCCAM" mobile_element 5113150..5113220 /note="source:CACAO_M_E12463_F12_scaffold_3 4692 4758" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(5113339..5113554,5113700..5113796, 5113881..5113936,5114045..5114221,5115687..5115801, 5116177..5116833)) /locus_tag="TCM_027570" /product="Tubby like protein 8 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene15912" /inference="similar to AA sequence:Phytozome:POPTR_0001s03290.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc528t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1588t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15716t2" CDS complement(join(5113396..5113554,5113700..5113796, 5113881..5113936,5114045..5114221,5115687..5115801, 5116177..5116658)) /locus_tag="TCM_027570" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tubby like protein 8 isoform 2" /protein_id="EOY26155.1" /db_xref="Phytozome:POPTR_0001s03290.1" /db_xref="TAIR:AT1G16070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLP7" /translation="MSDFKEPLVQRQASYTSPYVNPLTDLKHSRSCSEGNHATFTDNK ENVFFGVGKENAAPTTNNGSSSSSSSVAKRITHLKSLSTIGTFDASKEVSSYKSLSTG KVLKESSLQFCMQMNEPDKAFGCKLWDPIDSENSNSLNIWDYSDSEAAPASSWSTLPN RALLCRPLPLDIGRCTCVIVKESSPEGFAGGTLYSLYTNEGQGRQDRKLAVAYHKRQN GKSMFSIAQNTKGILSNSDDSYIGLMTANLIGSKYNIWDQAGRTKSLNKQSNPLLGVI TFMPTIVTWTGNYRSMKVYIPKHQSMQMKNVTQMQHISGLPKDWEGKMDKIHKLFSRI PRYNNVRICKGVFSHHTELRFWTSGFF" mobile_element 5121100..5122893 /note="source:CACAO_M_E4460_F86_scaffold_2 1 1794" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5122994..5124117 /note="source:CACAO_M_E40720_F86_scaffold_5 1803 2922" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5125588..5130420 /locus_tag="TCM_027572" /note="dbxref CacaoGD:Thecc1EG027572" mRNA join(5125588..5126190,5126876..5127093,5128518..5128610, 5129392..5129520,5129796..5129927,5130014..5130420) /locus_tag="TCM_027572" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016093001" /inference="similar to AA sequence:Phytozome:POPTR_0003s18370.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06476t00001" mRNA join(5125588..5126190,5126876..5127093,5129392..5129520, 5129796..5129927,5130014..5130420) /locus_tag="TCM_027572" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016093001" /inference="similar to AA sequence:Phytozome:POPTR_0003s18370.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:PASA:2:TSA:puevd3b026668t1a2; inference alignment:Newbler:10:TSA:cgbaL_g06476t00001" mRNA join(5125731..5126088,5126876..5127093,5129392..5129520, 5129796..5129927,5130014..5130284) /locus_tag="TCM_027572" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016093001" /inference="similar to AA sequence:Phytozome:POPTR_0003s18370.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00736t00003; inference alignment:Newbler:10:TSA:cgbaL_g06476t00001" CDS join(5125848..5126190,5126876..5127093,5128518..5128610, 5129392..5129520,5129796..5129927,5130014..5130127) /locus_tag="TCM_027572" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY26156.1" /db_xref="Phytozome:POPTR_0003s18370.2" /db_xref="TAIR:AT1G16080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVV9" /translation="MAALSSSSFLCSNSSKTISTRLTLFTSTLIFTPKKSISIVMAAT PTTTAAKVVPSVIVGGGRVGKALQDMGKGDDLLVKRGEPVPLDFEGPILVCTRNDDLE SVLEATPKSRWDDLVFFQNGMLEPWLQSKGLNDADQVLAYFAVSKLGEPPVDGKTDTN PEGLTAAYGKWASAIATRLHAGGLSCKVKRSAAIKLPQLLSSFSLDNVGYKNDFYEEM VLDKEAFQKQMLEKLIWISAFMLVGARHPGATVGDVEKEYRSEVSSLIAELASAAAGE KGITFEGAMEDRLCAYSRAVAHFPTAVKEFKWRNGWFYSISEKAIVEGKPDPCPLHTA WLKELKVV" CDS join(5125848..5126190,5126876..5127093,5129392..5129520, 5129796..5129927,5130014..5130127) /locus_tag="TCM_027572" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY26157.1" /db_xref="Phytozome:POPTR_0003s18370.2" /db_xref="TAIR:AT1G16080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVV9" /translation="MAALSSSSFLCSNSSKTISTRLTLFTSTLIFTPKKSISIVMAAT PTTTAAKVVPSVIVGGGRVGKALQDMGKGDDLLVKRGEPVPLDFEGPILVCTRNDDLE SVLEATPKSRWDDLVFFQNGMLEPWLQSKGLNDADQVLAYFAVSKLGEPPVDGKTDTN PEGLTAAYGKWASAIATRLHAGGLSCKVLDKEAFQKQMLEKLIWISAFMLVGARHPGA TVGDVEKEYRSEVSSLIAELASAAAGEKGITFEGAMEDRLCAYSRAVAHFPTAVKEFK WRNGWFYSISEKAIVEGKPDPCPLHTAWLKELKVV" CDS join(5125848..5126088,5126876..5127093,5129392..5129520, 5129796..5129927,5130014..5130127) /locus_tag="TCM_027572" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY26158.1" /db_xref="Phytozome:POPTR_0003s18370.2" /db_xref="TAIR:AT1G16080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVV9" /translation="MAALSSSSFLCSNSSKTISTRLTLFTSTLIFTPKKSISIVMAAT PTTTAAKVVPSVIVGGGRVGKALQDMGKGDDLLVKRDLVFFQNGMLEPWLQSKGLNDA DQVLAYFAVSKLGEPPVDGKTDTNPEGLTAAYGKWASAIATRLHAGGLSCKVLDKEAF QKQMLEKLIWISAFMLVGARHPGATVGDVEKEYRSEVSSLIAELASAAAGEKGITFEG AMEDRLCAYSRAVAHFPTAVKEFKWRNGWFYSISEKAIVEGKPDPCPLHTAWLKELKV V" gene complement(5130531..5145882) /locus_tag="TCM_027573" /note="dbxref CacaoGD:Thecc1EG027573" mRNA complement(join(5130531..5131499,5132274..5132420, 5132502..5132592,5132675..5132769,5134327..5134410, 5135192..5135360,5135463..5135569,5136320..5136415, 5136499..5136576,5136903..5136968,5137521..5137602, 5137699..5137952,5138097..5138268,5138347..5138453, 5139733..5139819,5140753..5140834,5140943..5141076, 5142243..5142339,5142988..5143065,5145166..5145345, 5145540..5145882)) /locus_tag="TCM_027573" /product="Nudix hydrolase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s18380.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016092001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1885t5" mRNA complement(join(5131149..5131499,5132274..5132420, 5132502..5132592,5132675..5132769,5134327..5134410, 5135192..5135360,5135463..5135569,5136320..5136415, 5136497..5136576,5136903..5136968,5137521..5137605, 5137699..5137952,5138097..5138268,5138347..5138453, 5139733..5139819,5140753..5140834,5140943..5141076, 5142243..5142339,5142988..5143065,5145166..5145345, 5145540..5145757)) /locus_tag="TCM_027573" /product="Nudix hydrolase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s18380.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s18380.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1885t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1885t5" mRNA complement(join(5131149..5131499,5132274..5132423, 5132502..5132592,5132675..5132769,5134327..5134411, 5135192..5135360,5135463..5135569,5136320..5136415, 5136497..5136576,5136903..5136968,5137521..5137605, 5137699..5137952,5138097..5138268,5138347..5138453, 5139733..5139819,5140753..5140837,5140943..5141076, 5142243..5142339,5142988..5143065,5145166..5145345, 5145540..5145757)) /locus_tag="TCM_027573" /product="Nudix hydrolase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s18380.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s18380.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1885t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1885t5" CDS complement(join(5131446..5131499,5132274..5132420, 5132502..5132592,5132675..5132769,5134327..5134410, 5135192..5135360,5135463..5135569,5136320..5136415, 5136499..5136576,5136903..5136968,5137521..5137602, 5137699..5137952,5138097..5138268,5138347..5138453, 5139733..5139819,5140753..5140834,5140943..5141076, 5142243..5142339,5142988..5143065,5145166..5145345, 5145540..5145622)) /locus_tag="TCM_027573" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Nudix hydrolase isoform 1" /protein_id="EOY26159.1" /db_xref="Phytozome:GSVIVT01016092001" /db_xref="TAIR:AT1G79690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L831" /translation="MAEPPLQQQEYLDVLTKSGEKTGVSKPRGDVHRDGDYHRAVHVW IFAESTQELLLQKRAHCKDSWPGLWDISSAGHISAGDSSLITAQRELHEELGVVLPKD AFELIFIFLEECVINDGKFINNEYSDVYLVTTLDPIPLEAFTLQDTEVSEVKYLSYEE YRSRLAQEDAEYVPYDVNKQYGLLFDIIRRRYKENTEARSLALQKQLQRYASVSLTAE LTGLTDADKEALVLLIKAAKIMDEIFYLQVWYSNPVLREWLKEHADVSQLDRLKWMYY LINKSPWSCLDENEAFLTTADSAIKLLPEATKPITGWKGLEYKAAFPMLKPPGANFYP PDMDKMEFKLWKGSLKADQQQDAISFFSVIKRHSQVNWDSFLYNNIFDGTNDSAGSSH DLYIIPYSQEYHSFLTRASELLHKAGDLVRSPSLKRLLHSKADAFLSNDYYDSDIAWM ELDSELDVTIGPYETYEDALFGFKATFEAFIGVRDKKATAQLKLFGDNLQVLEQNLPM DDAYKSKDIIAAPIRVVQLIYNAGDVKGPQTIAFNLPNDERIVKDRGTAMVILKNVSE AKFEQILQPIADACITKEQHELVDFESFFTHTICHECCHGIGPHTIILPDGRKSTVRL ELQDLHSALEEAKADIVGLWALKFLIKKHLLPNSLTKSMYVSFLAGCFRSVRFGLEEA HGKGQALQFNWLLEKEAFILHPDETFAVNFDKVEEAVESLSRTILTIQAKGDKEGASL LLEKYCTMTQPLKVALQKLECIQVPVDIAPTFPAAQMLLE" CDS complement(join(5135563..5135569,5136320..5136415, 5136497..5136576,5136903..5136968,5137521..5137605, 5137699..5137952,5138097..5138268,5138347..5138453, 5139733..5139819,5140753..5140834,5140943..5141076, 5142243..5142339,5142988..5143065,5145166..5145345, 5145540..5145622)) /locus_tag="TCM_027573" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Nudix hydrolase isoform 2" /protein_id="EOY26160.1" /db_xref="Phytozome:POPTR_0003s18380.1" /db_xref="TAIR:AT1G79690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L831" /translation="MAEPPLQQQEYLDVLTKSGEKTGVSKPRGDVHRDGDYHRAVHVW IFAESTQELLLQKRAHCKDSWPGLWDISSAGHISAGDSSLITAQRELHEELGVVLPKD AFELIFIFLEECVINDGKFINNEYSDVYLVTTLDPIPLEAFTLQDTEVSEVKYLSYEE YRSRLAQEDAEYVPYDVNKQYGLLFDIIRRRYKENTEARSLALQKQLQRYASVSLTAE LTGLTDADKEALVLLIKAAKIMDEIFYLQVWYSNPVLREWLKEHADVSQLDRLKWMYY LINKSPWSCLDENEAFLTTADSAIKLLPEATKPITGWKGLEYKAAFPMLKPPGANFYP PDMDKMEFKLWKGSLKADQQQDAISFFSVIKRHSQVNWDSFLYNNIFDGTNDSAGSSH DLYIIPYSQEYHSFLTRASELLHKAGDLVRSPSSLKRLLHSKADAFLSNDYYDSDIAW MELDSELDVTIGPYETYEDALFGFKATFEAFIGVRDKKATAQLKLFGDNLQVFWNKTF LWMMHTNQRISLLLQFVLFSLFIMQGM" CDS complement(join(5135563..5135569,5136320..5136415, 5136497..5136576,5136903..5136968,5137521..5137605, 5137699..5137952,5138097..5138268,5138347..5138453, 5139733..5139819,5140753..5140837,5140943..5141076, 5142243..5142339,5142988..5143065,5145166..5145345, 5145540..5145622)) /locus_tag="TCM_027573" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Nudix hydrolase isoform 3" /protein_id="EOY26161.1" /db_xref="Phytozome:POPTR_0003s18380.1" /db_xref="TAIR:AT1G79690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L831" /translation="MAEPPLQQQEYLDVLTKSGEKTGVSKPRGDVHRDGDYHRAVHVW IFAESTQELLLQKRAHCKDSWPGLWDISSAGHISAGDSSLITAQRELHEELGVVLPKD AFELIFIFLEECVINDGKFINNEYSDVYLVTTLDPIPLEAFTLQDTEVSEVKYLSYEE YRSRLAQEDAEYVPYDVNKQYGLLFDIIRRRRYKENTEARSLALQKQLQRYASVSLTA ELTGLTDADKEALVLLIKAAKIMDEIFYLQVWYSNPVLREWLKEHADVSQLDRLKWMY YLINKSPWSCLDENEAFLTTADSAIKLLPEATKPITGWKGLEYKAAFPMLKPPGANFY PPDMDKMEFKLWKGSLKADQQQDAISFFSVIKRHSQVNWDSFLYNNIFDGTNDSAGSS HDLYIIPYSQEYHSFLTRASELLHKAGDLVRSPSSLKRLLHSKADAFLSNDYYDSDIA WMELDSELDVTIGPYETYEDALFGFKATFEAFIGVRDKKATAQLKLFGDNLQVFWNKT FLWMMHTNQRISLLLQFVLFSLFIMQGM" mobile_element complement(5135959..5136017) /note="source:CACAO_M_E12463_F12_scaffold_3 4684 4741" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5145808..5176061) /locus_tag="TCM_027574" /note="dbxref CacaoGD:Thecc1EG027574" mRNA complement(join(5145808..5145901,5167364..5167510, 5168079..5168231,5168618..5168822,5168911..5169060, 5169376..5169539,5175772..5176061)) /locus_tag="TCM_027574" /product="Target of rapamycin-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007272t2" /inference="similar to AA sequence:Phytozome:POPTR_0009s08790.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.52 coverage" mobile_element complement(5150147..5150322) /note="source:INTACT405F_F91_scaffold_4-int 7468 7636" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5151631..5151727 /note="source:CACAO_M_E5326_F22_scaffold_2 3427 3513" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5151697..5152340) /note="source:CACAO_M_E48452_F5_scaffold_6 8828 9480" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5152333..5153775) /note="source:INTACT262_F12_scaffold_3-int 8600 10096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5153766..5153780) /note="source:scaffold_1_CACTA_0011 3754 3767" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5153781..5163977 /note="source:CACAO_M_E44596_F12_scaffold_6 1 10197" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5163922..5163999 /note="source:CACAO_Mariner_E229_scaffold_9 10588 10671" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 5163977..5165401 /note="source:scaffold_9_CACTA_0946 447 1869" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5165887..5166002) /note="source:CACAO_M_S_E1795_F14_scaffold_1 9095 9214" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5166407..5169965 /note="source:scaffold_6_CACTA_0703 1 3559" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(5167397..5167510,5168079..5168231, 5168618..5168822,5168911..5169060,5169376..5169539, 5175772..5175804)) /locus_tag="TCM_027574" /note="paralog of Thecc1EG007272t2" /codon_start=1 /product="Target of rapamycin-like protein" /protein_id="EOY26162.1" /db_xref="Phytozome:POPTR_0009s08790.1" /db_xref="TAIR:AT1G50030.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I4X6" /translation="MIMPRLSTDVMEAGGEGGHEEEGSDGSIGNSINDNNNSNNSSGH KHGHSRSISYGRDEKGIFEYLRPSLEVLACVGNITKAMGHAVESLVRCLLDVMFSAGL SPTLIEALEQITVSIPSLLSTIQDRLLDSISLVLLKSPYFQARPAVALVRGTAADIPQ PMSELSGSALVQLALQTLARFNFRLMEKLLIVAVADADVSVRHSIFSSLHGNRGFDDF LAQADSLSAVFAALNDEEKDLKIMREAKIREEMLDPKASLRRARAEASLVDGIS" mobile_element 5170268..5171962 /note="source:scaffold_6_CACTA_0703 3560 5254" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5172438..5172668 /note="source:CACAO_M_E3884_F22_scaffold_1 12936 13130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5176131..5178115) /note="source:INTACT334_F200_scaffold_2-int 3731 5727" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5176906..5199342) /locus_tag="TCM_027582" /note="dbxref CacaoGD:Thecc1EG027582" mRNA complement(join(5176906..5176972,5193042..5193104, 5197545..5197680,5198462..5198711,5198777..5198829, 5199149..5199342)) /locus_tag="TCM_027582" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene15897" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033822t1" /inference="similar to AA sequence:frave:gene15897" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b026680t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1602t3" mobile_element 5180579..5181577 /note="source:CACAO_M_E4753_F17_scaffold_2 1 1000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5181565..5187673 /note="source:CACAO_M_E34540_F17_scaffold_5 950 7085" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5181787..5188938 /locus_tag="TCM_027578" /note="dbxref CacaoGD:Thecc1EG027578" mRNA join(5181787..5181841,5184777..5185047,5185877..5186312, 5188914..5188938) /locus_tag="TCM_027578" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039067t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" gene 5181987..5188938 /locus_tag="TCM_027580" /note="dbxref CacaoGD:Thecc1EG027580" mRNA join(5181987..5182124,5183262..5183643,5185877..5186312, 5188914..5188938) /locus_tag="TCM_027580" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003695t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage" CDS join(5182081..5182124,5183262..5183640) /locus_tag="TCM_027580" /note="paralog of Thecc1EG003695t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26166.1" /translation="MRTTSNSSLYYLCDTQQNNPYSNTYNPGWRNHPNSSWNNNQGSS LASKSNFPLGFPSRAPMPEKKPLMEDMFMQYMTKIDAFIQSQTTSIRNLEAQVGQLAN ALNNKPHGTLPSDNEPNSKTEGKEHYKVINLRNGKKVS" CDS join(5184867..5185047,5185877..5186100) /locus_tag="TCM_027578" /note="paralog of Thecc1EG039067t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26165.1" /translation="MHKILLEENHKTTIEHQRRLNLIMKEVIKKDIIKWLDASIIYPI CDSSWVSPVQCVPKKRVLSQRKAKILHPIYYASRTLNEAPANYTTIEKELLAIIVAFN KFRSYLVRTKVIVYTDHAATNILSRRRIQNHV" mobile_element 5187771..5188919 /note="source:INTACT528_F17_scaffold_6-int 5204 6345" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(5188941..5188975,5193042..5193104, 5193602..5193693,5197545..5197680,5198462..5198711, 5198777..5198829,5199149..5199342)) /locus_tag="TCM_027582" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene15897" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033822t1" /inference="similar to AA sequence:frave:gene15897" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1602t3" CDS complement(join(5193087..5193104,5197545..5197680, 5198462..5198711,5198777..5198829,5199149..5199270)) /locus_tag="TCM_027582" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene15897; paralog of Thecc1EG033822t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 2" /protein_id="EOY26164.1" /db_xref="TAIR:AT1G30550.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I6D2" /translation="MINVMSAHNHRHINKKNTTSSKSISYWLGQNTILSYLTMLRQND KLQGQPKLLLFDGGGKKKQGKKKGKEKGIITPLIKKFWFQRYSLFSKYGKGIKIDEDG WYSVTPEEITIKHNEKCDGGGLVIDFFFGVSGNAIQFARLCSFVIAIYVDPQKVELAI NNARVYGVEDYIDFIVGDFLQLVPSLKTVNIN" CDS complement(join(5193664..5193693,5197545..5197680, 5198462..5198711,5198777..5198829,5199149..5199270)) /locus_tag="TCM_027582" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene15897; paralog of Thecc1EG033822t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 1" /protein_id="EOY26163.1" /db_xref="TAIR:AT1G30550.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I6D2" /translation="MINVMSAHNHRHINKKNTTSSKSISYWLGQNTILSYLTMLRQND KLQGQPKLLLFDGGGKKKQGKKKGKEKGIITPLIKKFWFQRYSLFSKYGKGIKIDEDG WYSVTPEEITIKHNEKCDGGGLVIDFFFGVSGNAIQFARLCSFVIAIYVDPQKVELAI NNARVYGVEDYIDFIVGDFLQLVPSLKGDMVFLSLP" gene complement(5199861..5201614) /locus_tag="TCM_027584" /note="dbxref CacaoGD:Thecc1EG027584" mRNA complement(join(5199861..5200479,5201589..5201614)) /locus_tag="TCM_027584" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1002t4_C1" CDS complement(5200164..5200379) /locus_tag="TCM_027584" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26167.1" /translation="METNDHTNVTDDGLSWKSMKALKPYFHHKFYFENDNPLSCSDAT VLDNLILNTSPIHSFLHASACASTAII" gene 5201371..5205686 /locus_tag="TCM_027585" /note="dbxref CacaoGD:Thecc1EG027585" mRNA 5201371..5205686 /locus_tag="TCM_027585" /product="Leucine-rich receptor-like protein kinase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011176" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031592t1" /inference="similar to AA sequence:ricco:30190.m011176" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1014t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1014t3" mRNA join(5201910..5201935,5202028..5205686) /locus_tag="TCM_027585" /product="Leucine-rich receptor-like protein kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011176" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031592t1" /inference="similar to AA sequence:ricco:30190.m011176" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.14 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1014t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1014t3" CDS 5201985..5205293 /locus_tag="TCM_027585" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m011176; paralog of Thecc1EG031592t1" /codon_start=1 /product="Leucine-rich receptor-like protein kinase family protein, putative isoform 1" /protein_id="EOY26168.1" /db_xref="TAIR:AT1G72300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUL4" /translation="MSCCSASYFVPMMIDDKETSLDASNSRLRPSATTFFMLHLLLRL LFLLLPSFLYISPCSAACNQDDHDSLLAFYSNLTLSPSSPLNWSPSKDCCSWEGIDCD TSSDDDRVTQLWLPSRGLSGHLSPSLVNLTRLTHLNLSRNRMSGSLPTGFFSSLNQLK VLDLSFNSLNGQLPLDFFSDNNNNLSPIEAVDLSSNRFSGTIQSNSFLQAARNLTIFN VSNNTFTGQVPSSICLNTSLTLLDLSYNKLNGEIRHGLGKCSKLQIFRAGFNNLSGTL PDDIYTVTSLQQLSLPLNHLSGRIQDAIAHLTQLTILELSSNEFGGAIPKDIGQLPKL ERLLLHVNNFTGSLPPSLMNCTSLITLNLRVNQLEGDLSAFNFSTLLRLSTLDLGNNN FTGTLPLSLYSCKSLTAVRLASNQLEGQISPAILALQSLSFLSISTNNLTNFTGAIRI LKGCKNLTTLILSKNFMNEAIPNDGNIVGEEGFQNLQILGLGGCNFTGQVPSWLANLK NLEVLDLSQNRITGLIPSWFGSLRNLFYIDLSDNLISGEFPKELTSLWALATQESNDE VDRSYLELPVFVLPYNATSQQLYNQLSSLPPAIYLRNNNLSGSIPEAIGQLKFLHVLD LGQNDFSGSIPDQISNLTNLEKLDLSGNRLSGQIPASLRGLHFLSSFSVAYNDLQGPI PSGGQFDTFTSSSFEGNPGLCGSIVQRSCPNAAGIAHSTTTPKSLNAKLIIGLVLGIC FGTGLVITLLALWILSKRRIIPGGDTDKIELDTFSSNSFSGVPPQTDKDASLVMLFPN KTNEVKDLTIFELLKATDNFNQENIIGCGGFGLVYKAILADGTKLAVKKLSGDFGLME REFKAEVEALSTAQHENLVSLQGYCVHEGFRLLIYSYMENGSLDYWLHEKADGPSQLD WPTRLKIARGASNGLAYMHQICEPHIVHRDIKSSNILLDDKFEAHVADFGLSRLILPY HTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGKRPVDMSRPKTSRE LVAWVQKMRSEGKQDEVFDPLLKGKGSYEEMLQVLDVACVCINQNPFKRPTIKEVVDW LKNVGTTISNQNKD" CDS 5202093..5205293 /locus_tag="TCM_027585" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011176; paralog of Thecc1EG031592t1" /codon_start=1 /product="Leucine-rich receptor-like protein kinase family protein isoform 2" /protein_id="EOY26169.1" /db_xref="TAIR:AT1G72300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MUL4" /translation="MLHLLLRLLFLLLPSFLYISPCSAACNQDDHDSLLAFYSNLTLS PSSPLNWSPSKDCCSWEGIDCDTSSDDDRVTQLWLPSRGLSGHLSPSLVNLTRLTHLN LSRNRMSGSLPTGFFSSLNQLKVLDLSFNSLNGQLPLDFFSDNNNNLSPIEAVDLSSN RFSGTIQSNSFLQAARNLTIFNVSNNTFTGQVPSSICLNTSLTLLDLSYNKLNGEIRH GLGKCSKLQIFRAGFNNLSGTLPDDIYTVTSLQQLSLPLNHLSGRIQDAIAHLTQLTI LELSSNEFGGAIPKDIGQLPKLERLLLHVNNFTGSLPPSLMNCTSLITLNLRVNQLEG DLSAFNFSTLLRLSTLDLGNNNFTGTLPLSLYSCKSLTAVRLASNQLEGQISPAILAL QSLSFLSISTNNLTNFTGAIRILKGCKNLTTLILSKNFMNEAIPNDGNIVGEEGFQNL QILGLGGCNFTGQVPSWLANLKNLEVLDLSQNRITGLIPSWFGSLRNLFYIDLSDNLI SGEFPKELTSLWALATQESNDEVDRSYLELPVFVLPYNATSQQLYNQLSSLPPAIYLR NNNLSGSIPEAIGQLKFLHVLDLGQNDFSGSIPDQISNLTNLEKLDLSGNRLSGQIPA SLRGLHFLSSFSVAYNDLQGPIPSGGQFDTFTSSSFEGNPGLCGSIVQRSCPNAAGIA HSTTTPKSLNAKLIIGLVLGICFGTGLVITLLALWILSKRRIIPGGDTDKIELDTFSS NSFSGVPPQTDKDASLVMLFPNKTNEVKDLTIFELLKATDNFNQENIIGCGGFGLVYK AILADGTKLAVKKLSGDFGLMEREFKAEVEALSTAQHENLVSLQGYCVHEGFRLLIYS YMENGSLDYWLHEKADGPSQLDWPTRLKIARGASNGLAYMHQICEPHIVHRDIKSSNI LLDDKFEAHVADFGLSRLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGV VMLELLTGKRPVDMSRPKTSRELVAWVQKMRSEGKQDEVFDPLLKGKGSYEEMLQVLD VACVCINQNPFKRPTIKEVVDWLKNVGTTISNQNKD" gene complement(5205837..5208212) /locus_tag="TCM_027586" /note="dbxref CacaoGD:Thecc1EG027586" mRNA complement(join(5205837..5206180,5207914..5208212)) /locus_tag="TCM_027586" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1626t1" CDS complement(join(5206098..5206180,5207914..5208004)) /locus_tag="TCM_027586" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26170.1" /translation="MLHQNPAVQLFHSRQVYGRHNQPVQHCLVKGICLSVDCDEDIFE IEKIENRQKCSSL" gene 5211583..5218133 /locus_tag="TCM_027587" /note="dbxref CacaoGD:Thecc1EG027587" mRNA join(5211583..5211858,5212071..5212534,5213476..5213535, 5213611..5213789,5214249..5214384,5215107..5215203, 5215714..5215773,5215862..5215962,5216107..5216141, 5216253..5216310,5216488..5216562,5216631..5216788, 5216880..5217146,5217366..5218133) /locus_tag="TCM_027587" /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16120.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16120.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01776t00001" CDS join(5212388..5212534,5213476..5213535,5213611..5213789, 5214249..5214384,5215107..5215203,5215714..5215773, 5215862..5215962,5216107..5216141,5216253..5216310, 5216488..5216562,5216631..5216788,5216880..5217146, 5217366..5217612) /locus_tag="TCM_027587" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1" /protein_id="EOY26171.1" /db_xref="Phytozome:POPTR_0001s16120.1" /db_xref="TAIR:AT1G53710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MQN4" /translation="MKEHEKLTLVLCLTWTATILYGEMFSFFMPSRFSCSWPHLSSSS ASNSSMNGRGYAIDYVKVAVLADPQIMDKTSLRLPPKSLALEIVQFYTDLYMRRAFFS SILPLKPDVILFLGDYFDGGPYLSDKEWQESLSRLKHMFGLSTEEIYSSIKVYHLPGN HDIGYSSLQSHKPEVVGRYEKEFGSRNYRFVVGKVEFIAVDAQTLDANRQGSVASASW DFVSNVSSDHQLYPRVLLTHIPLYRPDWTDCGPHRSSPIINQRLLHSIPDQEIRYQNY VSEESSNQLLNLIKPVLVLSGHDHDQCTVAHESKSGSVKEHTLGTISWQQGNLYPSFM LLSASNSSLPGASWPEKAVLTHLCFLPMQTHIYIWYLIQFVLTILALLLWPTSGLSFC HYFGDLMECIRKSISLSIFRDGTKEKNEDENCEYEMVWGADGSMHLVKKLLAKPVAHS SDRGSVERGNAVIRPTAKKNVNQETEVCLSVETNANAELDPKKIPPRASKSKAKIIIQ RLVRTFRMLTLIAAVNIPLYMMLLFKDWIDK" mRNA join(5213764..5214384,5215107..5215203,5215714..5215773, 5215862..5215962,5216107..5216141,5216253..5216310, 5216488..5216562,5216631..5216788,5216880..5217146, 5217366..5217992) /locus_tag="TCM_027587" /product="Calcineurin-like metallo-phosphoesterase superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16120.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16120.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc246t6; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc246t10; inference alignment:Newbler:10:TSA:cgbaP2_g01776t00001" mRNA join(<5213764..5213789,5215107..5215203,5215714..5215773, 5215862..5215962,5216107..5216141,5216253..5216310, 5216488..5216562,5216631..5216788,5216880..5217146, 5217366..5217991) /locus_tag="TCM_027587" /product="Calcineurin-like metallo-phosphoesterase superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16120.1" /inference="similar to AA sequence:Phytozome:GSVIVT01026409001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc246t13; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc246t10; inference alignment:Newbler:10:TSA:cgbaP2_g01776t00001" CDS join(<5213766..5213789,5215107..5215203,5215714..5215773, 5215862..5215962,5216107..5216141,5216253..5216310, 5216488..5216562,5216631..5216788,5216880..5217146, 5217366..5217612) /locus_tag="TCM_027587" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Calcineurin-like metallo-phosphoesterase superfamily protein, putative isoform 3" /protein_id="EOY26173.1" /db_xref="Phytozome:GSVIVT01026409001" /db_xref="TAIR:AT1G53710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MQN4" /translation="GTLFIRQRVVGRYEKEFGSRNYRFVVGKVEFIAVDAQTLDANRQ GSVASASWDFVSNVSSDHQLYPRVLLTHIPLYRPDWTDCGPHRSSPIINQRLLHSIPD QEIRYQNYVSEESSNQLLNLIKPVLVLSGHDHDQCTVAHESKSGSVKEHTLGTISWQQ GNLYPSFMLLSASNSSLPGASWPEKAVLTHLCFLPMQTHIYIWYLIQFVLTILALLLW PTSGLSFCHYFGDLMECIRKSISLSIFRDGTKEKNEDENCEYEMVWGADGSMHLVKKL LAKPVAHSSDRGSVERGNAVIRPTAKKNVNQETEVCLSVETNANAELDPKKIPPRASK SKAKIIIQRLVRTFRMLTLIAAVNIPLYMMLLFKDWIDK" CDS join(5214280..5214384,5215107..5215203,5215714..5215773, 5215862..5215962,5216107..5216141,5216253..5216310, 5216488..5216562,5216631..5216788,5216880..5217146, 5217366..5217612) /locus_tag="TCM_027587" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Calcineurin-like metallo-phosphoesterase superfamily protein, putative isoform 2" /protein_id="EOY26172.1" /db_xref="Phytozome:POPTR_0001s16120.1" /db_xref="TAIR:AT1G53710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MQN4" /translation="MFGLSTEEIYSSIKVYHLPGNHDIGYSSLQSHKPEVVGRYEKEF GSRNYRFVVGKVEFIAVDAQTLDANRQGSVASASWDFVSNVSSDHQLYPRVLLTHIPL YRPDWTDCGPHRSSPIINQRLLHSIPDQEIRYQNYVSEESSNQLLNLIKPVLVLSGHD HDQCTVAHESKSGSVKEHTLGTISWQQGNLYPSFMLLSASNSSLPGASWPEKAVLTHL CFLPMQTHIYIWYLIQFVLTILALLLWPTSGLSFCHYFGDLMECIRKSISLSIFRDGT KEKNEDENCEYEMVWGADGSMHLVKKLLAKPVAHSSDRGSVERGNAVIRPTAKKNVNQ ETEVCLSVETNANAELDPKKIPPRASKSKAKIIIQRLVRTFRMLTLIAAVNIPLYMML LFKDWIDK" gene 5219275..5229569 /locus_tag="TCM_027588" /note="dbxref CacaoGD:Thecc1EG027588" mRNA join(5219275..5220012,5220958..5221081,5221197..5221299, 5222132..5222255,5222895..5222960,5223356..5223394, 5223892..5223972,5224051..5224098,5225336..5225386, 5225502..5225570,5226199..5226441,5226610..5227096) /locus_tag="TCM_027588" /product="Enhancer of polycomb-like transcription factor protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000280001" /inference="similar to AA sequence:Phytozome:GSVIVT01000280001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1034t2; inference alignment:Newbler:10:TSA:cgbaP2_g05124t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc948t7_C2" mRNA join(5219275..5220000,5220952..5221081,5221197..5221299, 5222132..5222255,5222895..5222960,5223356..5223394, 5223892..5223972,5224051..5224098,5225336..5225386, 5225502..5225570,5226199..5226441,5226610..5227096) /locus_tag="TCM_027588" /product="Enhancer of polycomb-like transcription factor protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000280001" /inference="similar to AA sequence:Phytozome:GSVIVT01000280001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1034t1; inference alignment:Newbler:10:TSA:cgbaP2_g05124t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc948t7_C2" mRNA join(5219385..5220012,5220952..5221081,5221197..5221299, 5222132..5222255,5222895..5222960,5223356..5223394, 5223892..5223972,5224051..5224098,5225336..5225386, 5225502..5225570,5226199..5226441,5226610..5226976, 5229470..5229569) /locus_tag="TCM_027588" /product="Enhancer of polycomb-like transcription factor protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000280001" /inference="similar to AA sequence:Phytozome:GSVIVT01000280001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05124t00001" CDS join(5219857..5220012,5220952..5221081,5221197..5221299, 5222132..5222255,5222895..5222960,5223356..5223394, 5223892..5223972,5224051..5224098,5225336..5225386, 5225502..5225570,5226199..5226441,5226610..5226864) /locus_tag="TCM_027588" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Enhancer of polycomb-like transcription factor protein isoform 1" /protein_id="EOY26174.1" /db_xref="Phytozome:GSVIVT01000280001" /db_xref="TAIR:AT1G79020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FX82" /translation="MSRLSFRPRPLDIHKKLPIVKSVKDFEDDETPTSATRNSQMLRL AAAEVDNEVQQTPTKKHAPEIPTPQFVVVDTYERDYSRTFFQPTSYLRARGARAEIGE FVEYDLDNEDEDWLQGYNKDKKILAPEKLESLLFKLEVLDHKARERAGVITPTLVSPI PVLLTMDAAIEALQSQSIKYGVFQSVYNYWKEKRERWQKPILRRLQPPPPVNDNNPYN VFRPREKAHRLHTRRMQRRENNVQSFEKLRQVRRNLDQAKTLLEALIKREEKKRDVME SEVSLQRIQMKYKYETELLEDITLPGFAPISSKFGSSEDEFMDSDDLANSRPRTRPAA VQNPPLVDSNVAMVPAGNLKQEFRRRHMLHGWLHKLDPLEPVLLFTKPLVPDKLAAAG IVPPSDTSTTKNGASAPPYKFHGRIGRGGRIVFDRWNPLMHTPIDCGNSYYIPPKPRP STYN" CDS join(5219857..5220012,5220958..5221081,5221197..5221299, 5222132..5222255,5222895..5222960,5223356..5223394, 5223892..5223972,5224051..5224098,5225336..5225386, 5225502..5225570,5226199..5226441,5226610..5226864) /locus_tag="TCM_027588" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Enhancer of polycomb-like transcription factor protein isoform 2" /protein_id="EOY26175.1" /db_xref="Phytozome:GSVIVT01000280001" /db_xref="TAIR:AT1G79020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FX82" /translation="MSRLSFRPRPLDIHKKLPIVKSVKDFEDDETPTSATRNSQMLRL AAAEVDNEQTPTKKHAPEIPTPQFVVVDTYERDYSRTFFQPTSYLRARGARAEIGEFV EYDLDNEDEDWLQGYNKDKKILAPEKLESLLFKLEVLDHKARERAGVITPTLVSPIPV LLTMDAAIEALQSQSIKYGVFQSVYNYWKEKRERWQKPILRRLQPPPPVNDNNPYNVF RPREKAHRLHTRRMQRRENNVQSFEKLRQVRRNLDQAKTLLEALIKREEKKRDVMESE VSLQRIQMKYKYETELLEDITLPGFAPISSKFGSSEDEFMDSDDLANSRPRTRPAAVQ NPPLVDSNVAMVPAGNLKQEFRRRHMLHGWLHKLDPLEPVLLFTKPLVPDKLAAAGIV PPSDTSTTKNGASAPPYKFHGRIGRGGRIVFDRWNPLMHTPIDCGNSYYIPPKPRPST YN" CDS join(5219857..5220000,5220952..5221081,5221197..5221299, 5222132..5222255,5222895..5222960,5223356..5223394, 5223892..5223972,5224051..5224098,5225336..5225386, 5225502..5225570,5226199..5226441,5226610..5226864) /locus_tag="TCM_027588" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Enhancer of polycomb-like transcription factor protein isoform 3" /protein_id="EOY26176.1" /db_xref="Phytozome:GSVIVT01000280001" /db_xref="TAIR:AT1G79020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FX82" /translation="MSRLSFRPRPLDIHKKLPIVKSVKDFEDDETPTSATRNSQMLRL AAAEVQQTPTKKHAPEIPTPQFVVVDTYERDYSRTFFQPTSYLRARGARAEIGEFVEY DLDNEDEDWLQGYNKDKKILAPEKLESLLFKLEVLDHKARERAGVITPTLVSPIPVLL TMDAAIEALQSQSIKYGVFQSVYNYWKEKRERWQKPILRRLQPPPPVNDNNPYNVFRP REKAHRLHTRRMQRRENNVQSFEKLRQVRRNLDQAKTLLEALIKREEKKRDVMESEVS LQRIQMKYKYETELLEDITLPGFAPISSKFGSSEDEFMDSDDLANSRPRTRPAAVQNP PLVDSNVAMVPAGNLKQEFRRRHMLHGWLHKLDPLEPVLLFTKPLVPDKLAAAGIVPP SDTSTTKNGASAPPYKFHGRIGRGGRIVFDRWNPLMHTPIDCGNSYYIPPKPRPSTYN " mobile_element 5228802..5231585 /note="source:CACAO_on_E732_scaffold_9 481 3252" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 5232093..5232530 /note="source:INTACT135F_F90_scaffold_2-int 13526 13943" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5233069..5236174 /note="source:CACAO_on_E732_scaffold_9 122 3252" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 5236675..5237354 /note="source:INTACT135F_F90_scaffold_2-int 13377 14001" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5241914..5241989 /note="source:INTACT49_F22_scaffold_9-int 10518 10592" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5243809..5244015 /note="source:INTACT688_F14_scaffold_11-int 4837 5048" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5244060..5244318 /note="source:INTACT135F_F90_scaffold_2-int 13559 13858" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5246119..5247818) /note="source:CACAO_M_S_E100409_F33_scaffold_9 1205 2939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5254861..5256825) /note="source:CACAO_M_E57059_F42_scaffold_8 1234 3198" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5256926..5257338) /note="source:CACAO_M_E55561_F42_scaffold_8 784 1198" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5262733..5263346 /note="source:CACAO_M_S_E2040_F42_scaffold_1 2504 3117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5263347..5264573) /note="source:CACAO_M_S_E100409_F33_scaffold_9 1 1209" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5265564..5268197) /note="source:INTACT289_F14_scaffold_4-int 7510 10147" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5268198..5268722 /note="source:CACAO_M_E44599_F33_scaffold_6 1 525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5274368..5276475 /note="source:CACAO_M_E44599_F33_scaffold_6 4408 6515" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5278157..5279224 /note="source:CACAO_M_E44599_F33_scaffold_6 6516 7583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5279225..5286738) /note="source:INTACT289_F14_scaffold_4-int 9 7514" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5286692..5286745) /note="source:CACAO_M_E42514_F40_scaffold_5 14447 14501" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5288654..5288783 /note="source:INTACT405F_F91_scaffold_4-int 4259 4391" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5288671..5288686) /note="source:CACAO_M_E42641_F14_scaffold_5 10430 10445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5288687..5291401 /note="source:CACAO_M_E44601_F73_scaffold_6 1 2715" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5296260..5308073 /locus_tag="TCM_027598" /note="dbxref CacaoGD:Thecc1EG027598" mRNA join(5296260..5296671,5296970..5297393,5298324..5298438, 5298683..5298977,5299061..5299561,5299685..5301495, 5301673..5301969,5302065..5302343,5302950..5303078, 5303180..5303380,5303514..5303656,5303761..5304073, 5304259..5304398,5305585..5305663,5305785..5306177, 5306693..5306910,5307025..5308073) /locus_tag="TCM_027598" /product="Histone acetyltransferase of the CBP family 12 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006595" /inference="similar to AA sequence:ricco:30169.m006595" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc277t9" mRNA join(5296398..5296671,5296970..5297393,5298324..5298438, 5298683..5298977,5299061..5299561,5299685..5301495, 5301673..5301969,5302065..5302343,5302950..5303078, 5303180..5303380,5303514..5303656,5303761..5304073, 5304259..5304398,5305585..5305663,5305785..5306177, 5306693..5307852) /locus_tag="TCM_027598" /product="Histone acetyltransferase of the CBP family 12 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031074001" /inference="alignment:exonerate- protein:2:ricco:30169.m006595" /inference="similar to AA sequence:ricco:30169.m006595" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc277t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc277t9; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc233t28" CDS join(5297167..5297393,5298324..5298438,5298683..5298977, 5299061..5299561,5299685..5301495,5301673..5301969, 5302065..5302343,5302950..5303078,5303180..5303380, 5303514..5303656,5303761..5304073,5304259..5304398, 5305585..5305663,5305785..5306177,5306693..5306910, 5307025..5307139) /locus_tag="TCM_027598" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006595" /codon_start=1 /product="Histone acetyltransferase of the CBP family 12 isoform 1" /protein_id="EOY26177.1" /db_xref="TAIR:AT1G16710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B4P5" /translation="MNVQAHMSGQISGQVPNQGGLPQQNGNPLQPAQMQNLGVAGGMG GGGVVGGGGPPHNTLSMDPDLIRTREFMRGKIIEVLKLRHQHPITEASMIKFLDFAKR LEEGLFKFAQTKEEYTNLSTLEHRLQNIIKESRSVHNQRHPQLVNSASAPVGTMIPTP GMSHSGNPSIMVTSSIDTSMSAANASIAPTTVNTGSLLPTGGMNSSSFNRSEGNISNG YQQSPANFPIASGGMSSIGGPRMTSQMIPTPGFNGNSNNSSISNQSYMNNQSSNNVGG LSTVESTMVSQPQQQKQHVGGQNSRILHTLGSQMGSGIRSGLQQKTFGFSNGSLNGAL GMMGNNMQIVNEPGTSGGYQTATPFANTSKPLQQHFDQHQRPLMQGDGYGMSNADSFG SGNLYGTVTSVGSVTNSQNLNPVNLQSMSRTNSSLMSNQSNLHGVQSVAHMRPPQSMD QFDKMNFQPSVSSRDNILQSNQQQQFQQQPNQFQQQQFVQQQRHQKQQNQHHQSLLNN SGYSQSQLASDKGSQVKREPGVENHEEVLHQQGPEQFQLPELQNQFQQNHAEDLSTQQ DICSSLPQNSQQMQQMLQQHQLVPESHNDYKLSAGAQPESLVQSQWHPHSQDRAQMPG NMSHEQHVQEDFRQRISGQDEAQRNNFSADGSTISPVVVPRSSSDPSNSRGAVSRSGN GSHDRQFRNQVRWLLFLRHARRCKAPEGKCDGYCFTVRKLLSHMDICESAQCSYPRCH HSKILIRHHKTCANPACPVCVPVNNYVQAQKARACLNSTSVLPSSDGGSTKTYDAGDI SARVTSTTASIDTSVDIQPSLKRMKIEQSSHQSVIAESEVPVVSGSAVVEPQGSQDIQ RQDYQQSDRCMPVKSEPMEVKTEVPMSSAKGSPTIIEMKDAVDDNCKQKTDGEPITSD DFGGPPKQEKVKIEKESDPAKQENATQSSEIAAGTKSGKPKIKGVSLTELFTPEQVRQ HITGLRQWVGQSKAKVEKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCSPCGARIKRN AMYYTMGAGDTRHYFCIPCHNEARGDSIVVDGNTIQKARLEKKKNDEETEEWWVQCDK CEAWQHQICALFNGRRNDGGQAEYTCPNCYIAEIERGERKPLPQSAVLGAKDLPRTIL SDHIEQRLFRRLKQERLERARAQGKSYDEVPGAEALVIRVVSSVDKKLEVKQRFLEIF QEENYPPEFPYKSKVILLFQKIEGVEVCLFGMYVQEFGSESAFPNQRRVYLSYLDSVK YFRPEVKAVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPE IQKTPKSDKLREWYLAMLRKAAKENIVVDLTNLYDHFFVTTGECKAKVTAARLPYFDG DYWPGAAEDLINQLRQEEDGRKLNKKGTTKKTITKRALKASGQSDLSANASKDVLLMH KLGETICPMKEDFIMVHLQHCCTHCCILMVSGNRWACNQCKNFQLCDKCYETEQKREE RERHPINQREKHVLCPAEINDVPTDTKDKDEILESEFFDTRQAFLSLCQGNHYQYDTL RRAKHSSMMVLYHLHNPTAPAFVTTCNICHLDIETGQGWRCEVCPDYDVCNACYQKDG GIDHPHKLTNHPSMAERDAQNKEARQLRVLQLRKMLDLLVHASQCRSAHCQYPNCRKV KGLFRHGIQCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQ SDSRRRAAVMEMMRQRAAEVAGNSG" CDS join(5297167..5297393,5298324..5298438,5298683..5298977, 5299061..5299561,5299685..5301495,5301673..5301969, 5302065..5302343,5302950..5303078,5303180..5303380, 5303514..5303656,5303761..5304073,5304259..5304398, 5305585..5305663,5305785..5306177,5306693..5306986) /locus_tag="TCM_027598" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006595" /codon_start=1 /product="Histone acetyltransferase of the CBP family 12 isoform 2" /protein_id="EOY26178.1" /db_xref="TAIR:AT1G16710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B4P5" /translation="MNVQAHMSGQISGQVPNQGGLPQQNGNPLQPAQMQNLGVAGGMG GGGVVGGGGPPHNTLSMDPDLIRTREFMRGKIIEVLKLRHQHPITEASMIKFLDFAKR LEEGLFKFAQTKEEYTNLSTLEHRLQNIIKESRSVHNQRHPQLVNSASAPVGTMIPTP GMSHSGNPSIMVTSSIDTSMSAANASIAPTTVNTGSLLPTGGMNSSSFNRSEGNISNG YQQSPANFPIASGGMSSIGGPRMTSQMIPTPGFNGNSNNSSISNQSYMNNQSSNNVGG LSTVESTMVSQPQQQKQHVGGQNSRILHTLGSQMGSGIRSGLQQKTFGFSNGSLNGAL GMMGNNMQIVNEPGTSGGYQTATPFANTSKPLQQHFDQHQRPLMQGDGYGMSNADSFG SGNLYGTVTSVGSVTNSQNLNPVNLQSMSRTNSSLMSNQSNLHGVQSVAHMRPPQSMD QFDKMNFQPSVSSRDNILQSNQQQQFQQQPNQFQQQQFVQQQRHQKQQNQHHQSLLNN SGYSQSQLASDKGSQVKREPGVENHEEVLHQQGPEQFQLPELQNQFQQNHAEDLSTQQ DICSSLPQNSQQMQQMLQQHQLVPESHNDYKLSAGAQPESLVQSQWHPHSQDRAQMPG NMSHEQHVQEDFRQRISGQDEAQRNNFSADGSTISPVVVPRSSSDPSNSRGAVSRSGN GSHDRQFRNQVRWLLFLRHARRCKAPEGKCDGYCFTVRKLLSHMDICESAQCSYPRCH HSKILIRHHKTCANPACPVCVPVNNYVQAQKARACLNSTSVLPSSDGGSTKTYDAGDI SARVTSTTASIDTSVDIQPSLKRMKIEQSSHQSVIAESEVPVVSGSAVVEPQGSQDIQ RQDYQQSDRCMPVKSEPMEVKTEVPMSSAKGSPTIIEMKDAVDDNCKQKTDGEPITSD DFGGPPKQEKVKIEKESDPAKQENATQSSEIAAGTKSGKPKIKGVSLTELFTPEQVRQ HITGLRQWVGQSKAKVEKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCSPCGARIKRN AMYYTMGAGDTRHYFCIPCHNEARGDSIVVDGNTIQKARLEKKKNDEETEEWWVQCDK CEAWQHQICALFNGRRNDGGQAEYTCPNCYIAEIERGERKPLPQSAVLGAKDLPRTIL SDHIEQRLFRRLKQERLERARAQGKSYDEVPGAEALVIRVVSSVDKKLEVKQRFLEIF QEENYPPEFPYKSKVILLFQKIEGVEVCLFGMYVQEFGSESAFPNQRRVYLSYLDSVK YFRPEVKAVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPE IQKTPKSDKLREWYLAMLRKAAKENIVVDLTNLYDHFFVTTGECKAKVTAARLPYFDG DYWPGAAEDLINQLRQEEDGRKLNKKGTTKKTITKRALKASGQSDLSANASKDVLLMH KLGETICPMKEDFIMVHLQHCCTHCCILMVSGNRWACNQCKNFQLCDKCYETEQKREE RERHPINQREKHVLCPAEINDVPTDTKDKDEILESEFFDTRQAFLSLCQGNHYQYDTL RRAKHSSMMVLYHLHNPTAPAFVTTCNICHLDIETGQGWRCEVCPDYDVCNACYQKDG GIDHPHKLTNHPSMAERDAQNKEARQLRVLQLRKMLDLLVHASQCRSAHCQYPNCRKV KGLFRHGIQCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRYMHVALKPLNSH MLCSFLCLCSWV" gene 5307574..5314963 /locus_tag="TCM_027599" /note="dbxref CacaoGD:Thecc1EG027599" mRNA join(5307574..5307603,5307928..5308848,5309142..5309354, 5309708..5309912,5310040..5310115,5310247..5310382, 5310520..5310624,5312084..5312164,5313453..5313542, 5313629..5313694,5313925..5314018,5314100..5314177, 5314253..5314300,5314414..5314453) /locus_tag="TCM_027599" /product="High chlorophyll fluorescence phenotype 173 protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029443001" /inference="similar to AA sequence:Phytozome:POPTR_0007s15080.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc526t10; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc534t15" mRNA join(5308122..5308848,5309142..5309354,5309708..5309912, 5310040..5310115,5310247..5310382,5310520..5310624, 5312084..5312164,5313453..5313542,5313629..5313694, 5313962..5314018,5314100..5314177,5314253..5314300, 5314414..5314952) /locus_tag="TCM_027599" /product="High chlorophyll fluorescence phenotype 173 protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029443001" /inference="similar to AA sequence:Phytozome:POPTR_0007s15080.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc534t15" mRNA join(5308173..5308848,5309142..5309354,5309708..5309912, 5310040..5310115,5310247..5310382,5310520..5310624, 5312084..5312164,5313453..5313542,5313629..5313694, 5313925..5314018,5314100..5314177,5314253..5314300, 5314414..5314963) /locus_tag="TCM_027599" /product="High chlorophyll fluorescence phenotype 173 protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029443001" /inference="similar to AA sequence:Phytozome:POPTR_0007s15080.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1695t3; alternateUTRof:Thecc1EG027599t2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc534t15" mRNA join(5308173..5308848,5309142..5309354,5309708..5309912, 5310040..5310115,5310247..5310382,5310520..5310624, 5312084..5312164,5313453..5313542,5313629..5313694, 5313960..5314018,5314100..5314300,5314414..5314963) /locus_tag="TCM_027599" /product="High chlorophyll fluorescence phenotype 173 protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029443001" /inference="similar to AA sequence:Phytozome:POPTR_0007s15080.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1695t5; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc534t15" CDS join(5308285..5308848,5309142..5309354,5309708..5309912, 5310040..5310115,5310247..5310382,5310520..5310624, 5312084..5312164,5313453..5313542,5313629..5313694, 5313962..5314018,5314100..5314177,5314253..5314300, 5314414..5314485) /locus_tag="TCM_027599" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="High chlorophyll fluorescence phenotype 173 protein isoform 1" /protein_id="EOY26179.1" /db_xref="Phytozome:POPTR_0007s15080.1" /db_xref="TAIR:AT1G16720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W4D6" /translation="MSAATATTAMSASTGLGHGFNSSPIWLKWQPSPCQRSTFLILRA ASSPNTGKGNKKKPKAKKTSPTPTPITTTTTTTTSTESISQDQPQQQQQQVSLSLDDV NPVGLGRKSRQIFDEVWRKFSGLGQISRTTRVDDREALDALLIREGPMCEFAIPGAQN TTVLVVGATSRIGRIVVRKLMLRGYTVKALVRKADQAVLDMLPRSVEIVIGDVGEPST LQAAVEGCNKIIYCATARSTITGDLYRVDHQGVLNLTKALQDYNNKLAQIRAGKSSKS KLLLAKFKSEDSLNGWEIRQGTYFQDVIASKYDGGMDAKFEYTETGQAVFSGYVFTRG GYVELSKKFSLPLGCTLDRNEGLVLSLGGNGRSYVVILEAGPSADTTQSKLYFARINT KVGFCRVRVPFSSFRPVKLDDPPLDPFLVHTLTIRFEPRRQRPVEGPAGMKQDPRSFK LILEYIKALPTGQETDFVLVSCTGLGVEPNRREQVLKAKRAGEDSLRRSGLGYTIIRP GPLKEEPGGQRALIFDQGNRISQGISCVDVADICVKALHDPTARNKSFDVCHEYVAEE GRELYELVAHLPDKANNYLTPALSVLEKNT" CDS join(5308285..5308848,5309142..5309354,5309708..5309912, 5310040..5310115,5310247..5310382,5310520..5310624, 5312084..5312164,5313453..5313542,5313629..5313694, 5313960..5314018,5314100..5314136) /locus_tag="TCM_027599" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="High chlorophyll fluorescence phenotype 173 protein isoform 4" /protein_id="EOY26182.1" /db_xref="Phytozome:POPTR_0007s15080.1" /db_xref="TAIR:AT1G16720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W4D6" /translation="MSAATATTAMSASTGLGHGFNSSPIWLKWQPSPCQRSTFLILRA ASSPNTGKGNKKKPKAKKTSPTPTPITTTTTTTTSTESISQDQPQQQQQQVSLSLDDV NPVGLGRKSRQIFDEVWRKFSGLGQISRTTRVDDREALDALLIREGPMCEFAIPGAQN TTVLVVGATSRIGRIVVRKLMLRGYTVKALVRKADQAVLDMLPRSVEIVIGDVGEPST LQAAVEGCNKIIYCATARSTITGDLYRVDHQGVLNLTKALQDYNNKLAQIRAGKSSKS KLLLAKFKSEDSLNGWEIRQGTYFQDVIASKYDGGMDAKFEYTETGQAVFSGYVFTRG GYVELSKKFSLPLGCTLDRNEGLVLSLGGNGRSYVVILEAGPSADTTQSKLYFARINT KVGFCRVRVPFSSFRPVKLDDPPLDPFLVHTLTIRFEPRRQRPVEGPAGMKQDPRSFK LILEYIKALPTGQETDFVLVSCTGLGVEPNRREQVLKAKRAGEDSLRRSGLGYTIIRP GPLKRRNLVANVLLYLIKETGFLRALVVLMWLISA" CDS join(5308285..5308848,5309142..5309354,5309708..5309912, 5310040..5310115,5310247..5310382,5310520..5310624, 5312084..5312164,5313453..5313542,5313629..5313694, 5313925..5313996) /locus_tag="TCM_027599" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="High chlorophyll fluorescence phenotype 173 protein isoform 2" /protein_id="EOY26180.1" /db_xref="Phytozome:POPTR_0007s15080.1" /db_xref="TAIR:AT1G16720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W4D6" /translation="MSAATATTAMSASTGLGHGFNSSPIWLKWQPSPCQRSTFLILRA ASSPNTGKGNKKKPKAKKTSPTPTPITTTTTTTTSTESISQDQPQQQQQQVSLSLDDV NPVGLGRKSRQIFDEVWRKFSGLGQISRTTRVDDREALDALLIREGPMCEFAIPGAQN TTVLVVGATSRIGRIVVRKLMLRGYTVKALVRKADQAVLDMLPRSVEIVIGDVGEPST LQAAVEGCNKIIYCATARSTITGDLYRVDHQGVLNLTKALQDYNNKLAQIRAGKSSKS KLLLAKFKSEDSLNGWEIRQGTYFQDVIASKYDGGMDAKFEYTETGQAVFSGYVFTRG GYVELSKKFSLPLGCTLDRNEGLVLSLGGNGRSYVVILEAGPSADTTQSKLYFARINT KVGFCRVRVPFSSFRPVKLDDPPLDPFLVHTLTIRFEPRRQRPVEGPAGMKQDPRSFK LILEYIKALPTGQETDFVLVSCTGLGVEPNRREQVLKAKRAGEDSLRRSGLGYTIIRP GPLKPKYVLNQSLVLTGGTWWPTCSYI" CDS join(5308285..5308848,5309142..5309354,5309708..5309912, 5310040..5310115,5310247..5310382,5310520..5310624, 5312084..5312164,5313453..5313542,5313629..5313694, 5313925..5313996) /locus_tag="TCM_027599" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="High chlorophyll fluorescence phenotype 173 protein isoform 2" /protein_id="EOY26181.1" /db_xref="Phytozome:POPTR_0007s15080.1" /db_xref="TAIR:AT1G16720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W4D6" /translation="MSAATATTAMSASTGLGHGFNSSPIWLKWQPSPCQRSTFLILRA ASSPNTGKGNKKKPKAKKTSPTPTPITTTTTTTTSTESISQDQPQQQQQQVSLSLDDV NPVGLGRKSRQIFDEVWRKFSGLGQISRTTRVDDREALDALLIREGPMCEFAIPGAQN TTVLVVGATSRIGRIVVRKLMLRGYTVKALVRKADQAVLDMLPRSVEIVIGDVGEPST LQAAVEGCNKIIYCATARSTITGDLYRVDHQGVLNLTKALQDYNNKLAQIRAGKSSKS KLLLAKFKSEDSLNGWEIRQGTYFQDVIASKYDGGMDAKFEYTETGQAVFSGYVFTRG GYVELSKKFSLPLGCTLDRNEGLVLSLGGNGRSYVVILEAGPSADTTQSKLYFARINT KVGFCRVRVPFSSFRPVKLDDPPLDPFLVHTLTIRFEPRRQRPVEGPAGMKQDPRSFK LILEYIKALPTGQETDFVLVSCTGLGVEPNRREQVLKAKRAGEDSLRRSGLGYTIIRP GPLKPKYVLNQSLVLTGGTWWPTCSYI" gene 5311177..5312164 /locus_tag="TCM_027600" /note="dbxref CacaoGD:Thecc1EG027600" mRNA 5311177..5312164 /locus_tag="TCM_027600" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2212t1" CDS 5311418..5311717 /locus_tag="TCM_027600" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26183.1" /translation="MTYFELLVVVFSSIIHLNDDFCFHITIIDGLLIFRLDISRLACQ NFGHKHTQEVALENRIMHFRVACRKFSFCCQWQLHFLVHDLINILILAFVMKILL" gene 5314646..5316766 /locus_tag="TCM_027601" /note="dbxref CacaoGD:Thecc1EG027601" mRNA join(5314646..5314661,5315147..5315732,5316003..5316047, 5316517..5316766) /locus_tag="TCM_027601" /product="Mitochondrial import inner membrane translocase subunit tim-10 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029444001" /inference="similar to AA sequence:Phytozome:GSVIVT01029444001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1707t1" mRNA join(5315289..5315732,5316003..5316047,5316296..5316515) /locus_tag="TCM_027601" /product="Mitochondrial import inner membrane translocase subunit tim-10 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029444001" /inference="similar to AA sequence:Phytozome:GSVIVT01029444001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01016t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1707t1" CDS join(5315347..5315732,5316003..5316047,5316517..5316574) /locus_tag="TCM_027601" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Mitochondrial import inner membrane translocase subunit tim-10 isoform 1" /protein_id="EOY26184.1" /db_xref="Phytozome:GSVIVT01029444001" /db_xref="TAIR:AT1G78995.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L5A1" /translation="MLICGPGAAFCVRTSLYCVNSNSRNNIASKSKSYLTRYSRRCHL ASSFLAAAALMVSAAGAAEVPQDSETLSNIPQTLSGECASSKDCKKPRIQRPKSRKAE SCTTKCLATCIRGGVGSPGEGPLNIRRPLVVFKEGFRSRKYCLVECSDICNLIGDEDY GP" CDS join(5315347..5315732,5316003..5316047,5316296..5316320) /locus_tag="TCM_027601" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Mitochondrial import inner membrane translocase subunit tim-10 isoform 2" /protein_id="EOY26185.1" /db_xref="Phytozome:GSVIVT01029444001" /db_xref="TAIR:AT1G78995.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L5A1" /translation="MLICGPGAAFCVRTSLYCVNSNSRNNIASKSKSYLTRYSRRCHL ASSFLAAAALMVSAAGAAEVPQDSETLSNIPQTLSGECASSKDCKKPRIQRPKSRKAE SCTTKCLATCIRGGVGSPGEGPLNIRRPLVVFKEGFRSRKYWSQVDSSL" gene complement(5317356..5318871) /locus_tag="TCM_027602" /note="dbxref CacaoGD:Thecc1EG027602" mRNA complement(join(5317356..5317597,5318450..5318871)) /locus_tag="TCM_027602" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029445001" /inference="similar to AA sequence:Phytozome:GSVIVT01029445001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01866t00002" CDS complement(join(5317433..5317597,5318450..5318704)) /locus_tag="TCM_027602" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26186.1" /db_xref="Phytozome:GSVIVT01029445001" /db_xref="TAIR:AT1G16730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SRS7" /translation="MVMMKGVALAADIRRNLGVIKERVLEKLAAAAVPADALENARHL LESVVRDVTVAAHGLTKDALHRIKTHLVDILPSLSPAVTRKMVDDAEKEANEEQETEG EHEVDERRQDDHQLSGKSPFVSPASSLFALIKPLSRL" gene 5319876..5323620 /locus_tag="TCM_027603" /note="dbxref CacaoGD:Thecc1EG027603" mRNA join(5319876..5320071,5323280..5323620) /locus_tag="TCM_027603" /product="Ribosomal protein L20" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s15150.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s15150.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15726t1" CDS join(5319886..5320071,5323280..5323471) /locus_tag="TCM_027603" /codon_start=1 /product="Ribosomal protein L20" /protein_id="EOY26187.1" /db_xref="Phytozome:POPTR_0005s15150.1" /db_xref="TAIR:AT1G16740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A4SBA5" /translation="MNKKEILKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR DMRSLWIERINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDIS RNAFPGNKNIVLPTRKANVAINV" gene 5324253..5328889 /locus_tag="TCM_027604" /note="dbxref CacaoGD:Thecc1EG027604" mRNA join(5324253..5324650,5325939..5326804,5327681..5328889) /locus_tag="TCM_027604" /product="HXXXD-type acyl-transferase family protein, putative" /inference="alignment:exonerate- protein:2:ricco:28196.m000204" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027608t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s15050.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc778t4" CDS join(5326394..5326804,5327681..5328646) /locus_tag="TCM_027604" /note="paralog of Thecc1EG027608t1" /codon_start=1 /product="HXXXD-type acyl-transferase family protein, putative" /protein_id="EOY26188.1" /db_xref="Phytozome:POPTR_0007s15050.1" /db_xref="TAIR:AT1G78990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64549" /translation="MGSAKGDFMLSVGKKEVVAAALPFQEHWLPLTNLDLLLPALDVG LFFCYKKPTMSFGSMVSVLKKALAQALLSYYAFAGEVVTNALGEPELLCNNRGVDFIE AYADIELENLNLHNPEESIEGKFVPEKKHGVISIQATELKCGGIMVACSFDHRMADAY STNMFLVSWAEIARSKPGSVAPSFRRSLLNPRRPGRFDPSLDEMYVPIPSLPPPEEFH EPTDHLISRIYYVTADKLNELQSLASSDGHKRTKLESFSAFLWKMVATVAAKDGDKIS KMGIVVDGRSRLGEGDQDKATLMGSHFGNVLSIPYGSQTVGELVEKPVSWVAKQVHDF LKPAADEEHFLGLIDWVEAHRPEPAMTRVYCVGKDDGPALVVSSGQRFPVSKVDFGWG SPTFGSYHFPWGGLCGYVMPMPSPAGDGDWVVYMLLLKGQLELIEKEAANVFRPVTFD YLTKVSST" mobile_element complement(5329043..5329656) /note="source:INTACT105_F2_scaffold_2-int 198 795" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5329770..5329979) /note="source:INTACT105_F2_scaffold_2-int 15275 15475" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5330012..5331375 /note="source:INTACT674_F296_scaffold_6-int 4598 5904" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5330297..5331404 /note="source:CACAO_M_S_E16721_F36_scaffold_2 3434 4539" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5332629..5335256 /note="source:CACAO_M_E13220_F12_scaffold_3 9806 12531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5335225..5335411 /note="source:CACAO_M_S_E16721_F36_scaffold_2 5785 5978" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5335491..5341462) /note="source:scaffold_2_CACTA_0248 2593 8443" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5341446..5342398) /note="source:scaffold_2_CACTA_0248 489 1472" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5342144..5344105 /note="source:CACAO_M_S_E16721_F36_scaffold_2 17233 19169" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5345075..5345393 /note="source:INTACT591_F264_scaffold_1-int 1195 1522" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5345335..5345405) /note="source:CACAO_M_S_E89272_F5_scaffold_8 10917 10991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5345428..5346678 /note="source:CACAO_M_E71479_F17_scaffold_10 267 1513" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5346679..5349090 /note="source:INTACT524_F2_scaffold_3-int 4347 6756" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5347277..5349308) /note="source:INTACT755_F2_scaffold_4-int 2068 4118" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5349239..5351175 /note="source:CACAO_M_S_E51565_F2_scaffold_4 11645 13601" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5359741..5368959 /note="source:CACAO_M_E36333_F12_scaffold_5 1 9225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5368958..5369642) /note="source:INTACT212F_F351_scaffold_3-int 1 665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5373326..5374431) /note="source:INTACT135F_F90_scaffold_2-int 12864 13997" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(5377216..5377767) /locus_tag="TCM_027607" /note="dbxref CacaoGD:Thecc1EG027607" mRNA complement(join(5377216..5377493,5377590..5377767)) /locus_tag="TCM_027607" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017824t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(5377282..5377493,5377590..5377689)) /locus_tag="TCM_027607" /note="paralog of Thecc1EG017824t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26189.1" /translation="MDPIGSRKLRLAINLATHFPIEIINANSMQVYQGVLHHLLGIVS SNVKFTIKKFRDMQFLLLKELKSISIFFVVQPIVISKRKKFFKTELPQTSINIDFSIF I" mobile_element 5380754..5381235 /note="source:CACAO_M_E44611_F42_scaffold_6 1 482" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5381813..5383236 /note="source:CACAO_M_E44611_F42_scaffold_6 483 1906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5383550..5383869 /note="source:CACAO_M_E44611_F42_scaffold_6 1907 2226" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5386301..5386363) /note="source:scaffold_4_CACTA_0498 1514 1576" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5390460..5390554) /note="source:INTACT88_F12_scaffold_4-int 12475 12565" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5394287..5394975) /note="source:CACAO_M_E33114_F73_scaffold_4 2038 2728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5396038..5397803 /note="source:CACAO_M_E44150_F74_scaffold_5 2810 4595" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5400006..5403126 /locus_tag="TCM_027608" /note="dbxref CacaoGD:Thecc1EG027608" mRNA join(5400006..5400450,5401335..5403126) /locus_tag="TCM_027608" /product="HXXXD-type acyl-transferase family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29889.m003426" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027604t1" /inference="similar to AA sequence:ricco:29889.m003426" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1716t1" CDS join(5400028..5400450,5401335..5402303) /locus_tag="TCM_027608" /note="dbxref ricco:29889.m003426; paralog of Thecc1EG027604t1" /codon_start=1 /product="HXXXD-type acyl-transferase family protein, putative" /protein_id="EOY26190.1" /db_xref="TAIR:AT1G78990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64549" /translation="MGAERDYTVTVSKKEVVAAVLPLQEHWLPFSNLDLLLPAVDVGV FFCYKKAVGVGDAMSFGSMVSVLKKAMAQALVSYYAFASEVVPNTVGEPELVCNNRGV DFIEAYADVELRNLDLHNPDESIEGKLVPKKKQGVLSVQATELRCGGLVVACTFDHRI ADAYSANMFLVSWAEMARSKSISVVPSFRRSLLNPRRPGRIDPSLDDMYMPISSLPPP KQHHQATDQLISRIYYIAAEQLNELQSLACSNGYKRTKIESFSAFLWKMVALVAAKDD DSEVTKMGIVVDGRGRLGEGDKDRASLMSCYFGNVLSIPYGSQRVNELIERPLSWVAN QVHNFLDQAVTKEHFLGLIDWVEAHRPEPALAKIYSNGSDDGPAFVVSSGQRFPVSKV DFGWGCPVFGSYHFPWGGDAGYVMPMPSPAREGDWVVYMHLFKRQLDLIETEASHVFR PLTFDYLDFSGSN" gene complement(5403135..5412868) /locus_tag="TCM_027609" /note="dbxref CacaoGD:Thecc1EG027609" mRNA complement(join(5403135..5403514,5410846..5411734, 5411837..5411861,5412853..5412868)) /locus_tag="TCM_027609" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027617t2" /inference="similar to AA sequence:frave:gene05515" /note="quality class is medium, express is weak, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.31 coverage" mobile_element complement(5407186..5407227) /note="source:CACAO_M_E85113_F12_scaffold_10 11808 11849" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(5411414..5411734,5411837..5411854)) /locus_tag="TCM_027609" /note="dbxref frave:gene05515; paralog of Thecc1EG027617t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26191.1" /db_xref="TAIR:AT3G13000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56W79" /translation="MYSSPAVRIYTAKNVREELEEAQRDFIRASVGVTSKGKQLVPKL LHCFAKGFVDDSNLAVWISHYLPSHQAAFVEQFISQRRQSLLGSRNCGIIPFDSRFRY LFLPDKISLQ" gene 5413443..5416103 /locus_tag="TCM_027610" /note="dbxref CacaoGD:Thecc1EG027610" mRNA join(5413443..5413884,5415491..5416103) /locus_tag="TCM_027610" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038863t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(5413518..5413884,5415491..5415774) /locus_tag="TCM_027610" /note="paralog of Thecc1EG038863t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26192.1" /translation="MGPLPFTNDIVMVVSDDDASNQIDDDDEKDDIEDWNDEMDDDCE NDYIGGHDDCLEDDRGKDNDISDCNHENGSTKHATTVELEKVQCNDHVPTIVLEDVEC DDPIYDNPIAGENGIHSPNNISANVQPLNFSQTIIRIDLWWRDMRYPFARLCILVSGT SPLIFTKLLFRHQLGKFKRENLGGKGFHQLGKAVNDVDVHSARATVIIDKIVQRRL" mobile_element 5419362..5420860 /note="source:CACAO_M_E45032_F215_scaffold_6 1 1483" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5420567..5426461 /locus_tag="TCM_027611" /note="dbxref CacaoGD:Thecc1EG027611" mRNA join(5420567..5420689,5423264..5423580,5423652..5423766, 5425367..5426461) /locus_tag="TCM_027611" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.30 coverage" mobile_element 5421334..5423087 /note="source:CACAO_M_S_E100682_F3_scaffold_9 1 1755" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(5423486..5423580,5423652..5423766,5425367..5425462) /locus_tag="TCM_027611" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26193.1" /translation="MKADGMTNDKVEDTIRETKSHVTKATFFVRRSSEDVINKFTGDN CAFAHDVNEKLVVMGYWSTRLRIRKLGLFCRTDQPLHRSDNPIPTTMRILLYQGFII" mobile_element 5427128..5428545 /note="source:CACAO_on_SS_E90_scaffold_6 10648 12104" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5429909..5430873 /note="source:INTACT19_F111_scaffold_6-int 676 2890" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5430874..5432370) /note="source:CACAO_M_E49205_F4_scaffold_6 7798 9299" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5432377..5433856 /note="source:INTACT19_F111_scaffold_6-int 4887 6372" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5436962..5437007 /note="source:INTACT19_F111_scaffold_6-int 13165 13211" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5437466..5437641 /note="source:INTACT464_F222_scaffold_9-int 11901 12074" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5437475..5437664 /note="source:CACAO_on_S_E46_scaffold_2 17723 17905" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5438098..5439834 /note="source:INTACT19_F111_scaffold_6-int 15179 16120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5439835..5440283) /note="source:scaffold_8_CACTA_0867 1835 2288" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5441084..5441430) /note="source:CACAO_Mutator_E592_scaffold_3 4468 4823" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5441432..5444213 /note="source:CACAO_M_E44614_F87_scaffold_6 1 2782" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5444214..5444651) /note="source:scaffold_8_CACTA_0867 417 847" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5446949..5447222 /note="source:CACAO_on_E33_A_scaffold_3 11298 11606" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(5447223..5448249) /note="source:CACAO_M_E48415_F73_scaffold_6 1415 2442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5452055..5452501) /note="source:INTACT1818F_F49_scaffold_11-int 7059 7505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5452488..5453646 /note="source:INTACT706_F73_scaffold_9-int 2233 3389" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5453631..5453712 /note="source:CACAO_M_E12297_F14_scaffold_3 13994 14078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5453640..5454046 /note="source:CACAO_M_E42514_F40_scaffold_5 10290 10696" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5455255..5459442 /note="source:INTACT359_F73_scaffold_2-int 3683 6564" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5459741..5460091 /note="source:INTACT706_F73_scaffold_9-int 2329 2679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5460092..5460599 /note="source:CACAO_M_E49548_F86_scaffold_7 1 506" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5460597..5463510 /note="source:CACAO_M_E44619_F86_scaffold_6 1 2914" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5463511..5465914) /note="source:CACAO_M_E50663_F86_scaffold_7 1 2427" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5465915..5465962 /note="source:CACAO_M_E4447_F306_scaffold_2 3031 3068" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5465963..5466000) /note="source:CACAO_M_E49857_F85_scaffold_7 4027 4045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5466657..5468008) /note="source:CACAO_M_S_E17021_F51_scaffold_3 5115 6465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5468004..5468051) /note="source:CACAO_M_S_E65068_F306_scaffold_5 6124 6171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5468040..5471441) /note="source:CACAO_M_S_E65068_F306_scaffold_5 1 3419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5471442..5472359) /note="source:INTACT26_F13_scaffold_9-int 2416 3337" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5471851..5483672) /locus_tag="TCM_027617" /note="dbxref CacaoGD:Thecc1EG027617" mRNA complement(join(5471851..5471874,5473688..5474572, 5474673..5474792,5474890..5474982,5476213..5476272, 5476397..5476496,5476839..5477344,5478779..5478916, 5479482..5479631,5480420..5480533,5480949..5481038, 5481564..5481654,5481799..5481941,5483118..5483672)) /locus_tag="TCM_027617" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s15040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037435t2" /inference="similar to AA sequence:Phytozome:GSVIVT01029452001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1940t3" mRNA complement(join(5471851..5471874,5473688..5474572, 5474673..5474792,5474890..5474982,5476213..5476272, 5476397..5476496,5476839..5477347,5478779..5478916, 5479482..5479631,5480420..5480533,5480949..5481038, 5481564..5481654,5481799..5481941,5482454..5482563)) /locus_tag="TCM_027617" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s15040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037435t2" /inference="similar to AA sequence:Phytozome:GSVIVT01029452001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b026712t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1940t3" mRNA complement(join(5473823..5474572,5474673..5474792, 5474890..5474982,5476213..5476272,5476397..5476496, 5476839..5477344,5478779..5478916,5479482..5479631, 5480420..5480533,5480949..5481038,5481564..5481654, 5481799..5481941,5482454..5482479)) /locus_tag="TCM_027617" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s15040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037435t2" /inference="similar to AA sequence:Phytozome:GSVIVT01029452001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1940t3; alternateUTRof:Thecc1EG027617t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1940t3" CDS complement(join(5474252..5474572,5474673..5474792, 5474890..5474982,5476213..5476272,5476397..5476496, 5476839..5477344,5478779..5478916,5479482..5479631, 5480420..5480533,5480949..5481038,5481564..5481654, 5481799..5481836)) /locus_tag="TCM_027617" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037435t2" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY26194.1" /db_xref="Phytozome:GSVIVT01029452001" /db_xref="TAIR:AT3G13000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56W79" /translation="MCDSSVVQSAVCQNDSISNSSHSKAGSQLDIVGELQSSNSSFEG RKYSEETGSVESCFKSSDSYPYRFQLEQDVHKLQQKLQEEIELHSILKNAIEKNATEL SSPSCLPHHAQEVLSHIAVLEVTISKLEQEMVSLHFQLSQERNERRLAEYRLRHSFSP SISHSSRCLKHSNSELHHSSEDNACQEPTDQPSESTGESSSTESVRENAVDSLLHLDG KKISAKTDGKSCQPLQFEKISRGIPPKGLWDHPNQLSEEMVRCMRNIFIFLADSPIPS KSSAFESHNSTLSPRGHLSNSSWWSSSERSMIPSWVQSPQIDIQSNSEVLASENSFDP YRVRGKLSWAEIGNYSLANEVSCMSVGKKQLEYASGALRRFRILVEQLAKVNPIHLSS NEKLAFWINLYNALIMHAYLAYGVPRSDLKLFSLMQKAAYTVGGHSFSAAVIEYVILR MKPPLHRPQIALLLALHKLKVSDEQRKSAIDAYEPRVSFALSSGMYSSPVVRIYTAKN VREELEEAQRDFIRASVGVSSKGKLLVPKLLHCFAKGFVDDSNLAVWISHYLPSHQAA FVEQCISQTRQSLLGSRNCGILPFDSRFRYLFLPDKISLQ" CDS complement(join(5474252..5474572,5474673..5474792, 5474890..5474982,5476213..5476272,5476397..5476496, 5476839..5477344,5478779..5478916,5479482..5479631, 5480420..5480533,5480949..5481038,5481564..5481654, 5481799..5481836)) /locus_tag="TCM_027617" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG037435t2" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY26196.1" /db_xref="Phytozome:GSVIVT01029452001" /db_xref="TAIR:AT3G13000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56W79" /translation="MCDSSVVQSAVCQNDSISNSSHSKAGSQLDIVGELQSSNSSFEG RKYSEETGSVESCFKSSDSYPYRFQLEQDVHKLQQKLQEEIELHSILKNAIEKNATEL SSPSCLPHHAQEVLSHIAVLEVTISKLEQEMVSLHFQLSQERNERRLAEYRLRHSFSP SISHSSRCLKHSNSELHHSSEDNACQEPTDQPSESTGESSSTESVRENAVDSLLHLDG KKISAKTDGKSCQPLQFEKISRGIPPKGLWDHPNQLSEEMVRCMRNIFIFLADSPIPS KSSAFESHNSTLSPRGHLSNSSWWSSSERSMIPSWVQSPQIDIQSNSEVLASENSFDP YRVRGKLSWAEIGNYSLANEVSCMSVGKKQLEYASGALRRFRILVEQLAKVNPIHLSS NEKLAFWINLYNALIMHAYLAYGVPRSDLKLFSLMQKAAYTVGGHSFSAAVIEYVILR MKPPLHRPQIALLLALHKLKVSDEQRKSAIDAYEPRVSFALSSGMYSSPVVRIYTAKN VREELEEAQRDFIRASVGVSSKGKLLVPKLLHCFAKGFVDDSNLAVWISHYLPSHQAA FVEQCISQTRQSLLGSRNCGILPFDSRFRYLFLPDKISLQ" CDS complement(join(5474252..5474572,5474673..5474792, 5474890..5474982,5476213..5476272,5476397..5476496, 5476839..5477347,5478779..5478916,5479482..5479631, 5480420..5480533,5480949..5481038,5481564..5481654, 5481799..5481836)) /locus_tag="TCM_027617" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037435t2" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY26195.1" /db_xref="Phytozome:GSVIVT01029452001" /db_xref="TAIR:AT3G13000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56W79" /translation="MCDSSVVQSAVCQNDSISNSSHSKAGSQLDIVGELQSSNSSFEG RKYSEETGSVESCFKSSDSYPYRFQLEQDVHKLQQKLQEEIELHSILKNAIEKNATEL SSPSCLPHHAQEVLSHIAVLEVTISKLEQEMVSLHFQLSQERNERRLAEYRLRHSFSP SISHSSRCLKHSNSELHHSSEDNACQEPTDQPSESTGESSSTESVREQNAVDSLLHLD GKKISAKTDGKSCQPLQFEKISRGIPPKGLWDHPNQLSEEMVRCMRNIFIFLADSPIP SKSSAFESHNSTLSPRGHLSNSSWWSSSERSMIPSWVQSPQIDIQSNSEVLASENSFD PYRVRGKLSWAEIGNYSLANEVSCMSVGKKQLEYASGALRRFRILVEQLAKVNPIHLS SNEKLAFWINLYNALIMHAYLAYGVPRSDLKLFSLMQKAAYTVGGHSFSAAVIEYVIL RMKPPLHRPQIALLLALHKLKVSDEQRKSAIDAYEPRVSFALSSGMYSSPVVRIYTAK NVREELEEAQRDFIRASVGVSSKGKLLVPKLLHCFAKGFVDDSNLAVWISHYLPSHQA AFVEQCISQTRQSLLGSRNCGILPFDSRFRYLFLPDKISLQ" mRNA complement(join(5476215..5476496,5476839..5477344, 5478779..5478916,5479482..5479631,5480420..5480533, 5480949..5481038,5481564..5481654,5481799..5481941, 5483118..5483372)) /locus_tag="TCM_027617" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s15040.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029452001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc875t19; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1940t3" CDS complement(join(5476340..5476496,5476839..5477344, 5478779..5478916,5479482..5479631,5480420..5480533, 5480949..5481038,5481564..5481654,5481799..5481836)) /locus_tag="TCM_027617" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY26197.1" /db_xref="Phytozome:GSVIVT01029452001" /db_xref="TAIR:AT3G13000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56W79" /translation="MCDSSVVQSAVCQNDSISNSSHSKAGSQLDIVGELQSSNSSFEG RKYSEETGSVESCFKSSDSYPYRFQLEQDVHKLQQKLQEEIELHSILKNAIEKNATEL SSPSCLPHHAQEVLSHIAVLEVTISKLEQEMVSLHFQLSQERNERRLAEYRLRHSFSP SISHSSRCLKHSNSELHHSSEDNACQEPTDQPSESTGESSSTESVRENAVDSLLHLDG KKISAKTDGKSCQPLQFEKISRGIPPKGLWDHPNQLSEEMVRCMRNIFIFLADSPIPS KSSAFESHNSTLSPRGHLSNSSWWSSSERSMIPSWVQSPQIDIQSNSEVLASENSFDP YRVRGKLSWAEIGNYSLANEVSCMSVGKKQLEYASGALRRFRILVEQLAKVNPIHLSS NEKLAFWINLYNALIMHVGFFVSFASMIFVMTSLE" gene 5484357..5507748 /locus_tag="TCM_027619" /note="dbxref CacaoGD:Thecc1EG027619" mRNA join(5484357..5484492,5489189..5489595,5492602..5492609, 5492712..5492801,5492880..5493535,5507532..5507748) /locus_tag="TCM_027619" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s21330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007490t1" /inference="similar to AA sequence:Phytozome:Glyma15g05870.2" /note="quality class is strong-utrpoor, express is strong, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc3773t1" CDS join(5492607..5492609,5492712..5492801,5492880..5493077) /locus_tag="TCM_027619" /note="paralog of Thecc1EG007490t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26198.1" /db_xref="Phytozome:Glyma15g05870.2" /translation="MNLFNLNKEREEGYFIVDGNFVEYRNDNEIKDVWLDNVEVDTKY IGKTSATTNNEDNNEVGTQDLSFQDIGIMKRRIVDVLKPGETVILHDDSYSV" mobile_element 5494941..5497020 /note="source:INTACT131_F13_scaffold_10-int 1 1996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5496925..5504675) /note="source:CACAO_M_S_E89200_F13_scaffold_8 640 8378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5504660..5506110) /note="source:CACAO_M_E42514_F40_scaffold_5 19247 20689" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5504666..5507824 /note="source:CACAO_M_E49106_F85_scaffold_6 1 3155" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5507730..5507903) /note="source:CACAO_M_E12386_F85_scaffold_3 1 154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5507813..5507920 /note="source:scaffold_4_CACTA_0494 10852 10957" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5507904..5508567 /note="source:CACAO_M_S_E64023_F13_scaffold_5 462 1124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5509029..5511889) /note="source:scaffold_3_CACTA_0384 2209 5074" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5512837..5515854 /note="source:INTACT481_F226_scaffold_1-int 8454 11425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5516350..5518258) /note="source:INTACT641_F282_scaffold_1-int 4345 6318" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5516711..5518839) /note="source:INTACT1391F_F387_scaffold_8-int 11123 13266" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5518942..5524514 /note="source:INTACT157_F155_scaffold_1-int 3857 9460" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5524430..5526693) /note="source:INTACT61_F128_scaffold_2-int 2856 4887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5526010..5526967 /note="source:INTACT157_F155_scaffold_1-int 10590 11275" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5526853..5526980) /note="source:INTACT58_F125_scaffold_5-int 2921 3043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5526974..5527286 /note="source:CACAO_Mutator_E1149_scaffold_5 4187 4468" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5527017..5527290) /note="source:INTACT1391F_F387_scaffold_8-int 14278 14526" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5527789..5528689) /note="source:INTACT641_F282_scaffold_1-int 5575 6497" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5528790..5528858) /note="source:scaffold_1_CACTA_0011 7441 7512" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5528859..5529620) /note="source:INTACT642F_F365_scaffold_5-int 1 795" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5534646..5534692) /note="source:CACAO_M_E49195_F17_scaffold_6 1619 1666" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5536154..5543142) /note="source:CACAO_on_S_E176_scaffold_5 1401 8337" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5543158..5545213) /note="source:CACAO_on_S_E176_scaffold_5 1 2064" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5545059..5545387 /note="source:scaffold_1_CACTA_0009 12931 13264" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5545156..5545530 /note="source:CACAO_Mutator_E39_scaffold_1 3175 3552" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5545205..5545563) /note="source:CACAO_Mutator_E1149_scaffold_5 1 354" /mobile_element_type="transposon:TIR/Mutator" gene complement(5548368..5554254) /locus_tag="TCM_027624" /note="dbxref CacaoGD:Thecc1EG027624" mRNA complement(join(5548368..5549232,5549312..5551100, 5552532..5552590,5553787..5554254)) /locus_tag="TCM_027624" /product="HAT transposon superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29777.m000277" /inference="similar to AA sequence:ricco:29777.m000277" /note="quality class is strong-expresste, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2028t2" CDS complement(join(5548835..5549232,5549312..5551043)) /locus_tag="TCM_027624" /note="dbxref ricco:29777.m000277" /codon_start=1 /product="HAT transposon superfamily protein, putative" /protein_id="EOY26199.1" /db_xref="TAIR:AT3G13020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HG19" /translation="MASSEASINVHDHGKAVDGKKQRVQCNYCGKEMSGFFRLKYHLG GVRGDVIPCEMVSEDVKELFKNMLPERGGRLSQEVRDLSRQDLPWKRNGCPNSNVAKK MRRQSCKSSGSRSGEDEIIDSMSEDDVKEPAILPSARIVSQSAVTGDPEEEPSCKQNK RCIGRFFYETGIDLTLVNSPSFQRMINDTHCPGQTNYKIPSCQELKGWILKDEVKEMQ EYVEKIRQSWASSGCSILLDGWIDEKGRNLVSFIVDCPQGPIYLHSSDVSASVDDVDA LQLLFDRVIDDVGVENVVQIIAFSTEGWVGAVGKQFMGRSKTVFWTVNASHCIELMLD KIAMMGEIRGTLENARTISKFIHGHLTVLNLLRDYTDGHDLIKPTKVRSAMPFVTLEN IIAEKKNLKAMFASSEWNTSAWASRAEGKRVADLVGDPSFWKGAGRVVKTALPLIRVL CLINGDDKPQMGYIYETMDQMKETIKKECNSKESQYMPFWELIDKIWDGHLHSPLHAA GHFLNPSLFYSTDFQSDSEVAFGLLCCMVRMIQSQPIQDKIVQQLEAYRNSEGAFGEG STVQQRTRFSSTMWWSTYGGRCPELQRFATRILSQTCVGASKYRLNRSLVEKLLTKGR NPVEQQLLSDLIFVHYNLQLQQQQRSQFGVNYDIAGDEIDAMDEWIVDDTPEIGSRDG DSAWKELDGAVNGGRPSSQVKEEYRQV" mobile_element complement(5556982..5560155) /note="source:CACAO_M_E53114_F328_scaffold_8 1 3204" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5564896..5564949 /note="source:INTACT563_F255_scaffold_10-int 6423 6474" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5566120..5566182 /note="source:INTACT83_F5_scaffold_9-int 12432 12494" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5566157..5566256 /note="source:scaffold_1_CACTA_0011 3483 3577" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5566232..5566504 /note="source:scaffold_1_CACTA_0011 3497 3754" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5566421..5566939 /note="source:CACAO_M_E3884_F22_scaffold_1 12529 13129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5567035..5568111) /note="source:INTACT601_F12_scaffold_10-int 1 1076" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5568762..5569058 /note="source:CACAO_M_S_E15589_F14_scaffold_2 391 686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5569056..5577540 /note="source:CACAO_M_S_E15589_F14_scaffold_2 971 9474" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5577334..5578335) /note="source:INTACT298_F14_scaffold_10-int 12195 13208" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5579800..5581325 /note="source:CACAO_M_E44631_F17_scaffold_6 1 1526" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5582771..5583453) /note="source:INTACT215F_F14_scaffold_3-int 6951 7653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5584011..5585266 /note="source:scaffold_4_CACTA_0498 9459 10714" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5586057..5586607 /note="source:scaffold_4_CACTA_0498 8086 8636" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5599658..5600976) /note="source:CACAO_M_S_E89272_F5_scaffold_8 8369 9678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5601725..5602707) /note="source:CACAO_M_E44631_F17_scaffold_6 1 950" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5602771..5603512 /locus_tag="TCM_027627" /note="dbxref CacaoGD:Thecc1EG027627" mRNA 5602771..5603512 /locus_tag="TCM_027627" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS 5603221..5603484 /locus_tag="TCM_027627" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26200.1" /translation="MVVEMFNSLMVKTIEENIYSDIPISEKNLNLCHLQYVDDALLFY QPNLECLLNMKRVLRCFQIVLRLNTNFLKSSLLGVGNVEELKT" gene <5604209..5617574 /locus_tag="TCM_027628" /note="dbxref CacaoGD:Thecc1EG027628" mRNA join(<5604209..5604316,5604420..5604448,5604565..5604677, 5606058..5606173,5617468..5617574) /locus_tag="TCM_027628" /product="Uncharacterized protein" /note="quality class is strongpartial, express is strong, homology is none, intron is strong, protein is utrpoor_partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03414t00001" CDS join(<5604209..5604316,5604420..5604448,5604565..5604571) /locus_tag="TCM_027628" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26201.1" /translation="IFHYFSLHSLSNSPQTLLQPSKTTLARIQPSKFESKGFYSSKML WRN" mobile_element complement(5606173..5606711) /note="source:CACAO_M_E14787_F15_scaffold_3 2205 2741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5610780..5611902 /note="source:INTACT139F_F15_scaffold_2-int 4116 5238" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5613710..5614723 /note="source:CACAO_M_E59744_F15_scaffold_9 6947 7958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5616048..5617460) /note="source:CACAO_M_E14787_F15_scaffold_3 1 1411" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5617327..5619898 /locus_tag="TCM_027629" /note="dbxref CacaoGD:Thecc1EG027629" mRNA join(5617327..5617481,5618383..5618430,5619309..5619898) /locus_tag="TCM_027629" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.83 coverage" CDS 5619673..5619897 /locus_tag="TCM_027629" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26202.1" /translation="MWHLRRFFSESCVQTSNIGTAVSSAVIGKKLMYLDISNVSRYLA IGGYLFAFLYVIIEVQSYFRLWFLVIIMHT" gene complement(5620291..5626681) /locus_tag="TCM_027630" /note="dbxref CacaoGD:Thecc1EG027630" mRNA complement(join(5620291..5621080,5621546..5621615, 5621712..5621784,5622081..5622120,5622221..5622297, 5622483..5622681,5622871..5623887,5626461..5626681)) /locus_tag="TCM_027630" /product="Transcription factor, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s15110.1" /inference="similar to AA sequence:Phytozome:POPTR_0007s15110.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b026724t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1932t5" mRNA complement(join(5620291..5621080,5621546..5621615, 5621712..5621784,5622081..5622120,5622221..5622297, 5622483..5622681,5622871..5623519,5623602..5623887, 5626461..5626668)) /locus_tag="TCM_027630" /product="Transcription factor, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s15110.1" /inference="similar to AA sequence:Phytozome:POPTR_0007s15110.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1932t5" CDS complement(join(5620736..5621080,5621546..5621615, 5621712..5621784,5622081..5622120,5622221..5622297, 5622483..5622681,5622871..5623519,5623602..5623627)) /locus_tag="TCM_027630" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transcription factor, putative isoform 1" /protein_id="EOY26203.1" /db_xref="Phytozome:POPTR_0007s15110.1" /db_xref="TAIR:AT3G13040.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RHS2" /translation="MFNLEAALSWMKVGMSSKTMNHPSYISVTQSEPSKGIGESHHTA ASPIHNFLSIGSEGQSSLAGECSSPHPFPFIRTESFKNNLKSGPSSPISPSSHAKSAF SRSSVFCTSLYLSSSSTSETQRQLGNLPFLPHPPTCGQSISAVDSSKSPVVFSEDLHN PYNEDHSEIIMKDFLNFPGDDCDGNFHGLHCESNNFTLTEQLELQFLSDELDIAIADH GENPRLDEIYETPQKLNVAFTCNQNSASVVPSTDACSSIRLSGPAAVHKPRMRWTPEL HECFVEAVSKLDGPEKATPKGVLKLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKT SSSEEKKAALSGNESDGKKKGGTHITEALRMQMEVQKQLHEQLELQRSLQLRIEEHAR YLQKILEEQQKAGSALLPSLSMSTPTDPSQNSELQPSSSSAIASPTQPSESKTELSSS LPSKHKAPEVNDCEPESSPKKLRTENKPESAADEAVVENPAQ" CDS complement(join(5620736..5621080,5621546..5621615, 5621712..5621784,5622081..5622120,5622221..5622297, 5622483..5622681,5622871..5623515)) /locus_tag="TCM_027630" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transcription factor, putative isoform 2" /protein_id="EOY26204.1" /db_xref="Phytozome:POPTR_0007s15110.1" /db_xref="TAIR:AT3G13040.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RHS2" /translation="MKVGMSSKTMNHPSYISVTQSEPSKGIGESHHTAASPIHNFLSI GSEGQSSLAGECSSPHPFPFIRTESFKNNLKSGPSSPISPSSHAKSAFSRSSVFCTSL YLSSSSTSETQRQLGNLPFLPHPPTCGQSISAVDSSKSPVVFSEDLHNPYNEDHSEII MKDFLNFPGDDCDGNFHGLHCESNNFTLTEQLELQFLSDELDIAIADHGENPRLDEIY ETPQKLNVAFTCNQNSASVVPSTDACSSIRLSGPAAVHKPRMRWTPELHECFVEAVSK LDGPEKATPKGVLKLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKKTSSSEEKKAAL SGNESDGKKKGGTHITEALRMQMEVQKQLHEQLELQRSLQLRIEEHARYLQKILEEQQ KAGSALLPSLSMSTPTDPSQNSELQPSSSSAIASPTQPSESKTELSSSLPSKHKAPEV NDCEPESSPKKLRTENKPESAADEAVVENPAQ" mobile_element 5627666..5630041 /note="source:CACAO_M_S_E32591_F276_scaffold_4 1 2596" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5630557..5632455) /note="source:scaffold_4_CACTA_0494 2171 4052" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5631917..5633118 /note="source:CACAO_M_E3248_F5_scaffold_1 3298 4497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5633119..5633244 /note="source:CACAO_M_S_E5234_F276_scaffold_1 2488 2613" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5633241..5636261 /note="source:INTACT622_F276_scaffold_7-int 2610 5627" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5636673..5636726 /note="source:CACAO_M_E3884_F22_scaffold_1 13219 13272" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5638270..5638362) /note="source:scaffold_1_CACTA_0011 7419 7510" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5639141..5639597 /note="source:INTACT135F_F90_scaffold_2-int 12864 13320" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5640060..5640265 /note="source:INTACT135F_F90_scaffold_2-int 13799 14004" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5640262..5640502 /note="source:CACAO_M_E58601_F7_scaffold_9 4053 4314" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5643010..5643074 /note="source:INTACT65_F13_scaffold_1-int 13422 13489" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5643727..5644275 /note="source:CACAO_M_E35674_F13_scaffold_5 10897 11445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5644951..5645126 /note="source:CACAO_M_E12297_F14_scaffold_3 18610 18786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5644975..5645663) /note="source:CACAO_M_E35811_F12_scaffold_5 15507 16194" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5645765..5645953 /note="source:CACAO_M_E35674_F13_scaffold_5 13148 13336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5646216..5647211 /note="source:CACAO_M_E44636_F323_scaffold_6 1 996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5647626..5649656 /note="source:CACAO_M_E44636_F323_scaffold_6 997 3027" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5649787..5649920) /note="source:CACAO_M_E72770_F13_scaffold_10 1021 1154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5650874..5651033 /note="source:CACAO_M_S_E4413_F3_scaffold_1 17086 17245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5651057..5651564 /note="source:CACAO_M_S_E4413_F3_scaffold_1 18055 18561" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5654664..5662474 /locus_tag="TCM_027633" /note="dbxref CacaoGD:Thecc1EG027633" mRNA join(5654664..5654849,5655680..5655959,5656858..5657095, 5657910..5658438,5658542..5658746,5659561..5659898) /locus_tag="TCM_027633" /product="Major facilitator superfamily protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029459001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039804t1" /inference="similar to AA sequence:Phytozome:Glyma08g24250.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1825t1; inference alignment:Newbler:10:TSA:cgbaL_g15553t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc903t5_C2" mRNA join(5654664..5654849,5655680..5655959,5656858..5657095, 5657910..5658438,5658544..5658746,5659563..5659898) /locus_tag="TCM_027633" /product="Major facilitator superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029459001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039804t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029459001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1825t2; alternateUTRof:Thecc1EG027633t1; inference alignment:Newbler:10:TSA:cgbaL_g15553t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc903t5_C2" mRNA join(5654782..5655389,5655680..5655959,5656858..5657095, 5657910..5658438,5658544..5658746,5659563..>5659785) /locus_tag="TCM_027633" /product="Major facilitator superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029459001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039804t2" /inference="similar to AA sequence:Phytozome:GSVIVT01029459001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15553t00001; inference alignment:Newbler:10:TSA:cgbaL_g15553t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc903t5_C2" mRNA join(5654824..5654849,5655680..5655959,5656858..5657095, 5657910..5658746,5659563..5659894) /locus_tag="TCM_027633" /product="Major facilitator superfamily protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029459001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039804t1" /inference="similar to AA sequence:Phytozome:Glyma08g24250.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc903t6_C2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc903t5_C2; inference alignment:Newbler:10:TSA:cgbaL_g15553t00001" mRNA join(5655081..5655389,5655680..5655959,5656858..5657095, 5657910..5658438,5658544..5658746,5659563..5660213, 5662200..5662474) /locus_tag="TCM_027633" /product="Major facilitator superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029459001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039804t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029459001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15553t00001" mRNA join(5655568..5655593,5655680..5655959,5656858..5657095, 5657910..5658438,5658544..5658746,5659563..5659894) /locus_tag="TCM_027633" /product="Major facilitator superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029459001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039804t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029459001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc903t2_C2; alternateUTRof:Thecc1EG027633t1; inference alignment:Newbler:10:TSA:cgbaL_g15553t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc903t5_C2" CDS join(5655688..5655959,5656858..5657095,5657910..5658438, 5658544..5658746,5659563..5659811) /locus_tag="TCM_027633" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG039804t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 1" /protein_id="EOY26205.1" /db_xref="Phytozome:GSVIVT01029459001" /db_xref="TAIR:AT3G13050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940M4" /translation="MGEDGTPTFTVDEALLAMGFGKFQILVLAYAGMGWVSEAMEMML LSFIGPAVQSIWGLSSHEESLITSVVFVGMLIGAYSWGVVSDKHGRRKGFLITAVVTS GAGFLSALAPNYVSLIILRCLVGLGLGGGPVLCSWFLEFIPAPSRGTWMVVFQGFWTV GTIFEASLAWFVMPTLGWRWLLALSSLPSSFLLLFYGLAPESPRFLCLKGRKAEALGI LEKIARLNGAKVPSGILVSDHEIELAGKSIPMEDTQLLPPKDSEYTTPMETNPNAGGI SSVLKLLSPELVRSTTLLWIVFFGNAFSYYGLVLLTTELHNGRNRCGPNELHSEKSQD VSYKDVFITTFAEFPGLLLSAATVDKFGRKFSMSIMFFLCCIFLPPLVFHQPQALTTG LLFGARICITTTFTVVYIYAPEIYPTSIRSTGVGVASSVGRIGGMVCPLVAVGLVHGC HQTAAILLFEIVIFVSGICVLFFPLETKGRDLSDSISSSKQTNQLV" CDS join(5655688..5655959,5656858..5657095,5657910..5658438, 5658544..5658746,5659563..5659811) /locus_tag="TCM_027633" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG039804t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 1" /protein_id="EOY26207.1" /db_xref="Phytozome:GSVIVT01029459001" /db_xref="TAIR:AT3G13050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940M4" /translation="MGEDGTPTFTVDEALLAMGFGKFQILVLAYAGMGWVSEAMEMML LSFIGPAVQSIWGLSSHEESLITSVVFVGMLIGAYSWGVVSDKHGRRKGFLITAVVTS GAGFLSALAPNYVSLIILRCLVGLGLGGGPVLCSWFLEFIPAPSRGTWMVVFQGFWTV GTIFEASLAWFVMPTLGWRWLLALSSLPSSFLLLFYGLAPESPRFLCLKGRKAEALGI LEKIARLNGAKVPSGILVSDHEIELAGKSIPMEDTQLLPPKDSEYTTPMETNPNAGGI SSVLKLLSPELVRSTTLLWIVFFGNAFSYYGLVLLTTELHNGRNRCGPNELHSEKSQD VSYKDVFITTFAEFPGLLLSAATVDKFGRKFSMSIMFFLCCIFLPPLVFHQPQALTTG LLFGARICITTTFTVVYIYAPEIYPTSIRSTGVGVASSVGRIGGMVCPLVAVGLVHGC HQTAAILLFEIVIFVSGICVLFFPLETKGRDLSDSISSSKQTNQLV" CDS join(5655688..5655959,5656858..5657095,5657910..5658438, 5658544..5658746,5659563..5659811) /locus_tag="TCM_027633" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG039804t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 1" /protein_id="EOY26208.1" /db_xref="Phytozome:GSVIVT01029459001" /db_xref="TAIR:AT3G13050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940M4" /translation="MGEDGTPTFTVDEALLAMGFGKFQILVLAYAGMGWVSEAMEMML LSFIGPAVQSIWGLSSHEESLITSVVFVGMLIGAYSWGVVSDKHGRRKGFLITAVVTS GAGFLSALAPNYVSLIILRCLVGLGLGGGPVLCSWFLEFIPAPSRGTWMVVFQGFWTV GTIFEASLAWFVMPTLGWRWLLALSSLPSSFLLLFYGLAPESPRFLCLKGRKAEALGI LEKIARLNGAKVPSGILVSDHEIELAGKSIPMEDTQLLPPKDSEYTTPMETNPNAGGI SSVLKLLSPELVRSTTLLWIVFFGNAFSYYGLVLLTTELHNGRNRCGPNELHSEKSQD VSYKDVFITTFAEFPGLLLSAATVDKFGRKFSMSIMFFLCCIFLPPLVFHQPQALTTG LLFGARICITTTFTVVYIYAPEIYPTSIRSTGVGVASSVGRIGGMVCPLVAVGLVHGC HQTAAILLFEIVIFVSGICVLFFPLETKGRDLSDSISSSKQTNQLV" CDS join(5655688..5655959,5656858..5657095,5657910..5658438, 5658544..5658746,5659563..>5659784) /locus_tag="TCM_027633" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG039804t2" /codon_start=1 /product="Major facilitator superfamily protein isoform 2" /protein_id="EOY26206.1" /db_xref="Phytozome:GSVIVT01029459001" /db_xref="TAIR:AT3G13050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940M4" /translation="MGEDGTPTFTVDEALLAMGFGKFQILVLAYAGMGWVSEAMEMML LSFIGPAVQSIWGLSSHEESLITSVVFVGMLIGAYSWGVVSDKHGRRKGFLITAVVTS GAGFLSALAPNYVSLIILRCLVGLGLGGGPVLCSWFLEFIPAPSRGTWMVVFQGFWTV GTIFEASLAWFVMPTLGWRWLLALSSLPSSFLLLFYGLAPESPRFLCLKGRKAEALGI LEKIARLNGAKVPSGILVSDHEIELAGKSIPMEDTQLLPPKDSEYTTPMETNPNAGGI SSVLKLLSPELVRSTTLLWIVFFGNAFSYYGLVLLTTELHNGRNRCGPNELHSEKSQD VSYKDVFITTFAEFPGLLLSAATVDKFGRKFSMSIMFFLCCIFLPPLVFHQPQALTTG LLFGARICITTTFTVVYIYAPEIYPTSIRSTGVGVASSVGRIGGMVCPLVAVGLVHGC HQTAAILLFEIVIFVSGICVLFFPLETKGRDLSDSISS" CDS join(5655688..5655959,5656858..5657095,5657910..5658438, 5658542..5658672) /locus_tag="TCM_027633" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG039804t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 5" /protein_id="EOY26209.1" /db_xref="Phytozome:Glyma08g24250.1" /db_xref="TAIR:AT3G13050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N5D2" /translation="MGEDGTPTFTVDEALLAMGFGKFQILVLAYAGMGWVSEAMEMML LSFIGPAVQSIWGLSSHEESLITSVVFVGMLIGAYSWGVVSDKHGRRKGFLITAVVTS GAGFLSALAPNYVSLIILRCLVGLGLGGGPVLCSWFLEFIPAPSRGTWMVVFQGFWTV GTIFEASLAWFVMPTLGWRWLLALSSLPSSFLLLFYGLAPESPRFLCLKGRKAEALGI LEKIARLNGAKVPSGILVSDHEIELAGKSIPMEDTQLLPPKDSEYTTPMETNPNAGGI SSVLKLLSPELVRSTTLLWIVFFGNAFSYYGLVLLTTELHNGRNRCGPNELHSEKSQD VSYKDVFITTFAESFLGSSYLLPQWINSVVSFQCQLCSSCVAFSCLHWYSISLRL" CDS join(5655688..5655959,5656858..5657095,5657910..5658482) /locus_tag="TCM_027633" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG039804t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 6" /protein_id="EOY26210.1" /db_xref="Phytozome:Glyma08g24250.1" /db_xref="TAIR:AT3G13050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N5D2" /translation="MGEDGTPTFTVDEALLAMGFGKFQILVLAYAGMGWVSEAMEMML LSFIGPAVQSIWGLSSHEESLITSVVFVGMLIGAYSWGVVSDKHGRRKGFLITAVVTS GAGFLSALAPNYVSLIILRCLVGLGLGGGPVLCSWFLEFIPAPSRGTWMVVFQGFWTV GTIFEASLAWFVMPTLGWRWLLALSSLPSSFLLLFYGLAPESPRFLCLKGRKAEALGI LEKIARLNGAKVPSGILVSDHEIELAGKSIPMEDTQLLPPKDSEYTTPMETNPNAGGI SSVLKLLSPELVRSTTLLWIVFFGNAFSYYGLVLLTTELHNGRNRCGPNELHSEKSQD VSYKDVFITTFAGIVLCLSSDNFIFL" gene 5660720..5682108 /locus_tag="TCM_027634" /note="dbxref CacaoGD:Thecc1EG027634" mRNA join(5660720..5660928,5680490..5680600,5680735..5681071, 5682048..5682108) /locus_tag="TCM_027634" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027637t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage" mobile_element 5661550..5666290 /note="source:CACAO_M_E45234_F22_scaffold_6 1 4712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5666291..5669262 /note="source:CACAO_M_S_E67131_F7_scaffold_6 1 2972" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5669263..5674740 /note="source:CACAO_M_E45234_F22_scaffold_6 4708 9733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5677864..5678022 /note="source:CACAO_M_E65323_F12_scaffold_9 8594 8743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5678553..5678662) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3187 3248" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(5680517..5680600,5680735..5681034) /locus_tag="TCM_027634" /note="paralog of Thecc1EG027637t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26211.1" /translation="MSDYGLLLHEGKVILEQGGRGVADVQVKLYASEIEEYMDLSSQD LDFDLNINMIMEERLKEVDEKDSNDDEGDDSVSLFAFMKLKPPSFTGSTVGKDSCRVL DTMERICGTLGALSTRSVTLASFRQ" mobile_element complement(5687350..5687465) /note="source:CACAO_M_E50525_F33_scaffold_7 3785 3900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5688426..5691260 /note="source:CACAO_M_S_E67134_F78_scaffold_6 1 2835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5695056..5695189 /note="source:scaffold_3_CACTA_0382 6319 6454" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5695086..5695387 /note="source:CACAO_M_E59641_F12_scaffold_9 10421 10719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5695388..5706101) /note="source:INTACT209_F33_scaffold_5-int 1 13894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5707607..5708547 /note="source:CACAO_M_E59641_F12_scaffold_9 12082 13005" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5708819..5722009) /locus_tag="TCM_027640" /note="dbxref CacaoGD:Thecc1EG027640" mRNA complement(join(5708819..5709294,5713510..5713748, 5721984..5722009)) /locus_tag="TCM_027640" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(5709157..5709294,5713510..5713734)) /locus_tag="TCM_027640" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26212.1" /translation="MSPQISRPQILSMAHRMKRLETRIDYHAQCFNVIEQMMRAYAEH VGMDMDTFLVLFDDPTIAAGADVDDDEEEEKNLTNTHLTEEAPMPTTFYPPPRRWLVL LFLFSPPSSDSSGKVIGW" mobile_element 5709283..5710286 /note="source:INTACT558_F9_scaffold_9-int 2 986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5711478..5711594 /note="source:scaffold_8_CACTA_0859 15826 15943" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5711600..5711782 /note="source:scaffold_8_CACTA_0859 16331 16494" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5711784..5713638) /note="source:INTACT462_F9_scaffold_5-int 8630 10412" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5713827..5716782 /note="source:CACAO_M_E44646_F33_scaffold_6 1 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5721963..5723329) /note="source:CACAO_M_S_E90022_F9_scaffold_8 13145 14494" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5723477..5723759 /note="source:CACAO_M_E86052_F15_scaffold_12 4119 4401" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5725001..5725655 /note="source:CACAO_M_E86052_F15_scaffold_12 4977 5630" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5726320..5726659 /note="source:CACAO_M_E86052_F15_scaffold_12 5815 6154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5728101..5729469) /note="source:CACAO_M_S_E6076_F9_scaffold_2 576 1984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5729934..5730058 /note="source:INTACT897F_F376_scaffold_6-int 1 125" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5730960..5737757 /note="source:INTACT897F_F376_scaffold_6-int 126 6923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5737758..5738327) /note="source:CACAO_on_SS_E42_scaffold_2 21483 22003" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5738672..5740399 /note="source:INTACT897F_F376_scaffold_6-int 126 1846" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5738959..5745108) /locus_tag="TCM_027643" /note="dbxref CacaoGD:Thecc1EG027643" mRNA complement(join(5738959..5739784,5740355..5740383, 5740635..5740911,5741021..5741241,5741385..5741474, 5745038..5745108)) /locus_tag="TCM_027643" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01035590001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036759t2" /inference="similar to AA sequence:ricco:30169.m006600" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc6311t1" CDS complement(join(5739616..5739784,5740355..5740383, 5740635..5740911,5741021..5741241,5741385..5741474, 5745038..5745079)) /locus_tag="TCM_027643" /note="dbxref ricco:30169.m006600; paralog of Thecc1EG036759t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26213.1" /db_xref="TAIR:AT4G31130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HG68" /translation="MDRGSQFPRPRHSKMAIRIKTMAYAVAVFGVKSFIYGIVAENKK PPSGNPQISTGGDHIICKYPSDPTVVLGFLSVASLAVSVLVGHFSVFYPYNGKSVPRY VFFRSMTFFVFFLVTSALSMLAAGMLFWVTITELLHLADNVHQDMNTTCPTAQSGLFG GAAFLALSASLFWLICLMLADDVRTEYFEEQEDRQAEAFTTDYDAKQQGETRDMTDAA YLSEIEPQLTPVARVRSISKQPLAALNRYHKYYYSVTGSAVGRSIFNHRIHVDMANI" mobile_element 5743977..5744188 /note="source:CACAO_on_S_E58_scaffold_2 1 230" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5744163..5744445) /note="source:INTACT714_F310_scaffold_9-int 10193 10488" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5744707..5744745 /note="source:CACAO_M_S_E38130_F233_scaffold_4 1 39" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5744734..5745377 /note="source:INTACT410F_F357_scaffold_4-int 110 754" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5745166..5747488) /note="source:INTACT280_F60_scaffold_5-int 8474 10918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5748087..5748236 /note="source:CACAO_Mariner_E180_scaffold_6 1523 1677" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 5750600..5750952 /note="source:scaffold_2_CACTA_0262 4917 5423" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5751152..5751278) /note="source:INTACT568_F81_scaffold_2-int 2821 2918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5751166..5754098 /note="source:CACAO_M_E44652_F230_scaffold_6 1 2933" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5754067..5754103) /note="source:INTACT263_F12_scaffold_6-int 7150 7186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5754141..5754685) /note="source:INTACT904F_F49_scaffold_6-int 9944 10460" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5754624..5772958 /locus_tag="TCM_027645" /note="dbxref CacaoGD:Thecc1EG027645" mRNA join(5754624..5754735,5770705..5770954,5771452..5771506, 5772925..5772958) /locus_tag="TCM_027645" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element 5754663..5755391 /note="source:CACAO_M_E3884_F22_scaffold_1 14193 14950" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(5754727..5754735,5770705..5770954,5771452..5771504) /locus_tag="TCM_027645" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26214.1" /translation="MFKLNMRMGKFLSEGAKFTLTIKRLINSTTHPNRHKKRDDYGQY LAGNVNLNGVIEVLCNEGVKWKMNKGVPMSFKASAMKSDHKLYDLSMEAKNEDKENDD Q" mobile_element complement(5756575..5756748) /note="source:INTACT568_F81_scaffold_2-int 2594 2763" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5757030..5757726) /note="source:scaffold_3_CACTA_0384 9619 10334" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5757729..5758322 /note="source:CACAO_M_E24592_F195_scaffold_4 20316 20971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5758323..5758456) /note="source:scaffold_3_CACTA_0384 8647 9380" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5759336..5759462) /note="source:CACAO_M_S_E6055_F310_scaffold_2 4909 5028" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5760915..5761050 /note="source:scaffold_2_CACTA_0262 4910 5045" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5764152..5765708 /note="source:scaffold_2_CACTA_0275 4782 6335" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5765709..5767332 /note="source:INTACT1334F_F383_scaffold_8-int 2929 4550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5769033..5769644 /note="source:scaffold_2_CACTA_0275 6330 6941" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5769770..5770233 /note="source:INTACT714_F310_scaffold_9-int 4242 4699" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5773653..5774393 /note="source:scaffold_2_CACTA_0275 4014 4755" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5774395..5774519 /note="source:scaffold_2_CACTA_0262 5239 5364" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5776572..5776618 /note="source:INTACT594_F265_scaffold_8-int 4484 4530" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5776623..5777390 /note="source:CACAO_M_E11944_F265_scaffold_2 99 857" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5777390..5779576) /note="source:scaffold_2_CACTA_0253 5714 7658" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5787273..5789030) /note="source:INTACT1334F_F383_scaffold_8-int 2926 4752" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5789029..5790053 /note="source:INTACT594_F265_scaffold_8-int 1890 2920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5793264..5793394 /note="source:CACAO_M_E453_F12_scaffold_1 3343 3472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5793280..5795800) /note="source:scaffold_5_CACTA_0596 5689 8172" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5793801..5795923) /note="source:CACAO_M_E43348_F5_scaffold_5 18064 20132" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5796720..5797320) /note="source:CACAO_M_E58324_F9_scaffold_9 23500 24069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5797322..5799057) /note="source:CACAO_M_E33870_F15_scaffold_4 1367 3099" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5799158..5800488) /note="source:CACAO_M_E33870_F15_scaffold_4 1 1330" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5800489..5801959) /note="source:CACAO_M_S_E85177_F5_scaffold_7 17951 18944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5801952..5802336 /note="source:CACAO_M_E43348_F5_scaffold_5 16624 17002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5802275..5802503) /note="source:CACAO_M_E58324_F9_scaffold_9 21590 21816" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5803876..5805627 /note="source:CACAO_M_E5899_F5_scaffold_2 17437 19197" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5808852..5808941) /note="source:CACAO_M_E43348_F5_scaffold_5 9481 9567" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5808958..5809449) /note="source:INTACT414_F210_scaffold_5-int 6697 7143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5809492..5812323 /note="source:CACAO_M_S_E67161_F289_scaffold_6 1 2832" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5812324..5812369) /note="source:INTACT414_F210_scaffold_5-int 9405 9450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5812441..5813151) /note="source:INTACT904F_F49_scaffold_6-int 9325 10052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5813878..5814889) /note="source:scaffold_8_CACTA_0859 16513 17506" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5814889..5815744) /note="source:INTACT414_F210_scaffold_5-int 5110 5955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5817805..5817979 /note="source:CACAO_M_E43348_F5_scaffold_5 19761 19934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5818084..5818227) /note="source:CACAO_Mariner_E229_scaffold_9 12439 12582" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(5819009..5821800) /note="source:INTACT414_F210_scaffold_5-int 1841 4565" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5822487..5824602) /note="source:CACAO_M_S_E86211_F313_scaffold_7 897 3010" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5822871..5826982 /note="source:scaffold_6_CACTA_0704 1 4112" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5827693..5827838 /note="source:CACAO_M_E33933_F9_scaffold_4 6396 6537" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5829570..5829640 /note="source:CACAO_M_E22186_F143_scaffold_3 9937 10005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5837609..5837688 /note="source:CACAO_M_S_E100121_F313_scaffold_9 1 76" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5839670..5840515 /note="source:scaffold_8_CACTA_0859 17080 17937" /mobile_element_type="transposon:TIR/CACTA" gene complement(5843369..5845141) /locus_tag="TCM_027653" /note="dbxref CacaoGD:Thecc1EG027653" mRNA complement(join(5843369..5843847,5844433..5844569, 5844753..5845141)) /locus_tag="TCM_027653" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002437t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(5843611..5843847,5844433..5844569, 5844753..5845101)) /locus_tag="TCM_027653" /note="paralog of Thecc1EG002437t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26215.1" /translation="MQPSPGNVVSPLPFAKDTVMVVSDGSASDQMDDDYEEDDTTDWN DEMDNNCEDNYVGRHDDCSKEDKGDNNDILDCNNSDGSTEHGTIVVFKDVQYNDLIYN NPIADDNGISSPDDKHFEVRVKQSCQAHFKIACKDKAFKFAVCAPKLPKGDYWQVCMF HKHLGVKNAVEKVYQDAYHDLCSYHLGKNLKNRFKCEDVTTIFTLATNCYRVTDFNRH MNKLKHLRKNAYDHLKKLYPKR" mobile_element complement(5846239..5849182) /note="source:CACAO_M_E11971_F279_scaffold_2 1 2936" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5849183..5849904 /note="source:INTACT904F_F49_scaffold_6-int 15 712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5850468..5850966 /note="source:INTACT414_F210_scaffold_5-int 11357 11849" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5853345..5855517) /note="source:INTACT162_F157_scaffold_6-int 8783 10950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5855721..5855979 /note="source:scaffold_2_CACTA_0248 9098 9390" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5858353..5858676 /note="source:CACAO_M_E12297_F14_scaffold_3 6346 6671" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5858777..5860110 /note="source:CACAO_M_E12297_F14_scaffold_3 11577 12911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5864899..5865335 /note="source:CACAO_M_E44599_F33_scaffold_6 7147 7583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5865336..5865842) /note="source:INTACT257_F186_scaffold_6-int 16671 17170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5865671..5870788 /note="source:scaffold_2_CACTA_0248 489 5750" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5870778..5872093) /note="source:INTACT51F_F15_scaffold_1-int 9944 11259" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5871281..5888485) /locus_tag="TCM_027657" /note="dbxref CacaoGD:Thecc1EG027657" mRNA complement(join(5871281..5871401,5884371..5885758, 5886272..5886556,5887742..5887827,5888480..5888485)) /locus_tag="TCM_027657" /product="Gag protease polyprotein" /inference="alignment:exonerate- protein:2:frave:gene06172.15" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008984t1" /inference="similar to AA sequence:Phytozome:POPTR_1126s00200.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc2056t4_G3" mobile_element 5872876..5873880 /note="source:INTACT132_F12_scaffold_9-int 11000 12007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5873738..5873900) /note="source:CACAO_M_E22375_F15_scaffold_3 7878 8033" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5873881..5876697 /note="source:scaffold_2_CACTA_0248 5735 8424" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5877114..5877306 /note="source:scaffold_2_CACTA_0248 8802 9013" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5877387..5878067 /note="source:CACAO_M_E11828_F15_scaffold_2 1 681" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5884195..5886711) /note="source:CACAO_M_E5390_F15_scaffold_2 1879 4440" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(5884472..5885752) /locus_tag="TCM_027657" /note="paralog of Thecc1EG008984t1" /codon_start=1 /product="Gag protease polyprotein" /protein_id="EOY26216.1" /db_xref="Phytozome:POPTR_1126s00200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GBB7" /translation="MPPRRGRPPLTRSVGRGKGRSQRHQPNIVEEESAASTIRAAPAA EQADSPPHPPSPQPPTGIPAMPTEAAQALAAFFAAMAGQAQTGQVPPVVPPTTPLVPP PVQDVSISKKLKEARQLGCVSFTGELDATVAKDWINQVSETLSDMKLNDDMKLMVATR LLEKRARTWWNSVKSRSATPQTWSDFLREFDGQYFTYFHQKEKKREFLSLKQGNLTVE EYETRFNELMLYVPDLVKSEQDQASYFEEGLRNEIRERMTVTGREPHKEVVQMALRAE KLATENRRIRTEFAKRRNPGMSYSQSVKRGKDSAISRSTTSISVTSPRPPFPPSQQRP SRFSRSAMTGSGKSFGGSDRCRNCGNYHSGLCREPTRCFQCGQTGHIRSNCPRLGRAT VVASSSPARTDIQRRDSSGVATETGSGHTVRCGE" mobile_element complement(5887259..5889382) /note="source:CACAO_M_E49108_F15_scaffold_6 1 2123" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5889385..5889659 /note="source:scaffold_2_CACTA_0248 9106 9419" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5890675..5890839) /note="source:scaffold_8_CACTA_0857 4382 4543" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5892029..5892772) /note="source:INTACT162_F157_scaffold_6-int 8040 8787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5892764..5892819 /note="source:scaffold_1_CACTA_0028 12754 12811" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5898290..5899610) /note="source:CACAO_M_E5627_F4_scaffold_2 11387 12711" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5899606..5903484) /note="source:CACAO_M_E45364_F328_scaffold_6 2171 6217" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5903492..5906449 /note="source:scaffold_4_CACTA_0503 3237 6182" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5906447..5908529) /note="source:INTACT135_F42_scaffold_4-int 10133 12239" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5908069..5908731 /note="source:INTACT774_F328_scaffold_5-int 2518 3174" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5912019..5918932 /locus_tag="TCM_027659" /note="dbxref CacaoGD:Thecc1EG027659" mRNA join(5912019..5912233,5913303..5913346,5913449..5913623, 5914291..5914367,5914453..5914962,5916227..5916769, 5917295..5917507,5918174..5918339,5918487..>5918512) /locus_tag="TCM_027659" /product="Evolutionarily conserved C-terminal region 5 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s00320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008783t1" /inference="similar to AA sequence:Phytozome:POPTR_0014s00320.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc363t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc363t11" mRNA join(5912019..5912233,5913303..5913340,5913449..5913623, 5914291..5914367,5914453..5914962,5916227..5916769, 5917295..5917507,5918174..5918339,5918487..>5918512) /locus_tag="TCM_027659" /product="Evolutionarily conserved C-terminal region 5 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s00320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008783t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s15150.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc363t11; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc363t11" mRNA join(5912083..5912233,5913160..5913340,5913449..5913623, 5914288..5914367,5914453..5914962,5916227..5916769, 5917295..5917507,5918174..5918932) /locus_tag="TCM_027659" /product="Evolutionarily conserved C-terminal region 5 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s00320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008783t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s15150.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2266t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc363t11" mRNA join(5912083..5912233,5913160..5913340,5913449..5913623, 5914291..5914367,5914453..5914962,5916227..5916769, 5917295..5917507,5918174..5918932) /locus_tag="TCM_027659" /product="Evolutionarily conserved C-terminal region 5 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s00320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008783t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s15150.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2266t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc363t11" mRNA join(5912137..5912233,5913160..5913340,5913449..5913623, 5914291..5914367,5914453..5914962,5916227..5916769, 5917295..5917507,5917781..5917897) /locus_tag="TCM_027659" /product="Evolutionarily conserved C-terminal region 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s00320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008783t1" /inference="similar to AA sequence:Phytozome:POPTR_0014s00320.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc363t11" mRNA join(5912196..5912233,5913303..5913340,5913449..5913623, 5914291..5914367,5914453..5914962,5916227..5916769, 5917295..5917507,5918174..5918919) /locus_tag="TCM_027659" /product="Evolutionarily conserved C-terminal region 5 isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s00320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008783t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s15150.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04533t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc363t11" CDS join(5912206..5912233,5913303..5913340,5913449..5913623, 5914291..5914367,5914453..5914962,5916227..5916769, 5917295..5917507,5918174..5918548) /locus_tag="TCM_027659" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG008783t1" /codon_start=1 /product="Evolutionarily conserved C-terminal region 5 isoform 6" /protein_id="EOY26222.1" /db_xref="Phytozome:POPTR_0007s15150.1" /db_xref="TAIR:AT3G13060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LDZ8" /translation="MAATPDRTPEEQHADPENVKEQPLSTKNETSVSPNSSQDAAPIG HPRSGASQSVSFGSGGDRNVYSPTIYAPQAQAFYYRGYDNAAGEWDEFAPYVNPEGLE LGSSGVYNDNPSLVFHTGYGYNPQMPYGPYSPVTTPLPSIGGDAQLYSPQQFPFSGPQ YYQQLVPPSMPYITSPTPVSQPELTTLVNVDQQGDNMLFGPRPSYPTPLGSFGRGSFP GNPGAVGFNDLPQGFDGLRSGGLWSDWSKPSDRQRSLTPISPAVSPQPIGPIGHNVAM ASQQQRSFYRLESGMNSYNRGYLQSGLNQGPSFGSASVPSLGANSRGWLSLDSNRRRG RGSGLSLCGCNGALDILSEQNRGPRASKPKNQITAEHNSSIDDNKNNKPSAKIHDESF NRPDFATDYKDAKFFIIKSYSEDNVHKSIKYGVWASTPNGNKKLDAAYREAKENQDTC PVFLFFSVNASAQFCGVAEMVGPVDFDKSVDYWQQDKWSGQFPVKWHIIKDVPNSQFR HIVLENNDNKPVTNSRDTQEVRLEHGIEMLNIFKNFDTDMSILDDFDFYEDRQKAMQE RKARQQASLMSVGVVGESEHRNTVTLSNDFIIKQMSKSFAQVVALDDGNKESTTIERT NAASDGSKGGRVNLEDAITAAVSSAQAS" CDS join(5912206..5912233,5913303..5913346,5913449..5913623, 5914291..5914367,5914453..5914962,5916227..5916769, 5917295..5917507,5918174..5918339,5918487..>5918512) /locus_tag="TCM_027659" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG008783t1" /codon_start=1 /product="Evolutionarily conserved C-terminal region 5 isoform 4" /protein_id="EOY26220.1" /db_xref="Phytozome:POPTR_0014s00320.1" /db_xref="TAIR:AT3G13060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LDZ8" /translation="MAATPDRTPEEQHADPENVKEQVVPLSTKNETSVSPNSSQDAAP IGHPRSGASQSVSFGSGGDRNVYSPTIYAPQAQAFYYRGYDNAAGEWDEFAPYVNPEG LELGSSGVYNDNPSLVFHTGYGYNPQMPYGPYSPVTTPLPSIGGDAQLYSPQQFPFSG PQYYQQLVPPSMPYITSPTPVSQPELTTLVNVDQQGDNMLFGPRPSYPTPLGSFGRGS FPGNPGAVGFNDLPQGFDGLRSGGLWSDWSKPSDRQRSLTPISPAVSPQPIGPIGHNV AMASQQQRSFYRLESGMNSYNRGYLQSGLNQGPSFGSASVPSLGANSRGWLSLDSNRR RGRGSGLSLCGCNGALDILSEQNRGPRASKPKNQITAEHNSSIDDNKNNKPSAKIHDE SFNRPDFATDYKDAKFFIIKSYSEDNVHKSIKYGVWASTPNGNKKLDAAYREAKENQD TCPVFLFFSVNASAQFCGVAEMVGPVDFDKSVDYWQQDKWSGQFPVKWHIIKDVPNSQ FRHIVLENNDNKPVTNSRDTQEVRLEHGIEMLNIFKNFDTDMSILDDFDFYEDRQKAM QERKARQQASLMSVGVVGESGRVNLEDA" CDS join(5912206..5912233,5913303..5913340,5913449..5913623, 5914291..5914367,5914453..5914962,5916227..5916769, 5917295..5917507,5918174..5918339,5918487..>5918512) /locus_tag="TCM_027659" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG008783t1" /codon_start=1 /product="Evolutionarily conserved C-terminal region 5 isoform 5" /protein_id="EOY26221.1" /db_xref="Phytozome:POPTR_0007s15150.1" /db_xref="TAIR:AT3G13060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LDZ8" /translation="MAATPDRTPEEQHADPENVKEQPLSTKNETSVSPNSSQDAAPIG HPRSGASQSVSFGSGGDRNVYSPTIYAPQAQAFYYRGYDNAAGEWDEFAPYVNPEGLE LGSSGVYNDNPSLVFHTGYGYNPQMPYGPYSPVTTPLPSIGGDAQLYSPQQFPFSGPQ YYQQLVPPSMPYITSPTPVSQPELTTLVNVDQQGDNMLFGPRPSYPTPLGSFGRGSFP GNPGAVGFNDLPQGFDGLRSGGLWSDWSKPSDRQRSLTPISPAVSPQPIGPIGHNVAM ASQQQRSFYRLESGMNSYNRGYLQSGLNQGPSFGSASVPSLGANSRGWLSLDSNRRRG RGSGLSLCGCNGALDILSEQNRGPRASKPKNQITAEHNSSIDDNKNNKPSAKIHDESF NRPDFATDYKDAKFFIIKSYSEDNVHKSIKYGVWASTPNGNKKLDAAYREAKENQDTC PVFLFFSVNASAQFCGVAEMVGPVDFDKSVDYWQQDKWSGQFPVKWHIIKDVPNSQFR HIVLENNDNKPVTNSRDTQEVRLEHGIEMLNIFKNFDTDMSILDDFDFYEDRQKAMQE RKARQQASLMSVGVVGESGRVNLEDA" CDS join(5913293..5913340,5913449..5913623,5914288..5914367, 5914453..5914962,5916227..5916769,5917295..5917507, 5918174..5918548) /locus_tag="TCM_027659" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG008783t1" /codon_start=1 /product="Evolutionarily conserved C-terminal region 5 isoform 3" /protein_id="EOY26219.1" /db_xref="Phytozome:POPTR_0007s15150.1" /db_xref="TAIR:AT3G13060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LDZ8" /translation="MDAEEQHADPENVKEQPLSTKNETSVSPNSSQDAAPIGHPRSGA SQSVSFGSGGDRNVYSPTIYAPQAQAFYYRAGYDNAAGEWDEFAPYVNPEGLELGSSG VYNDNPSLVFHTGYGYNPQMPYGPYSPVTTPLPSIGGDAQLYSPQQFPFSGPQYYQQL VPPSMPYITSPTPVSQPELTTLVNVDQQGDNMLFGPRPSYPTPLGSFGRGSFPGNPGA VGFNDLPQGFDGLRSGGLWSDWSKPSDRQRSLTPISPAVSPQPIGPIGHNVAMASQQQ RSFYRLESGMNSYNRGYLQSGLNQGPSFGSASVPSLGANSRGWLSLDSNRRRGRGSGL SLCGCNGALDILSEQNRGPRASKPKNQITAEHNSSIDDNKNNKPSAKIHDESFNRPDF ATDYKDAKFFIIKSYSEDNVHKSIKYGVWASTPNGNKKLDAAYREAKENQDTCPVFLF FSVNASAQFCGVAEMVGPVDFDKSVDYWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLE NNDNKPVTNSRDTQEVRLEHGIEMLNIFKNFDTDMSILDDFDFYEDRQKAMQERKARQ QASLMSVGVVGESEHRNTVTLSNDFIIKQMSKSFAQVVALDDGNKESTTIERTNAASD GSKGGRVNLEDAITAAVSSAQAS" CDS join(5913293..5913340,5913449..5913623,5914291..5914367, 5914453..5914962,5916227..5916769,5917295..5917507, 5918174..5918548) /locus_tag="TCM_027659" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG008783t1" /codon_start=1 /product="Evolutionarily conserved C-terminal region 5 isoform 2" /protein_id="EOY26218.1" /db_xref="Phytozome:POPTR_0007s15150.1" /db_xref="TAIR:AT3G13060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LDZ8" /translation="MDAEEQHADPENVKEQPLSTKNETSVSPNSSQDAAPIGHPRSGA SQSVSFGSGGDRNVYSPTIYAPQAQAFYYRGYDNAAGEWDEFAPYVNPEGLELGSSGV YNDNPSLVFHTGYGYNPQMPYGPYSPVTTPLPSIGGDAQLYSPQQFPFSGPQYYQQLV PPSMPYITSPTPVSQPELTTLVNVDQQGDNMLFGPRPSYPTPLGSFGRGSFPGNPGAV GFNDLPQGFDGLRSGGLWSDWSKPSDRQRSLTPISPAVSPQPIGPIGHNVAMASQQQR SFYRLESGMNSYNRGYLQSGLNQGPSFGSASVPSLGANSRGWLSLDSNRRRGRGSGLS LCGCNGALDILSEQNRGPRASKPKNQITAEHNSSIDDNKNNKPSAKIHDESFNRPDFA TDYKDAKFFIIKSYSEDNVHKSIKYGVWASTPNGNKKLDAAYREAKENQDTCPVFLFF SVNASAQFCGVAEMVGPVDFDKSVDYWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLEN NDNKPVTNSRDTQEVRLEHGIEMLNIFKNFDTDMSILDDFDFYEDRQKAMQERKARQQ ASLMSVGVVGESEHRNTVTLSNDFIIKQMSKSFAQVVALDDGNKESTTIERTNAASDG SKGGRVNLEDAITAAVSSAQAS" CDS join(5913293..5913340,5913449..5913623,5914291..5914367, 5914453..5914962,5916227..5916769,5917295..5917507, 5917781..5917870) /locus_tag="TCM_027659" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG008783t1" /codon_start=1 /product="Evolutionarily conserved C-terminal region 5 isoform 1" /protein_id="EOY26217.1" /db_xref="Phytozome:POPTR_0014s00320.1" /db_xref="TAIR:AT3G13060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LDZ8" /translation="MDAEEQHADPENVKEQPLSTKNETSVSPNSSQDAAPIGHPRSGA SQSVSFGSGGDRNVYSPTIYAPQAQAFYYRGYDNAAGEWDEFAPYVNPEGLELGSSGV YNDNPSLVFHTGYGYNPQMPYGPYSPVTTPLPSIGGDAQLYSPQQFPFSGPQYYQQLV PPSMPYITSPTPVSQPELTTLVNVDQQGDNMLFGPRPSYPTPLGSFGRGSFPGNPGAV GFNDLPQGFDGLRSGGLWSDWSKPSDRQRSLTPISPAVSPQPIGPIGHNVAMASQQQR SFYRLESGMNSYNRGYLQSGLNQGPSFGSASVPSLGANSRGWLSLDSNRRRGRGSGLS LCGCNGALDILSEQNRGPRASKPKNQITAEHNSSIDDNKNNKPSAKIHDESFNRPDFA TDYKDAKFFIIKSYSEDNVHKSIKYGVWASTPNGNKKLDAAYREAKENQDTCPVFLFF SVNASAQFCGVAEMVGPVDFDKSVDYWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLEN NDNKPVTNSRDTQEVSYRIKPLDLGDNDSSGNKASFFQQDLDP" gene 5921378..5953030 /locus_tag="TCM_027661" /note="dbxref CacaoGD:Thecc1EG027661" mRNA join(5921378..5921573,5921643..5921706,5923183..5923593, 5946118..5946241,5947001..5947498,5947592..5948268, 5952652..5953030) /locus_tag="TCM_027661" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016773t1" /inference="similar to AA sequence:Phytozome:Glyma07g25400.1" /note="quality class is weak, express is weak, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.20 coverage" mobile_element 5928800..5928822 /note="source:CACAO_M_E52239_F256_scaffold_7 8342 8359" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5928823..5929478) /note="source:CACAO_M_E52071_F15_scaffold_7 2440 3095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5930253..5930593) /note="source:INTACT1581F_F99_scaffold_9-int 7607 7947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5931226..5931532 /note="source:CACAO_M_E86338_F15_scaffold_15 10807 11113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5934224..5934272) /note="source:CACAO_M_S_E5046_F335_scaffold_1 18219 18268" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5935877..5935901) /note="source:CACAO_M_S_E119191_F3_scaffold_9 1664 1688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5935902..5936579) /note="source:CACAO_M_E52819_F33_scaffold_8 2240 2826" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5936564..5936956 /note="source:CACAO_on_S_E390_scaffold_9 7871 8263" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5937058..5939172) /note="source:INTACT215_F33_scaffold_4-int 1971 4089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5939839..5940016 /note="source:CACAO_M_E44599_F33_scaffold_6 7407 7583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5940017..5940199) /note="source:CACAO_M_S_E119191_F3_scaffold_9 11532 11708" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5940200..5943445 /note="source:CACAO_M_E44899_F328_scaffold_6 1 3194" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5943443..5944936) /note="source:CACAO_M_S_E119191_F3_scaffold_9 1 1493" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(5946213..5946241,5947001..5947498,5947592..5947817) /locus_tag="TCM_027661" /note="paralog of Thecc1EG016773t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26223.1" /db_xref="Phytozome:Glyma07g25400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B3J2" /translation="MRLIDRPPIRLQKKNLQASTNLQIMTKEEEAKYLLEYVVRLVQS LHSSIRRLAIQVNNFEIKLPIIQMIQTSIQFGRSPNDDLNAYIVNFLEICDTFKHNGV TNDVIRLRLFPFSLRDKIKSWLNSLIASFISTRDDLAQKFLAKLFPPTKTANMWNGIT SFVQFNPESLYEAWERTTIDATTSGALMDKSIDEAYDLLKEIAFNNYQWPCEKLVLRK VASVHELDGINAFTAQVTVLSKKFDTMDVHAI" mobile_element complement(5949241..5950850) /note="source:INTACT222_F33_scaffold_7-int 4190 5781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5950851..5954670 /note="source:INTACT213_F172_scaffold_10-int 1 5366" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5954669..5954982) /note="source:INTACT1341F_F15_scaffold_8-int 8089 8402" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5954962..5955620 /note="source:INTACT213_F172_scaffold_10-int 9932 10586" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5958646..5959891 /locus_tag="TCM_027663" /note="dbxref CacaoGD:Thecc1EG027663" mRNA 5958646..5959891 /locus_tag="TCM_027663" /product="Gag protease polyprotein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044856t1" /inference="similar to AA sequence:Phytozome:POPTR_1126s00200.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 5958714..5959577 /locus_tag="TCM_027663" /note="paralog of Thecc1EG044856t1" /codon_start=1 /product="Gag protease polyprotein" /protein_id="EOY26224.1" /db_xref="Phytozome:POPTR_1126s00200.1" /translation="MSVNRDVAAIVMGLREVPGRARLSQPDPVEGESAAPTFRAAPAV KPTKIPPPPTATPSVLAMSLEAVHALAAFLNVIMGQAQAGRVLPTVPPVVSPVPPPPP PVPPPVPDVSISKKLKEARQLGCTSFVGDLDATAAKDWITQVTETFIDMKLDDDMKLM VATRLLEKRARTWWSSVKSCSITPLTWIDFLQEFDDQYYTYFHQKEKKREFLSLQQGN LTIEEYEARFNELMSYVPDLVKSEQDQASYFEEGLRNEIRERMTVTGQEPHKEVVQMA LRVEKLTNENR" mobile_element 5959687..5961910 /note="source:CACAO_M_E56927_F33_scaffold_8 1 2227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5962019..5970772 /note="source:INTACT670_F33_scaffold_3-int 2235 9832" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5970561..5970797) /note="source:CACAO_M_S_E119530_F85_scaffold_9 345 575" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5974658..5975167) /note="source:CACAO_M_E69760_F9_scaffold_9 1062 1563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5975170..5977168) /note="source:CACAO_M_S_E66227_F42_scaffold_5 1102 3107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5977541..5978304) /note="source:CACAO_M_E53587_F207_scaffold_8 10899 11662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5978669..5979267) /note="source:CACAO_M_E53587_F207_scaffold_8 9931 10531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5981436..5982091 /note="source:scaffold_4_CACTA_0500 8264 8919" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5982092..5983325 /note="source:CACAO_M_E53587_F207_scaffold_8 19090 20325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5983326..5984424) /note="source:CACAO_M_E12933_F42_scaffold_3 1 1099" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5984434..5987764 /note="source:CACAO_M_E44698_F85_scaffold_6 1 3331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5987766..5988836) /note="source:CACAO_M_E69760_F9_scaffold_9 11952 13009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5990774..5993694 /note="source:INTACT190_F166_scaffold_7-int 3755 6679" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5995575..5995631 /note="source:scaffold_9_CACTA_0934 6322 6376" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6000263..6000403) /note="source:CACAO_M_E69760_F9_scaffold_9 11984 12132" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6000450..6001908 /note="source:CACAO_M_E52278_F17_scaffold_7 1 1473" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6003894..6009109 /locus_tag="TCM_027668" /note="dbxref CacaoGD:Thecc1EG027668" mRNA join(6003894..6004454,6005104..6005248,6005771..6006031, 6007017..6007098,6007350..6007546,6008239..6009109) /locus_tag="TCM_027668" /product="Polyketide cyclase/dehydrase and lipid transport superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s00330.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029461001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01623t00001" CDS join(6004186..6004454,6005104..6005248,6005771..6006031, 6007017..6007098,6007350..6007546,6008239..6008511) /locus_tag="TCM_027668" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Polyketide cyclase/dehydrase and lipid transport superfamily protein isoform 1" /protein_id="EOY26225.1" /db_xref="Phytozome:GSVIVT01029461001" /db_xref="TAIR:AT1G55960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9UY99" /translation="MKIWGWVELENEKMKSISSMGFWWWLNLRATLVALLVILIFHLS KKFYSKFLRTTSSSASASASSPSKSSTFHLHSPSSPISPPPDSQARNPEIVSDSDLKF LIDNLDEKLNDDDKWANVIYKQNNFLSYRAKCCKSKDRPLKYLSTTVFESCSPELLRD FYMDNDYRKQWDKTLFDHIQLQMDRTNGIEIGRTIKKFPLLTPREYVLAWRLWEGKDR TFYCFIKECEHPSAPRQKKYVRVRYFRSGWQIRKVPGRDASEIRMFHQEDAGLNVEMA KLAFAKGIWSYVCKMDNALRKYSVISHPLTSPAVSAATLIQKVPPELDTTSGVTSAAA STSMASCEPVNGESREKKLSRRPSKKLVAKSLLVLGGVICLSRGHSALGAKVAMAYIL TKLRKRGDSSSQSTQS" mRNA join(<6004336..6004454,6005771..6006031,6007017..6007098, 6007350..6007546,6008239..6008865) /locus_tag="TCM_027668" /product="Polyketide cyclase/dehydrase and lipid transport superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s00330.1" /inference="similar to AA sequence:Phytozome:POPTR_0014s00330.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00895t00004_C2; inference alignment:Newbler:10:TSA:cgbaP2_g01623t00001" CDS join(<6004338..6004454,6005771..6006031,6007017..6007098, 6007350..6007546,6008239..6008511) /locus_tag="TCM_027668" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Polyketide cyclase/dehydrase and lipid transport superfamily protein isoform 2" /protein_id="EOY26226.1" /db_xref="Phytozome:POPTR_0014s00330.1" /db_xref="TAIR:AT3G13062.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9UY99" /translation="PSNYIFISISISIITIKIIHFSSSLSFFTHFSSSRFSSKDRPLK YLSTTVFESCSPELLRDFYMDNDYRKQWDKTLFDHIQLQMDRTNGIEIGRTIKKFPLL TPREYVLAWRLWEGKDRTFYCFIKECEHPSAPRQKKYVRVRYFRSGWQIRKVPGRDAS EIRMFHQEDAGLNVEMAKLAFAKGIWSYVCKMDNALRKYSVISHPLTSPAVSAATLIQ KVPPELDTTSGVTSAAASTSMASCEPVNGESREKKLSRRPSKKLVAKSLLVLGGVICL SRGHSALGAKVAMAYILTKLRKRGDSSSQSTQS" mobile_element 6010340..6011269 /note="source:CACAO_M_E58877_F5_scaffold_9 17827 18728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6013142..6013538 /note="source:CACAO_M_E58877_F5_scaffold_9 6492 6762" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6013961..6017020 /note="source:CACAO_M_E58877_F5_scaffold_9 8104 11097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6017313..6017686) /note="source:CACAO_M_E3935_F390_scaffold_1 10885 11258" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6018964..6019243 /note="source:INTACT700_F304_scaffold_7-int 7775 8054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6021790..6022384 /note="source:CACAO_M_E58877_F5_scaffold_9 15243 15839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6022494..6023215 /note="source:INTACT700_F304_scaffold_7-int 11549 12278" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6025337..6027552 /note="source:CACAO_M_E58877_F5_scaffold_9 17085 20107" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6025673..6041802 /locus_tag="TCM_027671" /note="dbxref CacaoGD:Thecc1EG027671" mRNA join(6025673..6026196,6026414..6026654,6028187..6028525, 6028632..6028754,6033952..6034056,6034571..6034703, 6034844..6034915,6035035..6035100,6035575..6035646, 6035733..6035804,6036703..6036774,6036870..6036935, 6037056..6037121,6037206..6037525,6037973..6038244, 6038377..6038648,6039517..6039637,6040209..6040345, 6040436..6040592,6040720..6041802) /locus_tag="TCM_027671" /product="Strubbelig-receptor family 5 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006604" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029265t1" /inference="similar to AA sequence:ricco:30169.m006604" /note="transcript variant 1; alternatively spliced; quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1852t1" mRNA join(6025673..6026196,6026414..6026654,6028187..6028525, 6028632..6028754,6033952..6034056,6034571..6034703, 6034844..6034915,6035035..6035100,6035575..6035646, 6035733..6035804,6036703..6036774,6036870..6036935, 6037056..6037121,6037206..6037525,6037973..6038244, 6038377..6038648,6039517..6039637,6040209..6040326, 6040436..6040592,6040720..6041802) /locus_tag="TCM_027671" /product="Strubbelig-receptor family 5 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006604" /inference="similar to AA sequence:ricco:30169.m006604" /note="transcript variant 2; alternatively spliced; quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:PASA:2:TSA:puevd3b026766t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1852t1" CDS join(6026519..6026654,6028187..6028525,6028632..6028754, 6033952..6034056,6034571..6034703,6034844..6034915, 6035035..6035100,6035575..6035646,6035733..6035804, 6036703..6036774,6036870..6036935,6037056..6037121, 6037206..6037525,6037973..6038244,6038377..6038648, 6039517..6039637,6040209..6040345,6040436..6040592, 6040720..6040845) /locus_tag="TCM_027671" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006604; paralog of Thecc1EG029265t1" /codon_start=1 /product="Strubbelig-receptor family 5 isoform 1" /protein_id="EOY26227.1" /db_xref="TAIR:AT1G78980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6R2K1" /translation="MTFYRGYFFESAHHTGGTRDILSPRELSEKLAFANSTNNSHLRG HHLVPRLRLSLSLSTFSSTTQIELSPLFRQLWDPRSCRSVLLSLASAAAPLSLFLRSV LLPLASAVNPGVNLQILPPSRLRLRNFGAVHCFVSSHGRCGCRCCCPREAGGFLLAVP PLLYTRFSGSGGGTLHCLVPGHPGANSTILPDPKNSRLAGFFWHRNMHHFLLGYLILS LGILISLVHSKTDSPDVSALNVMFKSLNTPSQLSGWRANGGDPCDDSWEGIKCSGSSV TEIKLSDYELSGQLGYQLSSLTSVTTFDLSKNNLEGDIPYQLPPNAVHIDLSENKFSG TVPYSISQMTSLEDINLSHNQLNGQLSDMFGKLQKLKSFDVSFNQLSDKLPNSFANLA SINTLHLQDNQFTGSINVLADLPLNDLNVENNKFTGWIPNELKDIDNLETGGNSWSSG PAPPPPPGVQHSHPNGEGKESNDVEKSVVNAVIIAVSCLGVLVVLALLIAVFSKRRSP PPSSHFLDEEMISGRKGFTPLQSRELSPESYVGILKDPKEFKSMDSSVAIDMKSLQKS PSMGLKRSVSGRVSFSANEFASRLKGRRSTSVHAVPYSLADLQNATANFASGRLLGEG TIGRVYKAKYPDGKVLAVKKIESPLFQGERPEGFSEIVTNISKLHHPNIAELVGYCSE QGHNMLVYDYFRNGSLHEFLHVSDDFSKPLTWNTRIRIALGAARAVEYLHDSCSPPIV HKNIKSSNILLDLELNPHLSDYGMANFHQRTSQNLGLGYNAPECTTPAAYTLKSDVYS IGVVMLELLTGRMPLDSKRPKSEECLVKWASPKLHDIDALARMVDPALRGLYPLKSLP PFADIIALCVQSDPKLRPPMSEVVQALVRLVQQSTIHMREDLSASRRTEDSD" CDS join(6026519..6026654,6028187..6028525,6028632..6028754, 6033952..6034056,6034571..6034703,6034844..6034915, 6035035..6035100,6035575..6035646,6035733..6035804, 6036703..6036774,6036870..6036935,6037056..6037121, 6037206..6037525,6037973..6038244,6038377..6038648, 6039517..6039637,6040209..6040326,6040436..6040467) /locus_tag="TCM_027671" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006604" /codon_start=1 /product="Strubbelig-receptor family 5 isoform 2" /protein_id="EOY26228.1" /db_xref="TAIR:AT1G78980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6R2K1" /translation="MTFYRGYFFESAHHTGGTRDILSPRELSEKLAFANSTNNSHLRG HHLVPRLRLSLSLSTFSSTTQIELSPLFRQLWDPRSCRSVLLSLASAAAPLSLFLRSV LLPLASAVNPGVNLQILPPSRLRLRNFGAVHCFVSSHGRCGCRCCCPREAGGFLLAVP PLLYTRFSGSGGGTLHCLVPGHPGANSTILPDPKNSRLAGFFWHRNMHHFLLGYLILS LGILISLVHSKTDSPDVSALNVMFKSLNTPSQLSGWRANGGDPCDDSWEGIKCSGSSV TEIKLSDYELSGQLGYQLSSLTSVTTFDLSKNNLEGDIPYQLPPNAVHIDLSENKFSG TVPYSISQMTSLEDINLSHNQLNGQLSDMFGKLQKLKSFDVSFNQLSDKLPNSFANLA SINTLHLQDNQFTGSINVLADLPLNDLNVENNKFTGWIPNELKDIDNLETGGNSWSSG PAPPPPPGVQHSHPNGEGKESNDVEKSVVNAVIIAVSCLGVLVVLALLIAVFSKRRSP PPSSHFLDEEMISGRKGFTPLQSRELSPESYVGILKDPKEFKSMDSSVAIDMKSLQKS PSMGLKRSVSGRVSFSANEFASRLKGRRSTSVHAVPYSLADLQNATANFASGRLLGEG TIGRVYKAKYPDGKVLAVKKIESPLFQGERPEGFSEIVTNISKLHHPNIAELVGYCSE QGHNMLVYDYFRNGSLHEFLHVSDDFSKPLTWNTRIRIALGAARAVEYLHDSCSPPIV HKNIKSSNILLDLELNPHLSDYGMANFHQRTSQNLGLGYNAPECTTPAAYTLKSDVYS IGVVMLELLTVKDQNQKSAW" mobile_element 6028781..6028859 /note="source:INTACT642F_F365_scaffold_5-int 877 955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6030215..6030389 /note="source:INTACT319_F3_scaffold_1-int 4962 5139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6030402..6030782) /note="source:INTACT319_F3_scaffold_1-int 6126 6479" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6041369..6046240) /note="source:CACAO_M_E12058_F3_scaffold_2 1 7999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6046182..6046250 /note="source:CACAO_M_S_E16543_F3_scaffold_2 4823 4890" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6047735..6049593 /note="source:INTACT319_F3_scaffold_1-int 7459 9370" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6048616..6049706) /note="source:INTACT607_F3_scaffold_4-int 1413 2538" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6049652..6049714 /note="source:CACAO_M_S_E52027_F3_scaffold_5 215 277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6051251..6051750 /note="source:scaffold_2_CACTA_0249 1 547" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6051782..6051836 /note="source:scaffold_2_CACTA_0249 3560 3606" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6052193..6054952 /note="source:scaffold_2_CACTA_0249 541 3305" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6055294..6055321 /note="source:CACAO_M_E53587_F207_scaffold_8 8534 8560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6055322..6058451) /note="source:CACAO_M_E4863_F82_scaffold_2 175 3309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6058440..6058452) /note="source:CACAO_M_S_E88102_F85_scaffold_7 79 91" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6058453..6059269 /note="source:CACAO_M_E71577_F15_scaffold_10 1 801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6061732..6062076 /note="source:CACAO_M_E14920_F82_scaffold_3 252 594" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6062177..6062962 /note="source:CACAO_M_E23040_F82_scaffold_4 587 1373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6069212..6071021 /note="source:CACAO_M_E49_F82_scaffold_1 681 2491" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6071122..6071926 /note="source:CACAO_M_E53587_F207_scaffold_8 19526 20329" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6073743..6074012) /note="source:CACAO_M_E43590_F7_scaffold_5 6548 6815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6073965..6074034 /note="source:CACAO_M_S_E122136_F76_scaffold_10 16637 16706" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6074077..6074742 /note="source:scaffold_2_CACTA_0249 3271 3976" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6074684..6074754) /note="source:scaffold_2_CACTA_0249 4004 4084" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6076237..6079350) /note="source:CACAO_M_E58324_F9_scaffold_9 18474 21587" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6080149..6081772 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17966 19592" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6082388..6085372) /note="source:CACAO_M_S_E15214_F378_scaffold_2 1 3568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6085884..6087399) /note="source:CACAO_M_S_E65068_F306_scaffold_5 4600 6124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6087386..6087447 /note="source:CACAO_M_S_E65068_F306_scaffold_5 4600 4661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6088161..6089337 /note="source:INTACT724_F4_scaffold_8-int 7789 8984" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6091860..6094505 /note="source:CACAO_M_E44707_F144_scaffold_6 1 2646" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6095166..6095441 /note="source:CACAO_M_E58877_F5_scaffold_9 5277 5549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6096024..6096491 /note="source:CACAO_M_E58877_F5_scaffold_9 18660 19122" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6097666..6098077) /note="source:INTACT666_F293_scaffold_9-int 14926 15358" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6099538..6105498) /locus_tag="TCM_027675" /note="dbxref CacaoGD:Thecc1EG027675" mRNA complement(join(6099538..6101185,6102885..6102946, 6103164..6103705,6104486..6104909,6105032..6105498)) /locus_tag="TCM_027675" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002052t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage" CDS complement(join(6100296..6101185,6102885..6102946, 6103164..6103705,6104486..6104909,6105032..6105126)) /locus_tag="TCM_027675" /note="paralog of Thecc1EG002052t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26229.1" /translation="MFVEASRRLSRARWGVPGRDRKPPWRKYLKPCSFRKEVQRMMDE SKIEFYTEASESAVNMISKEFTHPTKIKPLTIFYEPKGEFVEDKTHAKMIIEVPKPFP YKDDKAVPWNYNCSVQVSKAKKWIAESQDDAVNITGVGGITRSGRCYSPEAFENLKNE KGKEKERSPREEKFVNTTYVGERTTPPIPRLSRTTKMVVSQILGKGYRAGAGLGKELQ GIRSPLRTTKNEERFGLGYKPTKKEREEMIAERRKERLARFKGHELEIRGMTYPHFYE TFRSEGCIFPESLTVGNRESVSALGGTFSDLSICATEEGEEQSRNVDEIPTTYLGPPN LKLSSWTTMSLPVTCDSISKIPNNECEDDNDSGFEVDFEKGRVARWQVLLSEYDIVYV SQKAIKGSAIADFLAERVEEDYEPMEFEFPDEDLMSICQTSGEESEKENWKIFFDGAS NALGHGIGVVLVSPEGDHYPVIAKLNFYCTNNVAEYEACVMGIQAAIERKIHILEVYG DSALVIYQLRGEWETRDSKLVRYHKYVSKLIENFDEICFNHLPRKENQMADVLATLAA MFKVGTNVKIQPIMINLRECPAHCSSVEEEIDGKPWYHDIVHYLKFQQYPDQSSENDK KTIRRLAMNFFLDGNILYKRSRDQTLLRCVDSTEARRIVEEFVEHM" mobile_element 6102660..6105065 /note="source:INTACT1427F_F390_scaffold_9-int 7511 9917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6105066..6106569) /note="source:CACAO_M_E43872_F85_scaffold_5 1190 2698" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6106688..6107386 /note="source:CACAO_M_E34392_F323_scaffold_5 2061 2729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6112497..6113053 /note="source:CACAO_M_E58877_F5_scaffold_9 17606 18162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6113491..6113973 /note="source:INTACT700_F304_scaffold_7-int 15717 16198" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6115250..6115546) /note="source:INTACT375F_F353_scaffold_3-int 75 385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6115293..6115556 /note="source:CACAO_M_E58877_F5_scaffold_9 8035 8341" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6116341..6116662) /note="source:scaffold_4_CACTA_0495 10441 10511" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6117048..6120133 /note="source:CACAO_M_S_E67217_F51_scaffold_6 1 3086" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6120925..6120981) /note="source:scaffold_4_CACTA_0495 7472 7528" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6121500..6121798) /note="source:CACAO_M_E49205_F4_scaffold_6 4083 4380" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6122539..6123510) /note="source:CACAO_M_E49205_F4_scaffold_6 2133 3124" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6123495..6124316) /note="source:scaffold_4_CACTA_0495 305 1174" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6126494..6127119) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17254 17778" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6130819..6131134 /note="source:CACAO_M_S_E89272_F5_scaffold_8 8041 8434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6135344..6139033) /note="source:INTACT643_F283_scaffold_2-int 3 3712" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6139993..6141851 /note="source:CACAO_M_S_E67218_F4_scaffold_6 1 1859" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6143056..6143122 /note="source:CACAO_M_S_E52697_F28_scaffold_5 6075 6138" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6144256..6154829 /locus_tag="TCM_027681" /note="dbxref CacaoGD:Thecc1EG027681" mRNA join(6144256..6144323,6147571..6147836,6149392..6149577, 6150251..6150340,6150425..6150622,6150762..6150846, 6151079..6151245,6151353..6151544,6151655..6151768, 6152074..6152193,6152295..6152417,6152521..6152619, 6152712..6152768,6152896..6153086,6153176..6153353, 6153468..6153548,6153645..6153728,6153948..6154829) /locus_tag="TCM_027681" /product="Beta-Amyrin Synthase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s00350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027369t1" /inference="similar to AA sequence:frave:gene05525" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc612t4" CDS join(6147636..6147836,6149392..6149577,6150251..6150340, 6150425..6150622,6150762..6150846,6151079..6151245, 6151353..6151544,6151655..6151768,6152074..6152193, 6152295..6152417,6152521..6152619,6152712..6152768, 6152896..6153086,6153176..6153353,6153468..6153548, 6153645..6153728,6153948..6154058) /locus_tag="TCM_027681" /note="dbxref frave:gene05525; paralog of Thecc1EG027369t1" /codon_start=1 /product="Beta-Amyrin Synthase" /protein_id="EOY26230.1" /db_xref="TAIR:AT1G78955.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82140" /translation="MWKLKIAEGVDGPYLYSTNNYVGRQTWEFDPDAGTPEERAEVEE ARQNFYKDRYQVKPSGDLLWRMQFLREQNFKQTIPAVKIEEGEQISYEKATAALRRAV HFFSALQASDGHWPAENAGPLFFLPPLVFSTYITGHLNTVFPEEHRREILRYIYYHQN EDGGWGLHIEGHSTMFCTALSYICMRILGVEPDGGQDNACARARKWILDHGSVTHMPS WGKTWLSILGVFDWSGSNPMPPEFWILPSFLPMHPAKMWCYCRMVYMPMSYLYGKRFV GPITPLIEQLREELYLQPYNEINWRKVRHLCAPEDIYYPHPLIQDLMWDSLYICTEPL LTRWPLNKLVREKALQVTIKHIHYEDENSRYITIGCVEKVLCMLACWAEEPNSDYFKK HLARIPDYLWVAEDGMKMQSFGSQEWDTGFAIQALLASNLTDEIGPVLKRGHDFIKKS QVKDNPSGDFKKMYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLMSMLPPEIVGEK MEPQQLYNAVNVLLSLQSKNGGLAAWEPAGAQDWLEMLNPTEFFADIVVEHEYVECTA SAIHALFLFKKLYPGHRKKEIDNFITNAVRYLENIQMPDGSWYGNWGVCFTYGSWFAL GGLAAAGKTYTNCLAVRKGVEFLLRTQRENGGWGESYKSCPDKRYVPLEEGRSNLVHT AWAMMGLIHAGQAERDPTPLHRAAKLIINSQLEDGDFPQQEITGVFMKNCMLHYAAYR NIYPLWALAEYRKRVPLA" mobile_element complement(6154341..6154888) /note="source:CACAO_M_S_E51565_F2_scaffold_4 13474 13997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6154885..6155000 /note="source:INTACT414_F210_scaffold_5-int 11604 11721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6154991..6155191 /note="source:INTACT193_F12_scaffold_1-int 797 993" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6155950..6165917 /note="source:CACAO_M_E44709_F9_scaffold_6 1 9968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6166018..6166570 /note="source:CACAO_M_E44709_F9_scaffold_6 9969 10521" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6167157..6167787 /note="source:CACAO_M_E44709_F9_scaffold_6 10522 11152" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6168015..6168874 /note="source:CACAO_M_E44709_F9_scaffold_6 11153 12012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6168975..6170093 /note="source:CACAO_M_E44709_F9_scaffold_6 12013 13131" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6171726..6179510 /note="source:CACAO_M_E44709_F9_scaffold_6 13132 20916" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6185572..6186307) /note="source:CACAO_M_E52278_F17_scaffold_7 1058 1821" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6186322..6188400) /note="source:CACAO_M_S_E66639_F28_scaffold_5 3559 5662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6195051..6195143 /note="source:INTACT19F_F94_scaffold_1-int 529 689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6196038..6196177 /note="source:INTACT414_F210_scaffold_5-int 11579 11721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6196854..6198055 /note="source:CACAO_M_S_E67224_F5_scaffold_6 1 1184" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6201679..6204621 /note="source:CACAO_M_E44714_F52_scaffold_6 1 2943" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6209760..6235471 /locus_tag="TCM_027690" /note="dbxref CacaoGD:Thecc1EG027690" mRNA join(6209760..6209834,6213608..6214343,6214439..6214559, 6215316..6215404,6216219..6216303,6216402..6216692, 6216771..6216861,6217195..6218095,6218311..6218471, 6218670..6218773,6218907..6219072,6219245..6219331, 6219480..6219616,6219745..6220077,6220177..6220467, 6220575..6220658,6220834..6220967,6221074..6221301, 6221416..6221587,6221675..6221929,6222024..6222701, 6235216..6235471) /locus_tag="TCM_027690" /product="Pleiotropic drug resistance 11" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g37760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022498t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s11590.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc5339t1" mobile_element complement(6210204..6212929) /note="source:CACAO_M_S_E85957_F12_scaffold_7 11238 13969" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(6213985..6214343,6214439..6214559,6215316..6215404, 6216219..6216303,6216402..6216692,6216771..6216861, 6217195..6218095,6218311..6218471,6218670..6218773, 6218907..6219072,6219245..6219331,6219480..6219616, 6219745..6220077,6220177..6220467,6220575..6220658, 6220834..6220967,6221074..6221301,6221416..6221587, 6221675..6221929,6222024..6222293) /locus_tag="TCM_027690" /note="paralog of Thecc1EG022498t1" /codon_start=1 /product="Pleiotropic drug resistance 11" /protein_id="EOY26231.1" /db_xref="Phytozome:POPTR_0006s11590.1" /db_xref="TAIR:AT1G66950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7PC84" /translation="MASALAGDDLAARSLSSGRRWGSARFREIWQSPPEVFDRSQRHD TEEDLMWAAIERLPMYDRLRKGLLRKVADNGNVVLDEVDVTKLGTQHKKQLMGSILKV VEEDNENFLRRLRDRTDRVGIEIPKIEVRFERLSVEGDVYVGSRALPTLLNVTLNTME SILGLIRLIPAKKRKIEILKDVSGMVKPSRMTLLLGPPAAGKTTLLLALAGKLDHDLR SCGRITYCGYEMSEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGMRYEILKE LSKREQEAGIKPDPEIDAFMKATAMAGQETSLVTDYILKILGLEICADTLVGDEMRRG ISGGEKKRLTTGEMLVGPAKAFFMDEISTGLDSSTTFQICKFMRQMVHVMDVTMVISL LQPAPETYDLFDDIILLSEGQIVYQGPTESVLEFFEYMGFKCPERKGVADFLQQVTSK KDQEQYWLKKDQPYRYVTVSDFVQGFNSFHVGQKLALDLMVPNDRSGGPYPALVTEKY GISNWELFWACFAREWLLMKRNLFVYIFKTTQITIMSLIGMTVFFRTEMHAGNLEDGG KFFGALFFSLINVMFNGMAELALTVLRLPVFYKQRDYLFYPAWAFSLPIWVLRIPLSF VESGIWIILTYYTIGFAPAPSRFFRQLLAFFGIHQMALSLFRFIAAVGRTQVIASTLG TFTLLIVFVLGGFIVSREDIKPWMIWGYYLSPMMYGQNAIVMNEFLDKRWNAQNNDTR INATTVGQVLLKTRGFFTEDYWFWICVGALFGFSVIFNILFIGALIYLNPLGDSKAIV VDKDETKKNEESFSGQHTEEGTATSVRNSSNVSHVVDRATRKGMVLPFLPLSLAFNHV NYYVDMPSEMKNQGVKEDRLQLLRDVSGAFREGILTALVGVTGAGKTTLMDVLAGRKT GGYIEGSISISGYPKNQATFNRVSGYCEQNDIHSPNVTVYESLLYSACLRLSSEIDTN TRKMFIEEVMELVELKPLRDALVGLPGIDGLSTEQRKRLTIAVELVANPSIIFMDEPT SGLDARAAAIVMRTVRNTVDTGRTIVCTIHQPSIDIFEAFDELLLMKRGGQIIYAGPL GRNSHNLVEYFEAVPGVPKIKDGYNPATWMLEISTPAVEGQLDVDFAEIYAKSSLYQR NQERIKELSTPAPGSNDLYFPTKYAQPFLSQCKVCFLKQHWSYLRNPQYNAIRFFITF VLGILFGLIFWNKGQQIAKQQDVLNFFGAMYSAVFFLGAVNASSVQAIVAIERTVFYR ERAAGMYSPLPYAFAQVAIETIYTSIQTLIYVLLLYLMIGYEWKAGKFLWFYYYITSS YVYFTLYGMMVVALTPGHQIAAIVMSFFLSFWNMFSGFLIPRPQIPIWWRWYYWATPV AWTLYGLITSQVGDKDTFLEVPGSADIPLKTYIKEMFGFEYDFLPVVAVAHICWCLLF FFVFAYGIKFLNFQRR" mobile_element 6228218..6229370 /note="source:scaffold_8_CACTA_0859 16513 17651" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6229479..6229737 /note="source:scaffold_8_CACTA_0859 17679 17937" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6233295..6233536) /note="source:INTACT365_F17_scaffold_9-int 3454 3673" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6239982..6247905) /locus_tag="TCM_027692" /note="dbxref CacaoGD:Thecc1EG027692" mRNA complement(join(6239982..6240706,6240819..6240903, 6241196..6241295,6246481..6246555,6246649..6246859, 6247012..6247905)) /locus_tag="TCM_027692" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS complement(join(6240539..6240706,6240819..6240903, 6241196..6241295,6246481..6246555,6246649..6246859, 6247012..6247329)) /locus_tag="TCM_027692" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26232.1" /translation="MEDLNKNENNVEMRDEVEDFDGNLNSNSINLDENELSCHNFAAK NGDMGECAIKNYDGEIECLPCLNPQLLCLNKANLLNFGMDIISYANEPLTLGGNVNEH PNCPVIVAENDMRDHGLNRNLCTSDKELLDGVVDQGDDNLLETDSGVKRGKGKPRGNR KNVNHSKTYVGGMVLRSMEFINSKDDVNIISSLEREDHDSKDMVKLKTKAHPRGQSSG ADPSDARPPMLHLPLKLTFEETSITSTITRIIKSNFSRPWPTWRQKSFTLAAVDATEV RSIWEKICKDYLMDSLGDECKKPTKDADGLNVNLLLTKGKQC" mobile_element 6247595..6248808 /note="source:INTACT1793F_F14_scaffold_10-int 9049 10260" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6248809..6250787) /note="source:CACAO_M_E52278_F17_scaffold_7 1 2055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6252248..6253765 /note="source:CACAO_M_E44718_F17_scaffold_6 1 1518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6253876..6255361 /note="source:CACAO_M_E44719_F17_scaffold_6 1 1486" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6255292..6256110) /locus_tag="TCM_027693" /note="dbxref CacaoGD:Thecc1EG027693" mRNA complement(join(6255292..6255676,6255755..6256110)) /locus_tag="TCM_027693" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007318t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(6255447..6255676,6255755..6256091)) /locus_tag="TCM_027693" /note="paralog of Thecc1EG007318t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26233.1" /translation="MMVVSDDNASDQIEDDVEEDNMADWNDKLQDDCEDDYIGRQDDC SEDDKGQHNDIQDCNHANGSTGHATTVVLKEVQCDDHATTVELEDVEGADPIYDNPIT LENNIRSLDDITTEESRSMDDHLYRGKVFPSKVELKQALSMLALKEHFEIKVKKSCYS RLEFGCKEKACKFALRATKLPEGEYWRA" mobile_element 6256370..6266378 /note="source:CACAO_M_E44720_F256_scaffold_6 1 10009" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6265421..6337204) /locus_tag="TCM_027696" /note="dbxref CacaoGD:Thecc1EG027696" mRNA complement(join(6265421..6265631,6269953..6270474, 6276609..6277384,6277469..6277614,6277936..6278582, 6278721..6278951,6279632..6280323,6280393..6280987, 6337069..6337204)) /locus_tag="TCM_027696" /product="Glycosyl hydrolases family 31 protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G11720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026926t3" /inference="similar to AA sequence:Phytozome:POPTR_0011s15780.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2075t1" mobile_element complement(6266754..6266827) /note="source:CACAO_M_E5899_F5_scaffold_2 22625 22699" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6266763..6269871 /note="source:INTACT84_F12_scaffold_5-int 7996 10706" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6271318..6271390) /note="source:CACAO_on_E565_scaffold_5 866 942" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(6271405..6272560) /note="source:CACAO_M_E69793_F13_scaffold_9 4310 5451" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6272560..6274215 /note="source:CACAO_on_E565_scaffold_5 4279 5929" /mobile_element_type="transposon:TIR/PIF-Harbinger" mRNA complement(join(6276468..6277190,6277592..6277794, 6277936..6278582,6278721..6278951,6279632..6280323, 6280393..6280716)) /locus_tag="TCM_027696" /product="Glycosyl hydrolases family 31 protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G11720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026926t3" /inference="similar to AA sequence:Phytozome:POPTR_0011s15750.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc960t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2075t1" mRNA complement(join(6276468..6277515,6277588..6277794, 6277936..6278582,6278721..6278951,6279632..6280323, 6280393..6280716)) /locus_tag="TCM_027696" /product="Glycosyl hydrolases family 31 protein isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT5G11720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026926t3" /inference="similar to AA sequence:Phytozome:POPTR_0011s15780.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc739t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2075t1" mRNA complement(join(6276468..6277515,6277588..6277791, 6277929..6278582,6278721..6278951,6279632..6280323, 6280393..6280716)) /locus_tag="TCM_027696" /product="Glycosyl hydrolases family 31 protein isoform 4" /inference="alignment:exonerate- protein:2:TAIR:AT5G11720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026926t3" /inference="similar to AA sequence:Phytozome:POPTR_0011s15750.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc739t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2075t1" mRNA complement(join(6276468..6277614,6277936..6278582, 6278721..6278951,6279632..6280323,6280393..>6280608)) /locus_tag="TCM_027696" /product="Glycosyl hydrolases family 31 protein isoform 5" /inference="alignment:exonerate- protein:2:TAIR:AT5G11720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026926t3" /inference="similar to AA sequence:Phytozome:POPTR_0011s15780.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2075t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2075t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc680t1" CDS complement(join(6276736..6277384,6277469..6277614, 6277936..6278582,6278721..6278951,6279632..6280323, 6280393..6280625)) /locus_tag="TCM_027696" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026926t3" /codon_start=1 /product="Glycosyl hydrolases family 31 protein isoform 1" /protein_id="EOY26234.1" /db_xref="Phytozome:POPTR_0011s15780.1" /db_xref="TAIR:AT5G11720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04931" /translation="MDKKRGRKAKSSVNSLFHLLISFSCLVHGKVEEVVGYGYAIQSV GVDQSGKLLKADLRLIKNSTIFGPDIQNLNLIASFDAGERLRIRITDSDDERWEVPQE IIPRRHGSFPQNHSSSLERRVLTHPSSNLIFTLYNTTPFGFAVSRRFSGDILFDTSPD ASDSGTFLVFKDQYIQLSSSLPKNRSSLYGLGEHTKSSFKLRTNDTLTLWNADIGSAN PDVNLYGSHPFYLDVRLGSEDGRVRTGSSHGVLLLNSNGMDIIYGGDRITYKIIGGII DLFIFEGPSPEMVVQQYTGLIGRPAPMPYWSFGFHQCRWGYKNVSDIEGVVAGYAKAG IPLEVMWTDIDYMDGFKDFTLDPINFPQEHMKNFVDTLHQNGQKYVLILDPGISVNKS YATYIRGMQADIFIKRDGIPYLGQVWPGSVYFPDFVNPEGRAFWGNEIKLFQDLLPFD GLWLDMNEISNFITSPPTPSSTFDSPPYLINNAGIRRPINNLTVPATSLHFGNITVYN AHNLYGLLEAKATNAALINVTGKRPFILSRSTFVGSGKYTAHWTGDNAATWDDLAYSI PSILSFGIFGIPMVGADICGFSGNTTEELCRRWIQLGAFYPFARDHSALNTRRQELYL WESVAATAKKVLGLRYQLLPHMYTLISQFLIGNGILVSPVLKPGAVSVDAYFPAGNWF DLFNHNISIIVENGEYIMLDAPPDHINVHVREGSILVLQGEALTTKEARSMPFHLLVV ASSKENSSGQVFLDDGEEVEMGGESRNWSLVKFHAVVVGDKLTIRSSVVNGEFAVSRN WTIDKLTFIGLEKVNGIKGYELPTNKNGNIYVTTSFHSNGDQFGIAEMSDLSLLVGEE FQLELKLNN" CDS complement(join(6276736..6277515,6277588..6277794, 6277936..6278582,6278721..6278951,6279632..6280323, 6280393..6280625)) /locus_tag="TCM_027696" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG026926t3" /codon_start=1 /product="Glycosyl hydrolases family 31 protein isoform 3" /protein_id="EOY26236.1" /db_xref="Phytozome:POPTR_0011s15780.1" /db_xref="TAIR:AT5G11720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04931" /translation="MDKKRGRKAKSSVNSLFHLLISFSCLVHGKVEEVVGYGYAIQSV GVDQSGKLLKADLRLIKNSTIFGPDIQNLNLIASFDAGERLRIRITDSDDERWEVPQE IIPRRHGSFPQNHSSSLERRVLTHPSSNLIFTLYNTTPFGFAVSRRFSGDILFDTSPD ASDSGTFLVFKDQYIQLSSSLPKNRSSLYGLGEHTKSSFKLRTNDTLTLWNADIGSAN PDVNLYGSHPFYLDVRLGSEDGRVRTGSSHGVLLLNSNGMDIIYGGDRITYKIIGGII DLFIFEGPSPEMVVQQYTGLIGRPAPMPYWSFGFHQCRWGYKNVSDIEGVVAGYAKAG IPLEVMWTDIDYMDGFKDFTLDPINFPQEHMKNFVDTLHQNGQKYVLILDPGISVNKS YATYIRGMQADIFIKRDGIPYLGQVWPGSVYFPDFVNPEGRAFWGNEIKLFQDLLPFD GLWLDMNEISNFITSPPTPSSTFDSPPYLINNAGIRRPINNLTVPATSLHFGNITVYN AHNLYGLLEAKATNAALINVTGKRPFILSRSTFVGSGKYTAHWTGDNAATWDDLAYSI PSILSFGIFGIPMVGADICGFSGNTTEELCRRWIQKHSQFGLIQKPKERRNSRINMTG LLPRAIPALNCTKPSKKSGSLWCLCFPFNDYDVLMLQLGAFYPFARVLGLRYQLLPHM YTLMYEAHTKGIPIARPLFFSFPRDINTYEISSQFLIGNGILVSPVLKPGAVSVDAYF PAGNWFDLFNHNISIIVENGEYIMLDAPPDHINVHVREGSILVLQGEALTTKEARSMP FHLLVVASSKENSSGQVFLDDGEEVEMGGESRNWSLVKFHAVVVGDKLTIRSSVVNGE FAVSRNWTIDKLTFIGLEKVNGIKGYELPTNKNGNIYVTTSFHSNGDQFGIAEMSDLS LLVGEEFQLELKLNN" CDS complement(join(6276736..6277614,6277936..6278582, 6278721..6278951,6279632..6280323,6280393..>6280607)) /locus_tag="TCM_027696" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG026926t3" /codon_start=1 /product="Glycosyl hydrolases family 31 protein isoform 5" /protein_id="EOY26238.1" /db_xref="Phytozome:POPTR_0011s15780.1" /db_xref="TAIR:AT5G11720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04931" /translation="RKAKSSVNSLFHLLISFSCLVHGKVEEVVGYGYAIQSVGVDQSG KLLKADLRLIKNSTIFGPDIQNLNLIASFDAGERLRIRITDSDDERWEVPQEIIPRRH GSFPQNHSSSLERRVLTHPSSNLIFTLYNTTPFGFAVSRRFSGDILFDTSPDASDSGT FLVFKDQYIQLSSSLPKNRSSLYGLGEHTKSSFKLRTNDTLTLWNADIGSANPDVNLY GSHPFYLDVRLGSEDGRVRTGSSHGVLLLNSNGMDIIYGGDRITYKIIGGIIDLFIFE GPSPEMVVQQYTGLIGRPAPMPYWSFGFHQCRWGYKNVSDIEGVVAGYAKAGIPLEVM WTDIDYMDGFKDFTLDPINFPQEHMKNFVDTLHQNGQKYVLILDPGISVNKSYATYIR GMQADIFIKRDGIPYLGQVWPGSVYFPDFVNPEGRAFWGNEIKLFQDLLPFDGLWLDM NEISNFITSPPTPSSTFDSPPYLINNAGIRRPINNLTVPATSLHFGNITVYNAHNLYG LLEAKATNAALINVTGKRPFILSRSTFVGSGKYTAHWTGDNAATWDDLAYSIPSILSF GIFGIPMVGADICGFSGNTTEELCRRWIQLGAFYPFARDHSALNTRRQELYLWESVAA TAKKVLGLRYQLLPHMYTLMYEAHTKGIPIARPLFFSFPRDINTYEISSQFLIGNGIL VSPVLKPGAVSVDAYFPAGNWFDLFNHNISIIVENGEYIMLDAPPDHINVHVREGSIL VLQGEALTTKEARSMPFHLLVVASSKENSSGQVFLDDGEEVEMGGESRNWSLVKFHAV VVGDKLTIRSSVVNGEFAVSRNWTIDKLTFIGLEKVNGIKGYELPTNKNGNIYVTTSF HSNGDQFGIAEMSDLSLLVGEEFQLELKLNN" CDS complement(join(6277109..6277190,6277592..6277794, 6277936..6278582,6278721..6278951,6279632..6280323, 6280393..6280625)) /locus_tag="TCM_027696" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026926t3" /codon_start=1 /product="Glycosyl hydrolases family 31 protein isoform 2" /protein_id="EOY26235.1" /db_xref="Phytozome:POPTR_0011s15750.1" /db_xref="TAIR:AT5G11720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04931" /translation="MDKKRGRKAKSSVNSLFHLLISFSCLVHGKVEEVVGYGYAIQSV GVDQSGKLLKADLRLIKNSTIFGPDIQNLNLIASFDAGERLRIRITDSDDERWEVPQE IIPRRHGSFPQNHSSSLERRVLTHPSSNLIFTLYNTTPFGFAVSRRFSGDILFDTSPD ASDSGTFLVFKDQYIQLSSSLPKNRSSLYGLGEHTKSSFKLRTNDTLTLWNADIGSAN PDVNLYGSHPFYLDVRLGSEDGRVRTGSSHGVLLLNSNGMDIIYGGDRITYKIIGGII DLFIFEGPSPEMVVQQYTGLIGRPAPMPYWSFGFHQCRWGYKNVSDIEGVVAGYAKAG IPLEVMWTDIDYMDGFKDFTLDPINFPQEHMKNFVDTLHQNGQKYVLILDPGISVNKS YATYIRGMQADIFIKRDGIPYLGQVWPGSVYFPDFVNPEGRAFWGNEIKLFQDLLPFD GLWLDMNEISNFITSPPTPSSTFDSPPYLINNAGIRRPINNLTVPATSLHFGNITVYN AHNLYGLLEAKATNAALINVTGKRPFILSRSTFVGSGKYTAHWTGDNAATWDDLAYSI PSILSFGIFGIPMVGADICGFSGNTTEELCRRWIQKHSQFGLIQKPKERRNSRINMTG LLPRAIPALNCTKPSKKSGSLWCLCFPFNDYDVLMLQLGAFYPFAEYLGAARRSPDDK RSSKHAISPPSCG" CDS complement(join(6277742..6277791,6277929..6278582, 6278721..6278951,6279632..6280323,6280393..6280625)) /locus_tag="TCM_027696" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG026926t3" /codon_start=1 /product="Glycosyl hydrolases family 31 protein isoform 4" /protein_id="EOY26237.1" /db_xref="Phytozome:POPTR_0011s15750.1" /db_xref="TAIR:AT5G11720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04931" /translation="MDKKRGRKAKSSVNSLFHLLISFSCLVHGKVEEVVGYGYAIQSV GVDQSGKLLKADLRLIKNSTIFGPDIQNLNLIASFDAGERLRIRITDSDDERWEVPQE IIPRRHGSFPQNHSSSLERRVLTHPSSNLIFTLYNTTPFGFAVSRRFSGDILFDTSPD ASDSGTFLVFKDQYIQLSSSLPKNRSSLYGLGEHTKSSFKLRTNDTLTLWNADIGSAN PDVNLYGSHPFYLDVRLGSEDGRVRTGSSHGVLLLNSNGMDIIYGGDRITYKIIGGII DLFIFEGPSPEMVVQQYTGLIGRPAPMPYWSFGFHQCRWGYKNVSDIEGVVAGYAKAG IPLEVMWTDIDYMDGFKDFTLDPINFPQEHMKNFVDTLHQNGQKYVLILDPGISVNKS YATYIRGMQADIFIKRDGIPYLGQVWPGSVYFPDFVNPEGRAFWGNEIKLFQDLLPFD GLWLDMNEISNFITSPPTPSSTFDSPPYLINNAGIRRPINNLTVPATSLHFGNITVYN AHNLYGLLEAKATNAALINVTGKRPFILSRSTFVGSGKYTAHWTGDNAATWDDLAYSI PSILSFGIFGIPMVGADICGFSGNTTEELCRRWIQVRTFSIWTDSKTERKKKL" mobile_element complement(6288726..6289520) /note="source:scaffold_8_CACTA_0859 16683 17476" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6292462..6292932 /note="source:INTACT298_F14_scaffold_10-int 3094 3564" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6292933..6294424 /note="source:INTACT146F_F14_scaffold_2-int 10476 11964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6294360..6294534) /note="source:CACAO_M_E43590_F7_scaffold_5 9472 9655" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6294425..6295849 /note="source:CACAO_M_S_E85957_F12_scaffold_7 6861 8286" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6295950..6297343) /note="source:CACAO_M_E14779_F15_scaffold_3 1 1391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6297344..6297718) /note="source:CACAO_M_E3884_F22_scaffold_1 7036 7409" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6297630..6297735 /note="source:INTACT30F_F12_scaffold_1-int 14622 14728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6297719..6302295) /note="source:INTACT657_F288_scaffold_5-int 5106 9691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6302287..6302367 /note="source:CACAO_M_E59641_F12_scaffold_9 1722 1775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6305183..6305263 /note="source:INTACT774_F328_scaffold_5-int 4506 4586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6305191..6310393) /note="source:INTACT657_F288_scaffold_5-int 1 5172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6310365..6310398) /note="source:CACAO_M_S_E119191_F3_scaffold_9 3399 3432" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6315331..6315382 /note="source:CACAO_M_E33933_F9_scaffold_4 5345 5400" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6316098..6319887 /note="source:INTACT12_F107_scaffold_9-int 761 4367" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6320017..6320728) /note="source:CACAO_M_S_E17060_F3_scaffold_3 6096 6619" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6320510..6320743) /note="source:scaffold_9_CACTA_0937 15143 15369" /mobile_element_type="transposon:TIR/CACTA" gene 6320930..6322261 /locus_tag="TCM_027698" /note="dbxref CacaoGD:Thecc1EG027698" mRNA 6320930..6322261 /locus_tag="TCM_027698" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.36 coverage" CDS 6321741..6322175 /locus_tag="TCM_027698" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26239.1" /translation="MALFFFLNGSKNSPSTQLFPSSHFLSHARFSLCFSFSPFLLCSL VSLLHSLNRPLSSSWSSSLRLVNYIYIYIYIYIYIYHKLPTGHITIFFFFSFTCCFTW PAPPSNSPSKESLTLLLTTWAAAHVGPLIYLFYLFYYYFTLC" mobile_element complement(6322431..6322802) /note="source:CACAO_M_S_E38262_F319_scaffold_4 3011 3383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6323048..6324458) /note="source:CACAO_M_S_E14008_F3_scaffold_2 2 1419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6329693..6330999) /note="source:CACAO_M_S_E4787_F60_scaffold_1 3363 4691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6331319..6332166) /note="source:scaffold_9_CACTA_0937 10129 10957" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6335429..6335497 /note="source:CACAO_M_E427_F230_scaffold_1 1091 1152" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6335495..6337225 /note="source:CACAO_M_E44734_F60_scaffold_6 1 1731" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6337254..6341071 /locus_tag="TCM_027699" /note="dbxref CacaoGD:Thecc1EG027699" mRNA join(6337254..6338561,6340240..6340427,6340521..6341071) /locus_tag="TCM_027699" /product="Cytochrome P450" /inference="alignment:exonerate- protein:2:ricco:30152.m002401" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027704t1" /inference="similar to AA sequence:ricco:30018.m000548" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1897t1" CDS join(6337613..6338561,6340240..6340427,6340521..6340820) /locus_tag="TCM_027699" /note="dbxref ricco:30018.m000548; paralog of Thecc1EG027704t1" /codon_start=1 /product="Cytochrome P450" /protein_id="EOY26240.1" /db_xref="TAIR:AT5G36110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4YF72" /translation="MDPIILLFCTIFFAAISLGVLLYSKNPNASHPNLPPGRMGLPLI GESLEYLLTGRKGYPEKFLNDRMAKYSSQVFKTSILGESMAVVCGAAGNKFLFSNENK LVTAWWPDSVNKIFPSSTQTSSKEESKKMRKMLPNFLKPEALQRYIGMMDNIAQRHFE ASWEGKQEITVFPLAKRYTFWVACKVFLSIEDPEHVSKFADPFNALASGIISVPINLP GTPFRRAINASELIRKELMAIIKQRKIDLAENKAAPNQDILSHMLLATDENGQYLNEL NIADRILGLLIGGHDTASAAITFIIKYLAELPDIYNEVYKEQMEIARSKEPGELLNWE DIQKMKYSWNVACEVMRLAPPLQGAFREAITDFTFSGFSIPKGWKLHWNVNSTHKNVE CFPEPEKFDPTRFEGNGPAPYTFVPFGGGPRMCPGKEYARLEILVFMHNVMKRFNWEK LLPDEKIIVDPLPMPAKGLPVRLLPHKP" gene complement(6341075..6345023) /locus_tag="TCM_027700" /note="dbxref CacaoGD:Thecc1EG027700" mRNA complement(join(6341075..6341371,6342818..6342877, 6343775..6344041,6344564..6344754,6344879..6345023)) /locus_tag="TCM_027700" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016766t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(6341351..6341371,6342818..6342877, 6343775..6344041,6344564..6344746)) /locus_tag="TCM_027700" /note="paralog of Thecc1EG016766t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26241.1" /translation="MPRGVTSTTIVLLPKKIDAMQWSDFQLISLCIILNKTIIKILAN RLAKILSSIITENQSGLKSCFITHNNALSSRKQIIVNVIGFVHKALPIAYLGASLNKG LTKVILFASLVDKIRDKLLGWENKILSSGDLITLLQSVLFSMSIYLLQNISQVIWAWA YSGNYSKPGHHDDMTC" mobile_element 6345613..6346793 /note="source:CACAO_M_S_E67256_F5_scaffold_6 1 1181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6350704..6351560) /note="source:CACAO_Mutator_E592_scaffold_3 19606 20372" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6352359..6355165) /note="source:CACAO_Mutator_E1018_scaffold_5 1745 4640" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6355164..6356217) /note="source:CACAO_Mutator_E592_scaffold_3 13211 14269" /mobile_element_type="transposon:TIR/Mutator" mobile_element 6356620..6356675 /note="source:CACAO_Mutator_E1320_scaffold_6 7875 7936" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6356634..6356680) /note="source:CACAO_PIF_E119_scaffold_3 7513 7557" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(6360437..6360502) /note="source:CACAO_Mutator_E592_scaffold_3 7577 7641" /mobile_element_type="transposon:TIR/Mutator" mobile_element 6360503..6361889 /note="source:CACAO_M_E14375_F318_scaffold_3 1 1326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6361993..6363762 /note="source:CACAO_M_E68730_F230_scaffold_9 1113 2873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6365745..6367400) /note="source:CACAO_Mutator_E592_scaffold_3 4030 5690" /mobile_element_type="transposon:TIR/Mutator" gene complement(6367498..6372020) /locus_tag="TCM_027704" /note="dbxref CacaoGD:Thecc1EG027704" mRNA complement(join(6367498..6368149,6368266..6368453, 6369497..6370694,6371837..6372020)) /locus_tag="TCM_027704" /product="Cytochrome P450" /inference="alignment:exonerate- protein:2:ricco:28226.m000875.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027699t1" /inference="similar to AA sequence:ricco:28226.m000875" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc156t1" CDS complement(join(6367847..6368149,6368266..6368453, 6369497..6370454)) /locus_tag="TCM_027704" /note="dbxref ricco:28226.m000875; paralog of Thecc1EG027699t1" /codon_start=1 /product="Cytochrome P450" /protein_id="EOY26242.1" /db_xref="TAIR:AT5G36110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4YF72" /translation="MELFFLCGLTLFTLFVFFSLFSIFSYACKTNASQPNLPPGKTGL PYIGESLEFLSTGRKGHPEKFIYDRMAKFSSQVFRTSILGEATAVFCGAAGNKFLFSN ENKLVTAWWPNSVNKVFPSSTQTSSKEEAKKMRKLLPNFLKPEALQRYVGMMDTIAQR HFESGWEGQQEVSVFPLAKNYTFWVASKVFLSVEDPKHVAKLGDPFNVLASGIISIPI DLPGTPFNRAIKASNLIRKELTAIIKQRKIDLAEKKASPTQDILSHMLLTSDENGRYM NELDIADKILGLLIGGHDTASAAITFIVKYLAELPEIYQKVQSEQMEIAKSKAPGELL NWDDIQKMKYSWNVACEVLRLAPPLQGAFREALNEFIYAGFNIPKGWKLYWSANSTHR NPECFPEPEKFDPSRFEGNGPAPYTFVPFGGGPRMCPGKEYARLEILVFMHNIVKRFN WEKLLPDENIIVDPMPMPAKGLPVRLLPQTTA" gene complement(6375174..6378002) /locus_tag="TCM_027705" /note="dbxref CacaoGD:Thecc1EG027705" mRNA complement(join(6375174..6376323,6377649..6378002)) /locus_tag="TCM_027705" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010352t1" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS complement(6375735..6376124) /locus_tag="TCM_027705" /note="paralog of Thecc1EG010352t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26243.1" /translation="MRGMLKFNVDKDAKGNPRESGIGDAFKDDEGKMLSQCSLFVGVL DANTTKILTIKKAFQIIVAFRWGIVDKVIMENDSENVVKWAKEPSTTFWKLRTTMMRM EFFKSKLKDWSFFENFKICKWCCKFLG" mobile_element complement(6377138..6377582) /note="source:CACAO_on_E205_scaffold_7 4771 5189" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6377158..6377644) /note="source:INTACT458_F219_scaffold_7-int 2629 2981" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6377791..6378077) /note="source:INTACT458_F219_scaffold_7-int 16834 17081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6377933..6378391 /note="source:INTACT444_F216_scaffold_4-int 18281 18742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6378412..6379968) /note="source:INTACT458_F219_scaffold_7-int 14983 16559" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6378618..6379980) /note="source:CACAO_M_E34142_F67_scaffold_4 3689 5117" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6385922..6386016) /note="source:scaffold_2_CACTA_0262 881 980" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6387401..6387461) /note="source:scaffold_2_CACTA_0253 3465 3522" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6388578..6390307) /note="source:scaffold_2_CACTA_0253 7252 8995" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6392063..6393204 /note="source:CACAO_on_E745_scaffold_10 1 1133" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(6396732..6396894) /note="source:CACAO_M_E68991_F244_scaffold_9 2021 2182" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6399302..6407070) /locus_tag="TCM_027707" /note="dbxref CacaoGD:Thecc1EG027707" mRNA complement(join(6399302..6399415,6404860..6405176, 6406501..6406600,6406683..6406836,6406900..6407070)) /locus_tag="TCM_027707" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" mobile_element complement(6400675..6401935) /note="source:INTACT88_F12_scaffold_4-int 11866 13124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6402337..6402585) /note="source:INTACT88_F12_scaffold_4-int 11337 11555" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6404136..6404212) /note="source:CACAO_M_E35674_F13_scaffold_5 3667 3741" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(6404912..6405176,6406501..6406600, 6406683..6406836,6406900..6407016)) /locus_tag="TCM_027707" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26244.1" /translation="MIGKGASIYFWMDKWRLANEPLSAKYLRLFSLVVDNDAQDNDAY NEILLELSNAVLVPRKENRLLWKHHPKGHFSVKIFCSLLDADLMDHDSALFSDLPFLI PSPLNIFLHLAEFILMRSKDFVVGSSLRVSWQPPNGGDLKFIVDSLARGKPDLTSCGG ILRNLEGYVVGVFFDPLVYLNSNFVELIAIFYALRLFALSPYIGFNVCNTP" mobile_element complement(6405167..6406089) /note="source:CACAO_Again_on_E73_scaffold_3 4 945" /mobile_element_type="transposon:TIR/hAT" gene 6408276..6410991 /locus_tag="TCM_027708" /note="dbxref CacaoGD:Thecc1EG027708" mRNA join(6408276..6409687,6410132..6410991) /locus_tag="TCM_027708" /product="Cytochrome P450, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g36780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024852t1" /inference="similar to AA sequence:Phytozome:Glyma12g36780.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1923t3" CDS join(6408731..6409687,6410132..6410758) /locus_tag="TCM_027708" /note="paralog of Thecc1EG024852t1" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY26245.1" /db_xref="Phytozome:Glyma12g36780.1" /db_xref="TAIR:AT1G50520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GFR5" /translation="MTVTPPWNLGKDCKMNSISDLHYYLLCFLLLLFSAFLLRSISNK SSKSAPGRHLPPSPPSLPIIGHLHHVRPVLHKSFHHLSSKYGPLLYLRLGSYPCLVVS TSSMAEEIFKTQDVNFAARPVSPFGDGLLFGNDGFITAMYGDYWRFMKKLCVTELLGT RQVERSRAVRHQEITRFLRQMIQSASNTEVVDVGARLMKLTNNIICRMVMSTSCSEED DEAERIRELVKRSFELAGKMSLANSLGPLKKFGFWLYAKEAKEVTTRYDELLEKLLKE HEERAKSNDREGNKDLMDILLEAYHDDEAEFRITLGQLKSFILDLFIGGTSTSAETMQ WAVAELINHPTVYKIARDEIESVVGRSRLVEETDIPSLHYLQAIVKETLRLHPNSPLI PRVCHQGCKINGFDIPARTPVALNVYSIARDPAIWENPNEFCPERFLVSSKTETKGQN FDFTPFGGGRRACPGKNLAYAVMNTAIASMIQCIDWKVIGEDGDGAKLSMQEAIGMSL TMASPLRCLPLVYFNPFEA" mobile_element complement(6410834..6411166) /note="source:CACAO_M_E14113_F106_scaffold_3 1726 2055" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6411169..6412504) /note="source:CACAO_M_E24592_F195_scaffold_4 1 1328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6412836..6413574 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3742 4455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6413575..6414762 /note="source:CACAO_M_E34871_F106_scaffold_5 330 1529" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6414764..6415927 /note="source:CACAO_M_S_E67270_F14_scaffold_6 1 1164" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6415928..6416983) /note="source:CACAO_M_E42343_F106_scaffold_5 11530 12574" /mobile_element_type="retrotransposon:LTR/Copia" gene 6416777..6425484 /locus_tag="TCM_027709" /note="dbxref CacaoGD:Thecc1EG027709" mRNA join(6416777..6416846,6423577..6424042,6424172..6424288, 6424371..6425484) /locus_tag="TCM_027709" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(6416798..6416846,6423577..6424042,6424172..6424288, 6424371..6424497) /locus_tag="TCM_027709" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26246.1" /translation="MCHSMLCYLASSFFFLGLEDSEPVKHIDRIYTYVMGKKIVVTQH TLDFVLDFDIHQGNLGYVKGILPNEVLSTMYTYSPTSEKNITSVKQLSFYHRILHHVM SHTLCPHGINYSTIKSEDFWFLYCIKSNHHVNLAKFILDDMLKIINKSDKTFLYGMAI NAIIDSKGINTRDEGNDDTFAEPSATFSASSSVHRSVDLSFLPMSIAFNKKIRSYFTT NSCLRSNFELTFHHPFKLLTWDITYSKLLLYSLD" mobile_element 6416989..6417389 /note="source:CACAO_M_S_E146236_F17_scaffold_12 1079 1464" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6417361..6419535 /note="source:INTACT904F_F49_scaffold_6-int 5687 7887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6417390..6419277) /note="source:CACAO_M_S_E86211_F313_scaffold_7 1107 3010" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6419335..6420558 /note="source:CACAO_Again_on_E84_scaffold_3 2330 3620" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(6420481..6420574) /note="source:CACAO_M_E14537_F4_scaffold_3 5384 5472" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6420559..6420591 /note="source:CACAO_M_S_E146236_F17_scaffold_12 1460 1492" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6420590..6422263) /note="source:INTACT261_F189_scaffold_2-int 4000 5680" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6422755..6422816) /note="source:INTACT261_F189_scaffold_2-int 3427 3490" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(6437620..6463449) /locus_tag="TCM_046828" /note="dbxref CacaoGD:Thecc1EG046828" mRNA complement(join(6437620..6438107,6438550..6438633, 6446067..6446147,6447872..6448049,6448244..6448387, 6448485..6448531,6449601..6449657,6450702..6450800, 6450883..6451005,6451084..6451206,6451412..6451525, 6451761..6451949,6459587..6459753,6461493..6461577, 6461690..6461884,6462188..6462277,6462582..6462767, 6463186..6463449)) /locus_tag="TCM_046828" /product="Cycloartenol synthase 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029525001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036191t4" /inference="similar to AA sequence:Phytozome:POPTR_0007s15200.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2153t4" CDS complement(join(6437994..6438107,6438550..6438633, 6446067..6446147,6447872..6448049,6448244..6448387, 6448485..6448531,6449601..6449657,6450702..6450800, 6450883..6451005,6451084..6451206,6451412..6451525, 6451761..6451949,6459587..6459753,6461493..6461577, 6461690..6461884,6462188..6462277,6462582..6462767, 6463186..6463395)) /locus_tag="TCM_046828" /note="paralog of Thecc1EG036191t4" /codon_start=1 /product="Cycloartenol synthase 1" /protein_id="EOY26247.1" /db_xref="Phytozome:POPTR_0007s15200.1" /db_xref="TAIR:AT2G07050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P38605" /translation="MWRLKIGKESVGDNGAWLRSSNDHVGRQVWEFCPESGTPEELSK VEMARQSFSTDRLLKKHSSDLLMRIQYAKENQFVTNFPQVKLKEFEDVKEEATLTTLR RALNFYSTIQADDGHWPGDYGGPMFLLPGLVITLSVTGALNAVLSKEHQYEMCRYLYN HQNRDGGWGLHIEGPSTMFGTVLNYVTLRLLGEGPEGGQGAVEKACEWILEHGSATAI TSWGKMWLSVLGAYEWSGNNPLPPEVWLCPYFLPIHPGRMWCHCRMVYLPMSYLYGKR FVGPITPIILSLRKELYAVPYHEVDWNKARNTCAKEDLYYPHPLVQDILWASLHYLYE PIFTRWPCKSLREKALRTVMQHIHYEDENTRYICIGPVNKVLNMLSCWVEDPYSESFK LHLPRILDYLWIAEDGMKMQGYNGSQLWDTAFAVQAIISTGLADEYGPILRKAHDFIK YSQVLEDCPGDLNFWYRHISKGAWPFSTVDHGWPISDCTSEGLKAVLLLSTLPSESVG EPLHMMRLYDAVNVILSLQNVDGGFPTYELTRSYQWLELINPAETFGDIVIDYPYVEC TSAAIQALISFKKLFPEHRMEEIENCIGRAVEFIEKIQAADGSWYGSWGVCFTYAGWF GIKGLSAAGRTYNNSSNIRKACDFLLSKELATGGWGESYLSCQNKVYTNLEGARPHIV NTSWALLALIEAGQAERDPTPLHRAARILINSQMEDGDFPQEEIMGVFNKNCMISYSA YRNIFPIWALGEYTCRVLRAP" mobile_element 6439835..6440584 /note="source:INTACT123_F40_scaffold_10-int 1 716" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6442333..6442506 /note="source:CACAO_M_E42514_F40_scaffold_5 720 893" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6442504..6445889) /note="source:CACAO_M_S_E66869_F40_scaffold_6 1 3432" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6452182..6455560 /note="source:CACAO_M_E44747_F1_scaffold_6 1 5392" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6452531..6457556) /locus_tag="TCM_046829" /note="dbxref CacaoGD:Thecc1EG046829" mRNA complement(join(6452531..6453196,6453350..6453951, 6454525..6455282,6457450..6457556)) /locus_tag="TCM_046829" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene33098.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035725t1" /inference="similar to AA sequence:Phytozome:Glyma05g08780.1" /note="quality class is strong-expertchoice, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage; weak similarity to DNA/RNA polymerases superfamily protein; inference alignment:Velvet:11:TSA:cacao3v3sc8Loc523t3_G2" CDS complement(join(6452583..6453196,6453350..6453951, 6454525..6455282,6457450..6457494)) /locus_tag="TCM_046829" /note="paralog of Thecc1EG035725t1; weak similarity to DNA/RNA polymerases superfamily protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26248.1" /db_xref="Phytozome:Glyma05g08780.1" /db_xref="TAIR:ATMG00860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BU14" /translation="MVGRARGRGRGNQPQRAEVQRQVEELLEKGLVRESKSPCACPAL LAPKKDGSWRMCVDSRAINKITIKYRFPIPRLDEMLDQLVGSRVFSKIDLKSGYHQIR MRDGDEWKTAFKTPDGLFEWLVMPFGLSNAPSTFMRVMAEVLKPFLNSFVVVYFDDIL IYSHTKEKHLKHLRQVLEVLQKEQLYINLKKCSFMQPEVVFLGFIVSAEGLKPDPEKI RAISEWPAPTSIKEVRSFHGLASFYRRFIRNFSSIMSPITESLKKDGFEWLHEDYLFK GNQLCIPEGSLREQIIRELHGNGLGGHFGRDKTLAMVADRYYWPKMRRDVERLVKRCP ACLFGKGSAQNTGLYVPLPEPDAPWIHLSMDFVLGLPKTAKGFDSIFVVVDRFSKMAH FIPCFRTSDATHIAELFFREIVRLHGIPTSIVSDRDVKFMGHFWRTLWRKFGTELKYS STCHPQTDGQTEVVNRSLDLVPLPQEARVSNEGELFADHIRKIHEEVKAALKASNAEY SFTANQHRRKQEFEEGDQVLVHLRQERFPKGTYHKLKSRKFGPCKVLKKISSNAYLIE LPPELQISPIFNILDLYPFDGCDGTASTIDAQIQHLPIAKVEVIEDVLDVKEVRSRRG NPYRRFLVKWLGKPADESTWIAEEELKRVDPDIYEEYVKAYSSESSLF" mobile_element 6455693..6457886 /note="source:CACAO_M_E44747_F1_scaffold_6 3327 5520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6467343..6470657) /note="source:INTACT561_F253_scaffold_5-int 1387 4234" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6470662..6470717 /note="source:CACAO_M_S_E50888_F253_scaffold_4 3803 3858" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6471382..6471500 /note="source:CACAO_M_E72142_F322_scaffold_10 657 784" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6472191..6475119 /note="source:CACAO_M_E44750_F273_scaffold_6 1 2929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6482421..6483447) /note="source:CACAO_M_E3326_F17_scaffold_1 13835 14865" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6483464..6483750) /note="source:CACAO_M_S_E146236_F17_scaffold_12 7439 7726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6483788..6486440 /note="source:CACAO_M_S_E67283_F319_scaffold_6 1 2920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6490095..6493785 /note="source:INTACT271_F62_scaffold_5-int 59 3770" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6493777..6494322) /note="source:INTACT641_F282_scaffold_1-int 6849 7364" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6495218..6504593) /note="source:INTACT61_F128_scaffold_2-int 1 11682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6504594..6505450 /note="source:INTACT157_F155_scaffold_1-int 10807 11678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6504938..6505622) /note="source:CACAO_M_E12044_F76_scaffold_2 6512 7196" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6506494..6506695) /note="source:INTACT458_F219_scaffold_7-int 14984 16560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6506696..6508076) /note="source:CACAO_M_E34142_F67_scaffold_4 3704 5117" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6508077..6509378 /note="source:INTACT710_F62_scaffold_3-int 5446 6739" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6509185..6509709) /note="source:INTACT362_F205_scaffold_1-int 1 560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6510233..6511902) /note="source:CACAO_M_E947_F1_scaffold_1 3649 5311" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6514689..6518863) /locus_tag="TCM_027716" /note="dbxref CacaoGD:Thecc1EG027716" mRNA complement(join(6514689..6514990,6515971..6517613, 6517705..6517903,6518631..6518863)) /locus_tag="TCM_027716" /product="Pentatricopeptide repeat-containing protein, putative" /inference="alignment:exonerate-protein:2:frave:gene00271" /inference="similar to AA sequence:Phytozome:GSVIVT01012782001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1989t1" CDS complement(6515979..6517517) /locus_tag="TCM_027716" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative" /protein_id="EOY26249.1" /db_xref="Phytozome:GSVIVT01012782001" /db_xref="TAIR:AT3G61360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SYF1" /translation="MLLLLKMKGSSQLIQIPKANLSLFLSVASKSSSSSPLSSEIKTE IERITRIINDHPFPDEPLQPTLLQQIPRIALSVSFVESVLGRLFAAHSNGLKALEFFK YSVHYSQLTPSVDAFEKTLHILTRMRYFDKAWELMIEMGHTHPYLLTLKSMSIMLAKI AKFQSYEDTLKAFKRMETDVFVGRNFSTDEFNVLLRAFCSQREMKEARSVFQKMHSRF SPDTKTMNILLLGFKESGNVAAMELFFHDMVRRGFKPNSMTYNIRIDAYCKKGCLGDG LRLLEEMEQVHCLPTLETITTLIHGAGVARNMPKAKQLFDEIPKRNLQPDVGAYNALI SSLIRSRDIKSAIELMDEMERKQIEHDGLTYHTMFLGMMKLSGIEGVCELYYKMTERN FIPKTPTVVMLMKYFCENQNLDLGLNLWDYLVEKGYCPHSHALDLLVTGLCSRGRLPE AFVCCKQMLERGRHMSESVYRMMQRFLKQYDEMDKLMDLDRMIMKLQSVLPSSRGQAI GSTC" mobile_element 6520315..6523259 /note="source:CACAO_M_E57385_F197_scaffold_9 1800 4723" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6524407..6524524 /note="source:CACAO_on_E279_scaffold_9 6 123" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 6524602..6524985 /note="source:CACAO_on_E279_scaffold_9 8049 8440" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(6526499..6529133) /locus_tag="TCM_027717" /note="dbxref CacaoGD:Thecc1EG027717" mRNA complement(join(6526499..6528412,6528488..6528724, 6528815..6529133)) /locus_tag="TCM_027717" /product="Pectin lyase-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029528001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006007t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029528001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1991t2" CDS complement(join(6527411..6528412,6528488..6528724, 6528815..6529012)) /locus_tag="TCM_027717" /note="paralog of Thecc1EG006007t1" /codon_start=1 /product="Pectin lyase-like superfamily protein, putative" /protein_id="EOY26250.1" /db_xref="Phytozome:GSVIVT01029528001" /db_xref="TAIR:AT4G20050.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O49432" /translation="MVSKKTMLANLLLAFVSVNTVLDYGESSYSGISNYHANIRRMAS VKASFISRNGVPPISHSFSTTPVLTGSRVYHATDYGADPSGKLDSTDALEQAISDAFR SQVEGHLIQGVADLGGAQLHLDGGTFKISRPLRLPKIRGGNFMILCGSLTASPDFPTD RHLIELLPSSSSFSYEDVTLKDLMIDSNFRGGGIAIVNSLRTIIDNCYISHFVTNGIL IQGGHETYVRNTFIGQHINAGGDRREKDFSGIGINIKSNDNAVTDVVIFSASIGILIQ GQANMLTGIHCYNKATGWGGTGIYIQAPGFTQTRIANSYFDFTGIVAEDPVQLHITGS FFLGNAFVLLKSLKGVAFGINIVDNMFSGDYTGVPTVQLDQSNSPFTKIEQVVVDRNN ARGMVLKSTVARGSIWRNGTTWTVDFSRALLFPNLIKHVQYTLHAGASFPRHILRNAS GNRVTVETELPTSATLHVAVDQSTVGYT" mobile_element 6536649..6540772 /note="source:scaffold_6_CACTA_0705 1 4124" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6544505..6548993) /note="source:CACAO_M_E12058_F3_scaffold_2 1704 6185" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6548207..6549163 /note="source:CACAO_M_S_E4413_F3_scaffold_1 16145 17094" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6549221..6549304 /note="source:CACAO_M_S_E4413_F3_scaffold_1 215 297" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6550041..6551442 /note="source:CACAO_M_S_E4413_F3_scaffold_1 17166 18561" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6552165..6555356 /locus_tag="TCM_027719" /note="dbxref CacaoGD:Thecc1EG027719" mRNA join(6552165..6553212,6553315..6553962,6554342..6555356) /locus_tag="TCM_027719" /product="Leucine-rich repeat protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400016225" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039777t1" /inference="similar to AA sequence:Phytozome:POPTR_0014s00380.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1949t1" CDS join(6552531..6553212,6553315..6553962,6554342..6555009) /locus_tag="TCM_027719" /note="paralog of Thecc1EG039777t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative" /protein_id="EOY26251.1" /db_xref="Phytozome:POPTR_0014s00380.1" /db_xref="TAIR:AT3G20190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LPT1" /translation="MLMGAHIARLVRTPNPSLALALVSLLSLVAISYGDTDMETLLTF KDSLANPSALSNWNASISPCHKDRANWIGVLCLNNTIWGLQLENMGLAGLVNIEILAA LPNLRTISLMNNNFEGTMPDIRKLGALKALYLSNNRFAGQIPNDAFKGMRSLKKVFLA NNAFTGTIPLSLTTLPKLVILRLEGNQFVGQIPDFKHKSVKVVNLASNQLEGPIPASL SKMGASMFSGNRNLCGQPLQSCTFTSPPPSPSPKPSASPQTVLSSLDKEISALKIALI VVSIMLLVVIIAAIIFIIPQKKQKSKILEATDLDDSNKLPAYDEGEKKVSEGGGAMKR SDHGKLIFLKDDLEAFDLQDLLRASAEVLGSGNFGASYKAGILNGEAVVVKRYKQMNN VGREDFHEHMRRLGRLNHQNLLPLVAYYYRREEKLLISEFMENGSLASHLHANHSLDQ PGLDWPTRLKIIKGVARGLIYLYNELPTLVVPHGHLKSSNVLLDKDLEPLLSDYALRP VINQEQAHMVMTAYKSPEHAINGRISRKTDVWCLGILILEVLTGRFPENYLTPGYDSN TNLATWVNEMVKEKKSSEVFDKEMAGTKNSKGEMINLLKIGLSCCEEDFETRPELKEV VQKIEQLKEGDDEDFSSTIGEVNAVIFRGNMEDESYFSLNR" mobile_element 6558380..6561384 /note="source:CACAO_M_E44761_F277_scaffold_6 1 3005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6569372..6569936) /note="source:INTACT242_F12_scaffold_1-int 3987 4549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6570162..6570560) /note="source:INTACT88_F12_scaffold_4-int 12720 13127" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6570740..6571133 /note="source:CACAO_M_E11662_F12_scaffold_2 6373 6752" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6571171..6571303) /note="source:CACAO_M_E35674_F13_scaffold_5 7287 7419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6571712..6572024) /note="source:INTACT242_F12_scaffold_1-int 2069 2391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6572388..6572511) /note="source:INTACT242_F12_scaffold_1-int 1778 1900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6579985..6580062 /note="source:CACAO_M_S_E64832_F14_scaffold_5 12600 12677" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6582762..6585716 /note="source:CACAO_M_E44762_F33_scaffold_6 1 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6586911..6587043 /note="source:scaffold_8_CACTA_0858 13799 13939" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6590305..6591095) /note="source:CACAO_M_E13604_F90_scaffold_3 10287 11160" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6591093..6591526) /note="source:CACAO_M_E13604_F90_scaffold_3 8600 9034" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6591666..6591788) /note="source:CACAO_M_E9571_F13_scaffold_2 9769 9900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6596116..6596161 /note="source:INTACT28_F14_scaffold_3-int 9034 9081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6598591..6599682 /note="source:INTACT610_F272_scaffold_5-int 14779 15867" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6598597..6600204 /note="source:INTACT236_F12_scaffold_10-int 3 1581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6598759..6606593) /note="source:CACAO_M_E12537_F13_scaffold_3 2238 10091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6606580..6608761) /note="source:INTACT242_F12_scaffold_1-int 2423 4549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6609334..6610312) /note="source:CACAO_M_E49857_F85_scaffold_7 20330 21045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6610294..6611719) /note="source:INTACT762_F78_scaffold_4-int 4248 5672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6610618..6612914 /note="source:CACAO_M_E8481_F245_scaffold_2 5435 7364" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6612677..6614871) /note="source:INTACT242_F12_scaffold_1-int 2446 4548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6615424..6616054) /note="source:INTACT88_F12_scaffold_4-int 10273 10888" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6616048..6618240 /note="source:INTACT610_F272_scaffold_5-int 13676 15867" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6618527..6619705) /note="source:CACAO_M_S_E119615_F3_scaffold_9 17850 19009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6619705..6619763) /note="source:INTACT607_F3_scaffold_4-int 13216 13274" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6619760..6620296) /note="source:CACAO_M_S_E119615_F3_scaffold_9 17329 17848" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6625765..6642526 /locus_tag="TCM_027725" /note="dbxref CacaoGD:Thecc1EG027725" mRNA join(6625765..6625882,6626057..6626678,6626837..6626946, 6627065..6627186,6627996..6628201,6628290..6628335, 6628718..6629009,6629486..6629587,6629671..6630099, 6630443..6631204,6631333..6631672,6642304..6642526) /locus_tag="TCM_027725" /product="Kinase protein with adenine nucleotide alpha hydrolases-like domain, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006608" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036746t1" /inference="similar to AA sequence:ricco:30169.m006608" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1958t2" mRNA join(6625765..6625882,6626057..6626678,6626837..6626946, 6627065..6627186,6627996..6628201,6628290..6628335, 6628718..6629009,6629486..6629593,6629671..6630099, 6630443..6631204,6631333..6631698) /locus_tag="TCM_027725" /product="Kinase protein with adenine nucleotide alpha hydrolases-like domain, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006608" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036746t1" /inference="similar to AA sequence:ricco:30169.m006608" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b026817t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1958t2" CDS join(6626486..6626678,6626837..6626946,6627065..6627186, 6627996..6628201,6628290..6628335,6628718..6629009, 6629486..6629593,6629671..6630099,6630443..6631204, 6631333..6631410) /locus_tag="TCM_027725" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006608; paralog of Thecc1EG036746t1" /codon_start=1 /product="Kinase protein with adenine nucleotide alpha hydrolases-like domain, putative isoform 2" /protein_id="EOY26253.1" /db_xref="TAIR:AT1G16760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HG77" /translation="MWTPNRYASSAKKGVGNGLVAVAIDKDKGSQHALRWAVENLLSR GQTVILIHVVNKAASVTHVASTAVVCDINLPLSNKQMAEKLSKDLFLTFHCYCTRKDI HCLDIILEDTDIVKALTEYVSYAAIEKLVLGAPARSGFMRKFRADIPSCVSKLSPDFC TVYVISKGKVSSVRNASRSAPHSSPLLDEIKKQNTDSVDKPFLHSGSVKGADRMVKPR TSVDRASRSPYPGARPSLMKAFGDFSESDTDISFVSSERPSTDRNSSVFFDSFVDSSR NSRISSSTDHSIGSMRLGIKWSDRTTPHEFSSVSQESGRSSCSSQNLEEVEAEMRRLR LELKQTMDLYSNACREALSAKQQVQAMELNRCKHQEEQRLEEARLAEEAAMSAAEKER VKCQEAVQAAEAAQKVAESESLRRLKIDGETLRETVEMKKMLDTLSRSNIKYRRYSIE EIEQATDGFACSRKIGEGGYGPVYKCYLDHTSVAVKVLRPDAAQGRLQFLQEIEVLSC IRHPNMVLLLGACPEYGILVYEYMGKGSLDDCIFRRANTPAMSWQLRFRIAAEIATGL LFLHQTKPEPIVHRDLKPGNILLDHNYVSKISDVGLARLVPAVAENVTQFRVTSTAGT FCYIDPEYQQTGMLGVKSDVYSLGILLLQLITAKPPMGLTHYVERAIEKGTFFTEMLD PAVTDWPAEETLSLAKLALQCAELRRKDRPDLGKEVLPELCRLRDIAEEKMNHFFFAH SAGPSPNHSQVSSISQEAKSDAYQVENSTSSKTEEEKSDKD" CDS join(6626486..6626678,6626837..6626946,6627065..6627186, 6627996..6628201,6628290..6628335,6628718..6629009, 6629486..6629587,6629671..6630099,6630443..6631204, 6631333..6631410) /locus_tag="TCM_027725" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006608; paralog of Thecc1EG036746t1" /codon_start=1 /product="Kinase protein with adenine nucleotide alpha hydrolases-like domain, putative isoform 1" /protein_id="EOY26252.1" /db_xref="TAIR:AT1G16760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HG77" /translation="MWTPNRYASSAKKGVGNGLVAVAIDKDKGSQHALRWAVENLLSR GQTVILIHVVNKAASVTHVASTAVVCDINLPLSNKQMAEKLSKDLFLTFHCYCTRKDI HCLDIILEDTDIVKALTEYVSYAAIEKLVLGAPARSGFMRKFRADIPSCVSKLSPDFC TVYVISKGKVSSVRNASRSAPHSSPLLDEIKKQNTDSVDKPFLHSGSVKGADRMVKPR TSVDRASRSPYPGARPSLMKAFGDFSESDTDISFVSSERPSTDRNSSVFFDSFVDSSR NSRISSSTDHSIGSMRLGIKWSDRTTPHEFSSVSQESGRSSCSSQNLEEVEAEMRRLR LELKQTMDLYSNACREALSAKQQAMELNRCKHQEEQRLEEARLAEEAAMSAAEKERVK CQEAVQAAEAAQKVAESESLRRLKIDGETLRETVEMKKMLDTLSRSNIKYRRYSIEEI EQATDGFACSRKIGEGGYGPVYKCYLDHTSVAVKVLRPDAAQGRLQFLQEIEVLSCIR HPNMVLLLGACPEYGILVYEYMGKGSLDDCIFRRANTPAMSWQLRFRIAAEIATGLLF LHQTKPEPIVHRDLKPGNILLDHNYVSKISDVGLARLVPAVAENVTQFRVTSTAGTFC YIDPEYQQTGMLGVKSDVYSLGILLLQLITAKPPMGLTHYVERAIEKGTFFTEMLDPA VTDWPAEETLSLAKLALQCAELRRKDRPDLGKEVLPELCRLRDIAEEKMNHFFFAHSA GPSPNHSQVSSISQEAKSDAYQVENSTSSKTEEEKSDKD" mobile_element 6637357..6639642 /note="source:CACAO_on_E181_scaffold_6 1 2286" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 6642560..6642609 /note="source:CACAO_M_E49559_F88_scaffold_7 7626 7675" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6644695..6647368) /note="source:CACAO_M_E10603_F306_scaffold_2 5067 7769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6647315..6647377 /note="source:CACAO_M_E84942_F33_scaffold_10 2512 2572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6647372..6649390 /note="source:scaffold_2_CACTA_0269 3309 5335" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6653730..6654561 /note="source:CACAO_M_E14081_F316_scaffold_3 1 832" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6654562..6655258 /note="source:CACAO_M_E44766_F33_scaffold_6 1 697" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6655505..6657515 /note="source:CACAO_M_E44766_F33_scaffold_6 698 2708" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6657516..6662186 /note="source:CACAO_M_E4368_F316_scaffold_2 766 5465" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6662187..6662216) /note="source:CACAO_M_E153_F88_scaffold_1 5238 5256" /mobile_element_type="retrotransposon:LTR/Copia" gene 6662524..6665488 /locus_tag="TCM_027726" /note="dbxref CacaoGD:Thecc1EG027726" mRNA join(6662524..6662903,6663063..6663291,6664617..6665488) /locus_tag="TCM_027726" /product="F17F16.3 protein" /inference="alignment:exonerate- protein:2:ricco:30169.m006609" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400042517" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g1960t1" CDS join(6662602..6662903,6663063..6663291,6664617..6665117) /locus_tag="TCM_027726" /codon_start=1 /product="F17F16.3 protein" /protein_id="EOY26254.1" /db_xref="Phytozome:PGSC0003DMP400042517" /db_xref="TAIR:AT1G16770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FWR1" /translation="MCEETWQPTVRWCMSEGNVAREGSFWLLQLRRVSSCSSQSGKFS HWISSSTVSFLFKTTDKSSGDFASFWSVLSGRRRQRRMKWDKAENTRPEMMPKLRFRK EGKYSSSIGLKSTSRKLTELTMRSGCTLSCAQSPVRDLLKRSKTPSLARTVPRRNQIK VKVGRAKNEYEGGKGRQEYDTSTRGHRRNFPARAVGEGVYRILRHNSGKKKMHTHLIY KIEFPPEDEENEPQESLNIKREGSFVIQIKNPEQPGKSQFRGLQKKRKAAFPAHLQGQ LGQNRYHPADPPDFLNYEGCEFLLISTRSWVWNLRPKGKQIHLVQIWSGLSGRLHLQL PFSRAFGLE" gene 6665310..6673290 /locus_tag="TCM_027727" /note="dbxref CacaoGD:Thecc1EG027727" mRNA join(6665310..6665447,6667040..6668075,6669292..6669429, 6669616..6669858,6670032..6670145,6670800..6670982, 6671835..6672081,6672274..6672319,6672626..6673196) /locus_tag="TCM_027727" /product="Mitochondrial transcription termination factor family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s15240.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029533001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05106t00001" mRNA join(6667093..6667205,6667494..6668075,6669292..6669429, 6669616..6669858,6670032..6670145,6670800..6670982, 6671835..6672052,6672626..6673290) /locus_tag="TCM_027727" /product="Mitochondrial transcription termination factor family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s15240.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029533001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2005t1; inference alignment:Newbler:10:TSA:cgbaB_g05106t00001" CDS join(6667548..6668075,6669292..6669429,6669616..6669858, 6670032..6670145,6670800..6670982,6671835..6672081, 6672274..6672319,6672626..6672962) /locus_tag="TCM_027727" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Mitochondrial transcription termination factor family protein, putative isoform 1" /protein_id="EOY26255.1" /db_xref="Phytozome:GSVIVT01029533001" /db_xref="TAIR:AT1G78930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64555" /translation="MSTKSFSTHWNLKSLFPNTCFLHFHRKSFPNALPFSFFQYPRIH CPKTYFPQPPLALSYPSDQTSHNLTQAQESVSEYLQDLGLSLEDSISIASNSPKYTQM LVDGVKELEEWNAWNNSNGEGDHLGFKEMVIYMAKEKGDNGKVAFLESVGLTLSSAMS VARYLSSESLPSLIHKVKYMKEIIFSGGDDKWLSGKNARRMMMYLSIPSDEDVEQTLS FFEKIEARRGGLDMLGSVDATFRFLLESFPRILLLPVESHLIPLVELLENIGVPRGSI GKVFLLFPPVLFCNVQGIKTKASAFEKVGAANKDVGKMLLKYPWILSTSIQNNYEHIL LFFEEEKIPKASVDRAIRSWPHILGCSISKLKLMVEQFGELDVRNKKLGRVIAKSPQL LLRKPQELLQFVLFLEGLGFDRETVGKLGCRCPEIFAANIDKTLKKKIEFLVELGISN HHLPWVIKKYPELLVSDVDKALRPRYCFYSLQLHYHTGNELDDPALIILRIQYLMEIG LSKREIALMVRRFSPLLGYSIEEVLRPKLKFLLDTMEKPVKDVVDYPRFFSYSLEKKI KPRFWVLKGRNMECSLKDMLGKNDEEFAAEFMGVGRMLISPSSHQ" CDS join(6667548..6668075,6669292..6669429,6669616..6669858, 6670032..6670145,6670800..6670982,6671835..6672052, 6672626..6672962) /locus_tag="TCM_027727" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Mitochondrial transcription termination factor family protein, putative isoform 2" /protein_id="EOY26256.1" /db_xref="Phytozome:GSVIVT01029533001" /db_xref="TAIR:AT1G78930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64555" /translation="MSTKSFSTHWNLKSLFPNTCFLHFHRKSFPNALPFSFFQYPRIH CPKTYFPQPPLALSYPSDQTSHNLTQAQESVSEYLQDLGLSLEDSISIASNSPKYTQM LVDGVKELEEWNAWNNSNGEGDHLGFKEMVIYMAKEKGDNGKVAFLESVGLTLSSAMS VARYLSSESLPSLIHKVKYMKEIIFSGGDDKWLSGKNARRMMMYLSIPSDEDVEQTLS FFEKIEARRGGLDMLGSVDATFRFLLESFPRILLLPVESHLIPLVELLENIGVPRGSI GKVFLLFPPVLFCNVQGIKTKASAFEKVGAANKDVGKMLLKYPWILSTSIQNNYEHIL LFFEEEKIPKASVDRAIRSWPHILGCSISKLKLMVEQFGELDVRNKKLGRVIAKSPQL LLRKPQELLQFVLFLEGLGFDRETVGKLGCRCPEIFAANIDKTLKKKIEFLVELGISN HHLPWVIKKYPELLVSDVDKALRPRIQYLMEIGLSKREIALMVRRFSPLLGYSIEEVL RPKLKFLLDTMEKPVKDVVDYPRFFSYSLEKKIKPRFWVLKGRNMECSLKDMLGKNDE EFAAEFMGVGRMLISPSSHQ" mobile_element 6683736..6684331 /note="source:scaffold_1_CACTA_0009 1620 2221" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6685312..6685660) /note="source:scaffold_1_CACTA_0009 12785 13292" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6685422..6687162) /note="source:CACAO_on_E193_scaffold_6 9320 11903" /mobile_element_type="transposon:TIR/Mutator" mobile_element 6687163..6688169 /note="source:scaffold_1_CACTA_0009 6361 7344" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6688026..6690172 /note="source:CACAO_on_S_E176_scaffold_5 2478 4431" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6688170..6688798) /note="source:CACAO_on_E193_scaffold_6 8384 9319" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6689799..6690777) /note="source:CACAO_on_E193_scaffold_6 3651 4662" /mobile_element_type="transposon:TIR/Mutator" mobile_element 6690530..6693141 /note="source:CACAO_on_S_E176_scaffold_5 4429 7053" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6693131..6694407) /note="source:CACAO_on_E193_scaffold_6 27 1304" /mobile_element_type="transposon:TIR/Mutator" mobile_element 6694268..6695024 /note="source:scaffold_1_CACTA_0009 13002 13835" /mobile_element_type="transposon:TIR/CACTA" gene complement(6696705..6701428) /locus_tag="TCM_027730" /note="dbxref CacaoGD:Thecc1EG027730" mRNA complement(join(6696705..6697072,6697401..6697915, 6699993..6700086,6700457..6700724,6700820..6701013, 6701231..6701428)) /locus_tag="TCM_027730" /product="Cytochrome P450-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027708t1" /inference="similar to AA sequence:Phytozome:Glyma12g36780.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS complement(join(6700024..6700086,6700457..6700724, 6700820..6701013,6701231..6701368)) /locus_tag="TCM_027730" /note="paralog of Thecc1EG027708t1" /codon_start=1 /product="Cytochrome P450-like protein" /protein_id="EOY26257.1" /db_xref="Phytozome:Glyma12g36780.1" /db_xref="TAIR:AT1G50520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HNL1" /translation="MLPPMAFVCFPYSVVHLQQTKKIKQHPTPSSKPTIPPNNRPSPP SQGDYWRFMKKLSVTELLGTRQIERSRTVRHQEIAMFLRKMIQSARKTEVVDVGAELM KLTNNVICRVVASTSCSEEDNEAKRIKELLERSAELIGKMSFANSLGPLKKFGFWLYR KEAKDLNARHDELMEKLLRKHEEKAENNGGDIDRDANKDFKSEELGEESLSLQADEGT GI" mobile_element 6702357..6705292 /note="source:CACAO_M_E44768_F281_scaffold_6 1 2936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6708959..6712076 /note="source:CACAO_M_E44769_F15_scaffold_6 1 3662" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6718529..6721363 /locus_tag="TCM_027732" /note="dbxref CacaoGD:Thecc1EG027732" mRNA join(6718529..6718845,6720400..6720500,6720722..6721363) /locus_tag="TCM_027732" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s15280.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029533001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Newbler:10:TSA:cgbaB_g16973t00001" CDS join(6718748..6718845,6720400..6720500,6720722..6721197) /locus_tag="TCM_027732" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26258.1" /db_xref="Phytozome:GSVIVT01029533001" /db_xref="TAIR:AT1G78922.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HG82" /translation="MGTVVSKAANGIGGVLGNVLAAPFKSVFGGSCEGICSGPWDAIC FIEHLCVSNLVKLLMILGLCFIILMFLYLLLKLGICQCIIRSLCKICWAGCETYWFAL EDATCFLWHKLKNTKRVNRYHRRRRFQDIEVGISSSSDNDYSDNYHHHHHHLSFSKRK NTERNRHRLHSNHPHHHHVKLKTSEVSVHLRASSRRLRSSRRLQLIKGRKPQKEVNIY KRRRMG" gene 6721717..6726217 /locus_tag="TCM_027733" /note="dbxref CacaoGD:Thecc1EG027733" mRNA join(6721717..6722027,6722150..6722205,6723329..6723564, 6723697..6723861,6723958..6724114,6724276..6724361, 6724452..6724651,6724802..6724850,6724923..6725141, 6725238..6725444,6725562..6726217) /locus_tag="TCM_027733" /product="Delta vacuolar processing enzyme, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s00410.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037257t1" /inference="similar to AA sequence:frave:gene02665" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06512t00001" CDS join(6721972..6722027,6722150..6722205,6723329..6723564, 6723697..6723861,6723958..6724114,6724276..6724361, 6724452..6724651,6724802..6724850,6724923..6725141, 6725238..6725444,6725562..6725714) /locus_tag="TCM_027733" /note="dbxref frave:gene02665; paralog of Thecc1EG037257t1" /codon_start=1 /product="Delta vacuolar processing enzyme, putative" /protein_id="EOY26259.1" /db_xref="TAIR:AT3G20210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HK19" /translation="MTEVSKLTKKELIPQTKQWTTPLPTSNPVSASTNSSRVLQVESK MIPCCLRLFLFLFLSIFAVESGRLNANSYNVVSRFSEFNHEDNVHPNVNGMEGKRWAI LIAGSRGYGNYRHQADVCHAYQILRNGGLEDDNIVVFMYDDIAFSVYNPRPGVIINKP NGEDVYKGVPKDYTGQDVNMNNFFAVILGNKTGLTGGSGKVVESGPNDRIFIYYTDHG SPGLLGMPSGDDLSAKDLINVLKKKHEAKSYKSMVLYVEACESGSMFEGILPNNLNIY AITAANAVENSWGTYCPEGYPSSPSEFDTCLGDLFSISWMEDSDIHDLRNETLEQQYQ VVRRRTAVDNLVVSSHVMQYGNMTLEKDVLFSYMGTNPANDNYKPTATAHPMNSPMSS KVVSQRDASLLHLWHKFHRAPEESAEKAEAHKRLLDELSHRKHIDRSINQIIAILFGH QNVSEMLKSVQSAGQPLVHDWNCFKMLVNAFKNYCGSTSRYDMKYSGAFANMCNAGVN MKQATATITQACSMHSPSS" gene 6728149..6728806 /locus_tag="TCM_027734" /note="dbxref CacaoGD:Thecc1EG027734" mRNA join(6728149..6728475,6728671..6728806) /locus_tag="TCM_027734" /product="To encode a PR protein, Belongs to the plant thionin family with the following members:, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028643t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(6728211..6728475,6728671..6728732) /locus_tag="TCM_027734" /note="paralog of Thecc1EG028643t1" /codon_start=1 /product="To encode a PR protein, Belongs to the plant thionin family with the following members:, putative" /protein_id="EOY26260.1" /translation="MGGRGVLMVCLVLGLLMGHSHSDTSFQICYCGCFVSCVITPGNN AFSCAINCLQECIFRNYLVEDTQYFCKLGCSTSKCTSLSSKENPAEANVGSCVDSCSD TCAVKN" mobile_element complement(6729959..6731803) /note="source:INTACT164_F159_scaffold_7-int 8511 10335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6732173..6732241 /note="source:scaffold_5_CACTA_0585 6318 6377" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6732345..6732420) /note="source:scaffold_5_CACTA_0585 6278 6360" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6734373..6735847) /note="source:INTACT164_F159_scaffold_7-int 7047 8515" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6737496..6738473) /note="source:scaffold_9_CACTA_0924 5161 6154" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6738470..6738639) /note="source:scaffold_9_CACTA_0924 5085 5255" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6738626..6739138 /note="source:INTACT522_F240_scaffold_3-int 5783 6295" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6739140..6740428) /note="source:INTACT512_F236_scaffold_5-int 1 1274" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6740431..6740529) /note="source:INTACT164_F159_scaffold_7-int 3905 4003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6740861..6740954) /note="source:CACAO_M_E4676_F9_scaffold_2 1320 1418" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6740862..6740937 /note="source:CACAO_M_E43816_F9_scaffold_5 1 76" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6740895..6740997) /note="source:scaffold_5_CACTA_0585 4765 4874" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6740932..6752773 /note="source:INTACT558_F9_scaffold_9-int 265 12012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6754189..6755193) /note="source:INTACT164_F159_scaffold_7-int 2732 3910" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6755846..6755949) /note="source:INTACT164_F159_scaffold_7-int 2634 2734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6756843..6756932 /note="source:INTACT714_F310_scaffold_9-int 10189 10279" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6756935..6757415) /note="source:INTACT714_F310_scaffold_9-int 10194 10640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6759095..6760024 /note="source:scaffold_4_CACTA_0511 12915 13814" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6762225..6762444) /note="source:INTACT164_F159_scaffold_7-int 2422 2638" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6762749..6764910) /note="source:CACAO_M_S_E64608_F12_scaffold_5 3169 5473" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6763525..6765145 /note="source:CACAO_M_S_E19254_F335_scaffold_3 932 2666" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6766074..6766187) /note="source:INTACT164_F159_scaffold_7-int 1246 1357" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6766803..6767048) /note="source:INTACT164_F159_scaffold_7-int 10079 10313" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6770824..6782999 /locus_tag="TCM_027736" /note="dbxref CacaoGD:Thecc1EG027736" mRNA join(6770824..6771382,6772989..6773364,6774338..6774541, 6775834..6775985,6776072..6776219,6776294..6776426, 6777521..6777693,6778433..6778553,6779183..6779370, 6779524..6779961,6780070..6780234,6780575..6780730, 6781140..6781251,6781857..6782076,6782552..6782999) /locus_tag="TCM_027736" /product="Inorganic H pyrophosphatase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029563001" /inference="similar to AA sequence:Phytozome:GSVIVT01029563001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:PASA:2:TSA:puevd3b026828t1a2; alternateUTRof:Thecc1EG027736t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2262t1" mRNA join(6770824..6771382,6772989..6773024,6773134..6773364, 6774338..6774541,6775834..6775985,6776072..6776219, 6776294..6776426,6777521..6777693,6778433..6778553, 6779183..6779370,6779524..6779961,6780070..6780234, 6780575..6780730,6781140..6781251,6781857..6782076, 6782552..6782984) /locus_tag="TCM_027736" /product="Inorganic H pyrophosphatase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029563001" /inference="similar to AA sequence:Phytozome:GSVIVT01029563001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2262t1" mobile_element 6771254..6771312 /note="source:CACAO_M_E23938_F233_scaffold_4 699 752" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(6773266..6773364,6774338..6774541,6775834..6775985, 6776072..6776219,6776294..6776426,6777521..6777693, 6778433..6778553,6779183..6779370,6779524..6779961, 6780070..6780234,6780575..6780730,6781140..6781251, 6781857..6782076,6782552..6782651) /locus_tag="TCM_027736" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Inorganic H pyrophosphatase family protein isoform 1" /protein_id="EOY26261.1" /db_xref="Phytozome:GSVIVT01029563001" /db_xref="TAIR:AT1G16780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FWR2" /translation="MMMGDDVENGNLGLYQDRPRTFPNMRSKPYTPLIFRVLMGINVR VLVILLLLGFGFVFYVGASTSPIIVFVFSVCIVSFLLSIYLTKWVLSKDEGPPEMSQI SDAIRDGAEGFFRTQYGTISKMALLLALVILSIYLFRSTTPQQESSGLGRATSAYITV AAFLLGALCSGVAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSALVVVGMA VIGIAILYATFYVWLGVDSPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAAD VGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGG TMAKRCKIEDPSGFILFPLVVHSFDLVVSSIGILSIRGTRDSSVKTPIEDPMTILQKG YSVTIVLAVLTFAGSTRWLLYTDQAPSAWLNFALCGLVGIITAYVFVWITKYYTDYKH EPVRTLALSSSTGHGTNIIAGVSLGLESTALPVLVISISIISAFWLGHTSGLVDETGS PTGGLFGTAVATMGMLSTAAYILTMDMFGPIADNAGGIVEMSQQPESVREITDVLDAV GNTTKATTKGFAIGSAALASFLLFSAYMDEVASFAHESFKQVDIAIPEVFIGGLLGSM LIFLFSAWACAAVGRTAQEVVKEVRRQFIERPGIMDYKEKPDYGRCVAIVASASLREM IKPGALAIVSPIVVGFLFRVLGHYTGHPLLGAKVVAALLMFATVSGILMALFLNTAGG AWDNAKKFIETGALGGKGSDSHKAAVTGDTVGDPFKDTAGPSLHVLIKMLATITLVMA PVFL" CDS join(6773266..6773364,6774338..6774541,6775834..6775985, 6776072..6776219,6776294..6776426,6777521..6777693, 6778433..6778553,6779183..6779370,6779524..6779961, 6780070..6780234,6780575..6780730,6781140..6781251, 6781857..6782076,6782552..6782651) /locus_tag="TCM_027736" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Inorganic H pyrophosphatase family protein isoform 1" /protein_id="EOY26262.1" /db_xref="Phytozome:GSVIVT01029563001" /db_xref="TAIR:AT1G16780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FWR2" /translation="MMMGDDVENGNLGLYQDRPRTFPNMRSKPYTPLIFRVLMGINVR VLVILLLLGFGFVFYVGASTSPIIVFVFSVCIVSFLLSIYLTKWVLSKDEGPPEMSQI SDAIRDGAEGFFRTQYGTISKMALLLALVILSIYLFRSTTPQQESSGLGRATSAYITV AAFLLGALCSGVAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSALVVVGMA VIGIAILYATFYVWLGVDSPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAAD VGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGG TMAKRCKIEDPSGFILFPLVVHSFDLVVSSIGILSIRGTRDSSVKTPIEDPMTILQKG YSVTIVLAVLTFAGSTRWLLYTDQAPSAWLNFALCGLVGIITAYVFVWITKYYTDYKH EPVRTLALSSSTGHGTNIIAGVSLGLESTALPVLVISISIISAFWLGHTSGLVDETGS PTGGLFGTAVATMGMLSTAAYILTMDMFGPIADNAGGIVEMSQQPESVREITDVLDAV GNTTKATTKGFAIGSAALASFLLFSAYMDEVASFAHESFKQVDIAIPEVFIGGLLGSM LIFLFSAWACAAVGRTAQEVVKEVRRQFIERPGIMDYKEKPDYGRCVAIVASASLREM IKPGALAIVSPIVVGFLFRVLGHYTGHPLLGAKVVAALLMFATVSGILMALFLNTAGG AWDNAKKFIETGALGGKGSDSHKAAVTGDTVGDPFKDTAGPSLHVLIKMLATITLVMA PVFL" gene 6783586..6784211 /locus_tag="TCM_027738" /note="dbxref CacaoGD:Thecc1EG027738" mRNA 6783586..6784211 /locus_tag="TCM_027738" /product="Ribosomal protein-related, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s26060.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s26060.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13514t00001" CDS 6783748..6784185 /locus_tag="TCM_027738" /codon_start=1 /product="Ribosomal protein-related, putative" /protein_id="EOY26263.1" /db_xref="Phytozome:POPTR_0010s26060.1" /db_xref="TAIR:AT1G16790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HV08" /translation="MEQPATPTVVPGKDKENNNKAKKKIPTPQELISHYQTQGLDSQQ ASIKVIEDLQNVVMRVVSSNSKSKKDNKFLIDTSRKIDSVNSRLAVVDMKLDSKPGYL ETLAIGIASGAALNGIGSVLPHVFEGFAQIWSSVRTATKPSSP" mobile_element complement(6785692..6785851) /note="source:scaffold_5_CACTA_0611 22 181" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6785710..6786142 /note="source:scaffold_6_CACTA_0700 7155 7613" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6785948..6786243) /note="source:scaffold_9_CACTA_0941 1137 1455" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6786182..6786906 /note="source:scaffold_6_CACTA_0700 9993 10701" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6787611..6787805 /note="source:CACAO_M_E48538_F49_scaffold_6 12213 12404" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6787804..6790623 /locus_tag="TCM_027739" /note="dbxref CacaoGD:Thecc1EG027739" mRNA join(6787804..6787892,6788863..6790623) /locus_tag="TCM_027739" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s26050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027742t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s26050.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2086t1" CDS 6789094..6790239 /locus_tag="TCM_027739" /note="paralog of Thecc1EG027742t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY26264.1" /db_xref="Phytozome:POPTR_0010s26050.1" /db_xref="TAIR:AT5G07610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HV09" /translation="MGSRNASELNLISDNDVMIDILQRLPLKTLMRCKCVCKWWNNLI SDPTFKSSYSRRNPQYYVSGFFLQKFLFLELHSKLLFFPCEGHIDAAPEPSLSFIEDD KGVRIQHSCNGLLLCSSFRCLEKDRQFYICKPTTKQYLRLPYPVCRIVFGSNIAYDPS KSPHYKIVCICDSYLSENHRQIKIFSPFTGSWKVSGNPFSVLDEVMLFNRGIFFNGML HWVGRGNLALRFDVEREVMLTMPMPPIQEGWTERRVRYFGESGGLLFLIETYGPLTAG IDVKEMKSDYSGWFVKYHLNLDTVAFHSPGIRINYTLAILHIAHQRVGDEDESFMVIH VPGDLVSFKLKDNTLMELQTSNQVNKALGLWYSWEGVYPYSNTYCYL" mobile_element 6793143..6796089 /note="source:CACAO_M_S_E67307_F172_scaffold_6 1 2947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6799231..6802173 /note="source:scaffold_5_CACTA_0591 10915 13825" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6802330..6802505 /note="source:INTACT261_F189_scaffold_2-int 215 368" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6803681..6803800) /note="source:INTACT1818F_F49_scaffold_11-int 19934 20065" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6810960..6811025 /note="source:scaffold_1_CACTA_0009 1610 1678" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6810978..6811038) /note="source:CACAO_M_E33977_F20_scaffold_4 16483 16543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6811039..6812783 /note="source:CACAO_Mutator_E1888_scaffold_9 3167 4933" /mobile_element_type="transposon:TIR/Mutator" mobile_element 6812780..6815369 /note="source:CACAO_Mutator_E1410_scaffold_6 5250 7869" /mobile_element_type="transposon:TIR/Mutator" mobile_element 6817749..6819252 /note="source:scaffold_6_CACTA_0706 1 1504" /mobile_element_type="transposon:TIR/CACTA" gene 6818206..6822096 /locus_tag="TCM_027742" /note="dbxref CacaoGD:Thecc1EG027742" mRNA join(6818206..6818403,6820646..6822096) /locus_tag="TCM_027742" /product="F-box family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene27983" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027739t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s26050.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage" mobile_element 6819353..6820000 /note="source:scaffold_6_CACTA_0706 1505 2152" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6820015..6820118 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3184 3287" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6820029..6820129) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3187 3287" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6820047..6820148) /note="source:scaffold_6_CACTA_0706 1394 1490" /mobile_element_type="transposon:TIR/CACTA" CDS 6820671..6821825 /locus_tag="TCM_027742" /note="paralog of Thecc1EG027739t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY26265.1" /db_xref="Phytozome:POPTR_0010s26050.1" /db_xref="TAIR:AT5G07610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HV09" /translation="MGSRNASELNLISDTDVMIDILLRLPLKTLMGCKCVCKWWNNLI SDPTFKSNYSRRNPQYYVSGFFLQNFLFLELRSELLFFPYEGQIDAAPEPSLSFIEDD KGVEGVRIEDSCNGLLLCSSFPGQEKHRPYYICKPTTKQYLPLPYLECRNVFSSTIAY DPNKSPHYKIVCICASYLSENHCQIKIFSPVTGSWKVSGKPFPVFDEGMLLNRGVFFN GILHWIGRRNLALRFDLEREVMLTMPMPPIPEGWTERKVRYFGESGGHLFLIETYGAL TAGIDVKEMKSDYSGWFVKYHLNLDTVAFHSPGIRRNYKLAILHIAHQHVGDEDESFM VIHVPGEFVSFKLKDNTLKELQTNNQVNEDLGLWYSWEGVYPYSNTDCYL" mobile_element complement(6824389..6824456) /note="source:CACAO_M_S_E16721_F36_scaffold_2 5612 5679" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6827209..6829971 /note="source:CACAO_M_E44777_F73_scaffold_6 1 2722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6829972..6835065) /note="source:CACAO_M_S_E16721_F36_scaffold_2 12650 17730" /mobile_element_type="retrotransposon:LTR/Copia" gene 6835423..6855360 /locus_tag="TCM_027744" /note="dbxref CacaoGD:Thecc1EG027744" mRNA join(6835423..6835685,6835753..6835805,6836401..6836438, 6838011..6838101,6838654..6838759,6838881..6838951, 6840618..6840687,6841553..6841615,6843263..6843334, 6843453..6843554,6848148..6848222,6849598..6849717, 6850640..6850756,6854026..6854082,6854717..6855360) /locus_tag="TCM_027744" /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s00440.2" /inference="similar to AA sequence:Phytozome:POPTR_0008s00440.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10360t00001" mRNA join(6835437..6835685,6835753..6835805,6836401..6836438, 6838011..6838101,6838654..6838759,6838881..6838951, 6840618..6840687,6841550..6841615,6843263..6843334, 6843453..6843554,6848148..6848222,6849598..6849717, 6850640..6850756,6854024..6854082,6854717..6855276) /locus_tag="TCM_027744" /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s00440.2" /inference="similar to AA sequence:Phytozome:POPTR_0008s00440.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2178t3; inference alignment:Newbler:10:TSA:cgbaL_g10360t00001" CDS join(6835560..6835685,6835753..6835805,6836401..6836438, 6838011..6838101,6838654..6838759,6838881..6838951, 6840618..6840687,6841553..6841615,6843263..6843334, 6843453..6843554,6848148..6848222,6849598..6849717, 6850640..6850756,6854026..6854082,6854717..6854776) /locus_tag="TCM_027744" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /protein_id="EOY26266.1" /db_xref="Phytozome:POPTR_0008s00440.1" /db_xref="TAIR:AT1G78915.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IBX5" /translation="MTMWIAAAATTASASSRFLSFQIQCSDSKAKRGFGSKKPNQKAN KVSASREEKGMKLQQRKSTSKQSGPSPAQAPGLSAQFDGKSNSSSLDIDFEERLEAIR RAAVQQKKAEEQKEFGPIDYDAPAESDKKTIGLGTQIGVGVAVVVFGLVFALGDFLPS GSTNPPEEAAVIDKKLSNEEKATLQTRLKQFEAMLSISPKDPTALEGAAVTLTELGDY ARAASLLQDLAKEKTSDPDVFRLLGEVKYALKDYDGSAAAYKLSAMVSKDVNFEVLRG LTNALLAAKRPDEAVQFLLSSRERMNSERLNRPNLKADSNKMETELQKVDPIQVDFLL GKAYSDWGHVSDAVAVYDQLISSHPNDFRGYLAKGIILKENGNVGDAERMFIQARFFA PEKAKALVDRYSRQ" CDS join(6835560..6835685,6835753..6835805,6836401..6836438, 6838011..6838101,6838654..6838759,6838881..6838951, 6840618..6840687,6841550..6841615,6843263..6843334, 6843453..6843554,6848148..6848222,6849598..6849717, 6850640..6850756,6854024..6854038) /locus_tag="TCM_027744" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /protein_id="EOY26267.1" /db_xref="Phytozome:POPTR_0008s00440.1" /db_xref="TAIR:AT1G78915.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IBX5" /translation="MTMWIAAAATTASASSRFLSFQIQCSDSKAKRGFGSKKPNQKAN KVSASREEKGMKLQQRKSTSKQSGPSPAQAPGLSAQFDGKSNSSSLDIDFEERLEAIR RAAVQQKKAEEQKEFGPIDYDAPAESDKKTIGLGTQIGVGVAVVVFGLVFALGDFLPS GSTNPPEEAAVIDKKLSNEEKATLQQTRLKQFEAMLSISPKDPTALEGAAVTLTELGD YARAASLLQDLAKEKTSDPDVFRLLGEVKYALKDYDGSAAAYKLSAMVSKDVNFEVLR GLTNALLAAKRPDEAVQFLLSSRERMNSERLNRPNLKADSNKMETELQKVDPIQVDFL LGKAYSDWGHVSDAVAVYDQLISSHPNDFRGYLAKRELF" mRNA join(<6835661..6835685,6836401..6836438,6838011..6838101, 6838654..6838759,6838881..6838951,6840618..6840687, 6841553..6841615,6843263..6843334,6843453..6843554, 6848148..6848222,6849598..6849717,6850640..6850756, 6854026..6854082,6854717..6855322) /locus_tag="TCM_027744" /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s00440.2" /inference="similar to AA sequence:Phytozome:POPTR_0008s00440.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1182t2; inference alignment:Newbler:10:TSA:cgbaL_g10360t00001" CDS join(<6835663..6835685,6836401..6836438,6838011..6838101, 6838654..6838759,6838881..6838951,6840618..6840687, 6841553..6841615,6843263..6843334,6843453..6843554, 6848148..6848222,6849598..6849717,6850640..6850756, 6854026..6854082,6854717..6854776) /locus_tag="TCM_027744" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 3" /protein_id="EOY26268.1" /db_xref="Phytozome:POPTR_0008s00440.1" /db_xref="TAIR:AT1G78915.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IBX5" /translation="VPKNPTKRKSTSKQSGPSPAQAPGLSAQFDGKSNSSSLDIDFEE RLEAIRRAAVQQKKAEEQKEFGPIDYDAPAESDKKTIGLGTQIGVGVAVVVFGLVFAL GDFLPSGSTNPPEEAAVIDKKLSNEEKATLQTRLKQFEAMLSISPKDPTALEGAAVTL TELGDYARAASLLQDLAKEKTSDPDVFRLLGEVKYALKDYDGSAAAYKLSAMVSKDVN FEVLRGLTNALLAAKRPDEAVQFLLSSRERMNSERLNRPNLKADSNKMETELQKVDPI QVDFLLGKAYSDWGHVSDAVAVYDQLISSHPNDFRGYLAKGIILKENGNVGDAERMFI QARFFAPEKAKALVDRYSRQ" mRNA join(<6838077..6838101,6838659..6838759,6838881..6838951, 6840618..6840687,6841553..6841615,6843263..6843334, 6843453..6843554,6848148..6848222,6849598..6849717, 6850640..6850756,6854026..6854082,6854717..6855322) /locus_tag="TCM_027744" /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s00440.2" /inference="similar to AA sequence:Phytozome:POPTR_0008s00440.2" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1651t5; inference alignment:Newbler:10:TSA:cgbaL_g10360t00001" CDS join(<6838077..6838101,6838659..6838759,6838881..6838951, 6840618..6840687,6841553..6841615,6843263..6843334, 6843453..6843554,6848148..6848222,6849598..6849717, 6850640..6850756,6854026..6854082,6854717..6854776) /locus_tag="TCM_027744" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 4" /protein_id="EOY26269.1" /db_xref="Phytozome:POPTR_0008s00440.2" /db_xref="TAIR:AT1G78915.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IBX5" /translation="RNGWKQLEAVQQKKAEEQKEFGPIDYDAPAESDKKTIGLGTQIG VGVAVVVFGLVFALGDFLPSGSTNPPEEAAVIDKKLSNEEKATLQTRLKQFEAMLSIS PKDPTALEGAAVTLTELGDYARAASLLQDLAKEKTSDPDVFRLLGEVKYALKDYDGSA AAYKLSAMVSKDVNFEVLRGLTNALLAAKRPDEAVQFLLSSRERMNSERLNRPNLKAD SNKMETELQKVDPIQVDFLLGKAYSDWGHVSDAVAVYDQLISSHPNDFRGYLAKGIIL KENGNVGDAERMFIQARFFAPEKAKALVDRYSRQ" mobile_element 6845008..6846087 /note="source:scaffold_1_CACTA_0008 8531 9678" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6846479..6846681) /note="source:scaffold_4_CACTA_0482 4493 4699" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6856652..6856877 /note="source:CACAO_M_E4396_F76_scaffold_2 5447 5675" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6856825..6856983 /note="source:INTACT459_F220_scaffold_4-int 123 1635" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6856984..6858375) /note="source:CACAO_M_E57337_F76_scaffold_9 3923 5315" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6859897..6862134) /note="source:INTACT599_F268_scaffold_9-int 13656 15802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6862187..6862684) /note="source:CACAO_M_E43890_F17_scaffold_5 396 903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6862680..6864918) /note="source:CACAO_M_E3326_F17_scaffold_1 1790 3998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6864911..6865041 /note="source:CACAO_M_E44373_F17_scaffold_6 242 374" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6865020..6865040 /note="source:scaffold_10_CACTA_0134 6556 6576" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6865041..6865165) /note="source:CACAO_M_E11037_F47_scaffold_2 1837 1961" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6865166..6866296) /note="source:CACAO_M_E980_F115_scaffold_1 1957 3089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6866293..6866440) /note="source:CACAO_M_E34414_F115_scaffold_5 1 148" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6866441..6868408) /note="source:CACAO_M_E14113_F106_scaffold_3 10690 12655" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6868408..6869413 /note="source:CACAO_M_E49344_F17_scaffold_7 376 1390" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6869411..6869816) /note="source:CACAO_M_S_E6161_F17_scaffold_2 1 407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6869817..6870413) /note="source:CACAO_M_S_E4911_F76_scaffold_1 2075 2666" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6871344..6872238 /note="source:INTACT459_F220_scaffold_4-int 6569 7468" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6872250..6873016 /note="source:CACAO_M_E71405_F316_scaffold_10 7786 8697" /mobile_element_type="retrotransposon:LTR/Copia" gene 6874338..6877030 /locus_tag="TCM_027747" /note="dbxref CacaoGD:Thecc1EG027747" mRNA join(6874338..6874426,6874829..6875429,6876945..6877030) /locus_tag="TCM_027747" /product="SAUR-like auxin-responsive protein family, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029559001" /inference="similar to AA sequence:frave:gene05342" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1876t1" CDS 6874923..6875402 /locus_tag="TCM_027747" /note="dbxref frave:gene05342" /codon_start=1 /product="SAUR-like auxin-responsive protein family, putative" /protein_id="EOY26270.1" /db_xref="TAIR:AT3G20210.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SS23" /translation="MNHGKMMKHQACHITRTKNFLGLWQFRAQHHPKLPVVPGKSHKI LGSNYEEMSKESLLTGELSDGSNRGSVDPTQVPKGFIAVYVGPELRRFVIPMSYLSMP EFKILMDKVAEEFGFEQEGGLQIPCDEQHFEQILLKCTALQQMSKNKNKSNKKIIFT" mobile_element 6876229..6877740 /note="source:CACAO_M_S_E5464_F76_scaffold_1 4271 5730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6877437..6878046) /note="source:CACAO_M_S_E122136_F76_scaffold_10 18138 18696" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6883138..6883861) /locus_tag="TCM_027748" /note="dbxref CacaoGD:Thecc1EG027748" mRNA complement(6883138..6883861) /locus_tag="TCM_027748" /product="SAUR-like auxin-responsive protein family, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s26030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036780t1" /inference="similar to AA sequence:frave:gene05343" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(6883310..6883831) /locus_tag="TCM_027748" /note="dbxref frave:gene05343; paralog of Thecc1EG036780t1" /codon_start=1 /product="SAUR-like auxin-responsive protein family, putative" /protein_id="EOY26271.1" /db_xref="TAIR:AT2G24400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HK23" /translation="MDSKRSNKIREIVRLQQILKKWKKLANAPKNISGSSSSQLTTSG SSKSIRFLKRTLSFTDVSAASADAVPKGFLAVCVGKELKRFVIPTEYLGHQAFGVLLR KAEEEFGFQQEGVLKIPCEVSTFEKILEMVQHRKDAIFSHDSGCNVDKEIIGCYSPDC EFTPNAHHPQMCR" gene complement(6888609..6892066) /locus_tag="TCM_027749" /note="dbxref CacaoGD:Thecc1EG027749" mRNA complement(join(6888609..6888998,6889193..6889788, 6891351..6892066)) /locus_tag="TCM_027749" /product="H0502G05.11 protein, putative" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.18 coverage" mobile_element 6891464..6891684 /note="source:INTACT44_F119_scaffold_6-int 6958 7179" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(6891602..6891940) /locus_tag="TCM_027749" /codon_start=1 /product="H0502G05.11 protein, putative" /protein_id="EOY26272.1" /translation="MSPHNGENVVNVVNNTNENGRNGKSTIDPFLNTANPSIVGNSVT TTPLTITHGFIIKEELEKLLDQKNKSLNFLGFDLKLLYFARVVKVCVQGMFDEYRRIW KTYLFLLLPL" mobile_element 6896191..6898008 /note="source:INTACT458_F219_scaffold_7-int 14984 16816" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6896912..6898460) /note="source:scaffold_2_CACTA_0252 974 2480" /mobile_element_type="transposon:TIR/CACTA" gene 6898399..6900086 /locus_tag="TCM_027750" /note="dbxref CacaoGD:Thecc1EG027750" mRNA join(6898399..6898755,6899750..6900086) /locus_tag="TCM_027750" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.75 coverage" CDS join(6898466..6898755,6899750..6899969) /locus_tag="TCM_027750" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26273.1" /translation="MSPLCRISHPHAGEVLLAVDLQVASRRRTPPCHRSTGGLAGSPL AQPINPSAFPLGTDRSSPCRQPSLVVRWISLTLFSPVIGKSHLSSLLAPSFRRFDQIS HEALDLVLSKSPRLMFPREHWINAPYGAPIYALWGARKQCSLWSTHLCSPGSTRTVLP REHPQWVFP" mobile_element complement(6898694..6898822) /note="source:scaffold_2_CACTA_0252 526 658" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6898731..6899120 /note="source:CACAO_M_E34142_F67_scaffold_4 5941 6359" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6898784..6899234) /note="source:INTACT444_F216_scaffold_4-int 17514 17975" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6900366..6919096) /locus_tag="TCM_027751" /note="dbxref CacaoGD:Thecc1EG027751" mRNA complement(join(6900366..6901372,6902024..6903222, 6903321..6903565,6906130..6906255,6906353..6906418, 6906516..6907450,6907582..6907981,6909304..6910565, 6911022..6911295,6911710..6912039,6912361..6912498, 6912678..6912789,6912929..6913516,6914085..6914158, 6914283..6914405,6914498..6914628,6914770..6914918, 6915009..6915152,6915923..6916002,6916095..6916211, 6917003..6917387,6918761..6918905,6919003..6919096)) /locus_tag="TCM_027751" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene05344" /inference="similar to AA sequence:frave:gene05344" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc926t4" CDS complement(join(6901356..6901372,6902024..6903222, 6903321..6903565,6906130..6906255,6906353..6906418, 6906516..6907450,6907582..6907981,6909304..6910565, 6911022..6911295,6911710..6912039,6912361..6912498, 6912678..6912789,6912929..6913516,6914085..6914158, 6914283..6914405,6914498..6914628,6914770..6914918, 6915009..6915152,6915923..6916002,6916095..6916211, 6917003..6917387,6918761..6918888)) /locus_tag="TCM_027751" /note="dbxref frave:gene05344" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative" /protein_id="EOY26274.1" /db_xref="TAIR:AT1G16800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FWR3" /translation="MTKRILSKRELLDRWRGIEEEEEENDDTDPSVRRRLHKRKEEWF GDAFSFLISLPKESHIWCGSWDIMGPLLETFYNYFKDECNDSPLRLLWKRISEEMRHC IQCVSQHHQAQEMYSIEYELCSIGPLLDVLRNLDEERVTQHLREINERLVRQEYDPVC DNAEVVNLMYEVLMFPVLLDDQSLFIEFERFIEAVDNMHELALAGHQQFPGVYALLFF NRRVRTVGHRLARSMGKLRATDLEPLQPLLKKFIGSLENEVLPSTIETSRTRAQLDRL PIWLGITSLLEFLEPPAFEEGILERYPIFFDIVLNHISGDSPEFSHAVSCLKELFKML GCKLWLRSTLSPRVMRNTLLGQCFHTRNEKIHKDIFDLFQPFLQSLEALQDGEHEKQR RHFLYFLLHQVPVSSNFSVLTRKTACKIALLIIHRGYKMNPPCPPFECAHIWGPSLVS CLKDSSLHSSLQQPAFDLVQTILVSDAAALITSMLNCSTASSIGKSICIELDDEEEDN DLPFTQVIEGKNMSCWSEFSAQSQITSQEYREWMCVPMLWIDVLVDIDPPLLPISFSK AVLWARSRFPMVEPENSAEVALDVRGWLSSSAAEISSTFGWKLPTGSDDGGGKESKNS IRLITMCLPLLKTFKRLTAHFLVRMGQGELRKQWTWEPRMGESLILLLVDPNDNVRQF GKCILEQVSNTRGLGCGLKFLCFNSLSLSAVYLGLRHALKLVQLDTVLLKFQTLHHFF FVLRKLLTDEELPNSDIAENSSNASNIMKYSSQGGFLKQPRFDALPTTMGRNHSSIDL KIRENFCYSLSEIAWPTICKCLIEGKAFIDYSLCQMTCVRVLEILPVLFERLGPSFVG PFGDFKVALQNLMDFKWLHDLMDWGKSQLKVIVVYWKKAIISLLNALKVLRSDSPPLM VVAIENLISSDAVDMDELTEQVSRLCVSLSKEVSCDIENSTLRLKKSFSGAFSVEGRY SVPGVQASSIEETDVKVLDSLNVAKRKNENNLIVLSDDEKERDMASDKSNHHMLHDES GSLCSDEHTLGTGHAKKDVRSTTTDTSKDLLEAPFERDSLVSQKQEFEKSRVKPPHSL KSKGPDGERKEISSNSKSNVISSQCRVDKKNKFDESVKSRCSNQGCNKTVSGTSDRIL KELVHDAADDPLEVAFKTVRVLPSFLAKSDSLFPKRQVIQLKSPFENKSGLHRLEAQV KRFKPPRLDDWFRPILEIDFFVMVGLASPGEDESRTFNKLREVPVSFQSPEQYVNIFQ PLVLEEFKAQLHNSFLEMSSWEDMYCGTISVLSVERVDDFHLVRFVYEGDDSTASKSF SENDLVLLTKEPLQSVSHDVHMVGKVERRERDNKRRSIILLVRFYLQNGSIRLNQARR QLLERSKWHASHIMSITPQLREFQALSSIKDIPLLPVILNPVKDSTIPDKPRVEFSKL SQPLQQILRSSFNDSQLQALNVAVGSQRIKKDFELSLIQGPPGTGKTRTIVAMVGVLL ASYQRRTNESENSQNGALKQSCSSFTNSRTHISQSTAVARAWQDAALARQLNEDVEKS KESIESSTRGRVLICAQSNAAVDELVSRISSEGLYGRDGKKYKPYLVRVGNAKTVHPN SLPFFIDTLVDHRLAEEKMHASDARNDSSVESSSMVLRSNLEKLVENIRFYETKRANI RDGNSDLKRTLEDGAHKATDVKEMSDMEIEAKLRRLYKQKKQIYKDLSATQSKEKKNN EETKALRNKLRKFILKEAEIVLTTLSGCGGDLYGVCAASISSFKFGNPSEQTLFDAVV IDEAAQALEPASLIPLQLLKSRGTKCIMVGDPKQLPATVLSNVASKFMYECSMFERLQ RAGHPVVMLTEQYRMHPEICRFPSLHFYDNKVLNGDTMLSKLASFHGTKGFGPYLFYD VVDGQELRGKNAGALSLYNEHEADAAVELLRVFRKKYPSEFVGGRIGIITPYKCQLSL LRSRFSSAFGSSVIADIEFNTVDGFQGREVDILVLSTVRAADSSSTPGINSSIGFVAD VRRMNVALTRAKLSLWILGNARTLQTNHNWAALVKDAKQRNLVLSIKRPYNIIFKTIA RKNPFPEDSDTHLSHVKHVEKVGGTGQLVKQNECREKLKFEGNRKHIGSLSHCIRTVS GDDNDSVKRKDIPCSKRKEKDDCGPPIKRNISSASANAERGKSQNVKSTILEKLVTGN GSQEEKGSEVKFNLGKTHMDERKSNNNAGEETGHSGKNKKFNMPKGSKKSSGHEQRSL HASTPRPDGNKKEREANEGGRDTKEVGNSQNLNAKRKQQREAVDAILFSALIPSKKSE QSTKALHQKRPLSPPSVVSGGFKPPKKMKGPPKS" mobile_element complement(6916270..6916330) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3097 3143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6922241..6922282) /note="source:CACAO_M_S_E109853_F60_scaffold_9 14895 14936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6922248..6922286 /note="source:INTACT410F_F357_scaffold_4-int 9988 10026" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6922275..6923067 /note="source:CACAO_M_S_E101631_F270_scaffold_9 489 1302" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6923051..6924478 /note="source:CACAO_M_E3248_F5_scaffold_1 2396 3736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6923133..6924397) /note="source:INTACT280_F60_scaffold_5-int 9231 10498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6925693..6926828) /note="source:scaffold_1_CACTA_0016 11017 12238" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6926830..6928237) /note="source:scaffold_3_CACTA_0383 4087 5463" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6928235..6929086) /note="source:CACAO_M_E56681_F47_scaffold_8 1 854" /mobile_element_type="retrotransposon:LTR/Copia" gene 6931641..6935408 /locus_tag="TCM_027752" /note="dbxref CacaoGD:Thecc1EG027752" mRNA join(6931641..6931909,6934046..6934062,6934274..6935408) /locus_tag="TCM_027752" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(6931868..6931909,6934046..6934062,6934274..6934454) /locus_tag="TCM_027752" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26275.1" /translation="MGFDNLITFILLVVRMFWLKVDAVNELAKEVFNKKYPKKPLEVF MGKWNILVTTQIRNHDRRKGINGNYPCNPCKPNNE" mobile_element 6935247..6937299 /note="source:scaffold_4_CACTA_0490 9 2041" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6938510..6938615 /note="source:CACAO_M_E23991_F4_scaffold_4 16031 16134" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(6941379..6947022) /locus_tag="TCM_027755" /note="dbxref CacaoGD:Thecc1EG027755" mRNA complement(join(6941379..6941911,6942075..6942134, 6943432..6943537,6943745..6943890,6944018..6944100, 6944192..6944297,6945467..6945563,6945664..6945950, 6946468..6946615,6946704..6947022)) /locus_tag="TCM_027755" /product="Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25520.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019752001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08968t00001" CDS complement(join(6941891..6941911,6942075..6942134, 6943432..6943537,6943745..6943890,6944018..6944100, 6944192..6944297,6945467..6945563,6945664..6945950, 6946468..6946615,6946704..6946810)) /locus_tag="TCM_027755" /codon_start=1 /product="Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial" /protein_id="EOY26276.1" /db_xref="Phytozome:GSVIVT01019752001" /db_xref="TAIR:AT2G33840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S9J2" /translation="MAEQSPPDQTPPSSDIQSLSINSQPSSSSSSSSTPQLSVEERFR IIRSVGEECIQEDELLNLLTHKPEPICYDGFEPSGRMHIAQGVVKAINVNKLTSAGCK VKIWVADWFAQLNNKMGGDLKKIKIVGQYLIEIWKAVGMDLNGKVEFLWSSDEINSRA SEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELSAAQILYPCMQCADIFFLKADICQ LGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSSIFMEDEE AEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWFHEFRVERSAENGGDKTFKNFEELV SDYESGELHPADLKPALSRALNKILQPVRNHFNNDAKAKDLLKRVKSYRVTK" mobile_element complement(6949120..6949187) /note="source:scaffold_1_CACTA_0024 11961 12030" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6949722..6949876 /note="source:CACAO_M_E1841_F5_scaffold_1 1 154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6949928..6954560 /note="source:INTACT10_F4_scaffold_6-int 1 4628" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6952561..6958659) /note="source:INTACT11_F4_scaffold_8-int 1 6115" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6958660..6961722 /note="source:INTACT83_F5_scaffold_9-int 289 3347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6966452..6966501 /note="source:INTACT10_F4_scaffold_6-int 4991 5042" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6967615..6970552) /note="source:CACAO_M_E43498_F302_scaffold_5 1 2949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6974248..6974300 /note="source:CACAO_M_S_E5162_F13_scaffold_1 5163 5215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6975021..6975823) /note="source:CACAO_M_S_E4591_F5_scaffold_1 17895 18807" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6977469..6982196) /locus_tag="TCM_027759" /note="dbxref CacaoGD:Thecc1EG027759" mRNA complement(join(6977469..6978187,6978658..6978816, 6978900..6979001,6979219..6979335,6980473..6980553, 6980638..6980685,6981002..6981160,6981313..6981384, 6981610..6982196)) /locus_tag="TCM_027759" /product="Pseudouridine synthase family protein" /inference="alignment:exonerate- protein:2:ricco:29728.m000835" /inference="similar to AA sequence:Phytozome:GSVIVT01029556001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06735t00001" CDS complement(join(6977813..6978187,6978658..6978816, 6978900..6979001,6979219..6979335,6980473..6980553, 6980638..6980685,6981002..6981160,6981313..6981384, 6981610..6981912)) /locus_tag="TCM_027759" /codon_start=1 /product="Pseudouridine synthase family protein" /protein_id="EOY26277.1" /db_xref="Phytozome:GSVIVT01029556001" /db_xref="TAIR:AT1G78910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5XET6" /translation="MQKSRLGWQFLSLVRHYSRVAPPPPAYADPVLRVSNSVAYLGAP KQGPKPRQLLSLPPFPGYPLPGKNPGGTARVTAISWLKYYFDEIPDSAIQSHFNKGLV QMESSNAGDTCIERDGLMKPLRKIKHNEVMEVGTRVWVPVSIAETRISKRFDCIPSGT LYPNKDEIDYLQRLVKYKDYAILVLNKPPKLPVKGSLPVHNSMDALAAAALSYDHDEG PKLVHRLDRESSGLLLMGRTKESVAHLHWLFNDLNTVKSSCKAWNDACDVKYQRFWAL VIGTPKEKEGLICAPLSKILLDDGKTERVILAQNVGLEASQEAITEYRVLGPMINGCS WIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTTGKPYKL RRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLPVLNKNTETLPPALSMKPDLLR FVATMPKHMKISWNLMSSYLV" mobile_element complement(6987156..6987174) /note="source:INTACT1817F_F27_scaffold_11-int 542 562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6987175..6990025 /note="source:CACAO_M_E44796_F15_scaffold_6 1 2851" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6993548..7000159) /note="source:INTACT287_F193_scaffold_2-int 1 6617" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7001540..7001615) /note="source:CACAO_M_E870_F22_scaffold_1 1369 1449" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7004084..7004236) /note="source:scaffold_1_CACTA_0011 3505 3656" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7007386..7009329) /note="source:CACAO_M_E3884_F22_scaffold_1 16036 17859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7009618..7011112) /note="source:CACAO_M_E3884_F22_scaffold_1 14019 15536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7011810..7011854 /note="source:INTACT1818F_F49_scaffold_11-int 19880 19926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7012006..7012123 /note="source:INTACT1818F_F49_scaffold_11-int 19964 20073" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7013246..7016008 /note="source:CACAO_M_E44798_F87_scaffold_6 1 2763" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7019216..7019301 /note="source:CACAO_M_E35511_F5_scaffold_5 2257 2338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7019770..7019872) /note="source:CACAO_M_E23991_F4_scaffold_4 4983 5081" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7021073..7021212) /note="source:CACAO_M_E23991_F4_scaffold_4 15249 15390" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7022005..7022659) /note="source:CACAO_M_E23991_F4_scaffold_4 13955 14386" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7023438..7025083 /note="source:CACAO_M_S_E67338_F300_scaffold_6 1 1646" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7025935..7027802) /note="source:CACAO_M_S_E84261_F4_scaffold_6 2 1860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7030905..7031473) /note="source:INTACT670_F33_scaffold_3-int 2393 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7031723..7033869) /note="source:CACAO_M_E57857_F33_scaffold_9 1 2146" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7034629..7034984 /note="source:CACAO_M_E69760_F9_scaffold_9 11938 12284" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7035469..7035637) /note="source:CACAO_M_E23991_F4_scaffold_4 16027 16184" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7035870..7035928) /note="source:INTACT261_F189_scaffold_2-int 12725 12779" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7037573..7037618 /note="source:INTACT261_F189_scaffold_2-int 12733 12768" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7037879..7038616 /note="source:CACAO_M_E69760_F9_scaffold_9 12279 12977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7041196..7042840) /note="source:CACAO_M_S_E89558_F73_scaffold_8 1068 2721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7042718..7043223 /note="source:CACAO_M_E3720_F73_scaffold_1 2230 2733" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7045447..7050011 /locus_tag="TCM_027762" /note="dbxref CacaoGD:Thecc1EG027762" mRNA join(7045447..7045548,7045798..7045939,7046796..7046890, 7047885..7048218,7048606..7048699,7049284..7049869) /locus_tag="TCM_027762" /product="Mitochondrial substrate carrier family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s00470.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s00470.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00062t00004; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15760t1; inference alignment:Newbler:10:TSA:cgbaP1_g00543t00002" mRNA join(7045448..7045550,7045799..7045939,7046796..7046890, 7047885..7048218,7048606..7048843,7049284..7050011) /locus_tag="TCM_027762" /product="Mitochondrial substrate carrier family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s00470.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s00470.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00543t00002" CDS join(7045521..7045550,7045799..7045939,7046796..7046890, 7047885..7048218,7048606..7048843,7049284..7049534) /locus_tag="TCM_027762" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Mitochondrial substrate carrier family protein isoform 1" /protein_id="EOY26278.1" /db_xref="Phytozome:POPTR_0008s00470.1" /db_xref="TAIR:AT3G20240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LJX5" /translation="MTPKATAPSQKNNYRVFGNMALVVPKELEELDKPSSLSSPRPFE VRFQVPDFGVPIRDFLRTREVGEFLSGALAGAMTKAVLAPLETIRTRMVVGVGSKNIS GSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAKEKWKQNESPK LQIGHVNVNFSLSWISPAAVAGAAAGIVSTLACHPLEVLKDRLTVSPDIYPSLSIAIS KIYKDGGVGAFYAGISPTLIGMLPYSTCYYFLYEKLKISYCKSKKKKSLNRPEMLLVG ALAGFTASTISFPLEVARKRLMVGALQGKCPPNMAAALAEVIRDEGLMGLYRGWGASC LKVMPSSGITWMFYEAWKDILLVEKRML" mRNA join(7045549..7045668,7045799..7045939,7046796..7046890, 7047885..7048218,7048606..7048843,7049284..7049775) /locus_tag="TCM_027762" /product="Mitochondrial substrate carrier family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s00470.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s00470.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00543t00002; inference alignment:Newbler:10:TSA:cgbaP1_g00543t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15760t1" CDS join(7045826..7045939,7046796..7046890,7047885..7048218, 7048606..7048843,7049284..7049534) /locus_tag="TCM_027762" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Mitochondrial substrate carrier family protein isoform 2" /protein_id="EOY26279.1" /db_xref="Phytozome:POPTR_0008s00470.1" /db_xref="TAIR:AT3G20240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LJX5" /translation="MALVVPKELEELDKPSSLSSPRPFEVRFQVPDFGVPIRDFLRTR EVGEFLSGALAGAMTKAVLAPLETIRTRMVVGVGSKNISGSFIEVIEQQGWQGLWAGN GINMLRIIPTQAIELGTFECVKRAMTTAKEKWKQNESPKLQIGHVNVNFSLSWISPAA VAGAAAGIVSTLACHPLEVLKDRLTVSPDIYPSLSIAISKIYKDGGVGAFYAGISPTL IGMLPYSTCYYFLYEKLKISYCKSKKKKSLNRPEMLLVGALAGFTASTISFPLEVARK RLMVGALQGKCPPNMAAALAEVIRDEGLMGLYRGWGASCLKVMPSSGITWMFYEAWKD ILLVEKRML" CDS join(7045826..7045939,7046796..7046890,7047885..7048218, 7048606..7048699,7049284..7049534) /locus_tag="TCM_027762" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Mitochondrial substrate carrier family protein isoform 3" /protein_id="EOY26280.1" /db_xref="Phytozome:POPTR_0008s00470.1" /db_xref="TAIR:AT3G20240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LJX5" /translation="MALVVPKELEELDKPSSLSSPRPFEVRFQVPDFGVPIRDFLRTR EVGEFLSGALAGAMTKAVLAPLETIRTRMVVGVGSKNISGSFIEVIEQQGWQGLWAGN GINMLRIIPTQAIELGTFECVKRAMTTAKEKWKQNESPKLQIGHVNVNFSLSWISPAA VAGAAAGIVSTLACHPLEVLKDRLTVSPDIYPSLSIAISKIYKDGGVGAFYAGFTAST ISFPLEVARKRLMVGALQGKCPPNMAAALAEVIRDEGLMGLYRGWGASCLKVMPSSGI TWMFYEAWKDILLVEKRML" gene complement(7050312..7053004) /locus_tag="TCM_027763" /note="dbxref CacaoGD:Thecc1EG027763" mRNA complement(join(7050312..7050612,7051081..7051150, 7051463..7051604,7052755..7053004)) /locus_tag="TCM_027763" /product="Reticulon family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029554001" /inference="similar to AA sequence:Phytozome:POPTR_0008s00480.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08774t00001" CDS complement(join(7050497..7050612,7051081..7051150, 7051463..7051604,7052755..7052930)) /locus_tag="TCM_027763" /codon_start=1 /product="Reticulon family protein" /protein_id="EOY26281.1" /db_xref="Phytozome:POPTR_0008s00480.1" /db_xref="TAIR:AT1G78895.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GYL8" /translation="MEGRSDVGKALGLLVCGTLVYYHCAYRNSSLLSLFSDVLIVLLC SLAILGLLFRQMNISVPVDPLEWQISQDAANSIVAWLANTVGAAESVLRVAATGHDKR LFFRVVVCLYILSAVGRLVSGATVAYAGLCLFCLCMFAENSQSIRTCVPQLQRQRNGT TVEEDNM" gene complement(7053607..7068213) /locus_tag="TCM_027764" /note="dbxref CacaoGD:Thecc1EG027764" mRNA complement(join(7053607..7053775,7053902..7053965, 7054640..7054811,7056635..7056829,7057661..7057771, 7057879..7058091,7059390..7059497,7059610..7059751, 7059868..7061273,7062954..7063741,7066597..7067191, 7067687..7068213)) /locus_tag="TCM_027764" /product="Pumilio, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006300" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039334t2" /inference="similar to AA sequence:Phytozome:GSVIVT01029553001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2257t1" CDS complement(join(7053943..7053965,7054640..7054811, 7056635..7056829,7057661..7057771,7057879..7058091, 7059390..7059497,7059610..7059751,7059868..7061273, 7062954..7063601)) /locus_tag="TCM_027764" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG039334t2" /codon_start=1 /product="Pumilio, putative isoform 1" /protein_id="EOY26282.1" /db_xref="Phytozome:GSVIVT01029553001" /db_xref="TAIR:AT3G20250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RHU5" /translation="MATESPMRMIESSGATKWHSSKDALVFGLPLKDMEVEELRLLLK EQRIHGDQTDTVPNRSGSAPPSMEGSFAALGNLLAQQNNSLTSSLASLSSVIENCESE EQLRSDPAYFAYYSSNINLNPRLPPPLISRENRRLARHIGGFGNNWRARSIDDSGSGS LMFYQSSLSTHGEESEDDRSPRQASDKWPEDSTVSLPEQDSASLTGRHKSLVDLIQED FPRTPSPVYSQSRSSGITATEETIDHDVHAISSNFPSINASEVPDSNFGSTDVCMDTS ALDAHTIALISQNDSLETSIPGQPCSEQTGRLPGPQKEDTSLKDASLDADASDNVQQS VVSTVESRMRKKQEAQQSHGRNIPQHYSSIQPGSPHQAQGVAAQGFSQGLSHLYSHPK FSSPESQPLLHSSGLTPPMYATAAAYVTSGNPFYPNFQPSGVYGPQYDVGGYAVSPAL FPPFMPGYPSHSAIPLTFDSTVSGSSFNNRTSGASTGETTPHSSGLQHLGHFYGQHGL MLPPSLVDPLHMQYLQHPFNNVFGASVQRGHLASTGVTGGQVDSFVQKESTVAAYIGD PKLQPPINGSLSIPNPGKVGATGGSYGGHPSMGVIAQYPSSPLASPLMPSSPVGGMSP LSRRNEIRFPPKAVPYSGWHGQRGFNSFEDSKRHSFLEELKSSNARKFEISDIAGRIV EFSVDQHGSRFIQQKLEHCSVEDKESVFKEVLPHASRLMTDVFGNYVIQKFFEHGSSE QRKELADQLVGNMLNFSLQMYGCRVIQKALEVIELDQKTQLVQELDGHIMKCVRDQNG NHVIQKCIECVPTYRIGFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEMQSQCIVD EILDAAYDLAQDQYGNYVTQHVLERGKPHERSHIISKLTGKIVQMSQHKYASNVVEKC LEYGDSTERELLVEEIIGQSDENDTLLTMMKDQFANYVVQKILDISNDRQREVLLGRV RVHLNALKKYTYGKHIAARFEQLFGEESDESGH" mRNA complement(join(<7054741..7054769,7056635..7056829, 7057661..7057771,7057879..7058091,7059390..7059497, 7059610..7059751,7059868..7061273,7062954..7063741, 7066597..7066755)) /locus_tag="TCM_027764" /product="Pumilio, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006300" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039334t2" /inference="similar to AA sequence:Phytozome:GSVIVT01029553001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc583t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2257t1; inference alignment:Newbler:10:TSA:cgbaB_g06891t00001" CDS complement(join(<7054743..7054769,7056635..7056829, 7057661..7057771,7057879..7058091,7059390..7059497, 7059610..7059751,7059868..7061273,7062954..7063601)) /locus_tag="TCM_027764" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG039334t2" /codon_start=1 /product="Pumilio, putative isoform 2" /protein_id="EOY26283.1" /db_xref="Phytozome:GSVIVT01029553001" /db_xref="TAIR:AT3G20250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RHU5" /translation="MATESPMRMIESSGATKWHSSKDALVFGLPLKDMEVEELRLLLK EQRIHGDQTDTVPNRSGSAPPSMEGSFAALGNLLAQQNNSLTSSLASLSSVIENCESE EQLRSDPAYFAYYSSNINLNPRLPPPLISRENRRLARHIGGFGNNWRARSIDDSGSGS LMFYQSSLSTHGEESEDDRSPRQASDKWPEDSTVSLPEQDSASLTGRHKSLVDLIQED FPRTPSPVYSQSRSSGITATEETIDHDVHAISSNFPSINASEVPDSNFGSTDVCMDTS ALDAHTIALISQNDSLETSIPGQPCSEQTGRLPGPQKEDTSLKDASLDADASDNVQQS VVSTVESRMRKKQEAQQSHGRNIPQHYSSIQPGSPHQAQGVAAQGFSQGLSHLYSHPK FSSPESQPLLHSSGLTPPMYATAAAYVTSGNPFYPNFQPSGVYGPQYDVGGYAVSPAL FPPFMPGYPSHSAIPLTFDSTVSGSSFNNRTSGASTGETTPHSSGLQHLGHFYGQHGL MLPPSLVDPLHMQYLQHPFNNVFGASVQRGHLASTGVTGGQVDSFVQKESTVAAYIGD PKLQPPINGSLSIPNPGKVGATGGSYGGHPSMGVIAQYPSSPLASPLMPSSPVGGMSP LSRRNEIRFPPKAVPYSGWHGQRGFNSFEDSKRHSFLEELKSSNARKFEISDIAGRIV EFSVDQHGSRFIQQKLEHCSVEDKESVFKEVLPHASRLMTDVFGNYVIQKFFEHGSSE QRKELADQLVGNMLNFSLQMYGCRVIQKALEVIELDQKTQLVQELDGHIMKCVRDQNG NHVIQKCIECVPTYRIGFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEMQSQCIVD EILDAAYDLAQDQYGNYVTQHVLERGKPHERSHIISKLTGKIVQMSQHKYASNVVEKC LEYGDSTERELLVEEIIGQSDENDTLLILDISNDRQ" mRNA complement(join(7056802..7056831,7056961..7057208, 7057661..7057771,7057879..7058091,7059390..7059497, 7059610..7059751,7059868..7061273,7062954..7063741, 7066597..7066755)) /locus_tag="TCM_027764" /product="Pumilio, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30169.m006300" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039334t2" /inference="similar to AA sequence:Phytozome:GSVIVT01029553001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc583t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2257t1; inference alignment:Newbler:10:TSA:cgbaB_g06891t00001" CDS complement(join(7057200..7057208,7057661..7057771, 7057879..7058091,7059390..7059497,7059610..7059751, 7059868..7061273,7062954..7063601)) /locus_tag="TCM_027764" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG039334t2" /codon_start=1 /product="Pumilio, putative isoform 3" /protein_id="EOY26284.1" /db_xref="Phytozome:GSVIVT01029553001" /db_xref="TAIR:AT3G20250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RHU5" /translation="MATESPMRMIESSGATKWHSSKDALVFGLPLKDMEVEELRLLLK EQRIHGDQTDTVPNRSGSAPPSMEGSFAALGNLLAQQNNSLTSSLASLSSVIENCESE EQLRSDPAYFAYYSSNINLNPRLPPPLISRENRRLARHIGGFGNNWRARSIDDSGSGS LMFYQSSLSTHGEESEDDRSPRQASDKWPEDSTVSLPEQDSASLTGRHKSLVDLIQED FPRTPSPVYSQSRSSGITATEETIDHDVHAISSNFPSINASEVPDSNFGSTDVCMDTS ALDAHTIALISQNDSLETSIPGQPCSEQTGRLPGPQKEDTSLKDASLDADASDNVQQS VVSTVESRMRKKQEAQQSHGRNIPQHYSSIQPGSPHQAQGVAAQGFSQGLSHLYSHPK FSSPESQPLLHSSGLTPPMYATAAAYVTSGNPFYPNFQPSGVYGPQYDVGGYAVSPAL FPPFMPGYPSHSAIPLTFDSTVSGSSFNNRTSGASTGETTPHSSGLQHLGHFYGQHGL MLPPSLVDPLHMQYLQHPFNNVFGASVQRGHLASTGVTGGQVDSFVQKESTVAAYIGD PKLQPPINGSLSIPNPGKVGATGGSYGGHPSMGVIAQYPSSPLASPLMPSSPVGGMSP LSRRNEIRFPPKAVPYSGWHGQRGFNSFEDSKRHSFLEELKSSNARKFEISDIAGRIV EFSVDQHGSRFIQQKLEHCSVEDKESVFKEVLPHASRLMTDVFGNYVIQKFFEHGSSE QRKELADQLVGNMLNFSLQMYGCRVIQKALEVIELDQKTQLVQELDGHIMKCVRDQNG NHVIQKCIECVPTYRIGFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEMQSQCIVD EILDAAYDLAQDQYGNYVTQVK" mRNA complement(join(7057742..7058091,7059390..7059497, 7059610..7059751,7059868..7061273,7062954..7063741, 7066597..7066755)) /locus_tag="TCM_027764" /product="Pumilio, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:30169.m006300" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039334t2" /inference="similar to AA sequence:Phytozome:GSVIVT01029553001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc592t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2257t1; inference alignment:Newbler:10:TSA:cgbaB_g06891t00001" CDS complement(join(7057798..7058091,7059390..7059497, 7059610..7059751,7059868..7061273,7062954..7063601)) /locus_tag="TCM_027764" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG039334t2" /codon_start=1 /product="Pumilio, putative isoform 4" /protein_id="EOY26285.1" /db_xref="Phytozome:GSVIVT01029553001" /db_xref="TAIR:AT3G20250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RHU5" /translation="MATESPMRMIESSGATKWHSSKDALVFGLPLKDMEVEELRLLLK EQRIHGDQTDTVPNRSGSAPPSMEGSFAALGNLLAQQNNSLTSSLASLSSVIENCESE EQLRSDPAYFAYYSSNINLNPRLPPPLISRENRRLARHIGGFGNNWRARSIDDSGSGS LMFYQSSLSTHGEESEDDRSPRQASDKWPEDSTVSLPEQDSASLTGRHKSLVDLIQED FPRTPSPVYSQSRSSGITATEETIDHDVHAISSNFPSINASEVPDSNFGSTDVCMDTS ALDAHTIALISQNDSLETSIPGQPCSEQTGRLPGPQKEDTSLKDASLDADASDNVQQS VVSTVESRMRKKQEAQQSHGRNIPQHYSSIQPGSPHQAQGVAAQGFSQGLSHLYSHPK FSSPESQPLLHSSGLTPPMYATAAAYVTSGNPFYPNFQPSGVYGPQYDVGGYAVSPAL FPPFMPGYPSHSAIPLTFDSTVSGSSFNNRTSGASTGETTPHSSGLQHLGHFYGQHGL MLPPSLVDPLHMQYLQHPFNNVFGASVQRGHLASTGVTGGQVDSFVQKESTVAAYIGD PKLQPPINGSLSIPNPGKVGATGGSYGGHPSMGVIAQYPSSPLASPLMPSSPVGGMSP LSRRNEIRFPPKAVPYSGWHGQRGFNSFEDSKRHSFLEELKSSNARKFEISDIAGRIV EFSVDQHGSRFIQQKLEHCSVEDKESVFKEVLPHASRLMTDVFGNYVIQKFFEHGSSE QRKELADQLVGNMLNFSLQMYGCRVIQKALEVIELDQKTQLVQELDGHIMKCVRDQNG NHVIQKCIECVPTYRIGFIISAFRGQVATLSTHPYGCRVIQVILHFVGFLCFWLNIRK HVVLSALFL" mRNA complement(join(<7059610..7059751,7059868..7061273, 7062954..7063732,7066597..7066621)) /locus_tag="TCM_027764" /product="Pumilio, putative isoform 5" /inference="alignment:exonerate- protein:2:ricco:30169.m006300" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039334t3" /inference="similar to AA sequence:Phytozome:GSVIVT01029553001" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.41 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc551t16; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2257t1; inference alignment:Newbler:10:TSA:cgbaB_g06891t00001" CDS complement(join(<7059610..7059751,7059868..7061273, 7062954..7063601)) /locus_tag="TCM_027764" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG039334t3" /codon_start=1 /product="Pumilio, putative isoform 5" /protein_id="EOY26286.1" /db_xref="Phytozome:GSVIVT01029553001" /db_xref="TAIR:AT3G20250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RHU5" /translation="MATESPMRMIESSGATKWHSSKDALVFGLPLKDMEVEELRLLLK EQRIHGDQTDTVPNRSGSAPPSMEGSFAALGNLLAQQNNSLTSSLASLSSVIENCESE EQLRSDPAYFAYYSSNINLNPRLPPPLISRENRRLARHIGGFGNNWRARSIDDSGSGS LMFYQSSLSTHGEESEDDRSPRQASDKWPEDSTVSLPEQDSASLTGRHKSLVDLIQED FPRTPSPVYSQSRSSGITATEETIDHDVHAISSNFPSINASEVPDSNFGSTDVCMDTS ALDAHTIALISQNDSLETSIPGQPCSEQTGRLPGPQKEDTSLKDASLDADASDNVQQS VVSTVESRMRKKQEAQQSHGRNIPQHYSSIQPGSPHQAQGVAAQGFSQGLSHLYSHPK FSSPESQPLLHSSGLTPPMYATAAAYVTSGNPFYPNFQPSGVYGPQYDVGGYAVSPAL FPPFMPGYPSHSAIPLTFDSTVSGSSFNNRTSGASTGETTPHSSGLQHLGHFYGQHGL MLPPSLVDPLHMQYLQHPFNNVFGASVQRGHLASTGVTGGQVDSFVQKESTVAAYIGD PKLQPPINGSLSIPNPGKVGATGGSYGGHPSMGVIAQYPSSPLASPLMPSSPVGGMSP LSRRNEIRFPPKAVPYSGWHGQRGFNSFEDSKRHSFLEELKSSNARKFEISDIAGRIV EFSVDQHGSRFIQQKLEHCSVEDKESVFKEVLPHASRLMTDVFGNYVIQK" gene 7067956..7075280 /locus_tag="TCM_027766" /note="dbxref CacaoGD:Thecc1EG027766" mRNA join(7067956..7068092,7068954..7069022,7074240..7074369, 7075241..7075280) /locus_tag="TCM_027766" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1174t1" CDS join(7068033..7068092,7068954..7069022,7074240..7074369, 7075241..7075251) /locus_tag="TCM_027766" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26287.1" /translation="MHVCYLRINAKDTIHMAKPIPLMDNLESQTYETFEKDSVKYIQG TWKMSAYREIATVVTDSKAVPGHDKIAPEDQESEYSKFDSHYSSG" mobile_element 7069803..7071237 /note="source:INTACT672_F7_scaffold_8-int 7278 8729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7071238..7074315 /note="source:CACAO_M_E44805_F115_scaffold_6 1 3078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7074316..7075842 /note="source:CACAO_M_E57725_F7_scaffold_9 1450 2977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7078248..7079269) /note="source:CACAO_M_E639_F17_scaffold_1 468 1497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7081716..7082013 /note="source:INTACT649F_F368_scaffold_5-int 2 281" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7085363..7085467) /note="source:INTACT191F_F350_scaffold_3-int 2599 2709" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7088022..7088113 /note="source:CACAO_M_E59539_F98_scaffold_9 2017 2109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7088041..7088143) /note="source:INTACT676_F297_scaffold_3-int 1201 1293" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7094451..7104403) /locus_tag="TCM_027768" /note="dbxref CacaoGD:Thecc1EG027768" mRNA complement(join(7094451..7094750,7095971..7096710, 7099171..7099270,7104018..7104403)) /locus_tag="TCM_027768" /product="Retrotransposon protein, Ty3-gypsy subclass, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400017105.14" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023662t1" /inference="similar to AA sequence:Phytozome:Glyma04g32860.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1932t1_G2" CDS complement(join(7094705..7094750,7095971..7096710, 7099171..7099270,7104018..7104058)) /locus_tag="TCM_027768" /note="paralog of Thecc1EG023662t1" /codon_start=1 /product="Retrotransposon protein, Ty3-gypsy subclass, putative" /protein_id="EOY26288.1" /db_xref="Phytozome:Glyma04g32860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2QTG7" /translation="MKFINTRWVVRALLRDCPMAHQSPDSARGSTQPASSAPSVAVSS GREPLPVPEWKREHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQY ARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFSTTFHPQTDGQSER TIQTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGW LEVGERKLLGPELVQDATEKIHMIRQKMLTAQSRHKLYADNRRRDLEFQVGDHVFLKV SPTKGVMRFGKKGKSSPRNQPIKSPIPSPYSA" mobile_element complement(7095468..7095798) /note="source:CACAO_M_E85507_F96_scaffold_11 7048 7379" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7095900..7096723 /note="source:CACAO_M_E5000_F96_scaffold_2 2663 3486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7097044..7099395) /note="source:INTACT1308F_F98_scaffold_7-int 3938 6284" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7099496..7099873) /note="source:INTACT1308F_F98_scaffold_7-int 3510 3887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7102845..7103619) /note="source:INTACT99F_F96_scaffold_2-int 1 774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7103564..7103637) /note="source:CACAO_on_S_E58_scaffold_2 1927 1995" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(7105737..7105873) /note="source:CACAO_M_E43428_F369_scaffold_5 1166 1322" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7105878..7106016 /note="source:INTACT695_F301_scaffold_5-int 3457 3594" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7106117..7106209 /note="source:CACAO_M_E14347_F12_scaffold_3 8778 8863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7115933..7116100) /note="source:scaffold_9_CACTA_0922 4299 4461" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7115958..7119075 /note="source:CACAO_Mutator_E161_scaffold_1 4 5611" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(7119430..7120696) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5808 7114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7120813..7121596) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7121600..7122930 /note="source:scaffold_1_CACTA_0009 8000 9278" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7123209..7125722 /note="source:CACAO_Mutator_E1998_scaffold_9 3164 5651" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7125773..7126606 /note="source:CACAO_Mutator_E1998_scaffold_9 5628 6459" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7127065..7127112 /note="source:CACAO_Mutator_E1998_scaffold_9 6459 6506" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7127231..7128374 /note="source:scaffold_1_CACTA_0009 9522 10668" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7127280..7131253 /note="source:CACAO_Mutator_E1998_scaffold_9 3570 10203" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7131275..7134032 /note="source:CACAO_M_E44709_F9_scaffold_6 4613 7376" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7134848..7134905) /note="source:CACAO_Mutator_E1149_scaffold_5 4716 4767" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7134877..7134955 /note="source:scaffold_3_CACTA_0382 1854 1919" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7134907..7134970) /note="source:scaffold_3_CACTA_0382 1855 1918" /mobile_element_type="transposon:TIR/CACTA" gene complement(7142468..7149213) /locus_tag="TCM_027772" /note="dbxref CacaoGD:Thecc1EG027772" mRNA complement(join(7142468..7143417,7144203..7144408, 7144648..7145052,7146605..7147631,7149182..7149213)) /locus_tag="TCM_027772" /product="Gb:AAF36750.1, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006257" /inference="similar to AA sequence:ricco:30169.m006257" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc66t1" mRNA complement(join(7142543..7142871,7144203..7144408, 7144648..7145052,7146605..7148163)) /locus_tag="TCM_027772" /product="Gb:AAF36750.1, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006257" /inference="similar to AA sequence:ricco:30169.m006257" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc74t3; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc66t1" CDS complement(join(7142809..7142871,7144203..7144408, 7144648..7145052,7146605..7147061)) /locus_tag="TCM_027772" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006257" /codon_start=1 /product="Gb:AAF36750.1, putative isoform 2" /protein_id="EOY26290.1" /db_xref="TAIR:AT3G20260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTR6" /translation="MDFLKVKKFRKAHKPDPEKDLEDKPVPQPEELTNENGATEGAAA GDNDLNKSSEADAAAEVEDDDDEFITNEVKRRLKELRRNSFMVLIPEEEEESFPEDEE EEAGETSSSEWRDVEAEGRQWWGGFDAVYEKYSERMLFFDRMIAQQLKEAGFRNHSTP SPKSASKKLASPLRCLSLKKIEEPDEETKHLQQPMNNPYQDLETAYVAQICLTWEALH CQYTQLCQIVLCQPENPTCYNQSAQHLQQFQVLLQRFIENEPFQEGLRAEIYARARNI LPKLLQIPNIQGSDHKEKVEEESNYLVHAPDIIRIIENSILTFQLFVKMDKKKHSSVL NLFGNQNPMATPLQQVQSLLMKERSMESRGLSAAFSLEAAVH" CDS complement(join(7143172..7143417,7144203..7144408, 7144648..7145052,7146605..7147061)) /locus_tag="TCM_027772" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006257" /codon_start=1 /product="Gb:AAF36750.1, putative isoform 1" /protein_id="EOY26289.1" /db_xref="TAIR:AT3G20260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTR6" /translation="MDFLKVKKFRKAHKPDPEKDLEDKPVPQPEELTNENGATEGAAA GDNDLNKSSEADAAAEVEDDDDEFITNEVKRRLKELRRNSFMVLIPEEEEESFPEDEE EEAGETSSSEWRDVEAEGRQWWGGFDAVYEKYSERMLFFDRMIAQQLKEAGFRNHSTP SPKSASKKLASPLRCLSLKKIEEPDEETKHLQQPMNNPYQDLETAYVAQICLTWEALH CQYTQLCQIVLCQPENPTCYNQSAQHLQQFQVLLQRFIENEPFQEGLRAEIYARARNI LPKLLQIPNIQGSDHKEKVEEESNYLVHAPDIIRIIENSILTFQLFVKMDKKKHSSVL NLFGNQNPMATPLQQVQSLLMKKGMKIKELCKKRRGWKKKSWPQTCEDVPLLFGLIDI KIVSRVLRMARISKEQLFWCEEKMKKLDLCDGKLQRDPLPILFPC" mRNA complement(join(<7144379..7144408,7144524..7144552, 7144648..7145052,7146605..7148163)) /locus_tag="TCM_027772" /product="Gb:AAF36750.1, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30169.m006257" /inference="similar to AA sequence:ricco:30169.m006257" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc74t4; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc66t1" CDS complement(join(<7144379..7144408,7144524..7144552, 7144648..7145052,7146605..7147061)) /locus_tag="TCM_027772" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30169.m006257" /codon_start=1 /product="Gb:AAF36750.1, putative isoform 3" /protein_id="EOY26291.1" /db_xref="TAIR:AT3G20260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTR6" /translation="MDFLKVKKFRKAHKPDPEKDLEDKPVPQPEELTNENGATEGAAA GDNDLNKSSEADAAAEVEDDDDEFITNEVKRRLKELRRNSFMVLIPEEEEESFPEDEE EEAGETSSSEWRDVEAEGRQWWGGFDAVYEKYSERMLFFDRMIAQQLKEAGFRNHSTP SPKSASKKLASPLRCLSLKKIEEPDEETKHLQQPMNNPYQDLETAYVAQICLTWEALH CQYTQLCQIVLCQPENPTCYNQSAQHLQQFQVLLQRFIENEPFQEGLRAEIYARARNI LPKLLQIPNIQVNALKQGFVQVQIIRKRWKR" mobile_element 7149204..7149425 /note="source:CACAO_Mutator_E1998_scaffold_9 10223 10431" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7149416..7149553 /note="source:CACAO_Mutator_E1998_scaffold_9 11107 11244" /mobile_element_type="transposon:TIR/Mutator" gene complement(7151619..7159473) /locus_tag="TCM_027773" /note="dbxref CacaoGD:Thecc1EG027773" mRNA complement(join(7151619..7152707,7154502..7156263, 7159241..7159473)) /locus_tag="TCM_027773" /product="Oligomeric Golgi complex subunit 4" /inference="alignment:exonerate- protein:2:ricco:30076.m004446" /inference="similar to AA sequence:Phytozome:POPTR_0002s18030.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2255t1" CDS complement(join(7152078..7152707,7154502..7156124)) /locus_tag="TCM_027773" /codon_start=1 /product="Oligomeric Golgi complex subunit 4" /protein_id="EOY26292.1" /db_xref="Phytozome:POPTR_0002s18030.1" /db_xref="TAIR:AT4G01400.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L838" /translation="MPSTPNGSVPKTPESTEQHDDTSTSSIKFGTPEALNYVRSLTDV GAMTRLLHECIAYLRALDVDLDTLLSQRSDLDKILNNLQRSADVLDIVKAESDHMLSN ITASCDLADQVSSKVRELDLAQSRVNSTLLRIDAIVERGNCIDGVKSAFDAEDYESAT EYVRTFLEIDNKFKDSGSDQREQLLASKKQLEGIVKKKLMAAVDQRDHPTILRFIKLY SPLGLEEEGLQVYVGYLKKVIGMRSRLEYEHLVELMEQSHGQDQNNQVNFVGCLTNFF KDIVLAVEENDEILRSLCGEDGVVYGIFELQEECDSRGSLILKKYMEYRKLAKLSSEI NAQNNNLLVVGAPEGPNPREIELYLEEILSLMQLGEDYTEYMVSKIKGMTTVDPDLVP RATKAFRTGSFSKVAQDVTGFYVILEGFFMVENVRKAIRIDEHVPDSLTTSMVDDVFY VLQSCLRRAISTSSISSVVAVLSGASSLLNNEYYEALQQKIREPNLGAKLFLGGVGVQ KTGTEIATALNNIDLSSEYVLKLKHEIEEQCAEVFPAPAEREKVKSCLSELADLSNTF KQALNAGMEQLVTTVTPRIRPVLDSVATISYELSESEYADNEVNDPWVQRLLHAVEIN VAWLQSLMTANNYDSFVHLVIDFIVKRLEVIMMQKRFSQLGGLQLDRDTRALVSHFSG MTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLSLRVDF KPEAIAALKL" mobile_element 7157007..7159905 /note="source:CACAO_M_S_E67345_F33_scaffold_6 1 2899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7161576..7162548 /note="source:CACAO_M_E69760_F9_scaffold_9 11952 12883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7178386..7179105) /note="source:scaffold_8_CACTA_0858 4362 5090" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7179105..7180319) /note="source:scaffold_8_CACTA_0858 3179 4431" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7180389..7180985) /note="source:scaffold_8_CACTA_0858 7578 8189" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7181516..7183346 /note="source:scaffold_1_CACTA_0009 1630 4530" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7183137..7183413 /note="source:CACAO_M_E33977_F20_scaffold_4 5675 5955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7183414..7185048) /note="source:INTACT859F_F13_scaffold_5-int 8241 9875" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7185057..7188527 /note="source:CACAO_Mutator_E161_scaffold_1 743 4183" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7188291..7188646 /note="source:scaffold_1_CACTA_0009 8920 9282" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7188488..7189052) /note="source:CACAO_on_E193_scaffold_6 3977 4613" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7188743..7189140 /note="source:scaffold_1_CACTA_0009 8893 9282" /mobile_element_type="transposon:TIR/CACTA" gene complement(7189329..7189674) /locus_tag="TCM_027776" /note="dbxref CacaoGD:Thecc1EG027776" mRNA complement(7189329..7189674) /locus_tag="TCM_027776" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023870t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(7189413..7189631) /locus_tag="TCM_027776" /note="paralog of Thecc1EG023870t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26293.1" /translation="MTSRDARVENGEEAASEEEKVPLREQLQIFQQDMHALIDNLMQR TFDLEAAILSNKKILAEIEFKVYELRKK" mobile_element 7190031..7190424 /note="source:CACAO_Mutator_E161_scaffold_1 5619 6003" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7190471..7195358 /note="source:scaffold_1_CACTA_0009 9411 13828" /mobile_element_type="transposon:TIR/CACTA" gene complement(7196426..7205582) /locus_tag="TCM_027778" /note="dbxref CacaoGD:Thecc1EG027778" mRNA complement(join(7196426..7196852,7196947..7197074, 7198219..7198360,7198503..7198598,7198702..7198842, 7200956..7201130,7202039..7202171,7202276..7202348, 7202693..7202786,7203196..7203287,7204061..7204155, 7204249..7204435,7205097..7205582)) /locus_tag="TCM_027778" /product="Long-chain base1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g35800.1" /inference="similar to AA sequence:Phytozome:GSVIVT01000259001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaL_g05600t00001" mRNA complement(join(7196486..7196852,7196947..7197074, 7198219..7198360,7198503..7198598,7198702..7198842, 7200956..7201130,7202039..7202171,7202276..7202348, 7202693..7202786,7203196..7203287,7204061..7204155, 7204249..7204438,7205101..7205257)) /locus_tag="TCM_027778" /product="Long-chain base1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g35800.1" /inference="similar to AA sequence:Phytozome:GSVIVT01000259001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04910t00001; alternateUTRof:Thecc1EG027778t1; inference alignment:Newbler:10:TSA:cgbaL_g05600t00001" mRNA complement(join(7196512..7196852,7196947..7197074, 7198219..7198360,7198503..7198598,7198702..7198842, 7200956..7201130,7202039..7202171,7202276..7202348, 7202693..7202786,7203196..7203287,7204061..7204155, 7204249..7204437,7205100..7205299)) /locus_tag="TCM_027778" /product="Long-chain base1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g35800.1" /inference="similar to AA sequence:Phytozome:GSVIVT01000259001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05419t00001; alternateUTRof:Thecc1EG027778t1; inference alignment:Newbler:10:TSA:cgbaL_g05600t00001" CDS complement(join(7196670..7196852,7196947..7197074, 7198219..7198360,7198503..7198598,7198702..7198842, 7200956..7201130,7202039..7202171,7202276..7202348, 7202693..7202786,7203196..7203287,7204061..7204155, 7204249..7204354)) /locus_tag="TCM_027778" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Long-chain base1 isoform 1" /protein_id="EOY26294.1" /db_xref="Phytozome:GSVIVT01000259001" /db_xref="TAIR:AT4G36480.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94IB8" /translation="MESAALNLVNATLNWVTLALDAPSARAVVFGVHIGGHLFVEVLL LVVILFLLSQKSYKPPKRPLTKKEIDELCDEWVPESLIPPITEEMQSEPPVLESAAGP HTIINGKEVVNFASANYLGFIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCE ARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDIIVVDEGVHWGIQNGLYLSRSTIV YFKHNDMESLEKTLEKITAENQRAKKLRRYIVVEAVYQNSGQIAPLDKIIRLKEKYRF RVLLDESNSFGVLGRTGRGLTEYCGVPIEKIDIVTAAMGHALATEGGFCTGSARVIDH QRLSSSGYVFSASLPPYLASAAITAIDVLEQNPELTSKLKENVAILWKGLSDILGLSV ASNPESPIVFLRLEKSTGSVKSDLQLLEEIADHALKEDSIFVVVSKRSTLDKCPLPVG IRLFVSAAHIESDLLKACASLKRVAAEVLSLRDRR" CDS complement(join(7196670..7196852,7196947..7197074, 7198219..7198360,7198503..7198598,7198702..7198842, 7200956..7201130,7202039..7202171,7202276..7202348, 7202693..7202786,7203196..7203287,7204061..7204155, 7204249..7204354)) /locus_tag="TCM_027778" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Long-chain base1 isoform 1" /protein_id="EOY26295.1" /db_xref="Phytozome:GSVIVT01000259001" /db_xref="TAIR:AT4G36480.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94IB8" /translation="MESAALNLVNATLNWVTLALDAPSARAVVFGVHIGGHLFVEVLL LVVILFLLSQKSYKPPKRPLTKKEIDELCDEWVPESLIPPITEEMQSEPPVLESAAGP HTIINGKEVVNFASANYLGFIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCE ARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDIIVVDEGVHWGIQNGLYLSRSTIV YFKHNDMESLEKTLEKITAENQRAKKLRRYIVVEAVYQNSGQIAPLDKIIRLKEKYRF RVLLDESNSFGVLGRTGRGLTEYCGVPIEKIDIVTAAMGHALATEGGFCTGSARVIDH QRLSSSGYVFSASLPPYLASAAITAIDVLEQNPELTSKLKENVAILWKGLSDILGLSV ASNPESPIVFLRLEKSTGSVKSDLQLLEEIADHALKEDSIFVVVSKRSTLDKCPLPVG IRLFVSAAHIESDLLKACASLKRVAAEVLSLRDRR" CDS complement(join(7196670..7196852,7196947..7197074, 7198219..7198360,7198503..7198598,7198702..7198842, 7200956..7201130,7202039..7202171,7202276..7202348, 7202693..7202786,7203196..7203287,7204061..7204155, 7204249..7204354)) /locus_tag="TCM_027778" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Long-chain base1 isoform 1" /protein_id="EOY26296.1" /db_xref="Phytozome:GSVIVT01000259001" /db_xref="TAIR:AT4G36480.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94IB8" /translation="MESAALNLVNATLNWVTLALDAPSARAVVFGVHIGGHLFVEVLL LVVILFLLSQKSYKPPKRPLTKKEIDELCDEWVPESLIPPITEEMQSEPPVLESAAGP HTIINGKEVVNFASANYLGFIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCE ARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDIIVVDEGVHWGIQNGLYLSRSTIV YFKHNDMESLEKTLEKITAENQRAKKLRRYIVVEAVYQNSGQIAPLDKIIRLKEKYRF RVLLDESNSFGVLGRTGRGLTEYCGVPIEKIDIVTAAMGHALATEGGFCTGSARVIDH QRLSSSGYVFSASLPPYLASAAITAIDVLEQNPELTSKLKENVAILWKGLSDILGLSV ASNPESPIVFLRLEKSTGSVKSDLQLLEEIADHALKEDSIFVVVSKRSTLDKCPLPVG IRLFVSAAHIESDLLKACASLKRVAAEVLSLRDRR" gene complement(7205856..7210877) /locus_tag="TCM_027779" /note="dbxref CacaoGD:Thecc1EG027779" mRNA complement(join(7205856..7206685,7207026..7207162, 7207767..7207918,7208697..7208957,7210740..7210876)) /locus_tag="TCM_027779" /product="Lipid-binding serum glycoprotein family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006258" /inference="similar to AA sequence:frave:gene05352" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01167t00001" mRNA complement(join(7206206..7206685,7207026..7207163, 7207767..7207918,7208697..7208957,7210740..7210877)) /locus_tag="TCM_027779" /product="Lipid-binding serum glycoprotein family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006258" /inference="similar to AA sequence:frave:gene05352" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2242t2; inference alignment:Newbler:10:TSA:cgbaP1_g01167t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1430t3" CDS complement(join(7206518..7206685,7207026..7207162, 7207767..7207918,7208697..7208950)) /locus_tag="TCM_027779" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene05352" /codon_start=1 /product="Lipid-binding serum glycoprotein family protein isoform 1" /protein_id="EOY26297.1" /db_xref="TAIR:AT3G20270.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BN92" /translation="MSDNRDNDTSTSVGNSFGKLPDHLLIEIFIRVPVSEWAELSCVK KQWANLFRGECLWQAALMRTFPSASQVKRWPGPIPQGLSKRRFAALYVSKHIFALENE IDEIVGHTYLFLKEQLELSTMPPPSGVLHGTIIDQFIACGKSRDTAHELASQIWLAVL DNLEENQHTFLSLKHLALEGDVFLPYPYSRSIKVQWKVFEKLFTDFRDCLNRADYYDV LAMAKNKFQPIPSAWLGY" CDS complement(join(7207087..7207163,7207767..7207918, 7208697..7208950)) /locus_tag="TCM_027779" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene05352" /codon_start=1 /product="Lipid-binding serum glycoprotein family protein isoform 2" /protein_id="EOY26298.1" /db_xref="TAIR:AT3G20270.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BN92" /translation="MSDNRDNDTSTSVGNSFGKLPDHLLIEIFIRVPVSEWAELSCVK KQWANLFRGECLWQAALMRTFPSASQVKRWPGPIPQGLSKRRFAALYVSKHIFALENE IDEIVGHTYLFLKEQLELSTMPPPSGVLHGTIIGSIYCLWEVKRHSPRACFTDLAGSS " gene 7211055..7217719 /locus_tag="TCM_027780" /note="dbxref CacaoGD:Thecc1EG027780" mRNA join(7211055..7211822,7213078..7214365,7214524..7214697, 7215139..7215236,7217276..7217500,7217616..7217719) /locus_tag="TCM_027780" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene18551" /inference="similar to AA sequence:Phytozome:POPTR_0007s08060.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1646t7" CDS join(7211105..7211822,7213078..7214171) /locus_tag="TCM_027780" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY26299.1" /db_xref="Phytozome:POPTR_0007s08060.1" /db_xref="TAIR:AT3G20730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HGU1" /translation="MNVVRIKTAKAINFLNRTQLRGTKSLCNGGEIQQDSKLVQLDSS FYMRILQLCINSKAKRQALLVHSQIITNGYISNVHLATKLIISYAKIGDMIAAKKVFD KMSERTIVSWTAVISGYSQNGFFENALLVFSEMRKAGFKGNQFSYGSALKACTGLRCL ERGLQIQGCVEKGRFVMNLFVQSGLLDLHAKCGNMEDASRLFYRMGERDLVSWNVMIG GFALQGFPDDAFQLFREMMREGKIPDCFTFGSVLRVSFGEGGLMKVSQVHGLITLLGF ESCNLLAGSLIDAYSKCGNLQCASKLYRNMPKKDIISCTALIASFARQGKHNRDPLDL FKEINSTQMGMDNMILCSILNICANVAELSLGRQIHAFSLKCQPSSDLAMGNALIDMY AKSGQIKDANKVFNEMDERNVISWTSLIAGYGRHGYGHEAIALYEKMEHEGLKPNDVT FLSLLFACSHTGLVNEGLELFNAMISKYKILPRAEHLSCMVDLLARGGQLEAAYNLIQ EMNIEPTTSLWGALLGASNIYGNMSIGEAAAAHLFNMDPEKSVNYIALAGIYAGAGAW ENAWETRKLMDKRSAVKDPAYSLLSSTEKKVVLLQLH" gene complement(7217974..7229186) /locus_tag="TCM_027782" /note="dbxref CacaoGD:Thecc1EG027782" mRNA complement(join(7217974..7218920,7224038..7224293, 7228724..7228848,7229001..7229186)) /locus_tag="TCM_027782" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s00540.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400031801" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1646t8_C1" CDS complement(join(7218178..7218920,7224038..7224293, 7228724..7228848,7229001..7229094)) /locus_tag="TCM_027782" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26300.1" /db_xref="Phytozome:PGSC0003DMP400031801" /db_xref="TAIR:AT1G51080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HK33" /translation="MCSSMRLRRVAKQKIRKQENKKLLGNLVHHHVFIIVSVLLFLST LLYLYKRERKMQKMVDIVTSIASTCAQCEAVQDEVGPTTEVVSNIDAIAAVEAVPNVG VDVGITPYNDLAPYAGTVIDDAKTTPTNPCASFSLVPEHKDVSSASGTYVAHIEQSGL RLSSSLKPRRASSASAPKTIPATDLVIDFGKHKGKMLGTLPSNYLKWVSKNLRVRHFE HWANLADQVLQDPVYQDRIEWEFAENVLHGNNAKVTTNDSFLSGNQSAVSMLLEISER FGWDNEDKAGWRKVNFELLGTSKGGRIPRVADMNDGESKSGREEKEVKPEDGVFGEKR RERRERVRLKREVKLGIKQKSGGSFGHGVDGGVRLDRSQGSDKDRTVKIYNPFPGRES LLNKLLNNRRRFL" mobile_element 7221288..7221497 /note="source:CACAO_Again_on_E14_scaffold_1 1 214" /mobile_element_type="transposon:TIR/hAT" mobile_element 7221641..7221824 /note="source:CACAO_Again_on_E14_scaffold_1 11063 11247" /mobile_element_type="transposon:TIR/hAT" mobile_element 7226640..7226694 /note="source:CACAO_M_E22186_F143_scaffold_3 9983 10041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7227978..7228311 /note="source:CACAO_M_E33977_F20_scaffold_4 17878 18232" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7229428..7232473) /locus_tag="TCM_027783" /note="dbxref CacaoGD:Thecc1EG027783" mRNA complement(join(7229428..7229790,7232036..7232128, 7232204..7232276,7232410..7232473)) /locus_tag="TCM_027783" /product="DNA directed RNA polymerase, 7 kDa subunit" /inference="alignment:exonerate- protein:2:ricco:28152.m000922" /inference="similar to AA sequence:Phytozome:GSVIVT01035228001" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g14753t00001" CDS complement(join(7229768..7229790,7232036..7232128, 7232204..7232243)) /locus_tag="TCM_027783" /codon_start=1 /product="DNA directed RNA polymerase, 7 kDa subunit" /protein_id="EOY26301.1" /db_xref="Phytozome:GSVIVT01035228001" /db_xref="TAIR:AT5G41010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FLM8" /translation="MDPQPEPVTYICGDCGQENTLKHGDVIQCRECGYRILYKKRTRR IVQYEAR" mobile_element complement(7234574..7234728) /note="source:CACAO_Mutator_E1998_scaffold_9 11076 11248" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(7234751..7234770) /note="source:CACAO_M_S_E52921_F60_scaffold_5 16527 16545" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7234771..7235265 /note="source:CACAO_M_E85187_F15_scaffold_10 1 495" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7236692..7237726 /note="source:CACAO_M_E53388_F15_scaffold_8 4600 5636" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7238108..7238486 /note="source:CACAO_Mutator_E161_scaffold_1 4778 5156" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7240403..7241154 /note="source:CACAO_Mutator_E1888_scaffold_9 6736 7521" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7241859..7242243 /note="source:CACAO_M_E58894_F15_scaffold_9 1 368" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7242344..7242656) /note="source:CACAO_M_E52071_F15_scaffold_7 2360 2672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7244146..7244311 /note="source:INTACT901F_F95_scaffold_6-int 12387 12552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7247789..7249866) /note="source:scaffold_9_CACTA_0924 4084 6153" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7253522..7253621) /note="source:scaffold_9_CACTA_0924 6052 6153" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7253629..7254168) /note="source:scaffold_9_CACTA_0924 4470 5020" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7254543..7254779 /note="source:CACAO_M_S_E90022_F9_scaffold_8 12810 13046" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7254624..7258018) /note="source:INTACT453_F4_scaffold_9-int 15159 18602" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7261091..7263133) /note="source:CACAO_M_E5627_F4_scaffold_2 122 2186" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7263113..7263207) /note="source:CACAO_M_S_E99244_F4_scaffold_9 6267 6362" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7263795..7263961) /note="source:CACAO_M_S_E64832_F14_scaffold_5 3100 3252" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7264921..7265041) /note="source:CACAO_M_E35674_F13_scaffold_5 7234 7349" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7265390..7265921 /note="source:CACAO_M_E32900_F13_scaffold_4 4392 4899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7265476..7265937) /note="source:CACAO_M_S_E64832_F14_scaffold_5 1918 2375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7265898..7266162 /note="source:CACAO_M_E44899_F328_scaffold_6 2959 3201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7266156..7266483) /note="source:INTACT11_F4_scaffold_8-int 6689 7016" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7269466..7270899 /note="source:CACAO_M_S_E67350_F9_scaffold_6 1 1434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7272534..7275607) /note="source:scaffold_9_CACTA_0931 1 3084" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7276260..7276356 /note="source:INTACT70_F13_scaffold_10-int 8837 8934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7279313..7280424 /note="source:scaffold_1_CACTA_0016 1415 2484" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7283286..7285860 /note="source:scaffold_1_CACTA_0016 2871 5500" /mobile_element_type="transposon:TIR/CACTA" gene complement(7286766..7294395) /locus_tag="TCM_027785" /note="dbxref CacaoGD:Thecc1EG027785" mRNA complement(join(7286766..7287193,7287731..7288048, 7294240..7294395)) /locus_tag="TCM_027785" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(7287051..7287193,7287731..7287854)) /locus_tag="TCM_027785" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26302.1" /translation="MPRLTSYLKKEICVYMNYGEPHGGIVLERMVYGTQSMRPTHGAV VDISPVIPTYSVRCHHWEITLDGDCDATYVRLLRVMSTSGVYSG" mobile_element complement(7287971..7288028) /note="source:CACAO_M_E12463_F12_scaffold_3 4689 4747" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7289125..7290101 /note="source:CACAO_M_E52760_F33_scaffold_8 1 978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7290202..7292179 /note="source:CACAO_M_S_E31650_F33_scaffold_3 980 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7292070..7292192) /note="source:CACAO_M_E52278_F17_scaffold_7 4358 4481" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7294640..7303272 /locus_tag="TCM_027786" /note="dbxref CacaoGD:Thecc1EG027786" mRNA join(7294640..7295068,7296278..7296404,7296583..7296638, 7296749..7296805,7296979..7297090,7297170..7297207, 7297865..7297966,7298065..7298121,7298457..7298528, 7298606..7298707,7298798..7298860,7298937..7299069, 7299290..7299396,7300396..7300590,7300834..7300920, 7301053..7301157,7301479..7301576,7301704..7301782, 7301871..7301913,7302005..7302056,7302301..7302426, 7302552..7303250) /locus_tag="TCM_027786" /product="Vacuolar ATP synthase subunit A isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s26000.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s26000.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15796t2" mRNA join(7294758..7295068,7296278..7296404,7296583..7296638, 7296749..7296805,7296979..7297090,7297170..7297207, 7297865..7297966,7298065..7298121,7298457..7298528, 7298606..7298707,7298798..7298860,7298937..7299069, 7299290..7299396,7300396..7300590,7300834..7300920, 7301053..7301157,7301367..7301373,7301486..7301782, 7302338..7302426,7302552..7302750) /locus_tag="TCM_027786" /product="Vacuolar ATP synthase subunit A isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s26000.1" /inference="similar to AA sequence:Phytozome:Glyma07g00430.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc272t3; alternateUTRof:Thecc1EG027786t3; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc272t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15796t2" mRNA join(7294758..7295068,7296278..7296404,7296583..7296638, 7296749..7296805,7296979..7297090,7297170..7297207, 7297865..7297966,7298065..7298121,7298457..7298528, 7298606..7298707,7298798..7298860,7298937..7299069, 7299290..7299396,7300396..7300590,7300834..7300920, 7301053..7301157,7301367..7301373,7301486..7301576, 7301704..7301782,7302338..7302426,7302552..7302750) /locus_tag="TCM_027786" /product="Vacuolar ATP synthase subunit A isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s26000.1" /inference="similar to AA sequence:Phytozome:Glyma07g00430.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc272t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc272t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15796t2" mRNA join(7294896..7295068,7296278..7296404,7296583..7296638, 7296749..7296805,7296979..7297090,7297170..7297207, 7297865..7297966,7298065..7298121,7298457..7298528, 7298606..7298707,7298798..7298860,7298937..7299069, 7299290..7299396,7300396..7300590,7300834..7300920, 7301053..7301161,7301486..7301576,7301704..7301782, 7302338..7302426,7302552..7302668,7302779..7303272) /locus_tag="TCM_027786" /product="Vacuolar ATP synthase subunit A isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s26000.1" /inference="similar to AA sequence:Phytozome:Glyma07g00430.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc41t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc272t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15796t2" CDS join(7294991..7295068,7296278..7296404,7296583..7296638, 7296749..7296805,7296979..7297090,7297170..7297207, 7297865..7297966,7298065..7298121,7298457..7298528, 7298606..7298707,7298798..7298860,7298937..7299069, 7299290..7299396,7300396..7300590,7300834..7300920, 7301053..7301157,7301479..7301576,7301704..7301782, 7301871..7301913,7302005..7302056,7302301..7302426, 7302552..7302666) /locus_tag="TCM_027786" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Vacuolar ATP synthase subunit A isoform 1" /protein_id="EOY26303.1" /db_xref="Phytozome:POPTR_0010s26000.1" /db_xref="TAIR:AT1G78900.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P38606" /translation="MPAVYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMAGAAMYE LVRVGHDNLIGEIIRLEGDSATIQVYEETAGLTVNDPVLRTHKPLSVELGPGILGNIF DGIQRPLKTIAKRSGDVYIPRGVSVPALDKDTLWDFQPKKIGEGDLLTGGDLYATVFE NSLMQHHVALPPDAMGKITYIAPPGQYSLKDTVLELEFQGVKKQLTMLQTWPVRTPRP VATKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVY VGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGI TIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERA GKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPS VNWLISYSKYSGALESFYEKFDQDFIYIRTKAREVLQREDDLNEIVQLVGKDALAETD KITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFNTLANQIFGKVGGKKM ATILSAGVMLHFIADKIKYDSRGVGEISNASCVQAVEKAAGMDGQKITYSLIKHRLGD LFYRLVSQKFEDPAEGEEALVAKLKKLYEDLTAGFRALEDETR" CDS join(7294991..7295068,7296278..7296404,7296583..7296638, 7296749..7296805,7296979..7297090,7297170..7297207, 7297865..7297966,7298065..7298121,7298457..7298528, 7298606..7298707,7298798..7298860,7298937..7299069, 7299290..7299396,7300396..7300590,7300834..7300920, 7301053..7301161,7301486..7301487) /locus_tag="TCM_027786" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Vacuolar ATP synthase subunit A isoform 2" /protein_id="EOY26304.1" /db_xref="Phytozome:Glyma07g00430.1" /db_xref="TAIR:AT1G78900.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P38606" /translation="MPAVYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMAGAAMYE LVRVGHDNLIGEIIRLEGDSATIQVYEETAGLTVNDPVLRTHKPLSVELGPGILGNIF DGIQRPLKTIAKRSGDVYIPRGVSVPALDKDTLWDFQPKKIGEGDLLTGGDLYATVFE NSLMQHHVALPPDAMGKITYIAPPGQYSLKDTVLELEFQGVKKQLTMLQTWPVRTPRP VATKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVY VGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGI TIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERA GKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPS VNWLISYSKYSGALESFYEKFDQDFIYIRTKAREVLQREDDLNEIVQV" CDS join(7294991..7295068,7296278..7296404,7296583..7296638, 7296749..7296805,7296979..7297090,7297170..7297207, 7297865..7297966,7298065..7298121,7298457..7298528, 7298606..7298707,7298798..7298860,7298937..7299069, 7299290..7299396,7300396..7300590,7300834..7300920, 7301053..7301157,7301367..7301372) /locus_tag="TCM_027786" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Vacuolar ATP synthase subunit A isoform 3" /protein_id="EOY26305.1" /db_xref="Phytozome:Glyma07g00430.1" /db_xref="TAIR:AT1G78900.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P38606" /translation="MPAVYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMAGAAMYE LVRVGHDNLIGEIIRLEGDSATIQVYEETAGLTVNDPVLRTHKPLSVELGPGILGNIF DGIQRPLKTIAKRSGDVYIPRGVSVPALDKDTLWDFQPKKIGEGDLLTGGDLYATVFE NSLMQHHVALPPDAMGKITYIAPPGQYSLKDTVLELEFQGVKKQLTMLQTWPVRTPRP VATKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVY VGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGI TIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERA GKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPS VNWLISYSKYSGALESFYEKFDQDFIYIRTKAREVLQREDDLNEIVQL" CDS join(7294991..7295068,7296278..7296404,7296583..7296638, 7296749..7296805,7296979..7297090,7297170..7297207, 7297865..7297966,7298065..7298121,7298457..7298528, 7298606..7298707,7298798..7298860,7298937..7299069, 7299290..7299396,7300396..7300590,7300834..7300920, 7301053..7301157,7301367..7301372) /locus_tag="TCM_027786" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Vacuolar ATP synthase subunit A isoform 3" /protein_id="EOY26306.1" /db_xref="Phytozome:Glyma07g00430.1" /db_xref="TAIR:AT1G78900.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P38606" /translation="MPAVYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMAGAAMYE LVRVGHDNLIGEIIRLEGDSATIQVYEETAGLTVNDPVLRTHKPLSVELGPGILGNIF DGIQRPLKTIAKRSGDVYIPRGVSVPALDKDTLWDFQPKKIGEGDLLTGGDLYATVFE NSLMQHHVALPPDAMGKITYIAPPGQYSLKDTVLELEFQGVKKQLTMLQTWPVRTPRP VATKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVY VGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGI TIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERA GKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPS VNWLISYSKYSGALESFYEKFDQDFIYIRTKAREVLQREDDLNEIVQL" gene 7303895..7309669 /locus_tag="TCM_027787" /note="dbxref CacaoGD:Thecc1EG027787" mRNA join(7303895..7304019,7306854..7307025,7307711..7308193, 7308308..7308494,7308596..7308748,7308838..7309110, 7309204..7309256,7309336..7309407,7309492..7309563, 7309648..7309669) /locus_tag="TCM_027787" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042921t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2706t3" mobile_element 7304148..7304350 /note="source:CACAO_Mutator_E1998_scaffold_9 6249 6453" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(7305947..7317066) /note="source:CACAO_M_E33977_F20_scaffold_4 5405 16541" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(7307985..7308193,7308308..7308494,7308596..7308748, 7308838..7309110,7309204..7309256,7309336..7309407, 7309492..7309507) /locus_tag="TCM_027787" /note="paralog of Thecc1EG042921t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26307.1" /translation="MIHRITERQSMDHKLWFAISKSKARLSKQEFCLITGLKFGRMPD VFRRPYEVAADGIHARYWNGQDSVKLLVTPWLLSLVEDIDAWNVFPWGHYVWKLTLDY LLKGFKVLDLSVTKETRLHYNIYGFAWVIQFWTIEAISVFRKIVAPSSLKDNVHPRMC RWDCNQKPKDFYKTIQKLESFDQLWALKTLEPTTDEALREYFVDLNVPLSEGNEYVPI GHMEDQSDWGLGARQKKRSLKEKRASGGTKRIRTAAALVDEMMDKGDDHGQGSEQLLQ NHLPILLKCRVETTCRLQKRGQVLKHRSVQPNRRQLMSRRLRKR" gene 7309730..7312024 /locus_tag="TCM_027788" /note="dbxref CacaoGD:Thecc1EG027788" mRNA join(7309730..7309983,7310577..7311046,7311136..7311316, 7311403..7312024) /locus_tag="TCM_027788" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024277t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1511t2" CDS join(7309864..7309983,7310577..7311046,7311136..7311316, 7311403..7311450) /locus_tag="TCM_027788" /note="paralog of Thecc1EG024277t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26308.1" /translation="MRKHEKDMLELKASIQSLSVAMQTIEDRIVGRILDGLKSQGGPS HGASLEHDDADDGQHHELGVDIDDDVLGADGEHETHVDDVVEEAVAVDVTFQSDDAEG EHLPPADAFVDAVAGAIVLYRESTPDVVEIRLSSPESSAVHYDAAEISDPTEWARLKM ASKYMASPFVDPLVTRQDMRDKIVEDYEAFKKEESARRNVGILGDQGADFFITLEDPN EKMTSEHIDACLSLLCKRMTGPKLKLYTTRACMVDTIFFDTIRMLHTEFPTEDA" gene 7311134..7311992 /locus_tag="TCM_027789" /note="dbxref CacaoGD:Thecc1EG027789" mRNA join(7311134..7311316,7311403..7311992) /locus_tag="TCM_027789" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006372t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3613t1" CDS 7311443..7311955 /locus_tag="TCM_027789" /note="paralog of Thecc1EG006372t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26309.1" /translation="MPELKYKFQMSCGAMWRVKSQRTPKKWEDVDFILVPCNVGWHWV VAKIDLVRWTIKVADSARTLDAKANGVRAGQMTPLTTMMPFICHQAGYFNNIRRKRRD LTPMPLDIHLPKAKVHRQNDSVSCGMFMIGYIEHILQSEKIEIKQNMIAKMRRQYPLK IFSNSCESEP" gene complement(7316589..7319070) /locus_tag="TCM_027791" /note="dbxref CacaoGD:Thecc1EG027791" mRNA complement(join(7316589..7318297,7318472..7319070)) /locus_tag="TCM_027791" /product="Cytochrome BC1 synthesis, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s11240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000317t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400036856" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage" mobile_element 7316776..7317345 /note="source:scaffold_1_CACTA_0009 13257 13839" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(7317519..7318297,7318472..7318916)) /locus_tag="TCM_027791" /note="paralog of Thecc1EG000317t1" /codon_start=1 /product="Cytochrome BC1 synthesis, putative" /protein_id="EOY26310.1" /db_xref="Phytozome:PGSC0003DMP400036856" /db_xref="TAIR:AT3G50930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZG2" /translation="MSSHQKVIKARSLLSTAASIAATAMLIRTIANDFIPADVQNYFS VSLQNLSRHFSSQLTIVIEEFRGLSINQVFEAADVYLGSKTTPSIQRLKVGKSEKENK LALSMDRGEVLVDVYENVEMKWKLFVRELNQYAFGTQTRVILMDLCAPNDIQDTRYGF GAEKGSDGGSGKLYQRGTILQKSWESLETWYLLYGPPGTGKSSLIAAMANHLKYNIYD LDLTAIQTNSDLRFLLLAMPSRSILVVEDIECSIELENRESENEPRRRRFNGGDNQVT LSGLLNFIDGLWSCCGEERIIIFTTNHKERLDPALLRPGRMDMHIHMSYCNASVFKQL AFNYLGICDHQLFQQLEKLLEEVDVTPAEVAGELMKNSNREAAFHGLVKFLYEKISER DTKQENGNKNEQEDE" gene complement(7320710..7321964) /locus_tag="TCM_027792" /note="dbxref CacaoGD:Thecc1EG027792" mRNA complement(join(7320710..7320992,7321492..7321647, 7321734..7321964)) /locus_tag="TCM_027792" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029544001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036797t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029544001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15773t1" CDS complement(join(7320730..7320992,7321492..7321639)) /locus_tag="TCM_027792" /note="paralog of Thecc1EG036797t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26311.1" /db_xref="Phytozome:GSVIVT01029544001" /db_xref="TAIR:AT1G16810.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9F2H0" /translation="MSAYENVIGGKLKLKGKALDVKAGGIKKKKKHRKHQDQITQATQ NDLSAVGSAEVSVDPTEEDINDADKSSGEGKAPHYDDHLTPAERRYIEQREELDVHRL AKEANKSHRDRIQDFNQYLANMSEHYDIPKVGPG" mobile_element 7324372..7324597 /note="source:scaffold_9_CACTA_0934 5778 6022" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7324410..7324564 /note="source:CACAO_Again_on_E14_scaffold_1 880 1053" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(7324565..7327531) /note="source:CACAO_M_E979_F134_scaffold_1 1 2951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7330488..7331613 /note="source:INTACT1263F_F42_scaffold_7-int 965 2091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7331931..7333444 /note="source:CACAO_M_E59624_F42_scaffold_9 2420 3935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7333545..7335530) /note="source:CACAO_M_S_E6027_F12_scaffold_2 4261 6241" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7340902..7341278 /note="source:CACAO_M_E86052_F15_scaffold_12 5778 6154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7341276..7342045) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3577 4329" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7342525..7343736 /note="source:INTACT189_F49_scaffold_5-int 18491 19705" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7343765..7343812) /note="source:scaffold_8_CACTA_0859 658 706" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7345567..7347928) /note="source:CACAO_M_E45129_F33_scaffold_6 544 2907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7350863..7351439 /note="source:CACAO_M_E44833_F33_scaffold_6 2355 2931" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7351451..7353402 /note="source:CACAO_M_E36325_F15_scaffold_5 2 1957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7353503..7354437 /note="source:CACAO_M_E34067_F15_scaffold_4 1983 2919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7354538..7360426) /note="source:CACAO_M_S_E4911_F76_scaffold_1 3 10784" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7360529..7361848 /note="source:INTACT51F_F15_scaffold_1-int 9937 11259" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7362032..7364153) /note="source:CACAO_M_S_E51722_F106_scaffold_4 2536 4669" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7364154..7367123 /note="source:CACAO_M_E44828_F134_scaffold_6 1 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7367124..7368357) /note="source:CACAO_M_E9386_F106_scaffold_2 1312 2543" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7368358..7369145) /note="source:CACAO_M_E52941_F33_scaffold_8 2167 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7369259..7369860 /note="source:CACAO_M_E12901_F33_scaffold_3 804 1405" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7369861..7370573 /note="source:CACAO_M_E52947_F33_scaffold_8 1 713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7370764..7370826 /note="source:scaffold_9_CACTA_0934 6630 6692" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7370825..7372799 /note="source:CACAO_M_E71526_F33_scaffold_10 985 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7372800..7373144 /note="source:INTACT8_F106_scaffold_3-int 7294 7638" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7373145..7375749 /note="source:CACAO_M_E44830_F53_scaffold_6 1 2605" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7375750..7376720) /note="source:CACAO_M_S_E51722_F106_scaffold_4 1 969" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(7380053..7423805) /locus_tag="TCM_027799" /note="dbxref CacaoGD:Thecc1EG027799" mRNA complement(join(7380053..7380150,7384334..7384542, 7401709..7402200,7403623..7404101,7404923..7405005, 7405094..7405175,7405550..7405614,7405711..7405836, 7417837..7417937,7419082..7419208,7419963..7420076, 7420726..7420791,7420877..7420979,7421448..7421503, 7421681..7421903,7423373..7423805)) /locus_tag="TCM_027799" /product="Ergosterol biosynthesis ERG4/ERG24 family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25970.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s25970.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07265t00001" mobile_element complement(7380858..7381192) /note="source:INTACT63_F129_scaffold_1-int 3070 3404" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7381240..7383684 /note="source:CACAO_M_E84309_F333_scaffold_10 1 2456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7383685..7385267) /note="source:CACAO_M_E23727_F42_scaffold_4 1534 3112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7385623..7385893 /note="source:CACAO_M_E44087_F42_scaffold_5 2580 2850" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7385894..7386312 /note="source:CACAO_M_E9386_F106_scaffold_2 11513 11931" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7387935..7390994) /note="source:INTACT63_F129_scaffold_1-int 1 3078" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7391364..7394120 /note="source:CACAO_M_E57391_F87_scaffold_9 1 2762" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7393757..7394161) /note="source:CACAO_M_E45286_F33_scaffold_6 1 350" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7396816..7396876 /note="source:CACAO_M_E85113_F12_scaffold_10 11802 11858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7397239..7400172 /note="source:CACAO_M_E44833_F33_scaffold_6 1 2934" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(7403682..7404101,7404923..7405005, 7405094..7405175,7405547..7405614,7405711..7405836, 7417837..7417937,7419082..7419208,7419963..7420076, 7420726..7420791,7420877..7420979,7421448..7421503, 7421681..7421903,7423373..7423754)) /locus_tag="TCM_027799" /product="Ergosterol biosynthesis ERG4/ERG24 family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25970.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s25970.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3122t3; inference alignment:Newbler:10:TSA:cgbaB_g07265t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc563t11_C1" CDS complement(join(7404035..7404101,7404923..7405005, 7405094..7405175,7405550..7405614,7405711..7405836, 7417837..7417937,7419082..7419208,7419963..7420076, 7420726..7420791,7420877..7420979,7421448..7421503, 7421681..7421903,7423373..7423473)) /locus_tag="TCM_027799" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ergosterol biosynthesis ERG4/ERG24 family isoform 1" /protein_id="EOY26312.1" /db_xref="Phytozome:POPTR_0010s25970.1" /db_xref="TAIR:AT1G50430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LDU6" /translation="MAAATESKMVHSAVVTYSSMLSLLSLCPPFVILLWYTMVHADGS VAQTWNFLKQHGLQGFIEIWPRPTAMAWKIIFIYGAFEAALQLFLPGKRVEGPISPTG NRPVYKANGMAAYFVTLITYISLWWFGIFNPTVVYDHLGEIFSALIFGSLIFCIFLYI KGHVAPSSTDSGSSGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGLMSWAVLAVTFC IKQYELNGKVADSMLVNTILTLVYVTKFFWWEDGYWNTMDIAHDRAGFYICWGCLVWV PSVYTSPGMYLVNHPVNLGTQLALYILLAGILCIYINYDCDRQRQEFRRTNGKCRVWG KAPSKIEATYTTTSGETKTSLLLTSGWWGLSRHFHYVPEILAAFFWTVPALFNHFLPY FYVVFLTILLFDRAKRDDDRCRSKYGKFWKLYCNKVPYKIIPGIY" CDS complement(join(7404035..7404101,7404923..7405005, 7405094..7405175,7405547..7405614,7405711..7405836, 7417837..7417937,7419082..7419208,7419963..7420076, 7420726..7420791,7420877..7420979,7421448..7421503, 7421681..7421903,7423373..7423473)) /locus_tag="TCM_027799" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ergosterol biosynthesis ERG4/ERG24 family isoform 2" /protein_id="EOY26313.1" /db_xref="Phytozome:POPTR_0010s25970.1" /db_xref="TAIR:AT1G50430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LDU6" /translation="MAAATESKMVHSAVVTYSSMLSLLSLCPPFVILLWYTMVHADGS VAQTWNFLKQHGLQGFIEIWPRPTAMAWKIIFIYGAFEAALQLFLPGKRVEGPISPTG NRPVYKANGMAAYFVTLITYISLWWFGIFNPTVVYDHLGEIFSALIFGSLIFCIFLYI KGHVAPSSTDSGSSGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGLMSWAVLAVTFC IKQYELNGKVADSMLVNTILTLVYVTKFFWWEDGYWNTMDIAHDRAGFYICWGCLVWV PSVYTSPGMYLVNHPVNLGTQLALYILLAGILCIYINYDCDRQRQEFRRTNGKCRVWG KAPSKIEATYTTTSGETKTSLLLTSGWWWGLSRHFHYVPEILAAFFWTVPALFNHFLP YFYVVFLTILLFDRAKRDDDRCRSKYGKFWKLYCNKVPYKIIPGIY" mRNA complement(join(7404980..7405175,7405550..7405614, 7405711..7405836,7417837..7417937,7419082..7419208, 7419963..7420076,7420726..7420791,7420877..7420979, 7421448..7421503,7421681..7421903,7423373..7423754)) /locus_tag="TCM_027799" /product="Ergosterol biosynthesis ERG4/ERG24 family isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25970.1" /inference="similar to AA sequence:ricco:30169.m006262" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc546t5; inference alignment:Newbler:10:TSA:cgbaB_g07265t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc563t11_C1" CDS complement(join(7405034..7405175,7405550..7405614, 7405711..7405836,7417837..7417937,7419082..7419208, 7419963..7420076,7420726..7420791,7420877..7420979, 7421448..7421503,7421681..7421903,7423373..7423473)) /locus_tag="TCM_027799" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30169.m006262" /codon_start=1 /product="Ergosterol biosynthesis ERG4/ERG24 family isoform 3" /protein_id="EOY26314.1" /db_xref="TAIR:AT1G50430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LDU6" /translation="MAAATESKMVHSAVVTYSSMLSLLSLCPPFVILLWYTMVHADGS VAQTWNFLKQHGLQGFIEIWPRPTAMAWKIIFIYGAFEAALQLFLPGKRVEGPISPTG NRPVYKANGMAAYFVTLITYISLWWFGIFNPTVVYDHLGEIFSALIFGSLIFCIFLYI KGHVAPSSTDSGSSGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGLMSWAVLAVTFC IKQYELNGKVADSMLVNTILTLVYVTKFFWWEDGYWNTMDIAHDRAGFYICWGCLVWV PSVYTSPGMYLVNHPVNLGTQLALYILLAGILCIYINYDCDRQRQEFRRTNGKCRVWG KAPSKIEATYTTTSGETKTSLLLTSGWWGLSRHFHYVPEILAAFFWTVPALFNHVSLF LIVISMLLGATCNHI" mobile_element 7406859..7407238 /note="source:CACAO_M_S_E38262_F319_scaffold_4 3023 3383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7408939..7410017) /note="source:CACAO_M_E33865_F33_scaffold_4 363 1461" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7410024..7411484 /note="source:CACAO_M_E49835_F33_scaffold_7 1 1460" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7413197..7414363) /note="source:CACAO_M_E49857_F85_scaffold_7 19880 21045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7414403..7415176) /note="source:CACAO_M_S_E38262_F319_scaffold_4 8132 8911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7415160..7416490 /note="source:CACAO_M_E44899_F328_scaffold_6 5078 6420" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7416343..7417046) /note="source:CACAO_M_S_E38262_F319_scaffold_4 6235 6978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7417011..7417095 /note="source:INTACT904F_F49_scaffold_6-int 13551 13634" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7425384..7425457 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3169 3232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7425572..7428084) /note="source:CACAO_M_E49559_F88_scaffold_7 6494 9076" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7427954..7428116 /note="source:CACAO_M_E14347_F12_scaffold_3 16380 16532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7430508..7430854) /note="source:INTACT26_F13_scaffold_9-int 3514 3850" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7430856..7433756) /note="source:CACAO_M_E53098_F7_scaffold_8 56 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7433753..7436552) /note="source:CACAO_M_S_E64608_F12_scaffold_5 10542 13324" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7436617..7437070) /note="source:CACAO_M_E44709_F9_scaffold_6 664 1102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7437054..7437740 /note="source:INTACT904F_F49_scaffold_6-int 13841 14527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7442537..7442749) /note="source:scaffold_1_CACTA_0011 3497 3695" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7442742..7442820) /note="source:scaffold_1_CACTA_0011 3487 3564" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7443250..7444773 /note="source:CACAO_M_E71671_F17_scaffold_10 1 1520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7444764..7450655) /note="source:CACAO_M_E3326_F17_scaffold_1 1 5842" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7445307..7446115) /locus_tag="TCM_027802" /note="dbxref CacaoGD:Thecc1EG027802" mRNA complement(join(7445307..7445856,7446072..7446115)) /locus_tag="TCM_027802" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400062350.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008369t1" /inference="similar to AA sequence:Phytozome:Glyma14g01400.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc8660t1" CDS complement(7445372..7445740) /locus_tag="TCM_027802" /note="paralog of Thecc1EG008369t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26315.1" /db_xref="Phytozome:Glyma14g01400.1" /translation="MVQERIVLGHQVSSKSLEVDKEKIEIIEKLPPPTSVKGIRSFLG HAGFCRRFIRDFYKISKPLCNLLEKDTSFNFDDAGHDAFVELKKRLIFAPIITIPNWN LPFELMYNASDYAVGAILGQ" mobile_element 7451275..7452169 /note="source:CACAO_M_E44351_F22_scaffold_6 978 1869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7452278..7452617 /note="source:INTACT904F_F49_scaffold_6-int 3151 3485" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7452640..7462797 /note="source:INTACT514_F12_scaffold_6-int 1 10149" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7462798..7462918 /note="source:INTACT904F_F49_scaffold_6-int 3498 3606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7463042..7465116 /note="source:INTACT904F_F49_scaffold_6-int 3631 5719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7465113..7466113 /note="source:INTACT904F_F49_scaffold_6-int 8826 9810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7469359..7470147 /note="source:INTACT904F_F49_scaffold_6-int 9800 10596" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7470236..7470321 /note="source:INTACT904F_F49_scaffold_6-int 10594 10678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7470310..7471110 /note="source:INTACT904F_F49_scaffold_6-int 13622 14460" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7471159..7471925) /locus_tag="TCM_027806" /note="dbxref CacaoGD:Thecc1EG027806" mRNA complement(7471159..7471925) /locus_tag="TCM_027806" /product="Nine-cis-epoxycarotenoid dioxygenase 4, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041195t1" /inference="similar to AA sequence:Phytozome:POPTR_0009s15400.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(7471253..7471654) /locus_tag="TCM_027806" /note="paralog of Thecc1EG041195t1" /codon_start=1 /product="Nine-cis-epoxycarotenoid dioxygenase 4, putative" /protein_id="EOY26316.1" /db_xref="Phytozome:POPTR_0009s15400.1" /db_xref="TAIR:AT4G19170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HQJ1" /translation="MSKNLFLNTLNIIDPPLHPSIDPNLVFTGNFAPVSELDPTDCQV TEGELPLSLNGVYIRNGPNSQLQPRRALHLFDGDGMLHSLRLSNGNATYCSRYVKTYK YMLEQDAGFPIIPNFSLVSMVSWMLSDSLWI" mobile_element complement(7473968..7474421) /note="source:INTACT212F_F351_scaffold_3-int 4453 4912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7474417..7474480) /note="source:INTACT296_F13_scaffold_9-int 13738 13801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7474473..7474586 /note="source:INTACT88_F12_scaffold_4-int 12315 12428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7474580..7482072 /note="source:INTACT1421F_F389_scaffold_9-int 773 8268" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7482063..7482179 /note="source:INTACT39F_F22_scaffold_1-int 5585 5700" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7482172..7483313 /note="source:INTACT1421F_F389_scaffold_9-int 773 1929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7483313..7483395) /note="source:CACAO_M_S_E52339_F15_scaffold_5 6379 6461" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7483394..7483504) /note="source:CACAO_M_S_E19200_F389_scaffold_3 276 385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7483505..7486478 /note="source:CACAO_M_E44845_F15_scaffold_6 1 2974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7486479..7486756 /note="source:INTACT1421F_F389_scaffold_9-int 9641 9919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7501413..7501486) /note="source:CACAO_Mutator_E592_scaffold_3 4074 4158" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7506728..7510185 /note="source:CACAO_Mutator_E592_scaffold_3 4032 7637" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7510225..7513516 /note="source:CACAO_Mutator_E592_scaffold_3 7636 11040" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7513534..7522127 /note="source:CACAO_Mutator_E1320_scaffold_6 1 8546" /mobile_element_type="transposon:TIR/Mutator" gene complement(7522288..7524487) /locus_tag="TCM_027810" /note="dbxref CacaoGD:Thecc1EG027810" mRNA complement(7522288..7524487) /locus_tag="TCM_027810" /product="Nine-cis-epoxycarotenoid dioxygenase 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s15430.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041195t1" /inference="similar to AA sequence:Phytozome:POPTR_0009s15400.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2829t1" CDS complement(7522431..7524110) /locus_tag="TCM_027810" /note="paralog of Thecc1EG041195t1" /codon_start=1 /product="Nine-cis-epoxycarotenoid dioxygenase 4" /protein_id="EOY26317.1" /db_xref="Phytozome:POPTR_0009s15400.1" /db_xref="TAIR:AT4G19170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HQJ1" /translation="MMKVTKPCYNVPIPHFQALNDSPTKPKELVTCKLSSSNTNPFLT KTQKIVSLPLSASSLFSTLASIPSFLYASFSKILDPPLQPLVDPRHLYTGNLAPVDEM EPTDCPVIEGKLPLSLKGVYIRNGPNPQIQSPRALLLFDGDGMLHSLRFSNGHATYCC RYVRTYKYKLEGEAGFPLIPNVFSGFFGFGDIVRFLMTTRRIMTGHINLMNGFGVANT GLAFFSDHLFALCESDLPYIINLTQEGDIETLGRWEFEKKLLSNMTAHPKVDLDTKET FAFSWSLSFPHLKFFHFDGNGVKQNEVPIFSINQPCFIHDFAITKRFAIFHETQLVYS LGKVMTGRGTLVDYEPNKTPRIGIIPKYAINDSEMRWVRVPGFNTIHIINAWENGDDE IVFMASNIICVTNIFNKTVDVSLEKVKINIKTGDVSRKIISPRNLEFGSINPSYVGRK TRYAYLGVLEEVPKMSGLVKIDLETGREVARRFYGPGCFGGEPLFVTKDMENIHSDED DGYVMNYVHDEKANESKFIIMDAKSPELDIVAVVKLPSRVPYGFHGLFFSM" gene 7524256..7528605 /locus_tag="TCM_027811" /note="dbxref CacaoGD:Thecc1EG027811" mRNA join(7524256..7524411,7525696..7525933,7527073..7527162, 7527428..7527449,7527800..7528233,7528316..7528605) /locus_tag="TCM_027811" /product="Serine-threonine protein kinase" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030543t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400049477" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(7525831..7525933,7527073..7527162,7527428..7527449, 7527800..7528233,7528316..7528575) /locus_tag="TCM_027811" /note="paralog of Thecc1EG030543t1" /codon_start=1 /product="Serine-threonine protein kinase" /protein_id="EOY26318.1" /db_xref="Phytozome:PGSC0003DMP400049477" /db_xref="TAIR:AT5G63930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SWC8" /translation="MLDYYPSIVSMPAGALGVVIVIKYQTNVSAQSNFGVNSISQVKF HQQSKACLFLCFLICFNNLTGTFYNDSPWIGVTCGSNHQRVITLDLTNMSLIGTIPPH LGNLSFLAHLNIRFNHFHGSLPMELANLSSLEYINFGHHNFSGEIPLWFDSFTQLQRL LLYNNCFSDVIPSSLGSLSNLEELILSYNDLKGQIPTAIGNLSNLKWLYLDNNQLSGQ LPLALFKCQELRILSLFHNALEGCVPQEIKNLTKLSDLYLDTNNLTGMLNKPLYFYFQ LKKFLYFYFEPNKALILLFLATSPYE" mobile_element complement(7529136..7529235) /note="source:CACAO_PIF_E119_scaffold_3 2575 2669" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(7530009..7530063) /note="source:INTACT642F_F365_scaffold_5-int 917 971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7532029..7542138) /note="source:INTACT1391F_F387_scaffold_8-int 2484 20106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7542133..7542308) /note="source:INTACT58_F125_scaffold_5-int 5284 5460" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7542824..7549388 /locus_tag="TCM_027814" /note="dbxref CacaoGD:Thecc1EG027814" mRNA join(7542824..7543217,7543275..7543928,7543994..7545588, 7545700..7545981,7546139..7546353,7546448..7547041, 7549319..7549388) /locus_tag="TCM_027814" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017282t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc273t1" CDS join(7543466..7543928,7543994..7545588,7545700..7545981, 7546139..7546353,7546448..7546898) /locus_tag="TCM_027814" /note="paralog of Thecc1EG017282t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26319.1" /translation="MTTSGSNVPEPVPEGRETRASRRGKSCSRDLISALDARMSRVEV AVGDIRDRLDVQEEHVEELNGQDEELKGEVQEMVREMLENVAERNSQLESVVEIMQRE LEDLRAEVRAARAEGGYEAAARPEVRLEVPKPKEFCGKRDAKEIDNFLWGLSSDTALL WWRRRCDDRLGGALVRTWVDFQCELRKQFYPEYAMDEARGKLRRLVQRGDVREYVREF SDLALQVGDLGEREALFTFMDGLKPWAKQELQRRGVQDLTCAMAVAEGLIDYSCPDKD RTEPTKPRDKGKGWADKGKQSRDEDGGNGKPQSPWKGNSAWKGKPSGSKEEKPKNCFL CEGPHFVRDYPQRAKLAAIASEDEEQQGDETVRLGSMQLGAVRKGGKQAKGLMYADMV VAGQHVEALVDTGASDLFVSEQGAAKLDLKADSAGGWVKTVNSKWVRIKGIAKGIDVQ LGEWHGTEDIEVIQMDDYEVVMGLNFLERIQALLVPHEDSICIVGSKGQCVVPVRRGC AQSTKTLTAIQLAEGEQICAVVRSVEDTPGNIVEAPDEVLEASEHQLGGANPVAGEPS REATPPASSKVRAELLPHIKEGKAPDPIQQPILESAEAEKTKLAHVSDGLGRAKVDRL HEPQHGGLRRLPLKECRDIGGAGHSGTHRTSVSCPPCSTRHAGSRESSMTRRGSAAAR PRWGNIDTRARGRVSRDESAHGQKSRRGAQLEHPRARRALETAKGPRVSEGSVGEVLA KDPGRPAPLVGKVSSVRQEGLPHVLTFHPTKAERAEGPNEWDAQEAQSGARRHRNPLG AQVGKVSMQASRMVAQGARMDSAGLTDGVGLADSAGGAQRTLTAREGLVRAHMSEDAV SLGGGGYHGARFRPVDGAGRCGGVMEHGGVSLGVGPPWGVPGRRKLLARVLETGPWVS QPAQLQADSPHSPDSQSVRGPEQPLRPAPRQPAWCGPSTPALHYSTSAACPAQQCPNF GTFPPKAIPSAALAFEGNFGDFGGKTQYK" mobile_element 7547354..7549938 /note="source:INTACT556_F252_scaffold_2-int 12387 14892" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7550184..7550438) /note="source:INTACT554_F250_scaffold_7-int 16840 17084" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7550869..7552483 /note="source:INTACT444_F216_scaffold_4-int 1329 2889" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7551737..7558595 /locus_tag="TCM_027815" /note="dbxref CacaoGD:Thecc1EG027815" mRNA join(7551737..7551955,7552785..7552919,7553592..7553663, 7553951..7554094,7554636..7554678,7554782..7554823, 7555526..7555617,7556859..7557231,7557310..7558126, 7558216..7558595) /locus_tag="TCM_027815" /product="Receptor like protein 43" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030546t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400025936" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(7551916..7551955,7552785..7552919,7553592..7553663, 7553951..7554094,7554636..7554678,7554782..7554823, 7555526..7555617,7556859..7557231,7557310) /locus_tag="TCM_027815" /note="paralog of Thecc1EG030546t1" /codon_start=1 /product="Receptor like protein 43" /protein_id="EOY26320.1" /db_xref="Phytozome:PGSC0003DMP400025936" /db_xref="TAIR:AT3G28890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LJW7" /translation="MTLMTGFIRRICEGQLLFKCQELEYISLSQNALEGSVPQQIENL TKLIVLYLNHNNLTGGIPSIIESLHFLKFLDLSFNNLTGQLPSALFKCQELEILSLSG NVLEGSVPQEVGNLTKLSELQLYTNNLTGPYSYSNLNLSILKWSTSINSIQLPRVKRG ELNFSSKIPSIIGSLPFLMFLDLSFNNLTGRLPPLQPSLRGLSVAQNNLIGEIPSSIC NMSSLKYYFILSKNKFHGIIPKCLGDLSNSIEFMDLSMNSFHGKIPGNFHKSCLLRCF FINHNQLEGPLPRSLVNCSKLELLDVANNNLNDTFPN" gene 7561128..7567032 /locus_tag="TCM_027816" /note="dbxref CacaoGD:Thecc1EG027816" mRNA join(7561128..7561870,7566920..7567032) /locus_tag="TCM_027816" /product="Zinc finger-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027817t1" /inference="similar to AA sequence:ricco:29648.m001998" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage" CDS 7561189..7561836 /locus_tag="TCM_027816" /note="dbxref ricco:29648.m001998; paralog of Thecc1EG027817t1" /codon_start=1 /product="Zinc finger-like protein" /protein_id="EOY26321.1" /translation="MDDSGFRYFYQTREGELEGDQIPEDYELEVVDPDLQGRFRCCHA LIDREQPDSLQVVAILEQKLFHQRCYIPSGQPVPELVQINCRCDILNFTESLLRDERN ANRSKFLIIVMFGPLTGCDDDAEIEIEEETETAEDTMDVEVGFVPASKSAIEDLENVS GLGCNDCVICLGNFATEKEAKRMPCGHVFHGGCIVRWQEKSHLCTLCRYAMPLDR" gene 7562294..7570057 /locus_tag="TCM_027817" /note="dbxref CacaoGD:Thecc1EG027817" mRNA join(7562294..7562441,7564340..7564761,7567288..7568185, 7569896..7570057) /locus_tag="TCM_027817" /product="Zinc finger-like protein" /inference="alignment:exonerate- protein:2:ricco:29648.m001998" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027816t1" /inference="similar to AA sequence:ricco:29648.m001998" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS join(7564418..7564761,7567288..7567906) /locus_tag="TCM_027817" /note="dbxref ricco:29648.m001998; paralog of Thecc1EG027816t1" /codon_start=1 /product="Zinc finger-like protein" /protein_id="EOY26322.1" /translation="MPWMILVSHTFSKQWRVNFDGDRIPEDNELEVVDPSLEGRYRCC HALIDLEQPDSLKVTTRLEQKLFHQRCFIPSGRPVPELVQLDCECDTLNFSEFLVKDE GNVNRSKFLIIGMQGELEGDQIPEDYELEVVDPDLQGRFRCCHALIDREQPDSLQVVT ILEQKLFHQHSYIPSGQPVPELIQTSCRCDILNFTESLLRDECNANRSKFLIIVMFGP LAGCNDDEIELQEEIEIDTAGDRMDVEVNEHRFVPASKSAIEALENVCWLGDNECVIC LGNFAKEEEAKRMPCGHVFHGGCIVRWLEKSHLCPLCRYAMPLD" mobile_element complement(7570058..7570542) /note="source:scaffold_1_CACTA_0009 13301 13829" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7570494..7573317) /note="source:CACAO_Mutator_E1998_scaffold_9 7231 10108" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7573318..7576418 /note="source:CACAO_M_E44846_F15_scaffold_6 1 3101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7576419..7577156) /note="source:scaffold_1_CACTA_0009 9544 10292" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7577751..7577798) /note="source:CACAO_Mutator_E1998_scaffold_9 6459 6506" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(7578211..7578422) /note="source:CACAO_Mutator_E1998_scaffold_9 6249 6459" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(7578440..7578530) /note="source:CACAO_Mutator_E1998_scaffold_9 6249 6339" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(7580006..7580421) /note="source:CACAO_on_S_E176_scaffold_5 3468 3871" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7580425..7581245 /note="source:CACAO_M_E58324_F9_scaffold_9 7667 8534" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7584276..7585453) /note="source:INTACT167_F5_scaffold_2-int 4544 5691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7585461..7585738) /note="source:CACAO_M_E58877_F5_scaffold_9 20416 20736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7592375..7593590) /note="source:CACAO_M_E12044_F76_scaffold_2 13464 14695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7593691..7594573) /note="source:INTACT700_F304_scaffold_7-int 8450 9333" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7594674..7594869) /note="source:CACAO_M_E58877_F5_scaffold_9 13304 13499" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7594971..7595397) /note="source:INTACT700_F304_scaffold_7-int 7742 8168" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7598634..7599420) /note="source:CACAO_M_E58877_F5_scaffold_9 8022 8873" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7599224..7600537 /locus_tag="TCM_027821" /note="dbxref CacaoGD:Thecc1EG027821" mRNA 7599224..7600537 /locus_tag="TCM_027821" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027819t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS 7599359..7599997 /locus_tag="TCM_027821" /note="paralog of Thecc1EG027819t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26323.1" /translation="MRGRNLQQKIPAATQKIHKRNRKIWRKGKEHRTEEERERSGGWR GIRSENDAVPATVRIHAARRSSPAEKEPDHRRRQICRWKEEPIRDNCDXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXPPDLPLEGRADPGQLRRHRLGKSTVRVRRREISC RVTAKGEFAGVRGRNPAEEECREKLESLWVERESEGKKWEEKKEKRGFIVRV" mobile_element complement(7599901..7600221) /note="source:CACAO_M_E12044_F76_scaffold_2 20252 20572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7600517..7601140) /note="source:CACAO_M_E58877_F5_scaffold_9 18813 19317" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7600584..7616877 /locus_tag="TCM_027822" /note="dbxref CacaoGD:Thecc1EG027822" mRNA join(7600584..7600970,7606177..7606237,7609984..7610389, 7610688..7611091,7611208..7611330,7611418..7611545, 7615306..7615519,7615651..7615882,7616121..7616271, 7616436..7616877) /locus_tag="TCM_027822" /product="Serine-threonine protein kinase, plant-type, putative" /inference="alignment:exonerate- protein:2:frave:gene31628.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046330t1" /inference="similar to AA sequence:ricco:29769.m000465" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" mobile_element complement(7601487..7601937) /note="source:CACAO_M_E58877_F5_scaffold_9 17822 18259" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7601933..7602808 /note="source:CACAO_M_E43344_F106_scaffold_5 1183 2069" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7605572..7605677 /note="source:scaffold_5_CACTA_0607 9985 10093" /mobile_element_type="transposon:TIR/CACTA" CDS join(7610028..7610389,7610688..7611091,7611208..7611330, 7611418..7611545,7615306..7615519,7615651..7615882, 7616121..7616271,7616436..7616747) /locus_tag="TCM_027822" /note="dbxref ricco:29769.m000465; paralog of Thecc1EG046330t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY26324.1" /db_xref="TAIR:AT1G70520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SJM8" /translation="MQLLICISLTVIWCLLELVASDPQTFLLNQGCSQFNVTSNSDFS RNLNATLTELRGQLENNMFFAVAQDATGSNPVYAMVQCRNYMSKKDCLSCFTTASSQI RNCSAANGARVIYDGCFLRYESNMFYQQSTQIGHVGICGNRTASQQTVFETTVESLLG DLVEATPRIDSFFGATKKEVVGVNGNVTVYAVAQCVETIDNRGCKECLQVAYANIQRC PPDSGGRAVDTGCFLRYSDLPFFGANNTIDITPFLKSRDSTKKKAIIGGLVGGGGLLL LLTIFFVWIKTSRKKKAVPQGDIEGPPELQGPLSYTYKELNFATTNFSEENKLGEGGF GEVYKGILKNGRVVAVKKLAISKSERVKTEFDTEVKLISNVHHRNLVRLIGCCSKGPE LLLVYQYMANGSLDKHLFGEGHGSLNWKQRFDIILGTAKGLAYLHEEFHACIIHRDIK PGNILLDRDFQPKIADFGLVRLLPEDQTHLSTKFAGTFGYTAPEYAIHGQLSEKVDTY SFGVVVLEIISGQKNTDTSLDPTAEFLLKRAWRLYQDDMATEIVDRSLDPTGYNLEDM KRIIQIAFLCTQSSAALRPTMSEVVAMLKTMSSLEPRQPTRPAFIDSERRIVPEDRST STASSNATNSISQVSGR" mobile_element 7619321..7619522 /note="source:scaffold_4_CACTA_0482 4495 4698" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7619898..7619935 /note="source:scaffold_4_CACTA_0482 5006 5043" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7619962..7620239 /note="source:scaffold_4_CACTA_0482 5284 5566" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7620240..7623227 /note="source:CACAO_M_E44848_F172_scaffold_6 1 2988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7623228..7623570 /note="source:scaffold_4_CACTA_0482 5562 5901" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7623747..7623853 /note="source:scaffold_8_CACTA_0860 821 927" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7625311..7626207) /note="source:INTACT222_F33_scaffold_7-int 4365 5219" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7626449..7627949) /note="source:CACAO_M_S_E5657_F17_scaffold_2 1 1531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7633322..7633489) /note="source:scaffold_8_CACTA_0860 988 1155" /mobile_element_type="transposon:TIR/CACTA" gene 7636344..7637966 /locus_tag="TCM_027823" /note="dbxref CacaoGD:Thecc1EG027823" mRNA join(7636344..7636911,7637445..7637966) /locus_tag="TCM_027823" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaB_g17397t00001" mRNA join(7636365..7636911,7637108..7637193,7637445..7637469) /locus_tag="TCM_027823" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1061t6; inference alignment:Newbler:10:TSA:cgbaP2_g03083t00001; inference alignment:Newbler:10:TSA:cgbaB_g17397t00001" mRNA join(7636365..7636911,7637405..7637469) /locus_tag="TCM_027823" /product="Uncharacterized protein isoform 3" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1061t4; inference alignment:Newbler:10:TSA:cgbaP2_g03083t00001; inference alignment:Newbler:10:TSA:cgbaB_g17397t00001" CDS join(7636622..7636911,7637445..7637487) /locus_tag="TCM_027823" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY26325.1" /translation="MEELKNGHVSPSSSPPTPPSPLPISVGPGNQKYFFSPSPTPSPP FSPSPSSHASAENLPLLHDHNPPAAPAQVTSTFSLDRKDPDELEDKSSCLKDLLEWLV QKCCSCCS" CDS join(7636622..7636911,7637405..7637408) /locus_tag="TCM_027823" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY26327.1" /translation="MEELKNGHVSPSSSPPTPPSPLPISVGPGNQKYFFSPSPTPSPP FSPSPSSHASAENLPLLHDHNPPAAPAQVTSTFSLDRKDPDELEDKSSCLKDL" CDS join(7636622..7636911,7637108..7637132) /locus_tag="TCM_027823" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY26326.1" /translation="MEELKNGHVSPSSSPPTPPSPLPISVGPGNQKYFFSPSPTPSPP FSPSPSSHASAENLPLLHDHNPPAAPAQVTSTFSLDRKDPDELEDKSSCLKDLFLLHP GF" gene complement(7638028..7646412) /locus_tag="TCM_027824" /note="dbxref CacaoGD:Thecc1EG027824" mRNA complement(join(7638028..7638776,7638987..7639047, 7639732..7639785,7641680..7641883,7642842..7642895, 7643216..7643515,7644367..7644431,7644523..7644630, 7645160..7645343,7645434..7645558,7645712..7645836, 7645946..7646412)) /locus_tag="TCM_027824" /product="Mediator subunit 8 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029540001" /inference="similar to AA sequence:ricco:30169.m006263" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2450t3" mRNA complement(join(7638277..7638776,7638987..7639047, 7639732..7639785,7641680..7641883,7644367..7644431, 7644523..7644630,7645160..7645343,7645434..7645558, 7645712..7645836,7645946..7646340)) /locus_tag="TCM_027824" /product="Mediator subunit 8 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029540001" /inference="similar to AA sequence:ricco:30169.m006263" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc336t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2450t3" mRNA complement(join(7638277..7638776,7638987..7639047, 7639732..7639785,7641680..7641871,7642842..7642895, 7643216..7643515,7644367..7644431,7644523..7644630, 7645160..7645343,7645434..7645558,7645712..7645836, 7645946..7646340)) /locus_tag="TCM_027824" /product="Mediator subunit 8 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029540001" /inference="similar to AA sequence:ricco:30169.m006263" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc346t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2450t3" CDS complement(join(7638577..7638776,7638987..7639047, 7639732..7639785,7641680..7641883,7644367..7644431, 7644523..7644630,7645160..7645343,7645434..7645558, 7645712..7645836,7645946..7646154)) /locus_tag="TCM_027824" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30169.m006263" /codon_start=1 /product="Mediator subunit 8 isoform 3" /protein_id="EOY26330.1" /db_xref="TAIR:AT2G03070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SS00" /translation="MEGMIQDPSQQQQAQQKNQVVAGAERLNQAVQQQLNLESLKTRA ISLFKAISRILEDFDAYSRTNTTPKWLDILGQYSMVNLELFNIVDEIKKVSKAFVVHP KNVNAENASILPVMLSSKLLPEMETEDNLKREQLLQGMQNLPIPSQIEKLKTRIDMIG AACESAEKVLADTRKAYCFGSRQGPAILPTLDKGQAAKIQEQENLLRAAVNFGEGLHL PADQRQITPSLPLHLADIMPAADGVHSFSDPSGMYMKNTPLTSSNIGSQGSLVQLHGQ MQFSQPLAHQQYQGRQLPPGHVQHGIGQSQLNQGNQLGRHLSQFSSPANSALYNAAQG TPSTQMIPNMSATMPSQSLLPRMQFGLPGGNPQRSHASQILTDQMFNMGSGPGGMMPM QPQQQQQQQQHGSQGAFSNMPTAQNLQSNMVALQNNPQSHPNFAQQRQQGQQ" CDS complement(join(7638577..7638776,7638987..7639047, 7639732..7639785,7641680..7641871,7642842..7642895, 7643216..7643515,7644367..7644431,7644523..7644630, 7645160..7645343,7645434..7645558,7645712..7645836, 7645946..7646154)) /locus_tag="TCM_027824" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006263" /codon_start=1 /product="Mediator subunit 8 isoform 2" /protein_id="EOY26329.1" /db_xref="TAIR:AT2G03070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SS00" /translation="MEGMIQDPSQQQQAQQKNQVVAGAERLNQAVQQQLNLESLKTRA ISLFKAISRILEDFDAYSRTNTTPKWLDILGQYSMVNLELFNIVDEIKKVSKAFVVHP KNVNAENASILPVMLSSKLLPEMETEDNLKREQLLQGMQNLPIPSQIEKLKTRIDMIG AACESAEKVLADTRKAYCFGSRQGPAILPTLDKGQAAKIQEQENLLRAAVNFGEGLHL PADQRQITPSLPLHLADIMPAADGVHSFSDPSGMYMKNTPLTSSNIGSQGSLVQASGA QLIGRSAASPSAATSATSFDNTTNSPLPYANSPRSGTNMMNTPSPQQQTQQQQQQQQQ QQQQQQQQQQRQKMMQLPQHQLLAQQQFRQSTMQGLGQNQLPLHDLQGQTQQKFQSMQ FSQPLAHQQYQGRQLPPGHVQHGIGQSQLNQGNQLGRHLSQFSSPANSALYNAAQGTP STQMIPNMSATMPSQSLLPRMQFGLPGGNPQRSHASQILTDQMFNMGSGPGGMMPMQP QQQQQQQQHGSQGAFSNMPTAQNLQSNMVALQNNPQSHPNFAQQRQQGQQ" CDS complement(join(7638577..7638776,7638987..7639047, 7639732..7639785,7641680..7641883,7642842..7642895, 7643216..7643515,7644367..7644431,7644523..7644630, 7645160..7645343,7645434..7645558,7645712..7645836, 7645946..7646154)) /locus_tag="TCM_027824" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006263" /codon_start=1 /product="Mediator subunit 8 isoform 1" /protein_id="EOY26328.1" /db_xref="TAIR:AT2G03070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SS00" /translation="MEGMIQDPSQQQQAQQKNQVVAGAERLNQAVQQQLNLESLKTRA ISLFKAISRILEDFDAYSRTNTTPKWLDILGQYSMVNLELFNIVDEIKKVSKAFVVHP KNVNAENASILPVMLSSKLLPEMETEDNLKREQLLQGMQNLPIPSQIEKLKTRIDMIG AACESAEKVLADTRKAYCFGSRQGPAILPTLDKGQAAKIQEQENLLRAAVNFGEGLHL PADQRQITPSLPLHLADIMPAADGVHSFSDPSGMYMKNTPLTSSNIGSQGSLVQASGA QLIGRSAASPSAATSATSFDNTTNSPLPYANSPRSGTNMMNTPSPQQQTQQQQQQQQQ QQQQQQQQQQRQKMMQLPQHQLLAQQQFRQSTMQGLGQNQLPLHDLQGQTQQKFQSLH GQMQFSQPLAHQQYQGRQLPPGHVQHGIGQSQLNQGNQLGRHLSQFSSPANSALYNAA QGTPSTQMIPNMSATMPSQSLLPRMQFGLPGGNPQRSHASQILTDQMFNMGSGPGGMM PMQPQQQQQQQQHGSQGAFSNMPTAQNLQSNMVALQNNPQSHPNFAQQRQQGQQ" gene <7648217..7650061 /locus_tag="TCM_027826" /note="dbxref CacaoGD:Thecc1EG027826" mRNA join(<7648217..7649112,7649488..7649505) /locus_tag="TCM_027826" /product="Serine/arginine repetitive matrix protein 2, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s00650.1" /inference="similar to AA sequence:frave:gene05373" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 0.55 coverage; inference alignment:PASA:2:TSA:puevd3b026912t1a3; inference alignment:Newbler:10:TSA:cgbaB_g00508t00004" CDS <7648217..7648732 /locus_tag="TCM_027826" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene05373" /codon_start=1 /product="Serine/arginine repetitive matrix protein 2, putative isoform 3" /protein_id="EOY26333.1" /db_xref="TAIR:AT1G16840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HV20" /translation="EQGNSYPLSPSQLPLSINRVPPLSPLSPLASPSSLFMARSLSQT VIKLSLVTKPRPSSRLLPLRTLSNQPNHSDPSDPSSDTSSSDPLLQKLEDAIHRIIVR RSAPDWLPFIPGSSYWVPPSTAQSYGLAQLVEKLANPLTPEESMSTTTVRGWPSSEYF IKGKFQLRIAY" mRNA join(7648237..7648703,7649488..7649620,7649739..7650061) /locus_tag="TCM_027826" /product="Serine/arginine repetitive matrix protein 2, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s00650.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s00650.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00508t00004" mRNA join(<7648242..7648703,7649515..7649620,7649739..7650059) /locus_tag="TCM_027826" /product="Serine/arginine repetitive matrix protein 2, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s00650.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s00650.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07560t00001; inference alignment:Newbler:10:TSA:cgbaB_g00508t00004" CDS join(<7648244..7648703,7649515..7649588) /locus_tag="TCM_027826" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Serine/arginine repetitive matrix protein 2, putative isoform 2" /protein_id="EOY26332.1" /db_xref="Phytozome:POPTR_0008s00650.1" /db_xref="TAIR:AT1G78890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HV20" /translation="PSQLPLSINRVPPLSPLSPLASPSSLFMARSLSQTVIKLSLVTK PRPSSRLLPLRTLSNQPNHSDPSDPSSDTSSSDPLLQKLEDAIHRIIVRRSAPDWLPF IPGSSYWVPPSTAQSYGLAQLVEKLANPLTPEESMSTTTVRGWPSSEYFIKGGTPHSV ELNTSSNTASKSEDEEG" CDS join(7648325..7648703,7649488..7649588) /locus_tag="TCM_027826" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Serine/arginine repetitive matrix protein 2, putative isoform 1" /protein_id="EOY26331.1" /db_xref="Phytozome:POPTR_0008s00650.1" /db_xref="TAIR:AT1G78890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HV20" /translation="MARSLSQTVIKLSLVTKPRPSSRLLPLRTLSNQPNHSDPSDPSS DTSSSDPLLQKLEDAIHRIIVRRSAPDWLPFIPGSSYWVPPSTAQSYGLAQLVEKLAN PLTPEESMSTTTVRGWPSSEYFIKEYNVLYDISGGTPHSVELNTSSNTASKSEDEEG" mobile_element 7651384..7653887 /note="source:CACAO_M_E52239_F256_scaffold_7 19813 22449" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7659794..7664365) /note="source:INTACT8_F106_scaffold_3-int 1222 7914" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7663743..7664737 /note="source:CACAO_M_E43672_F60_scaffold_5 15979 16970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7664724..7665490 /note="source:CACAO_M_S_E51722_F106_scaffold_4 4665 5442" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7665489..7666640) /note="source:INTACT8_F106_scaffold_3-int 7247 8397" /mobile_element_type="retrotransposon:LTR/Copia" gene 7668001..7668703 /locus_tag="TCM_027831" /note="dbxref CacaoGD:Thecc1EG027831" mRNA join(7668001..7668346,7668429..7668703) /locus_tag="TCM_027831" /product="To encode a PR protein, Belongs to the plant thionin family with the following members:, putative" /inference="alignment:exonerate- protein:2:ricco:29872.m000535" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028643t1" /inference="similar to AA sequence:ricco:29872.m000539" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01411t00002" CDS join(7668070..7668346,7668429..7668487) /locus_tag="TCM_027831" /note="dbxref ricco:29872.m000539; paralog of Thecc1EG028643t1" /codon_start=1 /product="To encode a PR protein, Belongs to the plant thionin family with the following members:, putative" /protein_id="EOY26334.1" /translation="MEGRGVGSVLMVYLVLGLLVGQSTASFQTCYMGCFIWCVITPNN TVFSCSVKCLKDCIIPSFSFPSGKDTQYFCKLGCATSLCTDLSSKENPGEEKVGSCVD SCSETCAKN" gene complement(7674854..7689191) /locus_tag="TCM_027833" /note="dbxref CacaoGD:Thecc1EG027833" mRNA complement(join(7674854..7675120,7675665..7675922, 7676240..7676352,7677662..7677764,7679607..7679753, 7680305..7680390,7680585..7680907,7689121..7689191)) /locus_tag="TCM_027833" /product="RING/FYVE/PHD zinc finger superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006265" /inference="similar to AA sequence:Phytozome:GSVIVT01029539001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc544t7" mRNA complement(join(7675040..7675120,7675665..7675790, 7676240..7676352,7677662..7677764,7679607..7679753, 7680305..7680390,7680585..7680907,7681574..7681763)) /locus_tag="TCM_027833" /product="RING/FYVE/PHD zinc finger superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006265" /inference="similar to AA sequence:Phytozome:GSVIVT01029539001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc495t11; alternateUTRof:Thecc1EG027833t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc544t7; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc561t11" mRNA complement(join(7675040..7675120,7675665..7675790, 7676240..7676352,7677662..7677764,7679607..7679753, 7680305..7680390,7680585..7680907,7681567..7681763)) /locus_tag="TCM_027833" /product="RING/FYVE/PHD zinc finger superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006265" /inference="similar to AA sequence:Phytozome:GSVIVT01029539001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc495t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc544t7; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc561t11" gene 7675171..7675666 /locus_tag="TCM_027834" /note="dbxref CacaoGD:Thecc1EG027834" mRNA 7675171..7675666 /locus_tag="TCM_027834" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc552t10_C1" CDS 7675445..7675654 /locus_tag="TCM_027834" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26339.1" /translation="MYITTSQLDNYRARGWEQKVRDLSMPCTNDQPLQTDFHIHTRRV THYLGICEKVLVNKKSNTENQLVQR" CDS complement(join(7675698..7675790,7676240..7676352, 7677662..7677764,7679607..7679753,7680305..7680390, 7680585..7680819)) /locus_tag="TCM_027833" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein isoform 2" /protein_id="EOY26336.1" /db_xref="Phytozome:GSVIVT01029539001" /db_xref="TAIR:AT1G50440.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PBF3" /translation="MQLVSNDSQKEDILESEPILCQSDISQRSEECSSSCEITAIGGD SVVVDDDLEDINVDETCHLVNADHPQCRICLDIGGDDLIAPCHCKGTQKYVHRSCLDN WRSTKEGFAFAHCTECRALFILRANVPPDRWWLRLKFQFLVARDHAFIFVIVQLIVAF LGVLVYKFYGEELREMFGYDEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHY HVLAKQELTKEYVVEDREDNKNILELDPSHVTELRMLGLY" CDS complement(join(7675698..7675790,7676240..7676352, 7677662..7677764,7679607..7679753,7680305..7680390, 7680585..7680819)) /locus_tag="TCM_027833" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein isoform 2" /protein_id="EOY26337.1" /db_xref="Phytozome:GSVIVT01029539001" /db_xref="TAIR:AT1G50440.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PBF3" /translation="MQLVSNDSQKEDILESEPILCQSDISQRSEECSSSCEITAIGGD SVVVDDDLEDINVDETCHLVNADHPQCRICLDIGGDDLIAPCHCKGTQKYVHRSCLDN WRSTKEGFAFAHCTECRALFILRANVPPDRWWLRLKFQFLVARDHAFIFVIVQLIVAF LGVLVYKFYGEELREMFGYDEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHY HVLAKQELTKEYVVEDREDNKNILELDPSHVTELRMLGLY" CDS complement(join(7675698..7675922,7676240..7676352, 7677662..7677764,7679607..7679753,7680305..7680390, 7680585..7680819)) /locus_tag="TCM_027833" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein isoform 1" /protein_id="EOY26335.1" /db_xref="Phytozome:GSVIVT01029539001" /db_xref="TAIR:AT1G50440.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PBF3" /translation="MQLVSNDSQKEDILESEPILCQSDISQRSEECSSSCEITAIGGD SVVVDDDLEDINVDETCHLVNADHPQCRICLDIGGDDLIAPCHCKGTQKYVHRSCLDN WRSTKEGFAFAHCTECRALFILRANVPPDRWWLRLKFQFLVARDHAFIFVIVQLIVAF LGVLVYKFYGEELREMFGYDEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHY HVLAKQELTKPSHPPHFKRKDPRQFSLMNLWTLFINVKAQNVYTTSNDGRSQYQEYVV EDREDNKNILELDPSHVTELRMLGLY" mRNA complement(join(<7675767..7675832,7676240..7676352, 7677662..7677764,7679607..7679753,7680305..7680390, 7680585..7680907,7681574..7681763)) /locus_tag="TCM_027833" /product="RING/FYVE/PHD zinc finger superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30169.m006265" /inference="similar to AA sequence:Phytozome:GSVIVT01029539001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc495t4; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc561t11; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc544t7" CDS complement(join(<7675767..7675832,7676240..7676352, 7677662..7677764,7679607..7679753,7680305..7680390, 7680585..7680819)) /locus_tag="TCM_027833" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein isoform 4" /protein_id="EOY26338.1" /db_xref="Phytozome:GSVIVT01029539001" /db_xref="TAIR:AT1G50440.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PBF3" /translation="MQLVSNDSQKEDILESEPILCQSDISQRSEECSSSCEITAIGGD SVVVDDDLEDINVDETCHLVNADHPQCRICLDIGGDDLIAPCHCKGTQKYVHRSCLDN WRSTKEGFAFAHCTECRALFILRANVPPDRWWLRLKFQFLVARDHAFIFVIVQLIVAF LGVLVYKFYGEELREMFGYDEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHY HVLAKQELTKNVYTTSNDGRSQYQEYVVEDRE" gene complement(7677257..7678432) /locus_tag="TCM_027836" /note="dbxref CacaoGD:Thecc1EG027836" mRNA complement(join(7677257..7678049,7678155..7678432)) /locus_tag="TCM_027836" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.19 coverage" CDS complement(join(7677999..7678049,7678155..7678304)) /locus_tag="TCM_027836" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26340.1" /translation="MIFCCFYFEVKPLERTSLLDMVLYSPIILLCAYYSNLRKSFVAC CVAQTWARKNDELEYQRLFEVH" gene 7689308..7696597 /locus_tag="TCM_027838" /note="dbxref CacaoGD:Thecc1EG027838" mRNA join(7689308..7689486,7691958..7692932,7693974..7694129, 7694897..7695108,7695907..7696597) /locus_tag="TCM_027838" /product="Ubiquitin-specific protease family C19-related protein" /inference="alignment:exonerate- protein:2:ricco:30169.m006269" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046831t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s00670.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01196t00001" CDS join(7692036..7692932,7693974..7694129,7694897..7695108, 7695907..7696099) /locus_tag="TCM_027838" /note="paralog of Thecc1EG046831t1" /codon_start=1 /product="Ubiquitin-specific protease family C19-related protein" /protein_id="EOY26341.1" /db_xref="Phytozome:POPTR_0008s00670.1" /db_xref="TAIR:AT1G16860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HV27" /translation="MGSRFPSHKLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKK SGELGKMFDIPMDGSKSRKSGPINNAPSRTGSFGGAASHSGPIMPNAAPRAGYTTSGP GATGGMSGSASVKKSNSGPLNRHGDPVKKSSGPQSGGVTPSGRQNSGPIPPVLPTTGL ITSGPISSGPLNSSGAPRKVSGPLESMGSMKVKGSAVHNQAVTVLSQDDDFSFKRNFP KPILWALILLFVMGFIAGGFILGAVHNAILLIVVVVLFGAVAALFAWNSCWGRTAIMG FIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQKVPRCVYTSTSLYEYRGWDSK AANPTHRRFTWGLRLLERRAVDFYISDFQSGLRALVKTGYGARVTPYVDDSIVIDVNP ANEALSPEFIRWLGERNLSSDDRVMRMKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPE PITTGCQWAKCVFPASLEGIVLRCEDTSNNDAIPV" mobile_element complement(7700601..7707754) /note="source:CACAO_M_E3634_F15_scaffold_1 3603 10732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7705755..7710128 /note="source:CACAO_M_E52239_F256_scaffold_7 13509 17867" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7710127..7711006 /note="source:CACAO_M_E52654_F15_scaffold_7 1968 2853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7711007..7714200) /note="source:INTACT522_F240_scaffold_3-int 534 3716" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7714432..7714834) /note="source:INTACT522_F240_scaffold_3-int 5794 6201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7717616..7717661 /note="source:scaffold_5_CACTA_0596 7017 7062" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7717620..7717665) /note="source:CACAO_M_E14113_F106_scaffold_3 13801 13846" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7717627..7717724 /note="source:CACAO_M_E22186_F143_scaffold_3 9951 10036" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7720879..7722843 /note="source:CACAO_M_S_E19828_F19_scaffold_3 7238 8992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7722839..7724040 /note="source:CACAO_M_S_E19828_F19_scaffold_3 2679 3901" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7728538..7728582 /note="source:CACAO_M_E70891_F369_scaffold_10 1395 1439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7729332..7729399 /note="source:scaffold_5_CACTA_0596 6996 7061" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7729503..7729569 /note="source:CACAO_M_E14113_F106_scaffold_3 13806 13871" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7730235..7735683) /note="source:INTACT740_F9_scaffold_10-int 1 5434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7739341..7747764) /note="source:INTACT8_F106_scaffold_3-int 247 8601" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7747761..7748045 /note="source:CACAO_Again_on_E205_scaffold_9 374 658" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(7749277..7751686) /note="source:CACAO_M_E56982_F143_scaffold_8 286 2686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7749984..7752194 /note="source:CACAO_Again_on_E205_scaffold_9 3475 5701" /mobile_element_type="transposon:TIR/hAT" mobile_element 7753066..7753740 /note="source:CACAO_M_E10278_F15_scaffold_2 8860 9534" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7753741..7754777) /note="source:INTACT1581F_F99_scaffold_9-int 5203 6281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7754123..7754784 /note="source:CACAO_M_E69460_F12_scaffold_9 10104 10765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7754765..7756172) /note="source:INTACT1410F_F15_scaffold_9-int 8812 10219" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7757286..7758020 /note="source:CACAO_M_E4554_F15_scaffold_2 995 1729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7758121..7760613 /note="source:CACAO_M_E5390_F15_scaffold_2 1348 3863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7760716..7763055 /note="source:INTACT139F_F15_scaffold_2-int 3834 6173" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7766040..7766331 /note="source:INTACT139F_F15_scaffold_2-int 9430 9721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7766432..7767958 /note="source:CACAO_M_E53371_F15_scaffold_8 1546 3093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7767959..7768612) /note="source:CACAO_M_E58324_F9_scaffold_9 18465 19113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7771249..7771990) /note="source:CACAO_M_E22265_F82_scaffold_3 1 742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7774395..7775332) /note="source:scaffold_1_CACTA_0028 14802 15734" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7775333..7780088) /note="source:CACAO_M_E33870_F15_scaffold_4 1 4932" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7782580..7789423 /locus_tag="TCM_046830" /note="dbxref CacaoGD:Thecc1EG046830" mRNA join(7782580..7783047,7783127..7783312,7783893..7784122, 7785101..7785271,7785898..7786003,7787508..7787714, 7788850..7788975,7789112..7789423) /locus_tag="TCM_046830" /product="Galactose oxidase/kelch repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001829001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017101t1" /inference="similar to AA sequence:frave:gene05379" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc3t20" CDS join(7782826..7783047,7783127..7783312,7783893..7784122, 7785101..7785271,7785898..7786003,7787508..7787714, 7788850..7788975,7789112..7789150) /locus_tag="TCM_046830" /note="dbxref frave:gene05379; paralog of Thecc1EG017101t1" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein" /protein_id="EOY26342.1" /db_xref="TAIR:AT1G51540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LK31" /translation="MVRQIGKQTSGTARLVLLCVGLLGIGLIADFFWASSARFNSSLS ISNNWSPHSSNAPAFVVPSKQPDQLPSKPKGESVEEKAPVPQRLLAATFADLPAPQLK WEKMAAAPVPRLDGAAIQIKNLLYVFAGYGTIDYVHSHVDIYNFTDNTWGGRFDMPKE MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETNKWRDMPPLPLPRYAPAT QLWRGRLHVMGGSKENRHTPGLEHWSLAVKDGKALEKEWRSEIPIPRGGPHRACVVFK DRLYVIGGQEGDFMAKPGSPIFKCSRRNEVVYGDVYMLDDEMKWKTLPPMPKPDSHIE FAWTIVNNSIVIVGGTTEKHPVTKKMVLVGEVFQFNLDTLKWSVIGKLPFRVKTTLVG YWRGWLYFTSGQRDKGPSDPAPKKVLASFSPAVVCH" gene 7791241..7798158 /locus_tag="TCM_046831" /note="dbxref CacaoGD:Thecc1EG046831" mRNA join(7791241..7791466,7793111..7794087,7795266..7795421, 7796669..7796880,7797505..7798158) /locus_tag="TCM_046831" /product="Ubiquitin-specific protease family C19-related protein" /inference="alignment:exonerate- protein:2:ricco:30169.m006269.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027838t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s00670.1" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01672t00002" CDS join(7793191..7794087,7795266..7795421,7796669..7796880, 7797505..7797697) /locus_tag="TCM_046831" /note="paralog of Thecc1EG027838t1" /codon_start=1 /product="Ubiquitin-specific protease family C19-related protein" /protein_id="EOY26343.1" /db_xref="Phytozome:POPTR_0008s00670.1" /db_xref="TAIR:AT1G16860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HV27" /translation="MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKK SGELGKMFDIPVDGSKSRKSGPINNAPSRTGSFGGAASHSGPILPNAAPRAGYTSSGP GLTGGMSGSASLKKSNSGPLNRHGDPVKKSSGPQSGGVTPSGRQNSGPIPVLPATGLI TSGPISSGPLNSSGAPRKVSGPLESMGSMKVHGSAVAHNQAVTILNQDDEFSFKRNFP KPILWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFGTVAALFAWNSCWGRRAIMG FIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQKVPRCVYTSTSLYEYRGWDSK AANPTHRRFTWGLRLLERRAVDFYISDFQSGLRALVKMGYGARVTPYVDDSIIIDVNP ANETLSPDFIRWLGERNLSSDDRVMRMKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPE PMTTGCRWGKCIFPAGLEGIVLRCEDTSKNDVIPV" gene complement(7799066..7803321) /locus_tag="TCM_027847" /note="dbxref CacaoGD:Thecc1EG027847" mRNA complement(join(7799066..7800458,7802344..7802809, 7802903..7803321)) /locus_tag="TCM_027847" /product="Kelch repeat-containing F-box family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s00690.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029571001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc466t5" mRNA complement(join(7799106..7800458,7802141..7802167, 7802344..7802984)) /locus_tag="TCM_027847" /product="Kelch repeat-containing F-box family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s00690.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029571001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc466t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc466t5" CDS complement(join(7799488..7800458,7802344..7802809, 7802903..7803079)) /locus_tag="TCM_027847" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Kelch repeat-containing F-box family protein isoform 1" /protein_id="EOY26344.1" /db_xref="Phytozome:GSVIVT01029571001" /db_xref="TAIR:AT1G51550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C8K7" /translation="MAKPFLAPPPISFLAAEFTISNSTIHHLTVISNDQSKEKMKKTG TFSLAMNKTQEKLTIQSYYQKQKHTTLAMAEISTTARTSNFNNGSPIINLAPDHLFTI LLLLPIESILSFAMTCKKFRHLASSNSLWESICRRDWGPIAVDALKSSFHGDKDHQLL PWIRLYKQVSQLDSVCCYKLSDPDSDLLLPSPRASHSLDFVSGCLVVFGGGCEGGRHV DDTWAAYVGNNSRRMLKWQKIHSGIPSGRFGHTCVPIDNYLVLFGGINDRGNRHSDTW VGQVAFHENVGISLSWRLLDVGSIAPAPRGAHAACCISNRKMVIHGGIGWNGVRLGDT WVLELSENLCFGTWHEIVSHSSPPARSGHSLTCIGGTRTILFGGRGLGYDVLNDIWLL DVSEDYSKWVQIFYELQNIPAGVSLPRVGHSATCILGGRLLIHGGEDSQRHRKDDFWV LDISAISLESVEPARLSSERLLANMWRRLKAKGYKPKSRSFHRACVDNSGRYLYVYGG MVDGVVDPAESYGLGFDGELFLVELVLQL" CDS complement(join(7799488..7800458,7802344..7802770)) /locus_tag="TCM_027847" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Kelch repeat-containing F-box family protein isoform 2" /protein_id="EOY26345.1" /db_xref="Phytozome:GSVIVT01029571001" /db_xref="TAIR:AT1G51550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C8K7" /translation="MAEISTTARTSNFNNGSPIINLAPDHLFTILLLLPIESILSFAM TCKKFRHLASSNSLWESICRRDWGPIAVDALKSSFHGDKDHQLLPWIRLYKQVSQLDS VCCYKLSDPDSDLLLPSPRASHSLDFVSGCLVVFGGGCEGGRHVDDTWAAYVGNNSRR MLKWQKIHSGIPSGRFGHTCVPIDNYLVLFGGINDRGNRHSDTWVGQVAFHENVGISL SWRLLDVGSIAPAPRGAHAACCISNRKMVIHGGIGWNGVRLGDTWVLELSENLCFGTW HEIVSHSSPPARSGHSLTCIGGTRTILFGGRGLGYDVLNDIWLLDVSEDYSKWVQIFY ELQNIPAGVSLPRVGHSATCILGGRLLIHGGEDSQRHRKDDFWVLDISAISLESVEPA RLSSERLLANMWRRLKAKGYKPKSRSFHRACVDNSGRYLYVYGGMVDGVVDPAESYGL GFDGELFLVELVLQL" gene complement(7806646..7814365) /locus_tag="TCM_027848" /note="dbxref CacaoGD:Thecc1EG027848" mRNA complement(join(7806646..7807139,7807250..7807375, 7807599..7807710,7811725..7811816,7812292..7812369, 7812457..7812536,7812809..7812911,7813055..7813264, 7813896..7814365)) /locus_tag="TCM_027848" /product="Pyridoxamine 5'-phosphate oxidase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029573001" /inference="similar to AA sequence:ricco:29955.m001175" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc170t4" mRNA complement(join(7806733..7807127,7807250..7807375, 7807599..7807710,7811725..7811816,7812292..7812369, 7812457..7812536,7812809..7812911,7813055..7813264, 7813896..7814350)) /locus_tag="TCM_027848" /product="Pyridoxamine 5'-phosphate oxidase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029573001" /inference="similar to AA sequence:ricco:29955.m001175" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc175t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc170t4" CDS complement(join(7807023..7807127,7807250..7807375, 7807599..7807710,7811725..7811816,7812292..7812369, 7812457..7812536,7812809..7812911,7813055..7813264, 7813896..7814186)) /locus_tag="TCM_027848" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29955.m001175" /codon_start=1 /product="Pyridoxamine 5'-phosphate oxidase family protein isoform 2" /protein_id="EOY26347.1" /db_xref="TAIR:AT1G51560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HK45" /translation="MESLSSSVFLSNLRETYPFLNTELPAAAASSSSSCLIKAANKRI GSLKFKSKTSPFDGFRLQALSREVPNEGEDEPQPLTLNNGFRFVSEESVSVSQGDSNH NKSSEKDVDKLIKVEAPFTVPHGSGASGGTRAGLFRTPISGGVQSATSAHGLPRPALA VRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLL ADPRCTLVVQIPGWSGLSNARVTIFGDVYPLPEHQQEWAHKQYIAKHQQGPSQQWGNF YYFRMQNISDIYFIGGFGTVAWVDVNEYEALKPDKIAVDGGEQNLKELNATFSKPLKE LLSIETEVDDAALISIDSKGIDIRVRQGAQRLSFEEGQAVETLEEAKAALWKVIKKGQ VQNLKR" CDS complement(join(7807023..7807139,7807250..7807375, 7807599..7807710,7811725..7811816,7812292..7812369, 7812457..7812536,7812809..7812911,7813055..7813264, 7813896..7814186)) /locus_tag="TCM_027848" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29955.m001175" /codon_start=1 /product="Pyridoxamine 5'-phosphate oxidase family protein isoform 1" /protein_id="EOY26346.1" /db_xref="TAIR:AT1G51560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HK45" /translation="MESLSSSVFLSNLRETYPFLNTELPAAAASSSSSCLIKAANKRI GSLKFKSKTSPFDGFRLQALSREVPNEGEDEPQPLTLNNGFRFVSEESVSVSQGDSNH NKSSEKDVDKLIKVEAPFTVPHGSGASGGTRAGLFRTPISGGVQSATSAHGLPRPALA VRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLL ADPRCTLVVQIPGWSGLSNARVTIFGDVYPLPEHQQEWAHKQYIAKHQQGPSQQWGNF YYFRMQNISDIYFIGGFGTVAWVDVNEYEALKPDKIAVDGGEQNLKELNATFSKPLKE LLSIETEVDDAALISIDSKGIDIRVRQGAQFNIQRLSFEEGQAVETLEEAKAALWKVI KKGQVQNLKR" mRNA complement(join(7807106..7807139,7807250..7807710, 7811725..7811816,7812292..7812369,7812457..7812536, 7812809..7812911,7813055..7813264,7813896..7814350)) /locus_tag="TCM_027848" /product="Pyridoxamine 5'-phosphate oxidase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029573001" /inference="similar to AA sequence:ricco:29955.m001175" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc144t4; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc170t4" CDS complement(join(7807506..7807710,7811725..7811816, 7812292..7812369,7812457..7812536,7812809..7812911, 7813055..7813264,7813896..7814186)) /locus_tag="TCM_027848" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29955.m001175" /codon_start=1 /product="Pyridoxamine 5'-phosphate oxidase family protein isoform 3" /protein_id="EOY26348.1" /db_xref="TAIR:AT1G51560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HK45" /translation="MESLSSSVFLSNLRETYPFLNTELPAAAASSSSSCLIKAANKRI GSLKFKSKTSPFDGFRLQALSREVPNEGEDEPQPLTLNNGFRFVSEESVSVSQGDSNH NKSSEKDVDKLIKVEAPFTVPHGSGASGGTRAGLFRTPISGGVQSATSAHGLPRPALA VRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLL ADPRCTLVVQIPGWSGLSNARVTIFGDVYPLPEHQQEWAHKQYIAKHQQGPSQQWGNF YYFRMQNISDIYFIGGFGTVAWVDVNEYEALKPDKIAVDGGEQNLKVNFLNSQNFGFP LGWYSILFLLYYCSCCCR" mobile_element complement(7821631..7823350) /note="source:INTACT160_F4_scaffold_7-int 12887 14535" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7823421..7823704) /note="source:INTACT160_F4_scaffold_7-int 12526 12808" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7823703..7828387) /note="source:INTACT160_F4_scaffold_7-int 7652 12346" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7828420..7828528 /note="source:CACAO_M_E22722_F42_scaffold_3 7191 7302" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7828503..7829926) /note="source:INTACT160_F4_scaffold_7-int 13549 14939" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7829927..7830599 /note="source:CACAO_M_E56778_F42_scaffold_8 3750 4423" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7831648..7831977 /note="source:CACAO_M_E58440_F42_scaffold_9 1724 2053" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7832464..7833362 /note="source:CACAO_M_E22722_F42_scaffold_3 2560 3458" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7833910..7835809) /note="source:CACAO_M_E85278_F18_scaffold_10 1473 3372" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7841650..7845058 /locus_tag="TCM_027853" /note="dbxref CacaoGD:Thecc1EG027853" mRNA join(7841650..7842497,7843531..7843606,7843891..7844003, 7844108..7845058) /locus_tag="TCM_027853" /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s00710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010822t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s00710.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc676t2" CDS join(7841975..7842497,7843531..7843606,7843891..7844003, 7844108..7844634) /locus_tag="TCM_027853" /note="paralog of Thecc1EG010822t2" /codon_start=1 /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, putative" /protein_id="EOY26349.1" /db_xref="Phytozome:POPTR_0008s00710.1" /db_xref="TAIR:AT1G71070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HK46" /translation="MRMSKISSWLSGYRPWMVVCATTLVLLGGLSRSNNQYEISVTTS KFQKPVRLPYKGYGYPPVLAYWICGTNGDSKKILRLLKAIYHPRNQYLLQLDAGSSEY ERAELAVSVESESVFQAFGNVNVEGKSYAVNRMGSSALAATLHAAALLLKINTDWDWF ITLSASDYPLMSQDDLLHAFTFLPRDLNFIDYTSNAGWKEREEINRIVVDPNLYYQRN TPIYYAVETRKPDAFKIFGGSPWVIVSRFFMEYCVQGWDNIPRKLLMYFTNVAYPLET YFHTVICSSPEFQNTTLDNDLRYIIWRTPRQGEPENLSTSHYDEMVASAAAFAQPIGE GDPLLNKIDEDVLNRLPHKIVPGSWAICQGRNESMRGEELCSTWGDIDAVKPGPKGIK LAAQLSKLAAERRLPPSQCH" mobile_element 7845467..7845786 /note="source:CACAO_M_S_E17000_F33_scaffold_3 925 1244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7845785..7846989) /note="source:CACAO_M_E85004_F325_scaffold_10 1 1203" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7851496..7853113 /locus_tag="TCM_027854" /note="dbxref CacaoGD:Thecc1EG027854" mRNA 7851496..7853113 /locus_tag="TCM_027854" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25830.1" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11549t00001" CDS 7852238..7852540 /locus_tag="TCM_027854" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26350.1" /translation="MREWKKPLGWCYEKSKVCKDGWFGTLGGMEDPRWVSGKKKIYSL YRECYGDDEQRESWLGEPCRRTANREMQRLPNSKQRLLLGIDRKACLHFSFLIFFR" mobile_element 7858388..7859120 /note="source:CACAO_M_E49205_F4_scaffold_6 8551 9284" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7859096..7859790 /note="source:CACAO_M_E49205_F4_scaffold_6 2851 3344" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7861091..7862318) /note="source:CACAO_M_E52967_F60_scaffold_8 8060 9282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7862295..7862436) /note="source:CACAO_M_S_E89512_F60_scaffold_8 348 492" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7862437..7871009 /note="source:INTACT10_F4_scaffold_6-int 1 8573" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7871010..7871463) /note="source:CACAO_M_E52967_F60_scaffold_8 7443 7897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7871464..7871878 /note="source:CACAO_M_E44859_F33_scaffold_6 1 415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7872578..7873726 /note="source:CACAO_M_E44859_F33_scaffold_6 416 1564" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7874101..7874424 /note="source:CACAO_M_E44859_F33_scaffold_6 1565 1888" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7874425..7875399) /note="source:CACAO_M_E3801_F60_scaffold_1 6371 7352" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7875444..7875923) /note="source:CACAO_M_E23991_F4_scaffold_4 9181 9661" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7878198..7878446) /note="source:CACAO_M_E3801_F60_scaffold_1 6127 6376" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7878946..7879442 /note="source:CACAO_M_E44425_F33_scaffold_6 7774 8270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7879687..7879970) /note="source:INTACT901F_F95_scaffold_6-int 11845 12115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7881526..7881926) /note="source:CACAO_M_S_E5860_F197_scaffold_2 11409 11767" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7881695..7882024 /note="source:CACAO_M_E14081_F316_scaffold_3 129 526" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7882406..7882485 /note="source:CACAO_M_S_E122136_F76_scaffold_10 724 805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7882428..7882589) /note="source:CACAO_M_S_E5860_F197_scaffold_2 10886 11034" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7883551..7885555) /note="source:CACAO_M_E59025_F323_scaffold_9 1193 3200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7885959..7887026) /note="source:CACAO_M_E48321_F323_scaffold_6 1 1062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7887027..7887523 /note="source:CACAO_M_S_E122136_F76_scaffold_10 4800 5293" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7888071..7888521) /note="source:INTACT646F_F95_scaffold_5-int 2423 2873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7893943..7897787) /note="source:CACAO_LINE_E_154_scaffold_6 9 3836" /mobile_element_type="retrotransposon:LINE/L1" gene complement(7897466..7900491) /locus_tag="TCM_027856" /note="dbxref CacaoGD:Thecc1EG027856" mRNA complement(join(7897466..7897947,7898391..7898578, 7898654..7898934,7899111..7899291,7899395..7899850, 7900087..7900491)) /locus_tag="TCM_027856" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(7897525..7897947,7898391..7898578, 7898654..7898934,7899111..7899291,7899395..7899850, 7900087..7900282)) /locus_tag="TCM_027856" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26351.1" /translation="MTEEKLSVIPPTRDSITYKDRPTAIFYEDEIQILARPFSNSIIG KFNRMPKLQEIRQEFKGIGLLAKTVGKPLYVDEATVNRTRPSVAQVCMEYDYRQPLVE EVWIVIQNKDTKAVTGEYSQKVEFSRMLNYYNHCCHVGHNVSDCLILASRSNNHKPGD KKAFDLPQGPDNIAASWDRKNTEERPTVTVGEAVVVVKKRKKYEPRGTGETESTMAGV LGSMEKDGNREKNRMEKQGQTKYVNSTPTGKNFSSSVPVDVKEKRESDAVEIRRIQEG QSLVLVMNVDNDEGFSMQLLTTTNESIEGNRELKPSGIQFQANEKSQMNDKSVSGSKI RLLKKPHDPTEVSEGVEKDRRQLLDKATMDVEESSDEYTCSNPVQEKRLVDHMQSPMQ SHAESMNHDLDVHPHVSKRRKSDSSIYSSENWNFLNASEALEGPWMVGGDFNFIVSSA ERLLSAPPHDGSMEDFATTLLNCGLLDVGFEGNNYTWTNNHMFRRLDRVVYNQEWAEC FSYSRVQHLNSDGSDHCLFLISYPNTTHRGPSTFRFLHLWTKHHDFLPFVEWSWKTPM QATGMLAF" mobile_element complement(7900522..7900607) /note="source:CACAO_M_S_E5860_F197_scaffold_2 11497 11592" /mobile_element_type="retrotransposon:LTR/Copia" gene 7901020..7909753 /locus_tag="TCM_027857" /note="dbxref CacaoGD:Thecc1EG027857" mRNA join(7901020..7901840,7903776..7904157,7904284..7904381, 7904512..7904571,7904839..7905093,7905180..7905221, 7906668..7907090,7907252..7907328,7908569..7908680, 7908759..7909753) /locus_tag="TCM_027857" /product="RNA-binding KH domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029591001" /inference="similar to AA sequence:Phytozome:GSVIVT01029591001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15791t1" mRNA join(7901055..7901840,7903776..7904141,7904839..7905093, 7906668..7907057,7907248..7907328,7908569..7908680, 7908759..7909368) /locus_tag="TCM_027857" /product="RNA-binding KH domain-containing protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029591001" /inference="similar to AA sequence:Phytozome:GSVIVT01029591001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2816t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15791t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc353t8" mRNA join(7901055..7901840,7903776..7904141,7904839..7905093, 7906668..7907057,7907252..7907328,7908569..7908680, 7908759..7909368) /locus_tag="TCM_027857" /product="RNA-binding KH domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029591001" /inference="similar to AA sequence:Phytozome:GSVIVT01029591001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2816t5; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15791t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc353t8" CDS join(7901256..7901840,7903776..7904157,7904284..7904381, 7904512..7904571,7904839..7905093,7905180..7905221, 7906668..7907090,7907252..7907328,7908569..7908680, 7908759..7908902) /locus_tag="TCM_027857" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNA-binding KH domain-containing protein, putative isoform 1" /protein_id="EOY26352.1" /db_xref="Phytozome:GSVIVT01029591001" /db_xref="TAIR:AT1G51580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AVR0" /translation="MEKRPPPETIQIRLLCPSAKTGALIGKGGSVIRQLQSLTSTKIR ILDDPFDERIIQIVADSRTLITSNADNPNANAEPNQDSSDDGCNSSSGGGGGAGEEET TSSWSPLQKAVVRVFERIVKGDAADDKDKEKEKESENLVVCCRMLLGFNQAGCLLGRG GRVLEKIGQENGTQIRVLTRDQVPPFAAPGDELLQITGNFLAVKKALFSISSCLQEMH SQVDPYPPWGYTSGLHAADYHSRGYPSNPGHENAVVHNRVGLEEEVAFKLLCQVDKVG SLIGKGGSVIRALQCETGASIKIADTSHDSDERIVVISAREACKLNYSITYVEIINLM NDGLFFKTIRSSTRITNFICVSLILWHIGWFWIMRTGYGTRHAEQRYSPAQDAVIRVH SRIAEIGFEPGAAIVARLLVHSQQIGCLLGKGGHIVTEMRRATGASIRVFPKEQLTKC VGSQNDEVVQLVYSTEAFNFTELLVIGSLQSVQDALFHITGRLRESMFPMKPPFPGIN PPPYLPPFPEMPPPSFRPRHNPASPGPYPSPGGSFHGIDRSVVPSQPLDHQPSFSHGM DHVGPSNLDRVPYPYGGERPGHGPMFDRPSSPGSWTPQVGGVAFECIILAATSGNPRG ISDVGSGFAARNGPPGSGNQAPVLTSTKVEIVIPQIYLCHVYGESNGNLGHIRQISGA NLVIHDPKPGAAEGVVVVSGTSDQLRTAQSLIQAFILCGQTAA" CDS join(7901256..7901840,7903776..7904141,7904839..7905093, 7906668..7907057,7907252..7907328,7908569..7908680, 7908759..7908902) /locus_tag="TCM_027857" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNA-binding KH domain-containing protein, putative isoform 2" /protein_id="EOY26353.1" /db_xref="Phytozome:GSVIVT01029591001" /db_xref="TAIR:AT1G51580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AVR0" /translation="MEKRPPPETIQIRLLCPSAKTGALIGKGGSVIRQLQSLTSTKIR ILDDPFDERIIQIVADSRTLITSNADNPNANAEPNQDSSDDGCNSSSGGGGGAGEEET TSSWSPLQKAVVRVFERIVKGDAADDKDKEKEKESENLVVCCRMLLGFNQAGCLLGRG GRVLEKIGQENGTQIRVLTRDQVPPFAAPGDELLQITGNFLAVKKALFSISSCLQEMH SQVDPYPPWGYTSGLHAADYHSRGYPSNPGHENAVVHNRVGLEEEVAFKLLCQVDKVG SLIGKGGSVIRALQCETGASIKIADTSHDSDERIVVISAREHAEQRYSPAQDAVIRVH SRIAEIGFEPGAAIVARLLVHSQQIGCLLGKGGHIVTEMRRATGASIRVFPKEQLTKC VGSQNDEVVQVIGSLQSVQDALFHITGRLRESMFPMKPPFPGINPPPYLPPFPEMPPP SFRPRHNPASPGPYPSPGGSFHGIDRSVVPSQPLDHQPSFSHGMDHVGPSNLDRVPYP YGGERPGHGPMFDRPSSPGSWTPQAATSGNPRGISDVGSGFAARNGPPGSGNQAPVLT STKVEIVIPQIYLCHVYGESNGNLGHIRQISGANLVIHDPKPGAAEGVVVVSGTSDQL RTAQSLIQAFILCGQTAA" CDS join(7901256..7901840,7903776..7904141,7904839..7905093, 7906668..7907057,7907248..7907274) /locus_tag="TCM_027857" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RNA-binding KH domain-containing protein, putative isoform 3" /protein_id="EOY26354.1" /db_xref="Phytozome:GSVIVT01029591001" /db_xref="TAIR:AT1G51580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AVR0" /translation="MEKRPPPETIQIRLLCPSAKTGALIGKGGSVIRQLQSLTSTKIR ILDDPFDERIIQIVADSRTLITSNADNPNANAEPNQDSSDDGCNSSSGGGGGAGEEET TSSWSPLQKAVVRVFERIVKGDAADDKDKEKEKESENLVVCCRMLLGFNQAGCLLGRG GRVLEKIGQENGTQIRVLTRDQVPPFAAPGDELLQITGNFLAVKKALFSISSCLQEMH SQVDPYPPWGYTSGLHAADYHSRGYPSNPGHENAVVHNRVGLEEEVAFKLLCQVDKVG SLIGKGGSVIRALQCETGASIKIADTSHDSDERIVVISAREHAEQRYSPAQDAVIRVH SRIAEIGFEPGAAIVARLLVHSQQIGCLLGKGGHIVTEMRRATGASIRVFPKEQLTKC VGSQNDEVVQVIGSLQSVQDALFHITGRLRESMFPMKPPFPGINPPPYLPPFPEMPPP SFRPRHNPASPGPYPSPGGSFHGIDRSVVPSQPLDHQPSFSHGMDHVGPSNLDRVPYP YGGERPGHGPMFDRPSSPGSWTPQSGCYLWEP" gene complement(7911657..7921984) /locus_tag="TCM_027858" /note="dbxref CacaoGD:Thecc1EG027858" mRNA complement(join(7911657..7912042,7912160..7912231, 7913281..7913386,7913896..7914027,7918841..7918974, 7919059..7919142,7921532..7921984)) /locus_tag="TCM_027858" /product="ZIM-like 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g23720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007360t1" /inference="similar to AA sequence:Phytozome:Glyma08g23720.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00481t00001" CDS complement(join(7911980..7912042,7912160..7912231, 7913281..7913386,7913896..7914027,7918841..7918974, 7919059..7919142,7921532..7921867)) /locus_tag="TCM_027858" /note="paralog of Thecc1EG007360t1" /codon_start=1 /product="ZIM-like 1" /protein_id="EOY26355.1" /db_xref="Phytozome:Glyma08g23720.1" /db_xref="TAIR:AT1G51600.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1G0" /translation="MDGIHGKNGRMHMGNDVQQPMHHHVHYEHHHHIMNGNGMVDDDD VHHAHHHHHHHDVDDNVGCGEAEGVEAGDLPSDHPGVLSDNQGPDNGDQLTLSFQGQV YVYDSVPPEKVQAVLLLLGGREVPPTMPAIPITTQNNRGLPGTPQRFSVPQRLASLLR FREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPNTDDSVSAASSLGSNQSWGA DGNGSQNQEIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQ TGNSSSLSKNGENVNFEADQVVRITENVSGSS" mobile_element 7918737..7918786 /note="source:CACAO_M_S_E122136_F76_scaffold_10 13649 13699" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7922409..7924148 /note="source:INTACT607_F3_scaffold_4-int 12103 13858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7926869..7928430 /note="source:CACAO_M_E43890_F17_scaffold_5 1 1592" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7928768..7928828 /note="source:CACAO_M_E69236_F12_scaffold_9 784 845" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7928771..7928901) /note="source:CACAO_M_E42514_F40_scaffold_5 2579 2707" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7928948..7931302) /note="source:INTACT639F_F363_scaffold_5-int 2104 4498" /mobile_element_type="retrotransposon:LTR/Copia" gene 7932966..7935183 /locus_tag="TCM_027860" /note="dbxref CacaoGD:Thecc1EG027860" mRNA join(7932966..7933060,7934608..7935183) /locus_tag="TCM_027860" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040301t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 7934752..7935030 /locus_tag="TCM_027860" /note="paralog of Thecc1EG040301t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26356.1" /translation="MMLFDSVMVHSLELLEKALRFHKHYDVAIRGLQGIFEELDVVKI KDNKNRNTNVFTSKNVIEDVASNNHESHPFSHNIIFLDPSHVTMKGCP" mobile_element 7939241..7941719 /note="source:INTACT160_F4_scaffold_7-int 12782 14939" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7941701..7948411 /note="source:INTACT160_F4_scaffold_7-int 8114 14931" /mobile_element_type="retrotransposon:LTR/Copia" gene 7951146..7963376 /locus_tag="TCM_027862" /note="dbxref CacaoGD:Thecc1EG027862" mRNA join(7951146..7951520,7952102..7952149,7952601..7952732, 7953864..7953976,7956777..7956842,7957003..7957174, 7958349..7958438,7958697..7958821,7958932..7958997, 7959838..7959946,7960038..7960136,7960858..7960938, 7961016..7961186,7962491..7962709,7962802..7963376) /locus_tag="TCM_027862" /product="Alpha-mannosidase 1 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05270" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039501t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029601001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2780t4" CDS join(7951362..7951520,7952102..7952149,7952601..7952732, 7953864..7953976,7956777..7956842,7957003..7957174, 7958349..7958438,7958697..7958821,7958932..7958997, 7959838..7959946,7960038..7960136,7960858..7960938, 7961016..7961186,7962491..7962709,7962802..7962822) /locus_tag="TCM_027862" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG039501t1" /codon_start=1 /product="Alpha-mannosidase 1 isoform 1" /protein_id="EOY26357.1" /db_xref="Phytozome:GSVIVT01029601001" /db_xref="TAIR:AT1G51590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H116" /translation="MARSRSSPSSSRFRYCNPSYYLKRPKRLALLLIVFVSATFFVWD RQTLVREHEVEVSMLNDEVLRLQNMLEELKSKVVPDDPIEIQRREKVKEAMIHAWSSY EKYAWGNDELQPQSKNGVNSFGGLGATLIDSLDTLYIMGLDEQFQRAREWVANSLDFN KDYDASVFETTIRVVGGLLSAFDLSGDKVFLEKARDIADRLLPAWDTSTGIPYNIINL ARGNPHNPGWTGGDSILADSGTEQLEFIALSQRTGDPKYQEKVEKVIVALNKTFPADG LLPIYINPDRGTGSYSTITFGAMGDSFYEYLLKVWIQGNKTSSLKIYRDMWETSMKGL LSLIRRSTPSSFAYICEKNGNSLTDKMDELACFAPGMIALGSSGYGPDEAKKFLSLAE ELAWTCYNFYQSTPTKLAGENYFFNSGQDMSVGTSWNILRPETIESLFYLWRLTGNKT YQEWGWNIFQAFEKNSRIESGYVGLKDVNSGVKDNMMQSFFLAETLKYLYLLFSPPTV ISLDEWVFNTEAHPIRIVNHNDADFAKSEGQHKPVARLRVRKMTSQRL" mRNA join(7951491..7951520,7952102..7952149,7952601..7952732, 7953864..7953976,7956777..7956842,7957003..7957174, 7957404..7957481,7958349..7958438,7958697..7958821, 7958932..7958997,7959838..7959946,7960038..7960136, 7960858..7960938,7961016..7961186,7962491..7963274) /locus_tag="TCM_027862" /product="Alpha-mannosidase 1 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene05270" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039501t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029601001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc92t4; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc92t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2780t4" mRNA join(7951491..7951520,7952102..7952149,7952601..7952732, 7953864..7953976,7956777..7956842,7957003..7957174, 7958349..7958438,7958697..7958821,7958932..7958997, 7959838..7959946,7960038..7960136,7960858..7960938, 7961016..7961186,7962582..7963274) /locus_tag="TCM_027862" /product="Alpha-mannosidase 1 isoform 3" /inference="alignment:exonerate-protein:2:frave:gene05270" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039501t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029601001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc90t5; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc92t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2780t4" CDS join(7952114..7952149,7952601..7952732,7953864..7953976, 7956777..7956842,7957003..7957174,7957404..7957481, 7958349..7958438,7958697..7958821,7958932..7958997, 7959838..7959946,7960038..7960136,7960858..7960938, 7961016..7961186,7962491..7962733) /locus_tag="TCM_027862" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG039501t1" /codon_start=1 /product="Alpha-mannosidase 1 isoform 2" /protein_id="EOY26358.1" /db_xref="Phytozome:GSVIVT01029601001" /db_xref="TAIR:AT1G51590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H116" /translation="MLNDEVLRLQNMLEELKSKVVPDDPIEIQRREKVKEAMIHAWSS YEKYAWGNDELQPQSKNGVNSFGGLGATLIDSLDTLYIMGLDEQFQRAREWVANSLDF NKDYDASVFETTIRVVGGLLSAFDLSGDKVFLEKARDIADRLLPAWDTSTGIPYNIIN LARGNPHNPGWTGVCTYVLRCSAKSIKVPCFLCATVFDKGDSILADSGTEQLEFIALS QRTGDPKYQEKVEKVIVALNKTFPADGLLPIYINPDRGTGSYSTITFGAMGDSFYEYL LKVWIQGNKTSSLKIYRDMWETSMKGLLSLIRRSTPSSFAYICEKNGNSLTDKMDELA CFAPGMIALGSSGYGPDEAKKFLSLAEELAWTCYNFYQSTPTKLAGENYFFNSGQDMS VGTSWNILRPETIESLFYLWRLTGNKTYQEWGWNIFQAFEKNSRIESGYVGLKDVNSG VKDNMMQSFFLAETLKYLYLLFSPPTVISLDEWVFNTEAHPIRIVNHNDADFAKSEGQ HKPVARLRVRKAGRLGDN" CDS join(7952114..7952149,7952601..7952732,7953864..7953976, 7956777..7956842,7957003..7957174,7958349..7958438, 7958697..7958821,7958932..7958997,7959838..7959946, 7960038..7960136,7960858..7960938,7961016..7961186, 7962582..7962629) /locus_tag="TCM_027862" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG039501t1" /codon_start=1 /product="Alpha-mannosidase 1 isoform 3" /protein_id="EOY26359.1" /db_xref="Phytozome:GSVIVT01029601001" /db_xref="TAIR:AT1G51590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H116" /translation="MLNDEVLRLQNMLEELKSKVVPDDPIEIQRREKVKEAMIHAWSS YEKYAWGNDELQPQSKNGVNSFGGLGATLIDSLDTLYIMGLDEQFQRAREWVANSLDF NKDYDASVFETTIRVVGGLLSAFDLSGDKVFLEKARDIADRLLPAWDTSTGIPYNIIN LARGNPHNPGWTGGDSILADSGTEQLEFIALSQRTGDPKYQEKVEKVIVALNKTFPAD GLLPIYINPDRGTGSYSTITFGAMGDSFYEYLLKVWIQGNKTSSLKIYRDMWETSMKG LLSLIRRSTPSSFAYICEKNGNSLTDKMDELACFAPGMIALGSSGYGPDEAKKFLSLA EELAWTCYNFYQSTPTKLAGENYFFNSGQDMSVGTSWNILRPETIESLFYLWRLTGNK TYQEWGWNIFQAFEKNSRIESGYVGLKDSSRWMSGYSTQKLTL" mobile_element complement(7957842..7957890) /note="source:scaffold_3_CACTA_0382 1863 1912" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7964359..7964533 /note="source:CACAO_M_E69800_F12_scaffold_9 1220 1403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7964680..7964886 /note="source:CACAO_M_E69800_F12_scaffold_9 2432 2660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7966318..7969317 /note="source:CACAO_M_S_E67413_F7_scaffold_6 1 3000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7972614..7974048) /note="source:CACAO_M_E48538_F49_scaffold_6 1801 3240" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7975132..7977172 /note="source:CACAO_M_S_E15347_F33_scaffold_2 1 2042" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7977161..7977727) /note="source:scaffold_8_CACTA_0858 13150 13717" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7978866..7980147) /note="source:scaffold_8_CACTA_0858 10730 12007" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7980119..7980639) /note="source:CACAO_M_E70362_F33_scaffold_10 383 899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7980629..7980761) /note="source:CACAO_M_S_E4591_F5_scaffold_1 5813 5944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7985837..7987677) /note="source:CACAO_M_E1036_F33_scaffold_1 979 2820" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7987678..7988611 /note="source:CACAO_M_E58911_F33_scaffold_9 2022 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7989693..7993221) /note="source:INTACT506_F233_scaffold_3-int 6598 10104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7993322..7997443) /note="source:INTACT1223F_F374_scaffold_6-int 5045 9143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7995445..7999305 /note="source:CACAO_M_S_E14932_F233_scaffold_2 8544 12369" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7999306..8002509 /note="source:CACAO_M_E44868_F328_scaffold_6 1 3204" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8002452..8002517 /note="source:INTACT453_F4_scaffold_9-int 14128 14194" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8002509..8003100) /note="source:INTACT506_F233_scaffold_3-int 1 600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8004347..8006159 /note="source:CACAO_M_E33870_F15_scaffold_4 1 1811" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8007456..8007784) /note="source:CACAO_M_E59744_F15_scaffold_9 7212 7540" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8013948..8014411) /note="source:INTACT139F_F15_scaffold_2-int 7693 8157" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8021867..8022791) /note="source:CACAO_M_E49195_F17_scaffold_6 8400 9320" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8023739..8024108) /note="source:CACAO_M_E53587_F207_scaffold_8 10231 10600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8026159..8027016 /note="source:CACAO_M_E53587_F207_scaffold_8 19469 20326" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8026398..8038250 /locus_tag="TCM_027864" /note="dbxref CacaoGD:Thecc1EG027864" mRNA join(8026398..8027021,8029031..8029127,8036635..8036702, 8037126..8037390,8038095..8038250) /locus_tag="TCM_027864" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018110t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.63 coverage" CDS join(8026845..8027021,8029031..8029127,8036635..8036660) /locus_tag="TCM_027864" /note="paralog of Thecc1EG018110t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26360.1" /translation="MTYDFFEMRDLITVAHRGDAKVDAKPCEVSIDIRGEECLSRPRG GCHGPDGEFRVVTSWRILVTTRNSHRARDNRRNVPISTYYPECRSKPHSENFIVS" mobile_element 8029039..8032003 /note="source:CACAO_M_S_E5998_F273_scaffold_2 1 2942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8033915..8037246 /note="source:CACAO_M_E44874_F85_scaffold_6 1 3332" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8038293..8042093 /locus_tag="TCM_027865" /note="dbxref CacaoGD:Thecc1EG027865" mRNA join(8038293..8039116,8041212..8041286,8041492..8042093) /locus_tag="TCM_027865" /product="Integral membrane Yip1 family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s18440.1" /inference="similar to AA sequence:TAIR:AT2G18840.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15808t1" CDS join(8038601..8039116,8041212..8041286,8041492..8041752) /locus_tag="TCM_027865" /codon_start=1 /product="Integral membrane Yip1 family protein" /protein_id="EOY26361.1" /db_xref="TAIR:AT2G18840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VH1" /translation="MSNSHSDTIPLHASSQSDIDEIENLINASVQSGPATVLPARPPS PPRASIPVSSSPFIQSNIPPPPPVSSSSSSNQKVPSVPAAPPPPPPVGNSSSIVATGF GPPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFL GLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLD IGALICMLKDNVIVKVIVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVG FLIIAID" mobile_element 8043368..8053518 /note="source:INTACT490_F228_scaffold_6-int 1 10151" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8055209..8055274) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3215 3281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8061541..8063760 /note="source:INTACT118_F5_scaffold_9-int 9412 11638" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8063862..8064472 /note="source:INTACT118_F5_scaffold_9-int 11789 12393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8065045..8065944 /note="source:CACAO_M_E71405_F316_scaffold_10 4789 5664" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8066047..8069212) /note="source:CACAO_M_S_E122077_F328_scaffold_10 4626 7799" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8069214..8075407 /note="source:CACAO_M_S_E86138_F33_scaffold_7 2 6223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8075403..8076465 /note="source:CACAO_M_S_E86138_F33_scaffold_7 1901 2968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8076436..8077845) /note="source:CACAO_M_S_E122077_F328_scaffold_10 3243 4653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8077848..8078311) /note="source:CACAO_M_E52632_F228_scaffold_7 1 465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8079602..8080470) /note="source:CACAO_M_S_E84261_F4_scaffold_6 993 1860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8080470..8080735) /note="source:scaffold_9_CACTA_0930 1 268" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8084574..8089565) /note="source:CACAO_M_S_E4534_F4_scaffold_1 5033 10069" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8089561..8090318 /note="source:INTACT118_F5_scaffold_9-int 2753 3526" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8090435..8091661) /note="source:INTACT280_F60_scaffold_5-int 9228 10496" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8091611..8091736 /note="source:CACAO_M_S_E99244_F4_scaffold_9 5125 5227" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8091740..8094694 /note="source:CACAO_M_E44883_F245_scaffold_6 1 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8094709..8094747 /note="source:CACAO_M_S_E5046_F335_scaffold_1 1614 1652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8095434..8098299) /note="source:CACAO_M_S_E84261_F4_scaffold_6 2 2865" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8099861..8102277) /note="source:CACAO_M_E13604_F90_scaffold_3 4586 7015" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8102797..8102857 /note="source:CACAO_M_S_E5046_F335_scaffold_1 2117 2178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8103336..8103415 /note="source:CACAO_M_E43348_F5_scaffold_5 20571 20651" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8106927..8107042) /note="source:CACAO_M_E43348_F5_scaffold_5 28021 28140" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8109517..8117466 /locus_tag="TCM_027868" /note="dbxref CacaoGD:Thecc1EG027868" mRNA join(8109517..8110128,8110214..8110268,8110771..8110903, 8111044..8111099,8112178..8112292,8112378..8112435, 8112547..8112665,8116175..8116243,8116890..8116950, 8117023..8117466) /locus_tag="TCM_027868" /product="Cation efflux family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25780.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s25780.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc582t11; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2654t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc582t12" mRNA join(8109520..8110128,8110214..8110268,8110771..8110903, 8111044..8111099,8112178..8112292,8112378..8112435, 8112547..8112665,8114076..8114195,8115467..8115568, 8115658..8115730,8116176..8116243,8116890..8116950, 8117023..8117451) /locus_tag="TCM_027868" /product="Cation efflux family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25780.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s25780.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2654t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2654t3" mRNA join(8109525..8110128,8110214..8110268,8110771..8110903, 8111044..8111099,8112178..8112292,8112378..8112435, 8112547..8112665,8114076..8114195,8115467..8115568, 8115658..8115730,8115943..8116174) /locus_tag="TCM_027868" /product="Cation efflux family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25780.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s25780.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc595t3_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2654t3; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc534t6_C2" CDS join(8109834..8110128,8110214..8110268,8110771..8110903, 8111044..8111099,8112178..8112292,8112378..8112435, 8112547..8112665,8114076..8114195,8115467..8115568, 8115658..8115730,8116176..8116243,8116890..8116950, 8117023..8117147) /locus_tag="TCM_027868" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cation efflux family protein isoform 1" /protein_id="EOY26362.1" /db_xref="Phytozome:POPTR_0010s25780.1" /db_xref="TAIR:AT1G51610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HV32" /translation="MQTTCRVVSRLLGSSKYTCSSVSINSSLSNLSQLVFLEPSLIPH NQGFFQFRSYTNIGPVRGFSSVNSSRRFVLLGFVLPENDPIIYQHHRQFYSPYRSFFT RAKQIKKIEINDQHIQRAVTTALWCNFLVFSLKFGVWLATSSHVMLAEMVHSIADFAN QALLAYGLSSSRRAPDAMHPYGYSKERFVWSLISAVGIFCLGSGATIVHGVQNLWTSH PPANIEYAALVIGGSFMIEGASLVVAIQAVKKGAAAEGMKVRDYVWRGHDPTSVAVMT EDGAAVTGLAIAAASLVAVNITGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRA IDEHDMQKVLHFLKNDPVVDALYDCKSEVIGPGFFRFKAEIDFNGVVVVQNYLHRTGR EEWARQFREAAKEKDDSALLKIMSNYGEEVVTALGSEVDRLEKEIQELVPGIRHVDIE AHNPIDLSS" CDS join(8109834..8110128,8110214..8110268,8110771..8110903, 8111044..8111099,8112178..8112292,8112378..8112435, 8112547..8112665,8116175..8116243,8116890..8116950, 8117023..8117147) /locus_tag="TCM_027868" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Cation efflux family protein isoform 3" /protein_id="EOY26364.1" /db_xref="Phytozome:POPTR_0010s25780.1" /db_xref="TAIR:AT1G51610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HV32" /translation="MQTTCRVVSRLLGSSKYTCSSVSINSSLSNLSQLVFLEPSLIPH NQGFFQFRSYTNIGPVRGFSSVNSSRRFVLLGFVLPENDPIIYQHHRQFYSPYRSFFT RAKQIKKIEINDQHIQRAVTTALWCNFLVFSLKFGVWLATSSHVMLAEMVHSIADFAN QALLAYGLSSSRRAPDAMHPYGYSKERFVWSLISAVGIFCLGSGATIVHGVQNLWTSH PPANIEYAALVIGGSFMIEGASLVVAIQAVKKGAAAEGMKVRDYVWRGHDPTSVAVMT EDFNGVVVVQNYLHRTGREEWARQFREAAKEKDDSALLKIMSNYGEEVVTALGSEVDR LEKEIQELVPGIRHVDIEAHNPIDLSS" CDS join(8109834..8110128,8110214..8110268,8110771..8110903, 8111044..8111099,8112178..8112292,8112378..8112435, 8112547..8112665,8114076..8114195,8115467..8115568, 8115658..8115730,8115943..8115950) /locus_tag="TCM_027868" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cation efflux family protein isoform 2" /protein_id="EOY26363.1" /db_xref="Phytozome:POPTR_0010s25780.1" /db_xref="TAIR:AT1G51610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HV32" /translation="MQTTCRVVSRLLGSSKYTCSSVSINSSLSNLSQLVFLEPSLIPH NQGFFQFRSYTNIGPVRGFSSVNSSRRFVLLGFVLPENDPIIYQHHRQFYSPYRSFFT RAKQIKKIEINDQHIQRAVTTALWCNFLVFSLKFGVWLATSSHVMLAEMVHSIADFAN QALLAYGLSSSRRAPDAMHPYGYSKERFVWSLISAVGIFCLGSGATIVHGVQNLWTSH PPANIEYAALVIGGSFMIEGASLVVAIQAVKKGAAAEGMKVRDYVWRGHDPTSVAVMT EDGAAVTGLAIAAASLVAVNITGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRA IDEHDMQKVLHFLKNDPVVDALYDCKSEVIGPGFFRFKAEIEL" mobile_element 8121065..8129146 /note="source:INTACT117_F146_scaffold_2-int 1772 8237" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8129133..8129790 /note="source:INTACT117_F146_scaffold_2-int 7841 8494" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8129892..8131413 /note="source:INTACT117_F146_scaffold_2-int 8536 10028" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8131514..8132769 /note="source:INTACT117_F146_scaffold_2-int 10048 11022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8133220..8135686) /note="source:CACAO_M_E33494_F244_scaffold_4 260 2797" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8133570..8138035 /note="source:INTACT615_F273_scaffold_2-int 414 4869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8138029..8138577 /note="source:CACAO_M_E73015_F273_scaffold_10 4912 5476" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8138554..8141106) /note="source:CACAO_M_E69760_F9_scaffold_9 6707 9235" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8143759..8143844 /note="source:CACAO_M_E3884_F22_scaffold_1 13080 13172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8144034..8144079 /note="source:CACAO_M_E3884_F22_scaffold_1 13236 13280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8145037..8154165) /note="source:CACAO_M_S_E102025_F12_scaffold_9 1093 9904" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8154166..8155201 /note="source:CACAO_M_E44720_F256_scaffold_6 1 1004" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8156276..8205245) /locus_tag="TCM_027875" /note="dbxref CacaoGD:Thecc1EG027875" mRNA complement(join(8156276..8156494,8159339..8159937, 8169484..8170409,8171001..8171236,8171666..8171885, 8172939..8173075,8173167..8173322,8173414..8173901, 8174352..8174423,8174670..8174744,8174947..8175015, 8175122..8175193,8175303..8175374,8175749..8175823, 8175920..8176081,8176330..8176401,8176497..8176571, 8176972..8177043,8177140..8177260,8177834..8178062, 8205124..8205245)) /locus_tag="TCM_027875" /product="Leucine-rich repeat protein kinase family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30063.m001423" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027894t1" /inference="similar to AA sequence:ricco:30063.m001423" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:PASA:2:TSA:puevd3b026956t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2571t3" mRNA complement(join(8156276..8156494,8159339..8159937, 8169484..8170409,8171001..8171236,8171666..8171885, 8172939..8173075,8173167..8173322,8173414..8173901, 8174081..8174218,8174352..8174423,8174670..8174744, 8174947..8175015,8175122..8175193,8175303..8175374, 8175749..8175823,8175920..8176081,8176330..8176401, 8176497..8176571,8176972..8177043,8177140..8177260, 8177834..8178062,8205124..8205245)) /locus_tag="TCM_027875" /product="Leucine-rich repeat protein kinase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30063.m001423" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027894t1" /inference="similar to AA sequence:ricco:30063.m001423" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2571t3" mobile_element complement(8159015..8160732) /note="source:INTACT710_F62_scaffold_3-int 749 2460" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8162124..8162339 /note="source:CACAO_M_E3935_F390_scaffold_1 15748 15955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8163354..8163475) /note="source:INTACT609_F90_scaffold_2-int 7401 7521" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8163477..8163691 /note="source:CACAO_Mutator_E1149_scaffold_5 6097 6306" /mobile_element_type="transposon:TIR/Mutator" mobile_element 8163673..8164286 /note="source:CACAO_M_S_E84376_F22_scaffold_6 15580 16198" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8164159..8164452 /note="source:CACAO_on_SS_E90_scaffold_6 3546 3869" /mobile_element_type="transposon:TIR/Mutator" mobile_element 8164254..8166096 /note="source:CACAO_M_E3248_F5_scaffold_1 1816 3653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8165236..8166985) /note="source:CACAO_M_S_E17777_F2_scaffold_3 2226 3969" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(8169683..8170410,8171001..8171236, 8171666..8171885,8172936..8173075,8173167..8173322, 8173414..8173901,8174352..8174423,8174670..8174744, 8174947..8175015,8175122..8175193,8175303..8175374, 8175749..8175823,8175920..8176081,8176330..8176401, 8176497..8176571,8176972..8177043,8177140..8177260, 8177834..8178067)) /locus_tag="TCM_027875" /product="Leucine-rich repeat protein kinase family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30063.m001423" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027894t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s24030.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2571t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2571t3; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc86t34" CDS complement(join(8169936..8170409,8171001..8171236, 8171666..8171885,8172939..8173075,8173167..8173322, 8173414..8173901,8174352..8174423,8174670..8174744, 8174947..8175015,8175122..8175193,8175303..8175374, 8175749..8175823,8175920..8176081,8176330..8176401, 8176497..8176571,8176972..8177043,8177140..8177260, 8177834..8177915)) /locus_tag="TCM_027875" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30063.m001423; paralog of Thecc1EG027894t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative isoform 2" /protein_id="EOY26366.1" /db_xref="TAIR:AT5G49760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJY5" /translation="MGSVIWSLLLVVFLQIYIIAATTDAGDSAALKSLMDEWEKAPPS WVGGDPCGDSWVGIGCNDSRVTSVTLPSMKLVGRLSGDISTLSELQQVDLSYNNGLTG SLPTSIGNLKKLTNLILVGCGFNGPIPDAIGSLSQLRFLSLNSNGFTGRIPPSIGNLS NLYWLDLADNQLEGPIPVSSGSTPGLDMLIHTKHFHFGKNKLSGQIPAQLFSSSMTLI HVLFESNKLTGILPSTLGHVRTLEVVRFDNNSLNGRLPLNINNLTSVHDLFLSNNKLT GPLPNLTQMNSLNTLYLSNNSFDSADVPSWFPALPALTTLMMENTQLRGQIPAIFFEL PNLQTVLVGNPVCDETGTTRSYCNLPPSNSSPLYSTPSQNCLPVPCSSSQISSPLCRC AYPYTGTLNFRGLLFSAFGNSTPYQILEQSLMHFFQSHQLPVDSVSLSDPRMDPNEYF LLNLRAFPYGQESFNRTGISMIAFVFSNQTFKPPDQLFGPYFFRGDEYEHFSDDPANS KKSSIAIKIGAAAGASVLFLLLVLAGIYAYRQKKRAERATKESNPFAHWDPKKSSGSI PQLKGARCFSFEELKKYANNFSEANDIGSGGYGKVYRGTLPTGELIAIKRAQQGSMQG GLEFKTEIELLSRVHHKNVVSLLGFCFERGEQMLIYEYVPNGSLSDSLSGKSGIRMDW TRRLKIALGAARGLAYLHELANPPIIHRDIKSTNILLDERLNAKVADFGLSKPMGDSE RGHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLEIVTARRPIERGKYIVREV RMAMDKTKSLYNLQEILDASMGFAATPKGLEKFVDLAMSCVEESGANRPTMGEVVKEI ENIMQLAGMNPNAESASSSATYEEATKGGSLHPYGDDSFAYSGVFPASKIEPQ" CDS complement(join(8169936..8170409,8171001..8171236, 8171666..8171885,8172939..8173075,8173167..8173322, 8173414..8173901,8174081..8174218,8174352..8174423, 8174670..8174744,8174947..8175015,8175122..8175193, 8175303..8175374,8175749..8175823,8175920..8176081, 8176330..8176401,8176497..8176571,8176972..8177043, 8177140..8177260,8177834..8177915)) /locus_tag="TCM_027875" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30063.m001423; paralog of Thecc1EG027894t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative isoform 1" /protein_id="EOY26365.1" /db_xref="TAIR:AT5G49760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJY5" /translation="MGSVIWSLLLVVFLQIYIIAATTDAGDSAALKSLMDEWEKAPPS WVGGDPCGDSWVGIGCNDSRVTSVTLPSMKLVGRLSGDISTLSELQQVDLSYNNGLTG SLPTSIGNLKKLTNLILVGCGFNGPIPDAIGSLSQLRFLSLNSNGFTGRIPPSIGNLS NLYWLDLADNQLEGPIPVSSGSTPGLDMLIHTKHFHFGKNKLSGQIPAQLFSSSMTLI HVLFESNKLTGILPSTLGHVRTLEVVRFDNNSLNGRLPLNINNLTSVHDLFLSNNKLT GPLPNLTQMNSLNTLYLSNNSFDSADVPSWFPALPALTTLMMENTQLRGQIPAIFFEL PNLQTVVLKGNQLNGTLDIGQISSNQLQIIDLQNNLITDFNNSDRPYNFDIILVGNPV CDETGTTRSYCNLPPSNSSPLYSTPSQNCLPVPCSSSQISSPLCRCAYPYTGTLNFRG LLFSAFGNSTPYQILEQSLMHFFQSHQLPVDSVSLSDPRMDPNEYFLLNLRAFPYGQE SFNRTGISMIAFVFSNQTFKPPDQLFGPYFFRGDEYEHFSDDPANSKKSSIAIKIGAA AGASVLFLLLVLAGIYAYRQKKRAERATKESNPFAHWDPKKSSGSIPQLKGARCFSFE ELKKYANNFSEANDIGSGGYGKVYRGTLPTGELIAIKRAQQGSMQGGLEFKTEIELLS RVHHKNVVSLLGFCFERGEQMLIYEYVPNGSLSDSLSGKSGIRMDWTRRLKIALGAAR GLAYLHELANPPIIHRDIKSTNILLDERLNAKVADFGLSKPMGDSERGHVTTQVKGTM GYLDPEYYMTQQLTEKSDVYSFGVLMLEIVTARRPIERGKYIVREVRMAMDKTKSLYN LQEILDASMGFAATPKGLEKFVDLAMSCVEESGANRPTMGEVVKEIENIMQLAGMNPN AESASSSATYEEATKGGSLHPYGDDSFAYSGVFPASKIEPQ" CDS complement(join(8170393..8170410,8171001..8171236, 8171666..8171885,8172936..8173075,8173167..8173322, 8173414..8173901,8174352..8174423,8174670..8174744, 8174947..8175015,8175122..8175193,8175303..8175374, 8175749..8175823,8175920..8176081,8176330..8176401, 8176497..8176571,8176972..8177043,8177140..8177260, 8177834..8177915)) /locus_tag="TCM_027875" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG027894t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 3" /protein_id="EOY26367.1" /db_xref="Phytozome:POPTR_0004s24030.1" /db_xref="TAIR:AT5G49760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJY5" /translation="MGSVIWSLLLVVFLQIYIIAATTDAGDSAALKSLMDEWEKAPPS WVGGDPCGDSWVGIGCNDSRVTSVTLPSMKLVGRLSGDISTLSELQQVDLSYNNGLTG SLPTSIGNLKKLTNLILVGCGFNGPIPDAIGSLSQLRFLSLNSNGFTGRIPPSIGNLS NLYWLDLADNQLEGPIPVSSGSTPGLDMLIHTKHFHFGKNKLSGQIPAQLFSSSMTLI HVLFESNKLTGILPSTLGHVRTLEVVRFDNNSLNGRLPLNINNLTSVHDLFLSNNKLT GPLPNLTQMNSLNTLYLSNNSFDSADVPSWFPALPALTTLMMENTQLRGQIPAIFFEL PNLQTVLVGNPVCDETGTTRSYCNLPPSNSSPLYSTPSQNCLPVPCSSSQISSPLCRC AYPYTGTLNFRGLLFSAFGNSTPYQILEQSLMHFFQSHQLPVDSVSLSDPRMDPNEYF LLNLRAFPYGQESFNRTGISMIAFVFSNQTFKPPDQLFGPYFFRGDEYEHFSDDPANS KKSSIAIKIGAAAGASVLFLLLVLAGIYAYRQKKRAERATKESNPFAHWDPKKSSGSI PQLKGARCFSFEELKKYANNFSEANDIGSGGYGKVVYRGTLPTGELIAIKRAQQGSMQ GGLEFKTEIELLSRVHHKNVVSLLGFCFERGEQMLIYEYVPNGSLSDSLSGKSGIRMD WTRRLKIALGAARGLAYLHELANPPIIHRDIKSTNILLDERLNAKVADFGLSKPMGDS ERGHVTTQVKGTMGLFGS" mobile_element complement(8181525..8182050) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17338 17862" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8182045..8182239) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17546 17742" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8182240..8182591 /note="source:INTACT1784F_F24_scaffold_10-int 1 354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8182561..8182663) /note="source:CACAO_M_E69236_F12_scaffold_9 742 842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8183554..8183801) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17326 17565" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8183802..8186325) /note="source:CACAO_M_S_E101381_F51_scaffold_9 572 3096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8186305..8188420) /note="source:scaffold_4_CACTA_0503 4086 6185" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8188638..8188998) /note="source:scaffold_4_CACTA_0503 3237 3596" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8188997..8189589 /note="source:CACAO_M_S_E66915_F51_scaffold_6 2513 3108" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8193003..8193035) /note="source:CACAO_M_E49857_F85_scaffold_7 9123 9155" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8193032..8193664) /note="source:CACAO_M_S_E100312_F82_scaffold_9 3914 4545" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8193989..8195649) /note="source:CACAO_M_E2863_F51_scaffold_1 1439 3111" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8195750..8196143) /note="source:CACAO_M_S_E109866_F306_scaffold_9 1221 1614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8195801..8197179 /note="source:scaffold_9_CACTA_0934 4397 5781" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8196135..8197213 /note="source:CACAO_M_S_E19454_F51_scaffold_3 2037 3120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8197861..8198135 /note="source:INTACT172_F47_scaffold_2-int 7835 8112" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8198138..8202568 /note="source:CACAO_M_E44899_F328_scaffold_6 1 4431" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8202669..8211309 /note="source:CACAO_M_E44899_F328_scaffold_6 4432 13072" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8211310..8211998) /note="source:CACAO_M_S_E33139_F368_scaffold_4 993 1679" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8211997..8213382) /note="source:CACAO_M_E52617_F328_scaffold_7 9413 10798" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8213483..8214966 /note="source:CACAO_M_E49857_F85_scaffold_7 5492 6959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8214944..8217111 /note="source:CACAO_M_E14113_F106_scaffold_3 11621 13828" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8215238..8218404) /note="source:CACAO_M_E4900_F368_scaffold_2 5578 8811" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8218378..8218511) /note="source:CACAO_M_E36294_F51_scaffold_5 6256 6389" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8218400..8219406 /note="source:CACAO_M_E22484_F328_scaffold_3 4819 5832" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8220834..8221503) /note="source:CACAO_M_E44425_F33_scaffold_6 7774 8443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8221504..8224629) /note="source:CACAO_M_S_E33139_F368_scaffold_4 2358 5505" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8224630..8227304 /note="source:CACAO_M_E4863_F82_scaffold_2 1 2696" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8227299..8228092 /note="source:CACAO_M_E12297_F14_scaffold_3 10643 11437" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8230934..8231493) /note="source:INTACT670_F33_scaffold_3-int 2290 2850" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8231905..8232900) /note="source:INTACT216_F33_scaffold_5-int 8927 9923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8234685..8236588) /note="source:INTACT453_F4_scaffold_9-int 9334 11253" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8236592..8241212) /note="source:CACAO_M_E59738_F82_scaffold_9 1030 5635" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8241213..8244315 /note="source:CACAO_M_E44907_F15_scaffold_6 1 3103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8244316..8245348) /note="source:INTACT216_F33_scaffold_5-int 6923 7966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8245349..8245779 /note="source:CACAO_M_S_E5285_F300_scaffold_1 15758 17246" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8247189..8247687) /note="source:CACAO_M_E52760_F33_scaffold_8 10438 10933" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8247790..8248735 /note="source:INTACT214_F33_scaffold_8-int 8553 9498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8248836..8250662 /note="source:INTACT760_F85_scaffold_9-int 8524 10350" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8252042..8253572 /note="source:INTACT591_F264_scaffold_1-int 19741 21267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8256557..8256676 /note="source:INTACT659F_F82_scaffold_5-int 1 122" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8256701..8257560 /note="source:CACAO_M_S_E4911_F76_scaffold_1 2972 3830" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8257661..8258238) /note="source:INTACT584_F15_scaffold_3-int 9781 10359" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8264167..8265319) /note="source:CACAO_M_E5390_F15_scaffold_2 2385 3581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8265733..8268654 /note="source:CACAO_M_S_E67482_F83_scaffold_6 1 2922" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8272256..8272430) /note="source:CACAO_M_S_E5046_F335_scaffold_1 19947 20121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8289286..8289959) /note="source:CACAO_M_S_E31635_F14_scaffold_3 1698 2374" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8290884..8290929 /note="source:INTACT135F_F90_scaffold_2-int 12868 12915" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8291779..8292155) /note="source:CACAO_on_E279_scaffold_9 8055 8452" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(8292441..>8376197) /locus_tag="TCM_027886" /note="dbxref CacaoGD:Thecc1EG027886" mRNA complement(join(8292441..8293180,8293742..8293977, 8294365..8294584,8297114..8297250,8297342..8297497, 8297589..8298073,8298252..8298389,8298523..8298594, 8298830..8298904,8299118..8299186,8339540..8339611, 8339722..8339853)) /locus_tag="TCM_027886" /product="Leucine-rich repeat protein kinase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:frave:gene29278.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027875t1" /inference="similar to AA sequence:ricco:30063.m001423" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2984t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2984t3" CDS complement(join(8292707..8293180,8293742..8293977, 8294365..8294584,8297114..8297250,8297342..8297497, 8297589..8298073,8298252..8298389,8298523..8298594, 8298830..8298904,8299118..8299137)) /locus_tag="TCM_027886" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30063.m001423; paralog of Thecc1EG027875t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative isoform 1" /protein_id="EOY26368.1" /db_xref="TAIR:AT5G49760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJY5" /translation="MNSLNTLYLSNNSFDLADVPSWFPALQALTTLMMEHTQLQGQVP ATFFELPNLQTVVLKGNRLNGTLEIGPSFSNQLKTIDLQYNSITGFNDRGRTYKFDII LVDNPVCTARETTSTYCELPPSNSSPSYLTPPSKTCPCSSGQISSPSCGCAYPYTGTL KFRALLFSDFGNLTRYKELEQSLGQFFLSHQLPVDSVSLSYPKRASFEYRLLLDLAVF PSGQKSFNRTGISMIASVFSNQTFKPPKELFGPYVFDGDEYEHFSDEPANSKKSSIAI KIGATAGASVLFLLLVLVGIYAYRQKKRAERATKESNPFAHWDSKKSSGSIPQLKGAR CFSFEELKKYTNNFSEANDIGSGGYGKVYRGTLPSGELIAIKRAQQRSMQGGLEFKTE IELLSRVHHKNVVSLLGFCFERGEQMLIYEYVPNGSLSDSLSGKSGIRLDWTRRLKIT VGAARGLAYLHELANPPIIHRDIKSTNILLDERLNAKVADFGLSKPMGDSEKGHVTTQ VKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLEIVTARKPIERGKYIVREVRLAMDKT KSLYNLQEILDASIGLAATPKGLEMFVDLAMSCVEESGANRPTMSEVVKEIENIMQLA GMNPNAESASGSATYEEATKGGSLHPYSDDSFAYSGVFPASKIEPQ" mRNA complement(join(<8292953..8293180,8293742..8293977, 8294365..8294584,8297114..8297250,8297342..8297497, 8297589..8298073,8338502..8338639,8338770..8338841, 8339077..8339151,8339365..8339433,8339540..8339611, 8375549..8375620,8375997..8376071,8376168..>8376197)) /locus_tag="TCM_027886" /product="Leucine-rich repeat protein kinase family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:frave:gene29278.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027894t1" /inference="similar to AA sequence:ricco:30063.m001423" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc83t45; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc83t45; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2984t3" CDS complement(join(<8292953..8293180,8293742..8293977, 8294365..8294584,8297114..8297250,8297342..8297497, 8297589..8298073,8338502..8338639,8338770..8338841, 8339077..8339151,8339365..8339433,8339540..8339611, 8375549..8375620,8375997..8376071,8376168..>8376196)) /locus_tag="TCM_027886" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30063.m001423; paralog of Thecc1EG027894t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative isoform 2" /protein_id="EOY26369.1" /db_xref="TAIR:AT5G49760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJY5" /translation="LDMLIHTKHFHFGKNKLSGQIPFQLFSSDMTLIHLLFESNELTG SLPSTLGLVQTLEVVRFDNNSLNGHLPLNLNNLSRVQYLFLSNNKLTGPLPDLTGMNS LNTLYLSNNSFDLADVPSWFPXXXXXXXXRMEHTQLRGQVPASIFELPNLKTVVLKGN QLNGTLEIGPSFSNQLKTIDLQYNSISGFDDGGRTYKFDIILVDNPVCTARETTSTYC ELPPSNSSPSYLTPPSKTCPCSSGQISSPSCGCAYPYTGTLKFRALLFSDFGNLTRYK ELEQSLGQFFLSHQLPVDSVSLSYPKRASFEYRLLLDLAVFPSGQKSFNRTGISMIAS VFSNQTFKPPKELFGPYVFDGDEYEHFSDEPANSKKSSIAIKIGATAGASVLFLLLVL VGIYAYRQKKRAERATKESNPFAHWDSKKSSGSIPQLKGARCFSFEELKKYTNNFSEA NDIGSGGYGKVYRGTLPSGELIAIKRAQQRSMQGGLEFKTEIELLSRVHHKNVVSLLG FCFERGEQMLIYEYVPNGSLSDSLSGKSGIRLDWTRRLKITVGAARGLAYLHELANPP IIHRDIKSTNILLDERLNAKVADFGLSKPMGDSEKGHVTTQVKGTMGYLDPEYYMTQQ LTEKSDVYSFGVLMLEIVTARKPIERGKYIVREVRLAMDKTKSLYNLQEILDASIGLA ATPKGL" mRNA complement(join(<8293758..8293977,8294365..8294584, 8297114..8297250,8297342..8297497,8297589..8298073, 8298252..8298389,8298523..8298594,8298830..8298904, 8339365..8339433,8339540..8339611,8339722..>8339793)) /locus_tag="TCM_027886" /product="Leucine-rich repeat protein kinase family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:frave:gene29278.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027894t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s24030.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc87t29; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc87t29; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2984t3" CDS complement(join(<8293760..8293977,8294365..8294584, 8297114..8297250,8297342..8297497,8297589..8298073, 8298252..8298389,8298523..8298594,8298830..8298904, 8339365..8339433,8339540..8339611,8339722..>8339792)) /locus_tag="TCM_027886" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG027894t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative isoform 3" /protein_id="EOY26370.1" /db_xref="Phytozome:POPTR_0004s24030.1" /db_xref="TAIR:AT5G49760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJY5" /translation="LFESNELTGSLPSTLGLVQTLEVVRFDNNSLNGHLPLNLNNLSR VQYLFLSNNKLTGPLPDLTGMNSLNTLYLSNNSFDLADVPSWFPALQALTTLMMEHTQ LQGQVPATFFELPNLQTVVLKGNRLNGTLEIGPSFSNQLKTIDLQYNSITGFNDRGRT YKFDIILVDNPVCTARETTSTYCELPPSNSSPSYLTPPSKTCPCSSGQISSPSCGCAY PYTGTLKFRALLFSDFGNLTRYKELEQSLGQFFLSHQLPVDSVSLSYPKRASFEYRLL LDLAVFPSGQKSFNRTGISMIASVFSNQTFKPPKELFGPYVFDGDEYEHFSDEPANSK KSSIAIKIGATAGASVLFLLLVLVGIYAYRQKKRAERATKESNPFAHWDSKKSSGSIP QLKGARCFSFEELKKYTNNFSEANDIGSGGYGKVYRGTLPSGELIAIKRAQQRSMQGG LEFKTEIELLSRVHHKNVVSLLGFCFERGEQMLIYEYVPNGSLSDSLSGKSGIRLDWT RRLKITVGAARGLAYLHELANPPIIHRDIKSTNILLDERLNAKVADFGLSKPMGDSEK GHVTT" mobile_element complement(8295554..8297001) /note="source:CACAO_M_E33933_F9_scaffold_4 23581 25029" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8300685..>8340949) /locus_tag="TCM_027887" /note="dbxref CacaoGD:Thecc1EG027887" mRNA complement(join(8300685..8300758,8300832..8300836, 8300934..8301140,8301238..8301358,8301930..8302291, 8340378..8340511,8340758..8340829,8340924..>8340949)) /locus_tag="TCM_027887" /product="Leucine-rich repeat protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g29910.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027894t1" /inference="similar to AA sequence:ricco:30063.m001423" /note="quality class is strongpartial, express is strong, homology is paralog strong, intron is weak, protein is utrpoor_partial5; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc74t50" CDS complement(join(8302188..8302291,8340378..8340511, 8340758..8340829,8340924..>8340949)) /locus_tag="TCM_027887" /note="dbxref ricco:30063.m001423; paralog of Thecc1EG027894t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative" /protein_id="EOY26371.1" /db_xref="TAIR:AT1G79620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJY5" /translation="GNLKNLTNLILVGCGFNGPIPDSIGSISQLRFLSLNSNGFTGRI PPSIGNLSNLVWLDLADNHLEGPIPVSNGSTPGLGWSFLFYVIWANCKFVDPSKSRIS YFPGISGID" mobile_element complement(8311503..8312163) /note="source:CACAO_M_E33282_F13_scaffold_4 11860 12520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8312380..8312797 /note="source:INTACT215F_F14_scaffold_3-int 10298 10707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8312433..8314050) /note="source:CACAO_M_E33282_F13_scaffold_4 9482 11846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8316265..8319714 /note="source:CACAO_M_S_E124346_F13_scaffold_10 4 3516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8320242..8322101 /note="source:CACAO_M_E9944_F272_scaffold_2 3442 5300" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8322102..8329735 /note="source:CACAO_M_E42589_F12_scaffold_5 1 12775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8325055..8330057) /note="source:INTACT447_F13_scaffold_6-int 1 5024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8330992..8331035 /note="source:INTACT135F_F90_scaffold_2-int 12868 12912" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8331985..8332361) /note="source:CACAO_on_E279_scaffold_9 8055 8452" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(8332735..8373751) /locus_tag="TCM_027890" /note="dbxref CacaoGD:Thecc1EG027890" mRNA complement(join(8332735..8333057,8333250..8333384, 8333964..8334199,8334629..8334848,8337358..8337494, 8337577..8337631)) /locus_tag="TCM_027890" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s27700.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027894t1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00069t00004" mRNA complement(join(8332811..8333384,8333964..8334199, 8334629..8334848,8337358..8337494,8337577..8337676, 8373498..8373751)) /locus_tag="TCM_027890" /product="Leucine-rich repeat family protein / protein kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031896.2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s27700.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027894t1" /inference="similar to AA sequence:ricco:30063.m001423" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00069t00014; inference alignment:Newbler:10:TSA:cgbaL_g00069t00004" CDS complement(join(8332923..8333057,8333250..8333384, 8333964..8334199,8334629..8334848,8337358..8337494, 8337577..8337583)) /locus_tag="TCM_027890" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG027894t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY26372.1" /db_xref="TAIR:AT5G49760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJY5" /translation="MITHWDSKKSGGSIPQLKGARCFSFEELKKYTNNFSEANDIGSG GYGKVYRGTLPTGELIAIKRAQQGSVQGGLEFKTEIELLSRVHHKNVVSLLGFCFERG EQMLIYEYVPNGSLSDSLSGKSGIRMDWIRRLKIALGAARGLAYLQKLANPPIIHRDI KSTNILLDERLNAKVADFGLSKPMGDGEKGHVTTQVKGTMGYLDPEYYMTQQLTEKSD VYSFGVLMLEIVTARKPIERGKYIVRELAGMNPNVESASSSATYKEATKGGSLHPYSD DFSAYSGAFPAPR" CDS complement(join(8332923..8333384,8333964..8334199, 8334629..8334848,8337358..8337494,8337577..8337583)) /locus_tag="TCM_027890" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30063.m001423; paralog of Thecc1EG027894t1" /codon_start=1 /product="Leucine-rich repeat family protein / protein kinase family protein isoform 2" /protein_id="EOY26373.1" /db_xref="TAIR:AT5G49760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6ZRY3" /translation="MITHWDSKKSGGSIPQLKGARCFSFEELKKYTNNFSEANDIGSG GYGKVYRGTLPTGELIAIKRAQQGSVQGGLEFKTEIELLSRVHHKNVVSLLGFCFERG EQMLIYEYVPNGSLSDSLSGKSGIRMDWIRRLKIALGAARGLAYLQKLANPPIIHRDI KSTNILLDERLNAKVADFGLSKPMGDGEKGHVTTQVKGTMGYLDPEYYMTQQLTEKSD VYSFGVLMLEIVTARKPIERGKYIVREVRLAMDKTKSLYNLQEILDASIGFAATPKGL EMFVDLAMSCVEESGADRPTMGEVVKEIENIMQLAGMNPNVESASSSATYKEATKGGS LHPYSDDFSAYSGAFPAPR" gene complement(8337787..8338629) /locus_tag="TCM_027891" /note="dbxref CacaoGD:Thecc1EG027891" mRNA complement(join(8337787..8338323,8338502..8338629)) /locus_tag="TCM_027891" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027894t1" /note="quality class is strong-utrpoor, express is strong, homology is paralog strong, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc74t53" CDS complement(8337804..8338010) /locus_tag="TCM_027891" /note="paralog of Thecc1EG027894t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26374.1" /translation="MDLFEYHLLDLAAFRYGQSSFNRTGIFMSAFVLSNPTFRAPREL FGPYIFIGDKYEHFSGNSYRIEVK" mobile_element 8341694..8341908 /note="source:CACAO_M_E5627_F4_scaffold_2 2187 2402" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8341909..8344801) /note="source:CACAO_M_E14378_F288_scaffold_3 67 2969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8344802..8352276 /note="source:CACAO_M_E44928_F73_scaffold_6 1 7475" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8349192..8386052) /locus_tag="TCM_027894" /note="dbxref CacaoGD:Thecc1EG027894" mRNA complement(join(8349192..8349568,8366519..8367114, 8367694..8367929,8368359..8368578,8373179..8373315, 8373407..8373562,8373654..8374144,8374323..8374460, 8374595..8374666,8374903..8374977,8375192..8375260, 8375367..8375438,8375549..8375620,8375997..8376071, 8376168..8376329,8376576..8376647,8376742..8376816, 8376989..8377002,8377202..8377271,8377369..8377489, 8378007..8378272,8380584..8381060,8386009..8386052)) /locus_tag="TCM_027894" /product="Leucine-rich repeat protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031819.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027875t1" /inference="similar to AA sequence:ricco:30063.m001423" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3078t7" mobile_element 8352277..8352347 /note="source:CACAO_M_S_E15347_F33_scaffold_2 13543 13612" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8355411..8355458) /note="source:CACAO_M_S_E6055_F310_scaffold_2 1559 1606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8356891..8357025) /note="source:INTACT261_F189_scaffold_2-int 205 285" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8357540..8359630) /note="source:CACAO_M_E14113_F106_scaffold_3 10690 12774" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8362640..8363580 /note="source:scaffold_4_CACTA_0498 1124 2085" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8362781..8363922 /note="source:INTACT567_F258_scaffold_9-int 68 1126" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8365754..8366149 /note="source:CACAO_on_E595_scaffold_6 2 393" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(8366250..8366457) /note="source:CACAO_on_E18_scaffold_1 5 217" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS complement(join(8366653..8367114,8367694..8367929, 8368359..8368578,8373179..8373315,8373407..8373562, 8373654..8374144,8374323..8374460,8374595..8374666, 8374903..8374977,8375192..8375260,8375367..8375438, 8375549..8375620,8375997..8376071,8376168..8376329, 8376576..8376647,8376742..8376816,8376989..8377002, 8377202..8377271,8377369..8377489,8378007..8378088)) /locus_tag="TCM_027894" /note="dbxref ricco:30063.m001423; paralog of Thecc1EG027875t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative" /protein_id="EOY26375.1" /db_xref="TAIR:AT5G49760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJY5" /translation="MGSAIWSLLLVVFIQIYIVAPTTDFGDSTALKSLVAEWENVPPS WVGGDPCGDGWVGISCTDSRVTSIILPSMNLVGRLSGDISTLSELQQTSMFRDLSYNQ GLTGSLPASIGNLKNLTNLILVGCGFNGPIPDSIGSLSQLRFLSLNSNGFTGRIPPSI GNLSNLVWLDLADNHLEGPIPVSNGSTPGLDMLIHTKHFHFGKNKLSGQIPFQLFSSD MTLIHLLFESNELTGSLPSTLGLVQTLEVVRFDNNSLNGHLPLNLNNLSRVQYLFLSN NKLTGPLPDLTGMNSLNTLYLGNNSFDLADVPSWFRALRALTTLRMEHTQLRGQVPAS IFELPNLQTVVLKGNQLNGTLEIGPSFSNQLKTIDLQYNSITGFDDGRRSYKFDIILV DNPVCTATETRSTYCKLPQSNSGPLYSTPPSKNCLPVSCSSDQISSPTCKCAHPYTGT LLFGGISFSDFRTSTPYEILKRQLMQFFQSHQLPVDSVSLSDPRMDLFEYHLLDLAVF PYGQSSFNRTGIFMIAFVLSNPTFRAPRELFGPYTFIGDNYEHFSDEPANSKKSSIAI KIGAAAGASLLLLLLVLAGTYAYRQKKRAERATKESNPFAHWDSKKSSGSIPQLKGAR CFSFEELKKYTNNFSEANDIGSGSYGKVYKGTLPTGELIAIKRAQQGSVQGGLEFKTE IELLSRVHHKNVVSLLGFCFERGEQMLIYEYVPNGSLSDSLSGKSGIRMDWTRRLKIA LGAARGLAYLHKLANPPIIHRDIKSSNILLDERLNAKVADFGLSKPMGDSERGHVTTQ VKGTMGYLDPEYFMTQQLTEKSDVYSFGVLMLEIVTARKPIERGKYIVREVRLAMDKT KSLYNLQEILDASIGFAATPKGLEMFVDLAMSCVEESGADRPTMSEVVKEIENIMQLA GMNPNVESASSSATYEEATKGGSLHPYSDDSSAYSGAFPAPR" mobile_element 8370748..8373010 /note="source:CACAO_on_E595_scaffold_6 1 2263" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(8380674..8380779) /note="source:INTACT711_F307_scaffold_9-int 1879 1986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8381137..8381204) /note="source:INTACT711_F307_scaffold_9-int 1918 1986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8383699..8384459 /note="source:CACAO_M_E58324_F9_scaffold_9 1 769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8384767..8386000) /note="source:CACAO_M_E48654_F60_scaffold_6 482 1723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8386001..8389110 /note="source:INTACT506_F233_scaffold_3-int 1 3104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8389111..8391858 /note="source:CACAO_M_E22758_F79_scaffold_3 1 2729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8391691..8391877) /note="source:CACAO_M_S_E1495_F60_scaffold_1 9820 10006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8391859..8392115 /note="source:INTACT506_F233_scaffold_3-int 3100 3355" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8392101..8392137) /note="source:CACAO_M_E58324_F9_scaffold_9 10191 10227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8392106..8394161 /note="source:CACAO_M_E23512_F28_scaffold_4 2526 4529" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8394155..8397159) /note="source:INTACT118_F5_scaffold_9-int 9411 12399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8398909..8399111) /note="source:CACAO_M_E24729_F87_scaffold_4 3056 3253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8399190..8402177) /note="source:INTACT118_F5_scaffold_9-int 9415 12396" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8402178..8402689 /note="source:CACAO_M_E23512_F28_scaffold_4 4524 5036" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8402690..8409535 /note="source:INTACT506_F233_scaffold_3-int 1 8042" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8409537..8410022 /note="source:CACAO_M_S_E109853_F60_scaffold_9 21018 21504" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8410024..8410667) /note="source:CACAO_M_E34045_F265_scaffold_4 1 646" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8411998..8412631 /note="source:INTACT506_F233_scaffold_3-int 3879 4472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8412628..8413528 /note="source:INTACT506_F233_scaffold_3-int 4691 5581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8413550..8418983 /note="source:INTACT506_F233_scaffold_3-int 5651 11065" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8421563..8421645 /note="source:CACAO_M_E12953_F322_scaffold_3 2009 2077" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8421578..8421630) /note="source:CACAO_M_E10997_F98_scaffold_2 710 763" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8426236..8426255 /note="source:scaffold_3_CACTA_0384 4063 4147" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8426256..8426317 /note="source:CACAO_M_E85923_F17_scaffold_12 19 82" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8427778..8427943) /note="source:scaffold_3_CACTA_0384 13925 14110" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8428180..8428516 /note="source:CACAO_M_E12028_F265_scaffold_2 1 338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8428499..8430576) /note="source:scaffold_2_CACTA_0253 5714 7758" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8431040..8432726) /note="source:INTACT710_F62_scaffold_3-int 748 2457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8432319..8434011 /note="source:CACAO_M_E69760_F9_scaffold_9 1056 2800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8434099..8440364 /note="source:CACAO_M_S_E101224_F9_scaffold_9 5125 11397" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8439445..8441224) /note="source:INTACT710_F62_scaffold_3-int 519 2457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8443334..8444540 /note="source:CACAO_M_S_E67521_F14_scaffold_6 1 1207" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8444541..8444641) /note="source:INTACT714_F310_scaffold_9-int 1589 1733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8444642..8446332 /note="source:CACAO_M_E44950_F265_scaffold_6 1 1691" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8446733..8471681) /locus_tag="TCM_027897" /note="dbxref CacaoGD:Thecc1EG027897" mRNA complement(join(8446733..8446863,8458663..8459105, 8460325..8460475,8471617..8471681)) /locus_tag="TCM_027897" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" mobile_element 8446894..8447662 /note="source:CACAO_M_E9657_F96_scaffold_2 1 769" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8446955..8453733) /locus_tag="TCM_027898" /note="dbxref CacaoGD:Thecc1EG027898" mRNA complement(join(8446955..8447235,8452624..8453733)) /locus_tag="TCM_027898" /product="DNA/RNA polymerases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400057300.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035772t1" /note="quality class is strong-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc7Loc818t9_G2" CDS complement(join(8447224..8447235,8452624..8453727)) /locus_tag="TCM_027898" /note="paralog of Thecc1EG035772t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein" /protein_id="EOY26377.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLE9" /translation="MEKICKALGCSSVRSVELAAFQLEDVAQEWYSSLCRGRPTNATP LAWSEFSVAFLDRFLPLSVRNARAREFETLVQTSSMTVSEYDIKFTQLARYAPYLVST EEMKIQRFVDGLVEPLFRAVASRDFTTYSAAVDRAQRIEMRTNESRAARDRAKRGKTE GYQGRRDFSSGGSSSSRQGPQRDSRLPQQGSDAPGANIRVGQRTFNSRRQQDSRQSSQ VIRSCDTCGRRHSGRCFLTTKTCYGCGQPGHIRRDCPMAHQSPDSARGSTQPASSAPS VAVSSGLEVSGSRGRGAGTSSQGRPSGSGHQSSIGRGQARVFALTQQEAQTSNAVVSG ILSVCNMNARVLFDPGATHSFISPCFASRLGRGRITR" mobile_element complement(8452605..8453734) /note="source:INTACT1308F_F98_scaffold_7-int 3304 4433" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8457212..8457902 /note="source:INTACT649F_F368_scaffold_5-int 6174 6864" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8458035..8458086) /note="source:scaffold_4_CACTA_0507 7673 7723" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(8458816..8459105,8460325..8460475, 8471617..8471661)) /locus_tag="TCM_027897" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26376.1" /translation="MEALTNLMAKLPFYPVAQHVNQIDSHLVEMLQDSCHMAMCYKGY YVNGYKFHTLDYGENRSTMNNALFEAIGGPQTTWTHVYGFSTMMQLPTLLALATTSES TYCLMPSINVTHVPPSEPQGYQEMKSNVKEFKTDMHDIKSIGKVVLDRLPNLACRSSS S" mobile_element complement(8461844..8461984) /note="source:CACAO_M_E70891_F369_scaffold_10 2114 2249" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8462013..8462101 /note="source:CACAO_M_E5899_F5_scaffold_2 20255 20339" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8462136..8462556 /note="source:CACAO_M_E5899_F5_scaffold_2 20299 20761" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8464607..8467345) /note="source:CACAO_M_S_E17011_F73_scaffold_3 2 2723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8467528..8470507 /note="source:CACAO_M_S_E64684_F306_scaffold_5 3 3037" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8471023..8471104 /note="source:INTACT1223F_F374_scaffold_6-int 9789 9868" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8471035..8471918) /note="source:CACAO_M_E5899_F5_scaffold_2 21827 22693" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8472673..8478197) /locus_tag="TCM_027900" /note="dbxref CacaoGD:Thecc1EG027900" mRNA complement(join(8472673..8472767,8473384..8473460, 8474567..8475121,8478002..8478197)) /locus_tag="TCM_027900" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(join(8472709..8472767,8473384..8473460, 8474567..8474670)) /locus_tag="TCM_027900" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26378.1" /translation="MAFHLNGRPPLTFTHDLKIIILIALTLSFVSMIDCIAATRMPFR YNKIRSAMLALLELPKSRIIIHRSSAHAHSHTTYN" mobile_element complement(8473532..8474220) /note="source:CACAO_M_E5899_F5_scaffold_2 22043 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8475184..8475319 /note="source:INTACT409F_F47_scaffold_4-int 16946 17080" /mobile_element_type="retrotransposon:LTR/Copia" gene 8478292..8483561 /locus_tag="TCM_027901" /note="dbxref CacaoGD:Thecc1EG027901" mRNA join(8478292..8478769,8482985..8483561) /locus_tag="TCM_027901" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(8478616..8478769,8482985..8483079) /locus_tag="TCM_027901" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26379.1" /translation="MVEEQKCHWKEMKEEDDALDTMVGHGIRMDSQSFLWKLRPSFMG NYRFTLQGVAHATYRRDGSLDTPHGTSEGSLDSTTKSQ" mobile_element 8479194..8481574 /note="source:INTACT693_F28_scaffold_7-int 3850 6193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8481765..8481833 /note="source:INTACT415F_F22_scaffold_4-int 4361 4428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8481929..8481964) /note="source:scaffold_3_CACTA_0382 10591 10626" /mobile_element_type="transposon:TIR/CACTA" gene complement(8483563..8527207) /locus_tag="TCM_027902" /note="dbxref CacaoGD:Thecc1EG027902" mRNA complement(join(8483563..8483820,8496693..8497210, 8499515..8499599,8500929..8500981,8505337..8505621, 8526684..8527207)) /locus_tag="TCM_027902" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009177t1" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.19 coverage" mobile_element 8484473..8484678 /note="source:CACAO_M_E5899_F5_scaffold_2 1 205" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8484677..8485880) /note="source:CACAO_M_E70891_F369_scaffold_10 10959 12163" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8487018..8487781) /note="source:CACAO_M_E44425_F33_scaffold_6 7774 8538" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8487802..8490761) /note="source:CACAO_M_E84109_F33_scaffold_10 1 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8490765..8491378 /note="source:CACAO_M_E5899_F5_scaffold_2 216 834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8494060..8494558) /note="source:INTACT409F_F47_scaffold_4-int 15781 16281" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8494201..8494736 /note="source:CACAO_M_E5899_F5_scaffold_2 22176 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8494376..8495115) /note="source:CACAO_M_E49857_F85_scaffold_7 20308 21045" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(8496869..8497210,8499515..8499599, 8500929..8500981,8505337..8505426)) /locus_tag="TCM_027902" /note="paralog of Thecc1EG009177t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26380.1" /translation="MTRNFHQARDNRRDVSIDTHYSECRSKPRKIGIGLACNRRRVRS IVDSGVHRHEIVRRDVNSNHTSEDTLRASPTEESFENSESLESEDSSDTSETVRNFLL KQSEEWERECTRKAIARGDIHPRKVSGVRHFPLGCGIGAALVSVEEYKRIQQAWIKEQ RRKSQEEEEDPKEDPSMCPDQDDENPKDT" mobile_element 8497456..8497567 /note="source:scaffold_3_CACTA_0382 6182 6295" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8497581..8500539 /note="source:CACAO_M_E44969_F172_scaffold_6 1 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8500540..8500594) /note="source:INTACT1223F_F374_scaffold_6-int 5411 5465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8502515..8505431 /note="source:CACAO_Mutator_E1149_scaffold_5 355 3292" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8503899..8508369) /note="source:INTACT545_F87_scaffold_5-int 1859 6291" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8508370..8508853) /note="source:CACAO_M_E49857_F85_scaffold_7 23398 23879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8508968..8509149 /note="source:INTACT599_F268_scaffold_9-int 8608 8789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8509000..8509349 /note="source:CACAO_M_E14081_F316_scaffold_3 7062 7411" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8509450..8509648 /note="source:CACAO_M_E14081_F316_scaffold_3 7446 7643" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8511640..8511943) /note="source:CACAO_M_E49857_F85_scaffold_7 20684 21022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8511943..8513945 /note="source:CACAO_Mutator_E1149_scaffold_5 1290 3291" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8514729..8514817) /note="source:INTACT409F_F47_scaffold_4-int 16186 16274" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8514818..8520118 /note="source:CACAO_M_S_E86211_F313_scaffold_7 1 5474" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8520119..8521700) /note="source:CACAO_M_E52472_F323_scaffold_7 1863 3443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8521801..8523642 /note="source:CACAO_M_E59025_F323_scaffold_9 1357 3200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8523644..8525491 /note="source:INTACT720_F313_scaffold_4-int 1170 3021" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8525436..8525499) /note="source:CACAO_on_S_E58_scaffold_2 1930 1995" /mobile_element_type="transposon:TIR/Mutator" mobile_element 8525485..8526065 /note="source:CACAO_M_E50311_F328_scaffold_7 5861 6457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8526063..8526443) /note="source:CACAO_M_S_E89272_F5_scaffold_8 17341 17721" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8527258..8528519) /locus_tag="TCM_027904" /note="dbxref CacaoGD:Thecc1EG027904" mRNA complement(8527258..8528519) /locus_tag="TCM_027904" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.59 coverage" CDS complement(8528210..8528458) /locus_tag="TCM_027904" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26381.1" /translation="MPTHFCSTSPMPTPLVWSLPRANPHLFHLTHVVEPLPCQAVPCG ASLLLTLSCVDPLLCRVTSASLVPIQPPLPRSFQFETT" mobile_element complement(8534971..8535018) /note="source:CACAO_M_E5899_F5_scaffold_2 20739 20786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8535056..8535198 /note="source:INTACT189_F49_scaffold_5-int 14548 14689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8538333..8538404 /note="source:CACAO_M_E5899_F5_scaffold_2 20736 20813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8538912..8549154 /note="source:INTACT767_F326_scaffold_6-int 1 10243" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8549248..8551321 /locus_tag="TCM_027906" /note="dbxref CacaoGD:Thecc1EG027906" mRNA join(8549248..8550271,8550722..8551321) /locus_tag="TCM_027906" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027121t1" /inference="similar to AA sequence:Phytozome:POPTR_0035s00260.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(8549825..8550271,8550722..8551033) /locus_tag="TCM_027906" /note="paralog of Thecc1EG027121t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26382.1" /db_xref="Phytozome:POPTR_0035s00260.1" /translation="MLFKRSSKSIALTLPHISSLSSLTKLNISGRNLGEGALTSDICY LSLLETLILCHNNFVSLPPNLCQLAKLHCLELSGCNKLESLLEPPSIIVDLDSCASLE IVPNPTKPYIHRKSRSDCLLWKRTYYYGGSCFKLAANALRMLKRHLKAIGDAKLIFVI LIPGSETFEWFTHWSKDSSISIVLPPNLRNDSLWMGIALCCVLVPASNNGASRDVDIS IYFLMHSPSAGPILKYISLFQSNSISGRICQDHL" mobile_element 8552422..8555660 /note="source:CACAO_M_E44982_F19_scaffold_6 1 3239" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8556990..8559010) /note="source:CACAO_M_E36294_F51_scaffold_5 11869 13861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8559011..8565544 /note="source:INTACT1327F_F381_scaffold_8-int 1 6491" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8566526..8568234 /note="source:CACAO_M_E44984_F15_scaffold_6 435 2311" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8568221..8571325) /note="source:CACAO_M_S_E120006_F51_scaffold_10 1 3079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8573752..8573971 /note="source:CACAO_M_S_E101381_F51_scaffold_9 1 220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8573972..8576824 /note="source:CACAO_M_E44988_F72_scaffold_6 1 2853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8574825..8576909) /note="source:CACAO_M_E12297_F14_scaffold_3 17035 19116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8576910..8578733) /note="source:CACAO_M_E36294_F51_scaffold_5 11868 13646" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8578734..8587852 /note="source:INTACT667_F51_scaffold_5-int 3 11167" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8587853..8588208 /note="source:INTACT135_F42_scaffold_4-int 10147 10501" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8588322..8589206 /note="source:INTACT135_F42_scaffold_4-int 2194 3080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8589202..8589263) /note="source:CACAO_M_S_E90091_F51_scaffold_8 17 78" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8589264..8593815 /note="source:INTACT636_F7_scaffold_5-int 1 4505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8593816..8595611) /note="source:INTACT135_F42_scaffold_4-int 11448 13238" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8595713..8596996) /note="source:INTACT135_F42_scaffold_4-int 10147 11429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8596997..8602393 /note="source:INTACT636_F7_scaffold_5-int 4528 9840" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8603230..8611909 /note="source:INTACT771_F78_scaffold_10-int 1 8778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8611910..8615092 /note="source:CACAO_M_E71405_F316_scaffold_10 4800 7988" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8615089..8616371 /note="source:INTACT559_F78_scaffold_2-int 8566 9846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8617739..8618687) /note="source:INTACT584_F15_scaffold_3-int 10340 11289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8623569..8632653 /note="source:INTACT901F_F95_scaffold_6-int 1 9085" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8632754..8635805 /note="source:INTACT901F_F95_scaffold_6-int 9086 12137" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8636869..8637283 /note="source:INTACT901F_F95_scaffold_6-int 12138 12552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8639387..8639424 /note="source:INTACT901F_F95_scaffold_6-int 11468 11505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8640112..8640505 /note="source:INTACT669_F295_scaffold_3-int 1 399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8640506..8643491 /note="source:CACAO_M_E45011_F7_scaffold_6 1 2986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8643499..8644597 /note="source:INTACT591_F264_scaffold_1-int 20143 21267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8645646..8645760) /note="source:CACAO_M_E11098_F15_scaffold_2 9107 9232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8645698..8646112 /note="source:INTACT669_F295_scaffold_3-int 5691 6102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8646615..8649046 /note="source:INTACT669_F295_scaffold_3-int 6968 9445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8649045..8649377 /note="source:INTACT591_F264_scaffold_1-int 6097 6429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8649359..8649545 /note="source:INTACT591_F264_scaffold_1-int 18851 19040" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8649547..8649958) /note="source:INTACT646F_F95_scaffold_5-int 7710 8121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8651939..8652180 /note="source:CACAO_M_E49857_F85_scaffold_7 22767 23008" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8652938..8653083) /note="source:INTACT646F_F95_scaffold_5-int 10980 11108" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8653059..8654357 /note="source:CACAO_M_E69460_F12_scaffold_9 6242 7546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8653647..8654927) /note="source:INTACT646F_F95_scaffold_5-int 10029 11320" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8662178..8662575) /note="source:INTACT405F_F91_scaffold_4-int 4291 4688" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8662573..8663095 /note="source:INTACT591_F264_scaffold_1-int 19170 19721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8663094..8664520) /note="source:INTACT591_F264_scaffold_1-int 19743 21204" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8665349..8667545 /note="source:CACAO_M_E45017_F15_scaffold_6 1 2197" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8668004..8673719 /note="source:CACAO_M_E45017_F15_scaffold_6 2198 7913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8675723..8678997 /note="source:CACAO_M_E45017_F15_scaffold_6 7914 11188" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8678965..8679001 /note="source:CACAO_M_E3109_F15_scaffold_1 2627 2663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8680690..8680920 /note="source:INTACT37_F117_scaffold_2-int 5446 5676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8680920..8682187 /note="source:INTACT37_F117_scaffold_2-int 321 1430" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8683105..8683700) /note="source:CACAO_M_E891_F7_scaffold_1 731 1320" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8683715..8687963 /note="source:INTACT37_F117_scaffold_2-int 1723 5971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8687956..8688054 /note="source:CACAO_M_E44265_F33_scaffold_5 6514 6616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8687966..8688123) /note="source:INTACT215_F33_scaffold_4-int 2805 2960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8688124..8697364) /note="source:INTACT214_F33_scaffold_8-int 1 6649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8697173..8697388 /note="source:INTACT582_F262_scaffold_3-int 2533 2746" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8699365..8699958) /note="source:INTACT95_F143_scaffold_9-int 5142 5731" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8700763..8701423) /note="source:CACAO_M_E69460_F12_scaffold_9 16073 16735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8701424..8702636) /note="source:CACAO_M_S_E84144_F44_scaffold_6 1763 2951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8711804..8712880 /note="source:CACAO_M_E58324_F9_scaffold_9 7669 8812" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8712967..8715868 /note="source:CACAO_M_E45025_F279_scaffold_6 1 2902" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8716035..8724815 /note="source:CACAO_M_E45026_F15_scaffold_6 1 8781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8726917..8728609 /note="source:CACAO_M_E45026_F15_scaffold_6 8782 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8728922..8729106 /note="source:CACAO_M_E5621_F82_scaffold_2 1 91" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8729009..8731353) /note="source:CACAO_M_E12081_F82_scaffold_2 766 3130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8731454..8732184) /note="source:CACAO_M_E57298_F82_scaffold_8 1 732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8732393..8733382 /note="source:CACAO_M_E49195_F17_scaffold_6 18 955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8733418..8736549 /note="source:CACAO_M_E50577_F82_scaffold_7 179 3309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8736550..8737501) /note="source:INTACT591_F264_scaffold_1-int 19355 20337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8737499..8738594 /note="source:CACAO_M_E49195_F17_scaffold_6 1963 3055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8739987..8740032 /note="source:CACAO_M_S_E122136_F76_scaffold_10 13658 13703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8740280..8740455) /note="source:CACAO_M_S_E5046_F335_scaffold_1 1709 1886" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8740692..8741512) /note="source:CACAO_M_E58324_F9_scaffold_9 1 710" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8744120..8746563) /note="source:INTACT591_F264_scaffold_1-int 1228 3716" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8746593..8747391) /note="source:INTACT591_F264_scaffold_1-int 20232 21003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8747392..8750728 /note="source:CACAO_M_E45033_F85_scaffold_6 1 3337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8751550..8751716) /note="source:INTACT591_F264_scaffold_1-int 1 169" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8751572..8752415 /note="source:INTACT584_F15_scaffold_3-int 1 844" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8752516..8754768 /note="source:INTACT584_F15_scaffold_3-int 9050 11289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8755968..8756209) /note="source:INTACT591_F264_scaffold_1-int 3 246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8758885..8758931) /note="source:CACAO_M_E49195_F17_scaffold_6 1125 1171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8763978..8764184 /note="source:CACAO_M_S_E5046_F335_scaffold_1 1703 1906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8764742..8765268) /note="source:CACAO_M_E34938_F33_scaffold_5 2413 2939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8765269..8767708) /note="source:CACAO_M_E86092_F85_scaffold_13 900 3341" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8767696..8767707) /note="source:CACAO_Mariner_E176_scaffold_6 110 182" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(8767708..8767768) /note="source:CACAO_M_S_E98116_F164_scaffold_8 7261 7321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8767769..8767795 /note="source:CACAO_M_E70891_F369_scaffold_10 9121 9171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8770828..8773424) /note="source:CACAO_M_E45026_F15_scaffold_6 5622 8219" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8773525..8778264 /note="source:CACAO_M_E5390_F15_scaffold_2 5277 10024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8778365..8779180 /note="source:CACAO_M_E52071_F15_scaffold_7 2280 3095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8779181..8782075) /note="source:CACAO_M_E22152_F33_scaffold_3 7 2907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8782132..8782249) /note="source:CACAO_M_E52278_F17_scaffold_7 6562 6679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8783073..8784797) /note="source:CACAO_M_E11415_F328_scaffold_2 11884 13353" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8784798..8787721 /note="source:CACAO_M_E45039_F86_scaffold_6 1 2924" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8787722..8788792) /note="source:CACAO_M_E11415_F328_scaffold_2 16116 17176" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8792022..8792776 /note="source:INTACT670_F33_scaffold_3-int 2207 2960" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8795250..8823879 /locus_tag="TCM_027924" /note="dbxref CacaoGD:Thecc1EG027924" mRNA join(8795250..8795484,8796047..8796118,8796201..8796325, 8796408..8796568,8796998..8797067,8798713..8798767, 8799451..8799534,8806412..8806450,8812180..8812226, 8817298..8817666,8817820..8818281,8823615..8823879) /locus_tag="TCM_027924" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023121001" /inference="similar to AA sequence:Phytozome:GSVIVT01023121001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b027004t1a2; alternateUTRof:Thecc1EG027924t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc835t3" mRNA join(8795250..8795484,8796047..8796118,8796201..8796325, 8796408..8796568,8796998..8797067,8798713..8798767, 8799451..8799534,8806412..8806450,8817298..8817460, 8817833..8818281,8823615..8823879) /locus_tag="TCM_027924" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023121001" /inference="similar to AA sequence:Phytozome:GSVIVT01023121001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b027004t1a3; alternateUTRof:Thecc1EG027924t4; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc835t3" mRNA join(8795250..8795484,8796047..8796118,8796201..8796325, 8796408..8796568,8796998..8797067,8798713..8798767, 8799451..8799534,8806412..8806450,8812180..8812226, 8817298..8817460,8817820..8817923,8818207..8818281, 8823615..8823825) /locus_tag="TCM_027924" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023121001" /inference="similar to AA sequence:Phytozome:GSVIVT01023121001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc835t3" mRNA join(8795250..8795484,8796047..8796118,8796201..8796325, 8796408..8796568,8796998..8797067,8798713..8798767, 8799451..8799534,8806412..8806450,8817298..8817460, 8817820..8818532) /locus_tag="TCM_027924" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023121001" /inference="similar to AA sequence:Phytozome:GSVIVT01023121001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:PASA:2:TSA:puevd3b027004t1a5; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc835t3" mRNA join(8795250..8795484,8796047..8796118,8796201..8796325, 8796408..8796568,8796998..8797067,8798713..8798767, 8799451..8799534,8806412..8806450,8812180..8812226, 8817298..8817460,8817820..8818378) /locus_tag="TCM_027924" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023121001" /inference="similar to AA sequence:Phytozome:GSVIVT01023121001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:PASA:2:TSA:puevd3b027004t1a4; alternateUTRof:Thecc1EG027924t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc835t3" CDS join(8795374..8795484,8796047..8796118,8796201..8796325, 8796408..8796568,8796998..8797067,8798713..8798767, 8799451..8799534,8806412..8806450,8812180..8812226, 8817298..8817403) /locus_tag="TCM_027924" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY26383.1" /db_xref="Phytozome:GSVIVT01023121001" /db_xref="TAIR:AT2G02410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GZ36" /translation="MRSITLPHCCYSSANCKRTTVILMGKSNKSPSPPPDKGPESAAP RITSNVKQNLQFLKLWKEYQKRKSSAPKPATSYRRKKMQKEDLSDDTELYRDPTTTLY YTNQGLDDAVPVLLVDGYNVCGYWMKLKKHFMKGRLDIARQKLIDELVNFSMLREVKV VVVFDAMMSGLPTHKENFSGVDVVYSGESCADAWIEKEVVALKEDGCPKVWVVTSDHC QQQAAYGAGAFIWSSKALVSEINASQKEFERMLQEQRSSSFQGKLLKHNLNSEVVDAL KDLRRQLSENESK" CDS join(8795374..8795484,8796047..8796118,8796201..8796325, 8796408..8796568,8796998..8797067,8798713..8798767, 8799451..8799534,8806412..8806450,8812180..8812226, 8817298..8817403) /locus_tag="TCM_027924" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY26384.1" /db_xref="Phytozome:GSVIVT01023121001" /db_xref="TAIR:AT2G02410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GZ36" /translation="MRSITLPHCCYSSANCKRTTVILMGKSNKSPSPPPDKGPESAAP RITSNVKQNLQFLKLWKEYQKRKSSAPKPATSYRRKKMQKEDLSDDTELYRDPTTTLY YTNQGLDDAVPVLLVDGYNVCGYWMKLKKHFMKGRLDIARQKLIDELVNFSMLREVKV VVVFDAMMSGLPTHKENFSGVDVVYSGESCADAWIEKEVVALKEDGCPKVWVVTSDHC QQQAAYGAGAFIWSSKALVSEINASQKEFERMLQEQRSSSFQGKLLKHNLNSEVVDAL KDLRRQLSENESK" CDS join(8795374..8795484,8796047..8796118,8796201..8796325, 8796408..8796568,8796998..8797067,8798713..8798767, 8799451..8799534,8806412..8806450,8812180..8812226, 8817298..8817403) /locus_tag="TCM_027924" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY26385.1" /db_xref="Phytozome:GSVIVT01023121001" /db_xref="TAIR:AT2G02410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GZ36" /translation="MRSITLPHCCYSSANCKRTTVILMGKSNKSPSPPPDKGPESAAP RITSNVKQNLQFLKLWKEYQKRKSSAPKPATSYRRKKMQKEDLSDDTELYRDPTTTLY YTNQGLDDAVPVLLVDGYNVCGYWMKLKKHFMKGRLDIARQKLIDELVNFSMLREVKV VVVFDAMMSGLPTHKENFSGVDVVYSGESCADAWIEKEVVALKEDGCPKVWVVTSDHC QQQAAYGAGAFIWSSKALVSEINASQKEFERMLQEQRSSSFQGKLLKHNLNSEVVDAL KDLRRQLSENESK" CDS join(8795374..8795484,8796047..8796118,8796201..8796325, 8796408..8796568,8796998..8797067,8798713..8798767, 8799451..8799534,8806412..8806450,8817298..8817303) /locus_tag="TCM_027924" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY26386.1" /db_xref="Phytozome:GSVIVT01023121001" /db_xref="TAIR:AT2G02410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GZ36" /translation="MRSITLPHCCYSSANCKRTTVILMGKSNKSPSPPPDKGPESAAP RITSNVKQNLQFLKLWKEYQKRKSSAPKPATSYRRKKMQKEDLSDDTELYRDPTTTLY YTNQGLDDAVPVLLVDGYNVCGYWMKLKKHFMKGRLDIARQKLIDELVNFSMLREVKV VVVFDAMMSGLPTHKENFSGVDVVYSGESCADAWIEKEVVALKEDGCPKVWVVTSDHC QQQAAYGAGAFIWSSKALVSEI" CDS join(8795374..8795484,8796047..8796118,8796201..8796325, 8796408..8796568,8796998..8797067,8798713..8798767, 8799451..8799534,8806412..8806450,8817298..8817303) /locus_tag="TCM_027924" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY26387.1" /db_xref="Phytozome:GSVIVT01023121001" /db_xref="TAIR:AT2G02410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GZ36" /translation="MRSITLPHCCYSSANCKRTTVILMGKSNKSPSPPPDKGPESAAP RITSNVKQNLQFLKLWKEYQKRKSSAPKPATSYRRKKMQKEDLSDDTELYRDPTTTLY YTNQGLDDAVPVLLVDGYNVCGYWMKLKKHFMKGRLDIARQKLIDELVNFSMLREVKV VVVFDAMMSGLPTHKENFSGVDVVYSGESCADAWIEKEVVALKEDGCPKVWVVTSDHC QQQAAYGAGAFIWSSKALVSEI" mobile_element 8832585..8834446 /note="source:CACAO_M_E45040_F4_scaffold_6 1 1862" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8838678..8841665) /note="source:CACAO_M_S_E85396_F7_scaffold_7 1 2980" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8842995..8844088) /note="source:CACAO_hAT_E1198_scaffold_3 4740 5829" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(8844089..8846181) /note="source:CACAO_M_E13958_F7_scaffold_3 849 2928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8846282..8846977) /note="source:INTACT18_F7_scaffold_4-int 8019 8852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8846974..8847513) /note="source:CACAO_hAT_E1198_scaffold_3 3720 4273" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(8848362..8851272) /note="source:CACAO_Again_on_E5_scaffold_1 1 2934" /mobile_element_type="transposon:TIR/hAT" mobile_element 8853791..8854124 /note="source:CACAO_M_E24592_F195_scaffold_4 19415 19748" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8854129..8859114 /note="source:INTACT1421F_F389_scaffold_9-int 67 8865" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8859126..8859479 /note="source:CACAO_M_E24592_F195_scaffold_4 446 801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8860909..8861570 /note="source:INTACT224_F176_scaffold_8-int 4172 4828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8861950..8863647) /note="source:INTACT695_F301_scaffold_5-int 1930 3621" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8863693..8874634 /note="source:INTACT202_F170_scaffold_6-int 1 10942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8876224..8878094 /note="source:CACAO_M_S_E4591_F5_scaffold_1 17886 19784" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8878168..8878666 /note="source:scaffold_2_CACTA_0260 6 505" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8882381..8882611) /note="source:CACAO_M_S_E122077_F328_scaffold_10 9967 10198" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8884213..8884626 /note="source:CACAO_M_E33160_F143_scaffold_4 5181 5607" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8885543..8885642 /note="source:CACAO_M_S_E65716_F44_scaffold_5 9732 9836" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8886697..8889887 /note="source:CACAO_M_E45058_F328_scaffold_6 1 3191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8893930..8894767) /note="source:CACAO_M_E58324_F9_scaffold_9 6 816" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8896519..8897672) /note="source:CACAO_M_E58324_F9_scaffold_9 9085 10247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8897693..8901525 /note="source:INTACT39F_F22_scaffold_1-int 3574 7435" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8903100..8905049 /note="source:CACAO_M_S_E85177_F5_scaffold_7 17614 19579" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8905073..8905337 /note="source:CACAO_M_S_E65716_F44_scaffold_5 9544 9808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8906030..8906815 /note="source:CACAO_M_S_E5046_F335_scaffold_1 3300 4072" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8910048..8913031 /note="source:CACAO_M_E84911_F7_scaffold_10 1 2986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8913036..8913364) /note="source:INTACT39F_F22_scaffold_1-int 3757 4093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8916395..8918590) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18082 20360" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8920673..8943551) /locus_tag="TCM_027932" /note="dbxref CacaoGD:Thecc1EG027932" mRNA complement(join(8920673..8921633,8923382..8923490, 8943446..8943551)) /locus_tag="TCM_027932" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003673t1" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS complement(join(8921445..8921633,8923382..8923429)) /locus_tag="TCM_027932" /note="paralog of Thecc1EG003673t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26388.1" /translation="MDVEKFDKNRNKDMFKVTRPRVDIHGCDHMISPMLANIVETAMA MGIRWKGASHIVIMWKKIHGLIIYDYPLESLESF" mobile_element complement(8921987..8922099) /note="source:INTACT39F_F22_scaffold_1-int 5731 5840" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8922071..8922108) /note="source:CACAO_M_E58819_F24_scaffold_9 15356 15393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8922870..8923527 /note="source:INTACT224_F176_scaffold_8-int 2319 2946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8923527..8924246) /note="source:CACAO_M_E3248_F5_scaffold_1 3773 4497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8924307..8926440 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18938 22673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8926455..8926877 /note="source:INTACT224_F176_scaffold_8-int 2928 3363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8927022..8929716 /note="source:CACAO_M_S_E67659_F144_scaffold_6 1 2680" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8929717..8930159 /note="source:INTACT224_F176_scaffold_8-int 3444 3893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8930154..8931495) /note="source:CACAO_M_E24592_F195_scaffold_4 1 1328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8931518..8938807 /note="source:INTACT595_F266_scaffold_7-int 1366 8656" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8937761..8940422) /note="source:CACAO_M_E24592_F195_scaffold_4 20 1457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8943767..8953831 /note="source:CACAO_M_E59389_F22_scaffold_9 1 10035" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8952987..8954625) /note="source:CACAO_M_S_E31635_F14_scaffold_3 16472 18069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8954626..8964219 /note="source:INTACT744_F319_scaffold_3-int 1 11465" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8962362..8970866) /locus_tag="TCM_027937" /note="dbxref CacaoGD:Thecc1EG027937" mRNA complement(join(8962362..8962390,8964321..8964923, 8970519..8970866)) /locus_tag="TCM_027937" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027932t1" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS complement(8964372..8964617) /locus_tag="TCM_027937" /note="paralog of Thecc1EG027932t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26389.1" /translation="MARPRVDIRGCDHMISPMLASIIEIAMAMEIRWRGVSQIAITWK KVHGLIIYDYLFESLESFLTCTLLHSGDILFFHSSPI" mobile_element complement(8965206..8965328) /note="source:INTACT242_F12_scaffold_1-int 2875 3000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8968595..8968772 /note="source:CACAO_M_E3884_F22_scaffold_1 17673 17856" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8970788..8970890) /note="source:CACAO_M_S_E1795_F14_scaffold_1 948 1067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8974089..8977211 /note="source:CACAO_M_S_E7818_F60_scaffold_2 21984 23852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8977650..8977735) /note="source:CACAO_M_E70891_F369_scaffold_10 2632 2717" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8978673..8978884 /note="source:INTACT285_F13_scaffold_9-int 1087 1297" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8979971..8981656) /note="source:INTACT108_F12_scaffold_5-int 9499 11163" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8981661..8982459) /note="source:CACAO_M_S_E5046_F335_scaffold_1 1 789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8987191..8989758) /note="source:INTACT18_F7_scaffold_4-int 392 2947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8991368..9004143 /note="source:INTACT674_F296_scaffold_6-int 1 12776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9004148..9006906 /note="source:CACAO_M_S_E67675_F15_scaffold_6 1 2759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9006907..9007863) /note="source:CACAO_M_E9395_F12_scaffold_2 2069 3070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9010232..9010352 /note="source:CACAO_M_S_E85177_F5_scaffold_7 20142 20263" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9011291..9024852) /locus_tag="TCM_027940" /note="dbxref CacaoGD:Thecc1EG027940" mRNA complement(join(9011291..9011328,9015867..9016268, 9016360..9017525,9018752..9020107,9020657..9021730, 9023275..9023564,9024819..9024852)) /locus_tag="TCM_027940" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene29349.9" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043608t1" /inference="similar to AA sequence:Phytozome:Glyma0023s00200.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage; weak similarity to DNA/RNA polymerases superfamily protein; inference alignment:Velvet:11:TSA:cacao3vel5sc4Loc2717t3" mobile_element complement(9012041..9012386) /note="source:scaffold_8_CACTA_0860 4230 4573" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9012475..9012840) /note="source:scaffold_8_CACTA_0860 3844 4210" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9014007..9014487) /note="source:CACAO_M_E85507_F96_scaffold_11 9441 9922" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(9016791..9017525,9018752..9020107, 9020657..9021724)) /locus_tag="TCM_027940" /note="paralog of Thecc1EG043608t1; weak similarity to DNA/RNA polymerases superfamily protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26390.1" /db_xref="Phytozome:Glyma0023s00200.1" /db_xref="TAIR:ATMG00860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XX57" /translation="MPPKTRAASRRAGEQDVPIEMADRPRASTQRGRGRRGRVTRPVG LDTPVSRQEEGQSSGDVDRHPARGITIEDLAAGLQGVNRVVEMMATHMEDIQRVVEGR PTVQESPSSQGQANHQHHEEERGHLDISLPDFLKLKPPTFSGSDASEKPQVFLDKMEK ICKALRCSSVRSVELAAFQLEDVAQEWYSSLCRGRPTNATPLAWSEFSVAFLDRFLPL SVRNARAREFETLVQTSSMTVSEYDIKFTQLARYAPYLVSTEEMKIQRFVDGLVEPLF RVVASRDFTTYSAAVDRAQRIEMRTSESRAARDRAKRGKTEGYQGRRDFSSGGSSSSR QGPQRDSRLPQQGSDAPGANIREIFVAEWEYESCVVRVKDKDTSVNLVVLDTLDFDVI LGMNWLSPCHASVDCYHKLVRFDFPGEPSFSIQGDRSNAPTNLISVISARRLLRQGCM GYLAVLKDSQAKIGDVTQVSVVKEFVDVFPEELPSLPPEREVEFCIDLIPDTRPISIP PYRMAPAELKELKDQLEDLLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCIDYRQLNKV TVKNKYPLPRIDDLFDQLQGAQCFSKIDLRSGYHQLRIRNEDIPKTAFRTRYGHYEFL VMSFGLTNAPAAFMDLMNRVFKPYLDKFVVVFIDDILIYSKSREEHEQHLKIVLQILR EHRLYAKFSKCEFWLESVAFLGHVVSKEGIRVDTKKIEAVEKWPRPTSVTEIRSFVGL AGYYRRFVKDFSKIVAPLTKLTRKDTKFEWSDACENSFEKLKACLTTAPVLSLPQGTG GYTVFCDASGTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRR CRSPIGWLEVGERKLLGPELVQDATEKIRMIRQKMLTAQSRQKSYADNRRRDLEFQVG DHVFLKVSPTKGVMRFGKKGKLSPRYIGPFEILDKVGAVAYRLALPPDLSNIHPVFHV SMLRKYNPDPSHVIRYETIQLQDDLTYEEQPVAILDRQVKKLRSKDVASVKVLWQNHT SEEVTWEAEDEMRTKHPHLFDM" mobile_element 9027975..9030914 /note="source:CACAO_M_E27121_F246_scaffold_4 1 2964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9037460..9037555) /note="source:CACAO_M_E24018_F98_scaffold_4 1983 2077" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9045371..9052524) /locus_tag="TCM_027944" /note="dbxref CacaoGD:Thecc1EG027944" mRNA complement(join(9045371..9045589,9046985..9047242, 9047327..9047425,9047693..9047778,9048062..9048108, 9052190..9052524)) /locus_tag="TCM_027944" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" CDS complement(join(9047078..9047242,9047327..9047425, 9047693..9047778,9048062..9048086)) /locus_tag="TCM_027944" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26391.1" /translation="MEGNGGKEGVDFEGGVKKYSVWVGNGTMEPNDKAFGRVETIEHL CGELSKLWGLWCDFWSVAWTTLGDAKTLWLLHNEIIFWGKHWDIKQAFDHVKLRVASW GKAKWPNMMTNISDFALPQMWL" gene 9052701..9055430 /locus_tag="TCM_027945" /note="dbxref CacaoGD:Thecc1EG027945" mRNA join(9052701..9053202,9053497..9053765,9054458..9055430) /locus_tag="TCM_027945" /product="NAC domain containing protein 35" /inference="alignment:exonerate- protein:2:ricco:30063.m001417" /inference="similar to AA sequence:ricco:30063.m001417" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1167t2" CDS join(9052950..9053202,9053497..9053765,9054458..9055132) /locus_tag="TCM_027945" /note="dbxref ricco:30063.m001417" /codon_start=1 /product="NAC domain containing protein 35" /protein_id="EOY26392.1" /db_xref="TAIR:AT2G02450.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJY7" /translation="MAIAAAATMSNDPNDNNNNDDHNNSSSSSKDDHEHDMVMPGFRF HPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDR KYRNGDRPNRVTTSGYWKATGADRMIRAENSRSIGLKKTLVFYSGKAPKGIRTSWIMN EYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRPSASLRGQQSGKKYPHD AAQQAMERFQGFGGQSQQMEIEKISETDGSSSSTSDVTTALGLSKQNVYRPMAPISTT LGLPSGIEEEGMFLNQSKQGCSSLVPNCTTVFTVGSSVSPNVVDDLHRLVSYQHATMN QQQHYYSDHHHQQQQQSEFSTLPPQSQQLSLNMLPSSLPMAFSDRLWEWNPIPEANRE YNNPFK" mobile_element complement(9057336..9058263) /note="source:CACAO_M_E33977_F20_scaffold_4 15618 16549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9058776..9058950 /note="source:CACAO_on_S_E176_scaffold_5 1 175" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(9058951..9059182) /note="source:CACAO_Mutator_E161_scaffold_1 9577 9808" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(9059183..9059224) /note="source:scaffold_1_CACTA_0009 12869 13141" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9059225..9067382 /note="source:CACAO_on_S_E176_scaffold_5 176 8337" /mobile_element_type="transposon:TIR/Mutator" mobile_element 9067263..9068080 /note="source:scaffold_1_CACTA_0009 13002 13829" /mobile_element_type="transposon:TIR/CACTA" gene 9070275..9075699 /locus_tag="TCM_027949" /note="dbxref CacaoGD:Thecc1EG027949" mRNA join(9070275..9070849,9075362..9075699) /locus_tag="TCM_027949" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS 9075365..9075586 /locus_tag="TCM_027949" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26393.1" /translation="MPYFIFHNFLESSHPFELMITFCSRSLFVLSRDLFMVFRKLIDY RVDHLVSSPIHHPSRFQHVSQVLREPVDH" mobile_element complement(9076100..9077219) /note="source:CACAO_M_E58819_F24_scaffold_9 1 1082" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9082066..9082087) /note="source:INTACT280_F60_scaffold_5-int 13870 13891" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9082088..9084922 /note="source:CACAO_M_E45094_F15_scaffold_6 1 2835" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9086332..9097262) /locus_tag="TCM_027952" /note="dbxref CacaoGD:Thecc1EG027952" mRNA complement(join(9086332..9087333,9087441..9087516, 9087673..9087896,9097251..9097262)) /locus_tag="TCM_027952" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(9087153..9087333,9087441..9087516, 9087673..9087817)) /locus_tag="TCM_027952" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26394.1" /translation="MVSLLGFEMPPKTQTIIGKIFKQMLLMKGQYNDIFFRLRIEEGG AGLLVIVMTRLRFINLSIEESVNQCLCARRNYRCSARRIMATTLSWRGVLYKCSKADY HSARKGAPLLYQGLSRHHDAKKSRPQQHLDF" mobile_element complement(9087387..9088864) /note="source:CACAO_M_S_E5046_F335_scaffold_1 1728 3245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9089256..9090372 /note="source:scaffold_3_CACTA_0388 9711 10781" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9090344..9090823 /note="source:CACAO_M_E5899_F5_scaffold_2 22110 22598" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9090817..9091055 /note="source:CACAO_M_E1841_F5_scaffold_1 25567 25805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9097233..9105427) /note="source:CACAO_M_S_E15657_F60_scaffold_2 1047 9216" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9105421..9106420) /note="source:CACAO_M_E58760_F60_scaffold_9 1 1011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9115535..9118345) /note="source:INTACT146F_F14_scaffold_2-int 3175 7108" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9118346..9118779) /note="source:CACAO_M_S_E33088_F266_scaffold_4 2129 2558" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9118765..9124480 /note="source:INTACT595_F266_scaffold_7-int 311 6048" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9123200..9124338) /locus_tag="TCM_027958" /note="dbxref CacaoGD:Thecc1EG027958" mRNA complement(9123200..9124338) /locus_tag="TCM_027958" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023233t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400029923" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage" CDS complement(9123749..9124186) /locus_tag="TCM_027958" /note="paralog of Thecc1EG023233t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26395.1" /db_xref="Phytozome:PGSC0003DMP400029923" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BRX9" /translation="MDWLSPCHASVDCYHKLVRFDFPGEPSFSIQGDRSNAPTKLISV MSTKRLLRQCCSGYLVVVRDTQAKVGDINQVSVVNEFMDVFLEELLGLPPKREIEFCI DLIPDTRPIFIPLYRMAPTELKELKDQLEDLLDKGFIGPSVSP" mobile_element complement(9124473..9125836) /note="source:INTACT1373F_F385_scaffold_8-int 7345 8711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9125837..9128794 /note="source:CACAO_M_S_E67696_F143_scaffold_6 1 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9128795..9129246 /note="source:INTACT595_F266_scaffold_7-int 7525 7982" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9129247..9140101 /note="source:INTACT78_F136_scaffold_6-int 1 10855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9140102..9142418 /note="source:CACAO_M_S_E6245_F266_scaffold_2 265 2576" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9142477..9142805) /note="source:INTACT146F_F14_scaffold_2-int 6566 6895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9142787..9146715 /note="source:CACAO_M_S_E84376_F22_scaffold_6 11971 15940" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9146819..9147708) /note="source:INTACT146F_F14_scaffold_2-int 4934 5824" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9147702..9149548) /note="source:INTACT146F_F14_scaffold_2-int 3146 5002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9150880..9151604 /note="source:INTACT649F_F368_scaffold_5-int 12 743" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9154535..9154598) /note="source:CACAO_on_S_E58_scaffold_2 1929 1995" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(9154590..9157100) /note="source:CACAO_M_E14113_F106_scaffold_3 17508 20033" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9157101..9159524 /note="source:CACAO_M_S_E7818_F60_scaffold_2 18548 21001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9159525..9160481) /note="source:INTACT172_F47_scaffold_2-int 5708 6665" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9160482..9163261) /note="source:CACAO_M_E13604_F90_scaffold_3 4226 7011" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9163261..9165439) /note="source:INTACT172_F47_scaffold_2-int 3511 5713" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9165440..9168238 /note="source:CACAO_M_E2860_F87_scaffold_1 1 2796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9168239..9168621 /note="source:INTACT649F_F368_scaffold_5-int 9070 9455" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9168622..9172864) /note="source:INTACT1820F_F94_scaffold_12-int 5182 9360" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9173262..9174372) /note="source:INTACT1820F_F94_scaffold_12-int 3435 4552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9174473..9177564) /note="source:INTACT1820F_F94_scaffold_12-int 1 3077" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9177565..9178361) /note="source:INTACT172_F47_scaffold_2-int 2316 3131" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9178353..9178826 /note="source:INTACT649F_F368_scaffold_5-int 62 537" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9178827..9183040) /note="source:INTACT759_F323_scaffold_6-int 6406 10614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9181473..9188187 /note="source:CACAO_M_S_E122136_F76_scaffold_10 3619 15747" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9185439..9189280) /note="source:CACAO_M_E12773_F323_scaffold_3 1 3829" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9189281..9190805) /note="source:CACAO_M_E14113_F106_scaffold_3 18690 20258" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9190861..9191387) /note="source:CACAO_M_S_E5285_F300_scaffold_1 1108 1636" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9191361..9191555) /note="source:CACAO_M_E14113_F106_scaffold_3 10671 10864" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9191595..9192835) /note="source:CACAO_M_S_E5285_F300_scaffold_1 18365 19596" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9195411..9195813) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17966 18369" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(9196511..9214824) /locus_tag="TCM_027964" /note="dbxref CacaoGD:Thecc1EG027964" mRNA complement(join(9196511..9197219,9197326..9197463, 9198177..9198362,9198949..9199074,9199706..9199932, 9207624..9207883,9209344..9209568,9209675..9209957, 9210046..9210520,9214307..9214824)) /locus_tag="TCM_027964" /product="GTP-binding protein enga, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s23950.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s23950.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04129t00001_C1" CDS complement(join(9196917..9197219,9197326..9197463, 9198177..9198362,9198949..9199074,9199706..9199932, 9207624..9207883,9209344..9209568,9209675..9209957, 9210046..9210160)) /locus_tag="TCM_027964" /codon_start=1 /product="GTP-binding protein enga, putative" /protein_id="EOY26396.1" /db_xref="Phytozome:POPTR_0004s23950.1" /db_xref="TAIR:AT5G39960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S055" /translation="MSHYLSAQKRRHLVFTLLRRTATYRGTTSSAHPIVSTFGSFVDA ILFKSHGIAHLRNSFRSSMQATMRFCTLSVSGDDACAKLEKSQLHSKNTKEAAFVSKK NIDFTKIDINLLPTVMIVGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAK LGDLRFRVLDSAGLETEASSGSILSRTAGMTANVLARSQFAIFLIDVRTGLHPLDKEV GKWLRRHAPGVNPIVAMNKSESLHYDIDSFAEAAMEAQILGFGEPIAISAETGLGMVA LYEALRPIFEDYMVRVLDDNSSQDENFKPNSDSCKVDESKLPLQLAIVGRPNVGKSTL LNILLQEDRVLVGPEAGLTRDSVRAEFQYQGRTVYLVDTAGWLQRADRQKGPASLSVM QSRKNLMRAHVVALVLDAEEIAKARRSMTHAEVVIARRAVEEGRGLVVIVNKMDLLKG KRNSTLYKKVVEAVPQEIQMVMPQVTGIPVIFISAIEGRGRTAVMRQVIDTYDKWCLR LSTARLNRWLRKVMSRHSWKDQGAQTKIKYFTQVKARPPTFVAFLSGKTMLSDTYVKF LTKSLKEDFDLGGIPIRIMQRSVPRVSGGSGSKSGQSIGRGVGRILSDKRSVDA" gene complement(9202404..9206316) /locus_tag="TCM_027965" /note="dbxref CacaoGD:Thecc1EG027965" mRNA complement(join(9202404..9203232,9203308..9203402, 9203511..9203577,9203729..9203782,9203874..9204000, 9204086..9204228,9204945..9205287,9206155..9206316)) /locus_tag="TCM_027965" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS complement(join(9203402,9203511..9203577,9203729..9203782, 9203874..9204000,9204086..9204228,9204945..9205245)) /locus_tag="TCM_027965" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26397.1" /translation="MRKKKIGRGKVFFAPILFVRVKCDLIIDGGSVQNIISKEAVDKL KLPTSKHPHPYKIRWIKKGHEVLVTTQCLVKFTMGGNLDDEILCDVVPMDVGHILVGC LEDEIEYGEDENPFYDVGPAILAVHGELGEQLLHALALNVCGVMIKRAERRNFNQYVM MIRMKMRNHNLFMMSMMKTMGKLMFIQFKESEIPKHPFEVWQLLKELKVAYQEFGWDR KTTHKTPDGFNG" mobile_element 9204345..9206037 /note="source:INTACT587_F1_scaffold_6-int 1 1693" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9212523..9214089 /note="source:INTACT201_F33_scaffold_5-int 6608 8158" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9219056..9221962 /note="source:CACAO_M_E45129_F33_scaffold_6 1 2907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9224112..9224233 /note="source:INTACT135F_F90_scaffold_2-int 4966 5087" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9228204..9229103) /note="source:INTACT537_F22_scaffold_2-int 12271 13189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9229148..9229254 /note="source:CACAO_M_E58480_F86_scaffold_9 6541 6643" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9229245..9229338 /note="source:CACAO_M_E58480_F86_scaffold_9 6521 6610" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9229347..9229431 /note="source:CACAO_M_E58480_F86_scaffold_9 6541 6621" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9229472..9231323) /note="source:INTACT537_F22_scaffold_2-int 10358 12212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9231400..9232648 /note="source:CACAO_M_E52617_F328_scaffold_7 19530 20781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9232649..9235278 /note="source:CACAO_M_E12901_F33_scaffold_3 1 2653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9235379..9235675) /note="source:CACAO_M_E56803_F33_scaffold_8 1 298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9235691..9237366) /note="source:CACAO_M_E69614_F33_scaffold_9 1 1676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9239248..9242215 /note="source:CACAO_M_S_E4482_F7_scaffold_1 1 2975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9242211..9244018) /note="source:CACAO_M_S_E15347_F33_scaffold_2 6712 8515" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9243812..9244740 /note="source:CACAO_M_E33213_F12_scaffold_4 9102 10011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9244732..9245214) /note="source:CACAO_M_S_E15347_F33_scaffold_2 5850 6293" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9245215..9248654 /note="source:CACAO_M_E50676_F86_scaffold_7 2 3380" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9247867..9251465) /note="source:INTACT423_F7_scaffold_6-int 3679 7231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9251466..9256040) /note="source:INTACT1378F_F386_scaffold_8-int 5278 9870" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9256041..9256239) /note="source:INTACT300_F7_scaffold_5-int 6058 6256" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9258687..9259154) /note="source:INTACT300_F7_scaffold_5-int 3162 3628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9259155..9260063 /note="source:INTACT671_F33_scaffold_8-int 4864 5771" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9260034..9260478) /note="source:CACAO_M_E52270_F33_scaffold_7 4399 4845" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9262048..9263428 /note="source:INTACT405F_F91_scaffold_4-int 5952 7318" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9263422..9267414 /note="source:CACAO_M_E9901_F33_scaffold_2 6567 10577" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9267419..9267559 /note="source:CACAO_M_E43590_F7_scaffold_5 9461 9601" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9267533..9268761) /note="source:CACAO_M_E86305_F7_scaffold_15 2455 3683" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9272170..9272532 /note="source:INTACT135_F42_scaffold_4-int 6509 6880" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9273996..9274280 /note="source:INTACT135_F42_scaffold_4-int 8330 8614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9275422..9275771) /note="source:CACAO_M_E53388_F15_scaffold_8 3277 3625" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9275772..9278233) /note="source:INTACT95_F143_scaffold_9-int 4419 6874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9278338..9278647) /note="source:CACAO_M_E13038_F22_scaffold_3 12201 12509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9279589..9279907 /note="source:CACAO_M_E45144_F15_scaffold_6 1 319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9280178..9282578 /note="source:CACAO_M_E45144_F15_scaffold_6 320 2704" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9282419..9282601) /note="source:INTACT132_F12_scaffold_9-int 8859 9047" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9283007..9283246) /note="source:CACAO_M_S_E119191_F3_scaffold_9 4507 4746" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9283674..9286234 /note="source:INTACT669_F295_scaffold_3-int 6887 9445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9286227..9287939) /note="source:CACAO_M_S_E119191_F3_scaffold_9 2401 4515" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9287921..9288052) /note="source:CACAO_M_S_E144426_F33_scaffold_10 9965 10092" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9287938..9288533 /note="source:CACAO_M_E12297_F14_scaffold_3 6346 6944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9289878..9290634) /note="source:INTACT215_F33_scaffold_4-int 8296 9051" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9290462..9302825 /locus_tag="TCM_027971" /note="dbxref CacaoGD:Thecc1EG027971" mRNA join(9290462..9290611,9291078..9291657,9302567..9302825) /locus_tag="TCM_027971" /product="Gag protease polyprotein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027593t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage" mobile_element 9291047..9291680 /note="source:CACAO_M_E12297_F14_scaffold_3 9348 9979" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 9291084..9291626 /locus_tag="TCM_027971" /note="paralog of Thecc1EG027593t1" /codon_start=1 /product="Gag protease polyprotein" /protein_id="EOY26398.1" /translation="MPPRRRRPPLTRSVGRGRGRSQRHQPDTVEEESAASTIRAAPAA EQADSPPHPPSPQPPTGIPAMPTEAAQALAAFFAAMAGQAQTGQVPPVVPPATPLVPP PIQDVSISKKLKEARQLGCVSFTGELDATVAKDWINQVSETLSDMGLDDDMKLMVATR LLEKRARTWWNSVKSRSATP" mobile_element 9292844..9293221 /note="source:CACAO_M_E12297_F14_scaffold_3 11143 11520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9298523..9298800 /note="source:CACAO_M_E12297_F14_scaffold_3 8922 9199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9298801..9299440) /note="source:CACAO_M_S_E119191_F3_scaffold_9 1764 2394" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9299439..9300146 /note="source:INTACT189_F49_scaffold_5-int 16807 17521" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9302739..9303540) /note="source:CACAO_M_E11415_F328_scaffold_2 9272 10074" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9303541..9303598 /note="source:INTACT189_F49_scaffold_5-int 17514 17571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9303687..9304658 /note="source:INTACT189_F49_scaffold_5-int 17569 18542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9305490..9316764) /note="source:INTACT667_F51_scaffold_5-int 1 11232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9317133..9317401) /note="source:CACAO_M_E22186_F143_scaffold_3 8085 8131" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9317402..9320310 /note="source:CACAO_M_E58905_F86_scaffold_9 1 2925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9320295..9320425) /note="source:INTACT296_F13_scaffold_9-int 13157 13253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9320311..9320377 /note="source:CACAO_M_E70891_F369_scaffold_10 1385 1440" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9321404..9321523) /note="source:CACAO_M_E58324_F9_scaffold_9 7657 7774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9322880..9322926 /note="source:CACAO_M_E52239_F256_scaffold_7 964 1011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9323396..9323432) /note="source:CACAO_M_S_E52921_F60_scaffold_5 16526 16565" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9323433..9326163 /note="source:CACAO_M_E22622_F15_scaffold_3 1 2731" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9326264..9327120) /note="source:INTACT905F_F31_scaffold_6-int 6419 7275" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9332494..9332813 /note="source:CACAO_M_E45026_F15_scaffold_6 635 954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9334696..9335850) /note="source:INTACT551_F248_scaffold_7-int 1 1167" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9335068..9335852) /note="source:CACAO_M_E86052_F15_scaffold_12 4117 4901" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9336329..9336587 /note="source:CACAO_M_E41756_F85_scaffold_5 16853 17112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9338292..9338977 /note="source:INTACT101_F33_scaffold_13-int 1 674" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9338959..9339025 /note="source:CACAO_M_E4027_F323_scaffold_2 7207 7270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9345347..9346240) /note="source:CACAO_M_E50361_F82_scaffold_7 1 890" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9346992..9347462 /note="source:INTACT277_F12_scaffold_9-int 3008 3487" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9350559..9351874 /note="source:CACAO_M_E32843_F82_scaffold_4 463 1776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9352118..9353413 /note="source:CACAO_M_E11588_F82_scaffold_2 2024 3319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9357669..9357895 /note="source:CACAO_M_E86052_F15_scaffold_12 4461 4687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9357996..9359016) /note="source:INTACT139F_F15_scaffold_2-int 9340 10383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9359126..9360138) /note="source:INTACT51F_F15_scaffold_1-int 9733 10721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9360957..9361714) /note="source:INTACT139F_F15_scaffold_2-int 7693 8449" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9361719..9361732) /note="source:CACAO_M_E49759_F82_scaffold_7 2647 2660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9361733..9363600 /note="source:CACAO_M_S_E4522_F33_scaffold_1 1 1866" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9363593..9365991 /note="source:CACAO_M_E53076_F33_scaffold_8 1979 4392" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9365992..9368192 /note="source:CACAO_M_E45167_F85_scaffold_6 1 2201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9368453..9376253 /note="source:CACAO_M_E45167_F85_scaffold_6 2202 10002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9376254..9382833) /note="source:INTACT201_F33_scaffold_5-int 1 6602" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9382831..9385210) /note="source:CACAO_M_E71568_F73_scaffold_10 365 2735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9385178..9385483) /note="source:CACAO_M_E48686_F73_scaffold_6 1 309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9385484..9386400 /note="source:CACAO_M_E49857_F85_scaffold_7 6954 7912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9388911..9389340) /note="source:CACAO_M_E22186_F143_scaffold_3 10472 10906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9389743..9392702 /note="source:CACAO_M_E45172_F52_scaffold_6 1 2941" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9392703..9392804) /note="source:CACAO_M_E22900_F87_scaffold_3 3306 3410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9392805..9394261 /note="source:CACAO_M_E2860_F87_scaffold_1 1 1452" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9394362..9400277) /note="source:CACAO_M_E24729_F87_scaffold_4 1 5872" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9400836..9400996 /note="source:CACAO_M_E14312_F12_scaffold_3 11044 11205" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9401405..9401451 /note="source:CACAO_M_E70891_F369_scaffold_10 14355 14400" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9401440..9402192 /note="source:INTACT39F_F22_scaffold_1-int 3567 4311" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9402316..9405626 /note="source:CACAO_M_E45176_F82_scaffold_6 1 3311" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9405634..9405793 /note="source:INTACT39F_F22_scaffold_1-int 4450 4610" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9405876..9405948 /note="source:INTACT135_F42_scaffold_4-int 6272 6336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9405939..9407969) /note="source:CACAO_M_S_E99030_F15_scaffold_9 400 2441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9408657..9409361 /note="source:INTACT39F_F22_scaffold_1-int 5995 6708" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9409331..9409495 /note="source:INTACT585_F12_scaffold_8-int 2083 2221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9415889..9416763 /note="source:CACAO_M_E14758_F15_scaffold_3 1258 2132" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9417154..9417738) /note="source:INTACT132_F12_scaffold_9-int 8904 9488" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9417733..9417941 /note="source:INTACT39F_F22_scaffold_1-int 6695 6904" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9417936..9418640 /note="source:CACAO_M_E44709_F9_scaffold_6 8895 9599" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9419298..9420892 /note="source:CACAO_M_E44709_F9_scaffold_6 13416 15012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9420890..9421173 /note="source:INTACT39F_F22_scaffold_1-int 7152 7435" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9423403..9424920 /note="source:CACAO_M_E53388_F15_scaffold_8 3276 4791" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9424917..9428074 /note="source:CACAO_M_E71405_F316_scaffold_10 4797 7988" /mobile_element_type="retrotransposon:LTR/Copia" gene 9428264..9429707 /locus_tag="TCM_027978" /note="dbxref CacaoGD:Thecc1EG027978" mRNA join(9428264..9428580,9428794..9429707) /locus_tag="TCM_027978" /product="Gag protease polyprotein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036415t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" CDS join(9428327..9428580,9428794..9428998) /locus_tag="TCM_027978" /note="paralog of Thecc1EG036415t1" /codon_start=1 /product="Gag protease polyprotein" /protein_id="EOY26399.1" /translation="MEEKSAASTIRAAPAVEQPESPPHPPPPTGIPAMPPEVAQALAV FFIAMAGQAQTGQVPPIVPPATPTVPPMPDISISKKLKEAREFDGQYYTHFHQKEKRR EFLDLKQGNLTVEEYKARFNELMLYVPDLVKSEQDQASYFEEELRNEIRE" mobile_element 9429806..9430279 /note="source:CACAO_M_E45167_F85_scaffold_6 5698 6172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9430281..9432117) /note="source:CACAO_M_S_E120333_F15_scaffold_10 991 2848" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9432117..9432510) /note="source:CACAO_M_E53388_F15_scaffold_8 6002 6378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9433175..9434143) /note="source:CACAO_M_E53388_F15_scaffold_8 4365 5334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9441157..9442110) /note="source:CACAO_M_E51398_F15_scaffold_7 1 954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9442111..9442752 /note="source:CACAO_M_E41756_F85_scaffold_5 11873 12513" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9442601..9445803 /note="source:CACAO_M_E71405_F316_scaffold_10 4795 7988" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9446400..9447085 /note="source:CACAO_M_E53561_F15_scaffold_8 1 673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9450299..9451290 /note="source:CACAO_M_E56975_F85_scaffold_8 1928 2918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9451291..9451691 /note="source:CACAO_M_E69275_F82_scaffold_9 1 401" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9452397..9453270) /note="source:CACAO_M_E72710_F85_scaffold_10 987 1861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9453786..9454254) /note="source:CACAO_M_E50361_F82_scaffold_7 1 469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9454255..9455227 /note="source:CACAO_M_E71542_F85_scaffold_10 3530 4502" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9461022..9463881 /note="source:CACAO_M_S_E50596_F15_scaffold_4 669 3527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9463858..9464140) /note="source:INTACT592_F15_scaffold_10-int 5677 5959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9467032..9469747) /note="source:CACAO_M_S_E53332_F15_scaffold_5 2837 5548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9469748..9469923 /note="source:CACAO_M_S_E84415_F15_scaffold_6 1 182" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9471974..9477801 /note="source:CACAO_M_E35955_F15_scaffold_5 4962 10793" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9477659..9478766 /locus_tag="TCM_027983" /note="dbxref CacaoGD:Thecc1EG027983" mRNA 9477659..9478766 /locus_tag="TCM_027983" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046323t1" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.20 coverage" CDS 9478276..9478587 /locus_tag="TCM_027983" /note="paralog of Thecc1EG046323t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26400.1" /translation="MASRSTTSAPITSSRPLVSQTQQRHPRFSKSEMTTSEKSFGGFD KCRHCGKYHVGLCRKLVRCFHCDQLSHYRSDCPQLGRTTVVVPSPSARTNIQRKDSTK L" mobile_element 9478925..9479800 /note="source:INTACT760_F85_scaffold_9-int 6046 6922" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9479801..9481422 /note="source:CACAO_M_E13376_F33_scaffold_3 1 1620" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9481395..9483211 /note="source:INTACT454F_F360_scaffold_4-int 3493 6867" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9484043..9484531) /note="source:CACAO_M_E42514_F40_scaffold_5 10287 10775" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9484531..9484818) /note="source:CACAO_M_E69760_F9_scaffold_9 1496 1787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9485050..9485489) /note="source:CACAO_M_E52947_F33_scaffold_8 1 440" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9485490..9485986 /note="source:CACAO_M_S_E5285_F300_scaffold_1 13488 14034" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9485953..9486183) /note="source:CACAO_M_S_E85177_F5_scaffold_7 16917 17136" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9489081..9489565 /note="source:CACAO_M_E49418_F82_scaffold_7 526 1010" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9491990..9495098 /note="source:CACAO_M_S_E86138_F33_scaffold_7 2 3204" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9495083..9495097 /note="source:CACAO_M_S_E5285_F300_scaffold_1 13571 13582" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9495098..9495722 /note="source:CACAO_M_E69226_F85_scaffold_9 1 625" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9496264..9498807) /note="source:CACAO_M_E49759_F82_scaffold_7 6193 8731" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9498908..9499356 /note="source:CACAO_M_E45017_F15_scaffold_6 7980 8426" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9501257..9502023) /note="source:INTACT659F_F82_scaffold_5-int 5430 6195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9502001..9502119) /note="source:CACAO_M_S_E100312_F82_scaffold_9 6476 6596" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9502023..9502313 /note="source:CACAO_M_E49195_F17_scaffold_6 5935 6225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9502414..9502918) /note="source:CACAO_M_E12297_F14_scaffold_3 7296 7801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9503362..9503868) /note="source:CACAO_M_E10224_F33_scaffold_2 1 507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9505144..9505606) /note="source:CACAO_M_E53587_F207_scaffold_8 19863 20325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9506447..9507034 /note="source:CACAO_M_E53587_F207_scaffold_8 9793 10380" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9507329..9508095 /note="source:CACAO_M_E53587_F207_scaffold_8 10675 11446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9511520..9512567 /note="source:INTACT646F_F95_scaffold_5-int 10124 11164" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9512932..9513661 /note="source:CACAO_M_E53587_F207_scaffold_8 16237 16964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9513762..9514331 /note="source:CACAO_M_E53587_F207_scaffold_8 9766 10335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9514665..9515420 /note="source:CACAO_M_E53587_F207_scaffold_8 10669 11410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9515391..9515426) /note="source:CACAO_M_S_E5285_F300_scaffold_1 6629 6663" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9515420..9517684 /note="source:CACAO_M_E49857_F85_scaffold_7 18535 20801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9517921..9518468 /note="source:CACAO_M_E41756_F85_scaffold_5 354 902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9518569..9520925) /note="source:CACAO_M_E51854_F82_scaffold_7 1 2367" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9528745..9529991) /note="source:INTACT135_F42_scaffold_4-int 10147 11408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9532216..9532715) /note="source:CACAO_M_E294_F134_scaffold_1 9585 10083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9538418..9541343) /note="source:CACAO_M_E71526_F33_scaffold_10 34 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9540918..9542817 /note="source:CACAO_M_E3109_F15_scaffold_1 2285 4172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9541351..9543002) /note="source:CACAO_M_E10278_F15_scaffold_2 5895 7547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9543103..9548505) /note="source:INTACT51F_F15_scaffold_1-int 1060 6458" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9548454..9548617 /note="source:CACAO_M_E50137_F15_scaffold_7 1340 1495" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9548865..9549207) /note="source:CACAO_M_E69374_F15_scaffold_9 1025 1366" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9549308..9554784) /note="source:INTACT139F_F15_scaffold_2-int 3266 8707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9549895..9558396 /note="source:INTACT218_F33_scaffold_9-int 2471 10958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9559244..9559353) /note="source:INTACT1332F_F13_scaffold_8-int 3940 4055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9559357..9559638) /note="source:scaffold_8_CACTA_0858 14457 14725" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9559606..9559961) /note="source:scaffold_8_CACTA_0858 14210 14559" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9560304..9561147 /note="source:CACAO_Mutator_E592_scaffold_3 4020 4871" /mobile_element_type="transposon:TIR/Mutator" mobile_element 9561146..9563716 /note="source:CACAO_M_E59221_F15_scaffold_9 7990 10590" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9563817..9568848 /note="source:CACAO_M_E59221_F15_scaffold_9 2427 7475" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9570658..9572486) /note="source:CACAO_M_E12376_F15_scaffold_3 1 1830" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9572487..9578685 /note="source:CACAO_Mutator_E592_scaffold_3 4865 11104" /mobile_element_type="transposon:TIR/Mutator" mobile_element 9572487..9572521 /note="source:CACAO_M_E22265_F82_scaffold_3 6809 6842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9578854..9579003 /note="source:CACAO_Mutator_E592_scaffold_3 11154 11302" /mobile_element_type="transposon:TIR/Mutator" mobile_element 9579077..9579218 /note="source:CACAO_Mutator_E1320_scaffold_6 300 423" /mobile_element_type="transposon:TIR/Mutator" mobile_element 9579273..9579448 /note="source:CACAO_Mutator_E1320_scaffold_6 2701 2877" /mobile_element_type="transposon:TIR/Mutator" mobile_element 9579652..9579721 /note="source:CACAO_Mutator_E1320_scaffold_6 2890 2959" /mobile_element_type="transposon:TIR/Mutator" mobile_element 9579716..9579799 /note="source:CACAO_Mutator_E1320_scaffold_6 2876 2959" /mobile_element_type="transposon:TIR/Mutator" mobile_element 9579794..9579877 /note="source:CACAO_Mutator_E1320_scaffold_6 2876 2959" /mobile_element_type="transposon:TIR/Mutator" mobile_element 9579869..9580117 /note="source:CACAO_Mutator_E1320_scaffold_6 2873 3121" /mobile_element_type="transposon:TIR/Mutator" mobile_element 9580110..9583050 /note="source:CACAO_M_S_E34046_F60_scaffold_4 3507 6467" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9583041..9588503 /note="source:CACAO_Mutator_E1320_scaffold_6 3110 8534" /mobile_element_type="transposon:TIR/Mutator" gene 9586328..9593649 /locus_tag="TCM_027991" /note="dbxref CacaoGD:Thecc1EG027991" mRNA join(9586328..9586589,9589334..9591644,9591736..9591818, 9592485..9593496) /locus_tag="TCM_027991" /product="Pentatricopeptide repeat superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400060670" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400060670" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1238t1" mRNA join(9586328..9586589,9589334..9591818,9592068..9592154) /locus_tag="TCM_027991" /product="Pentatricopeptide repeat superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400060670" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400060670" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:PASA:2:TSA:puevd3b027068t1a3; alternateUTRof:Thecc1EG027991t2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1238t1" mobile_element 9588491..9588532 /note="source:CACAO_Mutator_E1320_scaffold_6 8493 8534" /mobile_element_type="transposon:TIR/Mutator" mobile_element 9588525..9588582 /note="source:CACAO_Mutator_E592_scaffold_3 20313 20370" /mobile_element_type="transposon:TIR/Mutator" mobile_element 9588602..9588682 /note="source:CACAO_M_S_E85177_F5_scaffold_7 20172 20254" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9589168..9589218 /note="source:CACAO_M_E22186_F143_scaffold_3 9951 10001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9589171..9589250 /note="source:CACAO_M_E14113_F106_scaffold_3 13807 13890" /mobile_element_type="retrotransposon:LTR/Copia" mRNA join(9589358..9591818,9592393..9593649) /locus_tag="TCM_027991" /product="Pentatricopeptide repeat superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400060670" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400060670" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1424t4; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1238t1" CDS join(9589360..9591644,9591736..9591818,9592485..9592618) /locus_tag="TCM_027991" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein isoform 1" /protein_id="EOY26401.1" /db_xref="Phytozome:PGSC0003DMP400060670" /db_xref="TAIR:AT1G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q4F5" /translation="MAKGDWNDLTCHVWEHIASKISNQTQVKQLHAQLIQNSLHHHYS WVALLINACMRLRAPLSYTRTILHYSTATPSPDIYAFISALEYYYTLPVCKEQEVASL CHQLLASTNKPAALYPILIKSSVKAGILFHSHLVKLGHHHDPHTRNALMDSYAKFGPI EAARKLFDEMPGRMAEDWNSMISGYWKWGKEAEACCLFNLMPENKRNVVTWTAMVTGS ANMKDLITARRYFDRMPRRNVVSWNAMLSGYAKNGFAKEALHLFLHMIKAGDGIEPNQ ITWVAVISSCSSLADPCLADSVVKFLDKKKIQLNSYLKTALLDMHAKCGNLETAQKIF DEFGEHRSCTTWNAMISAYMRFGNLALARELFDKMPVRNVVSWNSMIAGFAQNGQPAM AIQLFKEMIATTNLKPDEVTMVSVISVCGQLGALEMGNWVVNFIVENQIKLSISGYNT LIFMYSKCGSMKDAERIFQEMKRRDTISYNALVSGFGAHGRGIEAVELMSRMRKEGIE PDHITYIGVLTACSHARLLKEGRRVFESIKFPAVDHYACMVDLLGRVGELDEAKRLID HMPMEPHAGIYGSLLNASTIHKRVELGEFAANKLFELEPSNSGNYVLLSNIYASAARW GDVDWVREAMRKLGVKKTTGWSWVEHDGKVHKFIVGDRSHERSDDIYRLLEELCRKMG RLGYIANKSCVLRDVEDEEKEEMVGTHSEKLAVCFALLVSEVGAVVRVVKNLRVCQDC HTAMKMISMLEGREIIMRDNNSKFYVIVLIDIKHRRNDFDMLLQPCLYLGEYMVKSGY SCVMDSLIIQGKGEASFGERIQFRRVYEEQVFPAE" CDS 9589360..9591693 /locus_tag="TCM_027991" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein isoform 2" /protein_id="EOY26402.1" /db_xref="Phytozome:PGSC0003DMP400060670" /db_xref="TAIR:AT1G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q4F5" /translation="MAKGDWNDLTCHVWEHIASKISNQTQVKQLHAQLIQNSLHHHYS WVALLINACMRLRAPLSYTRTILHYSTATPSPDIYAFISALEYYYTLPVCKEQEVASL CHQLLASTNKPAALYPILIKSSVKAGILFHSHLVKLGHHHDPHTRNALMDSYAKFGPI EAARKLFDEMPGRMAEDWNSMISGYWKWGKEAEACCLFNLMPENKRNVVTWTAMVTGS ANMKDLITARRYFDRMPRRNVVSWNAMLSGYAKNGFAKEALHLFLHMIKAGDGIEPNQ ITWVAVISSCSSLADPCLADSVVKFLDKKKIQLNSYLKTALLDMHAKCGNLETAQKIF DEFGEHRSCTTWNAMISAYMRFGNLALARELFDKMPVRNVVSWNSMIAGFAQNGQPAM AIQLFKEMIATTNLKPDEVTMVSVISVCGQLGALEMGNWVVNFIVENQIKLSISGYNT LIFMYSKCGSMKDAERIFQEMKRRDTISYNALVSGFGAHGRGIEAVELMSRMRKEGIE PDHITYIGVLTACSHARLLKEGRRVFESIKFPAVDHYACMVDLLGRVGELDEAKRLID HMPMEPHAGIYGSLLNASTIHKRVELGEFAANKLFELEPSNSGNYVLLSNIYASAARW GDVDWVREAMRKLGVKKTTGWSWVEHDGKVHKFIVGDRSHERSDDIYRLLEELCRKMG RLGYIANKSCVLRDVEDEEKEEMVGTHSEKLAVCFALLVSEVGAVVRVVKNLRVCQDC HTAMKMISMLEGREIIMRDNNRFHHFIDGQCSCRDYW" CDS 9589360..9591693 /locus_tag="TCM_027991" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein isoform 2" /protein_id="EOY26403.1" /db_xref="Phytozome:PGSC0003DMP400060670" /db_xref="TAIR:AT1G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q4F5" /translation="MAKGDWNDLTCHVWEHIASKISNQTQVKQLHAQLIQNSLHHHYS WVALLINACMRLRAPLSYTRTILHYSTATPSPDIYAFISALEYYYTLPVCKEQEVASL CHQLLASTNKPAALYPILIKSSVKAGILFHSHLVKLGHHHDPHTRNALMDSYAKFGPI EAARKLFDEMPGRMAEDWNSMISGYWKWGKEAEACCLFNLMPENKRNVVTWTAMVTGS ANMKDLITARRYFDRMPRRNVVSWNAMLSGYAKNGFAKEALHLFLHMIKAGDGIEPNQ ITWVAVISSCSSLADPCLADSVVKFLDKKKIQLNSYLKTALLDMHAKCGNLETAQKIF DEFGEHRSCTTWNAMISAYMRFGNLALARELFDKMPVRNVVSWNSMIAGFAQNGQPAM AIQLFKEMIATTNLKPDEVTMVSVISVCGQLGALEMGNWVVNFIVENQIKLSISGYNT LIFMYSKCGSMKDAERIFQEMKRRDTISYNALVSGFGAHGRGIEAVELMSRMRKEGIE PDHITYIGVLTACSHARLLKEGRRVFESIKFPAVDHYACMVDLLGRVGELDEAKRLID HMPMEPHAGIYGSLLNASTIHKRVELGEFAANKLFELEPSNSGNYVLLSNIYASAARW GDVDWVREAMRKLGVKKTTGWSWVEHDGKVHKFIVGDRSHERSDDIYRLLEELCRKMG RLGYIANKSCVLRDVEDEEKEEMVGTHSEKLAVCFALLVSEVGAVVRVVKNLRVCQDC HTAMKMISMLEGREIIMRDNNRFHHFIDGQCSCRDYW" gene complement(9598900..9605365) /locus_tag="TCM_027993" /note="dbxref CacaoGD:Thecc1EG027993" mRNA complement(join(9598900..9600008,9600516..9600837, 9600934..9601063,9602623..9602851,9604750..9604782, 9604897..9605360)) /locus_tag="TCM_027993" /product="ATP synthase alpha subunit mitochondrial, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029101t1" /inference="similar to AA sequence:Phytozome:GSVIVT01023128001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc204t23; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc204t23" mRNA complement(join(9599780..9600008,9600516..9600837, 9600937..9601063,9602623..9602851,9604750..9604782, 9604897..9605365)) /locus_tag="TCM_027993" /product="ATP synthase alpha subunit mitochondrial, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029101t1" /inference="similar to AA sequence:ricco:30063.m001414" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2961t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc204t23; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc586t4" CDS complement(join(9600565..9600837,9600937..9601063, 9602623..9602851,9604750..9604782,9604897..9604993)) /locus_tag="TCM_027993" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30063.m001414; paralog of Thecc1EG029101t1" /codon_start=1 /product="ATP synthase alpha subunit mitochondrial, putative isoform 2" /protein_id="EOY26405.1" /db_xref="TAIR:AT2G02470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S053" /translation="MEGTPHPIPRTVEEVFNDFKGRRAGLIKALTAEVDKFYQQCDPE KENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWL LAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNVKQPKEQSANHNSSGKSKSS AKSRQSEPPSKMVKMSPPSKDEDESGEEDEEDDEQGATCGACGDSYGADEFWICCDIC ERWFHGKCVKITPAKAEHIKQYKCPSCSSKRARV" CDS complement(join(9600565..9600837,9600934..9601063, 9602623..9602851,9604750..9604782,9604897..9604993)) /locus_tag="TCM_027993" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029101t1" /codon_start=1 /product="ATP synthase alpha subunit mitochondrial, putative isoform 1" /protein_id="EOY26404.1" /db_xref="Phytozome:GSVIVT01023128001" /db_xref="TAIR:AT2G02470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S053" /translation="MEGTPHPIPRTVEEVFNDFKGRRAGLIKALTAEVDKFYQQCDPE KENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWL LAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNVKQPKEQSANHNSSGKSKSS AKVSRQSEPPSKMVKMSPPSKDEDESGEEDEEDDEQGATCGACGDSYGADEFWICCDI CERWFHGKCVKITPAKAEHIKQYKCPSCSSKRARV" mobile_element complement(9607041..9607128) /note="source:CACAO_M_E14113_F106_scaffold_3 13799 13879" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9608028..9608214) /note="source:CACAO_M_E14113_F106_scaffold_3 12590 12782" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9608752..9612006 /note="source:CACAO_M_E10476_F82_scaffold_2 1 3333" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9612888..9615511) /note="source:CACAO_M_E14113_F106_scaffold_3 17710 20333" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9615512..9617099 /note="source:CACAO_M_E59623_F33_scaffold_9 1 1616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9617531..9619691 /note="source:CACAO_M_E363_F42_scaffold_1 184 2346" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9620492..9621591 /note="source:CACAO_M_E53009_F42_scaffold_8 5015 6114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9621583..9622432) /note="source:INTACT172_F47_scaffold_2-int 6023 6875" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9622433..9623251 /note="source:INTACT567_F258_scaffold_9-int 9974 10774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9623252..9626190 /note="source:CACAO_M_E4900_F368_scaffold_2 3852 6823" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9626291..9627052) /note="source:CACAO_M_E14113_F106_scaffold_3 19622 20349" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9627692..9627822 /note="source:CACAO_M_S_E33139_F368_scaffold_4 577 722" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9628025..9629740 /note="source:CACAO_M_E4900_F368_scaffold_2 779 2511" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9629743..9631977 /note="source:CACAO_M_E50350_F79_scaffold_7 1 3684" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9631978..9632146) /note="source:CACAO_M_S_E146091_F272_scaffold_11 3774 3937" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9632147..9632281 /note="source:CACAO_M_E50350_F79_scaffold_7 3685 3909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9632277..9634707) /note="source:CACAO_M_E14113_F106_scaffold_3 15802 18224" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9636701..9636819 /note="source:CACAO_M_E44543_F5_scaffold_6 8388 8505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9643633..9650355) /note="source:CACAO_M_E13157_F7_scaffold_3 3507 10396" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9650351..9651343 /note="source:INTACT765_F324_scaffold_1-int 6787 7760" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9651315..9653801) /note="source:CACAO_M_S_E33169_F7_scaffold_4 1 2499" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9655403..9655555 /note="source:CACAO_M_E53135_F19_scaffold_8 2701 2851" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9656621..9656734 /note="source:CACAO_M_E53135_F19_scaffold_8 3927 4043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9657121..9657353 /note="source:CACAO_M_E53135_F19_scaffold_8 4531 4751" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9658718..9658789 /note="source:CACAO_M_E53135_F19_scaffold_8 6251 6321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9659035..9659121 /note="source:CACAO_M_E11054_F12_scaffold_2 8778 8830" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9659061..9659135 /note="source:CACAO_M_E14113_F106_scaffold_3 13826 13887" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9659147..9659355) /note="source:CACAO_M_E5899_F5_scaffold_2 1119 1325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9660298..9660472 /note="source:CACAO_M_E84179_F14_scaffold_10 12450 12623" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9660320..9660629) /note="source:CACAO_M_E2975_F12_scaffold_1 85 251" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9663097..9663851) /note="source:INTACT785_F332_scaffold_2-int 2056 2845" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9663852..9664399) /note="source:INTACT785_F332_scaffold_2-int 6747 7294" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9664395..9666287) /note="source:CACAO_M_E13220_F12_scaffold_3 9805 11710" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9667453..9671373) /note="source:CACAO_M_E53135_F19_scaffold_8 2427 6323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9674051..9676291 /note="source:INTACT649F_F368_scaffold_5-int 7645 9887" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9676306..9676800) /note="source:CACAO_M_E14113_F106_scaffold_3 12623 13097" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9677842..9677988 /note="source:INTACT88_F12_scaffold_4-int 11145 11288" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9677993..9693673 /note="source:INTACT904F_F49_scaffold_6-int 1 15681" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9693633..9693678 /note="source:CACAO_Mariner_E229_scaffold_9 1793 1838" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 9693828..9693911 /note="source:INTACT88_F12_scaffold_4-int 11558 11645" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9694499..9694554) /note="source:CACAO_M_S_E5162_F13_scaffold_1 5312 5366" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9699452..9702114) /note="source:INTACT296_F13_scaffold_9-int 11778 14447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9710079..9710168) /note="source:CACAO_M_S_E4413_F3_scaffold_1 18231 18318" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9710169..9711718 /note="source:CACAO_M_S_E89272_F5_scaffold_8 14068 15551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9711715..9712379) /note="source:CACAO_M_S_E4413_F3_scaffold_1 652 1365" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9712061..9713011 /note="source:scaffold_2_CACTA_0261 419 1368" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9714006..9714607 /note="source:CACAO_M_S_E119615_F3_scaffold_9 17328 17927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9715313..9724491 /note="source:CACAO_M_S_E66670_F14_scaffold_5 771 9922" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9722946..9724667 /note="source:CACAO_M_E23144_F272_scaffold_4 11452 13163" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9724585..9724679 /note="source:scaffold_1_CACTA_0011 3671 3767" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9724669..9725324) /note="source:CACAO_M_S_E4413_F3_scaffold_1 17089 17746" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9725377..9725606) /note="source:CACAO_M_S_E4413_F3_scaffold_1 16871 17102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9728459..9729100) /note="source:scaffold_9_CACTA_0931 1 645" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9730006..9730069) /note="source:INTACT83_F5_scaffold_9-int 10256 10319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9730977..9733932 /note="source:CACAO_M_E45230_F44_scaffold_6 1 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9740567..9740637) /note="source:CACAO_M_E3248_F5_scaffold_1 25725 25786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9740689..9740969) /note="source:scaffold_9_CACTA_0931 1 281" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9741604..9741676) /note="source:INTACT189_F49_scaffold_5-int 18498 18569" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9743479..9772803 /locus_tag="TCM_028001" /note="dbxref CacaoGD:Thecc1EG028001" mRNA join(9743479..9743548,9756463..9756722,9758952..9761639, 9761872..9762091,9767531..9768094,9769160..9769946, 9770680..9770761,9770888..9770982,9771996..9772803) /locus_tag="TCM_028001" /product="AAA-type ATPase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04050.1" /inference="similar to AA sequence:ricco:30063.m001409" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2766t3" mobile_element 9743639..9753721 /note="source:CACAO_M_E45234_F22_scaffold_6 1 10083" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA join(9758963..9761639,9761872..9762091,9767531..9768094, 9769160..9769946,9770669..9770761,9770888..9771219) /locus_tag="TCM_028001" /product="AAA-type ATPase family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04050.1" /inference="similar to AA sequence:ricco:30063.m001409" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc483t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2766t3" mRNA join(9758963..9761639,9761872..9762091,9767531..9768094, 9769160..9769946,9770680..9771219) /locus_tag="TCM_028001" /product="AAA-type ATPase family protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04050.1" /inference="similar to AA sequence:ricco:30063.m001409" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc483t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2766t3" mRNA join(9759132..9761639,9761872..9762091,9767531..9768094, 9769160..9769946,9770680..9770764,9770888..9770982, 9771996..9772387) /locus_tag="TCM_028001" /product="AAA-type ATPase family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04050.1" /inference="similar to AA sequence:ricco:30063.m001409" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2766t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2766t3" CDS join(9759411..9761639,9761872..9762091,9767531..9768094, 9769160..9769946,9770680..9770764,9770888..9770982, 9771996..9772017) /locus_tag="TCM_028001" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30063.m001409" /codon_start=1 /product="AAA-type ATPase family protein, putative isoform 3" /protein_id="EOY26408.1" /db_xref="TAIR:AT2G02480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJZ1" /translation="MSDMRISDPSRLHLKKELTQIRKAARVLRDPGTTSSWKSPLSSS RSVAAAAAAAAGSASTCSALRNNFDNESLNRPNGNAYLDSSQLPFRVESNGHGYKNNA INSNGIEKEKRVFLYNWKSQKSSSINVEDDDDDEDDDYDDDVDDDDGEQSSSWIQGSF DDNSLSDARNCGDSKSDTYLGESRSASMMFRCRDANLVSLVTPSTRRMLGPNKKNKKN SAHLDVLSRYEQNKSAVARNSVNSRKFLKAHPALALNLGRDDSVDQSDDTEDFSNSED FRKISGPSPLLLKVKQKNWSHASSRLLKTGRKEDSSYSYSTPALSTSSYNRYFNQNPS TVGSWDATTISLNDGDDEVDDPLDLPGRQGCGIPCYWTKRTPKHRGVCGSCYSPSLSD TLRRKGSSILCGSQPVYHRHRHSSSLSNKQRIALRSAQGLLPLLSNSGDRRGGSSIGT RCSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALTGEGEEEGTPENIKSL SQKYKPMFFDELIGQNIVVQSLMNAVSRGRIAPVYLFQGPRGTGKTSTAKIFAAALNC LATEGAKPCGYCRECAEFVSGKSRELWEVDSTNKKGIDGVRYLLKSLSKGLPSSSSRY KVFVIDECHLLPSKIWLALLKFLEDPPPRVVFVFITTDLDNVPRTVQSRCQKYLFNKI KDGDIMARLRKISTDEKLEVESDALDLIALNADGSLRDAETMLDQLSLLGKRITTSLV NELVGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG TYNIVDSKYSHSFFGGRALSEAELERLKHALKLLSEAEKQLRVSSERSTWFTATLLQL GSLPSPDLTQSGSSRRQSSKTTEDDPSSTSWEATAYKQKSGIQYMPRKSTSPASLHKY VNGNSNHQGELLSRIDGYDSDLKPSQGRIMDGGALPAACDNNLSGNMILTCRNSEKLD EIWAKCIDKCHSKTLRQLLHAHGKLLSLAEVEGVLIAYLAFGDGDIKSRAERFLSSIT NSIEIVMRRNVEVRIILLTNGEVSLNHANPAEKPESLQQAETAVEIEKERKAISKIVG DGFSSLNLHQESRKVSKESFSDLEGKLRGVQDYSNCSAQSIVRTPELLAEGNAEIGSS KESRQEIPMQRIESIIREQRLETAWLQVAEKGTPGSLSRLKPEKNQVLPQEVFRQSNL GSMNSSAFSSQQWEDELNHELKILKTNDGQGQAIQKDQMARRGDQYPMSPSLLHNSSL SKENLGYDSGSGNGGCSGLFCWNNTKPHRRAKVVKGTPVRARRSGRFSLFGECGKSKK IENRRRRTGNQQI" CDS join(9759411..9761639,9761872..9762091,9767531..9768094, 9769160..9769946,9770680..9770761,9770888..9770982, 9771996..9772017) /locus_tag="TCM_028001" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30063.m001409" /codon_start=1 /product="AAA-type ATPase family protein, putative isoform 1" /protein_id="EOY26406.1" /db_xref="TAIR:AT2G02480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJZ1" /translation="MSDMRISDPSRLHLKKELTQIRKAARVLRDPGTTSSWKSPLSSS RSVAAAAAAAAGSASTCSALRNNFDNESLNRPNGNAYLDSSQLPFRVESNGHGYKNNA INSNGIEKEKRVFLYNWKSQKSSSINVEDDDDDEDDDYDDDVDDDDGEQSSSWIQGSF DDNSLSDARNCGDSKSDTYLGESRSASMMFRCRDANLVSLVTPSTRRMLGPNKKNKKN SAHLDVLSRYEQNKSAVARNSVNSRKFLKAHPALALNLGRDDSVDQSDDTEDFSNSED FRKISGPSPLLLKVKQKNWSHASSRLLKTGRKEDSSYSYSTPALSTSSYNRYFNQNPS TVGSWDATTISLNDGDDEVDDPLDLPGRQGCGIPCYWTKRTPKHRGVCGSCYSPSLSD TLRRKGSSILCGSQPVYHRHRHSSSLSNKQRIALRSAQGLLPLLSNSGDRRGGSSIGT RCSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALTGEGEEEGTPENIKSL SQKYKPMFFDELIGQNIVVQSLMNAVSRGRIAPVYLFQGPRGTGKTSTAKIFAAALNC LATEGAKPCGYCRECAEFVSGKSRELWEVDSTNKKGIDGVRYLLKSLSKGLPSSSSRY KVFVIDECHLLPSKIWLALLKFLEDPPPRVVFVFITTDLDNVPRTVQSRCQKYLFNKI KDGDIMARLRKISTDEKLEVESDALDLIALNADGSLRDAETMLDQLSLLGKRITTSLV NELVGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG TYNIVDSKYSHSFFGGRALSEAELERLKHALKLLSEAEKQLRVSSERSTWFTATLLQL GSLPSPDLTQSGSSRRQSSKTTEDDPSSTSWEATAYKQKSGIQYMPRKSTSPASLHKY VNGNSNHQGELLSRIDGYDSDLKPSQGRIMDGGALPAACDNNLSGNMILTCRNSEKLD EIWAKCIDKCHSKTLRQLLHAHGKLLSLAEVEGVLIAYLAFGDGDIKSRAERFLSSIT NSIEIVMRRNVEVRIILLTNGEVSLNHANPAEKPESLQQAETAVEIEKERKAISKIVG DGFSSLNLHQESRKVSKESFSDLEGKLRGVQDYSNCSAQSIVRTPELLAEGNAEIGSS KESRQEIPMQRIESIIREQRLETAWLQVAEKGTPGSLSRLKPEKNQVLPQEVFRQSNL GSMNSSAFSSQQWEDELNHELKILKTNDGQGQAIQKDQMARRGDQYPMSPSLLHNSSL SKENLGYDSGSGNGGCSGLFCWNNTKPHRRAKVKGTPVRARRSGRFSLFGECGKSKKI ENRRRRTGNQQI" CDS join(9759411..9761639,9761872..9762091,9767531..9768094, 9769160..9769946,9770680..9770986) /locus_tag="TCM_028001" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30063.m001409" /codon_start=1 /product="AAA-type ATPase family protein, putative isoform 4" /protein_id="EOY26409.1" /db_xref="TAIR:AT1G14460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJZ1" /translation="MSDMRISDPSRLHLKKELTQIRKAARVLRDPGTTSSWKSPLSSS RSVAAAAAAAAGSASTCSALRNNFDNESLNRPNGNAYLDSSQLPFRVESNGHGYKNNA INSNGIEKEKRVFLYNWKSQKSSSINVEDDDDDEDDDYDDDVDDDDGEQSSSWIQGSF DDNSLSDARNCGDSKSDTYLGESRSASMMFRCRDANLVSLVTPSTRRMLGPNKKNKKN SAHLDVLSRYEQNKSAVARNSVNSRKFLKAHPALALNLGRDDSVDQSDDTEDFSNSED FRKISGPSPLLLKVKQKNWSHASSRLLKTGRKEDSSYSYSTPALSTSSYNRYFNQNPS TVGSWDATTISLNDGDDEVDDPLDLPGRQGCGIPCYWTKRTPKHRGVCGSCYSPSLSD TLRRKGSSILCGSQPVYHRHRHSSSLSNKQRIALRSAQGLLPLLSNSGDRRGGSSIGT RCSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALTGEGEEEGTPENIKSL SQKYKPMFFDELIGQNIVVQSLMNAVSRGRIAPVYLFQGPRGTGKTSTAKIFAAALNC LATEGAKPCGYCRECAEFVSGKSRELWEVDSTNKKGIDGVRYLLKSLSKGLPSSSSRY KVFVIDECHLLPSKIWLALLKFLEDPPPRVVFVFITTDLDNVPRTVQSRCQKYLFNKI KDGDIMARLRKISTDEKLEVESDALDLIALNADGSLRDAETMLDQLSLLGKRITTSLV NELVGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG TYNIVDSKYSHSFFGGRALSEAELERLKHALKLLSEAEKQLRVSSERSTWFTATLLQL GSLPSPDLTQSGSSRRQSSKTTEDDPSSTSWEATAYKQKSGIQYMPRKSTSPASLHKY VNGNSNHQGELLSRIDGYDSDLKPSQGRIMDGGALPAACDNNLSGNMILTCRNSEKLD EIWAKCIDKCHSKTLRQLLHAHGKLLSLAEVEGVLIAYLAFGDGDIKSRAERFLSSIT NSIEIVMRRNVEVRIILLTNGEVSLNHANPAEKPESLQQAETAVEIEKERKAISKIVG DGFSSLNLHQESRKVSKESFSDLEGKLRGVQDYSNCSAQSIVRTPELLAEGNAEIGSS KESRQEIPMQRIESIIREQRLETAWLQVAEKGTPGSLSRLKPEKNQVLPQEVFRQSNL GSMNSSAFSSQQWEDELNHELKILKTNDGQGQAIQKDQMARRGDQYPMSPSLLHNSSL SKENLGYDSGSGNGGCSGLFCWNNTKPHRRAKVGSCYSPSPLAFSQQIKVTGIAFKNL QHDLCFFSSQKKKKTQVKGTPVRARRSGRFSLFGECGKSKKIENRRRR" CDS join(9759411..9761639,9761872..9762091,9767531..9768094, 9769160..9769946,9770669..9770761,9770888..9770891) /locus_tag="TCM_028001" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30063.m001409" /codon_start=1 /product="AAA-type ATPase family protein, putative isoform 2" /protein_id="EOY26407.1" /db_xref="TAIR:AT2G02480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJZ1" /translation="MSDMRISDPSRLHLKKELTQIRKAARVLRDPGTTSSWKSPLSSS RSVAAAAAAAAGSASTCSALRNNFDNESLNRPNGNAYLDSSQLPFRVESNGHGYKNNA INSNGIEKEKRVFLYNWKSQKSSSINVEDDDDDEDDDYDDDVDDDDGEQSSSWIQGSF DDNSLSDARNCGDSKSDTYLGESRSASMMFRCRDANLVSLVTPSTRRMLGPNKKNKKN SAHLDVLSRYEQNKSAVARNSVNSRKFLKAHPALALNLGRDDSVDQSDDTEDFSNSED FRKISGPSPLLLKVKQKNWSHASSRLLKTGRKEDSSYSYSTPALSTSSYNRYFNQNPS TVGSWDATTISLNDGDDEVDDPLDLPGRQGCGIPCYWTKRTPKHRGVCGSCYSPSLSD TLRRKGSSILCGSQPVYHRHRHSSSLSNKQRIALRSAQGLLPLLSNSGDRRGGSSIGT RCSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALTGEGEEEGTPENIKSL SQKYKPMFFDELIGQNIVVQSLMNAVSRGRIAPVYLFQGPRGTGKTSTAKIFAAALNC LATEGAKPCGYCRECAEFVSGKSRELWEVDSTNKKGIDGVRYLLKSLSKGLPSSSSRY KVFVIDECHLLPSKIWLALLKFLEDPPPRVVFVFITTDLDNVPRTVQSRCQKYLFNKI KDGDIMARLRKISTDEKLEVESDALDLIALNADGSLRDAETMLDQLSLLGKRITTSLV NELVGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG TYNIVDSKYSHSFFGGRALSEAELERLKHALKLLSEAEKQLRVSSERSTWFTATLLQL GSLPSPDLTQSGSSRRQSSKTTEDDPSSTSWEATAYKQKSGIQYMPRKSTSPASLHKY VNGNSNHQGELLSRIDGYDSDLKPSQGRIMDGGALPAACDNNLSGNMILTCRNSEKLD EIWAKCIDKCHSKTLRQLLHAHGKLLSLAEVEGVLIAYLAFGDGDIKSRAERFLSSIT NSIEIVMRRNVEVRIILLTNGEVSLNHANPAEKPESLQQAETAVEIEKERKAISKIVG DGFSSLNLHQESRKVSKESFSDLEGKLRGVQDYSNCSAQSIVRTPELLAEGNAEIGSS KESRQEIPMQRIESIIREQRLETAWLQVAEKGTPGSLSRLKPEKNQVLPQEVFRQSNL GSMNSSAFSSQQWEDELNHELKILKTNDGQGQAIQKDQMARRGDQYPMSPSLLHNSSL SKENLHSLVDMIRGQEMEDAVGFSVGTTPSLIEGQR" mobile_element complement(9772788..9773110) /note="source:INTACT135F_F90_scaffold_2-int 13624 13945" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9773113..9773288 /note="source:CACAO_M_S_E4911_F76_scaffold_1 1 175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9773276..9773859) /note="source:CACAO_M_E12297_F14_scaffold_3 8634 9195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9775543..9776371 /note="source:INTACT215_F33_scaffold_4-int 2258 3089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9776472..9776993) /note="source:CACAO_M_E12297_F14_scaffold_3 13344 13865" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9781944..9782160) /note="source:CACAO_M_E12297_F14_scaffold_3 6346 6538" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9782137..9782630 /note="source:CACAO_M_S_E122136_F76_scaffold_10 171 723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9783068..9783239 /note="source:CACAO_M_S_E122136_F76_scaffold_10 4274 4444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9783253..9786586 /note="source:CACAO_M_E45237_F207_scaffold_6 1 3334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9786595..9787241 /note="source:CACAO_M_S_E122136_F76_scaffold_10 4450 5075" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9788147..9796155 /note="source:INTACT905F_F31_scaffold_6-int 806 8814" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9796685..9796784 /note="source:CACAO_M_S_E4911_F76_scaffold_1 2872 2971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9796779..9797504 /note="source:CACAO_M_S_E4911_F76_scaffold_1 13502 14244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9797503..9797747 /note="source:INTACT740_F9_scaffold_10-int 1162 1401" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9797749..9799606) /note="source:CACAO_M_S_E84261_F4_scaffold_6 1 1860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9799654..9801907) /note="source:CACAO_M_S_E13904_F42_scaffold_2 849 3097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9802008..9804554 /note="source:CACAO_M_S_E122122_F42_scaffold_10 914 3459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9804822..9809471) /note="source:CACAO_M_E58440_F42_scaffold_9 1 4661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9809472..9813205 /note="source:INTACT10_F4_scaffold_6-int 3129 6871" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9813206..9813721) /note="source:scaffold_4_CACTA_0498 3157 3672" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9813982..9815191 /note="source:CACAO_M_E44087_F42_scaffold_5 777 1987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9815772..9816322 /note="source:CACAO_M_E1635_F42_scaffold_1 2566 3116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9816323..9818030) /note="source:CACAO_M_S_E84261_F4_scaffold_6 1 1710" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9818808..9821623 /note="source:CACAO_M_E53201_F9_scaffold_8 9546 12425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9822009..9822805) /note="source:CACAO_M_E50108_F4_scaffold_7 15145 15941" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9822802..9822999) /note="source:CACAO_M_S_E85177_F5_scaffold_7 933 1130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9823014..9823647 /note="source:CACAO_M_E57269_F15_scaffold_8 1 659" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9823648..9825797) /note="source:CACAO_M_S_E13904_F42_scaffold_2 946 3097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9825898..9826816 /note="source:CACAO_M_E618_F42_scaffold_1 2187 3118" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9826817..9828901 /note="source:CACAO_M_S_E52220_F15_scaffold_5 671 2754" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9828902..9829088) /note="source:INTACT189_F49_scaffold_5-int 19375 19564" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9829976..9841308 /locus_tag="TCM_028009" /note="dbxref CacaoGD:Thecc1EG028009" mRNA join(9829976..9829984,9840057..9840238,9840314..9840395, 9840688..9840811,9841139..9841308) /locus_tag="TCM_028009" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" mobile_element complement(9831099..9832233) /note="source:INTACT591_F264_scaffold_1-int 19743 20885" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9838564..9838654) /note="source:CACAO_M_S_E16386_F9_scaffold_2 2048 2136" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(9840139..9840238,9840314..9840395,9840688..9840745) /locus_tag="TCM_028009" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26410.1" /translation="MLVVGRIFKDSKNRVHAYGLILEVWWFKARQMMAMVTEDVRSYC VACGIQGKNWNVSMQYGKCISEERLPRWCIRGGDR" mobile_element 9842177..9845059 /note="source:CACAO_M_E14675_F15_scaffold_3 1 2867" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9845010..9847526 /locus_tag="TCM_028011" /note="dbxref CacaoGD:Thecc1EG028011" mRNA join(9845010..9845618,9846235..9847526) /locus_tag="TCM_028011" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is paralog weak, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.49 coverage" CDS join(9845549..9845618,9846235..9846566) /locus_tag="TCM_028011" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26411.1" /translation="MKSIDFHYLRTLEFPYEYNLKDQGKNKRLAPRMVISRLIEALET NTIVDFPIRYQDQKNIDEAIKEVQYYLIDGKWYLKNVTLAQLFEQRDIEIGDNTKHDG SGDPPSSTRMNSLIVEMENYFKDCLNKQPRE" gene complement(9846673..9849823) /locus_tag="TCM_028012" /note="dbxref CacaoGD:Thecc1EG028012" mRNA complement(join(9846673..9847323,9848153..9848284, 9849111..9849162,9849639..9849823)) /locus_tag="TCM_028012" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.61 coverage" mobile_element 9847107..9847206 /note="source:INTACT189_F49_scaffold_5-int 17812 17920" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(9847224..9847323,9848153..9848284, 9849111..9849162,9849639..9849675)) /locus_tag="TCM_028012" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26412.1" /translation="MMCVSMVSYIEVTYKIQPCLKVLIFSPFLKLNHNPSTFAWRYNQ NTTFSRRYNLQHYLFLFLRSITKYNSGLQRSIFAVGNLEFEDLEISFNSKPTSKRFGD FFHL" mobile_element 9849870..9850022 /note="source:scaffold_8_CACTA_0859 16299 16468" /mobile_element_type="transposon:TIR/CACTA" gene complement(9851267..9855126) /locus_tag="TCM_028013" /note="dbxref CacaoGD:Thecc1EG028013" mRNA complement(join(9851267..9851692,9851891..9852185, 9853791..9853958,9854931..9855126)) /locus_tag="TCM_028013" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete" CDS complement(join(9851601..9851692,9851891..9852185, 9853791..9853958,9854931..9855107)) /locus_tag="TCM_028013" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26413.1" /translation="MSVVNIENDFVLSHARLESKEIKLQPISLRRRKFDSDISRMAKF FTSLDEANDSDLKDRQRHSMENREILNRFYAKLNHCLSMEETFWQQKSCIKWLVERER NTKFFHMRMQKKRTWKRMLADSPVTKKHTRWWIGRGKLIFWHDCWMGNEPLVNLFPSF HSSMTQVCYYFDNNEWDVDKLKHVLPDEVIADILKIPSDTSSDDIAYWVPTFDAQRNP FYMSCGMAQWLNRFGIFLQNSFKSM" mobile_element complement(9855634..9860208) /note="source:INTACT177_F35_scaffold_3-int 1 4640" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9859921..9860256 /note="source:INTACT110_F35_scaffold_5-int 1 338" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(9863436..9870677) /locus_tag="TCM_028016" /note="dbxref CacaoGD:Thecc1EG028016" mRNA complement(join(9863436..9863807,9863941..9864031, 9865128..9865174,9865284..9865352,9866229..9866297, 9866940..9867017,9868304..9868386,9868651..9868730, 9869318..9869373,9870137..9870208,9870312..9870385, 9870492..9870677)) /locus_tag="TCM_028016" /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g00610.1" /inference="similar to AA sequence:Phytozome:GSVIVT01023131001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03413t00001; inference alignment:Newbler:10:TSA:cgbaP1_g03413t00001" CDS complement(join(9863736..9863807,9863941..9864031, 9865128..9865174,9865284..9865352,9866229..9866297, 9866940..9867017,9868304..9868386,9868651..9868730, 9869318..9869373,9870137..9870208,9870312..9870385, 9870492..9870627)) /locus_tag="TCM_028016" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 1" /protein_id="EOY26414.1" /db_xref="Phytozome:GSVIVT01023131001" /db_xref="TAIR:AT2G02500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0J7" /translation="MGLLHLNHSLTLTCSTSSLLVPSKPHVAAKSSPFFSHIHINFPS PGRNVELRRRARIGSCRIKCSAEVDNGSAKVKERSVSVILLAGGKGKRMGASMPKQYL PLLGQPIALYSLYTFSRMIEVKEIVVVCDPSYNDIFEETKDKINVDLKFTLPGKERQD SVYSGLQAVDSNCELVCIHDSARPLVTSGDVEKVLKDGWLVGAAVLGVPVKATIKEAN SHSYVVRTLERKTLWEMQTPQVIKPELLRKGFELVNREGLEVTDDVSIVEHLKHPVYI TEGSYTNIKVTTPDDLLLAERILNMTSSELPK" mRNA complement(join(9865039..9865165,9865276..9865352, 9866229..9866297,9866940..9867017,9868304..9868386, 9868651..9868730,9869318..9869373,9870137..9870208, 9870312..9870385,9870492..>9870570)) /locus_tag="TCM_028016" /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g00610.1" /inference="similar to AA sequence:Phytozome:GSVIVT01023131001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc798t10; inference alignment:Newbler:10:TSA:cgbaP1_g03413t00001" mRNA complement(join(9865039..9865352,9866229..9866297, 9866940..9867017,9868304..9868386,9868651..9868730, 9869318..9869373,9870137..9870208,9870312..9870385, 9870492..>9870570)) /locus_tag="TCM_028016" /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g00610.1" /inference="similar to AA sequence:Phytozome:GSVIVT01023131001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc798t7; inference alignment:Newbler:10:TSA:cgbaP1_g03413t00001" mRNA complement(join(9865039..9865165,9865276..9865352, 9866229..9866297,9866940..9867017,9868304..9868386, 9868651..9868730,9869318..9869373,9870137..9870226, 9870312..9870385,9870492..>9870570)) /locus_tag="TCM_028016" /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g00610.1" /inference="similar to AA sequence:Phytozome:GSVIVT01023131001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc798t5; inference alignment:Newbler:10:TSA:cgbaP1_g03413t00001" CDS complement(join(9865153..9865165,9865276..9865352, 9866229..9866297,9866940..9867017,9868304..9868386, 9868651..9868730,9869318..9869373,9870137..9870208, 9870312..9870385,9870492..>9870570)) /locus_tag="TCM_028016" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 4" /protein_id="EOY26417.1" /db_xref="Phytozome:GSVIVT01023131001" /db_xref="TAIR:AT2G02500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0J7" /translation="LVPSKPHVAAKSSPFFSHIHINFPSPGRNVELRRRARIGSCRIK CSAEVDNGSAKVKERSVSVILLAGGKGKRMGASMPKQYLPLLGQPIALYSLYTFSRMI EVKEIVVVCDPSYNDIFEETKDKINVDLKFTLPGKERQDSVYSGLQAVDSNCELVCIH DSARPLVTSGDVEKVLKDGWLVGAAVLGVPVKATIKEANSHSYVVRTLERKTLWEMQT PQVYFQSC" CDS complement(join(9865153..9865165,9865276..9865352, 9866229..9866297,9866940..9867017,9868304..9868386, 9868651..9868730,9869318..9869373,9870137..9870226, 9870312..9870385,9870492..>9870570)) /locus_tag="TCM_028016" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 2" /protein_id="EOY26415.1" /db_xref="Phytozome:GSVIVT01023131001" /db_xref="TAIR:AT2G02500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0J7" /translation="LVPSKPHVAAKSSPFFSHIHINFPSPGRNVELRRRARIGSCRIK CSAEVDNLLVCTQGSAKVKERSVSVILLAGGKGKRMGASMPKQYLPLLGQPIALYSLY TFSRMIEVKEIVVVCDPSYNDIFEETKDKINVDLKFTLPGKERQDSVYSGLQAVDSNC ELVCIHDSARPLVTSGDVEKVLKDGWLVGAAVLGVPVKATIKEANSHSYVVRTLERKT LWEMQTPQVYFQSC" CDS complement(join(9865227..9865352,9866229..9866297, 9866940..9867017,9868304..9868386,9868651..9868730, 9869318..9869373,9870137..9870208,9870312..9870385, 9870492..>9870570)) /locus_tag="TCM_028016" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 3" /protein_id="EOY26416.1" /db_xref="Phytozome:GSVIVT01023131001" /db_xref="TAIR:AT2G02500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0J7" /translation="LVPSKPHVAAKSSPFFSHIHINFPSPGRNVELRRRARIGSCRIK CSAEVDNGSAKVKERSVSVILLAGGKGKRMGASMPKQYLPLLGQPIALYSLYTFSRMI EVKEIVVVCDPSYNDIFEETKDKINVDLKFTLPGKERQDSVYSGLQAVDSNCELVCIH DSARPLVTSGDVEKVLKDGWLVGAAVLGVPVKATIKEANSHSYVVRTLERKTLWEMQT PQVYLLKEIIYHITIFLRML" mobile_element 9874166..9875181 /note="source:CACAO_M_S_E4413_F3_scaffold_1 17501 18472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9879753..9891264 /note="source:INTACT199_F5_scaffold_6-int 1 16964" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9888629..9927788 /locus_tag="TCM_028019" /note="dbxref CacaoGD:Thecc1EG028019" mRNA join(9888629..9888652,9894234..9894304,9894454..9895000, 9895545..9895876,9896112..9896568,9896650..9897023, 9897114..9897180,9898093..9898241,9902658..9902743, 9904715..9904819,9904922..9905019,9905406..9905526, 9905848..9906030,9906131..9906323,9906441..9907012, 9909955..9910117,9910267..9910544,9910636..9910823, 9911811..9911887,9911980..9912320,9912825..9912893, 9913001..9913319,9913526..9913651,9921969..9922077, 9922178..9922249,9922366..9922489,9924236..9924343, 9925030..9925167,9926765..9926938,9927024..9927788) /locus_tag="TCM_028019" /product="Suppressor of auxin resistance1, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01015912001" /inference="similar to AA sequence:Phytozome:GSVIVT01015912001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc891t2" mobile_element complement(9891906..9892420) /note="source:CACAO_M_E58843_F33_scaffold_9 2367 2882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9892784..9894332) /note="source:CACAO_M_E33422_F33_scaffold_4 527 2074" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9894433..9894936 /note="source:CACAO_M_E12297_F14_scaffold_3 14453 14956" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(9896378..9896568,9896650..9897023,9897114..9897180, 9898093..9898241,9902658..9902743,9904715..9904819, 9904922..9905019,9905406..9905526,9905848..9906030, 9906131..9906323,9906441..9907012,9909955..9910117, 9910267..9910544,9910636..9910823,9911811..9911887, 9911980..9912320,9912825..9912893,9913001..9913319, 9913526..9913651,9921969..9922077,9922178..9922249, 9922366..9922489,9924236..9924343,9925030..9925167, 9926765..9926938,9927024..9927065) /locus_tag="TCM_028019" /codon_start=1 /product="Suppressor of auxin resistance1, putative" /protein_id="EOY26418.1" /db_xref="Phytozome:GSVIVT01015912001" /db_xref="TAIR:AT1G33410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HR72" /translation="MRVAGMEVPIIGSDSIKWIGLTVPSSLNRIDNGGNDGAATFAPP TVDSASATYFDGDSPFHLIWRLHKTQSNVLEIFKLSQEFPLNSGLRLIFCHPLSPFAF ISTSPTDSHYLLYTLTVSGIAYFIKISKDLASIVSRDELIELDVRDYSNSNEPITCIA AKPGCLLLGRNDGSVTCFRLGLLHQTAPGFVYELRDDSGISLGRLWGFMSRGRAVGAV QDLIITEMHGKEIVFVLHGDGILRAWDLSSHTRILSHSTAVEGTTSTRLWLGESNNNS KIVPLAILYKRTLEVGMEMIYIYSLCYGTGDRMILSVDSSVKSFPVDEGGCIDVKLTS DKIWILKDNGLGYHHLFHRSSTTEEAHCYALQEEFIADQLFQSLEHTSDDLISIARSI FSSGKDHIVPFVSSIFLRRLLHPGVCQNIVLRATFLDYRKHWTDNEFQSLTVDGLKKE ILSLVEHESIAESPISIFQGWKNFCCRYFECWCKNNAPYCLIVQSTSGAVGLIRKHSV SLFRGLENAELLIDGLSEDLGDLVSFGLDLFDDSSDREILFEVLRCVINISQQLGKTA SFIFYESFVGRQIISSEEIVPRLVKILETGYGSSTGVGHVSGLGADVAWERELIDHKN LRKFSVDMLVSLHVLCKKAASWKKVLDVIESYLQFLVPQKFTQDPGAETLSCLNNSIL VQASCQIAKFMFESALDILLFVSYLMNIGGQINMTHDDISRIQLELVPMIDEIISEWL IILFFSTTPSESPATEDFSSQLSLLQIDNNINKRSWIEKLGKCDFTLASLLLLNSQSS SGYERCLSLGCLPDPHDVISSVQKFTSWIVWGNTGEVSSSFLRRSTELAIVLLRHGQY DAVEYLLTTVEAKARGEKIFRSIQDTSGDWCLLQHILGCCLLAQTQRGLHGILKERKV CEAVCCFFRAASGEGASQALQSLSQESGLLYLGFNGHVSAAWKLHYYQWAMQLFEQYN ISEGACQFALAALEQVDALNLRGDGYERDPSNESATTIKGRLWANLFKFTLDLNLLND AYCAILSNPDEESKYICLRRFIIVLYERGAIKILCNGQLPFIGLADKIEQELAWKAER TDILAKPNPYKLLYAFEMHRHNWRRAASYIYLYSARLQTESILKDQQHMSVTLHERLN ALSAAVNALHLVHPAYAWIDSLPEGHPLQNDHYPSKKAKRTVKEQSGNDVRAQRLQFY VDIEKLENEFMLTSAEYLLSLANIKWTYSDIQKAPSDLVELLVQTNLYDMAFAVLLKF WKDSELKRELEKIFSAMSLKCCPSTVSLSWTGAHNLLLTSSKDEVVVHGSPDMAPTAQ QTKANCHWETLEHYLEKYKYIHARLPLVVAETLLRTDPHIELPLWLVKMFKESQRRSW GMTGPDPSPASLFRLYADYGRYIEATNLFLEYVEAFASMRPVDIINRKRPSAVWFPYN TLEQLWCQLDGLINLGHMVDQCDKLKRLLHGALLNHLKQLKVDSDDAVSSAS" gene complement(9916449..9920472) /locus_tag="TCM_028021" /note="dbxref CacaoGD:Thecc1EG028021" mRNA complement(join(9916449..9916838,9916942..9916988, 9917048..9917316,9917400..9917585,9918822..9918954, 9919032..9919611,9920352..9920472)) /locus_tag="TCM_028021" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage" CDS complement(join(9916838,9916942..9916988,9917048..9917316, 9917400..9917585,9918822..9918954,9919032..9919484)) /locus_tag="TCM_028021" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26419.1" /translation="MRVVFGWLSGLDSEYDVIHSQVLANKVVSSLFDVVTTVLSTKES VFSTSDVPNRSALVSQGTNEFGNGYRRGSSEGRGNFGGSHGGKGTGGSGGPRVCYNYR EKVTSGISTLNPYRDNKIIIINLLHKGNKNNYSSIRSPLNLLMQHHKLAKSQQPSSSF IATLVKSSNPTTCLSSLSRHWVIDSGAIDHMTRNSVSTPSLDTPSSSSRPLITQLYTC RHGTDAAVPQPVDTMSDSLLVPTSMSLDSDLDLLIALRKVSQHGIHDLKVFLQAKFQT KDLGSLKYFLGIKVTRSKKGIFLSQRKYVVELLKDVGLLREKPCETPIDSSVKLIARD REAFADLEKYRRLEVNSCQHLLLFIRML" mobile_element 9932119..9933494 /note="source:INTACT670_F33_scaffold_3-int 8035 9409" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9933595..9935136 /note="source:INTACT670_F33_scaffold_3-int 9447 10990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9935267..9935289 /note="source:CACAO_M_E53587_F207_scaffold_8 8539 8560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9935290..9938339) /note="source:CACAO_M_S_E97714_F207_scaffold_8 290 3338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9938337..9938742) /note="source:CACAO_M_E9978_F12_scaffold_2 8770 9040" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9938743..9939241 /note="source:CACAO_M_E85187_F15_scaffold_10 1 480" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9940030..9940332 /note="source:CACAO_M_E294_F134_scaffold_1 8972 9273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9940433..9940974) /note="source:CACAO_M_E4554_F15_scaffold_2 934 1476" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9941075..9949222 /note="source:CACAO_M_E86338_F15_scaffold_15 2154 10313" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9949323..9950168) /note="source:INTACT626_F15_scaffold_10-int 1 847" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9950511..9950882) /note="source:CACAO_M_E23349_F15_scaffold_4 2730 3101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9953221..9953612) /note="source:INTACT139F_F15_scaffold_2-int 7691 8083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9954771..9956628 /note="source:CACAO_M_E44425_F33_scaffold_6 24274 26112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9959205..9960539 /note="source:CACAO_M_S_E5046_F335_scaffold_1 2616 3955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9961867..9966826 /note="source:CACAO_M_S_E84840_F51_scaffold_7 1404 6384" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9968134..9969264) /note="source:CACAO_M_E57360_F323_scaffold_9 2306 3437" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9969365..9971139 /note="source:CACAO_M_E530_F323_scaffold_1 1144 2916" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9973745..9976334) /note="source:INTACT132_F12_scaffold_9-int 8356 11442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9978005..9978027) /note="source:CACAO_M_E69737_F323_scaffold_9 3307 3378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9978028..9978081) /note="source:scaffold_4_CACTA_0494 10901 10954" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9978035..9978367 /note="source:CACAO_M_E44570_F33_scaffold_6 80 440" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9978070..9981042) /note="source:CACAO_M_E530_F323_scaffold_1 1 2998" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9984989..10001795) /locus_tag="TCM_028025" /note="dbxref CacaoGD:Thecc1EG028025" mRNA complement(join(9984989..9985219,9994328..9994854, 9996600..9996748,9999059..9999144,9999708..9999957, 10000581..10001192,10001765..10001795)) /locus_tag="TCM_028025" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage" mobile_element 9993623..9993837 /note="source:INTACT585_F12_scaffold_8-int 11472 11688" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(9994765..9994854,9996600..9996748, 9999059..9999144,9999708..9999957,10000581..10001192, 10001765..10001768)) /locus_tag="TCM_028025" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26420.1" /translation="MERVNMSENGSRYGIVSPLERFRERESPVMDLRVSLNLRHNQLG KKKERGLLEGNEGQRRKEAGREIGRETKELQARLKENMLKKEENSFEDGATLREMLKA VSKRRKEKGKGKVEDPDGTDMLKQNNRVEESADEIENRALTIDMTGKLHIKRLNKCPN SNSVMGGTSKRRERNIMIENSIRPWSYYENKRDKGEETMIPVKNRGDRRAMWERLKLD MESFDGKLCIGGNFNTVCYEEERIGRGDIERLAVSFNDFINVLGLMDLPLEGGKFTWC NYKEQAAFSCLDRLEEIKKGVAEYFKKFYEQQNILRVKNIHSKWPREYGTILSTFIKP SVGAALKKAKKARTEIEWEKVMEGTMKFNVDGAANIVETAMAMGIRWKGAFRMLLCGS GSMG" mobile_element complement(10004451..10005500) /note="source:CACAO_M_E58684_F78_scaffold_9 1812 2855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10005607..10010479) /note="source:CACAO_M_E58684_F78_scaffold_9 4820 9745" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10008406..10965443 /locus_tag="TCM_028027" /note="dbxref CacaoGD:Thecc1EG028027" mRNA join(10008406..10008599,10008729..10008994, 10378339..10378375,10961522..10962392,10965159..10965443) /locus_tag="TCM_028027" /product="DNA/RNA polymerases superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035772t1" /inference="similar to AA sequence:Phytozome:Glyma18g33480.1" /note="quality class is strong-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2402t1_G3" mobile_element 10010480..10013451 /note="source:CACAO_M_E3626_F245_scaffold_1 1 2940" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10013457..10013693) /note="source:INTACT582_F262_scaffold_3-int 7798 8035" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10013683..10014025 /note="source:INTACT582_F262_scaffold_3-int 5840 6184" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10013996..10014204) /note="source:INTACT454F_F360_scaffold_4-int 1 208" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10014020..10016971 /note="source:CACAO_M_S_E67889_F15_scaffold_6 1 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10016972..10019654) /note="source:CACAO_M_E58684_F78_scaffold_9 1812 4490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10019762..10021563 /note="source:INTACT624_F277_scaffold_2-int 15250 17063" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10025072..10025167) /note="source:INTACT189_F49_scaffold_5-int 18486 18578" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10030028..10030324) /note="source:scaffold_8_CACTA_0859 17641 17937" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10030327..10030860) /note="source:scaffold_8_CACTA_0859 16513 17041" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10032338..10035309 /note="source:CACAO_M_E45274_F143_scaffold_6 1 2972" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10035880..10036237 /note="source:CACAO_M_E49857_F85_scaffold_7 20685 21042" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10036338..10039272 /note="source:INTACT446_F218_scaffold_9-int 4005 6956" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 10039797..10042751 /note="source:CACAO_M_E45277_F33_scaffold_6 1 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10044105..10045750 /note="source:CACAO_M_S_E51867_F7_scaffold_4 3 1651" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10045729..10045752 /note="source:INTACT186_F165_scaffold_12-int 7667 7696" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10045753..10046387) /note="source:CACAO_M_E44599_F33_scaffold_6 6949 7583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10046505..10047432) /note="source:CACAO_M_E12297_F14_scaffold_3 7706 8634" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10048213..10048828) /note="source:CACAO_M_E12297_F14_scaffold_3 6345 6961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10048816..10054136 /note="source:CACAO_M_S_E4555_F7_scaffold_1 1633 6938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10054137..10056266) /note="source:CACAO_M_E49857_F85_scaffold_7 22648 23879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10056267..10057276 /note="source:INTACT584_F15_scaffold_3-int 1 1009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10059446..10060919 /note="source:scaffold_4_CACTA_0494 8728 10218" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10061357..10061456 /note="source:scaffold_4_CACTA_0494 10852 10951" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10062622..10064308) /note="source:CACAO_M_E9677_F7_scaffold_2 7729 9415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10064409..10064809) /note="source:INTACT213F_F15_scaffold_3-int 798 1199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10073237..10073801 /note="source:INTACT201_F33_scaffold_5-int 7633 8197" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10074481..10076400) /note="source:CACAO_M_E59041_F15_scaffold_9 1 1922" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10076401..10077022 /note="source:INTACT201_F33_scaffold_5-int 8934 9555" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10077021..10077975 /note="source:CACAO_M_E35176_F7_scaffold_5 1977 2929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10078375..10078414 /note="source:INTACT585_F12_scaffold_8-int 1 42" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10078447..10079530) /note="source:CACAO_M_E52239_F256_scaffold_7 23936 25002" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10080506..10086270 /locus_tag="TCM_028032" /note="dbxref CacaoGD:Thecc1EG028032" mRNA join(10080506..10080548,10081884..10082353, 10082565..10082645,10084251..10084355,10084502..10084651, 10085708..10086270) /locus_tag="TCM_028032" /product="Proton gradient regulation 7 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016137001" /inference="similar to AA sequence:Phytozome:POPTR_0010s25670.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05240t00001" mobile_element 10080741..10080839 /note="source:INTACT277_F12_scaffold_9-int 16926 17009" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(10081994..10082353,10082565..10082645, 10084251..10084355,10084502..10084651,10085708..10085950) /locus_tag="TCM_028032" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Proton gradient regulation 7 isoform 1" /protein_id="EOY26422.1" /db_xref="Phytozome:POPTR_0010s25670.1" /db_xref="TAIR:AT3G21200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVD2" /translation="MNLQTQPLSTRFLLPLFPPKPKSLPPKQTPFPRISLTLCSLSTV SDPTTTHANHKPFPAEVSRTIMELSCMGTLSTLAQDGWPFGVGVRFAVDAEGTPVLCL DQASRQLSVDKRSTLHVQLEQCGLRTPQCTIQGSLDKPADATVLRRLHSVWKKRFGEV ADEDSLYIVDAERVLQMEDFNEDGVWVTSSAYRNANPDPLRDFAEGIVKEINTNNMED VLRFCNIYVDLDFQVLEAKMIWVDRLGFDVRIYSPQKGVFDVRIPFPQEVTDEKGAKS SFNGMSQLAWEVEKNFHVPDFEKVKQLKQITYSGVQ" mRNA join(<10082297..10082353,10082574..10082645, 10084251..10084355,10084502..10084651,10085708..10086223) /locus_tag="TCM_028032" /product="Proton gradient regulation 7 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016137001" /inference="similar to AA sequence:Phytozome:GSVIVT01016137001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc691t3; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc680t6; inference alignment:Newbler:10:TSA:cgbaB_g01333t00001" CDS join(<10082297..10082353,10082574..10082645, 10084251..10084355,10084502..10084651,10085708..10085950) /locus_tag="TCM_028032" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Proton gradient regulation 7 isoform 2" /protein_id="EOY26423.1" /db_xref="Phytozome:GSVIVT01016137001" /db_xref="TAIR:AT3G21200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVD2" /translation="LDQASRQLSVDKRSTLHVQCGLRTPQCTIQGSLDKPADATVLRR LHSVWKKRFGEVADEDSLYIVDAERVLQMEDFNEDGVWVTSSAYRNANPDPLRDFAEG IVKEINTNNMEDVLRFCNIYVDLDFQVLEAKMIWVDRLGFDVRIYSPQKGVFDVRIPF PQEVTDEKGAKSSFNGMSQLAWEVEKNFHVPDFEKVKQLKQITYSGVQ" mobile_element complement(10087453..10087974) /note="source:scaffold_1_CACTA_0009 13264 13847" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10087938..10088258) /note="source:CACAO_Mutator_E1149_scaffold_5 13402 13722" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(10088088..10088350) /note="source:scaffold_1_CACTA_0009 12884 13203" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10088155..10100057 /note="source:CACAO_on_E193_scaffold_6 1 11903" /mobile_element_type="transposon:TIR/Mutator" mobile_element 10099807..10100088 /note="source:scaffold_1_CACTA_0009 12935 13203" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10099864..10100249) /note="source:CACAO_Mutator_E1149_scaffold_5 1 354" /mobile_element_type="transposon:TIR/Mutator" mobile_element 10100277..10101590 /note="source:CACAO_M_E33977_F20_scaffold_4 15225 16541" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10102915..10105789 /locus_tag="TCM_028037" /note="dbxref CacaoGD:Thecc1EG028037" mRNA join(10102915..10103210,10103391..10103415, 10103515..10103581,10103757..10104045,10104463..10104505, 10104609..10105789) /locus_tag="TCM_028037" /product="GC-rich sequence DNA-binding factor-like protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044376t2" /inference="similar to AA sequence:frave:gene03876" /note="quality class is medium, express is medium, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc4009t5_C2" CDS join(10103396..10103415,10103515..10103581, 10103757..10104045,10104463..10104505,10104609..10104813) /locus_tag="TCM_028037" /note="dbxref frave:gene03876; paralog of Thecc1EG044376t2" /codon_start=1 /product="GC-rich sequence DNA-binding factor-like protein, putative" /protein_id="EOY26424.1" /db_xref="TAIR:AT5G08550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNN3" /translation="MKGIAASEALAELLVTIRTGLSEAVAYIMVPTWSPLVMKAEPNA ALVAAYQFGMSVRLMRNICFWKEILALPVLEKLALDDLLYGKILPHVRNITSDVQYAV KRTERIVASLSGCGQAQMPHKIPAVFLCFHFLRDIYCKNLCSHKLQPLVDCVLLLGKT LERRLAYGVTESETGGLARRLKKMLVERNEYDSARDIARRFHLKEAF" gene complement(10105794..10132946) /locus_tag="TCM_028038" /note="dbxref CacaoGD:Thecc1EG028038" mRNA complement(join(10105794..10105976,10106709..10109296, 10132854..10132946)) /locus_tag="TCM_028038" /product="Exocyst subunit exo70 family protein G1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036831t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s25700.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1906t1" CDS complement(10107127..10109103) /locus_tag="TCM_028038" /note="paralog of Thecc1EG036831t1" /codon_start=1 /product="Exocyst subunit exo70 family protein G1, putative" /protein_id="EOY26425.1" /db_xref="Phytozome:POPTR_0010s25700.1" /db_xref="TAIR:AT4G31540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H2V1" /translation="MAEVESFDNLLASRKLLETSLENSRALALALDKTGPRLVEIDRK LAFLEAAIRPSSSKNCTFAAIRDHVSLALGPAVAVLKIFNSIRELEKSLFSGPFSDLS SYLSTIRQLEGALKFLTGSCNLAIQWLEGVMEFLEDNSVANGKYIVNLRRSLTILQEL QATGEHACLSGAFDKLEISFKQILADNSVPLALACLTAEQACDAATPFPVPILQKLQA IVERLNASNRLEKCMSIFVEVRSLNTRKSLQALDLAYLEKAITDFDDVQDMERCIEEW SKHMEFIVKHVLEHEHRLCKEVFGSTASGVWMDCYAKIAAQSGILSFLQFGMSIAESK NCPIKLLNLLRIFSVLENLRMDFNKLFGGEACVEIKTMTSDLVTKVVNGASEIFWELP VQVELERQSYPPKDGGIPRLVSFVTGYCNQLLDDKYRPVLTQVLKICHGWKHEKYEEG LVTNQIYSIVREIAVNLDAWSKAYDQRPLSYIFMLNNHSHFHSLKGTELGNLMGDSWL SAHGQYKEYYSALYLRESWGKLLTCLSQDNPVSSDLPKRLKAFNEAVDDMYNKQSNWV IFDESLRQKMHQLVVQALVPAYRSYLQKHSLLVEHSDTTSRTVKYTAKSLENMLNTLF QPRQIKYRSTIDSHFTGKQRNTETNQFRLTLTAV" mobile_element 10118064..10118458 /note="source:CACAO_M_E45286_F33_scaffold_6 1 395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10119313..10121016 /note="source:CACAO_M_E45286_F33_scaffold_6 396 2099" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10120906..10121040) /note="source:CACAO_M_E52278_F17_scaffold_7 4348 4481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10122031..10123737) /note="source:CACAO_M_E49746_F53_scaffold_7 911 2618" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10123838..10124720 /note="source:scaffold_5_CACTA_0586 5570 6452" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10124865..10127800 /note="source:CACAO_M_E45290_F33_scaffold_6 1 2936" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10133218..10138078 /locus_tag="TCM_028039" /note="dbxref CacaoGD:Thecc1EG028039" mRNA join(10133218..10133490,10134288..10134438, 10134602..10134672,10136074..10136159,10136344..10136923, 10137356..10138078) /locus_tag="TCM_028039" /product="O-fucosyltransferase family protein" /inference="alignment:exonerate- protein:2:ricco:29578.m000201" /inference="similar to AA sequence:ricco:29578.m000201" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc183t2" CDS join(10133389..10133490,10134288..10134438, 10134602..10134672,10136074..10136159,10136344..10136923, 10137356..10137634) /locus_tag="TCM_028039" /note="dbxref ricco:29578.m000201" /codon_start=1 /product="O-fucosyltransferase family protein" /protein_id="EOY26426.1" /db_xref="TAIR:AT1G51630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HV39" /translation="MGVDLRQVVAAILTLTMFVMLGQMIKRDHFDSLQDKLPGEAQDS QFDNTNVIENDGLVKLSKRSKGPWIDDSQELKPCWSKTAFDEIEQPRGYVTFSLTNGP EYHVSQIADAVVVARYLGATLVLPDIRGSKPGDVNNFQDIYDVEKFMKSLDGVVKVAK ELPNEISIRDLAAVKVPNRVTEDHIVENVEPIFKSKGNIRLATYFPTVNMRKTAQKSS VDSVACLGMFGTLELQPQVNEVVDLMIERLKTLSRKSDGQFIAVDLRVEILENKNCHG SGSTGAKSCYNAQEIALFLRKVGFDTDTTIYLTQSRWDSSLSVLKDIFPKTYTKESIM PEEKKGKFLESEDSEFEKVIDFYICSQSDVFVPAISGLFYANVAGKRIASGKPQILVP ADIPGTSAAITNYLSPYVSKKNHLAYSCFC" gene complement(10138571..10141960) /locus_tag="TCM_028040" /note="dbxref CacaoGD:Thecc1EG028040" mRNA complement(join(10138571..10138599,10141111..10141232, 10141692..10141777,10141909..10141960)) /locus_tag="TCM_028040" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage" CDS complement(join(10141154..10141232,10141692..10141777, 10141909..10141959)) /locus_tag="TCM_028040" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26427.1" /translation="MKRTTNKALVLWETPPPGWLKFTMNVVVNGYPRQIGIRGYYVMM LSYGEIGFLILYRKASFVYFSLYCSFF" mobile_element 10146836..10154712 /note="source:CACAO_M_E12058_F3_scaffold_2 1 7880" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10154712..10155058 /note="source:INTACT607_F3_scaffold_4-int 13513 13859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10155407..10155696 /note="source:INTACT607_F3_scaffold_4-int 7801 8089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10155437..10158115) /note="source:CACAO_M_E43311_F15_scaffold_5 297 2979" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10158116..10159608 /note="source:CACAO_M_E51617_F15_scaffold_7 1 1510" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10159711..10169482) /note="source:INTACT584_F15_scaffold_3-int 1 9758" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10169483..10169782 /note="source:CACAO_M_E22474_F15_scaffold_3 2673 2979" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10170302..10178269) /locus_tag="TCM_028043" /note="dbxref CacaoGD:Thecc1EG028043" mRNA complement(join(10170302..10170841,10172458..10173201, 10177765..10178098)) /locus_tag="TCM_028043" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s23980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042206t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s23980.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc123t2; inference alignment:Newbler:10:TSA:cgbaB_g08198t00001" mRNA complement(join(10170417..10170841,10172370..10173201, 10177765..10178269)) /locus_tag="TCM_028043" /product="Cinnamoyl-CoA reductase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s23980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042206t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s23980.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01009t00001; alternateUTRof:Thecc1EG028043t1; inference alignment:Newbler:10:TSA:cgbaB_g08198t00001" mRNA complement(join(10170421..10170841,10172370..10173201, 10177765..10177935,10178093..10178268)) /locus_tag="TCM_028043" /product="Cinnamoyl-CoA reductase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s23980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042206t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s23980.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08198t00001" CDS complement(join(10170676..10170841,10172370..10173201, 10177765..10177786)) /locus_tag="TCM_028043" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042206t1" /codon_start=1 /product="Cinnamoyl-CoA reductase, putative isoform 1" /protein_id="EOY26428.1" /db_xref="Phytozome:POPTR_0004s23980.1" /db_xref="TAIR:AT2G02400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S058" /translation="MISSNYLANAKEAVCVTGANGFIGSWLVRTLLEDGYTRIHASIY PGSDASHLFSLPGATSPNVRLEVYEADILDYTSVLKAVEGCQGVFHVASPCSLEDPKD PHRELVMPAVQGTLNVLEAARTAKVRRVVLTSSISAIVPNPNWDPETKGSFDESSWTD VEYCKSRQKWYPVSKTLAEKAAWEYAEKHGMDVVAINPATCLGPLLQPSLNASSAVLQ QLLQGSQDTQEHHWLGAVHVRDVAKAQILLFNAPAASGRYLCTNGIYQFAHFAQTVSH LFPHYPVHRFTGETQPGLVSCKDAAKRLMKLGLDFTPVEEAVREAVESMQAKGFLKPP QMLES" CDS complement(join(10170676..10170841,10172370..10173201, 10177765..10177786)) /locus_tag="TCM_028043" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG042206t1" /codon_start=1 /product="Cinnamoyl-CoA reductase, putative isoform 1" /protein_id="EOY26430.1" /db_xref="Phytozome:POPTR_0004s23980.1" /db_xref="TAIR:AT2G02400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S058" /translation="MISSNYLANAKEAVCVTGANGFIGSWLVRTLLEDGYTRIHASIY PGSDASHLFSLPGATSPNVRLEVYEADILDYTSVLKAVEGCQGVFHVASPCSLEDPKD PHRELVMPAVQGTLNVLEAARTAKVRRVVLTSSISAIVPNPNWDPETKGSFDESSWTD VEYCKSRQKWYPVSKTLAEKAAWEYAEKHGMDVVAINPATCLGPLLQPSLNASSAVLQ QLLQGSQDTQEHHWLGAVHVRDVAKAQILLFNAPAASGRYLCTNGIYQFAHFAQTVSH LFPHYPVHRFTGETQPGLVSCKDAAKRLMKLGLDFTPVEEAVREAVESMQAKGFLKPP QMLES" CDS complement(join(10170813..10170841,10172458..10173201, 10177765..10177786)) /locus_tag="TCM_028043" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042206t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /protein_id="EOY26429.1" /db_xref="Phytozome:POPTR_0004s23980.1" /db_xref="TAIR:AT2G02400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S058" /translation="MISSNYLANAKEAVCVTGANGFIGSWLVRTLLEDGYTRIHASIY PGSDASHLFSLPGATSPNVRLEVYEADILDYTSVLKAVEGCQGVFHVASPCSLEDPKD PHRELVMPAVQGTLNVLEAARTAKVRRVVLTSSISAIVPNPNWDPETKGSFDESSWTD VEYCKSRQKWYPVSKTLAEKAAWEYAEKHGMDVVAINPATCLGPLLQPSLNASSAVLQ QLLQGSQDTQEHHWLGAVHVRDVAKAQILLFNAPAASGLLGKHNQA" gene 10182011..10189632 /locus_tag="TCM_028044" /note="dbxref CacaoGD:Thecc1EG028044" mRNA join(10182011..10182300,10182371..10182462, 10182538..10182598,10189485..10189632) /locus_tag="TCM_028044" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc6258t2" CDS join(10182171..10182300,10182371..10182438) /locus_tag="TCM_028044" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26431.1" /translation="MRFPPSSCRFVLFHHPRSLQYSREKPWSVDGGVKLSFVIQARKA AKISLIGEDLVTCKAIKIVGA" mobile_element 10185072..10187786 /note="source:CACAO_M_E22484_F328_scaffold_3 11522 14253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10187710..10187803) /note="source:INTACT1332F_F13_scaffold_8-int 3529 3615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10188577..10188989 /note="source:INTACT39F_F22_scaffold_1-int 3821 4232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10189769..10190354 /note="source:INTACT39F_F22_scaffold_1-int 5268 5869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10191727..10193061 /note="source:CACAO_M_S_E5046_F335_scaffold_1 2616 3955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10194672..10195142 /note="source:INTACT39F_F22_scaffold_1-int 3827 4249" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10195920..10196503 /note="source:INTACT39F_F22_scaffold_1-int 5268 5869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10197209..10197457 /note="source:INTACT39F_F22_scaffold_1-int 6792 7025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10197458..10199462 /note="source:CACAO_M_E10243_F73_scaffold_2 1 1998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10199563..10200283) /note="source:CACAO_M_E49849_F73_scaffold_7 1 722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10200945..10201152 /note="source:scaffold_6_CACTA_0700 7285 7482" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10201106..10201220) /note="source:CACAO_on_SS_E135_scaffold_10 1778 1889" /mobile_element_type="transposon:TIR/Mutator" mobile_element 10201221..10203214 /note="source:CACAO_hAT_E3311_scaffold_8 1 2045" /mobile_element_type="transposon:TIR/hAT" mobile_element 10203232..10203807 /note="source:CACAO_hAT_E3311_scaffold_8 3010 3579" /mobile_element_type="transposon:TIR/hAT" mobile_element 10203727..10203806 /note="source:INTACT219_F174_scaffold_9-int 3586 3653" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10203807..10206728 /note="source:CACAO_M_E45301_F72_scaffold_6 1 2922" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10206729..10207330 /note="source:CACAO_hAT_E3311_scaffold_8 3574 4157" /mobile_element_type="transposon:TIR/hAT" mobile_element 10207370..10207434 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3870 3935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10209764..10209800) /note="source:CACAO_M_S_E16721_F36_scaffold_2 4335 4371" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10217233..10218966 /note="source:CACAO_M_S_E32860_F3_scaffold_4 1 1744" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10223501..10223571) /note="source:CACAO_M_S_E16543_F3_scaffold_2 4780 4849" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10223505..10223549 /note="source:CACAO_M_E34409_F73_scaffold_5 2275 2319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10223614..10227012) /note="source:INTACT662_F291_scaffold_4-int 1254 4698" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10227012..10230116 /note="source:scaffold_6_CACTA_0711 4272 6596" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10230112..10230462) /note="source:INTACT662_F291_scaffold_4-int 913 1263" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10230462..10230920 /note="source:CACAO_M_E13604_F90_scaffold_3 8600 9060" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10230914..10232626 /note="source:CACAO_M_E1841_F5_scaffold_1 13929 15161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10232622..10232884) /note="source:INTACT662_F291_scaffold_4-int 658 925" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(10233334..10260763) /locus_tag="TCM_028049" /note="dbxref CacaoGD:Thecc1EG028049" mRNA complement(join(10233334..10234374,10234704..10234795, 10235748..10235855,10236072..10236209,10236388..10236433, 10237440..10237540,10238557..10238694,10238827..10238925, 10239428..10239544,10239666..10239830,10240039..10240098, 10241193..10241360,10242603..10242713,10244668..10244766, 10244847..10244912,10245389..10245526,10246889..10246972, 10247079..10247121,10247249..10247304,10248509..10248617, 10248703..10248785,10248869..10248952,10250294..10250365, 10250442..10250519,10250600..10250683,10250777..10250847, 10251060..10251129,10251886..10251975,10252075..10252206, 10252296..10252411,10255400..10255439,10255522..10255638, 10258689..10258969,10259370..10259828)) /locus_tag="TCM_028049" /product="Autoinhibited Ca(2+)-ATPase 9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g23760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039616t3" /inference="similar to AA sequence:Phytozome:POPTR_0010s25730.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc44t29" mRNA complement(join(10233710..10234374,10234704..10234795, 10235748..10235855,10236072..10236209,10236388..10236433, 10237440..10237540,10238557..10238694,10238827..10238925, 10239428..10239544,10239666..10239830,10240039..10240098, 10241193..10241360,10242603..10242713,10244668..10244766, 10244847..10244912,10245389..10245526,10246889..10246972, 10247079..10247121,10247249..10247304,10248509..10248617, 10248703..10248785,10248869..10248952,10250294..10250365, 10250442..10250519,10250600..10250683,10250777..10250847, 10251060..10251129,10251886..10251975,10252075..10252206, 10252296..10252411,10255400..10255439,10255522..10255638, 10258689..10258969,10259370..10260763)) /locus_tag="TCM_028049" /product="Autoinhibited Ca(2+)-ATPase 9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g23760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039616t3" /inference="similar to AA sequence:Phytozome:POPTR_0010s25730.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3361t5; alternateUTRof:Thecc1EG028049t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc44t29" mRNA complement(join(10233710..10234374,10234704..10234795, 10235748..10235855,10236072..10236212,10236388..10236433, 10237440..10237540,10238557..10238694,10238827..10238925, 10239428..10239544,10239666..10239830,10240039..10240098, 10241193..10241360,10242603..10242713,10244668..10244766, 10244847..10244912,10245389..10245526,10246889..10246972, 10247079..10247121,10247249..10247304,10248509..10248617, 10248703..10248785,10248869..10248952,10250294..10250365, 10250442..10250519,10250600..10250683,10250777..10250847, 10251060..10251129,10251886..10251975,10252075..10252206, 10252296..10252411,10255400..10255439,10255522..10255638, 10258689..10258969,10259370..10260763)) /locus_tag="TCM_028049" /product="Autoinhibited Ca(2+)-ATPase 9 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g23760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039616t3" /inference="similar to AA sequence:Phytozome:POPTR_0010s25730.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3361t4; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc44t29" mRNA complement(join(10233967..10234374,10234704..10235855, 10236072..10236209,10236388..10236433,10237440..10237540, 10238557..10238694,10238827..10238925,10239428..10239544, 10239666..10239830,10240039..10240098,10241193..10241360, 10242603..10242713,10244668..10244766,10244847..10244912, 10245389..10245526,10246889..10246972,10247079..10247121, 10247249..10247304,10248509..10248617,10248703..10248785, 10248869..10248952,10250294..10250365,10250442..10250519, 10250600..10250683,10250777..10250847,10251060..10251129, 10251886..10251975,10252075..10252206,10252296..10252411, 10255400..10255439,10255522..10255638,10258689..10258969, 10259370..10259788)) /locus_tag="TCM_028049" /product="Autoinhibited Ca(2+)-ATPase 9 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g23760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039616t3" /inference="similar to AA sequence:Phytozome:POPTR_0010s25730.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc44t28; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc44t29" CDS complement(join(10234269..10234374,10234704..10234795, 10235748..10235855,10236072..10236209,10236388..10236433, 10237440..10237540,10238557..10238694,10238827..10238925, 10239428..10239544,10239666..10239830,10240039..10240098, 10241193..10241360,10242603..10242713,10244668..10244766, 10244847..10244912,10245389..10245526,10246889..10246972, 10247079..10247121,10247249..10247304,10248509..10248617, 10248703..10248785,10248869..10248952,10250294..10250365, 10250442..10250519,10250600..10250683,10250777..10250847, 10251060..10251129,10251886..10251975,10252075..10252206, 10252296..10252411,10255400..10255439,10255522..10255638, 10258689..10258862)) /locus_tag="TCM_028049" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG039616t3" /codon_start=1 /product="Autoinhibited Ca(2+)-ATPase 9 isoform 1" /protein_id="EOY26432.1" /db_xref="Phytozome:POPTR_0010s25730.1" /db_xref="TAIR:AT3G21180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU41" /translation="MSSVSSGNGLLHLEDMEAGPSKDNDDLNNHLDPDADPSNPFDIA HTKNAPLETLQRWRQAALVLNASRRFRYTLDLRKEEEKEQRKRMIRAHAQVIRAALLF KLAGEKQIVPGTPVALPVAGGDYAIELEQLASMTRDHKLSALQQYDGVKGLSGLLRTN LELGINEDEADLLKRRNAFGSNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAAVSLGL GIKTEGLEEGWYDGGSIFFAVFLVIVVTATSDYRQSLQFQNLSEEKRNIQIEVMRGGR TVKISIYDVVVGDVVPLKIGDQVPADGILITGHSLAIDESSMTGESKIVHKDQKEPFL MSGCKVADGVGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLA VAVSVLAVLLARYFTGHTEDPNGNREFIKGQTTVEDAFNDVVKIFTIAVTIIVVAVPE GLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNEMTVVEAF VGKKKINPPADSSQLHPSVVSLLSEGVAQNSTGNVFVPKDGGDVEISGSPTEKAILSW AVKLGMKYDVIRSESTVLHVFPFNSEKKRGGVALQLSDSQVHIHWKGAAELVLASCSR YLDSNGCLQSIDEEKDYLKAAIDEMATSSLRCIALAYRLCEKEEIPTDEESFNRWVLP EDNLVLLAIVGIKDPCRPGVKDAVKICMDAGVKVRMVTGDNIQTAKAIALECGILSSA EDATEPTIIEGRVFRALSEKEREQVAKKITVMGRSSPNDKLLLVQALRKGGDVVAVTG DGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVIRWGRSVYANIQK FIQFQLTVNVAALVINVVAAVSSGDVPLNSVQLLWVNLIMDTLGALALATEPPTDNLM HKTPVGRREPLITNIMWRNLLIQALYQVTVLLALNFAGLSILHLKDDGNRAHAFEVKN TVIFNAFVMCQIFNEFNARKPEEINCFKGVTKNYLFMGIVGFTFILQIIIVEFLGKFT STVRLDWELWLVSVGIGLVSWPLAMVGKLISVPKTPLAAYLTKPFERCRGSQNA" CDS complement(join(10234269..10234374,10234704..10234795, 10235748..10235855,10236072..10236209,10236388..10236433, 10237440..10237540,10238557..10238694,10238827..10238925, 10239428..10239544,10239666..10239830,10240039..10240098, 10241193..10241360,10242603..10242713,10244668..10244766, 10244847..10244912,10245389..10245526,10246889..10246972, 10247079..10247121,10247249..10247304,10248509..10248617, 10248703..10248785,10248869..10248952,10250294..10250365, 10250442..10250519,10250600..10250683,10250777..10250847, 10251060..10251129,10251886..10251975,10252075..10252206, 10252296..10252411,10255400..10255439,10255522..10255638, 10258689..10258862)) /locus_tag="TCM_028049" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG039616t3" /codon_start=1 /product="Autoinhibited Ca(2+)-ATPase 9 isoform 1" /protein_id="EOY26433.1" /db_xref="Phytozome:POPTR_0010s25730.1" /db_xref="TAIR:AT3G21180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU41" /translation="MSSVSSGNGLLHLEDMEAGPSKDNDDLNNHLDPDADPSNPFDIA HTKNAPLETLQRWRQAALVLNASRRFRYTLDLRKEEEKEQRKRMIRAHAQVIRAALLF KLAGEKQIVPGTPVALPVAGGDYAIELEQLASMTRDHKLSALQQYDGVKGLSGLLRTN LELGINEDEADLLKRRNAFGSNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAAVSLGL GIKTEGLEEGWYDGGSIFFAVFLVIVVTATSDYRQSLQFQNLSEEKRNIQIEVMRGGR TVKISIYDVVVGDVVPLKIGDQVPADGILITGHSLAIDESSMTGESKIVHKDQKEPFL MSGCKVADGVGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLA VAVSVLAVLLARYFTGHTEDPNGNREFIKGQTTVEDAFNDVVKIFTIAVTIIVVAVPE GLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNEMTVVEAF VGKKKINPPADSSQLHPSVVSLLSEGVAQNSTGNVFVPKDGGDVEISGSPTEKAILSW AVKLGMKYDVIRSESTVLHVFPFNSEKKRGGVALQLSDSQVHIHWKGAAELVLASCSR YLDSNGCLQSIDEEKDYLKAAIDEMATSSLRCIALAYRLCEKEEIPTDEESFNRWVLP EDNLVLLAIVGIKDPCRPGVKDAVKICMDAGVKVRMVTGDNIQTAKAIALECGILSSA EDATEPTIIEGRVFRALSEKEREQVAKKITVMGRSSPNDKLLLVQALRKGGDVVAVTG DGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVIRWGRSVYANIQK FIQFQLTVNVAALVINVVAAVSSGDVPLNSVQLLWVNLIMDTLGALALATEPPTDNLM HKTPVGRREPLITNIMWRNLLIQALYQVTVLLALNFAGLSILHLKDDGNRAHAFEVKN TVIFNAFVMCQIFNEFNARKPEEINCFKGVTKNYLFMGIVGFTFILQIIIVEFLGKFT STVRLDWELWLVSVGIGLVSWPLAMVGKLISVPKTPLAAYLTKPFERCRGSQNA" CDS complement(join(10234269..10234374,10234704..10234795, 10235748..10235855,10236072..10236212,10236388..10236433, 10237440..10237540,10238557..10238694,10238827..10238925, 10239428..10239544,10239666..10239830,10240039..10240098, 10241193..10241360,10242603..10242713,10244668..10244766, 10244847..10244912,10245389..10245526,10246889..10246972, 10247079..10247121,10247249..10247304,10248509..10248617, 10248703..10248785,10248869..10248952,10250294..10250365, 10250442..10250519,10250600..10250683,10250777..10250847, 10251060..10251129,10251886..10251975,10252075..10252206, 10252296..10252411,10255400..10255439,10255522..10255638, 10258689..10258862)) /locus_tag="TCM_028049" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG039616t3" /codon_start=1 /product="Autoinhibited Ca(2+)-ATPase 9 isoform 3" /protein_id="EOY26434.1" /db_xref="Phytozome:POPTR_0010s25730.1" /db_xref="TAIR:AT3G21180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU41" /translation="MSSVSSGNGLLHLEDMEAGPSKDNDDLNNHLDPDADPSNPFDIA HTKNAPLETLQRWRQAALVLNASRRFRYTLDLRKEEEKEQRKRMIRAHAQVIRAALLF KLAGEKQIVPGTPVALPVAGGDYAIELEQLASMTRDHKLSALQQYDGVKGLSGLLRTN LELGINEDEADLLKRRNAFGSNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAAVSLGL GIKTEGLEEGWYDGGSIFFAVFLVIVVTATSDYRQSLQFQNLSEEKRNIQIEVMRGGR TVKISIYDVVVGDVVPLKIGDQVPADGILITGHSLAIDESSMTGESKIVHKDQKEPFL MSGCKVADGVGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLA VAVSVLAVLLARYFTGHTEDPNGNREFIKGQTTVEDAFNDVVKIFTIAVTIIVVAVPE GLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNEMTVVEAF VGKKKINPPADSSQLHPSVVSLLSEGVAQNSTGNVFVPKDGGDVEISGSPTEKAILSW AVKLGMKYDVIRSESTVLHVFPFNSEKKRGGVALQLSDSQVHIHWKGAAELVLASCSR YLDSNGCLQSIDEEKDYLKAAIDEMATSSLRCIALAYRLCEKEEIPTDEESFNRWVLP EDNLVLLAIVGIKDPCRPGVKDAVKICMDAGVKVRMVTGDNIQTAKAIALECGILSSA EDATEPTIIEGRVFRALSEKEREQVAKKITVMGRSSPNDKLLLVQALRKGGDVVAVTG DGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVIRWGRSVYANIQK FIQFQLTVNVAALVINVVAAVSSGDVPLNSVQLLWVNLIMDTLGALALATEPPTDNLM HKTPVGRREPLITNIMWRNLLIQQALYQVTVLLALNFAGLSILHLKDDGNRAHAFEVK NTVIFNAFVMCQIFNEFNARKPEEINCFKGVTKNYLFMGIVGFTFILQIIIVEFLGKF TSTVRLDWELWLVSVGIGLVSWPLAMVGKLISVPKTPLAAYLTKPFERCRGSQNA" CDS complement(join(10235676..10235855,10236072..10236209, 10236388..10236433,10237440..10237540,10238557..10238694, 10238827..10238925,10239428..10239544,10239666..10239830, 10240039..10240098,10241193..10241360,10242603..10242713, 10244668..10244766,10244847..10244912,10245389..10245526, 10246889..10246972,10247079..10247121,10247249..10247304, 10248509..10248617,10248703..10248785,10248869..10248952, 10250294..10250365,10250442..10250519,10250600..10250683, 10250777..10250847,10251060..10251129,10251886..10251975, 10252075..10252206,10252296..10252411,10255400..10255439, 10255522..10255638,10258689..10258862)) /locus_tag="TCM_028049" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG039616t3" /codon_start=1 /product="Autoinhibited Ca(2+)-ATPase 9 isoform 4" /protein_id="EOY26435.1" /db_xref="Phytozome:POPTR_0010s25730.1" /db_xref="TAIR:AT3G21180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU41" /translation="MSSVSSGNGLLHLEDMEAGPSKDNDDLNNHLDPDADPSNPFDIA HTKNAPLETLQRWRQAALVLNASRRFRYTLDLRKEEEKEQRKRMIRAHAQVIRAALLF KLAGEKQIVPGTPVALPVAGGDYAIELEQLASMTRDHKLSALQQYDGVKGLSGLLRTN LELGINEDEADLLKRRNAFGSNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAAVSLGL GIKTEGLEEGWYDGGSIFFAVFLVIVVTATSDYRQSLQFQNLSEEKRNIQIEVMRGGR TVKISIYDVVVGDVVPLKIGDQVPADGILITGHSLAIDESSMTGESKIVHKDQKEPFL MSGCKVADGVGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLA VAVSVLAVLLARYFTGHTEDPNGNREFIKGQTTVEDAFNDVVKIFTIAVTIIVVAVPE GLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNEMTVVEAF VGKKKINPPADSSQLHPSVVSLLSEGVAQNSTGNVFVPKDGGDVEISGSPTEKAILSW AVKLGMKYDVIRSESTVLHVFPFNSEKKRGGVALQLSDSQVHIHWKGAAELVLASCSR YLDSNGCLQSIDEEKDYLKAAIDEMATSSLRCIALAYRLCEKEEIPTDEESFNRWVLP EDNLVLLAIVGIKDPCRPGVKDAVKICMDAGVKVRMVTGDNIQTAKAIALECGILSSA EDATEPTIIEGRVFRALSEKEREQVAKKITVMGRSSPNDKLLLVQALRKGGDVVAVTG DGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVIRWGRSVYANIQK FIQFQLTVNVAALVINVVAAVSSGDVPLNSVQLLWVNLIMDTLGALALATEPPTDNLM HKTPVGRREPLITNIMWRNLLIQALYQVTVLLALNFAGLSILHLKDDGNRAHAFEVKN TVIFNAFVMCQIFNEFNARKPEEINCFKGVTKNYLFMGIVGFTFILQVINLTFFYYYY FCFSWAVMFDLR" mobile_element complement(10263589..10264422) /note="source:CACAO_M_E11925_F316_scaffold_2 7019 7944" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10264647..10265373) /note="source:CACAO_M_E11925_F316_scaffold_2 3518 4217" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10276784..10279782) /note="source:CACAO_M_S_E14196_F7_scaffold_2 1 2984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10281156..10284203 /note="source:INTACT261_F189_scaffold_2-int 8901 11964" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10284366..10284484) /note="source:INTACT135F_F90_scaffold_2-int 1 115" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10284408..10284485) /note="source:CACAO_M_E48538_F49_scaffold_6 600 676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10285562..10286165 /note="source:CACAO_M_E56710_F44_scaffold_8 7721 8294" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10287186..10287351 /note="source:INTACT261_F189_scaffold_2-int 186 372" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10287729..10287808 /note="source:INTACT261_F189_scaffold_2-int 12544 12628" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10288247..10288416) /note="source:CACAO_M_E48538_F49_scaffold_6 12159 12311" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10288578..10288649 /note="source:CACAO_M_E3884_F22_scaffold_1 13213 13279" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10289632..10291621 /note="source:CACAO_M_E3884_F22_scaffold_1 13583 15415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10291624..10294614 /note="source:CACAO_M_E45308_F72_scaffold_6 1 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10294761..10294818 /note="source:CACAO_M_E3884_F22_scaffold_1 15075 15141" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10295184..10295257 /note="source:INTACT261_F189_scaffold_2-int 3459 3529" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10295215..10295281) /note="source:INTACT261_F189_scaffold_2-int 12707 12776" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10295386..10296899) /note="source:CACAO_M_E48538_F49_scaffold_6 4866 6384" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10298015..10298354) /note="source:CACAO_M_E48538_F49_scaffold_6 4574 4871" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10298086..10298342 /note="source:CACAO_M_E3884_F22_scaffold_1 17603 17844" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10301133..10305392 /locus_tag="TCM_028053" /note="dbxref CacaoGD:Thecc1EG028053" mRNA join(10301133..10301677,10302458..10302511, 10302704..10302741,10303184..10303312,10304974..10305392) /locus_tag="TCM_028053" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(10301305..10301677,10302458..10302511, 10302704..10302741,10303184..10303312,10304974..10305336) /locus_tag="TCM_028053" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26436.1" /translation="MMIAMTVGKPLFIEEATTNGSHPIMAHVCVEYYYQKAPLYHVWI VSRDRKTGAMIGGFSQRVEFSKLLDYCIHCLHVGHSISICMVLGNKPENSGVKKPLPL RIIKQSDDLSRVQILSSNEEKLVKEVESSDEFLTALRSEPEFLNSVGDDVALEGLWMV GGDFNSILSSDEWLHGASPHDGSMEDFATALLNCGLIDIISQTTYFLHKTLFVIYLGA PLFKGLIKILLFDSLITKIRDRISRWENKILSPGGRITLLWSVLSSMPIYLLQILKPP MTVIEKIERLFNSFLWVGSIACKKTHWVAWSKISFPCLEEGA" gene 10305439..10307471 /locus_tag="TCM_028054" /note="dbxref CacaoGD:Thecc1EG028054" mRNA join(10305439..10305848,10307400..10307471) /locus_tag="TCM_028054" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016753t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(10305587..10305848,10307400..10307440) /locus_tag="TCM_028054" /note="paralog of Thecc1EG016753t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26437.1" /translation="MGEKPLVTSFLSFQNDMSIVNSFYSGDAWDMDKLKLLLLATLIN DVLKIPFDSSKEDVAYWTLTSHGDFSTRSAWEVVRQWQPTITMEFKTIFNNFFFTF" mobile_element complement(10307209..10307318) /note="source:CACAO_M_E48538_F49_scaffold_6 12210 12311" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10307593..10310068 /locus_tag="TCM_028055" /note="dbxref CacaoGD:Thecc1EG028055" mRNA join(10307593..10307753,10308302..10308480, 10308571..10308668,10308751..10308808,10309277..10309356, 10309462..10309564,10309644..10310068) /locus_tag="TCM_028055" /product="Ribosomal protein L30/L7 family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029655001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040993t2" /inference="similar to AA sequence:Phytozome:Glyma08g23750.2" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11074t00001" CDS join(10308304..10308480,10308571..10308668, 10308751..10308808,10309277..10309356,10309462..10309564, 10309644..10309859) /locus_tag="TCM_028055" /note="paralog of Thecc1EG040993t2" /codon_start=1 /product="Ribosomal protein L30/L7 family protein" /protein_id="EOY26438.1" /db_xref="Phytozome:Glyma08g23750.2" /db_xref="TAIR:AT3G13580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6YYR2" /translation="MGGEVKAVIPESLLKKQKRNEEWELAKKQELEAAKKKKAEDRKV IYNRAKQYAKEYETQEKELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAMHPRTRK ILQLLRLRQIFNGVFLKVNKATMNMLHLVEPYVTYGYPNHKSVRELIYKRGYGKLNKQ RTALTDNSVVEQALGQYGIICVEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKK RNHYVEGGDAGNRENYINELIRRMN" gene complement(10310338..10311781) /locus_tag="TCM_028057" /note="dbxref CacaoGD:Thecc1EG028057" mRNA complement(join(10310338..10310680,10310810..10311127, 10311226..10311550,10311650..10311781)) /locus_tag="TCM_028057" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.97 coverage" CDS complement(join(10310472..10310680,10310810..10311127, 10311226..10311550,10311650..10311733)) /locus_tag="TCM_028057" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26439.1" /translation="MTILSFKNKPNRRKKFFFKKKSFFRSNMPCGAQPRPFLVASVAK PALPGQGWISLTRKLMRKRILECWSAQSAEPRSLGLQSPHSGRPRIEPLLEEHSLSQP LIWLHTTLGCLVWPARSLSMQPARIRTLTRNKEATLADTHSSPHNGPQVPSPQPLGCP AQPTLTAPSHQLLAHNAHSQPSFSQPTIQPLARSPKVPFIVGSLPQQSQGVPNGPGAV WSRSVHSDVPLGGWATASPPIGLVGVPVPTRHALRANAACPTAWASCGPKLPVPAICA PKHGLMAGDQPHLRAMPPPIEPAWLGKQKGRDACL" mobile_element 10312553..10312763 /note="source:INTACT135F_F90_scaffold_2-int 12954 13166" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10313866..10314046) /note="source:INTACT567_F258_scaffold_9-int 9893 10061" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10317181..10317865 /note="source:CACAO_M_S_E99244_F4_scaffold_9 9270 9979" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10318024..10319653 /note="source:CACAO_M_E24592_F195_scaffold_4 2337 3873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10320095..10322212) /note="source:CACAO_M_E85348_F277_scaffold_11 863 3007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10322209..10324734) /note="source:CACAO_Again_on_E60_scaffold_2 775 3297" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(10325103..10325972) /note="source:CACAO_M_E57916_F277_scaffold_9 1 872" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10331899..10331980 /note="source:CACAO_M_S_E99244_F4_scaffold_9 3759 3839" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10331918..10333596) /note="source:CACAO_M_E5326_F22_scaffold_2 21174 22974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10337403..10337414) /note="source:CACAO_M_E1841_F5_scaffold_1 3163 3198" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10337415..10337482) /note="source:scaffold_3_CACTA_0382 6363 6429" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10337483..10337500) /note="source:CACAO_M_E1841_F5_scaffold_1 3099 3162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10341052..10341495 /note="source:INTACT597_F267_scaffold_2-int 9676 10115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10341711..10341861 /note="source:INTACT597_F267_scaffold_2-int 10399 10547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10341991..10342710 /note="source:CACAO_M_E1841_F5_scaffold_1 25802 26505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10342685..10342986) /note="source:CACAO_M_S_E5046_F335_scaffold_1 17835 18135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10343647..10343733) /note="source:CACAO_M_E24592_F195_scaffold_4 10914 11004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10343658..10344477 /note="source:CACAO_M_E5326_F22_scaffold_2 19817 20638" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10345856..10346781 /note="source:INTACT597_F267_scaffold_2-int 8073 8664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10347098..10347180 /note="source:CACAO_M_E5326_F22_scaffold_2 24538 24614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10347825..10348914) /note="source:INTACT1373F_F385_scaffold_8-int 1 1133" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10348862..10348920) /note="source:CACAO_M_E36038_F90_scaffold_5 12864 12925" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10348863..10348929 /note="source:INTACT30F_F12_scaffold_1-int 1019 1087" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10348913..10349129) /note="source:CACAO_M_S_E5046_F335_scaffold_1 15649 15930" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10349129..10349901 /note="source:CACAO_M_S_E5046_F335_scaffold_1 4140 4912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10350002..10352138 /note="source:CACAO_M_E56815_F15_scaffold_8 816 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10352139..10352486) /note="source:CACAO_M_S_E5046_F335_scaffold_1 15308 15653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10352441..10352601 /note="source:INTACT224_F176_scaffold_8-int 14330 14464" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10354559..10355020 /note="source:INTACT280_F60_scaffold_5-int 9660 10115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10355203..10357793) /note="source:CACAO_M_S_E99244_F4_scaffold_9 9271 11876" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10356872..10359948) /note="source:INTACT595_F266_scaffold_7-int 5560 8657" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10359948..10361774) /note="source:CACAO_M_E5800_F12_scaffold_2 5228 7007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10360217..10362886 /note="source:CACAO_M_E57728_F42_scaffold_9 429 3112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10362887..10366644 /note="source:INTACT41F_F338_scaffold_1-int 4582 8344" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10367444..10368106) /note="source:CACAO_M_S_E145698_F277_scaffold_11 14705 15333" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10370648..10372512) /note="source:CACAO_M_S_E99244_F4_scaffold_9 9270 11115" /mobile_element_type="retrotransposon:LTR/Copia" gene 10373753..10383757 /locus_tag="TCM_028061" /note="dbxref CacaoGD:Thecc1EG028061" mRNA join(10373753..10374006,10377438..10378358, 10383627..10383757) /locus_tag="TCM_028061" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400066869.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009243t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS join(10373930..10374006,10377438..10378358, 10383627..10383657) /locus_tag="TCM_028061" /note="paralog of Thecc1EG009243t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLE9" /translation="MASSARNVRGYKGKGVTSSSRGKSVQRGRVTRPVGLDTPVSRQE EEQSSGDVDRHPARGITIEDLAAGLQGVNRVVEMMATRMEDIQRVVEGRPTVQESPSS QGQADHQHHEEERGHLDISLPDFLKLKPPTFTGSDASEKPQVFLDKMEKICKALGCSS VRSVELAAFQLEDVAQEWYSSLCRGRPTNATPLAWSEFSVAFLDRFLPLSVRNARARE FETLVQTSSMTVSEYDIKFTQLARYAPYLVSTEEMKIQRFVDGLVEPLFRAVASRDFT TYSAAVDRAQRIEMRTNESRAARDRAKRGKTEGYQGRRDFSSGGSSSSRQGPQRDSRR TFVFDLWA" mobile_element complement(10374202..10374595) /note="source:CACAO_M_S_E15347_F33_scaffold_2 8138 8527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10377431..10378391 /note="source:CACAO_M_S_E18399_F231_scaffold_3 3046 4005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10383021..10383429) /note="source:CACAO_M_S_E15347_F33_scaffold_2 5809 6217" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10388050..10388723) /locus_tag="TCM_028062" /note="dbxref CacaoGD:Thecc1EG028062" mRNA complement(10388050..10388723) /locus_tag="TCM_028062" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.86 coverage" CDS complement(10388309..10388527) /locus_tag="TCM_028062" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26441.1" /translation="MSFGKKEKLSPKYNGLFEILEKVNTITYQLALSSDLASVHIGFH ILILQKYQPNPFHVIQHESLQLEDCLSF" mobile_element complement(10390637..10390777) /note="source:scaffold_3_CACTA_0384 10195 10335" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10390770..10391051 /note="source:CACAO_M_E49655_F82_scaffold_7 92 364" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10390884..10391778) /note="source:INTACT701_F305_scaffold_10-int 12687 13589" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10391775..10392268 /note="source:CACAO_M_E11054_F12_scaffold_2 8347 8769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10392393..10392723 /note="source:INTACT93F_F345_scaffold_2-int 16823 17146" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10392475..10393408) /note="source:CACAO_M_E24592_F195_scaffold_4 1458 2171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10393406..10396401 /note="source:scaffold_2_CACTA_0275 3933 6915" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10398833..10399217 /note="source:INTACT212_F171_scaffold_10-int 6900 7284" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10399208..10408304) /note="source:CACAO_M_S_E119127_F246_scaffold_9 1 9158" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10408305..10408778 /note="source:scaffold_3_CACTA_0384 8515 8958" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10408910..10410243 /note="source:scaffold_3_CACTA_0384 8992 10334" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10410553..10411487 /note="source:CACAO_M_E24592_F195_scaffold_4 1459 2361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10410726..10413078 /note="source:scaffold_3_CACTA_0384 7991 10331" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10416175..10418878 /note="source:CACAO_M_E11774_F345_scaffold_2 1 2669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10419304..10421241) /note="source:INTACT8_F106_scaffold_3-int 1 1369" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(10421043..10422258) /locus_tag="TCM_028065" /note="dbxref CacaoGD:Thecc1EG028065" mRNA complement(10421043..10422258) /locus_tag="TCM_028065" /product="Uncharacterized protein" /note="quality class is strong-expresste, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage" CDS complement(10421513..10421965) /locus_tag="TCM_028065" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26442.1" /translation="MGKKINNKFFGVIVGKLFFKILLLLIPSKFSLNSNFIFLVFKNL WSLSVEKKLESYSFLIQRYKELLENFERKICKFKLYIRQWLKIIIIMVTMLSLKFLKK TKPLEIMLFLSYKACTKASKDLLSMQIILKSSLFTFKCFSLQFSLVGY" mobile_element 10421833..10422327 /note="source:INTACT222_F33_scaffold_7-int 4248 4720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10422438..10424938) /note="source:CACAO_M_S_E88744_F144_scaffold_7 1 2580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10426935..10428078 /note="source:INTACT453_F4_scaffold_9-int 16946 18089" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10428078..10430561) /note="source:scaffold_3_CACTA_0384 7991 10334" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10429693..10430566) /note="source:CACAO_M_E24592_F195_scaffold_4 1459 2361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10430486..10430579 /note="source:CACAO_M_E70891_F369_scaffold_10 12328 12424" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10430567..10431290 /note="source:CACAO_M_E5627_F4_scaffold_2 1139 1858" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10431337..10431413 /note="source:CACAO_M_E50311_F328_scaffold_7 5008 5087" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10434887..10444805 /note="source:INTACT363_F7_scaffold_9-int 1 9920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10445548..10446174) /note="source:INTACT103_F9_scaffold_4-int 19280 19892" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10449105..10452063) /note="source:CACAO_M_E10603_F306_scaffold_2 4817 7769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10452794..10452908 /note="source:CACAO_M_E48538_F49_scaffold_6 12130 12254" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10456759..10460134 /note="source:CACAO_M_E48452_F5_scaffold_6 7177 10542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10461591..10462672) /note="source:INTACT191F_F350_scaffold_3-int 1633 2709" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10461714..10462849 /note="source:CACAO_M_E42395_F3_scaffold_5 15055 16156" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10462973..10467196) /note="source:INTACT104_F144_scaffold_1-int 4930 9153" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10467197..10477508 /note="source:CACAO_M_E45364_F328_scaffold_6 1 10312" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10477509..10482296) /note="source:INTACT104_F144_scaffold_1-int 2068 10368" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10489618..10491075) /note="source:CACAO_M_S_E4377_F7_scaffold_1 1523 2979" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10491076..10493070 /note="source:CACAO_M_S_E84881_F231_scaffold_7 1 2000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10493069..10493253 /note="source:CACAO_M_E42809_F5_scaffold_5 10660 10845" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10493252..10494779) /note="source:CACAO_M_E635_F246_scaffold_1 1 1549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10494937..10495649 /note="source:INTACT597_F267_scaffold_2-int 13004 13713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10496067..10498078 /note="source:scaffold_2_CACTA_0262 6542 8564" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10498005..10498088 /note="source:CACAO_M_S_E14932_F233_scaffold_2 2690 2774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10498070..10498421) /note="source:INTACT409F_F47_scaffold_4-int 16257 16583" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10498703..10499229) /note="source:INTACT409F_F47_scaffold_4-int 15745 16274" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10499013..10499602) /note="source:CACAO_M_E22484_F328_scaffold_3 18740 19310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10499074..10499982 /note="source:scaffold_2_CACTA_0262 8401 9310" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10499983..10501024) /note="source:CACAO_M_S_E53154_F78_scaffold_5 1779 2841" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10501316..10506187) /note="source:INTACT715_F7_scaffold_5-int 5055 9920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10506187..10509143 /note="source:CACAO_M_S_E64440_F7_scaffold_5 3971 6914" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10509143..10512266 /note="source:CACAO_M_S_E109876_F7_scaffold_9 4861 7984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10511193..10512947) /note="source:CACAO_M_S_E7818_F60_scaffold_2 16467 18212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10512954..10514540) /note="source:CACAO_M_E84189_F277_scaffold_10 1 1588" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10514541..10516473 /note="source:INTACT597_F267_scaffold_2-int 9645 11627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10516448..10516791 /note="source:scaffold_2_CACTA_0262 14576 14923" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10516783..10518071 /note="source:INTACT597_F267_scaffold_2-int 12420 13713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10518023..10518457) /note="source:CACAO_M_S_E84881_F231_scaffold_7 1202 1640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10518496..10518949 /note="source:scaffold_2_CACTA_0262 6542 6997" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10519017..10519404 /note="source:INTACT65_F13_scaffold_1-int 8251 8643" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10519362..10519586) /note="source:INTACT180_F13_scaffold_3-int 3166 3390" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10519776..10520185) /note="source:INTACT409F_F47_scaffold_4-int 16257 16736" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10520466..10520991) /note="source:INTACT409F_F47_scaffold_4-int 15745 16274" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10522015..10522120 /note="source:scaffold_2_CACTA_0262 5400 5499" /mobile_element_type="transposon:TIR/CACTA" gene complement(10527338..10537904) /locus_tag="TCM_028072" /note="dbxref CacaoGD:Thecc1EG028072" mRNA complement(join(10527338..10527730,10527821..10528075, 10528221..10528392,10528491..10528718,10528806..10528936, 10529081..10529164,10529280..10529570,10529974..10530306, 10530398..10530561,10530675..10530782,10530868..10531024, 10531127..10531233,10531329..10531489,10531598..10531914, 10532005..10532286,10532362..10532663,10532762..10532852, 10532962..10533015,10533204..10533280,10533598..10533757, 10535049..10535133,10536319..10536390,10536478..10536566, 10536672..10536792,10537047..10537904)) /locus_tag="TCM_028072" /product="Pleiotropic drug resistance 12" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017202001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028498t1" /inference="similar to AA sequence:ricco:30131.m006867" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1139t3" CDS complement(join(10527473..10527730,10527821..10528075, 10528221..10528392,10528491..10528718,10528806..10528936, 10529081..10529164,10529280..10529570,10529974..10530306, 10530398..10530561,10530675..10530782,10530868..10531024, 10531127..10531233,10531329..10531489,10531598..10531914, 10532005..10532286,10532362..10532663,10532762..10532852, 10532962..10533015,10533204..10533280,10533598..10533757, 10535049..10535133,10536319..10536390,10536478..10536566, 10536672..10536792,10537047..10537381)) /locus_tag="TCM_028072" /note="dbxref ricco:30131.m006867; paralog of Thecc1EG028498t1" /codon_start=1 /product="Pleiotropic drug resistance 12" /protein_id="EOY26443.1" /db_xref="TAIR:AT1G15520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HX55" /translation="MKSGEAGDLHELDQSSLRRDSPSVASSRNASEVFSMSLQDDEEA LKWAALERLPTYERLKKGLLQRSRGQTSEIEVKNLTFHERVKTVERLFKSTEEDNESF LLQLRNRIDRVGIELPRIEVRFEQLNVCAEAYVGSRALPSFFNFYTNMVESFLSYLRL LPSRKKQISILEGVTGILKPCSPVIRPFNVDRLKNYITYPITFSGIMTLLLGPPSSGK TTLLLALAGMLNQDLRFSGRVTYNGHDLREFVPQKSAAYISQHDLHIPEMTVRETLAF SARCQGAGSQYDMLVELLRREKAANIKPDPDVDIFMKAAATEGQEMNIVVDYVLKILG LEVCADTLVGDGMLRGISGGQKKRLTTGEMLVGPAKVLLMDEISTGLDSSTTFQVVNA LKNYVHVLDGTALISLLQPQPETYDLFDDIILLSDGQIVYQGPREHVLEFFESMGFRC PERKGVADFLQEVTSKKDQGQYWARENEPYRYVTIKEFVQAFKSFHVSLKLKTEISAP FDRSKSHRAALTTQKYGVGKKELFNACMSRELLLTKRNSFVIIFKLIQLLVTAFVTMT VFLRTEMHRDSQSDGGIFMGSLFFILYVSMFNGFSETSMTIAKLPVFYKQRAFLLYPP WAYALPSWSIRLPISLIEVAVFVFPIYYVIGYDPNVGRFFRQYLLLLLIKVMASVFFR FLGAVCRTPILGNTFAALGLIIYIVLGGFVLSKESVKKWWIWVYWSSPMMYAQNALAV NEFLGESWRHPVYPNSTETLGIVVLKTRGMFLDSYWYWIGVGSTIGFTLVFCCLFTVA LTYLNPIEKSEAFISEETFQSKQDDNNDKKTQLSCQGAESAGNDEIRRVSSTITSTEN FETNAGVPQRRRRRGMVLPFEQFWITFDAIRYFVDMPQEMKNQGVNEDRLELLKGVSG TFRPSILTALMGVSGAGKTTLMDVLAGRKTDGYIQGSITISGYQKKQETFTRIFGYCE QNDIHSPHVTIYESLIYSAWLRLPPEVDSGTRKMFIEEVMELMESSPLRDAMVGLPGV NGLSLEQRKRLTVAVELMANPSIIFMDEPTSGLDARAAAIVMRTIRNTVDTGRTVVCT IHQPSIEIFEAFDELFLMARGGQEIYAGPLGHHSFHLIKYFEEIEGISKIKDGYNPAT WVLEVTTSAQSDLGIDLNDVYRKSELYRRNKALIKELSIPAPGTKELYFPTKYSQSFL TQWKACLWKQNCSYWRNTAYTAFRLLFTAFLALVYGSMFWDLGSKRKRRQDLFNAMGA MYTSVYFIGVINSFLVIPVVGIERTVFYRERAAGMYSSLAYSLAQVVIELPYLFILAI AYGVIIYAMIGFEWNATKFFWYMFFMFFNLLDNTIFAMMLVALTPNQQVAYIVSTAIY SLWNLFAGFIIPRPRIPVWWRWYSWTSPLAWTLYGLIASQFGDVKDMLDTNETVQSFI RSHYGFRHDFIGVVAAAIVAFAVFFALIFSVSIKVMNFQRR" mobile_element 10543926..10544469 /note="source:CACAO_M_S_E1495_F60_scaffold_1 11240 11733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10544984..10545953 /note="source:CACAO_M_S_E119191_F3_scaffold_9 9262 10266" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10546016..10547487 /note="source:CACAO_M_S_E119191_F3_scaffold_9 222 1689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10547732..10548172 /note="source:CACAO_M_S_E119191_F3_scaffold_9 1250 1689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10548411..10548801 /note="source:CACAO_M_E36498_F9_scaffold_5 6441 6831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10548769..10550307 /note="source:INTACT135_F42_scaffold_4-int 10117 11661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10550247..10550432 /note="source:scaffold_4_CACTA_0493 6566 6763" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10550321..10550515) /note="source:INTACT135_F42_scaffold_4-int 6142 6336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10550756..10550827) /note="source:CACAO_M_E9340_F15_scaffold_2 244 315" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10551207..10552618 /note="source:CACAO_M_S_E64023_F13_scaffold_5 18238 19648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10552615..10555037 /note="source:CACAO_M_E36498_F9_scaffold_5 370 2837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10554010..10560513 /note="source:scaffold_6_CACTA_0707 1 6504" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10561165..10563849) /note="source:CACAO_M_E52239_F256_scaffold_7 19808 22446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10565517..10565798 /note="source:scaffold_8_CACTA_0859 17079 17351" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10566576..10567574 /note="source:CACAO_M_E84368_F4_scaffold_10 8251 9248" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10568882..10569103 /note="source:scaffold_5_CACTA_0591 9534 9756" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10569166..10569899 /note="source:CACAO_M_S_E119191_F3_scaffold_9 222 994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10573294..10575658 /note="source:CACAO_M_S_E119191_F3_scaffold_9 986 3418" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10575869..10577361) /note="source:scaffold_4_CACTA_0493 3757 5254" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10577367..10578107) /note="source:scaffold_4_CACTA_0493 2815 3585" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10578094..10578427 /note="source:CACAO_M_S_E119191_F3_scaffold_9 3786 4121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10586456..10587342) /note="source:CACAO_M_E58324_F9_scaffold_9 9333 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10592203..10593818 /note="source:CACAO_M_S_E119191_F3_scaffold_9 4114 5720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10593956..10596921 /note="source:CACAO_M_E45393_F15_scaffold_6 1 2943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10597007..10598435 /note="source:CACAO_M_S_E64023_F13_scaffold_5 3038 4463" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10600810..10602044 /note="source:CACAO_M_E5627_F4_scaffold_2 5147 6364" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10601945..10602059 /note="source:scaffold_5_CACTA_0591 15349 15466" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10602809..10604611) /note="source:CACAO_M_S_E15173_F4_scaffold_2 61 1865" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10607056..10609977) /note="source:CACAO_M_E42395_F3_scaffold_5 1 2983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10612602..10615525 /note="source:CACAO_M_E45399_F86_scaffold_6 1 2924" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10617312..10617915 /note="source:INTACT293_F14_scaffold_5-int 8679 9336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10617860..10619479) /note="source:INTACT280_F60_scaffold_5-int 8693 9685" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10621053..10621118 /note="source:CACAO_M_S_E15173_F4_scaffold_2 1800 1865" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10621702..10622217) /note="source:CACAO_M_E3891_F15_scaffold_1 2581 3107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10622318..10624891 /note="source:CACAO_M_E11741_F15_scaffold_2 535 3109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10626735..10626816) /note="source:CACAO_M_E65050_F7_scaffold_9 15387 15466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10630411..10633401 /note="source:CACAO_M_S_E123918_F7_scaffold_10 1 2984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10639982..10641386) /note="source:INTACT1440F_F102_scaffold_9-int 6793 8217" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10643420..10646690) /note="source:INTACT1440F_F102_scaffold_9-int 2655 8145" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10649774..10650844) /note="source:CACAO_M_S_E15173_F4_scaffold_2 823 1864" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10650801..10650867) /note="source:CACAO_M_S_E119191_F3_scaffold_9 10674 10742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10650870..10657733 /note="source:INTACT293_F14_scaffold_5-int 1 6846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10657728..10659475 /note="source:CACAO_M_S_E83372_F14_scaffold_6 19671 21418" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10659476..10662449 /note="source:CACAO_M_E34029_F245_scaffold_4 1 2987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10662450..10667123) /note="source:INTACT546_F245_scaffold_7-int 2031 6658" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10669794..10670766 /note="source:CACAO_M_S_E31635_F14_scaffold_3 17224 18224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10670936..10671149) /note="source:INTACT904F_F49_scaffold_6-int 14337 14552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10671149..10671542) /note="source:INTACT904F_F49_scaffold_6-int 13841 14234" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10673382..10675547) /locus_tag="TCM_028079" /note="dbxref CacaoGD:Thecc1EG028079" mRNA complement(join(10673382..10673717,10673799..10673948, 10674044..10674202,10674604..10674859,10674962..10675547)) /locus_tag="TCM_028079" /product="Polyketide cyclase/dehydrase and lipid transport superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30063.m001420" /inference="similar to AA sequence:Phytozome:Glyma07g40120.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g14047t00001" CDS complement(join(10673613..10673717,10673799..10673948, 10674044..10674202,10674604..10674859,10674962..10674996)) /locus_tag="TCM_028079" /codon_start=1 /product="Polyketide cyclase/dehydrase and lipid transport superfamily protein" /protein_id="EOY26444.1" /db_xref="Phytozome:Glyma07g40120.1" /db_xref="TAIR:AT5G49800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5HZ48" /translation="MNSSPAACSQSWSISEDSLRRYVQFASESCIQELLSASDSNKLG NANDGWKILTLDNGVEISKRRSGSLHIFRSRWLLRSVSPQQFITVATAIDAAKQWDPD LVEARYIKDLEDNLSIIRLSFGEKSKPLFRKREFIVYERRETMEDGTLVVAVASLPKE IAAGLHPKQNDAIRGLLLQSGWVVEQLEDINSCIVTYVVQLDPAGWLPKCFVNRLNTK LVMIIENLRKLVQSSN" mobile_element 10676918..10678625 /note="source:CACAO_M_S_E64889_F3_scaffold_5 1 1696" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10678563..10682558) /locus_tag="TCM_028081" /note="dbxref CacaoGD:Thecc1EG028081" mRNA complement(join(10678563..10679731,10682549..10682558)) /locus_tag="TCM_028081" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.39 coverage" CDS complement(10678951..10679151) /locus_tag="TCM_028081" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26445.1" /translation="MRMNLLEITEQIKEKTNLSQIERIPLDHPIARLKIQSILQSGQR RSMKLSMISSRFVSCKSNISTL" mobile_element 10680046..10682583 /note="source:CACAO_M_E13604_F90_scaffold_3 8572 11159" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10687094..10687677) /note="source:CACAO_M_E84368_F4_scaffold_10 5556 6138" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10687661..10688254) /note="source:CACAO_M_S_E7818_F60_scaffold_2 20520 20971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10688372..10689061 /note="source:INTACT187_F9_scaffold_2-int 640 1330" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10688854..10715618 /locus_tag="TCM_028083" /note="dbxref CacaoGD:Thecc1EG028083" mRNA join(10688854..10688881,10710330..10710346, 10711648..10711792,10712332..10712641,10715349..10715618) /locus_tag="TCM_028083" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026879t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element complement(10689062..10689818) /note="source:CACAO_M_E13604_F90_scaffold_3 10414 11159" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10689815..10690124 /note="source:INTACT82F_F344_scaffold_2-int 7682 7990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10690124..10691758 /note="source:CACAO_M_E52239_F256_scaffold_7 4722 6439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10691758..10691963 /note="source:CACAO_M_E43348_F5_scaffold_5 18813 20391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10691964..10693693) /note="source:CACAO_M_E13604_F90_scaffold_3 8601 10374" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10693694..10693725 /note="source:CACAO_M_E43348_F5_scaffold_5 20392 20652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10693794..10696440) /note="source:CACAO_M_E84368_F4_scaffold_10 9971 12633" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10696431..10696888) /note="source:CACAO_M_E84368_F4_scaffold_10 9135 9591" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10696890..10700016) /note="source:CACAO_M_E58223_F201_scaffold_9 1 3045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10700017..10701063) /note="source:CACAO_M_E84368_F4_scaffold_10 8049 9125" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10701059..10705077) /note="source:CACAO_M_E42395_F3_scaffold_5 5734 9697" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10703366..10705776) /note="source:scaffold_5_CACTA_0591 4836 7197" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10704275..10705991 /note="source:INTACT41F_F338_scaffold_1-int 758 2439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10705859..10706007) /note="source:CACAO_M_E42395_F3_scaffold_5 4520 4669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10705991..10708300) /note="source:CACAO_M_E84368_F4_scaffold_10 5712 8022" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10708301..10710920 /note="source:CACAO_M_E45422_F231_scaffold_6 1 2620" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(10710344..10710346,10711648..10711792, 10712332..10712641,10715349..10715454) /locus_tag="TCM_028083" /note="paralog of Thecc1EG026879t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26446.1" /translation="MDIETVLHGDDQLRVASGPEGQNGSMGTREKELTFPAEEDGTSR QKSIVELCSSDKMKDYAENPPNLESALGKCMHNKELSDVSSFPSFSRTKFTEIEVHPR VRHRRQSDTETSIDKIFSLASDKTVDMWDNDKASDEDAISVNFAASWERERFLTHSRE WFISLIHDLSSGPTLLRWVVDKVLLTV" mobile_element complement(10710921..10711632) /note="source:CACAO_M_E84368_F4_scaffold_10 12072 12787" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10712903..10713419) /note="source:CACAO_M_E84368_F4_scaffold_10 4507 5012" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10715573..10716185) /note="source:CACAO_M_E84368_F4_scaffold_10 1243 1856" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10716168..10716262) /note="source:scaffold_2_CACTA_0262 14482 14575" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10716186..10718908 /note="source:INTACT93F_F345_scaffold_2-int 17685 20308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10717069..10718911) /note="source:CACAO_M_E52239_F256_scaffold_7 19810 21618" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10718906..10722749) /note="source:CACAO_M_S_E7105_F60_scaffold_2 4052 10618" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10722752..10725780) /note="source:CACAO_M_S_E6027_F12_scaffold_2 16358 19378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10727713..10729321 /note="source:CACAO_M_E44596_F12_scaffold_6 3011 4626" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10729328..10729496) /note="source:CACAO_M_E24389_F60_scaffold_4 2080 2248" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10729497..10739643 /note="source:CACAO_M_E45426_F42_scaffold_6 1 10147" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10739644..10741740) /note="source:CACAO_M_S_E7105_F60_scaffold_2 2 2103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10744790..10746246) /note="source:CACAO_M_S_E4413_F3_scaffold_1 17089 18559" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10746304..10746526) /note="source:CACAO_M_S_E4413_F3_scaffold_1 16873 17094" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10747817..10748511) /note="source:scaffold_2_CACTA_0260 3825 4514" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10753620..10754225) /note="source:scaffold_2_CACTA_0260 3899 4504" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10755151..10757959 /note="source:CACAO_M_S_E68067_F233_scaffold_6 1 2809" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10759354..10766705 /note="source:CACAO_M_E24729_F87_scaffold_4 1 7330" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10766254..10769620) /locus_tag="TCM_028091" /note="dbxref CacaoGD:Thecc1EG028091" mRNA complement(join(10766254..10766311,10768662..10769367, 10769457..10769620)) /locus_tag="TCM_028091" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024576t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040846" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(10768785..10769367,10769457..10769500)) /locus_tag="TCM_028091" /note="paralog of Thecc1EG024576t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26447.1" /db_xref="Phytozome:PGSC0003DMP400040846" /translation="MIWLFGTHDVSCTIRLERQDLWAFLRNIVPGIHESWLAGGAFNI IINKVERFLGAKSHIGSMEDLALTLFDCGLLDAGFEGNRFTWTNSGMFQRLDRVVCNM QWGMHFTSIRVQHFYRDGSDHCPLLIFSIESSVKRSSSFRFLHAWLKHHDFMSFVDRN WNEPIHGTELMIFWLKQERLKKALKVWNKAIFGDIFSNVKAVEQHAME" mobile_element 10769525..10770505 /note="source:INTACT19F_F94_scaffold_1-int 1 911" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10769713..10780918 /locus_tag="TCM_028092" /note="dbxref CacaoGD:Thecc1EG028092" mRNA join(10769713..10769860,10775495..10775698, 10775810..10775946,10776032..10776131,10777490..10777578, 10780864..10780918) /locus_tag="TCM_028092" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" mobile_element complement(10771331..10771385) /note="source:CACAO_M_S_E101805_F5_scaffold_9 17731 17791" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10771386..10774375 /note="source:CACAO_M_S_E16105_F7_scaffold_2 1 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10774584..10776799) /locus_tag="TCM_028093" /note="dbxref CacaoGD:Thecc1EG028093" mRNA complement(join(10774584..10774985,10775135..10775340, 10776295..10776799)) /locus_tag="TCM_028093" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(10774804..10774985,10775135..10775340, 10776295..10776722)) /locus_tag="TCM_028093" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26449.1" /translation="MATGRPPYPLILSQHADSFSPMPQGTTDNPIIAKDLQPPDNDDL KKGDSQNQLLFSPHAQKKSFFSVAIGDKPLIIPANREPFCFRDRPAVFFFYDEIVALA QPFKYSMVGKFTQMPKMQDIRYAFKAIGLVGAYEIRWLAYKRFENNLYTWLGGQEING QQGGKIKDRFATLKAVENDSVPLLSVPVSNHAWIEDSNAIGCSTSVSVENIVPKAITS HAAGPSEDMVKGSDENIPTMHGQETCDFNPSHATYGSSEGYSDWLPQNEDLEH" CDS join(10775605..10775698,10775810..10775946, 10776032..10776131,10777490..10777578) /locus_tag="TCM_028092" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26448.1" /translation="MVIWANFHTLRILYLARTRLLITCHFVLYFGDYSFFSGQCPITR QVDSLYPTWQQWVQYSDNLKNSTFCMKPPVTSPDRFHLPWLHPPSKIVPLFWQSQGVS TSHKDALKGLIAFDRSIVEALEVTAIILGEPKATSHL" mobile_element complement(10776802..10776868) /note="source:INTACT405F_F91_scaffold_4-int 18773 18839" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10777059..10777154) /note="source:CACAO_M_E33787_F13_scaffold_4 19500 19609" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10777723..10777930) /note="source:scaffold_4_CACTA_0494 390 597" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10777949..10778248) /note="source:CACAO_M_E1841_F5_scaffold_1 25505 25805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10779011..10779924) /note="source:CACAO_M_E1841_F5_scaffold_1 9627 10548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10779920..10780252) /note="source:scaffold_4_CACTA_0494 1 336" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10780715..10780842) /note="source:CACAO_M_E1841_F5_scaffold_1 5342 5468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10780843..10782547) /note="source:INTACT280_F60_scaffold_5-int 1 1733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10784131..10784978) /note="source:CACAO_M_E58324_F9_scaffold_9 7669 8541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10785294..10786599) /note="source:CACAO_M_E1841_F5_scaffold_1 13932 15169" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10786853..10786868) /note="source:CACAO_M_E86361_F7_scaffold_15 7504 7543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10786862..10786919 /note="source:CACAO_M_E22186_F143_scaffold_3 9952 10008" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10786869..10786929) /note="source:scaffold_4_CACTA_0497 1190 1251" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10786901..10787090 /note="source:CACAO_M_S_E5046_F335_scaffold_1 1199 1390" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10786925..10787122) /note="source:CACAO_M_E58324_F9_scaffold_9 8853 9049" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10788305..10788389) /note="source:CACAO_M_E86305_F7_scaffold_15 6215 6299" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10791803..10793205) /note="source:CACAO_M_S_E119191_F3_scaffold_9 222 1689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10793437..10793487) /note="source:CACAO_M_E36294_F51_scaffold_5 6366 6420" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10793488..10796464 /note="source:CACAO_M_S_E98439_F7_scaffold_8 1 2964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10796447..10799437 /note="source:INTACT1332F_F13_scaffold_8-int 2722 6300" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10796465..10796984) /note="source:CACAO_M_S_E64023_F13_scaffold_5 5249 5257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10799446..10800232) /note="source:CACAO_M_S_E119191_F3_scaffold_9 9266 10049" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10800225..10800302) /note="source:CACAO_M_S_E119191_F3_scaffold_9 6082 6159" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10801949..10805045) /note="source:INTACT584_F15_scaffold_3-int 8180 11289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10811499..10817671) /note="source:CACAO_M_E1021_F7_scaffold_1 4137 10288" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10817668..10819946 /note="source:CACAO_M_E86305_F7_scaffold_15 9756 12030" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10819945..10822322 /note="source:CACAO_M_E36294_F51_scaffold_5 8402 10777" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10822323..10825473) /note="source:INTACT1327F_F381_scaffold_8-int 6064 9257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10826132..10827409) /note="source:CACAO_M_S_E119191_F3_scaffold_9 4805 6085" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10827409..10828058 /note="source:CACAO_M_E1841_F5_scaffold_1 3100 3751" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10828063..10828480 /note="source:INTACT280_F60_scaffold_5-int 9273 9683" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10828630..10828697 /note="source:scaffold_9_CACTA_0931 18203 18266" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10828647..10828702 /note="source:CACAO_M_E58324_F9_scaffold_9 9903 9959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10828685..10829122 /note="source:INTACT280_F60_scaffold_5-int 13870 14307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10829188..10830369) /note="source:CACAO_M_S_E119191_F3_scaffold_9 3229 4810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10832886..10834090) /note="source:CACAO_M_S_E119191_F3_scaffold_9 2002 3234" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10834089..10835677) /note="source:CACAO_M_S_E15173_F4_scaffold_2 265 1864" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10835678..10841171) /note="source:CACAO_M_E42503_F14_scaffold_5 4752 10266" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10841172..10841896) /note="source:CACAO_M_S_E17777_F2_scaffold_3 7337 8036" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10843412..10845858 /note="source:CACAO_M_S_E123918_F7_scaffold_10 1 2443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10845854..10853293) /note="source:INTACT511_F7_scaffold_4-int 29 7478" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10853300..10853512 /note="source:CACAO_M_S_E64832_F14_scaffold_5 11441 11661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10854163..10854214 /note="source:INTACT413_F209_scaffold_13-int 5311 5362" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10854311..10854475) /note="source:CACAO_M_E35188_F7_scaffold_5 7024 7191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10855172..10855257) /note="source:CACAO_M_E13157_F7_scaffold_3 5871 5956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10855260..10857961) /note="source:INTACT180_F13_scaffold_3-int 3163 5777" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10858521..10868250 /note="source:INTACT732_F315_scaffold_6-int 1 9730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10868353..10868506) /note="source:CACAO_M_S_E31774_F7_scaffold_3 5220 5373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10868718..10869612) /note="source:CACAO_M_E35188_F7_scaffold_5 4042 4934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10870527..10871266) /note="source:CACAO_M_S_E17777_F2_scaffold_3 7337 8030" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10872702..10873550 /note="source:INTACT413_F209_scaffold_13-int 5311 6159" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10873548..10876502 /note="source:CACAO_M_E10603_F306_scaffold_2 4817 7770" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10876501..10878352) /note="source:CACAO_M_S_E64832_F14_scaffold_5 4448 6300" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10878353..10881660 /note="source:CACAO_M_S_E68106_F231_scaffold_6 1 2640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10881656..10884553 /note="source:CACAO_M_E45464_F86_scaffold_6 1 2898" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10884635..10885896 /note="source:CACAO_M_E4870_F14_scaffold_2 8921 10180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10886734..10888698) /note="source:CACAO_M_S_E15173_F4_scaffold_2 10413 12479" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10888686..10888893 /note="source:INTACT607_F3_scaffold_4-int 3370 3600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10888714..10889410) /note="source:CACAO_M_S_E15173_F4_scaffold_2 9345 10033" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10889864..10890212 /note="source:CACAO_Again_on_E205_scaffold_9 17 378" /mobile_element_type="transposon:TIR/hAT" mobile_element 10890207..10891353 /note="source:CACAO_Again_on_E205_scaffold_9 8330 8866" /mobile_element_type="transposon:TIR/hAT" mobile_element 10891491..10891664 /note="source:CACAO_Again_on_E205_scaffold_9 8863 9053" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(10892532..10894255) /note="source:INTACT10_F4_scaffold_6-int 1185 2920" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10894255..10897499 /note="source:INTACT785_F332_scaffold_2-int 4752 7295" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10897503..10897762 /note="source:CACAO_M_S_E84261_F4_scaffold_6 754 1018" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10898940..10899035 /note="source:scaffold_5_CACTA_0585 6894 6989" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10899077..10901556 /note="source:scaffold_5_CACTA_0585 9511 11993" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10901677..10902557 /note="source:INTACT410F_F357_scaffold_4-int 44 925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10902679..10902940 /note="source:scaffold_9_CACTA_0927 15067 15327" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10902710..10903263 /note="source:INTACT410F_F357_scaffold_4-int 1475 2046" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10903665..10904413 /note="source:scaffold_6_CACTA_0711 1671 2413" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10905477..10908445 /note="source:CACAO_M_E65323_F12_scaffold_9 7736 10628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10908499..10913749) /note="source:INTACT597_F267_scaffold_2-int 8073 13360" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10912852..10915271) /note="source:scaffold_2_CACTA_0262 6405 8828" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10913140..10916075 /note="source:CACAO_M_E65323_F12_scaffold_9 7737 10631" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10916098..10916481 /note="source:INTACT563_F255_scaffold_10-int 2744 3133" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10918602..10919350) /note="source:CACAO_M_E34534_F369_scaffold_5 1958 2701" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10919358..10920883 /note="source:CACAO_M_S_E68106_F231_scaffold_6 1067 2640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10922606..10922647) /note="source:scaffold_6_CACTA_0702 14627 14668" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10922829..10922910) /note="source:CACAO_Mariner_E180_scaffold_6 1519 1602" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 10925426..10927272 /note="source:CACAO_M_S_E101631_F270_scaffold_9 15584 17461" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10925676..10928355 /note="source:scaffold_7_CACTA_0793 1 2723" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10928357..10930955 /note="source:CACAO_M_E47740_F12_scaffold_6 4101 6719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10930957..10932206 /note="source:CACAO_M_S_E101631_F270_scaffold_9 18610 19860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10932378..10933110) /note="source:CACAO_M_E69306_F123_scaffold_9 5459 6187" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10933080..10934659 /note="source:CACAO_M_E42691_F9_scaffold_5 4337 5913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10934525..10934674) /note="source:CACAO_M_E42395_F3_scaffold_5 4520 4669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10937926..10938073 /note="source:CACAO_M_S_E19254_F335_scaffold_3 878 1023" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10938000..10938076) /note="source:INTACT597_F267_scaffold_2-int 369 446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10938077..10940805 /note="source:CACAO_M_E32997_F96_scaffold_4 3 2728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10940806..10942361 /note="source:CACAO_M_S_E5046_F335_scaffold_1 1021 2635" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10942874..10944022 /note="source:CACAO_M_S_E18857_F335_scaffold_3 1451 2609" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10946127..10948616 /note="source:scaffold_7_CACTA_0793 406 2935" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10947324..10949690 /note="source:CACAO_M_S_E101631_F270_scaffold_9 17527 19859" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10950478..10953332 /note="source:CACAO_M_E45502_F322_scaffold_6 1 2855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10953256..10953347) /note="source:scaffold_2_CACTA_0262 5403 5495" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10954864..10955110) /note="source:CACAO_M_E23991_F4_scaffold_4 3994 4249" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10956260..10956557 /note="source:INTACT224_F176_scaffold_8-int 2717 2988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10956855..10956967 /note="source:INTACT224_F176_scaffold_8-int 2991 3102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10957171..10957479 /note="source:INTACT224_F176_scaffold_8-int 3353 3662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10957480..10967381 /note="source:CACAO_M_E45504_F98_scaffold_6 1 9902" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10960520..10966266 /locus_tag="TCM_028106" /note="dbxref CacaoGD:Thecc1EG028106" mRNA join(10960520..10960951,10966019..10966266) /locus_tag="TCM_028106" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003239t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3scxLoc265t3_G3" CDS join(10960539..10960951,10966019..10966061) /locus_tag="TCM_028106" /note="paralog of Thecc1EG003239t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26450.1" /translation="MADRPRASTQRGRGRRGRVTRPVGLDTPVSRQEEGQSSGDVDRH PARGITIEDLAAGLQGVNRVVEMMATRMEDIQRVVEGRPTVQESPSSQGQADHQHHEE ERGHLDISLPDFLKLKPPTFSGSDASKKPQVFLDKIYLWWKIKNKKSKS" CDS join(10961571..10962392,10965159..10965341) /locus_tag="TCM_028027" /note="paralog of Thecc1EG035772t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein" /protein_id="EOY26421.1" /db_xref="Phytozome:Glyma18g33480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLE9" /translation="MRQQDSRQSSQVIRSCDTCGRRHSGRCFLTTKTCYGCGQPGHIR RDCPMAHQSPDFARGSTQPASSALSVVVSSGREVSGSRGKGAGTSSQGRPSGSGHQSS IGRGQARVFALTQQEAQTSNAVVSGILSVCNMNARVLFDPGATHSFISPCFASRLGRG RVRREEQLVVSTPLKEIFVAEWEYESCVVRVKDKDTSVNLVVLDTLDFDVILGMNWLS PCHASVDCYHKLVRFDFPGEPSFSIQGDRSNAPTNLISVISARRLLRQGCIGYLAVLQ DDLSYEEQPVAILDRQVKKLRSKDVASVKVLWRNHTSEEVTWEAEDEMRTKHPHLFDM " gene 10962966..10965343 /locus_tag="TCM_028107" /note="dbxref CacaoGD:Thecc1EG028107" mRNA join(10962966..10963243,10963459..10965343) /locus_tag="TCM_028107" /product="DNA/RNA polymerases superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013127t1" /inference="similar to AA sequence:Phytozome:Glyma04g32860.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2909t3_G2" CDS join(10963087..10963243,10963459..10965341) /locus_tag="TCM_028107" /note="paralog of Thecc1EG013127t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein" /protein_id="EOY26451.1" /db_xref="Phytozome:Glyma04g32860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q53M59" /translation="MLSSPSVSFGSKVLHSWGMWYLRRGYELIQRKLKQWKNGQGQHQ LRRLEALWVGGVLMQHGKVIAYASRQLKRHEQNYPILDLEMAVIVFALKIWRHYLYGE TCEIYTDHKSLKYIFQQRDFNLRQRRWMELLKDYDCTILYHPGKANVVADALSRKSMG SLAHISIGRRSLVREIHSLGDIGVRLEVAETNALLAHFRVRPILMDRIKEAQSKDEFV IKALEDPRGRKGKMFTKGTDGVLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGATK MYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMD FVTGLPRTSGGYDSIWIVVDQLTKSAHFLPVKTTYGAAHYARVYVDEIVRLHGIPISI VSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLGV RWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDAT EKIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVFLKFSPTKGVMRFGKKGKLSPR YIGPFKILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNLDPSHVIRYETIQLQDDL SYEEQPVAILDRQVKKLRSKDVASVKVLWRNHTSEEVTWEAEDEMRTKHPHLFDM" mobile_element 10967619..10968127 /note="source:CACAO_M_E45504_F98_scaffold_6 9903 10411" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10968125..10968588 /note="source:INTACT224_F176_scaffold_8-int 3655 4117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10968128..10968153 /note="source:scaffold_2_CACTA_0262 14557 14584" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10968582..10969716 /note="source:INTACT597_F267_scaffold_2-int 10686 11842" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10969462..10978622) /locus_tag="TCM_028108" /note="dbxref CacaoGD:Thecc1EG028108" mRNA complement(join(10969462..10970202,10970452..10970584, 10973453..10973696,10978605..10978622)) /locus_tag="TCM_028108" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(10970105..10970202,10970452..10970584, 10973453..10973524)) /locus_tag="TCM_028108" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26452.1" /translation="MNQGKCNTPYFDIVTNKAYRMQIEVFEVALQHNISSNEEKGNDS HSTEKGSMDSIAESRFVQECESQGSENGEDEENPQEAEDDLECDPLMCTGLDSYSC" mobile_element 10970676..10971416 /note="source:INTACT146F_F14_scaffold_2-int 3174 3914" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10971418..10972186) /note="source:CACAO_M_E24592_F195_scaffold_4 1 532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10976489..10976565) /note="source:INTACT265_F12_scaffold_7-int 17481 17551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10976958..10977886) /note="source:CACAO_M_S_E99244_F4_scaffold_9 5403 6343" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10977829..10977903 /note="source:CACAO_M_S_E15214_F378_scaffold_2 815 884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10977842..10978596 /note="source:CACAO_M_S_E99244_F4_scaffold_9 10229 11019" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10978595..10981253 /note="source:CACAO_M_E57660_F369_scaffold_9 7804 10510" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10981254..10982072 /note="source:CACAO_M_S_E99244_F4_scaffold_9 11040 11882" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10982670..10984526) /note="source:CACAO_M_S_E68231_F4_scaffold_6 3 1861" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10985006..10985119 /note="source:CACAO_M_S_E7818_F60_scaffold_2 18516 18620" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10985017..10985122) /note="source:CACAO_M_S_E50960_F369_scaffold_4 2623 2792" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10985126..10986563 /note="source:CACAO_Mutator_E1888_scaffold_9 571 1992" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(10986172..10987412) /note="source:CACAO_Mutator_E1012_scaffold_5 5658 6911" /mobile_element_type="transposon:TIR/Mutator" mobile_element 10987284..10989183 /note="source:CACAO_Mutator_E1888_scaffold_9 2401 4974" /mobile_element_type="transposon:TIR/Mutator" mobile_element 10989534..10990340 /note="source:CACAO_Mutator_E1410_scaffold_6 5289 5604" /mobile_element_type="transposon:TIR/Mutator" mobile_element 10990567..10990643 /note="source:scaffold_1_CACTA_0009 9424 9500" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10990684..10990989) /note="source:CACAO_Mutator_E1410_scaffold_6 5705 6010" /mobile_element_type="transposon:TIR/Mutator" mobile_element 10990739..10991026 /note="source:CACAO_Mutator_E1410_scaffold_6 5707 5995" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(10991011..10994682) /note="source:CACAO_M_E33977_F20_scaffold_4 5406 9028" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10994394..10995018 /note="source:scaffold_1_CACTA_0009 13258 13874" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10995223..10995356 /note="source:INTACT336_F12_scaffold_2-int 10067 10200" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10999047..11009719 /locus_tag="TCM_028111" /note="dbxref CacaoGD:Thecc1EG028111" mRNA join(10999047..10999955,11000269..11000579, 11000768..11001160,11001835..11001970,11002063..11002235, 11002357..11002660,11002976..11002992,11003100..11003157, 11003777..11003898,11004443..11004500,11005017..11005228, 11005336..11005452,11005635..11005683,11005777..11005856, 11006015..11006089,11006200..11006288,11006364..11006413, 11006501..11006541,11006638..11006844,11007258..11007325, 11007410..11007470,11007576..11008338,11009673..11009719) /locus_tag="TCM_028111" /product="Glycosyl hydrolase 9A1" /inference="alignment:exonerate- protein:2:ricco:30063.m001436" /inference="similar to AA sequence:Phytozome:POPTR_0003s15140.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3114t1" CDS join(10999577..10999955,11000269..11000579, 11000768..11001160,11001835..11001970,11002063..11002235, 11002357..11002660,11002976..11002992,11003100..11003157, 11003777..11003898,11004443..11004500,11005017..11005228, 11005336..11005452,11005635..11005683,11005777..11005856, 11006015..11006089,11006200..11006288,11006364..11006413, 11006501..11006541,11006638..11006844,11007258..11007325, 11007410..11007470,11007576..11007818) /locus_tag="TCM_028111" /codon_start=1 /product="Glycosyl hydrolase 9A1" /protein_id="EOY26453.1" /db_xref="Phytozome:POPTR_0003s15140.1" /db_xref="TAIR:AT5G49720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GK28" /translation="MSMFGRDPWGGPLEINAADSATDDDRSRNLQDLDRAALSRPLDE TQQSWLLGPGEQKKKKYVDLGCIIVSRKIFVWTVGTLLVSGLLAGFITLIVKTVPRHH HAHGPPDNYTRALHKALMFFNAQRSGKMPKHNNVSWRGNSCLQDGKSDPSTLMKDLVG GYYDAGDAIKFNFPASFAMTMLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFN NSADTIDRVAAQDIDYPRPVYECHSCSDLAAEMAAALASASIVFKDNKAYSQKLVHGA RTLFEFARDQRGRYSAGGSDAAIFYNSSSYWDEFVWGGAWLYYATGNSSYLQLATHPK LAKHAGAFWGGPDYGVLSWDNKLAGAQVLLSRLRLFLSPGYPYEEILRTFHNQTSIVM CSFLPVFTSFNRTKGGLIQLNHGRPQPLQYVVNAAFLATLYSDYLDAADTPGWYCGPN FYSTDVLRDFAKTQIDYILGKNPRKMSYIVGFGNHYPRHVHHRGASIPKNKIKYNCKG GWKWRDTTKPNPNTLVGAMVAGPDKHDGFHDVRTNYNYTEPTLAGNAGLVAALVALSV SLDFVFFGDKDLAIVVGIYVIFVLNMAEEESSSLQYSPTWVVASVCFLIVLISLIAER GLHRLGKFLKHNKQDALFEALQKLKEELMLLGFISLLLTVSQGLVSRMCIPDDLVSNM LPCKRDSEKKGHEEYSPQLINNRRRLFSTESSSGQCSHEGQVPLLSLEALHQLHIFIF VLAVVHVIFCVTTMVLGGARIREWKKWEKWVSEGRREETHRHRKLFQQHAQGFWRKAA VVSWTISFFKQFYGSVTMSDYIALREGFIMAHCPGHSKFNFHKYMMRTLEADFKKVVG ISWYLWLFVVVFLLLNVKGWHTYFWLSFLPVVLLLLVGAKLEHIIIRLAQDVIEKRER GEGAQVKPSDEHFWFGRPGIVLHLIHFILFQNSFELAFFFWILCTYGFRSCIMEKVGY IIPRLIMGVMVQVLCSYITLPLYVLVTQMGSKFKEGMFDDFVVESLGKWRQGRRGETS MGGSSSAHVGQVHRITKESCQSIQIEEKQTMNIEENIKSITELSVSGQNP" mobile_element complement(11008607..11008717) /note="source:scaffold_9_CACTA_0937 9955 10063" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11016675..11019524 /note="source:CACAO_M_E45515_F15_scaffold_6 1 2831" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(11026895..11031045) /locus_tag="TCM_028112" /note="dbxref CacaoGD:Thecc1EG028112" mRNA complement(join(11026895..11027499,11028893..11029110, 11029213..11029449,11029901..11030155,11030674..11031045)) /locus_tag="TCM_028112" /product="SNARE associated Golgi protein family" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g00730.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016110t1" /inference="similar to AA sequence:Phytozome:GSVIVT01023098001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04061t00001" CDS complement(join(11027232..11027499,11028893..11029110, 11029213..11029449,11029901..11030155)) /locus_tag="TCM_028112" /note="paralog of Thecc1EG016110t1" /codon_start=1 /product="SNARE associated Golgi protein family" /protein_id="EOY26454.1" /db_xref="Phytozome:GSVIVT01023098001" /db_xref="TAIR:AT2G02370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVQ5" /translation="MPNSSEDLEKQSTNSGHHVREDSEYVRLVTSDEEPTATEMDTLQ PQPPTRSNSFVWWIKAIVFCIFTLILLLIFLKWGVPFLFEKVLFPIMQWEATAFGRPV LAIVLVASLALFPVFLIPSGPSMWLAGMIFGYGLGFLIIMVGTTVGMVLPYLIGLLFR DRIHHWLKKWPQKAAMIRLAGEGSWSHQFRVVALFRVSPFPYTIFNYVIVVTSMRFWP YLCGSIAGMIPEAFIYIYSGRLIRTLADVKYGNHHLTAVEIIYNIISLIIAIVTTIAF TVYAKRALKDLENGETKEEDDSASYQGGLEMEKLPLERPKNLGFMSFSS" mobile_element 11033326..11036238 /note="source:CACAO_M_S_E68170_F83_scaffold_6 1 2913" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11037718..11038580 /note="source:INTACT49_F22_scaffold_9-int 9903 10756" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11038540..11046127) /note="source:CACAO_M_E45234_F22_scaffold_6 1 7496" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(11046082..11058449) /locus_tag="TCM_028114" /note="dbxref CacaoGD:Thecc1EG028114" mRNA complement(join(11046082..11046211,11057471..11058449)) /locus_tag="TCM_028114" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013042t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage" mobile_element complement(11047126..11047422) /note="source:CACAO_Mariner_E229_scaffold_9 11375 11669" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(11048833..11049251) /note="source:INTACT88_F12_scaffold_4-int 12720 13124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11051269..11053039) /note="source:CACAO_M_E69551_F193_scaffold_9 4627 6401" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11053039..11054142) /note="source:CACAO_M_E69551_F193_scaffold_9 3404 4510" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11055074..11057602) /note="source:CACAO_M_E13604_F90_scaffold_3 8596 11173" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(11057878..11058258) /locus_tag="TCM_028114" /note="paralog of Thecc1EG013042t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26455.1" /translation="MAPKRVRQNSSGSFDHTRFMSANVVARHVNSLANKIAIPERGLD QGITHLDLQPMIDGHHWQKFCASSVATKIPLVKEFYANAIEAANDFVFVRAKLVPFSS HAINEFYETPNIENDGYGQYLAKH" mobile_element 11058547..11058563 /note="source:scaffold_4_CACTA_0510 2809 2822" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11058564..11061331 /note="source:CACAO_M_S_E68179_F15_scaffold_6 1 2751" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11061481..11061491) /note="source:scaffold_1_CACTA_0011 3754 3775" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11061492..11062367 /note="source:CACAO_M_E52239_F256_scaffold_7 1 877" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11061761..11062946) /note="source:CACAO_M_E42514_F40_scaffold_5 15207 16417" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11062364..11064307 /note="source:CACAO_M_E5702_F90_scaffold_2 7101 9047" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11063959..11064363 /note="source:CACAO_M_E43348_F5_scaffold_5 19078 19488" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11066107..11066800 /note="source:CACAO_M_S_E99574_F14_scaffold_9 9206 9933" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11066159..11066477) /note="source:CACAO_M_S_E14583_F322_scaffold_2 7913 8244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11066478..11066836 /note="source:CACAO_M_E5702_F90_scaffold_2 9047 9407" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11066837..11074421) /note="source:CACAO_M_S_E14583_F322_scaffold_2 1 7912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11074422..11077324 /note="source:CACAO_M_E73087_F12_scaffold_10 1011 3838" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11077325..11081777) /note="source:INTACT740_F9_scaffold_10-int 3317 7871" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11081778..11089075 /note="source:INTACT220_F53_scaffold_6-int 1 7298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11089076..11090985) /note="source:INTACT740_F9_scaffold_10-int 1416 3321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11091016..11093925 /note="source:CACAO_M_E14113_F106_scaffold_3 7637 10514" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11093929..11095305) /note="source:INTACT740_F9_scaffold_10-int 6447 7871" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11095306..11097022) /note="source:CACAO_M_S_E7632_F12_scaffold_2 4614 6331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11097023..11097327 /note="source:INTACT135F_F90_scaffold_2-int 3994 6004" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11097298..11097335 /note="source:CACAO_M_E52038_F96_scaffold_7 5890 5927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11097714..11098562) /note="source:CACAO_M_S_E15347_F33_scaffold_2 6970 7818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11098663..11102063 /note="source:CACAO_M_S_E5695_F256_scaffold_2 4610 8080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11102036..11102802 /note="source:CACAO_M_E22318_F12_scaffold_3 6971 7736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11102760..11102808) /note="source:CACAO_M_E5899_F5_scaffold_2 24459 24507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11105043..11107824 /note="source:CACAO_M_S_E68196_F233_scaffold_6 1 2782" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11112716..11113044 /note="source:scaffold_5_CACTA_0586 11452 11775" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11113077..11116260 /note="source:CACAO_M_E3248_F5_scaffold_1 19199 22369" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11118904..11120164 /note="source:CACAO_M_S_E32590_F18_scaffold_4 7121 8410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11121406..11121554 /note="source:CACAO_M_E35674_F13_scaffold_5 4515 4660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11121425..11122089) /note="source:CACAO_M_E33282_F13_scaffold_4 11860 12520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11122304..11123561) /note="source:CACAO_M_E24592_F195_scaffold_4 19686 20876" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11124049..11125088) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18144 19228" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11125270..11126050) /note="source:CACAO_M_S_E83372_F14_scaffold_6 1409 2189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11125807..11127379 /note="source:CACAO_Mariner_E229_scaffold_9 8951 10656" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(11127373..11127860) /note="source:INTACT319_F3_scaffold_1-int 1026 1516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11127862..11129549 /note="source:CACAO_M_E45544_F3_scaffold_6 1 1688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11129550..11130422) /note="source:scaffold_8_CACTA_0859 500 1383" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11130815..11131286) /note="source:scaffold_8_CACTA_0859 2 472" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11132296..11132695) /note="source:scaffold_8_CACTA_0859 15426 15825" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11133147..11133450) /note="source:scaffold_8_CACTA_0859 791 1096" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11133451..11136813) /note="source:CACAO_M_S_E16543_F3_scaffold_2 4821 8191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11135747..11138015 /note="source:CACAO_M_E12058_F3_scaffold_2 2358 4617" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11140474..11141595) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3554 4755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11142581..11142666) /note="source:CACAO_M_E3326_F17_scaffold_1 11865 11953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11145268..11145415) /note="source:CACAO_M_S_E146236_F17_scaffold_12 7124 7270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11145981..11154534) /note="source:INTACT1327F_F381_scaffold_8-int 708 9257" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 11147194..11150202 /locus_tag="TCM_028124" /note="dbxref CacaoGD:Thecc1EG028124" mRNA join(11147194..11147264,11148986..11150202) /locus_tag="TCM_028124" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.77 coverage" CDS 11149311..11149520 /locus_tag="TCM_028124" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26456.1" /translation="MPPRRGLPPIARSIGRGRGRSRHRQPNLVRGNRLRLLLRQHLLL NRLRLLHILHLFHHLLVFLYSCHVS" mobile_element complement(11154521..11155665) /note="source:INTACT1327F_F381_scaffold_8-int 6069 7216" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11156837..11158386 /note="source:CACAO_M_S_E146236_F17_scaffold_12 7438 8927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11160422..11161223) /note="source:scaffold_9_CACTA_0937 10167 10957" /mobile_element_type="transposon:TIR/CACTA" gene complement(11161766..11162933) /locus_tag="TCM_028126" /note="dbxref CacaoGD:Thecc1EG028126" mRNA complement(join(11161766..11161985,11162357..11162933)) /locus_tag="TCM_028126" /product="Copia-like retrotransposable element, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012998t1" /inference="similar to AA sequence:Phytozome:Glyma07g34840.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage" CDS complement(join(11161940..11161985,11162357..11162883)) /locus_tag="TCM_028126" /note="paralog of Thecc1EG012998t1" /codon_start=1 /product="Copia-like retrotransposable element, putative" /protein_id="EOY26457.1" /db_xref="Phytozome:Glyma07g34840.1" /translation="MQVPTDHHMIAAKRILRYLKKIEFYGIHQTKSTEFTLCGYTDSD FTRSSEDAKNTSSYLFTLGNGPFSWNSHKQSIVAQSLAESEYVAAAEAAYQALWLRKL LMDIKFEQKFPTDLFIDNKSAISIVKNPVWHGKTKHINVKYHAVRDIVEKNEINVQYC PSELQLADIFTKPFQKKLGQSPSRISHYYP" mobile_element 11161997..11169584 /note="source:INTACT241_F183_scaffold_6-int 1 7588" /mobile_element_type="retrotransposon:LTR/Copia" gene 11171127..11172550 /locus_tag="TCM_028129" /note="dbxref CacaoGD:Thecc1EG028129" mRNA 11171127..11172550 /locus_tag="TCM_028129" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene06898.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034309t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s26760.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage" CDS 11171300..11172274 /locus_tag="TCM_028129" /note="paralog of Thecc1EG034309t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26458.1" /db_xref="Phytozome:POPTR_0005s26760.1" /translation="MVSSPRSPKAEISASGLTRKRVAALSENELLAFIQSVISDEQKM EPFYVLDLGVVADLFDMWTSNLPMVQPFYAVKCNPNPDPLREMAALGSNFDCASRAEI EAILALGVLPDRIVFANSCKAESHIKYAASVGVNLTTFDSKEELEKIRKWHPECALLI RIKSPEISGARFPLGAKFGALPEEVVPLLQAAQAGKFTVSGVSFHIGSGATNFRAFEE AIAAAKTVFEKAAQLGMPKMHILNIGGGFSAGPLFTDTASVVKTALQKYFFNEPCLEV MAEPGQYFAESSFTLAASIIGKRIRDELRQYWINDGIYGVHELFAVRS" gene complement(11173705..11192479) /locus_tag="TCM_028130" /note="dbxref CacaoGD:Thecc1EG028130" mRNA complement(join(11173705..11174020,11174917..11175051, 11175183..11175329,11176537..11176709,11182509..11182596, 11184734..11184951,11186558..11186618,11191212..11191543, 11192026..11192055,11192131..11192479)) /locus_tag="TCM_028130" /product="DNA repair protein recA" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005038001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037642t1" /inference="similar to AA sequence:Phytozome:GSVIVT01005038001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2942t2" CDS complement(join(11173733..11174020,11174917..11175051, 11175183..11175329,11176537..11176709,11182509..11182596, 11184734..11184951,11186558..11186618,11191212..11191295)) /locus_tag="TCM_028130" /note="paralog of Thecc1EG037642t1" /codon_start=1 /product="DNA repair protein recA" /protein_id="EOY26459.1" /db_xref="Phytozome:GSVIVT01005038001" /db_xref="TAIR:AT3G10140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TSA5" /translation="MVISLPSLTLNVVSRSSRFFSLLPSFPQYARREAITCIGAPTYH FSSAADFSECEFDEFHDDNKETKKDTALRQALSQLAGDFGRESMLSLQRFFNSRRAPV ISTGSLKLDLALGIGGLPKGRMVEIYGREASGKTTLALHIIKEAQKLGGYCAYLDVEN ALDPSFVESIGVNTRNLLISHPDSAENLLCMVHTLTKSGSVDVIVVDSVAALVPQCEL DGSIGDSGRDVQARIMTQALRKIYSSLCCSRTLIIFLNQVRYNSKSGQAFGHMEEVTC GGNALKFYSAIRLRMIRTGLLKSEDKITGLGVCVQVMKNKFAPAMKKAELGIQFGRGF SCESEVLELACEYEIISKEGSNFLIEGEAFGDKEKAEQYLAENDGVLEKIVMILRTKL FERKI" mobile_element 11177524..11181856 /note="source:CACAO_M_S_E68217_F29_scaffold_6 1 4333" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11191128..11191188 /note="source:CACAO_M_E14113_F106_scaffold_3 13817 13885" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(11191843..11195262) /locus_tag="TCM_028131" /note="dbxref CacaoGD:Thecc1EG028131" mRNA complement(join(11191843..11192055,11193829..11193992, 11194073..11194119,11194244..11194346,11194469..11194944, 11195000..11195262)) /locus_tag="TCM_028131" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.17 coverage" CDS complement(join(11193840..11193992,11194073..11194119, 11194244..11194346,11194469..11194944,11195000..11195147)) /locus_tag="TCM_028131" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26460.1" /translation="MQLPEGAFDQEAPPVEAEASLALAAGSKKASRFFCKVAIRGWQC AGISSQTTGLESALDPAADKPNVRLSLNKHDKRGKKNRVTGEKNRELTAPAENDETLG QKSVHEDPSENSKNYFPNPPTRVATFMHGDGQLRAESGSGGQNESMDIMEGSGEHRPV VEQGASQTKNTGSAKNTGLIKPMEGKMVLDDAHAGEDEKSAEWKSHAEPLAIVQALVE VDGSKASIVDKVTGPRQMADSEEEEWKPMLKILQIWSPFRVHPRVRHRRYSDTKVSVD KIFNLASDKAVDMEENDEASDEDAISVNFAAS" mobile_element 11196523..11196867 /note="source:INTACT714_F310_scaffold_9-int 10193 10521" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11196864..11198399 /note="source:scaffold_3_CACTA_0385 3268 4875" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11198404..11198975 /note="source:scaffold_2_CACTA_0253 5898 6448" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11199782..11202733 /note="source:CACAO_M_E45556_F245_scaffold_6 1 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11202936..11204435) /note="source:CACAO_M_E33282_F13_scaffold_4 7516 9078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11204430..11209783) /note="source:CACAO_M_S_E84376_F22_scaffold_6 6355 14237" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11210444..11210811) /note="source:INTACT172_F47_scaffold_2-int 3459 3825" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11210812..11211763 /note="source:CACAO_M_E13339_F47_scaffold_3 1 919" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11212592..11212827 /note="source:scaffold_9_CACTA_0930 1288 1525" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11213015..11216164 /note="source:INTACT172_F47_scaffold_2-int 1 3158" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11217556..11219251 /note="source:INTACT594_F265_scaffold_8-int 1399 3112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11220502..11221527) /note="source:CACAO_M_E52137_F322_scaffold_7 1787 2812" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11221628..11222346 /note="source:CACAO_M_E32955_F98_scaffold_4 1052 1768" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11224383..11224495) /note="source:scaffold_5_CACTA_0584 1924 2035" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11224387..11225336 /note="source:CACAO_M_E12953_F322_scaffold_3 2000 3307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11226458..11228024 /note="source:CACAO_M_E45558_F17_scaffold_6 1 1567" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(11229947..11232138) /locus_tag="TCM_028132" /note="dbxref CacaoGD:Thecc1EG028132" mRNA complement(join(11229947..11230492,11231273..11232138)) /locus_tag="TCM_028132" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(11230044..11230492,11231273..11231633)) /locus_tag="TCM_028132" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26461.1" /translation="MLVFEWTPDFQSKKESSFVLVWISFSNLRAHLYEKSALFVIAKI MGRLLMVDKAIANGTRPSMMRIYVEYNCPKPLVDQVWIVTRDRKTEDVTKGFMQKVEF ARPSEYCTHAVMWDTAFRLDNACNVTMRKQKKKKKGHPGERSVGLALADDDKFFDKEQ MREVNKHSVAQSMHCFDKVESSDENSPLLENKLGNCGDNKEFSSIPSHAGSSHATIKV HLTSMHRSKSGNVFLVTLNAQYYSDEAEGCEEKDRMQEYSISAGFPTHTFP" mobile_element 11232218..11232393 /note="source:INTACT594_F265_scaffold_8-int 3098 3272" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11234985..11236791 /note="source:INTACT594_F265_scaffold_8-int 4389 6201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11236641..11236810) /note="source:scaffold_3_CACTA_0385 7629 7799" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11236855..11237653 /note="source:INTACT83_F5_scaffold_9-int 11472 12287" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11237634..11239868 /note="source:INTACT83_F5_scaffold_9-int 867 3004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11239870..11240965 /note="source:INTACT83_F5_scaffold_9-int 2944 4029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11241047..11245059 /note="source:INTACT83_F5_scaffold_9-int 4026 8077" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11245055..11248261 /note="source:CACAO_M_S_E109853_F60_scaffold_9 6928 10141" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11248262..11250122 /note="source:CACAO_M_S_E68231_F4_scaffold_6 1 1861" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11250123..11251220 /note="source:CACAO_M_S_E109853_F60_scaffold_9 10137 11237" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11251222..11251738 /note="source:CACAO_M_S_E64832_F14_scaffold_5 2763 3313" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11252435..11252531 /note="source:INTACT83_F5_scaffold_9-int 11982 12078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11253416..11254280) /note="source:CACAO_M_S_E4413_F3_scaffold_1 17694 18561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11254280..11255690 /note="source:scaffold_8_CACTA_0859 16514 17937" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11257764..11259847) /note="source:CACAO_M_E36294_F51_scaffold_5 11303 12572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11259848..11266327 /note="source:INTACT1327F_F381_scaffold_8-int 1 6476" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11266332..11267568) /note="source:CACAO_M_S_E64023_F13_scaffold_5 7222 8472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11267569..11268798 /note="source:CACAO_M_S_E5046_F335_scaffold_1 1 1229" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11268959..11270393 /note="source:CACAO_M_E33160_F143_scaffold_4 5356 6807" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11270390..11271799) /note="source:CACAO_M_S_E64023_F13_scaffold_5 5813 7226" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11272054..11274661 /note="source:CACAO_M_S_E68246_F231_scaffold_6 1 2608" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11278943..11279363) /note="source:CACAO_M_S_E109853_F60_scaffold_9 11427 11847" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11279360..11279616 /note="source:CACAO_M_S_E5046_F335_scaffold_1 3300 3553" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11281578..11282066) /note="source:CACAO_M_S_E64832_F14_scaffold_5 2824 3264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11281723..11283023 /note="source:CACAO_M_S_E31635_F14_scaffold_3 2854 4199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11283153..11283334) /note="source:CACAO_M_S_E109853_F60_scaffold_9 5541 5722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11283459..11283507 /note="source:CACAO_M_S_E109853_F60_scaffold_9 17002 17049" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11283466..11283506) /note="source:CACAO_M_S_E64832_F14_scaffold_5 10135 10175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11286840..11287255) /note="source:CACAO_M_E3248_F5_scaffold_1 2875 3307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11287256..11288096) /note="source:CACAO_M_E5899_F5_scaffold_2 21876 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11289731..11290410) /note="source:CACAO_M_E5899_F5_scaffold_2 19652 20325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11290727..11290825 /note="source:CACAO_Mariner_E229_scaffold_9 220 320" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(11290815..11291548) /note="source:CACAO_M_E3248_F5_scaffold_1 1653 2382" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11291554..11291809) /note="source:INTACT39F_F22_scaffold_1-int 3809 4048" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11291877..11291941) /note="source:CACAO_M_S_E109853_F60_scaffold_9 10862 10926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11291939..11292389 /note="source:CACAO_M_S_E5046_F335_scaffold_1 3712 4140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11294807..11295392 /note="source:CACAO_M_S_E5046_F335_scaffold_1 17555 18135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11295596..11298591 /note="source:CACAO_M_E45586_F7_scaffold_6 1 2996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11299735..11301724 /note="source:CACAO_M_E3248_F5_scaffold_1 1653 3609" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11301725..11307834 /note="source:CACAO_M_S_E7632_F12_scaffold_2 1 6139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11307874..11308250 /note="source:CACAO_M_E42809_F5_scaffold_5 10454 10844" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11308251..11309321 /note="source:CACAO_M_E58728_F12_scaffold_9 1 1071" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11309323..11310041 /note="source:CACAO_M_E3248_F5_scaffold_1 3539 4267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11311637..11311754) /note="source:CACAO_M_E35188_F7_scaffold_5 5611 5714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11311747..11312765 /note="source:INTACT563_F255_scaffold_10-int 4848 5860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11312764..11314971) /note="source:CACAO_M_E24682_F51_scaffold_4 1 2209" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11314972..11320946 /note="source:INTACT1896F_F100_scaffold_16-int 1933 7818" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(11320390..11330038) /note="source:scaffold_4_CACTA_0492 3119 17540" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11330039..11337090 /note="source:INTACT1896F_F100_scaffold_16-int 229 7229" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(11337091..11339174) /note="source:scaffold_4_CACTA_0492 1 3118" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11339175..11341831 /note="source:CACAO_M_S_E86253_F7_scaffold_7 1 2663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11341746..11341992) /note="source:CACAO_M_S_E54060_F7_scaffold_5 1 293" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11341993..11343339 /note="source:INTACT918F_F377_scaffold_6-int 7863 9226" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(11355381..11358363) /note="source:CACAO_M_E50688_F7_scaffold_7 1 2985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11358364..11363333) /note="source:scaffold_4_CACTA_0492 2508 7492" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11363334..11366318 /note="source:CACAO_M_S_E72367_F245_scaffold_6 1 2985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11366319..11371022) /note="source:scaffold_4_CACTA_0492 11427 16158" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11371024..11371647 /note="source:CACAO_M_S_E4591_F5_scaffold_1 17896 18519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11371695..11371981) /note="source:INTACT695_F301_scaffold_5-int 3562 3817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11372041..11372084) /note="source:CACAO_M_E43348_F5_scaffold_5 19720 19757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11398501..11398898 /note="source:INTACT918F_F377_scaffold_6-int 17148 17497" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 11425334..11425580 /note="source:INTACT918F_F377_scaffold_6-int 12269 12515" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 11431360..11431760 /note="source:INTACT918F_F377_scaffold_6-int 2435 2835" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 11433172..11433593 /note="source:INTACT918F_F377_scaffold_6-int 4911 5330" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 11437050..11437843 /note="source:INTACT918F_F377_scaffold_6-int 11687 12481" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 11438256..11438572 /note="source:INTACT918F_F377_scaffold_6-int 10522 10838" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 11441912..11442453 /note="source:INTACT918F_F377_scaffold_6-int 377 919" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 11448325..11448734 /note="source:INTACT918F_F377_scaffold_6-int 1564 1973" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 11453693..11454313 /note="source:INTACT918F_F377_scaffold_6-int 6297 6916" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 11455265..11456466 /note="source:INTACT918F_F377_scaffold_6-int 3406 4599" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 11456791..11457451 /note="source:INTACT918F_F377_scaffold_6-int 13842 14502" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 11459375..11459618 /note="source:INTACT918F_F377_scaffold_6-int 15539 15782" /mobile_element_type="retrotransposon:LTR/Unclassified" assembly_gap 11459619..11469618 /estimated_length=10000 /gap_type="between scaffolds" mobile_element 11471739..11473233 /note="source:INTACT918F_F377_scaffold_6-int 2416 3910" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 11473668..11474446 /note="source:INTACT918F_F377_scaffold_6-int 351 1132" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 11497002..11497647 /note="source:INTACT918F_F377_scaffold_6-int 6339 6995" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 11507703..11508803 /note="source:INTACT918F_F377_scaffold_6-int 197 1300" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 11510199..11510656 /note="source:INTACT918F_F377_scaffold_6-int 4084 4542" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 11510897..11511832 /note="source:INTACT918F_F377_scaffold_6-int 1679 2612" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 11517393..11517687 /note="source:INTACT918F_F377_scaffold_6-int 6728 7028" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 11520996..11535155 /locus_tag="TCM_028138" /note="dbxref CacaoGD:Thecc1EG028138" mRNA join(11520996..11521038,11525198..11525917, 11526002..11526175,11526650..11527467,11527971..11528295, 11528634..11528764,11528975..11529300,11532028..11532486, 11532890..11533356,11534912..11535155) /locus_tag="TCM_028138" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400030535.3" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" mobile_element complement(11525488..11525704) /note="source:INTACT7724F_F100_scaffold_143-int 4817 5032" /mobile_element_type="retrotransposon:LTR/Unclassified" CDS join(11525725..11525917,11526002..11526175, 11526650..11527467,11527971..11528295,11528634..11528764, 11528975..11529300,11532028..11532486,11532890..11533049) /locus_tag="TCM_028138" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26462.1" /translation="MQNALNQHEFPSLPTIHGLTSGRPPDLPQQPSAAFQPPPVAIPC LSVTNPPLSWTTQPQQLHSNGEKPPVVPLTRDPLVYKDRPAASFFEDEIHILAQPFKM SLVGKFSRMPKLQEIRSAFKGHKEVNCIVLGNKNKLHGLGKPQPHSVVDADKLKNLEK IKNPEKEKIVSTEKPANHHQKWQPVGKVGTSGTKDRQGKEIASDNGPKEANVPISNRF HGISGHGDEVQNRVMESSLHKKNDGAIPVHVGEYGQREQLNKFTSGRKESTTPVKVPQ NENNTQPPIGKPQKDTVVENRDVTDAQRKGADGQHGEEEQPAGDRTVTARAAKPSSAK DVELDFFHVHGMHGKTETRGERGLTVAKTGKVVMVTAESSSDKGPDTETRNGSSVMGR AEKHEECPRMTEMESVSQVRPAVIEGQKQIPTWEMTEFGQRVTVRKQKLKKKAKPVLA SLVHVMNVDDERNSLDIYPTADGQKSERERQLLNEEPTDTKGSSSSNTLRSLPGVEVQ RRLKKLKMMHKIKLMVILEPMVHKRRAEYFRRKLGSDKVGPWMVGGDFNSIVSIVERL NGATPHVGSMEDFASTLFDCGLLDAGFEGNSYTWTNNHMFQRLDRVVYNPEWTQCFSS TRVQHLNRDGLDHCPLLISRNTASQKGPSTFRHSGLYPDRVIWRIMKLCRQLYDGSLL QQWQWKGDTDIAAMLGLSFPPKQHAPPQIIYWKKPSIGEYKLNVDGSSRNGLHAASGG VLRDHTGKLIFGFSENIGPCNSLQAELHALLRGFLLCKERHIEKLWIEMDALVAIQLI QPSKKGSHDISKKYPSSSSIKSYARKMDFLTLGTFTTQSQAHVTWRYGICPPPLYPFI VINKI" mobile_element 11535926..11536408 /note="source:CACAO_M_E86361_F7_scaffold_15 6290 6804" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11536385..11537995) /note="source:CACAO_M_E33213_F12_scaffold_4 8315 9976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11538483..11538622 /note="source:scaffold_3_CACTA_0382 11738 11876" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11545058..11545361) /note="source:scaffold_9_CACTA_0934 646 954" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11545352..11546185) /note="source:scaffold_9_CACTA_0934 114 954" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11546179..11546281) /note="source:scaffold_4_CACTA_0492 15583 15684" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11548053..11548168) /note="source:INTACT405F_F91_scaffold_4-int 7319 7434" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11549625..11552253 /note="source:CACAO_M_E5550_F369_scaffold_2 1 2637" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 11552633..11559598 /locus_tag="TCM_028139" /note="dbxref CacaoGD:Thecc1EG028139" mRNA join(11552633..11552870,11554395..11554518, 11555975..11556055,11557362..11557480,11558598..11559598) /locus_tag="TCM_028139" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035939t1" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS join(11552794..11552870,11554395..11554518, 11555975..11556055,11557362..11557480,11558598..11558628) /locus_tag="TCM_028139" /note="paralog of Thecc1EG035939t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26463.1" /translation="MSANIVETPMTYVGSGAARLSDVITCTNLVKLLILYCVKVVSPP IKARKLHPRTSRQSASKVCILDILTFLAISVYRDTAAVVTGSRGVPGRDKATSDIHGC DHLISPMSANIVETAMAVGSDGAELSNVITWKCKRRKIGRN" mobile_element complement(11553020..11553632) /note="source:scaffold_8_CACTA_0858 13102 13715" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11555370..11556096 /note="source:CACAO_M_E44766_F33_scaffold_6 2025 2921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11558343..11558458) /note="source:INTACT405F_F91_scaffold_4-int 7319 7434" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11560137..11560326) /note="source:scaffold_9_CACTA_0934 1096 1284" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11563288..11563499) /note="source:scaffold_9_CACTA_0934 893 1101" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11569643..11570038) /note="source:scaffold_9_CACTA_0934 893 1284" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11570293..11573220 /note="source:CACAO_M_E46980_F80_scaffold_6 1 2928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11575574..11578554 /note="source:CACAO_M_E47740_F12_scaffold_6 11612 14584" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11579886..11582052) /note="source:CACAO_M_S_E99244_F4_scaffold_9 9268 11440" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11589731..11590417 /note="source:CACAO_M_S_E89272_F5_scaffold_8 17345 18034" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11590418..11591168) /note="source:INTACT713_F309_scaffold_9-int 2778 3565" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11591169..11594093 /note="source:CACAO_M_S_E15173_F4_scaffold_2 5863 8816" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11594079..11594203 /note="source:CACAO_M_S_E64654_F231_scaffold_5 1589 1711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11594093..11594719) /note="source:scaffold_5_CACTA_0596 2348 2957" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11594721..11595340) /note="source:scaffold_5_CACTA_0596 1096 1715" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11595301..11595362 /note="source:INTACT224_F176_scaffold_8-int 13863 13925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11595333..11596267) /note="source:INTACT12_F107_scaffold_9-int 7080 8023" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11596267..11598808) /note="source:INTACT713_F309_scaffold_9-int 1028 3567" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(11596331..11639381) /locus_tag="TCM_028142" /note="dbxref CacaoGD:Thecc1EG028142" mRNA complement(join(11596331..11596355,11608444..11608816, 11609232..11609516,11639278..11639381)) /locus_tag="TCM_028142" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028145t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" mobile_element complement(11599961..11602800) /note="source:CACAO_M_E3248_F5_scaffold_1 1644 4497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11606790..11607720) /note="source:INTACT713_F309_scaffold_9-int 2637 3565" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11607495..11608306) /note="source:scaffold_5_CACTA_0596 2201 3057" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(11608635..11608816,11609232..11609481)) /locus_tag="TCM_028142" /note="paralog of Thecc1EG028145t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26464.1" /translation="MQEIGSFEACLSSNVNDQSSPPNSGTGTRDKASTMAENSDGTGG NEAMNNVADKNSKNISIKLPTRVAMSQHGDGHQLEHVGVEIEVHPLVRRKRHSDTKIS IDKIFSLTSDKAVDIRENDEASDEDSISVNFAASWECERYF" mobile_element complement(11609831..11610883) /note="source:INTACT713_F309_scaffold_9-int 1019 2090" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11610874..11612797 /note="source:INTACT414_F210_scaffold_5-int 2290 4226" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11612796..11614892) /note="source:CACAO_M_E14113_F106_scaffold_3 10686 12778" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11614890..11616467) /note="source:INTACT1373F_F385_scaffold_8-int 17838 19179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11616435..11617433) /note="source:CACAO_M_S_E64832_F14_scaffold_5 11703 12680" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11619022..11620965 /note="source:INTACT695_F301_scaffold_5-int 4979 6937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11620957..11622791 /note="source:INTACT570_F260_scaffold_5-int 8568 10425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11622892..11623962 /note="source:INTACT570_F260_scaffold_5-int 1907 2969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11623961..11624065) /note="source:scaffold_5_CACTA_0596 11150 11253" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11626096..11628549) /note="source:INTACT713_F309_scaffold_9-int 1027 3565" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11628909..11629062 /note="source:CACAO_M_E42395_F3_scaffold_5 4509 4666" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11628930..11631258) /note="source:CACAO_M_S_E64832_F14_scaffold_5 1932 4310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11633987..11636573 /note="source:CACAO_M_S_E81597_F231_scaffold_6 1 2587" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11637602..11638655) /note="source:INTACT1625F_F66_scaffold_10-int 813 1863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11637899..11639614 /note="source:CACAO_M_E5870_F358_scaffold_2 320 2041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11639697..11641059) /note="source:CACAO_M_S_E1490_F231_scaffold_1 883 2664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11641060..11643328 /note="source:CACAO_M_S_E123918_F7_scaffold_10 1 2290" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11643325..11643945 /note="source:INTACT423_F7_scaffold_6-int 2378 2998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11643943..11645224) /note="source:CACAO_M_S_E1490_F231_scaffold_1 1 1313" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11654289..11655861 /note="source:INTACT518_F239_scaffold_2-int 6890 8542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11655508..11656807) /note="source:CACAO_M_S_E5046_F335_scaffold_1 18264 19559" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11658328..11658407 /note="source:INTACT280_F60_scaffold_5-int 10335 10417" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11663684..11663941) /note="source:scaffold_9_CACTA_0930 4 267" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11665801..11666524 /note="source:CACAO_M_E5627_F4_scaffold_2 3755 4477" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11666517..11667974 /note="source:CACAO_M_S_E31635_F14_scaffold_3 15781 17227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11669850..11670044 /note="source:INTACT280_F60_scaffold_5-int 10534 10739" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11675863..11678778 /note="source:CACAO_M_E44883_F245_scaffold_6 1 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11679066..11679161 /note="source:INTACT280_F60_scaffold_5-int 10052 10143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11682477..11687404) /note="source:CACAO_M_E14113_F106_scaffold_3 15873 20801" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11687405..11692136 /note="source:CACAO_M_E4200_F33_scaffold_2 1 4718" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11692130..11693494 /note="source:INTACT407F_F356_scaffold_4-int 11717 13078" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11693495..11693964) /note="source:scaffold_2_CACTA_0259 334 801" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11693950..11699845) /note="source:scaffold_2_CACTA_0259 1 5884" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11695920..11701707 /note="source:CACAO_M_S_E5046_F335_scaffold_1 15146 20864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11701629..11701716) /note="source:CACAO_M_S_E15347_F33_scaffold_2 5800 5886" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11701710..11704146 /note="source:INTACT407F_F356_scaffold_4-int 13076 15551" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11707287..11708207 /note="source:CACAO_M_E47321_F141_scaffold_6 1 921" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11708611..11713311 /note="source:CACAO_M_E47321_F141_scaffold_6 922 5622" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11719205..11720297 /note="source:scaffold_9_CACTA_0931 15826 16903" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11719225..11720773 /note="source:CACAO_M_E86305_F7_scaffold_15 6225 7860" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11720805..11721527) /note="source:CACAO_M_S_E50960_F369_scaffold_4 1 723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11727155..11727335 /note="source:scaffold_3_CACTA_0382 10027 10205" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11727426..11727484) /note="source:scaffold_8_CACTA_0859 17415 17472" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11728236..11728703) /note="source:CACAO_M_E5899_F5_scaffold_2 20489 20961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11729589..11729880 /note="source:CACAO_M_E5899_F5_scaffold_2 20042 20333" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11730457..11730677 /note="source:INTACT39F_F22_scaffold_1-int 3242 3461" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11730682..11731518 /note="source:CACAO_M_S_E64023_F13_scaffold_5 5906 6732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11731621..11733299) /note="source:INTACT1327F_F381_scaffold_8-int 6620 8302" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11738039..11738219 /note="source:scaffold_3_CACTA_0382 10027 10205" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11740401..11740692 /note="source:CACAO_M_E5899_F5_scaffold_2 20042 20333" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11741269..11741489 /note="source:INTACT39F_F22_scaffold_1-int 3242 3461" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11741497..11746107) /note="source:INTACT1327F_F381_scaffold_8-int 4552 9161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11743306..11747110 /note="source:INTACT95_F143_scaffold_9-int 1684 5437" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11750035..11755453 /note="source:CACAO_M_E36294_F51_scaffold_5 7295 11505" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 11752097..11756011 /locus_tag="TCM_028160" /note="dbxref CacaoGD:Thecc1EG028160" mRNA join(11752097..11752281,11752440..11752888, 11753030..11753145,11753365..11753581,11753810..11754104, 11754285..11756011) /locus_tag="TCM_028160" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003464t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage" CDS join(11752114..11752281,11752440..11752888, 11753030..11753145,11753365..11753581,11753810..11754104, 11754285..11755118) /locus_tag="TCM_028160" /note="paralog of Thecc1EG003464t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26465.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BRB4" /translation="MTFASFFDRNLSPLEEEIVVHTPLEEQLVRNTCYRDCGIRVGKK EFRGDLIPLAIRKGYSAYLAHVIDTSKEEPKLKDVSIVIEFSDVFLDELLGLLPDRKL EFSIDLLSGTAPISIISYRMAPAELRKLKVQLQDLINKGFIRPSTSPWGAPVLFVKKK DGILWLCIDYRQLNGVTIKNKYPLPRIDDLFYHLQGAMVFSKIDLRVFNSYLEKFVIV FIDDILVYSKDDDEHAVHLRIVLQTLLTPLTRLTRKGVKFEWDDVCGSRFQELKNQLT STPVLTLPVNGKEFVVYSDTSKLGLGCLLMQDEKVVAYASWKANVVGDALSRKSLSSL ASLQNSYIPMLLEMKSLGIQLSNSEDGTVLASFVVRPLLLKQIKELQKYDDELKWEVQ KLRDGETNEFRLGDDGILMLGDRIKAEQQKPLGTLQPLPIPKWKWEHVTVDFVLGLPW TQSGKDAIRVIVDRLTTSAHFFAIHSTCSIEKLAKLYIDEIVRLHGVPVSIVSDRDPR FTSRFLLKFQEAFGTNLRFSTTFHPQIDGQFERTIQTLDNMLQACVIDFIGSWDRHLP LVEFAYNNSFQSSIGMAPYEALYGRKCRTPICWDEVGDRKLFNVESIDLTNDKIKVIR ERLKTDQDKQKSYFDRRRKNLEFKVDDRVFLKVFPWKGMIRFAKRESSIRDTLDCFIS LKALGQWHID" mobile_element complement(11755454..11758637) /note="source:INTACT1327F_F381_scaffold_8-int 6069 9257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11759373..11759604) /note="source:scaffold_3_CACTA_0382 12028 12248" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11759605..11762591 /note="source:CACAO_M_E47389_F15_scaffold_6 1 2982" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11763192..11764303) /note="source:scaffold_5_CACTA_0591 7871 9009" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11765057..11765151 /note="source:CACAO_M_E1841_F5_scaffold_1 3081 3175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11765078..11765167 /note="source:scaffold_4_CACTA_0493 2831 2925" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11765201..11767397 /note="source:CACAO_M_E1841_F5_scaffold_1 24470 25802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11767315..11767432) /note="source:CACAO_M_E49857_F85_scaffold_7 20649 20766" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11767422..11770043) /note="source:CACAO_M_S_E5046_F335_scaffold_1 15308 18135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11770228..11770642 /note="source:CACAO_M_E9677_F7_scaffold_2 4747 5160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11771107..11771503) /note="source:CACAO_M_S_E5046_F335_scaffold_1 3608 4004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11774192..11774242 /note="source:CACAO_M_E35511_F5_scaffold_5 13614 13662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11774267..11774934 /note="source:CACAO_M_E1841_F5_scaffold_1 19381 20047" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11774937..11776124) /note="source:CACAO_M_E1841_F5_scaffold_1 9632 10813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11776122..11776405 /note="source:CACAO_M_E1841_F5_scaffold_1 9076 9378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11776405..11776900) /note="source:CACAO_M_E58324_F9_scaffold_9 7668 8162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11778257..11778808 /note="source:CACAO_M_E35511_F5_scaffold_5 2256 2810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11778858..11779334 /note="source:scaffold_4_CACTA_0493 3856 4230" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11779165..11782503 /note="source:CACAO_M_E35511_F5_scaffold_5 3062 6363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11782507..11782812 /note="source:CACAO_M_E35511_F5_scaffold_5 6982 7287" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11783514..11785127 /note="source:scaffold_4_CACTA_0493 3619 5255" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11785354..11786819 /note="source:CACAO_M_E35511_F5_scaffold_5 7283 8742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11786815..11787500 /note="source:CACAO_M_E35511_F5_scaffold_5 10600 11286" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11787501..11798035 /note="source:CACAO_M_S_E82154_F15_scaffold_6 1 10535" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11798036..11798814 /note="source:CACAO_M_E35511_F5_scaffold_5 2260 2810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11798859..11800382 /note="source:CACAO_M_E35511_F5_scaffold_5 12182 13655" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11800344..11800388 /note="source:scaffold_4_CACTA_0493 1588 1632" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11800813..11800855) /note="source:CACAO_M_E1841_F5_scaffold_1 15794 15836" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11800864..11800962) /note="source:CACAO_M_E1841_F5_scaffold_1 15785 15874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11804658..11807608 /note="source:CACAO_M_S_E5046_F335_scaffold_1 15146 18135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11808198..11810750 /note="source:CACAO_M_E47412_F344_scaffold_6 1 2553" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11811933..11812323 /note="source:scaffold_4_CACTA_0493 3654 4075" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11812303..11812940) /note="source:CACAO_M_E1841_F5_scaffold_1 16015 16662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11813342..11813488) /note="source:INTACT280_F60_scaffold_5-int 10399 10550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11815203..11815632 /note="source:scaffold_4_CACTA_0493 3973 4440" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11816602..11816667) /note="source:INTACT280_F60_scaffold_5-int 834 901" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11816667..11818215) /note="source:scaffold_4_CACTA_0493 69 1625" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11818668..11820979) /note="source:INTACT217_F173_scaffold_6-int 8697 10985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11819353..11820981) /note="source:INTACT446_F218_scaffold_9-int 4643 6270" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(11820977..11823725) /note="source:INTACT446_F218_scaffold_9-int 3646 6373" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 11823727..11824140 /note="source:CACAO_M_E33213_F12_scaffold_4 10268 10701" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11824142..11824276 /note="source:CACAO_M_S_E7818_F60_scaffold_2 876 1010" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11824280..11825060 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11825488..11825805 /note="source:CACAO_M_S_E7818_F60_scaffold_2 19285 19578" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11825895..11826947 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6002 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11827263..11827331) /note="source:INTACT410F_F357_scaffold_4-int 10004 10072" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11827302..11827469 /note="source:CACAO_M_S_E15173_F4_scaffold_2 1166 1333" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11827464..11830801 /note="source:CACAO_M_E47430_F82_scaffold_6 1 3338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11830802..11830849) /note="source:INTACT160_F4_scaffold_7-int 16764 16811" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11830850..11831952 /note="source:CACAO_M_E5326_F22_scaffold_2 19817 20964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11831026..11832215 /note="source:scaffold_2_CACTA_0263 2215 3371" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11833825..11834034) /note="source:CACAO_M_E71405_F316_scaffold_10 4799 5018" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11834031..11834544 /note="source:CACAO_M_S_E7818_F60_scaffold_2 1203 1714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11834981..11846306 /note="source:CACAO_M_E65050_F7_scaffold_9 3 16229" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11846937..11847372) /note="source:INTACT224_F176_scaffold_8-int 16309 16733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11848329..11851328) /note="source:CACAO_M_E14839_F7_scaffold_3 1 2989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11851329..11851443 /note="source:INTACT410F_F357_scaffold_4-int 4221 4334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11854934..11854967 /note="source:scaffold_2_CACTA_0263 1789 1823" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11859269..11859303 /note="source:scaffold_2_CACTA_0263 1789 1823" /mobile_element_type="transposon:TIR/CACTA" gene 11861078..11870695 /locus_tag="TCM_028172" /note="dbxref CacaoGD:Thecc1EG028172" mRNA join(11861078..11861263,11861679..11861733, 11862359..11862682,11870494..11870695) /locus_tag="TCM_028172" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS join(11861132..11861263,11861679..11861733, 11862359..11862561) /locus_tag="TCM_028172" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26466.1" /translation="MVMGSSGMEFPDVITWKWVPEFLFTITYSIVAFLWVFKHVFFRM INNQLKYIAQHIETCCNVDTPRETDERLRVFILRGQGCPRTKKRRSSRHLSKGSSSDR SSASTDSFEAGGPTLESATLDELAAGL" mobile_element 11868077..11868111 /note="source:scaffold_2_CACTA_0263 1789 1823" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11872568..11873039 /note="source:CACAO_M_E4676_F9_scaffold_2 3 472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11873041..11873196 /note="source:scaffold_5_CACTA_0599 8802 8955" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11873212..11873580 /note="source:scaffold_2_CACTA_0263 1633 2001" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11873576..11873697 /note="source:scaffold_2_CACTA_0263 4629 4751" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11873702..11878115 /note="source:INTACT160_F4_scaffold_7-int 8380 12792" /mobile_element_type="retrotransposon:LTR/Copia" gene 11874038..11876258 /locus_tag="TCM_028175" /note="dbxref CacaoGD:Thecc1EG028175" mRNA join(11874038..11874131,11875112..11876258) /locus_tag="TCM_028175" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009564t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400029923" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage" CDS 11875260..11875979 /locus_tag="TCM_028175" /note="paralog of Thecc1EG009564t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26467.1" /db_xref="Phytozome:PGSC0003DMP400029923" /translation="MPLYRMAPVELKELREQLQDLINKGFICLSVSPWGVPMLFVKKK DGSLRPCIDYRQLNNIRIKNKYPLPRIDDLFDQLQEAQCFSKLDLMSRYHQLRIREED IPKTAFRTRYGHYEFLVMSFGLTNAPTAFMDLMNRVLWAYLDRFVVIFIDDILVYSRS WEKHTQHLRIRLQTLREHRLYMKFSKCVFWLSSVGFLGHIVSKDGVQVDPSKVEAIEN WARPTIVTEISSFLRLAGYYQ" mobile_element 11878107..11878262 /note="source:scaffold_5_CACTA_0599 8802 8955" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11878278..11878646 /note="source:scaffold_2_CACTA_0263 1633 2001" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11879476..11879920 /note="source:CACAO_M_E84908_F12_scaffold_10 2988 3429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11879832..11880203) /note="source:CACAO_M_E43348_F5_scaffold_5 4621 4990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11881083..11882054 /note="source:INTACT26_F13_scaffold_9-int 2884 3850" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11882457..11883171 /note="source:INTACT160_F4_scaffold_7-int 12851 13566" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11883161..11883172) /note="source:CACAO_M_S_E64832_F14_scaffold_5 1208 1219" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11883173..11895846 /note="source:INTACT127_F12_scaffold_6-int 1 12674" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11895847..11896412 /note="source:INTACT135F_F90_scaffold_2-int 13409 14003" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11898704..11899042) /note="source:INTACT73_F14_scaffold_4-int 877 1209" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11898751..11899106 /note="source:INTACT292_F22_scaffold_5-int 8675 8987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11899074..11900481) /note="source:scaffold_6_CACTA_0710 12668 14075" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11900445..11900510) /note="source:INTACT263_F12_scaffold_6-int 7123 7186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11902419..11902688) /note="source:scaffold_4_CACTA_0492 3522 3830" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11903428..11906039 /note="source:CACAO_M_E33282_F13_scaffold_4 6440 9081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11907020..11908580 /note="source:CACAO_M_S_E72367_F245_scaffold_6 1 1560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11908581..11911179 /note="source:CACAO_M_S_E82353_F231_scaffold_6 1 2599" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11911181..11918052) /note="source:INTACT546_F245_scaffold_7-int 1412 8076" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11918053..11918593) /note="source:CACAO_M_E84824_F245_scaffold_10 1356 1897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11918594..11921679) /note="source:CACAO_M_E69295_F141_scaffold_9 1 3088" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11921680..11929964 /note="source:CACAO_M_E50029_F245_scaffold_7 1579 9869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11929965..11930003 /note="source:INTACT293_F14_scaffold_5-int 11413 11450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11942699..11943589) /note="source:INTACT120_F22_scaffold_3-int 8696 9654" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11943590..11943824) /note="source:CACAO_M_S_E1983_F7_scaffold_1 2784 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11943793..11946463) /note="source:CACAO_M_S_E119694_F7_scaffold_9 3 2673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11946466..11946643) /note="source:INTACT120_F22_scaffold_3-int 8525 8700" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11946644..11949592) /note="source:INTACT476_F7_scaffold_4-int 6920 9874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11949592..11951410 /note="source:INTACT506_F233_scaffold_3-int 1117 3006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11951379..11953580 /note="source:CACAO_M_S_E85473_F233_scaffold_7 3235 5422" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11953579..11956023) /note="source:INTACT127_F12_scaffold_6-int 8679 11178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11956032..11958651 /note="source:INTACT506_F233_scaffold_3-int 5475 8103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11958646..11959921) /note="source:CACAO_M_S_E14932_F233_scaffold_2 606 1888" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11959910..11960467 /note="source:INTACT506_F233_scaffold_3-int 2267 2813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11962333..11962375 /note="source:CACAO_M_E3248_F5_scaffold_1 6070 6115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11962370..11962978 /note="source:CACAO_M_E33282_F13_scaffold_4 10327 10937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11962984..11963245 /note="source:CACAO_M_E65323_F12_scaffold_9 8456 8696" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11963225..11964219 /note="source:CACAO_M_E3248_F5_scaffold_1 2654 3580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11964171..11964226) /note="source:INTACT170_F12_scaffold_5-int 1961 2017" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11964204..11966654 /note="source:CACAO_M_E65323_F12_scaffold_9 7283 9516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11966246..11966682 /note="source:INTACT563_F255_scaffold_10-int 2609 3117" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11966683..11967347 /note="source:CACAO_M_E65323_F12_scaffold_9 10078 10741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11967319..11967528) /note="source:scaffold_1_CACTA_0011 7127 7388" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11967404..11967526) /note="source:INTACT170_F12_scaffold_5-int 1766 1893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11967527..11983295 /note="source:CACAO_M_E47740_F12_scaffold_6 1 15769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11983296..11983583 /note="source:CACAO_M_E33282_F13_scaffold_4 11895 12181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11983296..11983338) /note="source:CACAO_M_S_E4266_F12_scaffold_1 8935 8973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11983584..11986323 /note="source:CACAO_M_E23769_F96_scaffold_4 1 2756" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11986324..11986675) /note="source:CACAO_M_E13604_F90_scaffold_3 8599 8951" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11989201..11991739 /note="source:INTACT212F_F351_scaffold_3-int 2388 4911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11991739..11991978 /note="source:CACAO_M_S_E14932_F233_scaffold_2 2417 2658" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11995153..11995561 /note="source:INTACT170_F12_scaffold_5-int 1177 1585" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11996073..11996797 /note="source:scaffold_2_CACTA_0262 5409 6148" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11996716..11997188) /note="source:CACAO_M_S_E82353_F231_scaffold_6 1213 1687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11997165..11999287) /note="source:CACAO_Mariner_E180_scaffold_6 6245 8289" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(12000488..12002660) /note="source:CACAO_M_S_E144055_F7_scaffold_10 809 2983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12002654..12003915 /note="source:CACAO_M_E9677_F7_scaffold_2 7190 8440" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12003904..12004598) /note="source:INTACT302_F7_scaffold_7-int 3341 4055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12004585..12004659 /note="source:CACAO_M_E48750_F369_scaffold_6 2486 2556" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12004599..12004901) /note="source:INTACT18_F7_scaffold_4-int 1 303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12009338..12012030 /note="source:CACAO_M_S_E82353_F231_scaffold_6 1 2599" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12011948..12012041) /note="source:INTACT598_F89_scaffold_2-int 9601 9694" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12012032..12012277) /note="source:scaffold_2_CACTA_0262 8311 8556" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12013797..12014351 /note="source:CACAO_M_S_E101631_F270_scaffold_9 2442 2987" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12016010..12017213) /note="source:CACAO_M_S_E123918_F7_scaffold_10 1777 2984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12017194..12019414) /note="source:CACAO_M_E33787_F13_scaffold_4 8231 10454" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12019412..12026871 /note="source:CACAO_M_S_E64440_F7_scaffold_5 4697 16728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12026854..12028162) /note="source:CACAO_M_S_E15593_F7_scaffold_2 1 1328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12030671..12030737 /note="source:CACAO_M_S_E101631_F270_scaffold_9 379 445" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12030748..12032759 /note="source:CACAO_M_S_E101631_F270_scaffold_9 881 2982" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12032684..12032779) /note="source:CACAO_M_S_E101631_F270_scaffold_9 8100 8195" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12032931..12033242) /note="source:INTACT506_F233_scaffold_3-int 9789 10104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12033242..12034790 /note="source:scaffold_2_CACTA_0261 1779 3282" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12034149..12035517 /note="source:CACAO_M_E58601_F7_scaffold_9 4314 5686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12036476..12037583 /note="source:CACAO_M_S_E101631_F270_scaffold_9 423 1531" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12037999..12040796) /note="source:CACAO_M_S_E1323_F233_scaffold_1 3 2844" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12044611..12045956) /note="source:CACAO_M_S_E101631_F270_scaffold_9 18545 19859" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12046178..12046960 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5120 5890" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12046238..12047051) /note="source:CACAO_M_E58601_F7_scaffold_9 10054 10875" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12047008..12048295 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5810 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12048816..12055960 /note="source:CACAO_M_E48588_F7_scaffold_6 1 7114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12055957..12058838 /note="source:CACAO_M_E45586_F7_scaffold_6 111 2996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12058839..12064463 /note="source:INTACT224_F176_scaffold_8-int 6644 12244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12063867..12064948) /note="source:CACAO_M_E58601_F7_scaffold_9 9848 10875" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12064718..12065937 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5879 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12067294..12069502) /note="source:CACAO_M_S_E102025_F12_scaffold_9 7950 10156" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12069490..12070552) /note="source:CACAO_M_E84908_F12_scaffold_10 10591 11653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12070524..12073724) /note="source:CACAO_M_S_E64023_F13_scaffold_5 5813 9020" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12073726..12075823) /note="source:INTACT1443F_F12_scaffold_9-int 2895 4992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12075824..12078926) /note="source:INTACT135F_F90_scaffold_2-int 5634 8734" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12076249..12079004) /note="source:CACAO_M_E50676_F86_scaffold_7 6144 8893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12079014..12079116 /note="source:INTACT715_F7_scaffold_5-int 4124 4226" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(12079024..12081420) /locus_tag="TCM_028185" /note="dbxref CacaoGD:Thecc1EG028185" mRNA complement(join(12079024..12079763,12079982..12080512, 12080636..12080891,12081132..12081420)) /locus_tag="TCM_028185" /product="Gag protease polyprotein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023764t1" /inference="similar to AA sequence:frave:gene10925" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element complement(12079105..12079339) /note="source:INTACT363_F7_scaffold_9-int 4711 5055" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(12079312..12079763,12079982..12080512, 12080636..12080885)) /locus_tag="TCM_028185" /note="dbxref frave:gene10925; paralog of Thecc1EG023764t1" /codon_start=1 /product="Gag protease polyprotein, putative" /protein_id="EOY26468.1" /translation="MLPRHGHPPLTRSARRGRGRPRQNRPDLMEEESAASTIRAAPAV EQPESLPHPPPPTSTPAMPPEMVQALAAFLTAMAGQAQADATKAKDWINQLSKTLSDM RLDDDMKLMAATRLLENRARTWWSLVKSRYTTPLTWSDFIKEFDSQYFTYFHQREKKR EFLSLKQGNLTVEEYETRFNELILYVPDLVKLEQDQANYFEEGLHNEIEERMTVIGRE PHKEVVQMPLRAEKLANENRRIRAEIVKRINPGGFSNQPPKRGHCRSDCPQLGRATIA ISSPPARTNVQRKDSTKVQLRPGVTIRSDVESNAPTYPPPRPQTRILTRVFAVAKEEA QVQPGAVTGTTILIDKDAYALIDFDLDRFYVSITFASFTSRNLSPLEEENVVHTHSGE KLIRNSCYRDYGVDMTVE" mobile_element complement(12082305..12082316) /note="source:INTACT363_F7_scaffold_9-int 4460 4471" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12082317..12087293 /note="source:INTACT659_F289_scaffold_2-int 1 4929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12087288..12087756 /note="source:CACAO_M_S_E6687_F86_scaffold_2 8777 9224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12087757..12090558 /note="source:CACAO_M_S_E14847_F12_scaffold_2 10330 13203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12092918..12097578 /note="source:CACAO_M_E57457_F12_scaffold_9 1 4625" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12101726..12102143 /note="source:CACAO_M_S_E7818_F60_scaffold_2 19394 19810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12103799..12106512 /note="source:INTACT695_F301_scaffold_5-int 4904 7596" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12106617..12107449 /note="source:INTACT695_F301_scaffold_5-int 7621 8457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12107818..12108625 /note="source:CACAO_M_S_E7818_F60_scaffold_2 18491 19305" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12109037..12109427 /note="source:CACAO_M_S_E7818_F60_scaffold_2 19444 19819" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12117348..12117588) /note="source:INTACT118_F5_scaffold_9-int 7939 8178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12117692..12118270) /note="source:scaffold_6_CACTA_0711 1 580" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12119814..12120231 /note="source:CACAO_M_E58324_F9_scaffold_9 9812 10224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12120235..12120635) /note="source:CACAO_M_E70891_F369_scaffold_10 12765 13165" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12120736..12121043) /note="source:CACAO_M_E70891_F369_scaffold_10 12410 12717" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12123135..12123420) /note="source:INTACT170_F12_scaffold_5-int 5660 5946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12123370..12123428) /note="source:scaffold_2_CACTA_0262 17848 17909" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12130589..12131072 /note="source:CACAO_M_E58324_F9_scaffold_9 7666 8148" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12131173..12132583) /note="source:CACAO_M_E49110_F15_scaffold_6 1 1375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12132584..12134249) /note="source:CACAO_M_E22484_F328_scaffold_3 11522 13164" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(12135228..12137293) /locus_tag="TCM_028188" /note="dbxref CacaoGD:Thecc1EG028188" mRNA complement(join(12135228..12136524,12136638..12137293)) /locus_tag="TCM_028188" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038959t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.21 coverage" CDS complement(join(12136201..12136524,12136638..12136703)) /locus_tag="TCM_028188" /note="paralog of Thecc1EG038959t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26469.1" /translation="MTMMECTSRDCTHDDDVFICKCGGFCLRKRGIFTGALFLTTARL NFAATSSSRVVRVFTRFGSRCSEKVTIAFCCSEKLSICPTKFRCSEKPSVHFAILRVF AIFFYFIYTLVEYGLPTCLGIIYLSLE" mobile_element 12136965..12137712 /note="source:CACAO_M_E22186_F143_scaffold_3 8552 9255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12138991..12139087 /note="source:scaffold_2_CACTA_0262 14561 14659" /mobile_element_type="transposon:TIR/CACTA" gene complement(12140199..12140599) /locus_tag="TCM_028189" /note="dbxref CacaoGD:Thecc1EG028189" mRNA complement(12140199..12140599) /locus_tag="TCM_028189" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003754t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(12140344..12140568) /locus_tag="TCM_028189" /note="paralog of Thecc1EG003754t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26470.1" /translation="MSRSNGSQDTPYNTSKGSLSSTAKSQWRPDLGSQKSGQSRIPIG WIPNGLEIMFLSGESLESSESLESNDSTKI" mobile_element 12141186..12141324 /note="source:CACAO_M_E22186_F143_scaffold_3 3977 4111" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12142195..12150958 /note="source:CACAO_M_S_E82995_F85_scaffold_6 1 8343" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12151059..12151338 /note="source:CACAO_M_S_E82995_F85_scaffold_6 8344 8623" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12151825..12154888 /note="source:CACAO_M_S_E82995_F85_scaffold_6 8550 11262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12152947..12155537) /note="source:CACAO_M_E69295_F141_scaffold_9 81 2673" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12157772..12158200) /note="source:CACAO_M_E58324_F9_scaffold_9 9798 10224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12158227..12160000 /note="source:CACAO_M_E47954_F15_scaffold_6 1 1774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12160772..12161318 /note="source:CACAO_M_E47954_F15_scaffold_6 1775 2321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12161319..12161577) /note="source:CACAO_M_E58324_F9_scaffold_9 9491 9752" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12162349..12162780 /note="source:CACAO_M_E41756_F85_scaffold_5 5680 6096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12162420..12165440) /note="source:scaffold_6_CACTA_0711 3577 6601" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12168229..12168322) /note="source:CACAO_M_E5899_F5_scaffold_2 20477 20569" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12168365..12169424) /note="source:CACAO_M_E58324_F9_scaffold_9 7632 8812" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12169383..12169463 /note="source:scaffold_5_CACTA_0591 8493 8564" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12169463..12171973) /note="source:CACAO_M_E70891_F369_scaffold_10 14389 16160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12171973..12172147 /note="source:scaffold_5_CACTA_0591 8389 8568" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12176604..12177464 /note="source:scaffold_5_CACTA_0591 10059 10905" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12178018..12178378 /note="source:CACAO_M_E49857_F85_scaffold_7 20685 21045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12179366..12179445 /note="source:CACAO_M_E3626_F245_scaffold_1 2944 3024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12180119..12181221) /note="source:INTACT95_F143_scaffold_9-int 4802 5899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12181206..12185652) /note="source:CACAO_M_E48700_F15_scaffold_6 6136 10592" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12185667..12185708 /note="source:scaffold_5_CACTA_0591 4766 4807" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12185709..12194424 /note="source:CACAO_M_E33228_F15_scaffold_4 1 8680" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12194421..12195744 /note="source:CACAO_M_E12376_F15_scaffold_3 1 1324" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12195845..12207398 /note="source:INTACT1209F_F371_scaffold_6-int 1 11920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12205509..12207641) /note="source:CACAO_M_E1134_F15_scaffold_1 1 2134" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12207650..12208007 /note="source:scaffold_5_CACTA_0591 9033 9394" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12210663..12211067) /note="source:CACAO_M_E294_F134_scaffold_1 9679 10083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12213657..12213787) /note="source:scaffold_4_CACTA_0493 6638 6763" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12216789..12218499 /note="source:scaffold_5_CACTA_0591 7786 9523" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12219021..12219894) /note="source:CACAO_M_E9395_F12_scaffold_2 210 1079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12219766..12220437 /note="source:CACAO_M_E52239_F256_scaffold_7 676 1294" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12220428..12225456) /note="source:CACAO_M_E5899_F5_scaffold_2 1699 4561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12225457..12229516 /note="source:CACAO_M_S_E5046_F335_scaffold_1 1 4140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12226723..12233416) /note="source:scaffold_2_CACTA_0259 1 6693" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12229500..12235292 /note="source:CACAO_M_S_E5046_F335_scaffold_1 15135 22465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12235265..12235385) /note="source:INTACT116_F12_scaffold_7-int 6556 6676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12235394..12236447) /note="source:CACAO_M_E35811_F12_scaffold_5 19185 20235" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12236446..12236527) /note="source:CACAO_M_E47740_F12_scaffold_6 14505 14586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12236527..12239114) /note="source:CACAO_M_E69551_F193_scaffold_9 3401 5993" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12237449..12241084) /note="source:INTACT24F_F12_scaffold_1-int 6142 9748" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12245090..12245181) /note="source:CACAO_M_E47740_F12_scaffold_6 6636 6730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12245101..12245624) /note="source:INTACT563_F255_scaffold_10-int 2588 3117" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12245625..12245730 /note="source:CACAO_M_E5899_F5_scaffold_2 19652 20283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12245742..12246108 /note="source:CACAO_M_S_E99035_F335_scaffold_9 1029 1406" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12245787..12247206) /note="source:INTACT563_F255_scaffold_10-int 1144 2529" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12247896..12247994 /note="source:CACAO_M_E870_F22_scaffold_1 3578 3662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12247991..12248393) /note="source:CACAO_M_E65323_F12_scaffold_9 7737 8139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12248329..12248429 /note="source:INTACT120_F22_scaffold_3-int 9578 9667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12248388..12250786) /note="source:INTACT130_F12_scaffold_9-int 1 2407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12256404..12256881 /note="source:scaffold_8_CACTA_0859 494 989" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12256872..12257244 /note="source:scaffold_8_CACTA_0859 15467 15839" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12259710..12261149) /note="source:CACAO_M_E11098_F15_scaffold_2 14697 16142" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12263671..12264155) /note="source:CACAO_M_E26831_F12_scaffold_4 596 1080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12266713..12267146 /note="source:CACAO_M_E13038_F22_scaffold_3 13722 14150" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12267272..12268633 /note="source:INTACT518_F239_scaffold_2-int 2495 3857" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12268629..12269713) /note="source:CACAO_LINE_E_211_scaffold_8 6231 7311" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(12271250..12271616) /note="source:CACAO_M_E5899_F5_scaffold_2 8956 9320" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12271622..12271975 /note="source:INTACT518_F239_scaffold_2-int 6353 6705" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12272184..12279108 /note="source:CACAO_M_E33228_F15_scaffold_4 1 8291" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12279102..12279183 /note="source:CACAO_M_E13363_F273_scaffold_3 6332 6387" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12279925..12280397 /note="source:CACAO_M_E11662_F12_scaffold_2 7802 8282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12280456..12284856 /note="source:CACAO_M_E73087_F12_scaffold_10 466 4862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12282857..12290151) /note="source:CACAO_M_S_E7632_F12_scaffold_2 1 7295" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12290426..12290528) /note="source:CACAO_M_E43348_F5_scaffold_5 3687 3796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12291683..12291741) /note="source:CACAO_M_S_E4413_F3_scaffold_1 18331 18389" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12291739..12292133) /note="source:CACAO_M_S_E4413_F3_scaffold_1 225 629" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12292186..12294301) /note="source:CACAO_M_S_E4413_F3_scaffold_1 15042 17102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12295109..12296583) /note="source:CACAO_M_S_E84376_F22_scaffold_6 9255 10678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12296592..12297201 /note="source:CACAO_M_S_E31635_F14_scaffold_3 4097 4616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12297201..12297780) /note="source:CACAO_M_S_E4413_F3_scaffold_1 14474 15054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12297768..12298587) /note="source:CACAO_M_S_E4413_F3_scaffold_1 3517 4336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12298587..12299190 /note="source:CACAO_M_S_E119615_F3_scaffold_9 15760 16438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12300448..12300532 /note="source:INTACT83_F5_scaffold_9-int 12569 12652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12300533..12300743 /note="source:CACAO_M_S_E119615_F3_scaffold_9 16434 16653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12300747..12302344 /note="source:INTACT127_F12_scaffold_6-int 8679 10172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12302336..12303131 /note="source:CACAO_M_S_E99244_F4_scaffold_9 11138 11876" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12302615..12303132) /note="source:INTACT83_F5_scaffold_9-int 8900 9421" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12303154..12303564 /note="source:INTACT453_F4_scaffold_9-int 1450 1857" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12304088..12307098 /note="source:CACAO_M_S_E51722_F106_scaffold_4 1 3027" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12307099..12308811 /note="source:CACAO_M_S_E83262_F60_scaffold_6 1 1713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12308812..12314369) /note="source:INTACT8_F106_scaffold_3-int 1 5568" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12314392..12315001) /note="source:CACAO_M_E23991_F4_scaffold_4 14447 14783" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12316062..12316146) /note="source:CACAO_M_E33933_F9_scaffold_4 4999 5085" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12316275..12316846) /note="source:CACAO_M_E33933_F9_scaffold_4 2144 2746" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12318419..12319521) /note="source:CACAO_M_E12463_F12_scaffold_3 2758 4058" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12319798..12319944) /note="source:INTACT563_F255_scaffold_10-int 16753 16903" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12319939..12320088) /note="source:INTACT563_F255_scaffold_10-int 5990 6138" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(12320535..12323644) /locus_tag="TCM_028202" /note="dbxref CacaoGD:Thecc1EG028202" mRNA complement(join(12320535..12321432,12323459..12323644)) /locus_tag="TCM_028202" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009776t1" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.32 coverage" CDS complement(12321053..12321406) /locus_tag="TCM_028202" /note="paralog of Thecc1EG009776t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26471.1" /translation="MSRKDSSLDTPYSTSEGSLDSTDRSRYVSEGESVTSNSIRFLSG LGLPRGKPLFKSLRSLARLMRNEIYLRKKNTNKMGKKSISNYCLRKVSVSVVRHFPPG CGRGVALVSKEEFER" mobile_element complement(12322590..12323671) /note="source:CACAO_M_E12463_F12_scaffold_3 3066 4058" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12323591..12323694 /note="source:INTACT120_F22_scaffold_3-int 9563 9666" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12324346..12324780 /note="source:CACAO_M_S_E4534_F4_scaffold_1 2543 2974" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12324487..12324905) /note="source:INTACT280_F60_scaffold_5-int 13871 14307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12325104..12325377) /note="source:CACAO_M_E58324_F9_scaffold_9 23819 24073" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12327884..12330200) /note="source:CACAO_M_E13220_F12_scaffold_3 9806 12153" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12330208..12330913) /note="source:CACAO_M_E33933_F9_scaffold_4 23582 24285" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12330910..12331232) /note="source:CACAO_M_S_E4413_F3_scaffold_1 1085 1407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12331233..12331332) /note="source:CACAO_M_E3248_F5_scaffold_1 18740 18839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12331405..12332941 /note="source:CACAO_M_E52239_F256_scaffold_7 19813 21337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12332955..12334745 /note="source:CACAO_M_S_E98439_F7_scaffold_8 1146 2960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12334746..12335489 /note="source:CACAO_M_E52239_F256_scaffold_7 21676 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12335871..12335973) /note="source:CACAO_M_E23991_F4_scaffold_4 4983 5081" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12337060..12337123) /note="source:CACAO_M_E23991_F4_scaffold_4 15327 15390" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12337124..12339031) /note="source:CACAO_M_S_E68231_F4_scaffold_6 3 1861" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12341671..12342192) /note="source:CACAO_M_S_E99244_F4_scaffold_9 10444 10989" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12342193..12342411) /note="source:INTACT224_F176_scaffold_8-int 17437 18183" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12342574..12343201) /note="source:CACAO_M_S_E4591_F5_scaffold_1 17896 18519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12345226..12345526) /note="source:INTACT1373F_F385_scaffold_8-int 19054 19431" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12345878..12346518) /note="source:INTACT1373F_F385_scaffold_8-int 17884 18568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12346389..12346909 /note="source:INTACT904F_F49_scaffold_6-int 8826 9350" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12346912..12347285 /note="source:INTACT904F_F49_scaffold_6-int 9636 10002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12348594..12349327 /note="source:CACAO_M_E13783_F7_scaffold_3 1 734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12349382..12351758) /note="source:CACAO_M_S_E67659_F144_scaffold_6 1 2328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12351686..12351762 /note="source:CACAO_M_E24592_F195_scaffold_4 1255 1334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12351763..12354157) /note="source:CACAO_M_E53098_F7_scaffold_8 560 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12354154..12354350 /note="source:INTACT413_F209_scaffold_13-int 9408 9604" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12354657..12355371) /note="source:CACAO_M_E72867_F9_scaffold_10 1 718" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12356210..12356407 /note="source:CACAO_M_E14312_F12_scaffold_3 794 980" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12356528..12356580 /note="source:INTACT135F_F90_scaffold_2-int 1181 1235" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12360961..12361402 /note="source:CACAO_M_E5627_F4_scaffold_2 18332 18774" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12361403..12364387 /note="source:CACAO_M_E11328_F51_scaffold_2 1 2975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12364400..12365823 /note="source:CACAO_M_E5627_F4_scaffold_2 438 1858" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12367660..12368327 /note="source:INTACT224_F176_scaffold_8-int 4164 4829" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12368589..12369372) /note="source:INTACT695_F301_scaffold_5-int 2876 3621" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12369369..12370091) /note="source:INTACT695_F301_scaffold_5-int 1930 2636" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12370089..12370413 /note="source:CACAO_M_E42395_F3_scaffold_5 20271 20593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12370406..12370626 /note="source:CACAO_M_E42395_F3_scaffold_5 1553 1774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12372056..12373403) /note="source:CACAO_M_E24592_F195_scaffold_4 2552 3876" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12375764..12380027 /note="source:INTACT41F_F338_scaffold_1-int 3616 7875" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12380021..12380884) /note="source:CACAO_M_E49559_F88_scaffold_7 7772 8626" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12380914..12380955) /note="source:CACAO_M_E49559_F88_scaffold_7 7775 7816" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(12384640..12385544) /locus_tag="TCM_028206" /note="dbxref CacaoGD:Thecc1EG028206" mRNA complement(join(12384640..12385026,12385153..12385544)) /locus_tag="TCM_028206" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018884t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS complement(join(12384667..12385026,12385153..12385482)) /locus_tag="TCM_028206" /note="paralog of Thecc1EG018884t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26472.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BX03" /translation="MLQISDLSELEALFCFLDGLKPWARQMLQLSGVQDITTTMAAIK SLIEFRKGDVKKDAGKGKAKVLANAKPLSRGITSWQGSTWGIDQGNRMEDKGKRPLKC FLCDGPHLPSHSKGLMFANIKVVGKKLNALVDTGASNLFAFVETVKMLGLDTKARAAH IKTVNSNEIPTIGTASNMDVRLGEWVGKKTTEVIPLDDYDFVIGLDFVDRINAMIVPF SNYIVILDSRG" gene complement(12385870..12386414) /locus_tag="TCM_028207" /note="dbxref CacaoGD:Thecc1EG028207" mRNA complement(12385870..12386414) /locus_tag="TCM_028207" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038782t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS complement(12385911..12386240) /locus_tag="TCM_028207" /note="paralog of Thecc1EG038782t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26473.1" /translation="MTLGIRAAMENMRFEVETEGVASTPDTRETRSSRVMRKSISRDL FTMVETRLTHQEERVVELIDRCEESEAWMDGCKEQMAELREELQARLNETLEALTQLD ARREAEA" mobile_element 12389727..12399130 /note="source:CACAO_M_S_E83302_F86_scaffold_6 1 9404" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12399158..12400309) /note="source:CACAO_M_E49559_F88_scaffold_7 6494 7617" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12400310..12400321 /note="source:CACAO_M_E3248_F5_scaffold_1 17718 18837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12400756..12404300 /note="source:CACAO_M_E3801_F60_scaffold_1 1 3590" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12404293..12407613) /note="source:CACAO_M_E24389_F60_scaffold_4 2317 5648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12409104..12409339) /note="source:INTACT170_F12_scaffold_5-int 5676 5917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12409337..12412336 /note="source:INTACT163_F158_scaffold_5-int 7988 10932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12413370..12413449 /note="source:INTACT242_F12_scaffold_1-int 2974 3055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12413447..12415347 /note="source:INTACT163_F158_scaffold_5-int 7988 9884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12415343..12415408) /note="source:CACAO_M_E10859_F15_scaffold_2 751 813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12415397..12416033 /note="source:INTACT65_F13_scaffold_1-int 9160 9799" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12416036..12416669 /note="source:INTACT88_F12_scaffold_4-int 12460 13062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12416933..12419570 /note="source:CACAO_M_E45556_F245_scaffold_6 312 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12420397..12420500) /note="source:CACAO_M_S_E15657_F60_scaffold_2 2217 2320" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12420481..12420575 /note="source:scaffold_9_CACTA_0929 8776 8871" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12420499..12421758) /note="source:CACAO_M_E3248_F5_scaffold_1 17603 18839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12424333..12426520) /note="source:CACAO_M_S_E52921_F60_scaffold_5 3 2191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12427530..12429500) /note="source:INTACT242_F12_scaffold_1-int 2873 4551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12429499..12429642) /note="source:INTACT255_F60_scaffold_8-int 5022 5161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12430323..12431096) /note="source:INTACT563_F255_scaffold_10-int 43 773" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12430634..12431272 /note="source:INTACT170_F12_scaffold_5-int 6174 6822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12432965..12443511 /note="source:INTACT203_F15_scaffold_6-int 1 10547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12446058..12446410 /note="source:INTACT255_F60_scaffold_8-int 1 352" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12446411..12447197 /note="source:CACAO_M_E65323_F12_scaffold_9 7737 8505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12447197..12449822 /note="source:CACAO_M_E52239_F256_scaffold_7 3828 6440" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12449821..12451842 /note="source:CACAO_M_E65323_F12_scaffold_9 8500 9906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12451850..12454317) /note="source:INTACT180_F13_scaffold_3-int 10025 12547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12454318..12458670 /note="source:CACAO_M_S_E7632_F12_scaffold_2 3355 7700" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12456671..12461126) /note="source:CACAO_M_E73087_F12_scaffold_10 1 4464" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12461127..12461181) /note="source:CACAO_M_S_E7818_F60_scaffold_2 23673 23727" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12461178..12461362) /note="source:CACAO_M_S_E109853_F60_scaffold_9 19788 19979" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12469997..12470084) /note="source:CACAO_M_E73087_F12_scaffold_10 10576 10663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12470698..12470790) /note="source:CACAO_M_E70136_F322_scaffold_10 2001 2092" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12470718..12472494 /note="source:CACAO_M_S_E109853_F60_scaffold_9 4820 8179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12470761..12472118) /note="source:CACAO_M_E33282_F13_scaffold_4 7722 9078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12472589..12478222 /note="source:CACAO_M_S_E109853_F60_scaffold_9 6509 12162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12477901..12479578) /note="source:CACAO_M_E33282_F13_scaffold_4 7372 9078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12479590..12480356 /note="source:INTACT224_F176_scaffold_8-int 1539 2312" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12480217..12480392) /note="source:INTACT84_F12_scaffold_5-int 8680 8851" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12480905..12481023 /note="source:INTACT224_F176_scaffold_8-int 4152 4276" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12480920..12483526) /note="source:CACAO_M_E52239_F256_scaffold_7 3828 6438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12484708..12484908 /note="source:INTACT405F_F91_scaffold_4-int 7319 7515" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12486146..12488401) /note="source:INTACT453_F4_scaffold_9-int 16540 18803" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12488402..12492190 /note="source:INTACT1440F_F102_scaffold_9-int 1 3717" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12492187..12492888 /note="source:CACAO_M_E52012_F318_scaffold_7 6987 7688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12501879..12504536) /note="source:INTACT724_F4_scaffold_8-int 4179 6876" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12504537..12506252 /note="source:CACAO_M_E33213_F12_scaffold_4 1 1718" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12506245..12511170) /note="source:CACAO_M_S_E31774_F7_scaffold_3 873 7959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12511191..12512778) /note="source:INTACT265_F12_scaffold_7-int 6313 7873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12512769..12514352) /note="source:CACAO_M_E12756_F7_scaffold_3 1 1580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12514353..12515639 /note="source:CACAO_M_S_E4413_F3_scaffold_1 362 1669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12516038..12517083 /note="source:INTACT21_F9_scaffold_8-int 1 1041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12517081..12520050 /note="source:INTACT21_F9_scaffold_8-int 1512 4441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12520066..12520783) /note="source:CACAO_M_S_E5872_F9_scaffold_2 2583 3299" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12520784..12523532) /note="source:INTACT257_F186_scaffold_6-int 9585 12339" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12526493..12527421) /note="source:scaffold_9_CACTA_0931 3062 3992" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12526498..12526685) /note="source:CACAO_M_E5800_F12_scaffold_2 804 1001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12528098..12528808) /note="source:CACAO_M_E35511_F5_scaffold_5 9858 10599" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12528809..12531088) /note="source:CACAO_M_E11597_F33_scaffold_2 641 2936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12531089..12533188) /note="source:CACAO_M_E34938_F33_scaffold_5 842 2939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12533289..12534105) /note="source:CACAO_M_E42299_F33_scaffold_5 1 818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12534106..12534749 /note="source:CACAO_M_S_E83672_F33_scaffold_6 2290 2934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12534750..12535713) /note="source:CACAO_M_E35511_F5_scaffold_5 8876 9862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12537785..12537821 /note="source:INTACT257_F186_scaffold_6-int 2331 2367" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 12539232..12541986 /locus_tag="TCM_028224" /note="dbxref CacaoGD:Thecc1EG028224" mRNA join(12539232..12539924,12540751..12540914, 12540991..12541163,12541260..12541519,12541601..12541721, 12541960..12541986) /locus_tag="TCM_028224" /product="RHOMBOID-like protein 5" /inference="alignment:exonerate- protein:2:ricco:29841.m002838" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021923t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017301001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2922t1" CDS join(12539623..12539924,12540751..12540914, 12540991..12541163,12541260..12541519,12541601..12541673) /locus_tag="TCM_028224" /note="paralog of Thecc1EG021923t1" /codon_start=1 /product="RHOMBOID-like protein 5" /protein_id="EOY26474.1" /db_xref="Phytozome:GSVIVT01017301001" /db_xref="TAIR:AT1G52580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSR0" /translation="MGKGLPPPPSSDIETGRTYKSHRRTPPPPPQHFSPPAPKPWFAW LVPLVFVANIVMFVLTMYINNCPAKTGADKCLFYDYLGRFSFHPIKDNPLLGPSFSTL KELGALDWKLVVESKQAWRLISCIWLHAGVIHLVANMMSLLFIGIRLEQEFGFFRIGL LYVLSGFGGSLMSALASAGRKQTISVGASGALFGLLGAMLSELITNWTNYANKCAALL TLVLIISLNLAVGFLPHVDNSAHIGGFISGFLVGFILLIRPQFGYVSRKHIPPGYEIK HKKPKHKCYQYLLWIIALVLLITGYATGLTRLFKGQTFESKPLSSLD" gene complement(12542130..12558152) /locus_tag="TCM_028225" /note="dbxref CacaoGD:Thecc1EG028225" mRNA complement(join(12542130..12542301,12543839..12543909, 12544016..12544108,12544401..12544508,12544683..12544740, 12544830..12545151,12557927..12558152)) /locus_tag="TCM_028225" /product="Thiol-disulfide oxidoreductase DCC isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017300001" /inference="similar to AA sequence:ricco:29841.m002837" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc728t12" CDS complement(join(12542300..12542301,12543839..12543909, 12544016..12544108,12544401..12544508,12544683..12544740, 12544830..12545151,12557927..12557944)) /locus_tag="TCM_028225" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29841.m002837" /codon_start=1 /product="Thiol-disulfide oxidoreductase DCC isoform 1" /protein_id="EOY26475.1" /db_xref="TAIR:AT1G52590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSR1" /translation="MTIFQLSTSWTLDSVGSEWYPTFHVEPDKSPLNHFLPKRERKKM KKCFQQLLSSMALLLSGGCARLNFPTSAQSTNRFTVFATLSRPRPDTVNWVEATSSFF DHDTRPIMLFDGVCNLCNGGVRFVRDVDRNRRIRFESLQSEAGKKLLMRSGRAPDDIS SVVLVEKDRSYIKSEAVLKIMEYLDLPLPQLAFVLQFVPLFVRDFMYDNVANNRYALF GYSDS" mobile_element complement(12543419..12543663) /note="source:CACAO_M_S_E119191_F3_scaffold_9 10638 10836" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(12543654..12543909,12544016..12544108, 12544401..12544508,12544683..12544740,12544830..12545110)) /locus_tag="TCM_028225" /product="Thiol-disulfide oxidoreductase DCC isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017300001" /inference="similar to AA sequence:ricco:29841.m002837" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01096t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc728t12" mRNA complement(join(12543803..12544108,12544401..12544508, 12544683..12544740,12544830..12545107)) /locus_tag="TCM_028225" /product="Thiol-disulfide oxidoreductase DCC isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017300001" /inference="similar to AA sequence:ricco:29841.m002837" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc728t7; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc728t12" CDS complement(join(12543828..12543909,12544016..12544108, 12544401..12544508,12544683..12544740,12544830..12545040)) /locus_tag="TCM_028225" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29841.m002837" /codon_start=1 /product="Thiol-disulfide oxidoreductase DCC isoform 2" /protein_id="EOY26476.1" /db_xref="TAIR:AT1G52590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSR1" /translation="MKKCFQQLLSSMALLLSGGCARLNFPTSAQSTNRFTVFATLSRP RPDTVNWVEATSSFFDHDTRPIMLFDGVCNLCNGGVRFVRDVDRNRRIRFESLQSEAG KKLLMRSGRAPDDISSVVLVEKDRSYIKSEAVLKIMEYLDLPLPQLAFVLQFVPLFVR DFMYDNVANNRYALFGYSDSCEI" CDS complement(join(12544012..12544108,12544401..12544508, 12544683..12544740,12544830..12545040)) /locus_tag="TCM_028225" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29841.m002837" /codon_start=1 /product="Thiol-disulfide oxidoreductase DCC isoform 3" /protein_id="EOY26477.1" /db_xref="TAIR:AT1G52590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSR1" /translation="MKKCFQQLLSSMALLLSGGCARLNFPTSAQSTNRFTVFATLSRP RPDTVNWVEATSSFFDHDTRPIMLFDGVCNLCNGGVRFVRDVDRNRRIRFESLQSEAG KKLLMRSGRAPDDISSVVLVEKDRSYIKSEAVLKIMEYLDLPLPQLAFVLQFVPL" mobile_element complement(12545296..12547629) /note="source:CACAO_M_S_E66657_F76_scaffold_5 6116 8525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12547764..12547837) /note="source:CACAO_M_S_E66657_F76_scaffold_5 6054 6115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12549089..12550542 /note="source:CACAO_M_E5326_F22_scaffold_2 21173 22644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12550600..12551338) /note="source:CACAO_M_S_E66657_F76_scaffold_5 5298 6056" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12555397..12556265) /note="source:CACAO_M_S_E66657_F76_scaffold_5 4419 5287" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12556267..12557486 /note="source:INTACT224_F176_scaffold_8-int 4172 4831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12557589..12557859 /note="source:CACAO_M_E5326_F22_scaffold_2 21125 21351" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12557847..12558027) /note="source:CACAO_M_E12756_F7_scaffold_3 5140 5315" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12557992..12563161 /note="source:INTACT103_F9_scaffold_4-int 9103 14355" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12563643..12571034 /note="source:INTACT82F_F344_scaffold_2-int 1066 9135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12571052..12572560 /note="source:INTACT82F_F344_scaffold_2-int 1006 2550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12572767..12573079 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5524 5831" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(12572778..12593952) /locus_tag="TCM_028229" /note="dbxref CacaoGD:Thecc1EG028229" mRNA complement(join(12572778..12572800,12590781..12591101, 12593906..12593952)) /locus_tag="TCM_028229" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element 12573114..12574546 /note="source:INTACT224_F176_scaffold_8-int 788 2190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12578156..12578259) /note="source:INTACT280_F60_scaffold_5-int 10408 10514" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12578348..12578451) /note="source:INTACT280_F60_scaffold_5-int 10380 10483" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12580950..12581375 /note="source:CACAO_M_S_E119191_F3_scaffold_9 712 1139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12581376..12583715 /note="source:INTACT125_F13_scaffold_10-int 3346 5684" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12583714..12586296 /note="source:CACAO_M_S_E109853_F60_scaffold_9 12398 14929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12584450..12589743) /note="source:CACAO_M_S_E85473_F233_scaffold_7 3841 9056" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(12590843..12591097) /locus_tag="TCM_028229" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26478.1" /translation="MVNKGSGWNLTCDSHLLCMMPSVKRLLWMMIGMPLVENTQGDAV HYNISPVEDYDTISGEIAPDNDFNILPVALVLSMICFSAD" mobile_element 12591127..12591382 /note="source:scaffold_8_CACTA_0858 7578 7835" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12591383..12591486) /note="source:CACAO_M_S_E32578_F60_scaffold_4 8865 9163" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12592167..12592390 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5985 6232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12592561..12592967 /note="source:CACAO_M_S_E7818_F60_scaffold_2 19647 20001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12593232..12593754 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6595 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12594064..12597443 /note="source:INTACT280_F60_scaffold_5-int 248 3608" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12596458..12597651) /note="source:CACAO_M_S_E7818_F60_scaffold_2 21305 22500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12597652..12599393 /note="source:CACAO_M_E43590_F7_scaffold_5 1 1752" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(12599525..12603625) /locus_tag="TCM_028230" /note="dbxref CacaoGD:Thecc1EG028230" mRNA complement(join(12599525..12599958,12600031..12600420, 12600622..12601228,12601325..12602119,12602210..12602601, 12603401..12603625)) /locus_tag="TCM_028230" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400030535.2" /note="quality class is weak, express is weak, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.31 coverage" CDS complement(join(12599777..12599958,12600031..12600420, 12600622..12601228,12601325..12602119,12602210..12602482)) /locus_tag="TCM_028230" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26479.1" /translation="MVEGRQPVPPPPLQPLVPSLPKQLVAPHNLSATENPVSQSIHGA PQDLKTQTQLPISPRTQKKSFLSVTLGEKSAIITLNREPFLYRDRPTEIRNAFKGIGL AGAYDIRWLDYKHIHIGLSNEQDMNRIWLKQVWFISNQKLRVFKWTKDFQPEKESSLV PVWISFPNLRAHLYEKSAVLVIAKTVGRPLFVDEATDNGTRPSLARVCIEYDCLKPPL DQVWIVMRDRRTGEITGGFMQKVDFERMPDYCTHCCHVGHSVSTCIVMGNKRVMQGPE RAKPSDEKNKINTEEIGKDKQPVERRERLVRTENGNESIDINVKKQGMEWREVMKAGK SGTKDDGGVEIAAQDKEKGPVQNFSLGTITVVEERLDNEARFTGQNGGIRVTEQSASV GISSLIEQVGESPVHEFECEGNNVCHAQGPGTRNNKKGKSQQKSTERAAEPILHAEGM QSQEDASDREKGLGGVAMSSIAAAVRSPTRHGQWEPSNEEMSKSEMDFPQPAKGYKTL MQNPLSASAGGTIKNYFKEHAAHVIKPVDVDVSMAPAAGGDIACQSFLLPGSQAGSAA ALSRELAAEQRTGGNGKDGKGDLSAGEKAAASSAKPSDVQEKRAALFLNVQGKRGKIN IKKKKIRSQTGPVDTLEGSGEHNPNTEKSATQTTNNNKSASIVACPSDRIEVYAENPP NLEFVSEIEVHPRVRRRRHSDTEVSIDKILSLALDRAVDMGENDEASDEDAISVNFAT SWERERYF" mobile_element 12602483..12602538 /note="source:CACAO_M_S_E51867_F7_scaffold_4 5087 5143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12602533..12603816) /note="source:CACAO_M_S_E7818_F60_scaffold_2 15342 16599" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12603813..12608121) /note="source:CACAO_M_E24389_F60_scaffold_4 1112 5439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12608091..12608480 /note="source:CACAO_M_E49857_F85_scaffold_7 20677 21048" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12608783..12609126) /note="source:INTACT280_F60_scaffold_5-int 10399 10748" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12609283..12609895) /note="source:INTACT280_F60_scaffold_5-int 9424 10041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12609922..12612361 /note="source:scaffold_9_CACTA_0931 15824 18334" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12610779..12612561) /note="source:CACAO_M_E70891_F369_scaffold_10 14388 16165" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12612556..12613800) /note="source:CACAO_M_S_E19828_F19_scaffold_3 7239 8486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12613801..12614965 /note="source:scaffold_8_CACTA_0858 615 1782" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12615501..12616681) /note="source:CACAO_M_S_E64023_F13_scaffold_5 4 1892" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12618605..12621706 /note="source:CACAO_M_E48145_F15_scaffold_6 1 3102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12621507..12621729 /note="source:scaffold_8_CACTA_0859 11904 12129" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12623771..12623809) /note="source:CACAO_M_E36294_F51_scaffold_5 6366 6397" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12623810..12634457 /note="source:INTACT562_F254_scaffold_6-int 1 10648" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 12632577..12640956 /locus_tag="TCM_028235" /note="dbxref CacaoGD:Thecc1EG028235" mRNA join(12632577..12633148,12635596..12638577, 12638665..12638745,12639858..12640956) /locus_tag="TCM_028235" /product="Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene15711" /inference="similar to AA sequence:Phytozome:POPTR_0001s02160.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:PASA:2:TSA:puevd3b027305t1a2; alternateUTRof:Thecc1EG028235t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1071t3" mRNA join(12632580..12633148,12635596..12638278, 12638502..12638577,12638659..12638745,12638903..12638952) /locus_tag="TCM_028235" /product="Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene15711" /inference="similar to AA sequence:Phytozome:POPTR_0001s02160.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1071t3" CDS 12635743..12638196 /locus_tag="TCM_028235" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1" /protein_id="EOY26480.1" /db_xref="Phytozome:POPTR_0001s02160.1" /db_xref="TAIR:AT1G52620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU52" /translation="MSKTLLSRIKPLHIPKRNPSPPFRFPPRLKILITETIQILKTHP QWPDSLETRFCDEETCVSEVAHYVFDHIHDVELGIKFFDWVSKQEPQHFPLNELAHSS FLKLLARFRLFSEIETALENMKMEEIKPTHEALSFIVRVYVDSGFVDKALELFYSVVN IYNSVPNVSACNSLLNSLVELKKVEIAHQVFDEMVEREGCVDNYSVCIMVKGLCKVGK VEEGKKLVEDRWGEGCVPNVVFYNTLIDGCSTKRDVQRAKDLFKELKMKGFLPTLKTY GAMINGFCKKGDFKEIDKLLKEMKEMGLGVNTQVYNNIIDARFKHGFEVKVTETIKQM IESGCEPDIVTYNTLIIGLCKDGKVWEAGQLLKQAMKMGLIPNKFSYTPLIQGYCRVG EYFVALDLLIEMTESGHKPDLVAFGALVHGLVAKGEVDVALMIRHRMVEKGVLPDAGI YNVLMNGLCKKGRFSAAKVLLAKMLDQNVTPDAFVYATLVDGFIRNGDLLEAKKLFEI MIKEGMDPGTVGYNAMIKGFCKFGQMKEALLCVTRMMEVQVTLDEYTYSTIIDGYIKH HDMYGALRVFGQMVKRKCKPNVVTYTSLINGFCRSGDFNTAENAFKEMRSCGLEPNVV TYTILIGSFCKEGKLAKAVFYFELMLSNKCMPNDITFHYVVNGFSNSPTAILDNQSLE KKSLFIESFNMMISDGSAQRAAVYNSVLLCLCQNGMTGIAFQLKDKITNKGFVPDPVS FAAFLHGICLEGKSKEWRKMISNDLNEQELQTALKYSQLLNQYLPYGITSGASPILKT LIKDCSSRDQNNDLIVSVK" CDS 12635743..12638196 /locus_tag="TCM_028235" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1" /protein_id="EOY26482.1" /db_xref="Phytozome:POPTR_0001s02160.1" /db_xref="TAIR:AT1G52620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU52" /translation="MSKTLLSRIKPLHIPKRNPSPPFRFPPRLKILITETIQILKTHP QWPDSLETRFCDEETCVSEVAHYVFDHIHDVELGIKFFDWVSKQEPQHFPLNELAHSS FLKLLARFRLFSEIETALENMKMEEIKPTHEALSFIVRVYVDSGFVDKALELFYSVVN IYNSVPNVSACNSLLNSLVELKKVEIAHQVFDEMVEREGCVDNYSVCIMVKGLCKVGK VEEGKKLVEDRWGEGCVPNVVFYNTLIDGCSTKRDVQRAKDLFKELKMKGFLPTLKTY GAMINGFCKKGDFKEIDKLLKEMKEMGLGVNTQVYNNIIDARFKHGFEVKVTETIKQM IESGCEPDIVTYNTLIIGLCKDGKVWEAGQLLKQAMKMGLIPNKFSYTPLIQGYCRVG EYFVALDLLIEMTESGHKPDLVAFGALVHGLVAKGEVDVALMIRHRMVEKGVLPDAGI YNVLMNGLCKKGRFSAAKVLLAKMLDQNVTPDAFVYATLVDGFIRNGDLLEAKKLFEI MIKEGMDPGTVGYNAMIKGFCKFGQMKEALLCVTRMMEVQVTLDEYTYSTIIDGYIKH HDMYGALRVFGQMVKRKCKPNVVTYTSLINGFCRSGDFNTAENAFKEMRSCGLEPNVV TYTILIGSFCKEGKLAKAVFYFELMLSNKCMPNDITFHYVVNGFSNSPTAILDNQSLE KKSLFIESFNMMISDGSAQRAAVYNSVLLCLCQNGMTGIAFQLKDKITNKGFVPDPVS FAAFLHGICLEGKSKEWRKMISNDLNEQELQTALKYSQLLNQYLPYGITSGASPILKT LIKDCSSRDQNNDLIVSVK" mRNA join(12635747..12638278,12638502..12638577, 12638659..12638745,12639858..12639916,12640024..12640469) /locus_tag="TCM_028235" /product="Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene15711" /inference="similar to AA sequence:Phytozome:POPTR_0001s02160.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1071t3; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1071t3" CDS 12636109..12638196 /locus_tag="TCM_028235" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 2" /protein_id="EOY26481.1" /db_xref="Phytozome:POPTR_0001s02160.1" /db_xref="TAIR:AT1G52620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MU52" /translation="MKMEEIKPTHEALSFIVRVYVDSGFVDKALELFYSVVNIYNSVP NVSACNSLLNSLVELKKVEIAHQVFDEMVEREGCVDNYSVCIMVKGLCKVGKVEEGKK LVEDRWGEGCVPNVVFYNTLIDGCSTKRDVQRAKDLFKELKMKGFLPTLKTYGAMING FCKKGDFKEIDKLLKEMKEMGLGVNTQVYNNIIDARFKHGFEVKVTETIKQMIESGCE PDIVTYNTLIIGLCKDGKVWEAGQLLKQAMKMGLIPNKFSYTPLIQGYCRVGEYFVAL DLLIEMTESGHKPDLVAFGALVHGLVAKGEVDVALMIRHRMVEKGVLPDAGIYNVLMN GLCKKGRFSAAKVLLAKMLDQNVTPDAFVYATLVDGFIRNGDLLEAKKLFEIMIKEGM DPGTVGYNAMIKGFCKFGQMKEALLCVTRMMEVQVTLDEYTYSTIIDGYIKHHDMYGA LRVFGQMVKRKCKPNVVTYTSLINGFCRSGDFNTAENAFKEMRSCGLEPNVVTYTILI GSFCKEGKLAKAVFYFELMLSNKCMPNDITFHYVVNGFSNSPTAILDNQSLEKKSLFI ESFNMMISDGSAQRAAVYNSVLLCLCQNGMTGIAFQLKDKITNKGFVPDPVSFAAFLH GICLEGKSKEWRKMISNDLNEQELQTALKYSQLLNQYLPYGITSGASPILKTLIKDCS SRDQNNDLIVSVK" gene complement(12639174..12641803) /locus_tag="TCM_028236" /note="dbxref CacaoGD:Thecc1EG028236" mRNA complement(join(12639174..12639911,12640019..12640298, 12640444..12640739,12641264..12641803)) /locus_tag="TCM_028236" /product="Plant natriuretic peptide A" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017296001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038398t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017296001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g2973t3" CDS complement(join(12639905..12639911,12640019..12640298, 12640444..12640552)) /locus_tag="TCM_028236" /note="paralog of Thecc1EG038398t1" /codon_start=1 /product="Plant natriuretic peptide A" /protein_id="EOY26483.1" /db_xref="Phytozome:GSVIVT01017296001" /translation="MALLVLAIMIAAAISKEVYFVHGDIGTASFYNPPYIPTKCDGNR EEQFPPGNLFVAVSEGLWDNGAACGRRYRLRCLSGPQRPCKHRTIDVKVVDFCPVTPC LSTMMLSRDAFAAIAHQHGRKINIEYIQV" gene complement(12642024..12646130) /locus_tag="TCM_028237" /note="dbxref CacaoGD:Thecc1EG028237" mRNA complement(join(12642024..12643293,12643392..12643613, 12644837..12644925,12645017..12645087,12645603..12645682, 12645759..12646128)) /locus_tag="TCM_028237" /product="O-fucosyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06100.1" /inference="similar to AA sequence:frave:gene05886" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01729t00001" mRNA complement(join(12642024..12643293,12643392..12643613, 12644837..12644925,12645017..12645122,12645603..12645682, 12645759..12646128)) /locus_tag="TCM_028237" /product="O-fucosyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06100.1" /inference="similar to AA sequence:frave:gene05886" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b027308t1a2; inference alignment:Newbler:10:TSA:cgbaL_g01729t00001" mRNA complement(join(12642511..12643293,12643392..12643613, 12644837..12644925,12645017..12645078,12645603..12645692, 12645759..12646130)) /locus_tag="TCM_028237" /product="O-fucosyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06100.1" /inference="similar to AA sequence:frave:gene05886" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc779t1; alternateUTRof:Thecc1EG028237t2; inference alignment:Newbler:10:TSA:cgbaL_g01729t00001" CDS complement(join(12642558..12643293,12643392..12643613, 12644837..12644925,12645017..12645087,12645603..12645682, 12645759..12645910)) /locus_tag="TCM_028237" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene05886" /codon_start=1 /product="O-fucosyltransferase family protein isoform 1" /protein_id="EOY26484.1" /db_xref="TAIR:AT1G52630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY81" /translation="MIMVSVKPLFVLISTLSLFLAIVLLSPSRPFSQPSQSVNSLNML PIRSLSRGKSDIWSVKRIVEWRPCKWWLQSHLTPLPAKSNGYIRVNCYGGLNQMRRDF CDGVGIARLLNATLVLPKFEVAAYWNESSGFADVFDVNYFIKQMSGFVKVVRELPPEI SSKEPFRVDCSKRKGQFDYIESVLPSLLKHHYISITPAMSQRRDRYPQYAKAALCQGC YSALRLTKSLEKKANELLEAIPKPFLALHLRFEPDMVAYSQCQYSGLSPTSIEAIEAA RGDDRKPWTGEAARIWRKRGKCPLIPNETAFILQAISVPTNTNIYLAAGDGLMEIEGL TSIYTNVVTKSALLSGEDFKSMHGNTKAALDYYVSINSDSYVATYFGNMDKMVAAMRA FKGLYKTLFLSRRAFSEFTSEGLEGKQLMKALWKVHKEDFVMGRGSALPDCFCEFKL" CDS complement(join(12642558..12643293,12643392..12643613, 12644837..12644925,12645017..12645028)) /locus_tag="TCM_028237" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene05886" /codon_start=1 /product="O-fucosyltransferase family protein isoform 2" /protein_id="EOY26485.1" /db_xref="TAIR:AT1G52630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY81" /translation="MRRDFCDGVGIARLLNATLVLPKFEVAAYWNESSGFADVFDVNY FIKQMSGFVKVVRELPPEISSKEPFRVDCSKRKGQFDYIESVLPSLLKHHYISITPAM SQRRDRYPQYAKAALCQGCYSALRLTKSLEKKANELLEAIPKPFLALHLRFEPDMVAY SQCQYSGLSPTSIEAIEAARGDDRKPWTGEAARIWRKRGKCPLIPNETAFILQAISVP TNTNIYLAAGDGLMEIEGLTSIYTNVVTKSALLSGEDFKSMHGNTKAALDYYVSINSD SYVATYFGNMDKMVAAMRAFKGLYKTLFLSRRAFSEFTSEGLEGKQLMKALWKVHKED FVMGRGSALPDCFCEFKL" CDS complement(join(12642558..12643293,12643392..12643613, 12644837..12644925,12645017..12645028)) /locus_tag="TCM_028237" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene05886" /codon_start=1 /product="O-fucosyltransferase family protein isoform 2" /protein_id="EOY26486.1" /db_xref="TAIR:AT1G52630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY81" /translation="MRRDFCDGVGIARLLNATLVLPKFEVAAYWNESSGFADVFDVNY FIKQMSGFVKVVRELPPEISSKEPFRVDCSKRKGQFDYIESVLPSLLKHHYISITPAM SQRRDRYPQYAKAALCQGCYSALRLTKSLEKKANELLEAIPKPFLALHLRFEPDMVAY SQCQYSGLSPTSIEAIEAARGDDRKPWTGEAARIWRKRGKCPLIPNETAFILQAISVP TNTNIYLAAGDGLMEIEGLTSIYTNVVTKSALLSGEDFKSMHGNTKAALDYYVSINSD SYVATYFGNMDKMVAAMRAFKGLYKTLFLSRRAFSEFTSEGLEGKQLMKALWKVHKED FVMGRGSALPDCFCEFKL" mobile_element complement(12649850..12651236) /note="source:scaffold_8_CACTA_0859 16514 17883" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12651613..12651702) /note="source:INTACT1587F_F5_scaffold_9-int 9193 9283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12654939..12655155) /note="source:INTACT19F_F94_scaffold_1-int 14699 14907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12655514..12656441) /note="source:CACAO_M_S_E99574_F14_scaffold_9 250 1181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12656430..12657462) /note="source:CACAO_M_E3884_F22_scaffold_1 18613 19615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12656564..12659969 /note="source:CACAO_M_E3746_F14_scaffold_1 846 4247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12659970..12662765 /note="source:CACAO_M_E48146_F87_scaffold_6 1 2796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12662766..12663316) /note="source:INTACT688_F14_scaffold_11-int 1629 5436" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12663317..12667745 /note="source:scaffold_6_CACTA_0708 1 4429" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12667281..12668410 /note="source:CACAO_M_S_E99214_F90_scaffold_9 11429 12251" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12667746..12667943) /note="source:INTACT688_F14_scaffold_11-int 254 1628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12668348..12668417) /note="source:CACAO_M_E3248_F5_scaffold_1 6816 6885" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12669221..12669773 /note="source:CACAO_M_E49885_F60_scaffold_7 1024 1569" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12670860..12693813 /note="source:CACAO_M_S_E83372_F14_scaffold_6 1 22954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12694909..12696570 /note="source:CACAO_M_E58324_F9_scaffold_9 21588 23264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12696567..12696808 /note="source:INTACT405F_F91_scaffold_4-int 10992 11234" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12696693..12696823 /note="source:CACAO_M_S_E52921_F60_scaffold_5 16416 16544" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12696806..12698467) /note="source:INTACT678_F12_scaffold_2-int 1 1654" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12703243..12703898 /note="source:INTACT167_F5_scaffold_2-int 4391 5045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12704020..12706943 /note="source:CACAO_M_E48158_F143_scaffold_6 1 2924" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12709004..12709655 /note="source:INTACT167_F5_scaffold_2-int 5042 5692" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12709691..12710323) /note="source:INTACT518_F239_scaffold_2-int 8608 9255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12710425..12711463) /note="source:INTACT518_F239_scaffold_2-int 7175 8288" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12711464..12722436 /note="source:CACAO_M_S_E83391_F15_scaffold_6 1 10955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12722437..12722821) /note="source:INTACT518_F239_scaffold_2-int 6779 7161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12722823..12723298) /note="source:CACAO_M_E48167_F172_scaffold_6 2475 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12723299..12730670 /note="source:CACAO_M_E48164_F87_scaffold_6 1 7372" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12730713..12733135 /note="source:CACAO_M_S_E146091_F272_scaffold_11 6710 9125" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12733128..12734574) /note="source:scaffold_2_CACTA_0259 3877 5328" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12734575..12737526 /note="source:CACAO_M_E48167_F172_scaffold_6 1 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12737527..12738092) /note="source:scaffold_2_CACTA_0259 3298 3881" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12738080..12741698 /note="source:CACAO_M_S_E5046_F335_scaffold_1 15431 19049" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12744345..12746872) /note="source:CACAO_M_E52239_F256_scaffold_7 19813 21509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12749822..12751005 /note="source:CACAO_M_E24592_F195_scaffold_4 19420 20571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12750738..12751087) /note="source:INTACT146F_F14_scaffold_2-int 4579 4927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12753313..12754902 /note="source:CACAO_M_E43672_F60_scaffold_5 10451 11976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12755941..12763829) /note="source:INTACT667_F51_scaffold_5-int 1914 9789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12762666..12764507) /note="source:CACAO_M_E57385_F197_scaffold_9 2878 4720" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12764508..12764728) /note="source:CACAO_M_E35644_F96_scaffold_5 2504 2724" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12766899..12767314) /note="source:CACAO_M_E35644_F96_scaffold_5 1 416" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12767315..12767581) /note="source:CACAO_on_E446_scaffold_2 4458 4724" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 12767582..12767603 /note="source:CACAO_M_S_E83691_F15_scaffold_6 1924 2147" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12768494..12769073 /note="source:CACAO_M_E84735_F230_scaffold_10 1 580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12769174..12769516 /note="source:INTACT598_F89_scaffold_2-int 10554 10896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12769617..12770919 /note="source:INTACT598_F89_scaffold_2-int 10899 12038" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12770698..12770976) /note="source:CACAO_M_E3326_F17_scaffold_1 9140 9447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12778663..12782794) /note="source:CACAO_M_S_E66639_F28_scaffold_5 1487 5662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12782779..12783431 /note="source:INTACT146F_F14_scaffold_2-int 13561 14227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12782857..12784109) /note="source:CACAO_M_E24592_F195_scaffold_4 1458 2632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12792353..12792453 /note="source:CACAO_M_S_E15852_F81_scaffold_2 2836 2939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12793356..12796336 /note="source:CACAO_M_E48188_F81_scaffold_6 1 2981" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12799274..12800257 /note="source:CACAO_M_E9978_F12_scaffold_2 19956 20939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12800611..12800894 /note="source:CACAO_M_E24592_F195_scaffold_4 20384 20679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12809602..12809662 /note="source:CACAO_M_E1841_F5_scaffold_1 22975 23035" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12809657..12812293) /note="source:INTACT95_F143_scaffold_9-int 7665 10300" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12812405..12812932 /note="source:CACAO_M_E1841_F5_scaffold_1 22075 22582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12812961..12813126 /note="source:CACAO_M_E5899_F5_scaffold_2 21678 21846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12813497..12814132 /note="source:CACAO_M_E5899_F5_scaffold_2 22063 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12813745..12814178) /note="source:scaffold_3_CACTA_0388 8024 8457" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12815255..12816872 /note="source:scaffold_3_CACTA_0382 296 1868" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12816983..12820773 /note="source:INTACT39F_F22_scaffold_1-int 3567 7435" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12820770..12820921 /note="source:scaffold_3_CACTA_0382 1961 2113" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12820897..12820977 /note="source:CACAO_M_E42530_F72_scaffold_5 4001 4080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12820924..12821020 /note="source:scaffold_3_CACTA_0382 2317 2412" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12821165..12821922) /note="source:CACAO_M_S_E5046_F335_scaffold_1 3410 4140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12821925..12823101) /note="source:CACAO_on_E18_scaffold_1 4451 5635" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(12823117..12824760) /note="source:INTACT616_F52_scaffold_1-int 1 1652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12826158..12826853 /note="source:CACAO_M_E1841_F5_scaffold_1 21981 22588" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12826874..12827040 /note="source:CACAO_M_E5899_F5_scaffold_2 21678 21846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12827410..12828070 /note="source:CACAO_M_E1841_F5_scaffold_1 16002 16662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12828964..12829083) /note="source:INTACT167_F5_scaffold_2-int 14705 14810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12829154..12831816 /note="source:CACAO_M_E48198_F144_scaffold_6 1 2663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12831862..12831964) /note="source:INTACT189_F49_scaffold_5-int 1372 1472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12832028..12833460 /note="source:INTACT558_F9_scaffold_9-int 2 1450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12834781..12835645) /note="source:INTACT85_F9_scaffold_4-int 576 1446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12835646..12838084 /note="source:CACAO_M_E10324_F143_scaffold_2 1 2440" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12838085..12842522 /note="source:INTACT740_F9_scaffold_10-int 1 4427" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12841615..12842995) /note="source:CACAO_M_S_E5872_F9_scaffold_2 3166 4532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12842996..12843381) /note="source:CACAO_M_E36185_F9_scaffold_5 10399 10793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12844886..12845119) /note="source:CACAO_M_E36185_F9_scaffold_5 8725 8958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12845220..12846193) /note="source:CACAO_M_E33933_F9_scaffold_4 14412 15385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12846182..12848146) /note="source:CACAO_M_S_E5872_F9_scaffold_2 953 3174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12848147..12849683 /note="source:CACAO_M_S_E51867_F7_scaffold_4 1 1538" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(12849232..12861856) /locus_tag="TCM_028252" /note="dbxref CacaoGD:Thecc1EG028252" mRNA complement(join(12849232..12849264,12859140..12859218, 12859468..12859551,12859632..12859890,12861465..12861856)) /locus_tag="TCM_028252" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete" mobile_element 12849687..12852635 /note="source:CACAO_M_E48206_F72_scaffold_6 1 2949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12852636..12854110 /note="source:INTACT95_F143_scaffold_9-int 5940 7419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12854096..12855049) /note="source:CACAO_M_E72867_F9_scaffold_10 1 959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12855050..12855565) /note="source:CACAO_M_E72689_F143_scaffold_10 1 516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12855566..12856144 /note="source:CACAO_M_S_E16386_F9_scaffold_2 8281 8862" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(12859171..12859218,12859468..12859551, 12859632..12859712)) /locus_tag="TCM_028252" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26487.1" /translation="MKKRRKKEMRKKKKTRKVRPSGSKLRKVLQELKEINACLWVNLG IQGDFELDKLWVKDLMIDVLPVLENN" mobile_element 12862241..12865127 /note="source:scaffold_10_CACTA_0130 2966 5849" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12864843..12865941) /note="source:CACAO_M_S_E5046_F335_scaffold_1 15308 16406" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12866399..12867290 /note="source:scaffold_2_CACTA_0259 3976 4838" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12867971..12868335 /note="source:scaffold_10_CACTA_0130 121 488" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12868321..12868336 /note="source:CACAO_M_S_E7818_F60_scaffold_2 18537 18590" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12868337..12868417 /note="source:scaffold_2_CACTA_0259 5424 5504" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12868373..12870305) /note="source:scaffold_2_CACTA_0259 3550 5490" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12870302..12880933 /note="source:INTACT679_F298_scaffold_6-int 1 9403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12880934..12884836 /note="source:CACAO_M_S_E5046_F335_scaffold_1 15501 19479" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12884980..12886391) /note="source:scaffold_2_CACTA_0259 5424 6887" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12886303..12886406) /note="source:CACAO_M_E5326_F22_scaffold_2 19798 19905" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12887788..12887864) /note="source:CACAO_M_E14347_F12_scaffold_3 8773 8829" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12888233..12893288 /note="source:CACAO_M_E12756_F7_scaffold_3 1 5049" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12891590..12894490) /note="source:CACAO_M_S_E64440_F7_scaffold_5 13799 16728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12893273..12898441 /note="source:CACAO_M_E13157_F7_scaffold_3 5216 10396" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12898442..12898558 /note="source:scaffold_10_CACTA_0130 2205 2321" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12898561..12901867) /note="source:CACAO_M_E69275_F82_scaffold_9 1 3319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12901868..12903320 /note="source:scaffold_10_CACTA_0130 2317 3848" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12904560..12908777 /note="source:INTACT698_F303_scaffold_9-int 1 4256" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12908878..12911754 /note="source:INTACT698_F303_scaffold_9-int 4269 7152" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12912952..12917063 /note="source:INTACT698_F303_scaffold_9-int 3195 7345" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12922384..12922762) /note="source:INTACT135F_F90_scaffold_2-int 13636 14006" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12922894..12924293) /note="source:CACAO_M_E52239_F256_scaffold_7 5029 7057" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12924294..12927148 /note="source:CACAO_M_E48228_F15_scaffold_6 1 2855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12927149..12928263) /note="source:CACAO_M_E52239_F256_scaffold_7 19812 20988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12930417..12930521 /note="source:scaffold_4_CACTA_0510 2115 2219" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12930711..12931110 /note="source:scaffold_4_CACTA_0510 2271 2671" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12932806..12933719) /note="source:CACAO_M_E52239_F256_scaffold_7 21522 22450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12934205..12934606) /note="source:CACAO_M_S_E34046_F60_scaffold_4 6459 6851" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12934275..12934992 /note="source:CACAO_M_E14113_F106_scaffold_3 4877 5601" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12934995..12935026) /note="source:CACAO_M_E52239_F256_scaffold_7 5751 5782" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12935000..12936688 /note="source:scaffold_4_CACTA_0493 3528 5253" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12947167..12950145) /note="source:CACAO_M_E42558_F7_scaffold_5 1 2975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12950391..12953117 /note="source:CACAO_M_E73087_F12_scaffold_10 7863 10651" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(12952689..12956654) /locus_tag="TCM_028258" /note="dbxref CacaoGD:Thecc1EG028258" mRNA complement(join(12952689..12953385,12953621..12953915, 12954074..12954242,12956514..12956654)) /locus_tag="TCM_028258" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036740t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage" CDS complement(join(12953351..12953385,12953621..12953915, 12954074..12954242,12956514..12956527)) /locus_tag="TCM_028258" /note="paralog of Thecc1EG036740t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26488.1" /translation="MISQRCIPLSASFFLWRLIQDWILVEMRLKIKGFQFASKCQCCN SEETLLHVMWDNSVAKQRNDAKHRSLGMYPNRVIWQILKLIRQLFHGRQFQRWQWRGD IQIAQMWGLTFPRKVLSLPKIISWHKPLTGEFKLNVDGSFINNFQNAVGGGLLRDHIG SPTSIGKVIK" mobile_element complement(12955997..12958940) /note="source:CACAO_M_E57385_F197_scaffold_9 1798 4720" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(12958563..12960606) /locus_tag="TCM_028259" /note="dbxref CacaoGD:Thecc1EG028259" mRNA complement(join(12958563..12960124,12960196..12960606)) /locus_tag="TCM_028259" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026874t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400021026" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(12959546..12960124,12960196..12960399)) /locus_tag="TCM_028259" /note="paralog of Thecc1EG026874t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26489.1" /db_xref="Phytozome:PGSC0003DMP400021026" /translation="MESTSGKSRINKELIPVPYFLENYFAEMEVHPRVQHKRNSDPVG LSLASEKAMDMREKDGMSDDDSISVIQRRLKSLKLVHKIMLLVVLEPMVEETKAEFFR RKLGYEKVITNNSKKIWIFHSFDISYEVILNHNQCLHVSLSFQWLECPILATFVYVKC TRTERIPLWIVLRSLSVDIRVPWLVGGDFNVILNRAERLYGASPHAGSMDDFAATLLD YGLVDGGFEGNTYTWTNSHVFQRLDRIVYNHQWMGLLPITRV" mobile_element complement(12961947..12962018) /note="source:INTACT24F_F12_scaffold_1-int 12525 12595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12963467..12965850) /note="source:scaffold_4_CACTA_0493 2830 5253" /mobile_element_type="transposon:TIR/CACTA" gene complement(12967456..12969646) /locus_tag="TCM_028260" /note="dbxref CacaoGD:Thecc1EG028260" mRNA complement(12967456..12969646) /locus_tag="TCM_028260" /product="Pentatricopeptide repeat (PPR) superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene05886" /inference="similar to AA sequence:Phytozome:POPTR_0004s10260.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09794t00001" CDS complement(12968018..12969580) /locus_tag="TCM_028260" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein" /protein_id="EOY26490.1" /db_xref="Phytozome:POPTR_0004s10260.1" /db_xref="TAIR:AT1G52640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSR6" /translation="MAVPSLSKTRPIHSLFRSLYHPKPFLFFSSLTQEQPTSRPLANL VTEISRVLSDHRNPHHDLDRSLTTFSSHISTQLVEQVLKRCKNLGFSAHRFFLWAEKI PGFQHSDKSYHILVDILGSSKQFAILWDLLIEIRDGKQFEINPEIFWVVFRAYCRANL PGDAIRAFDRMVEFGIRPSIHDVDQLLFVLCKRKHVKQAQGFFDRVKHEFEPSAKSYS ILVRGWGDIGEACQARKVFDEMVQRGCSIDVLAYNCLLEALCKSGNVDEAYKMFGAMG SSRIELDACSYSVFIRAYCEANDIHAAFRVLDRMRRYNLVPNLFTYNCIIRKLCNNDK VDEAYQLLTEMIERGISPDEWSYNAILAYHCEHSEVNRALNLISRMEKNECFPDRHTY NMALKLLIRIGRFDRATELWESMANRGFYPSVSTYAVMIHGLCKKRGKLEEACRYFEI MIDEGIPPYSSTVELLRNRLLGLGFLDNIEILANKMARSSSCSIQELANAMRGKTAYR RTRSEETELESE" mobile_element complement(12974730..12977261) /note="source:scaffold_9_CACTA_0929 945 3488" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12980058..12980866) /note="source:CACAO_M_S_E16675_F51_scaffold_2 2288 3101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12980967..12982429) /note="source:CACAO_M_S_E16675_F51_scaffold_2 806 2259" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12982430..12985349 /note="source:INTACT212_F171_scaffold_10-int 1 2807" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12984441..12994334 /note="source:scaffold_6_CACTA_0709 1 9894" /mobile_element_type="transposon:TIR/CACTA" gene 12996474..12998104 /locus_tag="TCM_028262" /note="dbxref CacaoGD:Thecc1EG028262" mRNA join(12996474..12996746,12996865..12996970, 12997675..12998104) /locus_tag="TCM_028262" /product="Lactoylglutathione lyase / glyoxalase I family protein" /inference="alignment:exonerate- protein:2:ricco:29841.m002828" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038045t1" /inference="similar to AA sequence:ricco:29841.m002828" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1885t9" CDS join(12996592..12996746,12996865..12996970, 12997675..12997926) /locus_tag="TCM_028262" /note="dbxref ricco:29841.m002828; paralog of Thecc1EG038045t1" /codon_start=1 /product="Lactoylglutathione lyase / glyoxalase I family protein" /protein_id="EOY26491.1" /db_xref="TAIR:AT1G80160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U0Z1" /translation="MKENVDNPLHLKSLNHVSLVCRSVEESINFYQNILGFVPIRRPG SFDFNGAWLFGYGIGIHLLQSEDPDNMPKKKKINPKDNHISFQCESMGAVEKKLKEME LEYVRAMVEEGGIYVEQLFFHDPDGFMIEICNCDNLPVIPLAGEMVRSCSRLNLQMLQ HQQIQRVVQQ" mobile_element 12998372..13003309 /note="source:CACAO_LINE_E_166_scaffold_6 1 4938" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 13003391..13007567 /note="source:CACAO_M_E48251_F15_scaffold_6 1 2757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13007568..13009139) /note="source:CACAO_M_S_E145698_F277_scaffold_11 13119 14687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13015290..13017282 /note="source:CACAO_M_E49857_F85_scaffold_7 361 2347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13017280..13018216) /note="source:CACAO_M_E69760_F9_scaffold_9 7132 7812" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13018558..13021519 /note="source:CACAO_M_E48255_F33_scaffold_6 1 2962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13024185..13025848 /note="source:CACAO_M_E69760_F9_scaffold_9 8001 9650" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13025844..13026193 /note="source:scaffold_4_CACTA_0493 3200 3542" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13026287..13029366 /note="source:CACAO_M_E48260_F306_scaffold_6 1 3080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13029367..13029891 /note="source:scaffold_4_CACTA_0493 3950 4528" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13030357..13030675 /note="source:scaffold_4_CACTA_0493 1267 1585" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13030792..13030832 /note="source:scaffold_4_CACTA_0493 1585 1625" /mobile_element_type="transposon:TIR/CACTA" gene complement(13032498..13035447) /locus_tag="TCM_028265" /note="dbxref CacaoGD:Thecc1EG028265" mRNA complement(join(13032498..13033570,13035352..13035447)) /locus_tag="TCM_028265" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.39 coverage" CDS complement(13033274..13033528) /locus_tag="TCM_028265" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26492.1" /translation="MQTCYPSQICHDKYFIRSGFTINLTVPHRMEHLECRVAHQAQCT RVIKQMFYVCAHHMGMDMSNFSTTSEDHHTNDDDEEDKDE" mobile_element complement(13033466..13034194) /note="source:CACAO_M_E85169_F246_scaffold_10 2246 2978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13034194..13036828 /note="source:CACAO_M_E27121_F246_scaffold_4 327 2964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13037064..13037749 /note="source:INTACT642F_F365_scaffold_5-int 8525 9216" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13038599..13039750 /note="source:INTACT167_F5_scaffold_2-int 13746 14951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13041252..13041712) /note="source:CACAO_M_S_E15173_F4_scaffold_2 1408 1868" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13041713..13044606 /note="source:CACAO_M_S_E83511_F15_scaffold_6 1 2894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13044607..13044662) /note="source:CACAO_M_S_E15173_F4_scaffold_2 1357 1412" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13044660..13045946) /note="source:INTACT745_F320_scaffold_4-int 2081 3354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13046410..13049112 /note="source:CACAO_M_S_E83514_F231_scaffold_6 1 2703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13049813..13052534 /note="source:INTACT563_F255_scaffold_10-int 1831 4564" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13052098..13055415) /note="source:INTACT745_F320_scaffold_4-int 2281 5599" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13056802..13058073 /note="source:INTACT563_F255_scaffold_10-int 1831 3118" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13058073..13059416) /note="source:INTACT167_F5_scaffold_2-int 3834 5193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13059787..13059924) /note="source:INTACT563_F255_scaffold_10-int 7425 7557" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13060157..13060220) /note="source:INTACT39F_F22_scaffold_1-int 864 924" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13060167..13060229 /note="source:CACAO_M_S_E85177_F5_scaffold_7 163 225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13066981..13067384) /note="source:scaffold_8_CACTA_0859 15426 15829" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13067388..13068448) /note="source:scaffold_8_CACTA_0859 594 1628" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13070475..13070971) /note="source:scaffold_2_CACTA_0260 6 504" /mobile_element_type="transposon:TIR/CACTA" gene 13077964..13142400 /locus_tag="TCM_028269" /note="dbxref CacaoGD:Thecc1EG028269" mRNA join(13077964..13078047,13078753..13079377, 13079456..13079526,13079699..13079809,13080133..13080189, 13085948..13086003,13090790..13090922,13142160..13142400) /locus_tag="TCM_028269" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.12 coverage" CDS join(13079267..13079377,13079456..13079526, 13079699..13079809,13080133) /locus_tag="TCM_028269" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26493.1" /translation="MCNVGVHMTVIVVCCVSAHTDGICHAWFESAHDSYSGCGSAQAD SSYVRCGSAHELVRWEFEIHSRCGKKLSSARSLTSLDFRCSKNAFSPQRETLE" mobile_element 13080457..13080562 /note="source:CACAO_M_E58715_F13_scaffold_9 5960 6064" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13087932..13088109 /note="source:INTACT39F_F22_scaffold_1-int 3280 3440" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13088118..13091038 /note="source:INTACT88_F12_scaffold_4-int 1290 4203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13091112..13094098 /note="source:CACAO_M_S_E83522_F7_scaffold_6 1 2987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13094164..13094221 /note="source:scaffold_8_CACTA_0859 17415 17472" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13094305..13094625 /note="source:scaffold_2_CACTA_0260 27 345" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13094629..13095076) /note="source:INTACT745_F320_scaffold_4-int 2965 3354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13097439..13097966) /note="source:CACAO_M_E5899_F5_scaffold_2 19652 20178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13098235..13098493) /note="source:CACAO_M_E14312_F12_scaffold_3 11044 11303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13099561..13102298) /note="source:CACAO_M_S_E101631_F270_scaffold_9 3133 5872" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13105738..13107408) /note="source:CACAO_M_S_E101631_F270_scaffold_9 423 2099" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13110286..13113351 /note="source:CACAO_M_E48279_F42_scaffold_6 1 3066" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13113782..13116682 /note="source:CACAO_M_E50697_F15_scaffold_7 89 2973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13117336..13127282 /note="source:INTACT423_F7_scaffold_6-int 1 9947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13127900..13127978 /note="source:CACAO_M_E5899_F5_scaffold_2 20702 20786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13128468..13128536) /note="source:scaffold_3_CACTA_0382 1860 1921" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13128479..13128551 /note="source:CACAO_M_S_E101631_F270_scaffold_9 2104 2178" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13133357..13134388 /note="source:INTACT135F_F90_scaffold_2-int 12857 14008" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13137465..13137536 /note="source:INTACT85_F9_scaffold_4-int 12219 12293" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13140909..13144440) /locus_tag="TCM_028272" /note="dbxref CacaoGD:Thecc1EG028272" mRNA complement(join(13140909..13141416,13141518..13141738, 13144208..13144440)) /locus_tag="TCM_028272" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(13141214..13141416,13141518..13141593)) /locus_tag="TCM_028272" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26494.1" /translation="MFASRGLYHRCSYDSVTSTIATNYARTFGFTMSPMTSSNGRLWS SCSVCGLVVAFVRVSCCTASLQSVQVSDNILVETRVYTHGKSISSVLR" mobile_element complement(13142274..13142347) /note="source:CACAO_M_S_E101631_F270_scaffold_9 2907 2980" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13142500..13143557 /note="source:scaffold_4_CACTA_0494 1798 2745" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13143757..13143829 /note="source:CACAO_M_E5899_F5_scaffold_2 21774 21846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13144277..13144537 /note="source:INTACT405F_F91_scaffold_4-int 7316 7603" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13149679..13149726 /note="source:CACAO_M_E58324_F9_scaffold_9 24023 24069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13150543..13152250 /note="source:CACAO_M_S_E101631_F270_scaffold_9 15584 17306" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13152248..13159885) /note="source:CACAO_M_S_E109876_F7_scaffold_9 1 7638" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13166039..13166100 /note="source:INTACT1625F_F66_scaffold_10-int 7432 7494" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13166282..13166405 /note="source:CACAO_M_E48538_F49_scaffold_6 12133 12268" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13166581..13170603 /note="source:INTACT1625F_F66_scaffold_10-int 1 4102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13170580..13170642) /note="source:CACAO_M_E58324_F9_scaffold_9 10181 10239" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13172420..13173279) /note="source:CACAO_M_E58324_F9_scaffold_9 7669 8539" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13173280..13174853 /note="source:INTACT1625F_F66_scaffold_10-int 4096 5668" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13174853..13175338) /note="source:INTACT597_F267_scaffold_2-int 8195 8663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13175339..13178189 /note="source:CACAO_M_S_E83537_F78_scaffold_6 1 2851" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13178190..13178500) /note="source:INTACT597_F267_scaffold_2-int 7888 8199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13178500..13181476 /note="source:CACAO_M_E48288_F246_scaffold_6 1 2977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13181477..13182403) /note="source:INTACT597_F267_scaffold_2-int 6968 7893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13182115..13183480 /note="source:INTACT409F_F47_scaffold_4-int 17724 19002" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13182549..13183504) /note="source:INTACT597_F267_scaffold_2-int 12989 13951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13183479..13183688) /note="source:INTACT597_F267_scaffold_2-int 14004 14212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13183690..13184704) /note="source:INTACT597_F267_scaffold_2-int 12003 13014" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13185031..13187091) /note="source:INTACT597_F267_scaffold_2-int 9932 11994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13187092..13190198 /note="source:CACAO_M_E48290_F15_scaffold_6 1 3107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13190055..13190216) /note="source:INTACT39F_F22_scaffold_1-int 13712 13874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13190504..13193250) /note="source:INTACT597_F267_scaffold_2-int 6980 9749" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13193250..13196046) /note="source:CACAO_on_E18_scaffold_1 2858 5635" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 13196047..13196234 /note="source:INTACT409F_F47_scaffold_4-int 17957 18128" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13196223..13196234) /note="source:CACAO_M_E22484_F328_scaffold_3 14254 14264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13196235..13196312 /note="source:INTACT597_F267_scaffold_2-int 1 78" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13196313..13199065 /note="source:CACAO_M_E5429_F369_scaffold_2 1 2742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13199061..13199831) /note="source:CACAO_M_E22484_F328_scaffold_3 11522 12314" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13199831..13200758 /note="source:INTACT1625F_F66_scaffold_10-int 6159 7086" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13200759..13203728 /note="source:CACAO_M_E48297_F246_scaffold_6 1 2970" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13202306..13217267) /locus_tag="TCM_028275" /note="dbxref CacaoGD:Thecc1EG028275" mRNA complement(join(13202306..13202379,13214924..13215838, 13217210..13217267)) /locus_tag="TCM_028275" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06080.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1124t2" mobile_element complement(13203700..13203748) /note="source:CACAO_M_S_E119191_F3_scaffold_9 3389 3432" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13203728..13204836 /note="source:INTACT1625F_F66_scaffold_10-int 7081 8195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13204837..13206024) /note="source:INTACT504_F7_scaffold_1-int 8780 9971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13206025..13208969 /note="source:CACAO_M_E58562_F246_scaffold_9 1 2966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13208970..13210775) /note="source:CACAO_M_S_E2086_F7_scaffold_1 1 1809" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13210776..13211958 /note="source:INTACT1625F_F66_scaffold_10-int 852 1863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13211910..13211965 /note="source:CACAO_Mutator_E206_scaffold_1 5624 5672" /mobile_element_type="transposon:TIR/Mutator" mRNA complement(join(13215108..13215133,13215204..13215218, 13215347..13215893)) /locus_tag="TCM_028275" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06080.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1124t1; alternateUTRof:Thecc1EG028275t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1124t2" CDS complement(13215397..13215753) /locus_tag="TCM_028275" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY26495.1" /translation="MGSPLSMGTHPLAKKESSASKTRETHLTIAMKNGSMPRSYQNSA IPEANVHNNFTDNRAMRSNVSDKKPVAAPNKLEKKPSVDINESAEAFIKKFRHQLLLQ RLESIENYEQMLARGL" CDS complement(13215397..13215753) /locus_tag="TCM_028275" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY26496.1" /translation="MGSPLSMGTHPLAKKESSASKTRETHLTIAMKNGSMPRSYQNSA IPEANVHNNFTDNRAMRSNVSDKKPVAAPNKLEKKPSVDINESAEAFIKKFRHQLLLQ RLESIENYEQMLARGL" gene 13221700..13224879 /locus_tag="TCM_028278" /note="dbxref CacaoGD:Thecc1EG028278" mRNA join(13221700..13222397,13222843..13222932, 13223055..13223122,13224509..13224879) /locus_tag="TCM_028278" /product="Peptide deformylase 1A" /inference="alignment:exonerate- protein:2:ricco:29841.m002826" /inference="similar to AA sequence:Phytozome:POPTR_0001s17170.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06271t00001" CDS join(13221987..13222397,13222843..13222932, 13223055..13223122,13224509..13224749) /locus_tag="TCM_028278" /codon_start=1 /product="Peptide deformylase 1A" /protein_id="EOY26497.1" /db_xref="Phytozome:POPTR_0001s17170.1" /db_xref="TAIR:AT1G15390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FV53" /translation="MTSTATMEVLHRFSFRLLPVTLSLNTARLAPLYLSTQIPFNGPA FPNPTAHFSSWRPFSSSAVAKAGWFLGLGEKKKTSLPEIVKAGDPVLHEPAREIDPDE IGSELIQKIIDDMVRVMRMAPGVGLAAPQIGVPLKIIVLEDTTEYISYAPKEETKAQD RHPFDLLVIVNPKLKKKSNRTALFFEGCLSVEGFRAVVERHLDVEVTGLGRDGQPIKV DASGWQARILQHECDHLDGTLYVDKMVPRTFRAVQNLDLPLAEGCPKLGAR" gene complement(13225300..13230609) /locus_tag="TCM_028279" /note="dbxref CacaoGD:Thecc1EG028279" mRNA complement(join(13225300..13226053,13226695..13226811, 13226912..13227020,13227092..13227173,13228556..13228763, 13228895..13228915,13229003..13229173,13229293..13229424, 13230069..13230609)) /locus_tag="TCM_028279" /product="Pectin lyase-like superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29841.m002825" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005873t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17180.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06939t00001" CDS complement(join(13225772..13226053,13226695..13226811, 13226912..13227020,13227092..13227173,13228556..13228763, 13228895..13228915,13229003..13229173,13229293..13229424, 13230069..13230293)) /locus_tag="TCM_028279" /note="paralog of Thecc1EG005873t1" /codon_start=1 /product="Pectin lyase-like superfamily protein" /protein_id="EOY26498.1" /db_xref="Phytozome:POPTR_0001s17180.1" /db_xref="TAIR:AT1G80170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94AJ5" /translation="MKNLGFLGSCSTCTITVFICILMCSNVVVHAEGFHFDSRLLLPR SGSARTRPRAKRVLSVHDFGAKGDAHHNDTKAFQNAWKMACSFPARTRILIPAGYTYL IHPVELGGPCESKVTLMISGTIVAPEDPDVWDGLNPRKWLYFHGVNHLHVDGGGTING MGQEWWARSCKRKKTNPCRHAPTALTFHKCKNLKVHNLMVVNSQQMHIAFTNCLRVTV SNLKVIAPAASPNTDGIHISASRGVEVKNSIVRTGDDCVSIVSNSSRVKIRNIVCGPG HGISIGSLGKSKSWAQVHDVLVDGAFISNTENGVRIKTWQGGSGYAANIKFQNVLMEN VSYPIIIDQYYCDSTQPCANQTLAVKVDNISFAHIKGTSATEETIRFACSDSLPCEGL YLEDIQLVSYTGGIAKSFCWEAYGSSLGLLQPNSCLTCTDGFIKQKVPSGLAVDSL" mobile_element complement(13233003..13233062) /note="source:INTACT414_F210_scaffold_5-int 1839 1904" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13233019..13234398 /note="source:scaffold_1_CACTA_0024 4050 5992" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13234399..13235401 /note="source:INTACT460_F49_scaffold_8-int 1133 2139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13235402..13237336 /note="source:scaffold_1_CACTA_0024 5993 8721" /mobile_element_type="transposon:TIR/CACTA" gene complement(13241233..13241867) /locus_tag="TCM_028280" /note="dbxref CacaoGD:Thecc1EG028280" mRNA complement(13241233..13241867) /locus_tag="TCM_028280" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g03580.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06070.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g10490t00001" CDS complement(13241266..13241670) /locus_tag="TCM_028280" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26499.1" /db_xref="Phytozome:POPTR_0003s06070.1" /db_xref="TAIR:AT1G80180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWC8" /translation="MAGLQRSAVSFRRQGSSGLVWDDRFLSGELNQVKQEQEEGETKQ QLQQEEQGQLRDNNQEKVDVIKDVKPTRNIGPINTIERSRSNGERRGYRTGKVSPAIE PPSPKVSACGFCSAFGKQAKNHRKKPGKRRSR" mobile_element 13248015..13248117 /note="source:INTACT642F_F365_scaffold_5-int 19248 19350" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13248106..13249638 /note="source:INTACT700_F304_scaffold_7-int 14947 16497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13248111..13249838) /note="source:CACAO_M_E44210_F112_scaffold_5 11197 12914" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13248112..13250218 /note="source:CACAO_on_E205_scaffold_7 2151 4319" /mobile_element_type="transposon:TIR/Mutator" gene 13248647..13252159 /locus_tag="TCM_028281" /note="dbxref CacaoGD:Thecc1EG028281" mRNA join(13248647..13248767,13250253..13250623, 13250749..13250965,13251685..13252159) /locus_tag="TCM_028281" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage" CDS join(13248740..13248767,13250253..13250623, 13250749..13250965,13251685..13251698) /locus_tag="TCM_028281" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26500.1" /translation="MVLEPSHHTANSLGRRSARGLTSANSSLSSICRWPQGFPYGRLP NWWRHSPPGPALPSRIDRSSGETIGLLLSHSSPVDVNPLGTDRVLSLSSLCRVWWCDG RASSLSPFSCALSAFLSPTADRLLSTSQLPPVFEDFFSGLNAPPECYSAPSPLYPVLG LWRGHAPLPCLWALGGTFRYPTRLEFFTSGRVREVPGGVRSHPASQPSL" mobile_element 13250652..13251539 /note="source:CACAO_M_E58877_F5_scaffold_9 8080 8753" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13251169..13254568) /note="source:CACAO_M_E3935_F390_scaffold_1 10891 14288" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13251525..13253769) /locus_tag="TCM_028282" /note="dbxref CacaoGD:Thecc1EG028282" mRNA complement(join(13251525..13253084,13253181..13253769)) /locus_tag="TCM_028282" /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400024743.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004328t1" /inference="similar to AA sequence:Phytozome:Glyma06g23600.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc2797t1_G4" CDS complement(join(13252415..13253084,13253181..13253572)) /locus_tag="TCM_028282" /note="paralog of Thecc1EG004328t1" /codon_start=1 /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H" /protein_id="EOY26501.1" /db_xref="Phytozome:Glyma06g23600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q2J0" /translation="MNFFLEGNILYKRSRDQTLLRCVDSTEAWRIVEEVHEGVCGAHA SGHKLARQVMRAGYYWLTLETDCIDFARKCHKCQIYADKIHTPANSLHVLTSPWPFSM WGMDVIGLITPKASNGHRFILVAIDYFTKIITDNASNLNSSMMKEVCAKFKIKHHNST PYHPKMNGEVEAANKNIKRIIEKMTDVYKDWHEKLPFALHAYRTTVRTSTGATPFSLV YGMEAVLPIEVEIPSLRVLKEVQLEEAEWVNACYEQLNLIEEKRLTALCHGQLYQKRM IRAYGKKAHPRQFREGELVLKRILPNQHDPRGKWTLNWEGPFVVKKAFSGGALILAEM DGREFSNPVNADAVKKYFA" mobile_element 13254669..13257377 /note="source:INTACT1427F_F390_scaffold_9-int 6496 9204" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13257479..13258653 /note="source:CACAO_M_E12044_F76_scaffold_2 13355 14530" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13262731..13263478 /note="source:INTACT1427F_F390_scaffold_9-int 12427 13174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13266236..13266859) /note="source:INTACT666_F293_scaffold_9-int 16392 17017" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13266822..13267279 /note="source:CACAO_M_E49539_F76_scaffold_7 5097 5558" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13267862..13269404 /note="source:INTACT458_F219_scaffold_7-int 97 1383" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13273094..13282055 /locus_tag="TCM_028286" /note="dbxref CacaoGD:Thecc1EG028286" mRNA join(13273094..13273217,13273395..13273515, 13274143..13274180,13274503..13274639,13274940..13275028, 13278476..13278543,13280991..13281104,13281212..13281380, 13281724..13281873,13281965..13282055) /locus_tag="TCM_028286" /product="Partner of SLD five 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G80190.1" /inference="similar to AA sequence:TAIR:AT1G80190.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06942t00001" CDS join(13273441..13273515,13274143..13274180, 13274503..13274639,13274940..13275028,13278476..13278543, 13280991..13281104,13281212..13281380,13281724..13281873, 13281965..13281991) /locus_tag="TCM_028286" /codon_start=1 /product="Partner of SLD five 1" /protein_id="EOY26502.1" /db_xref="TAIR:AT1G80190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSC0" /translation="MHGRKAYELVKEFASGEKGHLKIFNVEEGSNVNFWLVLSGCITR QRNLCKRRLNPVLAMSPCSVILHTDESGKFPESRKSSSSGAHCIVVPVIFYTPGMMKC LRGVLFLPFIWNELFERVIEECNEHHNALQSLIRKMQEEGLEVQTARTADHYGALIHH LSLIRNKRCLMAYVYNRAEIIRDLAWKVGLLHELPREIQEKFSDSEEQYFKDHSKSLK LYMSQLSLDVNVDMVPPKDPYIKVRVLEDLGSGIILSDKFANFARHSMHFLKRTDAEQ YIARGLMEELTS" gene complement(13281619..13295487) /locus_tag="TCM_028287" /note="dbxref CacaoGD:Thecc1EG028287" mRNA complement(join(13281619..13281874,13281966..13284794, 13286723..13288140,13288568..13288723)) /locus_tag="TCM_028287" /product="LRR and NB-ARC domains-containing disease resistance protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s17210.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17210.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc855t4; alternateUTRof:Thecc1EG028287t1; inference alignment:Newbler:10:TSA:cgbaP2_g11879t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15840t1" mRNA complement(join(13282181..13284794,13286723..13287819, 13287991..13288140,13288568..13288996,13295163..13295487)) /locus_tag="TCM_028287" /product="LRR and NB-ARC domains-containing disease resistance protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s17210.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17210.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11879t00001" CDS complement(join(13282689..13284794,13286723..13287769)) /locus_tag="TCM_028287" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein isoform 1" /protein_id="EOY26503.1" /db_xref="Phytozome:POPTR_0001s17210.1" /translation="MDAFQAVASATQIISSMMGAVGALEQASRNLDEAPKKIRSLEEF VRDLENLTQRIRQKHSSKLHNAQLDYQIQSLHSLIERLRPNIRKARTIVSKSKIKNIA NVFWNSMAGDPLGKLTYSIKDDLNWWLETQMLAQNVEKVIESTAQDIPVRLKIKADQG HPISSKCNFVRDLLERGNSHRVILIVGLSGIGKSCLARQVASDPPKKFVGGAVELGFG QWCSRAACNGSKVEYQKRLARKISKFLVQIGFWKKIKEENSGDLDYVCCLLQEALYGK SILILLDDVWEQDIVQWFAKLYDNDCKYLVTTRNEAVYEITEAEKVELSKDEIREISK EILLYHSLLSKEELPIIAESLLERCGHHPLTVAVMGKALRKEVRVEKWEKAITNLSTF ATCAPGPVSYVNEKDAEDTLTIFGSFEFSLEAMPVDSKRLFIALAALSWAGPVPEACV EAVWSFLGQESLFSLIVCKLVEGSLLMKEDMDPLYQVHDMVSLYLDSKTTDSIEMLLH GSTPEKAAFICPWLFIFGKENVKKIVEQRMKLFFEILEEKQAVITLESIIEALMASNT ISELEASRASFSWILGPRIADIISTNSESLIAVSAEAIINIFSKTDYCNYFPSLETAS TVDKLASILESCEDPEIQTNILTILAKLAEFGSPEIVDKVLQSIPFNQLAYLLSPDAK EWHESMFTILMSLTIAGKSKAVERMFAFEIEKNLIKLIESGSEIVQHHAIVTLKAFYE LAGPSSNSSLQPANLDLLPWQVRLRLERFVMSDRNIPLSPKPQTFEDLIHKVLDYDNK QVLEAMQDLIPIIEKAGDPSFREMILQSPLIRRLSELLQSGHTEHNPVRSESAFLLMK LAYSGGEPCIKKFLECDVISELVKMMQCHIAELQDSAYTALHQMLFGNGGVLVLKKIF LMGLIRPIAHALESKSLKTREVNVHFILDIVEVGNKNCLEQMLSLQVVEKLTKLEKSG GGSGENLVGFLKGMDKCKHLSVAERKVMKQQVVRRVRTSLKGHKFEARTLAALDAFLS GGSRAASSSGSGRNRKLSKT" CDS complement(join(13282689..13284794,13286723..13287769)) /locus_tag="TCM_028287" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein isoform 1" /protein_id="EOY26504.1" /db_xref="Phytozome:POPTR_0001s17210.1" /translation="MDAFQAVASATQIISSMMGAVGALEQASRNLDEAPKKIRSLEEF VRDLENLTQRIRQKHSSKLHNAQLDYQIQSLHSLIERLRPNIRKARTIVSKSKIKNIA NVFWNSMAGDPLGKLTYSIKDDLNWWLETQMLAQNVEKVIESTAQDIPVRLKIKADQG HPISSKCNFVRDLLERGNSHRVILIVGLSGIGKSCLARQVASDPPKKFVGGAVELGFG QWCSRAACNGSKVEYQKRLARKISKFLVQIGFWKKIKEENSGDLDYVCCLLQEALYGK SILILLDDVWEQDIVQWFAKLYDNDCKYLVTTRNEAVYEITEAEKVELSKDEIREISK EILLYHSLLSKEELPIIAESLLERCGHHPLTVAVMGKALRKEVRVEKWEKAITNLSTF ATCAPGPVSYVNEKDAEDTLTIFGSFEFSLEAMPVDSKRLFIALAALSWAGPVPEACV EAVWSFLGQESLFSLIVCKLVEGSLLMKEDMDPLYQVHDMVSLYLDSKTTDSIEMLLH GSTPEKAAFICPWLFIFGKENVKKIVEQRMKLFFEILEEKQAVITLESIIEALMASNT ISELEASRASFSWILGPRIADIISTNSESLIAVSAEAIINIFSKTDYCNYFPSLETAS TVDKLASILESCEDPEIQTNILTILAKLAEFGSPEIVDKVLQSIPFNQLAYLLSPDAK EWHESMFTILMSLTIAGKSKAVERMFAFEIEKNLIKLIESGSEIVQHHAIVTLKAFYE LAGPSSNSSLQPANLDLLPWQVRLRLERFVMSDRNIPLSPKPQTFEDLIHKVLDYDNK QVLEAMQDLIPIIEKAGDPSFREMILQSPLIRRLSELLQSGHTEHNPVRSESAFLLMK LAYSGGEPCIKKFLECDVISELVKMMQCHIAELQDSAYTALHQMLFGNGGVLVLKKIF LMGLIRPIAHALESKSLKTREVNVHFILDIVEVGNKNCLEQMLSLQVVEKLTKLEKSG GGSGENLVGFLKGMDKCKHLSVAERKVMKQQVVRRVRTSLKGHKFEARTLAALDAFLS GGSRAASSSGSGRNRKLSKT" mobile_element 13292308..13292838 /note="source:CACAO_M_E58877_F5_scaffold_9 17824 18344" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13295165..13295818 /note="source:CACAO_M_E58877_F5_scaffold_9 8010 8679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13300154..13301533 /note="source:INTACT1427F_F390_scaffold_9-int 7670 9050" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13301634..13302520 /note="source:CACAO_M_E12044_F76_scaffold_2 13225 14112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13307098..13307961 /note="source:CACAO_M_E58877_F5_scaffold_9 17683 18537" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13308448..13308998 /note="source:CACAO_M_E58877_F5_scaffold_9 6451 6971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13309014..13309097) /note="source:INTACT345_F202_scaffold_1-int 1434 1517" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13310160..13310475 /note="source:CACAO_M_E58877_F5_scaffold_9 20403 20735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13313773..13314735 /note="source:INTACT204_F15_scaffold_7-int 1 957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13314736..13317072 /note="source:CACAO_M_E530_F323_scaffold_1 1 2340" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(<13315747..13372995) /locus_tag="TCM_028293" /note="dbxref CacaoGD:Thecc1EG028293" mRNA complement(join(<13315747..13315837,13371673..13372995)) /locus_tag="TCM_028293" /product="Galactose oxidase/kelch repeat superfamily protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g03590.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06050.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3148t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3148t3; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc866t5_C1" CDS complement(join(<13315749..13315837,13371673..13372729)) /locus_tag="TCM_028293" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein isoform 5" /protein_id="EOY26509.1" /db_xref="Phytozome:POPTR_0003s06050.1" /translation="MWSTLPFDVLAKIFSFLSPDSLACARSACRQWHTCARTYPSTLP QHHQAWFLALPTRNRGQCCYVHNPVVDKWHMLSLDFLPDPIRPVASIGTLILVRPTNC TILQLALCNPFTRQFKYLPMLNITRTNPAVGVVILEPGQPGPNPDFRVYVAGGMSEAP RGGATYEATLEMYDSVDDAWHIMGFMPVEFAVRLTVWTPNESVYSDGVLYWMTSARAY SVMGFHLGSHTWRELSVPMADRLEFAALLWRNGRLTLVGGTCGEDACIWELTEGDGWG LIEKVPIELGIKFLGGKRSWGSTKCVGSEGAICLYREFGSGMVVWREIEEKVRWEWFW VEGCHFIRDKQVQNLQIKEGVPWTSLLEGHGKLHYIITSNGEARRVSP" mobile_element 13317550..13317581 /note="source:CACAO_M_E58722_F323_scaffold_9 2814 2845" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13317554..13318615 /note="source:CACAO_M_E69737_F323_scaffold_9 2726 3787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13318716..13319598) /note="source:INTACT759_F323_scaffold_6-int 5842 6725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13319699..13320513 /note="source:CACAO_M_E22265_F82_scaffold_3 7468 8296" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13320504..13320545) /note="source:CACAO_on_S_E390_scaffold_9 10404 10445" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(13320654..13320920) /note="source:INTACT759_F323_scaffold_6-int 4367 4658" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13321021..13321471 /note="source:CACAO_M_E49759_F82_scaffold_7 5613 6065" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13330515..13338819 /note="source:INTACT527_F15_scaffold_5-int 1049 9359" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13337604..13338819) /note="source:scaffold_4_CACTA_0493 9417 10619" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13338820..13341683 /note="source:CACAO_M_E48306_F15_scaffold_6 1 2864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13341684..13343099 /note="source:CACAO_M_E52654_F15_scaffold_7 1448 2853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13345094..13345946) /note="source:INTACT444_F216_scaffold_4-int 2015 2884" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13347032..13358024) /locus_tag="TCM_028292" /note="dbxref CacaoGD:Thecc1EG028292" mRNA complement(join(13347032..13347581,13349435..13349710, 13349902..13351735,13351841..13352511,13352644..13352978, 13353051..13353289,13353815..13354288,13355021..13355090, 13355949..13356032,13357563..13358024)) /locus_tag="TCM_028292" /product="DNA/RNA polymerases superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009998t1" /inference="similar to AA sequence:Phytozome:Glyma04g32860.1" /note="quality class is strong-expresste, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.49 coverage" mRNA complement(join(13347157..13347350,13355949..13356032, 13371673..13372995)) /locus_tag="TCM_028293" /product="Galactose oxidase/kelch repeat superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g03590.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06050.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3148t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3148t3" CDS complement(join(13347532..13347581,13349435..13349710, 13349902..13351735,13351841..13352511,13352644..13352978, 13353051..13353289,13353815..13354282)) /locus_tag="TCM_028292" /note="paralog of Thecc1EG009998t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein" /protein_id="EOY26510.1" /db_xref="Phytozome:Glyma04g32860.1" /translation="MPPRRGRPPLTRSVGRGRGRSQRHQPDTVEEESAASTIRAAPAA EQADSPPHPPSPQPPTGIPAMPTEAAQALTAFFAAMAGQAQTGQVSLVVLSTTPLAPP PVQDVSISKKLKEARQLGCVFFTGELDATVAKDWINQVSEALSDMGLDDDMKLMQRPS RFSRSAMTDFGKSSGGSDRCKNCENYHSGLCRGPTRCFQCGQTGHIRSNCPQLGRATV AASSPPARTDMQMRDSSRPQTRTATRVFAVTEDEARVRPGAVTGAMSLFDKDAYVLID SGSDRSYVSTTFASIADKNLSPLEGEIVVHTPLGEQLIRNTCYRDCGVRVAEEEFRGD LIPLEILDFDLIFAIKASKLVQKGYPAYLAYVIDTSNGEPKLEDVPIVSEFPDVFPDD LPRLPPDRELEFPIDLLSGTAPISIPPYRMAPAELKELKVQLQDLVDKGFIRPSISPW GAPVLFVKKKDGTLRLCIDYRQLNRVTIKNKYPLPWIDDLFDQLRGAMVFSKIDLRSG YYQLRIKEQDVPKTAFRTRYGHYEFLVMLFGLTNAPAVFMDLMNRVFHPYLDKFVIVF IDDILLKEVVFLGHVVSGAGIYVDPKKIEAILQWEQPRTVTEIRSFLGLVGYYRRFVQ RFSLIAAPLTRLTRKGVKFEWDDVCENRFQELKNRLTSAPILTLSVSEKEFVVYSDAP KLGLGCVLMQDEKVIAYASRQLMKHETNYLTHDLELAAVVFALKIWRHYLYGERCRIF FDHKSLKYLLTQKELNLRQRRWLELIKDYDLVIDYHPGKANVVTDALSRKSSSSLATL RSSYFPMLLEMKSLGIQLNNGEDGTLLASFVVRPSLLNQIRELQKFDDWLKQEVQKLQ DGEASEFRLSDDGTLMLRDRICVPKDDQLRRAILEEAHSSAYALHPGSTKMYQTIKES YWWPGMKRDIAEFVAKCLICQQIKAEHQKSSGTLQPLPIPEWKWEHVTMDFVLGLPRT QSGKDAIWVIMGRLTKSAHFLAIHSTYSIERLARLYIDEVVRLHGVPVSIVSDRDPRF TSRFWPKFQEALGTKLRFSTAFHPQIDGQSERTIQTLEDMLRACVIDFIRSWDRHLPL VEFAYNNSFQSSIGMATYEALYGRKCRTPLCWDEVGERKLVNVELIDLTNDKVKVIRE RLKTAQDRQKNYSDKRRKDLEFEVDDKVFLKVPPWKDLDRIHNVFHISMLKKYVPDPS HILETPPIELHEDLKFEVKPVRILDRKNRVLKNKSIPMVKVLWKNARMEEMTWEVESQ MRNQYPHIFFESGCLGQGVPENGFMAQA" mRNA complement(join(<13348752..13348774,13371673..13372995)) /locus_tag="TCM_028293" /product="Galactose oxidase/kelch repeat superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g03590.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06050.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is medium, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3148t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3148t3; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc866t5_C1" CDS complement(join(<13348752..13348774,13371673..13372729)) /locus_tag="TCM_028293" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein isoform 3" /protein_id="EOY26507.1" /db_xref="Phytozome:POPTR_0003s06050.1" /translation="MWSTLPFDVLAKIFSFLSPDSLACARSACRQWHTCARTYPSTLP QHHQAWFLALPTRNRGQCCYVHNPVVDKWHMLSLDFLPDPIRPVASIGTLILVRPTNC TILQLALCNPFTRQFKYLPMLNITRTNPAVGVVILEPGQPGPNPDFRVYVAGGMSEAP RGGATYEATLEMYDSVDDAWHIMGFMPVEFAVRLTVWTPNESVYSDGVLYWMTSARAY SVMGFHLGSHTWRELSVPMADRLEFAALLWRNGRLTLVGGTCGEDACIWELTEGDGWG LIEKVPIELGIKFLGGKRSWGSTKCVGSEGAICLYREFGSGMVVWREIEEKVRWEWFW VEGCHFIRDKQVQNLQIKGTKISSSS" mRNA complement(join(13354897..13355090,13371673..13372995)) /locus_tag="TCM_028293" /product="Galactose oxidase/kelch repeat superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g03590.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06050.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3148t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3148t3; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc866t5_C1" CDS complement(join(13355080..13355090,13371673..13372729)) /locus_tag="TCM_028293" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein isoform 2" /protein_id="EOY26506.1" /db_xref="Phytozome:POPTR_0003s06050.1" /translation="MWSTLPFDVLAKIFSFLSPDSLACARSACRQWHTCARTYPSTLP QHHQAWFLALPTRNRGQCCYVHNPVVDKWHMLSLDFLPDPIRPVASIGTLILVRPTNC TILQLALCNPFTRQFKYLPMLNITRTNPAVGVVILEPGQPGPNPDFRVYVAGGMSEAP RGGATYEATLEMYDSVDDAWHIMGFMPVEFAVRLTVWTPNESVYSDGVLYWMTSARAY SVMGFHLGSHTWRELSVPMADRLEFAALLWRNGRLTLVGGTCGEDACIWELTEGDGWG LIEKVPIELGIKFLGGKRSWGSTKCVGSEGAICLYREFGSGMVVWREIEEKVRWEWFW VEGCHFIRDKQVQNLQIKGSV" CDS complement(join(13355986..13356032,13371673..13372729)) /locus_tag="TCM_028293" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein isoform 1" /protein_id="EOY26505.1" /db_xref="Phytozome:POPTR_0003s06050.1" /translation="MWSTLPFDVLAKIFSFLSPDSLACARSACRQWHTCARTYPSTLP QHHQAWFLALPTRNRGQCCYVHNPVVDKWHMLSLDFLPDPIRPVASIGTLILVRPTNC TILQLALCNPFTRQFKYLPMLNITRTNPAVGVVILEPGQPGPNPDFRVYVAGGMSEAP RGGATYEATLEMYDSVDDAWHIMGFMPVEFAVRLTVWTPNESVYSDGVLYWMTSARAY SVMGFHLGSHTWRELSVPMADRLEFAALLWRNGRLTLVGGTCGEDACIWELTEGDGWG LIEKVPIELGIKFLGGKRSWGSTKCVGSEGAICLYREFGSGMVVWREIEEKVRWEWFW VEGCHFIRDKQVQNLQIKGGESSDKGKEIASKD" mobile_element 13357010..13357485 /note="source:CACAO_M_E44425_F33_scaffold_6 17668 18088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13357604..13358686) /note="source:CACAO_M_E49857_F85_scaffold_7 22796 23879" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(13358025..13358217,13371673..13372995)) /locus_tag="TCM_028293" /product="Galactose oxidase/kelch repeat superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g03590.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06050.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3148t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3148t3; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc866t5_C1" CDS complement(join(13358192..13358217,13371673..13372729)) /locus_tag="TCM_028293" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein isoform 4" /protein_id="EOY26508.1" /db_xref="Phytozome:POPTR_0003s06050.1" /translation="MWSTLPFDVLAKIFSFLSPDSLACARSACRQWHTCARTYPSTLP QHHQAWFLALPTRNRGQCCYVHNPVVDKWHMLSLDFLPDPIRPVASIGTLILVRPTNC TILQLALCNPFTRQFKYLPMLNITRTNPAVGVVILEPGQPGPNPDFRVYVAGGMSEAP RGGATYEATLEMYDSVDDAWHIMGFMPVEFAVRLTVWTPNESVYSDGVLYWMTSARAY SVMGFHLGSHTWRELSVPMADRLEFAALLWRNGRLTLVGGTCGEDACIWELTEGDGWG LIEKVPIELGIKFLGGKRSWGSTKCVGSEGAICLYREFGSGMVVWREIEEKVRWEWFW VEGCHFIRDKQVQNLQIKGSGNSIVS" mobile_element complement(13367466..13368760) /note="source:CACAO_M_E49857_F85_scaffold_7 1 1314" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13376150..13378733) /locus_tag="TCM_028294" /note="dbxref CacaoGD:Thecc1EG028294" mRNA complement(join(13376150..13376812,13376951..13377191, 13378649..13378733)) /locus_tag="TCM_028294" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS complement(join(13376542..13376812,13376951..13377051)) /locus_tag="TCM_028294" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26511.1" /translation="MYASLRLLKLTCCLQNGSQVHSVPFKSEIPKILSRGPDLTQIQS NFSRSTRSSAPKIDAPYRALDLCSLVSITLGAPHPRSTTQSVLPGSTHNGEHQFGCSL PWVRSTPLSAPFGEGRFGHEI" gene 13379111..13380757 /locus_tag="TCM_028295" /note="dbxref CacaoGD:Thecc1EG028295" mRNA join(13379111..13379323,13380043..13380274, 13380423..13380757) /locus_tag="TCM_028295" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g22490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG047096t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06040.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3014t1" CDS join(13379232..13379323,13380043..13380274, 13380423..13380671) /locus_tag="TCM_028295" /note="paralog of Thecc1EG047096t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26512.1" /db_xref="Phytozome:POPTR_0003s06040.1" /db_xref="TAIR:AT5G11280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWD1" /translation="MASSRKWASFISCIASFMYFLLIIFQIPLFRVPCRFGICKTPIE VTSSQLIASELFPTYVVKVLLYPGAIANAIIKNRSLPSYGKLLKLYNLTNVRKPPAAS DLQRLEILAGSYLAVVGAFVSLLRHERMSLFGTMLITWGLLREIIMVPTKAIHMYPTM IVAMVCASLSVRRDVRKLIHSCKARRVKIL" gene 13384160..13387243 /locus_tag="TCM_028296" /note="dbxref CacaoGD:Thecc1EG028296" mRNA join(13384160..13384407,13384551..13384591, 13384670..13384739,13384887..13385583,13386699..13387243) /locus_tag="TCM_028296" /product="Aspartate-glutamate racemase family" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038032t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s06030.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc755t10" CDS join(13384259..13384407,13384551..13384591, 13384670..13384739,13384887..13385583,13386699..13386983) /locus_tag="TCM_028296" /note="paralog of Thecc1EG038032t2" /codon_start=1 /product="Aspartate-glutamate racemase family" /protein_id="EOY26513.1" /db_xref="Phytozome:POPTR_0003s06030.2" /db_xref="TAIR:AT1G15410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XI28" /translation="MSRKSSELGTFALFTLPLLIFASFCLVSSFELRRLREGSPPGFV SWVLLRLKVDQVGLLASSAISESWNFVGGYQNVEMVPIFGLLSLQMSLNSPSYIWGCV TTQRNFCKRRLDPVLAMSPSSVILHTDESGKFPESKKSSSSGTASLIGSAGTLLSHPN TVGIIGGVSVDSTLNFVRKLVHWSKENEKNCMPFVLCSDPVLNRELLSLERNSASLCH RNEHSQFDHTRIVENLWSKRVFLEKSGAHCIVVPCHISHSWHDEVFKGCSVPSLHMGE CVARELKEAKLKPLETGSPLRIGVLATDATLKEGFYQEKLQNEGFEVVLPDKATMEHT VIPAIDALNRKDMEGARNLLRIALQVLLVRAVNTVILASDDMRDLLPRDDPLVKKCID PMDALARSTIKWAQQAVEEGT" gene complement(13388379..13392927) /locus_tag="TCM_028297" /note="dbxref CacaoGD:Thecc1EG028297" mRNA complement(join(13388379..13391546,13392620..13392927)) /locus_tag="TCM_028297" /product="Cc-nbs-lrr resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017267001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027187t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s32030.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc717t11" CDS complement(13388791..13391523) /locus_tag="TCM_028297" /note="paralog of Thecc1EG027187t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative" /protein_id="EOY26514.1" /db_xref="Phytozome:POPTR_0001s32030.1" /db_xref="TAIR:AT5G63020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGA8" /translation="MGGLCSVSISIENTISFCCNHAAKHASYACRLGKHLDVLETKME ELKALRNDVKRRVENAERQHMKRLDQVEWWLSRVEALEGEVEDLMKESVNEKKCPGCC YPKNCRASYKLGKKAAEMLKKVRRHRKKGQFERVAETLPPAPGDLKPCEHTVGMESMI ATVWNCLSEEQAVIIGLYGMGGIGKTTLLTQINNMLLSLPSNVDFVIWAVASKDLKLE KIQDEIGEKLGYSDNRWRNKRIEQKAIDIYRVLSNRKFVLLLDDLWDRVDLTKIGVPI PDQQNNSKVVFTTRSKEVCGLMEAHKRFRVECLPPPFAWHLFQRKVGNDTLNLHPDIP KLAETVAKECAGLPLALITVGRAMACKKTPKEWIRAIEVLRKCASEFSGMGDKVFPLL KFSFDHLPNEKVRCCFLYCTLFPEDFVIHKTDLIDYWICEELLDEGNDRNGAQNQGYD IIGTLVYACLLEEEGDYVKMHDVIRDMSLWIANECKYFEERFLVQAGVRLVEAPGIKK WETVRRISLMANCVQSLMETPSCPNLLTLFLNENTLNTITNDFFQSMPNLRVLDLSSN SGISELPQGISKLVSLKYLNLSKTSIRQLPNELKSLEKLEYLNLEHTFALNTIPCQLI SSFPFLQVLRMFGCGSSDLVVHGNLLSGGNECLVQELQCLKKLSMLSLTVKSASALEG FLSSHKFKSCARDLCLEFLSGSNVLNISCLADMKQLNMLEISDCNSLEELKHDWLQEP RKILTSIDFHSSMILKDRCFNNLQRVSVDNCIRLGDLTWLMLAPNLASLCVSRCSQIK EIISTAKCGRLAEVLLGSIKPFEKLEVLHLSYLPELKCIYQDPLPFLSLKKISIFGCP KLKKLPVNVQNAEGHGIAIYGWEFWWKELEWDDETTKNAFVPCFKSMPLNISLQ" gene complement(13392942..13396745) /locus_tag="TCM_028298" /note="dbxref CacaoGD:Thecc1EG028298" mRNA complement(13392942..13396745) /locus_tag="TCM_028298" /product="Cc-nbs-lrr resistance protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028306t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s32030.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc935t1" gene 13393080..13472089 /locus_tag="TCM_028299" /note="dbxref CacaoGD:Thecc1EG028299" mRNA join(13393080..13393946,13472024..13472089) /locus_tag="TCM_028299" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is medium, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc935t3_C1" CDS 13393575..13393775 /locus_tag="TCM_028299" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26516.1" /translation="MFDKHRKNKTKSEIWLELLHRQYNKHLVNIEKAASNHTTPETMR APTTYQKTKIHHISLLFNFAVE" CDS complement(13393756..13396473) /locus_tag="TCM_028298" /note="paralog of Thecc1EG028306t2" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative" /protein_id="EOY26515.1" /db_xref="Phytozome:POPTR_0001s32030.1" /db_xref="TAIR:AT1G12220.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGA8" /translation="MGNIFSIQLSCDTIFSRCWDCSAGQAIYTCRLEENLADLKTALN KLMELRNDVMRKVNIAEQGNMKRLDQVEGWLSRTEAMINEVDQLITDSPQEIKKLCMG GCFSKNYMSSLRFSKRVAKKLNDVKDLNLDGAFKEVATTVPAALVVERPSDSAIGLES IFNTLWSSFEEKHVGIIGIYGIGGVGKTRLLTQINNKIGVSSGGFEVVIWVVVSKGFY VDKVQDDIADRIGLSSGTWNDKTPEQKATEMFGVLKKKKFVLLLDDIWERVNLSKVGI PYPTQENGSKLIFTTRSIEVCGQMRADKKIEVTCLPEEKAWQLFEEHVGKDLFDSHPN IRDLAQEVAKECGGLPLALITIGRSMACKTTSEEWKYAIDVLRRSSATSISPDMGKEV YPHLKFSYDSLPNDMVRSCLLYCSLFSEDFRIEKERLIDCWIGEGFLDEHDNISQARN QGHHIIGSLIHACLLEEASDWFVKMHDVIRDMCLWIACTCEAEKWKFFVQAGYQLTKV PNVGKWRGIKRMSLMDNKIENLREAPNCPDLQTLFLSGNKPLEVIDNDFFQFMCVLKV LDLSFNRGITEFPKGISKLVSLEYLDLSGTTIRELPTELRALKKLKCLGLQHIDNRIK IPRGLMAGFSKLEILRMFSYYPFDEAVEDDNECLVEELQCLNHLNVLTLSVTSAFALD RFLSAEKLHNFIETIGLQYFKDSKQLNILSLANFKSLNTLFLEECESLEEVKTVWEGE GRIIKAAIEIQTSVIASVPCFQNLLHVYIVRCSKLRDITWLILAPNLKDLIVIDCDKM EEIINETKLSQVAELVRTLSPFSKLEGLHLIRLPELKSICLDALPFSCMKSIRVRECP KLRSLPLNSNSAKGNKISIYGEEKWWKELQWEDESTQNAFLRSFIPRRN" mobile_element 13398298..13400460 /note="source:CACAO_M_E12105_F316_scaffold_3 3378 5544" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13403373..13403504) /note="source:INTACT414_F210_scaffold_5-int 10312 10437" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13407812..13410739 /note="source:INTACT190_F166_scaffold_7-int 3755 6679" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(13416856..13418875) /locus_tag="TCM_028302" /note="dbxref CacaoGD:Thecc1EG028302" mRNA complement(join(13416856..13417468,13417604..13417997, 13418809..13418875)) /locus_tag="TCM_028302" /product="NAC domain containing protein 82, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01027475001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028313t1" /inference="similar to AA sequence:ricco:30136.m001048" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage" CDS complement(join(13416976..13417468,13417604..13417863)) /locus_tag="TCM_028302" /note="dbxref ricco:30136.m001048; paralog of Thecc1EG028313t1" /codon_start=1 /product="NAC domain containing protein 82, putative" /protein_id="EOY26517.1" /db_xref="TAIR:AT5G09330.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RU40" /translation="MERNSLAPGFRFHPTDVELCQYYLRRKVLGKKFSFEAIAEVDIY KYAPWDLRDESLLRIGDLKWYFFCPMEKKYGKWSRFNRATAYGLEDEPLLDKGVVQDA YILCVIFCKDGPGHRNGAQYGAPFREEDLTDDEEVIKEVSNSTDLPTPTFTGAARPCF PQSQCLGSPAESSHFAASPSVVLDANKSLTPMEASQVLVDDSISAMLSSGQSEDYSPV AIANDDLEFLESPEIAVDDEIMSLLATLNVIT" mobile_element 13419312..13420282 /note="source:scaffold_1_CACTA_0006 1 887" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13422431..13422738 /note="source:CACAO_M_E84368_F4_scaffold_10 1 310" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13423977..13424929 /note="source:CACAO_M_E84368_F4_scaffold_10 306 1249" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13426520..13427446 /note="source:scaffold_1_CACTA_0006 1 1048" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13427595..13430148) /note="source:scaffold_9_CACTA_0938 637 3297" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13429675..13431270 /note="source:scaffold_2_CACTA_0279 563 2147" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13431271..13434205 /note="source:CACAO_M_E48312_F247_scaffold_6 1 2935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13434206..13440071) /note="source:scaffold_5_CACTA_0606 261 6176" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13454910..13457532) /note="source:CACAO_M_S_E99488_F231_scaffold_9 1 2687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13457765..13459284) /note="source:CACAO_M_S_E19607_F7_scaffold_3 1476 2992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13459124..13459308 /note="source:scaffold_4_CACTA_0494 12216 12393" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13459282..13467972) /note="source:INTACT636_F7_scaffold_5-int 1 8688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13468119..13468651) /note="source:CACAO_M_S_E64608_F12_scaffold_5 4127 4669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13468207..13468753 /note="source:CACAO_M_E35674_F13_scaffold_5 7753 8264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13468846..13469790 /note="source:CACAO_M_E35674_F13_scaffold_5 8271 9212" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13471006..13499045) /locus_tag="TCM_028306" /note="dbxref CacaoGD:Thecc1EG028306" mRNA complement(join(13471006..13471332,13471808..13474648, 13479987..13481088,13498835..13499045)) /locus_tag="TCM_028306" /product="Disease resistance protein family, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s32030.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028298t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s32030.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:PASA:2:TSA:puevd3b027381t1a2; alternateUTRof:Thecc1EG028306t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3039t2" mRNA complement(join(13471006..13471332,13471800..13474648, 13479987..13481088,13498835..13499045)) /locus_tag="TCM_028306" /product="Disease resistance protein family, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s32030.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028298t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s32030.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3039t2" CDS complement(join(13471840..13474648,13479987..13480564)) /locus_tag="TCM_028306" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG028298t1" /codon_start=1 /product="Disease resistance protein family, putative isoform 1" /protein_id="EOY26518.1" /db_xref="Phytozome:POPTR_0001s32030.1" /db_xref="TAIR:AT1G12220.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGA8" /translation="MTKLWGVLKLWSSTEGKPHEERTDWVLHKYRLEDEHLHDKGVVQ DAYVLCVIFRKDGPGHRNGAQYGAPFREDWTDEEEVIKEVSNSADLPTPTFTGAANPY FPQSQCLGSSAESSHFAAFPSVVLNANKSLTPMEASQVLVDDSISAMLSSGQSEDYSL VAIANYDLEFLKSPNIVVDDDTFREDDAFLIDIIKRLLLILFFLPLFKHSVFFSTGDY ICSCFSTMGNIFSIQLSCDTIFSRCWDCAAGQAIYTCKLEENLADLNTALDELKERRN DVMRKVNIAEQGNMKQLDQVQGWLSRTEAMINDVDQVITDGPQEIKKLCMGGCFSKNY MSSLRFSKTVSKKLRDVKDLNLKGAFEEVATTVPAALVVERPSDSAIGLESMLNTVWS SFEEKHVGIIGIYGLGGVGKTRLLTEINNRIGLSSGGFEVVIWVVVSKGFYVEKVQDD IAKRIGLSGGTWNDKTPEEKATEIFGVLTKKKFVLLLDDIWERVDLSKVGIPSPTQEN GSKLIFTTRSIEVCGQMRADKKIEVTCLPEEKAWQLFEEHVGKDLFDSHPNIRDLAQE VAKECGGLPLALITIGRSMACKTTSEEWKYAIDVLRRSSATSISPDMGKEVYPLLKFS YDSLPNDMVRSCLLYCSLFSEDFMIKKERLIECWIGEGFLDEHDNISQARNQGHHIIG SLIHACLLEEVEDEFVKMHDVIRDMCLWIACTCEAEKWKFFVQARYQLTKVPDVGKWR GIKRMSLMDNKIENLREAPNCPDLQTLFLSRNKPLEVINNDFFQFMCVLKVLDLSYNQ GITEFPMGISKLVSLEYLDLSGTTIRELPTELRALKKLKCLGLQHIDNGIKIPRGLMP GFSKLEILRMFRSYPFDEAMEDDNECLAEELQCLNHLNVLTLSVTSAFALDRFLSAEK LHSFIETIGLEYFKDSKQLNILSLANFKSLNTLTLGECESLEEVKTVWEGESRIIKAA IEIQTSVIASVPCFQSLLRVYMAKCSKLRDITWLILAPNLKDLHVMDCDKMEEIIDEI KLRQGAELVKTLSPFSRLKYLCLVSLPELKSIYLDALPFSCMESIGVRDCPKLRRLPL NSNSAKAKKISINGEEKWWKELQWEDESTQNAFLPSFIPW" CDS complement(join(13471840..13474648,13479987..13480564)) /locus_tag="TCM_028306" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG028298t1" /codon_start=1 /product="Disease resistance protein family, putative isoform 1" /protein_id="EOY26519.1" /db_xref="Phytozome:POPTR_0001s32030.1" /db_xref="TAIR:AT1G12220.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGA8" /translation="MTKLWGVLKLWSSTEGKPHEERTDWVLHKYRLEDEHLHDKGVVQ DAYVLCVIFRKDGPGHRNGAQYGAPFREDWTDEEEVIKEVSNSADLPTPTFTGAANPY FPQSQCLGSSAESSHFAAFPSVVLNANKSLTPMEASQVLVDDSISAMLSSGQSEDYSL VAIANYDLEFLKSPNIVVDDDTFREDDAFLIDIIKRLLLILFFLPLFKHSVFFSTGDY ICSCFSTMGNIFSIQLSCDTIFSRCWDCAAGQAIYTCKLEENLADLNTALDELKERRN DVMRKVNIAEQGNMKQLDQVQGWLSRTEAMINDVDQVITDGPQEIKKLCMGGCFSKNY MSSLRFSKTVSKKLRDVKDLNLKGAFEEVATTVPAALVVERPSDSAIGLESMLNTVWS SFEEKHVGIIGIYGLGGVGKTRLLTEINNRIGLSSGGFEVVIWVVVSKGFYVEKVQDD IAKRIGLSGGTWNDKTPEEKATEIFGVLTKKKFVLLLDDIWERVDLSKVGIPSPTQEN GSKLIFTTRSIEVCGQMRADKKIEVTCLPEEKAWQLFEEHVGKDLFDSHPNIRDLAQE VAKECGGLPLALITIGRSMACKTTSEEWKYAIDVLRRSSATSISPDMGKEVYPLLKFS YDSLPNDMVRSCLLYCSLFSEDFMIKKERLIECWIGEGFLDEHDNISQARNQGHHIIG SLIHACLLEEVEDEFVKMHDVIRDMCLWIACTCEAEKWKFFVQARYQLTKVPDVGKWR GIKRMSLMDNKIENLREAPNCPDLQTLFLSRNKPLEVINNDFFQFMCVLKVLDLSYNQ GITEFPMGISKLVSLEYLDLSGTTIRELPTELRALKKLKCLGLQHIDNGIKIPRGLMP GFSKLEILRMFRSYPFDEAMEDDNECLAEELQCLNHLNVLTLSVTSAFALDRFLSAEK LHSFIETIGLEYFKDSKQLNILSLANFKSLNTLTLGECESLEEVKTVWEGESRIIKAA IEIQTSVIASVPCFQSLLRVYMAKCSKLRDITWLILAPNLKDLHVMDCDKMEEIIDEI KLRQGAELVKTLSPFSRLKYLCLVSLPELKSIYLDALPFSCMESIGVRDCPKLRRLPL NSNSAKAKKISINGEEKWWKELQWEDESTQNAFLPSFIPW" mobile_element 13476743..13479691 /note="source:CACAO_M_E48316_F72_scaffold_6 1 2949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13479570..13479706 /note="source:scaffold_5_CACTA_0611 5897 6031" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13482587..13483412 /note="source:CACAO_M_E69760_F9_scaffold_9 11946 12761" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13484776..13484792) /note="source:INTACT405F_F91_scaffold_4-int 7604 7619" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13484793..13488109 /note="source:CACAO_M_E48320_F207_scaffold_6 1 3317" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13492564..13493057 /note="source:CACAO_M_E56826_F244_scaffold_8 4225 4719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13493420..13494212) /note="source:CACAO_M_E11669_F244_scaffold_2 1144 1934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13495364..13495523) /note="source:scaffold_4_CACTA_0503 3237 3396" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13501940..13503795) /note="source:INTACT61_F128_scaffold_2-int 10184 11661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13503921..13506094 /note="source:INTACT157_F155_scaffold_1-int 3855 6102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13506347..13508333 /note="source:INTACT157_F155_scaffold_1-int 6227 8254" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13508325..13511532 /note="source:INTACT157_F155_scaffold_1-int 8368 14465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13512793..13514001) /note="source:INTACT61_F128_scaffold_2-int 1 1062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13514909..13515322) /note="source:CACAO_Again_on_E205_scaffold_9 3076 3487" /mobile_element_type="transposon:TIR/hAT" mobile_element 13515423..13517075 /note="source:CACAO_M_E33422_F33_scaffold_4 401 2054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13517501..13517954 /note="source:CACAO_M_E58843_F33_scaffold_9 2409 2882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13517787..13527639 /note="source:CACAO_Mariner_E176_scaffold_6 1 9853" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 13527473..13530285 /note="source:CACAO_M_E48326_F87_scaffold_6 1 2813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13530286..13530341 /note="source:CACAO_Mariner_E176_scaffold_6 2218 2275" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 13531969..13534170 /locus_tag="TCM_028310" /note="dbxref CacaoGD:Thecc1EG028310" mRNA join(13531969..13532147,13532764..13533008, 13533504..13534170) /locus_tag="TCM_028310" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(13532856..13533008,13533504..13533554) /locus_tag="TCM_028310" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26520.1" /translation="MDFVQVANQIFVPQTKYAKDLLKRFKMELYELVPTPLSISDKLC KNDGAAKHDRTKHIRLSIMRLEK" mobile_element 13535530..13535639 /note="source:CACAO_Mariner_E176_scaffold_6 3178 3287" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(13536318..13537640) /locus_tag="TCM_028311" /note="dbxref CacaoGD:Thecc1EG028311" mRNA complement(join(13536318..13536738,13536832..13537459, 13537588..13537640)) /locus_tag="TCM_028311" /product="NAC domain containing protein 82" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400054265" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028313t1" /inference="similar to AA sequence:ricco:30136.m001048" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.20 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc2312t2" CDS complement(join(13536451..13536738,13536832..13537353)) /locus_tag="TCM_028311" /note="dbxref ricco:30136.m001048; paralog of Thecc1EG028313t1" /codon_start=1 /product="NAC domain containing protein 82" /protein_id="EOY26521.1" /db_xref="TAIR:AT5G64060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RU40" /translation="MFCSMEKNSLPPGFRFHPTDVELLQYYLRRKVLGKKFSFEAIAE VDIYKYAPWDLPHKSLLRTGDLKWYFFCPMEKKYGKGSKFNRATTYGYWETTRKDRPV RYNDKVVGSIKLWSSIEGKPHEEREQIRFCTNTDLTRELYRRLPFFVLSSARMVQAIE TVPNMEHHLERRIRSQCLGSPAESSHFAASPSVVLDANKSLTPMEASQVLVDDSVSAM LSSGQSEDYSPVAITNDDLEFLESPDIVVDDEIMSLLATCRADDTLNSLMF" gene complement(13539693..13541437) /locus_tag="TCM_028312" /note="dbxref CacaoGD:Thecc1EG028312" mRNA complement(join(13539693..13539951,13540645..13541437)) /locus_tag="TCM_028312" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400054265" /inference="similar to AA sequence:Phytozome:POPTR_0003s06010.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1551t1" CDS complement(join(13539728..13539951,13540645..13541206)) /locus_tag="TCM_028312" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY26522.1" /db_xref="Phytozome:POPTR_0003s06010.1" /translation="MLSNYNMNISRDANEPMLQWWPQHPIQGKDIETSCLIEYPSFKK RRICENFFANPSILVAMEEVASGSFKARQCGPKWKEFADDSKKLCRMFCNGRNCSYGG RCRFLHVIPDKFRDISMINIVPGAGPVSQNRGSGELDCKGSVGSLSVGNEGVPKQASW KTKLCNNWKMTGGCAYGKACCYAHGETELQKLHGHFALESWSVPTFAWKDVHKNGNGI GNHIKQQLQETKGSLKRKEIVKLCDIYADWIEDMTTLPTPSYK" mRNA complement(join(<13539922..13539943,13540645..13541433)) /locus_tag="TCM_028312" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400054265" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is medium, protein is partial3; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1551t4; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1551t1" CDS complement(join(<13539924..13539943,13540645..13541206)) /locus_tag="TCM_028312" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY26523.1" /translation="MLSNYNMNISRDANEPMLQWWPQHPIQGKDIETSCLIEYPSFKK RRICENFFANPSILVAMEEVASGSFKARQCGPKWKEFADDSKKLCRMFCNGRNCSYGG RCRFLHVIPDKFRDISMINIVPGAGPVSQNRGSGELDCKGSVGSLSVGNEGVPKQASW KTKLCNNWKMTGGCAYGKACCYAHGETEASWPFC" gene complement(13542563..13544057) /locus_tag="TCM_028313" /note="dbxref CacaoGD:Thecc1EG028313" mRNA complement(join(13542563..13543832,13543930..13543959, 13544047..13544057)) /locus_tag="TCM_028313" /product="NAC domain containing protein 82, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400054265" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028302t1" /inference="similar to AA sequence:ricco:30136.m001048" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc2312t1" CDS complement(13542859..13543764) /locus_tag="TCM_028313" /note="dbxref ricco:30136.m001048; paralog of Thecc1EG028302t1" /codon_start=1 /product="NAC domain containing protein 82, putative" /protein_id="EOY26524.1" /db_xref="TAIR:AT5G64060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RU40" /translation="MEKNSLAPGFRFHPTDVELLQYYLRRKVLGKKFSFEAIAEVDIY KYAPWDLPHKSLLRIGDLKWYFFCPMKKKYGKGSRFNRATPYGFWKTTGKDRPVRYND KVVGSIRTLVFHRGKAPRGDRTDWVLHEYRLEDEHLLDEGVVQDDYVLCVIFCKDGPG HRNGAQYGAPFREEDWTDDEEVIKEVFNSTDLPTPTFTTASPCFPQSQCLGSPAESSH FAASPSVVLDADKSLTSMEASQVLVDDSISAMLSAGQSEDYSPVAIANDDLEFLESPD IAVDDEIMSLLATFREDDTLNSLML" gene complement(13545606..13551075) /locus_tag="TCM_028314" /note="dbxref CacaoGD:Thecc1EG028314" mRNA complement(join(13545606..13545940,13546038..13546083, 13546251..13546319,13546657..13546719,13546787..13547029, 13547184..13547243,13547616..13547695,13548844..13549026, 13549653..13549817,13550864..13550893)) /locus_tag="TCM_028314" /product="Single hybrid motif superfamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene05864" /inference="similar to AA sequence:Phytozome:GSVIVT01017253001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc373t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc373t8; inference alignment:Newbler:10:TSA:cgbaL_g11702t00001" mRNA complement(join(13545679..13545940,13546038..13546083, 13546251..13546319,13546657..13546719,13546787..13547029, 13547184..13547243,13547616..13547695,13548844..13549026, 13550864..13551075)) /locus_tag="TCM_028314" /product="Single hybrid motif superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05864" /inference="similar to AA sequence:Phytozome:GSVIVT01017253001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11702t00001; inference alignment:Newbler:10:TSA:cgbaL_g11702t00001" CDS complement(join(13545870..13545940,13546038..13546083, 13546251..13546319,13546657..13546719,13546787..13547029, 13547184..13547243,13547616..13547695,13548844..13549026, 13550864..13550873)) /locus_tag="TCM_028314" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Single hybrid motif superfamily protein isoform 1" /protein_id="EOY26525.1" /db_xref="Phytozome:GSVIVT01017253001" /db_xref="TAIR:AT3G15690.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKX5" /translation="MASCGIGAPNIKVPKLSFGKARVDKLKLNNVRIWTRQRTMQYAG LVRHSEKTFNIGCGPTLQTLATTNLADDFEETKMSGLTSQLIPNSSGVESLVRDICDT TSVAEFELKLGGFRLYIMRDLAGKSEPPPAIPSPPPVSVSTSKTVEAPDSNGSVSTPT LAITKPLSSSGRIQLLLDKAADEGLVILQSPKVGFFRRSRTIKGKRAPPSCKEKQTVK EGQVLCYIEQLGGEIPIESDVSGEVIKILRDDGDPVGYGDALIALLPSFPGIKKLQ" CDS complement(join(13545870..13545940,13546038..13546083, 13546251..13546319,13546657..13546719,13546787..13547029, 13547184..13547243,13547616..13547695,13548844..13549026, 13549653..13549728)) /locus_tag="TCM_028314" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Single hybrid motif superfamily protein isoform 2" /protein_id="EOY26526.1" /db_xref="Phytozome:GSVIVT01017253001" /db_xref="TAIR:AT3G15690.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKX5" /translation="MHTLMQCGETCLFLLLYFDSDMHTPGGIGAPNIKVPKLSFGKAR VDKLKLNNVRIWTRQRTMQYAGLVRHSEKTFNIGCGPTLQTLATTNLADDFEETKMSG LTSQLIPNSSGVESLVRDICDTTSVAEFELKLGGFRLYIMRDLAGKSEPPPAIPSPPP VSVSTSKTVEAPDSNGSVSTPTLAITKPLSSSGRIQLLLDKAADEGLVILQSPKVGFF RRSRTIKGKRAPPSCKEKQTVKEGQVLCYIEQLGGEIPIESDVSGEVIKILRDDGDPV GYGDALIALLPSFPGIKKLQ" gene complement(13553258..13562363) /locus_tag="TCM_028315" /note="dbxref CacaoGD:Thecc1EG028315" mRNA complement(join(13553258..13553573,13556632..13556895, 13557001..13557112,13557591..13557946,13558069..13558242, 13562230..13562363)) /locus_tag="TCM_028315" /product="Ran BP2/NZF zinc finger-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29841.m002811" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038384t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s05990.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07667t00001" mobile_element 13553751..13554910 /note="source:INTACT135F_F90_scaffold_2-int 12864 14003" /mobile_element_type="retrotransposon:LTR/Copia" mRNA complement(join(13556534..13556895,13557001..13557112, 13557591..13557953)) /locus_tag="TCM_028315" /product="Ran BP2/NZF zinc finger-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29841.m002811" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038384t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s05990.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc335t1; alternateUTRof:Thecc1EG028315t1; inference alignment:Newbler:10:TSA:cgbaP1_g07667t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc335t3" CDS complement(join(13557022..13557112,13557591..13557937)) /locus_tag="TCM_028315" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG038384t1" /codon_start=1 /product="Ran BP2/NZF zinc finger-like superfamily protein isoform 1" /protein_id="EOY26527.1" /db_xref="Phytozome:POPTR_0003s05990.2" /db_xref="TAIR:AT3G15680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LW11" /translation="MSRPGDWNCRSCQHLNFQRRDSCQRCGESRSGDFGSYGGRGGSS FGFTTGSDVRPGDWYCTAGNCGTHNFASRSSCFKCGAFKDDSAGGFDSDIPRSRGFGG NRSGWKSGDWICTRSGCNEHNFASRMECFRCSAPRDFNNRTSY" CDS complement(join(13557022..13557112,13557591..13557937)) /locus_tag="TCM_028315" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG038384t1" /codon_start=1 /product="Ran BP2/NZF zinc finger-like superfamily protein isoform 1" /protein_id="EOY26528.1" /db_xref="Phytozome:POPTR_0003s05990.2" /db_xref="TAIR:AT3G15680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LW11" /translation="MSRPGDWNCRSCQHLNFQRRDSCQRCGESRSGDFGSYGGRGGSS FGFTTGSDVRPGDWYCTAGNCGTHNFASRSSCFKCGAFKDDSAGGFDSDIPRSRGFGG NRSGWKSGDWICTRSGCNEHNFASRMECFRCSAPRDFNNRTSY" mobile_element 13564909..13567477 /note="source:scaffold_5_CACTA_0585 7018 11514" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13567788..13567862) /note="source:scaffold_8_CACTA_0860 229 308" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13568261..13568317 /note="source:CACAO_M_E47740_F12_scaffold_6 1055 1111" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13569355..13569462 /note="source:scaffold_8_CACTA_0860 2382 2499" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13569377..13569494) /note="source:INTACT180_F13_scaffold_3-int 5672 5781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13573393..13573454) /note="source:CACAO_M_E86361_F7_scaffold_15 7502 7573" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13573425..13573486) /note="source:scaffold_4_CACTA_0497 1191 1251" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13573620..13573707 /note="source:CACAO_M_E65050_F7_scaffold_9 7100 7185" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13577022..13579160) /note="source:INTACT33_F7_scaffold_5-int 6580 8287" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13579161..13582956 /note="source:CACAO_M_E48331_F246_scaffold_6 1 2945" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13583286..13583858 /note="source:scaffold_2_CACTA_0260 3898 4471" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13584212..13585865) /note="source:INTACT358_F204_scaffold_9-int 1427 3081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13585860..13586539) /note="source:INTACT470_F80_scaffold_3-int 6480 7160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13587489..13588917) /note="source:CACAO_M_E56710_F44_scaffold_8 7724 9124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13593496..13594876) /note="source:INTACT103_F9_scaffold_4-int 570 1935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13598253..13599056) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13601161..13602656) /note="source:CACAO_M_E71671_F17_scaffold_10 9371 10888" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13603414..13605632) /locus_tag="TCM_028318" /note="dbxref CacaoGD:Thecc1EG028318" mRNA complement(join(13603414..13604279,13604600..13604691, 13605047..13605632)) /locus_tag="TCM_028318" /product="Ribonuclease H-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042327t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(13603550..13604279,13604600..13604691, 13605047..13605601)) /locus_tag="TCM_028318" /note="paralog of Thecc1EG042327t1" /codon_start=1 /product="Ribonuclease H-like protein" /protein_id="EOY26529.1" /translation="MYNICQLQKKASYYMNNRSALQKVLSFLQEYEQVSGQQINHQKS CFITANSCPLSRRQIISHTTGFQHKILPVTYLGAPLYKGLKKVILFYSLITKIRDRVS GWENKVLSSGGCITLLRSVLSSLSMYLLQVPKPSATVIEKIEWHFNSFLWGDSTKSKK MHKAAWSKSTFPCSERGLDIRYLNDIPFDRSQEDVAYWALTSNGELSTWSAWEEVRVI SALIPLFICWFLWLERNDAKHRHLGMYPDRVVWETMKLLRQLHDGSPLKQWQWKVDKD IAAMWSFLFPPKHGTTPQIIHWVKPFTGEYKLNVDGSSRNCQSATSGGLLRDHIGKLV FGFSENIGRCNSLQAELRALLRRLLLCKEQHIERLWIEMDALVVIQMIHQYQKGSHDI RYLLTSIRKGLSSISYRILHIFREGNQAAYFLSNQGYTHQNLCLITEAQGELHGMLKL DRLNLPYV" mobile_element 13606857..13608763 /note="source:scaffold_5_CACTA_0585 9700 11615" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13608764..13609837) /note="source:CACAO_M_S_E14847_F12_scaffold_2 12125 13203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13609837..13610009 /note="source:scaffold_5_CACTA_0585 11610 11823" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13610513..13610611 /note="source:scaffold_8_CACTA_0860 11571 11670" /mobile_element_type="transposon:TIR/CACTA" gene complement(13613599..13615422) /locus_tag="TCM_028319" /note="dbxref CacaoGD:Thecc1EG028319" mRNA complement(join(13613599..13614257,13614679..13614960, 13615020..13615422)) /locus_tag="TCM_028319" /product="Kinase PINOID 2, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038023t1" /inference="similar to AA sequence:Phytozome:Glyma17g12620.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(13613945..13614257,13614679..13614960, 13615020..13615291)) /locus_tag="TCM_028319" /note="paralog of Thecc1EG038023t1" /codon_start=1 /product="Kinase PINOID 2, putative" /protein_id="EOY26530.1" /db_xref="Phytozome:Glyma17g12620.1" /db_xref="TAIR:AT2G26700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94E49" /translation="MLCQILILSHNAILSSSRNQTSSSFGSHIRHTFSCSHKPHKGNH PAWVAINRLLLEHGHVELEHFRLFHRVGSGSMRNVYLCLNTSGSFIEFDAHCLYAMKV LDTDALRVSNKLHKAAIERKILGMFDHLFLPTLHAEFDCCQYSCLVMEYCPGGDLLTF LQRESNMRFSIPTAKKVFILLKLLRFYAAEVLVALDYLHMMGVIYRDLKPENVFVQED GHIMLSDVDLSLTCNVSPKLIKFKTNTMDNNRNCNSHLPILSSMKKKKTASNVEIILQ VEMHKSDVEIWG" gene 13616611..13622072 /locus_tag="TCM_028320" /note="dbxref CacaoGD:Thecc1EG028320" mRNA join(13616611..13616695,13617272..13617461, 13617543..13617686,13617827..13618024,13621688..13622072) /locus_tag="TCM_028320" /product="Transducin/WD40 repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s17450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028419t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17450.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3055t1" CDS join(13617322..13617461,13617543..13617686, 13617827..13618016) /locus_tag="TCM_028320" /note="paralog of Thecc1EG028419t1" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein" /protein_id="EOY26531.1" /db_xref="Phytozome:POPTR_0001s17450.1" /db_xref="TAIR:AT3G15610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSS7" /translation="MLWDLRSGKIVQTLETKSPVTSAEVSQDGRHITTADGSNVKFWD ANHFALVKSYYMPCSVESASLEPKHGNKFIAGGEDMWVHVFDFHTGEEIVRLQQGSPC MVLSTVCSSPGGESYASGSEDGTIRIWQTGSGNHEKNDSVPPNGPSGRVKASCGC" gene complement(13618723..13619652) /locus_tag="TCM_028321" /note="dbxref CacaoGD:Thecc1EG028321" mRNA complement(join(13618723..13618867,13619512..13619652)) /locus_tag="TCM_028321" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3529t1" CDS complement(join(13618848..13618867,13619512..13619620)) /locus_tag="TCM_028321" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26532.1" /translation="MSCCVETILPYPTATASALLTSMLSVSRRSSGWTPEGQDKTR" gene 13619747..13624268 /locus_tag="TCM_028322" /note="dbxref CacaoGD:Thecc1EG028322" mRNA join(13619747..13619851,13622076..13622896, 13623914..13624268) /locus_tag="TCM_028322" /product="F-box family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028415t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13272t00001" CDS 13622320..13622856 /locus_tag="TCM_028322" /note="paralog of Thecc1EG028415t1" /codon_start=1 /product="F-box family protein" /protein_id="EOY26533.1" /translation="MQLGANPSPVLRIFGSCNGLLAVCHSEQGVIALWNPSTRKCHYL PTPGDDIMDHDIVPRYWYSDNTVLGFGYDVCNSDYKVVKMLRSKTQNCFKVMVYSLKA KSWRIKDCPYGNPRDFIDGAYVNGALYWVGDEIGKISRGKLIFTFDLGTEEYYVIFEG DIRFRKEKCGYDGTIFIK" gene complement(13624270..13631901) /locus_tag="TCM_028325" /note="dbxref CacaoGD:Thecc1EG028325" mRNA complement(join(13624270..13624453,13625627..13625755, 13626117..13626351,13626734..13626788,13626869..13626949, 13627051..13627209,13627504..13627688,13628532..13628750, 13628845..13628930,13629656..13629792,13630156..13630331, 13631601..13631901)) /locus_tag="TCM_028325" /product="Mov34/MPN/PAD-1 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g44030.1" /inference="similar to AA sequence:Phytozome:Glyma15g01310.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05955t00001" mRNA complement(join(13625431..13625755,13626117..13626351, 13626734..13626788,13626869..13626949,13627051..13627209, 13627504..13627688,13628532..13628750,13628845..13628930, 13629656..13629743,13630206..13630331,13631601..13631838)) /locus_tag="TCM_028325" /product="Mov34/MPN/PAD-1 family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g44030.1" /inference="similar to AA sequence:Phytozome:Glyma15g01310.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00843t00001; inference alignment:Newbler:10:TSA:cgbaB_g05955t00001" mRNA complement(join(13626117..13626788,13626869..13626949, 13627504..13627688,13628532..13628750,13628845..13628930, 13629656..13629743,13630206..13630331,13631601..13631823)) /locus_tag="TCM_028325" /product="Mov34/MPN/PAD-1 family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g44030.1" /inference="similar to AA sequence:Phytozome:Glyma15g01310.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc36t43_C1; inference alignment:Newbler:10:TSA:cgbaB_g05955t00001" CDS complement(join(13626151..13626351,13626734..13626788, 13626869..13626949,13627051..13627209,13627504..13627688, 13628532..13628750,13628845..13628930,13629656..13629743, 13630206..13630331,13631601..13631711)) /locus_tag="TCM_028325" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Mov34/MPN/PAD-1 family protein isoform 2" /protein_id="EOY26535.1" /db_xref="Phytozome:Glyma15g01310.1" /db_xref="TAIR:AT1G80210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKX7" /translation="MSLTCVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEYSKDGNV TALIWGASPQSRSDRRKDRVETNPEQLAAASAQADRMTASTGRTTRVIGWYHSHPHIT VLPSHVDVRTQAMYQLLDSGFIGLIFSCFSEDTNKVGRIQVIAFQSSDGKQSHASGPV ALSPVNRSSVIDLESSLSSSENPLVTLGSAKVDSPLQDTGDSRLTLVSSKGGGRSVDL GGFFANADANYLGREQSEGNYNASNIQNAVVDIDPMDMSESMQEAMHRSNMDMSGAEY VRKEIPLHVLPTSSLVNLDSPLMSFTDLQRVLYEEERAAYNQAILQNMRDGKVHPLSF IHHTSTYQASMCKLIEYCLSPAINALQDRLKENEIRLAMLTDEAKTLETEAVRGSGPS SPHHASSHGFRGSAFVGQRELHNSAESISMRTYAGPGSRSRKRS" CDS complement(join(13626151..13626351,13626734..13626788, 13626869..13626949,13627051..13627209,13627504..13627688, 13628532..13628750,13628845..13628930,13629656..13629792, 13630156..13630331,13631601..13631711)) /locus_tag="TCM_028325" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Mov34/MPN/PAD-1 family protein isoform 1" /protein_id="EOY26534.1" /db_xref="Phytozome:Glyma15g01310.1" /db_xref="TAIR:AT1G80210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKX7" /translation="MSLTCVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEYSKDGNV TALIWGASPQSRSDRRKDRVETNPEQLAAASAQADISLVFVQLFHLGFKIICDMFEVV SFVVKLTSRHRMTASTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLI FSCFSEDTNKVGRIQVIAFQSSDGKQSHASGPVALSPVNRSSVIDLESSLSSSENPLV TLGSAKVDSPLQDTGDSRLTLVSSKGGGRSVDLGGFFANADANYLGREQSEGNYNASN IQNAVVDIDPMDMSESMQEAMHRSNMDMSGAEYVRKEIPLHVLPTSSLVNLDSPLMSF TDLQRVLYEEERAAYNQAILQNMRDGKVHPLSFIHHTSTYQASMCKLIEYCLSPAINA LQDRLKENEIRLAMLTDEAKTLETEAVRGSGPSSPHHASSHGFRGSAFVGQRELHNSA ESISMRTYAGPGSRSRKRS" CDS complement(join(13626563..13626788,13626869..13626949, 13627504..13627688,13628532..13628750,13628845..13628930, 13629656..13629743,13630206..13630331,13631601..13631711)) /locus_tag="TCM_028325" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Mov34/MPN/PAD-1 family protein isoform 3" /protein_id="EOY26536.1" /db_xref="Phytozome:Glyma15g01310.1" /db_xref="TAIR:AT1G80210.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKX7" /translation="MSLTCVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEYSKDGNV TALIWGASPQSRSDRRKDRVETNPEQLAAASAQADRMTASTGRTTRVIGWYHSHPHIT VLPSHVDVRTQAMYQLLDSGFIGLIFSCFSEDTNKVGRIQVIAFQSSDGKQSHASGPV ALSPVNRSSVIDLESSLSSSENPLVTLGSAKVDSPLQDTGDSRLTLVSSKGGGRSVDL GGFFANADANYLGREQSEGNYNASNIQNAVVDIDPMDMSESMQEAMHRSNMDMRDGKV HPLSFIHHTSTYQASMCKLIEYCLSPAINALQDRLKENEIRVQNETELFGIAGSPNFN IAQIKVTFSVRLAYLSYFWTFPYYELQTPCTNFVRELSC" mobile_element complement(13634394..13634952) /note="source:CACAO_M_E11406_F324_scaffold_2 2444 3008" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13634943..13636574) /note="source:CACAO_M_E5899_F5_scaffold_2 2920 4564" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13636677..13637774) /note="source:INTACT407F_F356_scaffold_4-int 5259 6352" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13637738..13637771) /note="source:CACAO_Again_on_E14_scaffold_1 4037 4067" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(13637772..13637964) /note="source:CACAO_M_E43781_F323_scaffold_5 3266 3457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13638233..13639871 /note="source:CACAO_M_E12225_F323_scaffold_3 463 2102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13639972..13641283 /note="source:CACAO_M_E589_F323_scaffold_1 2160 3465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13641284..13641394) /note="source:CACAO_M_E5899_F5_scaffold_2 1719 1813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13641371..13643825) /note="source:CACAO_M_E10340_F324_scaffold_2 1 2456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13644523..13654817 /note="source:CACAO_M_S_E83601_F14_scaffold_6 1 10281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13656525..13656801 /note="source:INTACT88_F12_scaffold_4-int 11543 11817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13659522..13660641) /note="source:CACAO_M_E35511_F5_scaffold_5 8743 9888" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13661478..13661579) /note="source:CACAO_M_E69551_F193_scaffold_9 232 337" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13661483..13661639 /note="source:CACAO_M_E5702_F90_scaffold_2 743 901" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13666814..13668262 /note="source:INTACT26_F13_scaffold_9-int 2412 3853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13668380..13669235) /note="source:CACAO_M_E56674_F14_scaffold_8 3637 4498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13669236..13679849 /note="source:INTACT759_F323_scaffold_6-int 1 10614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13679850..13682001) /note="source:CACAO_M_S_E100361_F7_scaffold_9 1 2157" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13685257..13685300 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3191 3234" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13685262..13685306) /note="source:CACAO_M_S_E122136_F76_scaffold_10 13657 13701" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13688100..13688913) /locus_tag="TCM_028329" /note="dbxref CacaoGD:Thecc1EG028329" mRNA complement(join(13688100..13688416,13688549..13688653, 13688804..13688913)) /locus_tag="TCM_028329" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G52680.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3072t1" CDS complement(join(13688285..13688416,13688549..13688653, 13688804..13688866)) /locus_tag="TCM_028329" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26537.1" /translation="MASRTAQNIGNQGGDITGQAQVKKDETMNQASQGTNTQSSDQNS SIASQATNFLQQTGEQVKNMAQGAADAVKNTLGMNNDNSSNAPSTNHPSNPSPRT" gene 13691010..13692577 /locus_tag="TCM_028330" /note="dbxref CacaoGD:Thecc1EG028330" mRNA join(13691010..13691079,13691702..13692577) /locus_tag="TCM_028330" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031640t1" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.10 coverage" CDS join(13691051..13691079,13691702..13691978) /locus_tag="TCM_028330" /note="paralog of Thecc1EG031640t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26538.1" /translation="MDSSTTMVDWGASTVAPRESGQRRPSRHQIRHRLGENRLDPRRK EELAGGEGTRPLTPPDLSPEGRADPGQLRRHRLGKPAVRVHRREISCRLTAKGSSPA" mobile_element 13693291..13694117 /note="source:INTACT405F_F91_scaffold_4-int 17264 18092" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13696161..13696596) /note="source:CACAO_M_E57101_F8_scaffold_8 2161 2600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13697871..13698466) /note="source:CACAO_M_E57101_F8_scaffold_8 2161 2757" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13700749..13708661) /locus_tag="TCM_028331" /note="dbxref CacaoGD:Thecc1EG028331" mRNA complement(join(13700749..13701682,13708645..13708661)) /locus_tag="TCM_028331" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038319t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage" CDS complement(13701202..13701609) /locus_tag="TCM_028331" /note="paralog of Thecc1EG038319t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26539.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B5G7" /translation="MSSAGFDRIKFVLVEALHRHTQSLLHKSLVSETRIDLPHICYSH ISDIIEKRRWETFCAQLEAAVILVVREFYANVVEHENGVAFGRGKRVPFDSHTINRFY GTPNLENDEYTQYSNGEVDLEEVISLLGNLRTT" mobile_element 13702591..13706338 /note="source:INTACT20_F8_scaffold_7-int 5072 8861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13706349..13709303) /note="source:CACAO_M_S_E100361_F7_scaffold_9 1 2996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13717982..13720503) /note="source:CACAO_M_E1384_F245_scaffold_1 460 2981" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13720498..13720936) /note="source:CACAO_M_S_E38262_F319_scaffold_4 2202 2640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13720912..13721034 /note="source:CACAO_M_E57097_F245_scaffold_8 5935 6055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13720927..13721064 /note="source:scaffold_4_CACTA_0494 7491 7628" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13721170..13722305 /note="source:CACAO_M_E57097_F245_scaffold_8 7542 8678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13722304..13724471) /note="source:CACAO_M_S_E38262_F319_scaffold_4 13847 16052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13724465..13724524 /note="source:CACAO_M_E43590_F7_scaffold_5 9206 9264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13724471..13724939) /note="source:CACAO_M_E57883_F245_scaffold_9 1 469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13725549..13726537) /note="source:INTACT584_F15_scaffold_3-int 10302 11289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13726922..13727631) /note="source:CACAO_M_E22265_F82_scaffold_3 5063 5773" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13730870..13734165) /note="source:INTACT139F_F15_scaffold_2-int 3420 6806" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13734266..13735176) /note="source:CACAO_M_E44265_F33_scaffold_5 1469 2379" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13737479..13738132) /note="source:CACAO_M_E53088_F15_scaffold_8 1 668" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13747458..13748464 /locus_tag="TCM_028336" /note="dbxref CacaoGD:Thecc1EG028336" mRNA join(13747458..13747557,13747777..13747912, 13747974..13748464) /locus_tag="TCM_028336" /product="Late embryogenesis abundant protein D-7, putative" /inference="alignment:exonerate- protein:2:ricco:29841.m002806" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g17796t00001" CDS join(13747497..13747557,13747777..13747912, 13747974..13748250) /locus_tag="TCM_028336" /codon_start=1 /product="Late embryogenesis abundant protein D-7, putative" /protein_id="EOY26540.1" /translation="MCGMNKWLWECCNDARQSGIGGKMASHEQSYRAGKAEGRARVVY YYSHSFNIVCLVNFHWQKLEFWGEQMKDKAEAAKHKTFEATQEAKDKTYQTGQAAKES AESAKEKTGGILQQTGETVMNKAQGAAVAVKHTFGMADADEDEDNYPSRRDTSNY" gene 13750846..13754499 /locus_tag="TCM_028337" /note="dbxref CacaoGD:Thecc1EG028337" mRNA join(13750846..13751000,13751083..13751169, 13752441..13752531,13753628..13753728,13754117..13754499) /locus_tag="TCM_028337" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1810t4_C2" CDS join(13750998..13751000,13751083..13751169, 13752441..13752524) /locus_tag="TCM_028337" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26541.1" /translation="MTSGGLEAAEGTCGYVGVWVALSCVIPYWHYILPYLSQKPRPLL QLEVEKRHLEARK" mobile_element complement(13751168..13751735) /note="source:CACAO_M_E4753_F17_scaffold_2 7215 7818" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13755056..13755979 /locus_tag="TCM_028338" /note="dbxref CacaoGD:Thecc1EG028338" mRNA join(13755056..13755355,13755507..13755979) /locus_tag="TCM_028338" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025989t2" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3101t1" CDS join(13755305..13755355,13755507..13755854) /locus_tag="TCM_028338" /note="paralog of Thecc1EG025989t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26542.1" /translation="MAVFFFHRFGLNRYQNMGRRVRAIRVRLAKKRRAIRRMRQSLSA LQIAAEQIDRRNERIIAENALIDQLVYDLLAEIENDPLMRSAVEAIRAQNLDGRNIIT NQAPPPRGGADDGRKWCVGGLYYARGGGGA" gene complement(13757037..13762153) /locus_tag="TCM_028339" /note="dbxref CacaoGD:Thecc1EG028339" mRNA complement(join(13757037..13757883,13757977..13758051, 13759416..13759527,13760418..13760500,13760592..13760839, 13761930..13762153)) /locus_tag="TCM_028339" /product="Utp12, putative isoform 3" /inference="alignment:exonerate-protein:2:frave:gene24725" /inference="similar to AA sequence:Phytozome:POPTR_0003s05960.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc457t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3204t2" mRNA complement(join(13757053..13757883,13757977..13758051, 13759416..13759527,13760418..13760500,13760592..13760839, 13761419..13761527,13761930..13762127)) /locus_tag="TCM_028339" /product="Utp12, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene24725" /inference="similar to AA sequence:Phytozome:GSVIVT01017246001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3204t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3204t2" CDS complement(join(13757695..13757883,13757977..13758051, 13759416..13759527,13760418..13760500,13760592..13760839, 13761419..13761503)) /locus_tag="TCM_028339" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Utp12, putative isoform 1" /protein_id="EOY26543.1" /db_xref="Phytozome:GSVIVT01017246001" /db_xref="TAIR:AT1G15420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HX93" /translation="MENRIRKSNKKRAADDPDVATTRGINYTGHGENVDGVLDDDLNE PTMGEKLASLNLVENGKTESHEKQEREESSPLAKPPIADSVNVLLKQALHADDHALLL DCLYTQDEKVIANSVSQLNPSDVLQLLQSLISIIQSRGAVLACALPWIKSLLLQHASG IMSQASSLRALNSLYQLIESRVSTFKSALQISSCLDFLYAGIVEDEFDENATIPVIFE DKDESDEEESEDAMETDQGSEDGEALDDEAFDGVSDFEGIDDMSD" CDS complement(join(13757695..13757883,13757977..13758051, 13759416..13759527,13760418..13760500,13760592..13760786)) /locus_tag="TCM_028339" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Utp12, putative isoform 3" /protein_id="EOY26545.1" /db_xref="Phytozome:POPTR_0003s05960.1" /db_xref="TAIR:AT1G15420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HX93" /translation="MGEKLASLNLVENGKTESHEKQEREESSPLAKPPIADSVNVLLK QALHADDHALLLDCLYTQDEKVIANSVSQLNPSDVLQLLQSLISIIQSRGAVLACALP WIKSLLLQHASGIMSQASSLRALNSLYQLIESRVSTFKSALQISSCLDFLYAGIVEDE FDENATIPVIFEDKDESDEEESEDAMETDQGSEDGEALDDEAFDGVSDFEGIDDMSD" mRNA complement(join(13757859..13758051,13759416..13759527, 13760418..13760500,13760592..13760839,13761419..13761527, 13761930..13762122)) /locus_tag="TCM_028339" /product="Utp12, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene24725" /inference="similar to AA sequence:Phytozome:GSVIVT01017246001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc450t5_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3204t2" CDS complement(join(13757887..13758051,13759416..13759527, 13760418..13760500,13760592..13760839,13761419..13761503)) /locus_tag="TCM_028339" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Utp12, putative isoform 2" /protein_id="EOY26544.1" /db_xref="Phytozome:GSVIVT01017246001" /db_xref="TAIR:AT1G15420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HX93" /translation="MENRIRKSNKKRAADDPDVATTRGINYTGHGENVDGVLDDDLNE PTMGEKLASLNLVENGKTESHEKQEREESSPLAKPPIADSVNVLLKQALHADDHALLL DCLYTQDEKVIANSVSQLNPSDVLQLLQSLISIIQSRGAVLACALPWIKSLLLQHASG IMSQASSLRALNSLYQLIESRVSTFKSALQISSCLDFLYAGVCFLLKFVAGGILQVNL GFIWYCFFSQFL" mobile_element 13761945..13762253 /note="source:INTACT405F_F91_scaffold_4-int 15174 15503" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13763265..13764662 /note="source:INTACT405F_F91_scaffold_4-int 16610 18093" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13763829..13775899 /note="source:INTACT556_F252_scaffold_2-int 2100 14113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13775950..13776000 /note="source:INTACT556_F252_scaffold_2-int 14139 14191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13776007..13776049) /note="source:INTACT1427F_F390_scaffold_9-int 3590 3633" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13776050..13776100) /note="source:INTACT1427F_F390_scaffold_9-int 3590 3642" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13776109..13776165 /note="source:INTACT556_F252_scaffold_2-int 14071 14124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13776255..13776292) /note="source:INTACT1427F_F390_scaffold_9-int 3594 3632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13776307..13776349) /note="source:INTACT1427F_F390_scaffold_9-int 3590 3633" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13776424..13776524) /note="source:INTACT1427F_F390_scaffold_9-int 2965 3065" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13776506..13777035 /note="source:INTACT405F_F91_scaffold_4-int 14967 15503" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13777994..13778294 /note="source:CACAO_M_S_E38315_F276_scaffold_4 20846 21109" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13778507..13779898 /note="source:INTACT405F_F91_scaffold_4-int 16610 18091" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13780828..13786979) /note="source:CACAO_M_S_E85473_F233_scaffold_7 3880 10067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13786980..13789625 /note="source:CACAO_M_S_E64608_F12_scaffold_5 2951 5572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13788041..13794819) /note="source:CACAO_M_S_E84376_F22_scaffold_6 8222 16487" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13789889..13795150 /note="source:INTACT789_F335_scaffold_1-int 2796 8093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13795151..13796724) /note="source:INTACT1223F_F374_scaffold_6-int 9805 11347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13796725..13800442) /note="source:CACAO_M_S_E65247_F233_scaffold_5 1 3708" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13802043..13802317 /note="source:INTACT88_F12_scaffold_4-int 11547 11817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13805759..13807218 /note="source:INTACT160_F4_scaffold_7-int 13348 14683" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13807871..13808573) /note="source:INTACT423_F7_scaffold_6-int 5184 5877" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13809582..13809861) /note="source:CACAO_M_E10603_F306_scaffold_2 8226 8504" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13809862..13812800 /note="source:CACAO_M_E48368_F7_scaffold_6 1 2939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13813970..13814121 /note="source:CACAO_M_E5627_F4_scaffold_2 11933 12077" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13814140..13815633 /note="source:INTACT160_F4_scaffold_7-int 13340 14105" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13815626..13818596) /note="source:CACAO_M_E10603_F306_scaffold_2 4815 7774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13818595..13819132 /note="source:INTACT160_F4_scaffold_7-int 14072 14610" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13819133..13820447) /note="source:CACAO_M_E52882_F369_scaffold_8 980 2694" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13820775..13822233) /note="source:CACAO_M_S_E100128_F369_scaffold_9 1 1455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13824404..13828509) /note="source:INTACT714_F310_scaffold_9-int 7826 11394" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13828590..13832247) /note="source:INTACT714_F310_scaffold_9-int 4097 7789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13832231..13834438) /note="source:INTACT160_F4_scaffold_7-int 12781 14947" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13839181..13839245) /note="source:CACAO_M_S_E19828_F19_scaffold_3 13044 13108" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13839363..13840076) /note="source:CACAO_M_S_E19828_F19_scaffold_3 144 859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13847141..13849182 /note="source:CACAO_M_E49885_F60_scaffold_7 15 2053" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13847256..13855035) /note="source:scaffold_8_CACTA_0858 1404 9174" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13850825..13856315 /note="source:CACAO_M_E49885_F60_scaffold_7 6427 11877" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13856316..13869294 /note="source:INTACT263_F12_scaffold_6-int 1 12979" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13869295..13869406) /note="source:scaffold_8_CACTA_0858 7543 7652" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13869295..13869370) /note="source:CACAO_M_E50032_F60_scaffold_7 6747 6820" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13878082..13881039) /note="source:scaffold_6_CACTA_0711 3580 6596" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13882049..13882227 /note="source:INTACT261_F189_scaffold_2-int 12396 12588" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13882825..13882972) /note="source:CACAO_M_S_E64832_F14_scaffold_5 4210 4344" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13885332..13887612 /note="source:CACAO_M_E12347_F245_scaffold_3 1 2323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13887714..13888475 /note="source:CACAO_M_E50804_F245_scaffold_7 2517 3278" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13888576..13890252 /note="source:CACAO_M_E10479_F245_scaffold_2 3160 4835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13890253..13892519 /note="source:CACAO_M_E71568_F73_scaffold_10 1 2264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13892517..13892837) /note="source:CACAO_M_E10243_F73_scaffold_2 1 321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13892838..13897551 /note="source:CACAO_M_E10479_F245_scaffold_2 4831 9481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13897521..13897560 /note="source:CACAO_M_E48701_F73_scaffold_6 1818 1857" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13897552..13897657) /note="source:CACAO_M_E3248_F5_scaffold_1 6164 6270" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13898960..13901524 /locus_tag="TCM_028350" /note="dbxref CacaoGD:Thecc1EG028350" mRNA join(13898960..13899127,13899581..13899946, 13900061..13900845,13900932..13901044,13901137..13901524) /locus_tag="TCM_028350" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29895.m000309" /inference="similar to AA sequence:Phytozome:GSVIVT01015493001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07428t00001" mRNA join(13899098..13899127,13899581..13899739, 13900061..13900845) /locus_tag="TCM_028350" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29895.m000309" /inference="similar to AA sequence:Phytozome:GSVIVT01015493001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc929t8" CDS join(13899664..13899946,13900061..13900782) /locus_tag="TCM_028350" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY26546.1" /db_xref="Phytozome:GSVIVT01015493001" /db_xref="TAIR:AT3G25910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6TEK8" /translation="MPKDRRVRSLSFDRSRVSPYPCSSRDAKQCLPENPLGLGFGSAK DVKEWEDTRCPICMEHPHNAVLLRCSSFEKGCRPFMCNTSYRHSNCLDQFWADGGLQP KLVCPLCRGAIYGWSVVEPARRFMNSKARNCSSETCDFSGTYGELRKHARSEHPLVRP TEVDPERQHDWTRLERERDYEDMLSSIQPVVREESDGESIPDLDDFRSWLTLNLAYLT LALELISDPRSTERGQFGRPGVTMFSYLGGTNRANGEHNSSVPDRDLLGHRNSSSLGE RFQGRHRSSQGMLQPRHHSSPSESSFRGRRQSSQADRARRGQGLLWRANGSHTFNNRP " CDS join(13899664..13899739,13900061..13900782) /locus_tag="TCM_028350" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY26547.1" /db_xref="Phytozome:GSVIVT01015493001" /db_xref="TAIR:AT3G25910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H984" /translation="MPKDRRVRSLSFDRSRVSPYPCSSRGADGGLQPKLVCPLCRGAI YGWSVVEPARRFMNSKARNCSSETCDFSGTYGELRKHARSEHPLVRPTEVDPERQHDW TRLERERDYEDMLSSIQPVVREESDGESIPDLDDFRSWLTLNLAYLTLALELISDPRS TERGQFGRPGVTMFSYLGGTNRANGEHNSSVPDRDLLGHRNSSSLGERFQGRHRSSQG MLQPRHHSSPSESSFRGRRQSSQADRARRGQGLLWRANGSHTFNNRP" gene 13905587..13908710 /locus_tag="TCM_028351" /note="dbxref CacaoGD:Thecc1EG028351" mRNA join(13905587..13905642,13905963..13906064, 13906525..13906659,13906775..13906874,13907179..13907245, 13908283..13908361,13908442..13908710) /locus_tag="TCM_028351" /product="Glutaredoxin 4 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29841.m002802" /inference="similar to AA sequence:ricco:29841.m002802" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b027421t1a2; alternateUTRof:Thecc1EG028351t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15881t2" mRNA join(13905803..13905862,13905963..13906064, 13906525..13906659,13906775..13906874,13907179..13907245, 13908283..13908361,13908442..13908660) /locus_tag="TCM_028351" /product="Glutaredoxin 4 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29841.m002802" /inference="similar to AA sequence:ricco:29841.m002802" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15881t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15881t2" CDS join(13905993..13906064,13906525..13906659, 13906775..13906874,13907179..13907245,13908283..13908361, 13908442..13908498) /locus_tag="TCM_028351" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29841.m002802" /codon_start=1 /product="Glutaredoxin 4 isoform 1" /protein_id="EOY26548.1" /db_xref="TAIR:AT3G15660.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LBK6" /translation="MARLFSNAVIKGIAGLSAARSSTKALGSFYRDGLKYSTTVPGDP DTHEDFRPTNKVQGSPVSLKDVVEQDVKENPVMIYMKGVPDFPQCGFSSLAVRVLKHY NVPLSARNILEDPELKTAVKAFSHWPTFPQIFINGEFIGGSDIILNMHQSGELKDKLK GIAASPKSE" CDS join(13905993..13906064,13906525..13906659, 13906775..13906874,13907179..13907245,13908283..13908361, 13908442..13908498) /locus_tag="TCM_028351" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29841.m002802" /codon_start=1 /product="Glutaredoxin 4 isoform 1" /protein_id="EOY26549.1" /db_xref="TAIR:AT3G15660.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LBK6" /translation="MARLFSNAVIKGIAGLSAARSSTKALGSFYRDGLKYSTTVPGDP DTHEDFRPTNKVQGSPVSLKDVVEQDVKENPVMIYMKGVPDFPQCGFSSLAVRVLKHY NVPLSARNILEDPELKTAVKAFSHWPTFPQIFINGEFIGGSDIILNMHQSGELKDKLK GIAASPKSE" gene complement(13908794..13913792) /locus_tag="TCM_028352" /note="dbxref CacaoGD:Thecc1EG028352" mRNA complement(join(13908794..13909682,13909765..13909992, 13910118..13910462,13911228..13911599,13911883..13911975, 13912066..13912317,13912526..13913768)) /locus_tag="TCM_028352" /product="JHL25H03.15 protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s17340.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17340.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc137t5" mRNA complement(join(13908878..13909359,13909791..13909992, 13910118..13910462,13911228..13911599,13911883..13911975, 13912066..13912317,13912526..13913792)) /locus_tag="TCM_028352" /product="JHL25H03.15 protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s17340.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17340.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc137t7; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc137t5" mRNA complement(join(13908878..13909685,13909765..13909992, 13910117..13910462,13911228..13911599,13911883..13911975, 13912066..13912317,13912526..>13913583)) /locus_tag="TCM_028352" /product="JHL25H03.15 protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s17340.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17340.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3146t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc137t5" mRNA complement(join(13909334..13909359,13909452..13909682, 13909765..13909992,13910118..13910462,13911228..13911599, 13911883..13911975,13912066..13912317,13912526..13913792)) /locus_tag="TCM_028352" /product="JHL25H03.15 protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s17340.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17340.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc117t7; alternateUTRof:Thecc1EG028352t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc137t5" mRNA complement(join(13909334..13909359,13909452..13909992, 13910118..13910462,13911228..13911599,13911883..13911975, 13912066..13912317,13912526..13913792)) /locus_tag="TCM_028352" /product="JHL25H03.15 protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s17340.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17340.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc117t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc137t5" CDS complement(join(13909358..13909359,13909791..13909992, 13910118..13910462,13911228..13911599,13911883..13911975, 13912066..13912317,13912526..13913728)) /locus_tag="TCM_028352" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="JHL25H03.15 protein isoform 5" /protein_id="EOY26554.1" /db_xref="Phytozome:POPTR_0001s17340.1" /db_xref="TAIR:AT1G15440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NUE1" /translation="MNYRFQNLLGAPYRGGNAVITQNTNLISPVGNRVSVTDLVKSQT VTLPDQSSSNIRRIAASPDGVFLLTVDDNNRCLFINIPRRVVLHRITFKHPVSAVKFN PNGKYVAVAAGKLLQIWKSPGFKREVFGFELVRTFADCNDKILAIDWDNESKYLIVGT KDLTVRLFFVDKVKGSYKKPFSFLGHKDSVVGCFFGVDKKSNRVNKVYTIARDGFIFS WSYSGNDAKINDFRDEVLEDDEPPSPGTPEKDGEGIVKKRKDFDGKESGFGEDEDYLS GGPWELTKHCFMQAPAKLTACDYHRGLDLVVVGFSNGVFGLYQMPDFVCIHLLSISRE KITTAVFNDLGNWLTFGCAELGQLLVWEWRSESYILKQQGHYFDVNTLAYSPDSQLLA TGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHCLLSASLDGTVRAWDLLRY RNFRTFTTPSSRQFVSLAADQSGEVICAGTLDSFEIFVWSMKTGRLLDVLSGHEGPVH GLMFSPTNAILASSSWDKTVRLWDVFEGKGTVETFPHAHDVLTVTYRPDGKQLACSTL DGQIHFWDPIDGLLMYTIEGRRDIAGGRLMTDRRSAANSSSGKCFTSLCYSADGSYIL AGGSSRFICMYDVADQVLLRRFQITHNLSLDGVLDFLNSKNMTAAGPLDLIDDDNSDT EEGIDKQTRGNMGYNLPGSMPNHGRPVVRTKCLKIAPTGRSFSAATTEGVLVYSIDES FIFDPTDLDIDVTPEAIDAALNEDQPSRALILSLRLNEDTLIKKCIFSVSLVDVPAVA SSIPCRYLQRLIEALVDLLERCPH" CDS complement(join(13909512..13909682,13909765..13909992, 13910118..13910462,13911228..13911599,13911883..13911975, 13912066..13912317,13912526..13913728)) /locus_tag="TCM_028352" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="JHL25H03.15 protein isoform 1" /protein_id="EOY26550.1" /db_xref="Phytozome:POPTR_0001s17340.1" /db_xref="TAIR:AT1G15440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NUE1" /translation="MNYRFQNLLGAPYRGGNAVITQNTNLISPVGNRVSVTDLVKSQT VTLPDQSSSNIRRIAASPDGVFLLTVDDNNRCLFINIPRRVVLHRITFKHPVSAVKFN PNGKYVAVAAGKLLQIWKSPGFKREVFGFELVRTFADCNDKILAIDWDNESKYLIVGT KDLTVRLFFVDKVKGSYKKPFSFLGHKDSVVGCFFGVDKKSNRVNKVYTIARDGFIFS WSYSGNDAKINDFRDEVLEDDEPPSPGTPEKDGEGIVKKRKDFDGKESGFGEDEDYLS GGPWELTKHCFMQAPAKLTACDYHRGLDLVVVGFSNGVFGLYQMPDFVCIHLLSISRE KITTAVFNDLGNWLTFGCAELGQLLVWEWRSESYILKQQGHYFDVNTLAYSPDSQLLA TGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHCLLSASLDGTVRAWDLLRY RNFRTFTTPSSRQFVSLAADQSGEVICAGTLDSFEIFVWSMKTGRLLDVLSGHEGPVH GLMFSPTNAILASSSWDKTVRLWDVFEGKGTVETFPHAHDVLTVTYRPDGKQLACSTL DGQIHFWDPIDGLLMYTIEGRRDIAGGRLMTDRRSAANSSSGKCFTSLCYSADGSYIL AGGSSRFICMYDVADQVLLRRFQITHNLSLDGVLDFLNSKNMTAAGPLDLIDDDNSDT EEGIDKQTRGNMGYNLPGSMPNHGRPVVRTKCLKIAPTGRSFSAATTEGVLVYSIDES FIFDPTDLDIDVTPEAIDAALNEDQPSRALILSLRLNEDTLIKKCIFSVSLVDVPAVA SSIPCRYLQRLIEALVDLLERCPHLEFVLCWCQELCQVHGNSIQQNSRNLLPALKSLQ KAITIIHQDLADTCASNEYMLRYLCSVSIKK" CDS complement(join(13909512..13909682,13909765..13909992, 13910118..13910462,13911228..13911599,13911883..13911975, 13912066..13912317,13912526..13913728)) /locus_tag="TCM_028352" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="JHL25H03.15 protein isoform 1" /protein_id="EOY26551.1" /db_xref="Phytozome:POPTR_0001s17340.1" /db_xref="TAIR:AT1G15440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NUE1" /translation="MNYRFQNLLGAPYRGGNAVITQNTNLISPVGNRVSVTDLVKSQT VTLPDQSSSNIRRIAASPDGVFLLTVDDNNRCLFINIPRRVVLHRITFKHPVSAVKFN PNGKYVAVAAGKLLQIWKSPGFKREVFGFELVRTFADCNDKILAIDWDNESKYLIVGT KDLTVRLFFVDKVKGSYKKPFSFLGHKDSVVGCFFGVDKKSNRVNKVYTIARDGFIFS WSYSGNDAKINDFRDEVLEDDEPPSPGTPEKDGEGIVKKRKDFDGKESGFGEDEDYLS GGPWELTKHCFMQAPAKLTACDYHRGLDLVVVGFSNGVFGLYQMPDFVCIHLLSISRE KITTAVFNDLGNWLTFGCAELGQLLVWEWRSESYILKQQGHYFDVNTLAYSPDSQLLA TGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHCLLSASLDGTVRAWDLLRY RNFRTFTTPSSRQFVSLAADQSGEVICAGTLDSFEIFVWSMKTGRLLDVLSGHEGPVH GLMFSPTNAILASSSWDKTVRLWDVFEGKGTVETFPHAHDVLTVTYRPDGKQLACSTL DGQIHFWDPIDGLLMYTIEGRRDIAGGRLMTDRRSAANSSSGKCFTSLCYSADGSYIL AGGSSRFICMYDVADQVLLRRFQITHNLSLDGVLDFLNSKNMTAAGPLDLIDDDNSDT EEGIDKQTRGNMGYNLPGSMPNHGRPVVRTKCLKIAPTGRSFSAATTEGVLVYSIDES FIFDPTDLDIDVTPEAIDAALNEDQPSRALILSLRLNEDTLIKKCIFSVSLVDVPAVA SSIPCRYLQRLIEALVDLLERCPHLEFVLCWCQELCQVHGNSIQQNSRNLLPALKSLQ KAITIIHQDLADTCASNEYMLRYLCSVSIKK" CDS complement(join(13909738..13909992,13910118..13910462, 13911228..13911599,13911883..13911975,13912066..13912317, 13912526..13913728)) /locus_tag="TCM_028352" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="JHL25H03.15 protein isoform 3" /protein_id="EOY26552.1" /db_xref="Phytozome:POPTR_0001s17340.1" /db_xref="TAIR:AT1G15440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NUE1" /translation="MNYRFQNLLGAPYRGGNAVITQNTNLISPVGNRVSVTDLVKSQT VTLPDQSSSNIRRIAASPDGVFLLTVDDNNRCLFINIPRRVVLHRITFKHPVSAVKFN PNGKYVAVAAGKLLQIWKSPGFKREVFGFELVRTFADCNDKILAIDWDNESKYLIVGT KDLTVRLFFVDKVKGSYKKPFSFLGHKDSVVGCFFGVDKKSNRVNKVYTIARDGFIFS WSYSGNDAKINDFRDEVLEDDEPPSPGTPEKDGEGIVKKRKDFDGKESGFGEDEDYLS GGPWELTKHCFMQAPAKLTACDYHRGLDLVVVGFSNGVFGLYQMPDFVCIHLLSISRE KITTAVFNDLGNWLTFGCAELGQLLVWEWRSESYILKQQGHYFDVNTLAYSPDSQLLA TGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHCLLSASLDGTVRAWDLLRY RNFRTFTTPSSRQFVSLAADQSGEVICAGTLDSFEIFVWSMKTGRLLDVLSGHEGPVH GLMFSPTNAILASSSWDKTVRLWDVFEGKGTVETFPHAHDVLTVTYRPDGKQLACSTL DGQIHFWDPIDGLLMYTIEGRRDIAGGRLMTDRRSAANSSSGKCFTSLCYSADGSYIL AGGSSRFICMYDVADQVLLRRFQITHNLSLDGVLDFLNSKNMTAAGPLDLIDDDNSDT EEGIDKQTRGNMGYNLPGSMPNHGRPVVRTKCLKIAPTGRSFSAATTEGVLVYSIDES FIFDPTDLDIDVTPEAIDAALNEDQPSRALILSLRLNEDTLIKKCIFSVSLVDVPAVA SSIPCRYLQRLIEALVDLLERCPHLEFVLCWCQVAFFHFPI" CDS complement(join(13909985..13909992,13910117..13910462, 13911228..13911599,13911883..13911975,13912066..13912317, 13912526..>13913581)) /locus_tag="TCM_028352" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="JHL25H03.15 protein isoform 4" /protein_id="EOY26553.1" /db_xref="Phytozome:POPTR_0001s17340.1" /db_xref="TAIR:AT1G15440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NUE1" /translation="QSSSNIRRIAASPDGVFLLTVDDNNRCLFINIPRRVVLHRITFK HPVSAVKFNPNGKYVAVAAGKLLQIWKSPGFKREVFGFELVRTFADCNDKILAIDWDN ESKYLIVGTKDLTVRLFFVDKVKGSYKKPFSFLGHKDSVVGCFFGVDKKSNRVNKVYT IARDGFIFSWSYSGNDAKINDFRDEVLEDDEPPSPGTPEKDGEGIVKKRKDFDGKESG FGEDEDYLSGGPWELTKHCFMQAPAKLTACDYHRGLDLVVVGFSNGVFGLYQMPDFVC IHLLSISREKITTAVFNDLGNWLTFGCAELGQLLVWEWRSESYILKQQGHYFDVNTLA YSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHCLLSASLDGT VRAWDLLRYRNFRTFTTPSSRQFVSLAADQSGEVICAGTLDSFEIFVWSMKTGRLLDV LSGHEGPVHGLMFSPTNAILASSSWDKTVRLWDVFEGKGTVETFPHAHDVLTVTYRPD GKQLACSTLDGQIHFWDPIDGLLMYTIEGRRDIAGGRLMTDRRSAANSSSGKCFTSLC YSADGSYILAGGSSRFICMYDVADQVLLRRFQITHNLSLDGVLDFLNSKNMTAAGPLD LIDDDNSDTEEGIDKQTRGNMGYNLPGSMPNHGRPVVRTKCLKIAPTGRSFSAATTEG VLVYSIDESFIFDPTDLDIDVTPEGH" gene 13914000..13919665 /locus_tag="TCM_028353" /note="dbxref CacaoGD:Thecc1EG028353" mRNA join(13914000..13914116,13915009..13915169, 13915313..13915763,13916219..13916523,13916660..13916734, 13917231..13917411,13917481..13917579,13917876..13917942, 13918381..13919665) /locus_tag="TCM_028353" /product="Tesmin/TSO1-like CXC domain-containing protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05847" /inference="similar to AA sequence:frave:gene05847" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1786t1" mRNA join(13914000..13914116,13915313..13915763, 13916219..13916523,13916660..13916734,13917231..13917411, 13917481..13917579,13917876..13917942,13918381..13919665) /locus_tag="TCM_028353" /product="Tesmin/TSO1-like CXC domain-containing protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene05847" /inference="similar to AA sequence:ricco:29841.m002799" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b027423t1a2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1786t1" CDS join(13914060..13914116,13915009..13915169, 13915313..13915763,13916219..13916523,13916660..13916734, 13917231..13917411,13917481..13917579,13917876..13917942, 13918381..13918925) /locus_tag="TCM_028353" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene05847" /codon_start=1 /product="Tesmin/TSO1-like CXC domain-containing protein isoform 1" /protein_id="EOY26555.1" /db_xref="TAIR:AT3G22760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKY3" /translation="MESPKSDGNAVEAFPASALKSPFSKFLNNLSPIESANAARYIER LSESSLPTTPSVFGSPHLDLQPETGFLESEEIAASTSNAHGQLYSPSSSALIPCIQKQ FQSCNPSECVDDFLADPLEVDSAQHAETFLQSANVVPLLLPSCFTASQVTTKNDDYTN DWVVEVGAQTLPHLSKKHLLSGSLILLEGSGDQSIDESFDKILKFSSENICNYVEPDE LLEHQEASQHQRGIRRHLRFEATLDCKDNAAFNCHTSSRVREVVDHVDSDHQSSEAVV VDNEGHLPDNIEPPWDTQQVSCFDQQTLPCGGQRVEVLSQYAESSKGKRNRETYTYES GDFKRCNCQMSRCLKLYCECFAAGLYCVDSCACENCYNRTDYEDWVEDSREQIELRNP LAFAPTIVEQANDSPILADDGNWTTPSSARHKRGCKCKRSKCLKKYCECYRAKVGCSG GCRCEGCDNSFGKKSESIFQREEEWKNLLNMEELMSDQKGGTANQFSPTWEELGNTSH LTPLSHQVPSLILSKIWDFPYISQAQPQDGSGLQLSPGQLHWYSSALASVNAPCEIMG DGSPHIHNDNSNPANKLQSGSPNQERVFPPQQIQSDRLGSSSTAGLQSGRKLSSQAVS SFPPLSPHRNSKDRMNQIEDEQ" CDS join(13914079..13914116,13915313..13915763, 13916219..13916523,13916660..13916734,13917231..13917411, 13917481..13917579,13917876..13917942,13918381..13918925) /locus_tag="TCM_028353" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29841.m002799" /codon_start=1 /product="Tesmin/TSO1-like CXC domain-containing protein isoform 2" /protein_id="EOY26556.1" /db_xref="TAIR:AT3G22760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKY3" /translation="MEMPLRRSLLPHYEEIAASTSNAHGQLYSPSSSALIPCIQKQFQ SCNPSECVDDFLADPLEVDSAQHAETFLQSANVVPLLLPSCFTASQVTTKNDDYTNDW VVEVGAQTLPHLSKKHLLSGSLILLEGSGDQSIDESFDKILKFSSENICNYVEPDELL EHQEASQHQRGIRRHLRFEATLDCKDNAAFNCHTSSRVREVVDHVDSDHQSSEAVVVD NEGHLPDNIEPPWDTQQVSCFDQQTLPCGGQRVEVLSQYAESSKGKRNRETYTYESGD FKRCNCQMSRCLKLYCECFAAGLYCVDSCACENCYNRTDYEDWVEDSREQIELRNPLA FAPTIVEQANDSPILADDGNWTTPSSARHKRGCKCKRSKCLKKYCECYRAKVGCSGGC RCEGCDNSFGKKSESIFQREEEWKNLLNMEELMSDQKGGTANQFSPTWEELGNTSHLT PLSHQVPSLILSKIWDFPYISQAQPQDGSGLQLSPGQLHWYSSALASVNAPCEIMGDG SPHIHNDNSNPANKLQSGSPNQERVFPPQQIQSDRLGSSSTAGLQSGRKLSSQAVSSF PPLSPHRNSKDRMNQIEDEQ" gene complement(13919555..13923715) /locus_tag="TCM_028354" /note="dbxref CacaoGD:Thecc1EG028354" mRNA complement(join(13919555..13920004,13920098..13920191, 13920733..13920815,13921025..13921175,13921580..13921684, 13921816..13921885,13922037..13922073,13923197..13923339, 13923429..13923599)) /locus_tag="TCM_028354" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29841.m002798" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038377t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17360.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12595t00001" CDS complement(join(13919920..13920004,13920098..13920191, 13920733..13920815,13921025..13921175,13921580..13921684, 13921816..13921885,13922037..13922073,13923197..13923339, 13923429..13923521)) /locus_tag="TCM_028354" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG038377t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY26557.1" /db_xref="Phytozome:POPTR_0001s17360.1" /db_xref="TAIR:AT1G52700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J010" /translation="MSYSHHSMGSGLLLSLYYSLSHFASSTLLIALNFIDANFLGSRT TRRSFDFGRTHVVRPKGKHQATIVWLHGLGDNGSSWSQLLESLPLPNIKWICPTAPTR PVALLGGFPCTAWFDVGELSEDGPDDWEGLDASAAHIANLLSTEPSDVKVGIGGFSMG AAMALYSATSCALGRYGNGNPYPINLTVVVGLSGWLPGSRGLRNKIEVSHEAARRAAS LPILLSHGTCDDVVPFKFGEKSAHSLNIAGFQYLTFKTYEGIGHYTVPKEMDEVCNWL TARLGLEGSR" mRNA complement(join(13919981..13920032,13920098..13920191, 13920733..13920815,13921025..13921175,13921580..13921684, 13921816..13921885,13922037..13922073,13923197..13923311, 13923491..13923715)) /locus_tag="TCM_028354" /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29841.m002798" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038377t1" /inference="similar to AA sequence:ricco:29841.m002798" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1364t3; inference alignment:Newbler:10:TSA:cgbaP2_g12595t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1575t3" CDS complement(join(13919981..13920032,13920098..13920191, 13920733..13920815,13921025..13921175,13921580..13921684, 13921816..13921885,13922037..13922073,13923197..13923311, 13923491..13923521)) /locus_tag="TCM_028354" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29841.m002798; paralog of Thecc1EG038377t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /protein_id="EOY26558.1" /db_xref="TAIR:AT1G52700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J010" /translation="MSYSHHSMGSGSRTTRRSFDFGRTHVVRPKGKHQATIVWLHGLG DNGSSWSQLLESLPLPNIKWICPTAPTRPVALLGGFPCTAWFDVGELSEDGPDDWEGL DASAAHIANLLSTEPSDVKVGIGGFSMGAAMALYSATSCALGRYGNGNPYPINLTVVV GLSGWLPGSRGLRNKIEVSHEAARRAASLPILLSHGTCDDVVPFKFGEKSAHSLNIAG FQYLTFKTYEGIIGFDLDVQDWSLHCS" mRNA complement(join(<13919981..13920004,13920098..13920191, 13920733..13920815,13921025..13921175,13921580..13921684, 13921816..13921885,13922037..13922073,13923197..13923413)) /locus_tag="TCM_028354" /product="Alpha/beta-Hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29841.m002798" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038377t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17360.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1364t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1575t3; inference alignment:Newbler:10:TSA:cgbaP2_g12595t00001" CDS complement(join(<13919983..13920004,13920098..13920191, 13920733..13920815,13921025..13921149)) /locus_tag="TCM_028354" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG038377t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 3" /protein_id="EOY26559.1" /db_xref="Phytozome:POPTR_0001s17360.1" /db_xref="TAIR:AT3G15650.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J010" /translation="MGAAMALYSATSCALGRYGNGNPYPINLTVVVGLSGWLPGSRGL RNKIEVSHEAARRAASLPILLSHGTCDDVVPFKFGEKSAHSLNIAGFQYLTFKTYEGI GHYTVP" mobile_element 13928110..13928642 /note="source:scaffold_10_CACTA_0130 9010 9582" /mobile_element_type="transposon:TIR/CACTA" gene complement(13931070..13934603) /locus_tag="TCM_047059" /note="dbxref CacaoGD:Thecc1EG047059" mRNA complement(join(13931070..13931432,13932167..13932246, 13932394..13932460,13933702..13933755,13933946..13934031, 13934270..13934603)) /locus_tag="TCM_047059" /product="Rubredoxin-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g03680.4" /inference="similar to AA sequence:Phytozome:GSVIVT01017240001" /note="quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15919t3" CDS complement(join(13931370..13931432,13932167..13932246, 13932394..13932460,13933702..13933755,13933946..13934031, 13934270..13934420)) /locus_tag="TCM_047059" /codon_start=1 /product="Rubredoxin-like superfamily protein" /protein_id="EOY26560.1" /db_xref="Phytozome:GSVIVT01017240001" /db_xref="TAIR:AT1G80230.1" /translation="MWRRLVTSQLKTLAAAPCRSAPRTAPLPFKSHISPSPSAAFLTH HFSTESADTAVKKRVEDIMPIATGHEREELAVELEGKKILEDVNYPEGPFGTKEAPAV IKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGPPDGHG DDDHHH" gene complement(13934008..13941093) /locus_tag="TCM_047060" /note="dbxref CacaoGD:Thecc1EG047060" mRNA complement(join(13934008..13934031,13935316..13935554, 13936419..13936506,13936939..13937052,13937128..13937199, 13937300..13937386,13938068..13938151,13938262..13938360, 13938548..13938634,13939493..13939564,13939641..13939820, 13939947..13940027,13940437..13940508,13940608..13941093)) /locus_tag="TCM_047060" /product="DNA photolyase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017239001" /inference="similar to AA sequence:Phytozome:POPTR_0003s05870.1" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc274t11; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc274t11" mRNA complement(join(13935049..13935554,13936236..13936331, 13936419..13936506,13936939..13937052,13937128..13937199, 13937300..13937386,13938068..13938151,13938262..13938360, 13938548..13938634,13939493..13939567,13939641..13939820, 13939947..13940027,13940437..13940508,13940608..13941093)) /locus_tag="TCM_047060" /product="DNA photolyase family protein isoform 3" /inference="similar to AA sequence:Phytozome:POPTR_0003s05870.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3239t1" mRNA complement(join(13935170..13935554,13936236..13936331, 13936419..13936506,13936939..13937052,13937128..13937199, 13937300..13937386,13938068..13938151,13938262..13938363, 13938548..13938634,13939493..13939564,13939641..13939820, 13939947..13940027,13940437..13940508,13940608..13941093)) /locus_tag="TCM_047060" /product="DNA photolyase family protein isoform 2" /inference="similar to AA sequence:Phytozome:POPTR_0003s05870.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc130t11" CDS complement(join(13935373..13935554,13936419..13936506, 13936939..13937052,13937128..13937199,13937300..13937386, 13938068..13938151,13938262..13938360,13938548..13938634, 13939493..13939564,13939641..13939820,13939947..13940027, 13940437..13940508,13940608..13940943)) /locus_tag="TCM_047060" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNA photolyase family protein isoform 1" /protein_id="EOY26561.1" /db_xref="Phytozome:POPTR_0003s05870.1" /db_xref="TAIR:AT3G15620.1" /translation="MTPSHSLLNSNMPSGSASLIWFRKGLRIHDNPALEYASRASAFV YPLFVIDPHYMEPDPKAFSPGSTRAGISRIRFLLESLADLDLSLKKLGSRLLVLKGEP SEVLIRCLKEWDVKKICFEYDTDPYYQALDNKIKNYASLAGIEVFSPVSHTLFNPADI IEKNGGRPPLSYQSFLKLAGEPSWASSPLLVELSSVPPVGDVASFEISQVPTLKELGY VQNDQEELTPFRGGESEALRRLRESLSDKEWVANFEKPKGDPSAYIKPATTVLSPYLK FGCLSSRYFYQCLKDVYKNVKRHTSPPVSLVGQLLWREFFYTVAFGTPNFDKMNGNKI CKQIPWNDDDELLAAWREARTGYPWIDAIMVQLREWGWMHHLARHCVACFLTRGDLFL HWEKGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPTSFGKKYDPHGDYIR HFLPILKVVSHDSASKECRRKMGEAYALNKKLNGVVSEDDVKSLRRRLDEDGGQEARG RRQRQKLIS" CDS complement(join(13935373..13935554,13936236..13936331, 13936419..13936506,13936939..13937052,13937128..13937199, 13937300..13937386,13938068..13938151,13938262..13938363, 13938548..13938634,13939493..13939564,13939641..13939820, 13939947..13940027,13940437..13940508,13940608..13940943)) /locus_tag="TCM_047060" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA photolyase family protein isoform 2" /protein_id="EOY26562.1" /db_xref="Phytozome:POPTR_0003s05870.1" /db_xref="TAIR:AT3G15620.1" /translation="MTPSHSLLNSNMPSGSASLIWFRKGLRIHDNPALEYASRASAFV YPLFVIDPHYMEPDPKAFSPGSTRAGISRIRFLLESLADLDLSLKKLGSRLLVLKGEP SEVLIRCLKEWDVKKICFEYDTDPYYQALDNKIKNYASLAGIEVFSPVSHTLFNPADI IEKNGGRPPLSYQSFLKLAGEPSWASSPLLVELSSVPPVGDVASFEISQVPTLKELGY VQNDQEELTPFRGGESEALRRLRESLSDKEWVANFEKPKGDPSAYIKPATTVLSPYLK QFGCLSSRYFYQCLKDVYKNVKRHTSPPVSLVGQLLWREFFYTVAFGTPNFDKMNGNK ICKQIPWNDDDELLAAWREARTGYPWIDAIMVQLREWGWMHHLARHCVACFLTRGDLF LHWEKGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPTSFGKKYDPHGDYI RHFLPILKDMPKEYIYEPWTAPLSVQNKAKCIIGRDYPKPVVSHDSASKECRRKMGEA YALNKKLNGVVSEDDVKSLRRRLDEDGGQEARGRRQRQKLIS" CDS complement(join(13935373..13935554,13936236..13936331, 13936419..13936506,13936939..13937052,13937128..13937199, 13937300..13937386,13938068..13938151,13938262..13938360, 13938548..13938634,13939493..13939567,13939641..13939820, 13939947..13940027,13940437..13940508,13940608..13940943)) /locus_tag="TCM_047060" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="DNA photolyase family protein isoform 3" /protein_id="EOY26563.1" /db_xref="Phytozome:POPTR_0003s05870.1" /db_xref="TAIR:AT3G15620.1" /translation="MTPSHSLLNSNMPSGSASLIWFRKGLRIHDNPALEYASRASAFV YPLFVIDPHYMEPDPKAFSPGSTRAGISRIRFLLESLADLDLSLKKLGSRLLVLKGEP SEVLIRCLKEWDVKKICFEYDTDPYYQALDNKIKNYASLAGIEVFSPVSHTLFNPADI IEKNGGRPPLSYQSFLKLAGEPSWASSPLLVELSSVPPVGDVASFEISQVPTLKELGY VQNDQQEELTPFRGGESEALRRLRESLSDKEWVANFEKPKGDPSAYIKPATTVLSPYL KFGCLSSRYFYQCLKDVYKNVKRHTSPPVSLVGQLLWREFFYTVAFGTPNFDKMNGNK ICKQIPWNDDDELLAAWREARTGYPWIDAIMVQLREWGWMHHLARHCVACFLTRGDLF LHWEKGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPTSFGKKYDPHGDYI RHFLPILKDMPKEYIYEPWTAPLSVQNKAKCIIGRDYPKPVVSHDSASKECRRKMGEA YALNKKLNGVVSEDDVKSLRRRLDEDGGQEARGRRQRQKLIS" mobile_element 13941929..13942024 /note="source:CACAO_Mariner_E220_scaffold_9 9324 9421" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 13941940..13942027 /note="source:scaffold_9_CACTA_0942 5243 5333" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13942576..13943040 /note="source:scaffold_9_CACTA_0946 17754 18243" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13943081..13948819 /note="source:CACAO_LINE_E_9_scaffold_1 1100 6860" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(13948782..13948837) /note="source:scaffold_5_CACTA_0613 719 773" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13949545..13949698 /note="source:scaffold_9_CACTA_0942 16747 16895" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13949689..13949843 /note="source:scaffold_9_CACTA_0942 17049 17220" /mobile_element_type="transposon:TIR/CACTA" gene 13950390..13958221 /locus_tag="TCM_028359" /note="dbxref CacaoGD:Thecc1EG028359" mRNA join(13950390..13950883,13950994..13951143, 13951357..13951494,13952279..13952288,13952366..13952416, 13953044..13953065,13953187..13953205,13953752..13953937, 13955101..13955150,13955957..13956096,13956181..13956202, 13956680..13956714,13956821..13956842,13956942..13957020, 13957525..13958221) /locus_tag="TCM_028359" /product="JHL25H03.10-like protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g07330.3" /inference="similar to AA sequence:ricco:29841.m002795" /note="quality class is strong-expertchoice, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3231t4" CDS join(13950482..13950883,13950994..13951143, 13951357..13951494,13952279..13952288,13952366..13952416, 13953044..13953065,13953187..13953205,13953752..13953937, 13955101..13955150,13955957..13956096,13956181..13956202, 13956680..13956714,13956821..13956842,13956942..13957020, 13957525..13957527) /locus_tag="TCM_028359" /note="dbxref ricco:29841.m002795" /codon_start=1 /product="JHL25H03.10-like protein" /protein_id="EOY26564.1" /db_xref="TAIR:AT2G25590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NUD7" /translation="MRFKKGSKVEVLTKEEVSTSAWRCAEIISGNGHTYSVKYGWFPN TGEAAAVKRVPRKAIRPCPPPVNGTNDWVSGDVVEVFDELCWKPAVIVRVFSENNFFV RILGSNSELSAHKYRLRVRQSWEDGNWFLIGKGSSNFTGPPRRKRSLPGFSNVGGQKK RITEKGGVGVQRIIIRLPSPASEKRCGGGCSVSTSVELGTDYHSSELQAYQQVLRALH ASGPLTWEEEEKKSHGGNIHGFFLKELLIPAVVDENPCCGSHGLKELLLTALLVSTRT FPESRYTPPSLDFCGLSPSNCCVALSMSSPMCHGFFLHTSLPPMSTMVFKADMVRLMW TLFGDFLSLKSHGQCWKHPYPASKAMMELSLSSLAVDQGATFMVYSLKDPLSLAVDKS RLTKSLKLFVSMRVMYLNENLCSGFWIHSHCCWIEPWTERVASVHILWYE" misc_feature join(13952279..13952380,13954619..13955150, 13955915..13955984) /locus_tag="TCM_028359" /note="Gene fragment of Thecc1EG028359t1; dbxref gnl|CacaoGD|Thecc1EG028359t1; quality class is mediumpartial-partof is thecc1eg028359t1, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc205t9; dbxref CacaoGD:Thecc1EG028361t1" mobile_element 13957189..13957249 /note="source:CACAO_M_S_E144962_F231_scaffold_10 1433 1493" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13958139..13958284 /note="source:scaffold_7_CACTA_0795 2871 3017" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13958449..13958583 /note="source:CACAO_PIF_E119_scaffold_3 4504 4647" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(13958566..13958609) /note="source:INTACT135F_F90_scaffold_2-int 13914 14050" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13958610..13959256) /note="source:CACAO_M_E4753_F17_scaffold_2 7194 7828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13958686..13959653 /note="source:scaffold_2_CACTA_0244 12398 13379" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13959257..13959486) /note="source:INTACT135F_F90_scaffold_2-int 13178 13913" /mobile_element_type="retrotransposon:LTR/Copia" gene 13959944..13964097 /locus_tag="TCM_028363" /note="dbxref CacaoGD:Thecc1EG028363" mRNA join(13959944..13960142,13960255..13960287, 13960392..13960452,13961510..13961642,13961914..13962196, 13962278..13962349,13963013..>13963129) /locus_tag="TCM_028363" /product="Cytochrome c1-1, heme protein, mitochondrial isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g07020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017100t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400049649" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc722t3; inference alignment:Newbler:10:TSA:cgbaP2_g08189t00001" mRNA join(13959944..13960142,13960255..13960287, 13960392..13960447,13961422..13961642,13961914..13962196, 13962278..13962349,13963013..>13963129) /locus_tag="TCM_028363" /product="Cytochrome c1-1, heme protein, mitochondrial isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g07020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017100t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400049649" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc722t10; inference alignment:Newbler:10:TSA:cgbaP2_g08189t00001" mRNA join(13960011..13960142,13960255..13960287, 13960392..13960447,13961422..13961642,13961917..13962196, 13962278..13962349,13963013..13963129,13963221..13963286, 13963791..13964097) /locus_tag="TCM_028363" /product="Cytochrome c1-1, heme protein, mitochondrial isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g07020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017100t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400049649" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g08189t00001; inference alignment:Newbler:10:TSA:cgbaP2_g08189t00001" CDS join(13960139..13960142,13960255..13960287, 13960392..13960447,13961422..13961642,13961917..13962196, 13962278..13962349,13963013..13963129,13963221..13963286, 13963791..13963907) /locus_tag="TCM_028363" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG017100t1" /codon_start=1 /product="Cytochrome c1-1, heme protein, mitochondrial isoform 1" /protein_id="EOY26565.1" /db_xref="Phytozome:PGSC0003DMP400049649" /db_xref="TAIR:AT5G40810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P25076" /translation="MRLAQKIRTGIQGYGKLSFLSRLARQTHDAKTLPAVPYQIVKQD RDRLGSTGNNSLRWLALFGTGVSGLLGFSTIAYSDEAEHGLGVPNYPWPHEGILSSYD HASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEM FTRPGKLSDRFPQPYANEQAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYHDPP AGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVTFLAWAAEP EMEERKLMGFKWIFVLSLALLQAAYYRRLKWSIFKSRKLVLDVVN" CDS join(13960139..13960142,13960255..13960287, 13960392..13960447,13961422..13961642,13961914..13962196, 13962278..13962349,13963013..>13963129) /locus_tag="TCM_028363" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG017100t1" /codon_start=1 /product="Cytochrome c1-1, heme protein, mitochondrial isoform 2" /protein_id="EOY26566.1" /db_xref="Phytozome:PGSC0003DMP400049649" /db_xref="TAIR:AT5G40810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P25076" /translation="MRLAQKIRTGIQGYGKLSFLSRLARQTHDAKTLPAVPYQIVKQD RDRLGSTGNNSLRWLALFGTGVSGLLGFSTIAYSDEAEHGLGVPNYPWPHEGILSSYD HASRIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGE MFTRPGKLSDRFPQPYANEQAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYHDP PAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQ" CDS join(13960395..13960452,13961510..13961642, 13961914..13962196,13962278..13962349,13963013..>13963129) /locus_tag="TCM_028363" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG017100t1" /codon_start=1 /product="Cytochrome c1-1, heme protein, mitochondrial isoform 3" /protein_id="EOY26567.1" /db_xref="Phytozome:PGSC0003DMP400049649" /db_xref="TAIR:AT5G40810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P25076" /translation="MENSAFFQGSLAKLTMLRYFFGTGVSGLLGFSTIAYSDEAEHGL GVPNYPWPHEGILSSYDHASRIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETK AMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEQAARFANGGAYPPDLSLITKAR HNGQNYVFALLTGYHDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPAT EAQ" gene complement(13966491..13969695) /locus_tag="TCM_028364" /note="dbxref CacaoGD:Thecc1EG028364" mRNA complement(join(13966491..13967211,13967288..13967800, 13969553..13969695)) /locus_tag="TCM_028364" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29848.m004670" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038370t2" /inference="similar to AA sequence:Phytozome:GSVIVT01017233001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02983t00001" CDS complement(join(13966676..13967211,13967288..13967800, 13969553..13969622)) /locus_tag="TCM_028364" /note="paralog of Thecc1EG038370t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26568.1" /db_xref="Phytozome:GSVIVT01017233001" /db_xref="TAIR:AT5G11420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWN3" /translation="MQTISLLLLLICATCRIASSIKDGLLPNGNFEYGPKPSEMKGTK VVSPKAIPNWEISGVVEYIKSGQKQGDMLLIVPEGAFAVRLGNDALIKQTMKVIKGMF YSLTFSAARTCAQEERLNVSVSPNYEKNDYGLFPIQTMYSSNGWDSYAWAFQADEPLI EISIHNPGVEEDAACGPLIDSVALKTLYPPKRTPANLLKNGNFEEGPYIFPNTSWGVL IPPHIEDDHSPLPGWIIESLKAVKYIDSEHFSVPEGKRAIELVAGKESALAQVVKTTI GRSYVLSFTVGDANNACEGSMVVEAFAGKNTVKASYQSKGKGGFKRAILAFKAESSRT RIMFYSTFYTMKSDNSGSLCGPVLDDVKLLSVRKLHHV" mobile_element 13972945..13975897 /note="source:CACAO_M_E48381_F33_scaffold_6 1 2953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13981054..13982253) /note="source:CACAO_M_E43348_F5_scaffold_5 27070 28267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13986362..13986518) /note="source:CACAO_M_E84368_F4_scaffold_10 12498 12654" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13986519..13989236) /note="source:CACAO_M_E24729_F87_scaffold_4 4354 7330" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13989217..13993561) /note="source:CACAO_M_E84368_F4_scaffold_10 8165 12503" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13993564..13995264 /note="source:CACAO_M_S_E15657_F60_scaffold_2 3 1710" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13995264..13996577) /note="source:CACAO_M_E84368_F4_scaffold_10 6856 8169" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13996575..13998499 /note="source:CACAO_M_E42809_F5_scaffold_5 14105 16025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13998497..13999435) /note="source:CACAO_M_E52576_F245_scaffold_7 8581 9521" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14001149..14001205 /note="source:scaffold_3_CACTA_0382 5882 5938" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14001156..14001219) /note="source:CACAO_M_S_E65018_F143_scaffold_5 233 295" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14001170..14001584 /note="source:INTACT901F_F95_scaffold_6-int 12138 12552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14001585..14002635) /note="source:CACAO_M_S_E66239_F143_scaffold_5 1 1067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14002636..14004725) /note="source:CACAO_M_E84368_F4_scaffold_10 4760 6862" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(14004501..14009337) /locus_tag="TCM_028369" /note="dbxref CacaoGD:Thecc1EG028369" mRNA complement(join(14004501..14005788,14009248..14009337)) /locus_tag="TCM_028369" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element complement(14004713..14004914) /note="source:CACAO_M_E84368_F4_scaffold_10 11579 11786" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(14005483..14005743) /locus_tag="TCM_028369" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26569.1" /translation="MQNSSQIPSFDFHPWFGHQPATESSTTPTGGPPLLPRQLANTHV QPASKQPQPPFVHALPKGIQTTTQPPMSPRSFKKSFLMIAMG" mobile_element 14007228..14007296 /note="source:CACAO_M_E13038_F22_scaffold_3 17659 17719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14007236..14008390) /note="source:CACAO_M_E12297_F14_scaffold_3 20739 21490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14008741..14009232) /note="source:CACAO_M_E49885_F60_scaffold_7 5941 6429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14009235..14010068) /note="source:CACAO_M_E12347_F245_scaffold_3 2150 2985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14010068..14012010 /note="source:CACAO_M_E5627_F4_scaffold_2 3755 5740" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14011423..14012689 /note="source:CACAO_M_E42809_F5_scaffold_5 9631 10844" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14012690..14013451 /note="source:CACAO_M_E3687_F245_scaffold_1 831 1592" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14013466..14021162 /note="source:INTACT546_F245_scaffold_7-int 1936 9626" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14021163..14022574 /note="source:INTACT88_F12_scaffold_4-int 1740 3141" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14022567..14022651 /note="source:CACAO_M_E5702_F90_scaffold_2 2036 2124" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14022575..14024737) /note="source:CACAO_M_E58819_F24_scaffold_9 14103 16268" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14024521..14024904 /note="source:INTACT65_F13_scaffold_1-int 8260 8646" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14024732..14025085) /note="source:CACAO_M_E58819_F24_scaffold_9 3006 3359" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14025101..14027699 /note="source:CACAO_M_E48403_F344_scaffold_6 1 2599" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14027700..14028762 /note="source:INTACT88_F12_scaffold_4-int 3149 4206" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14028760..14029195 /note="source:CACAO_M_E3884_F22_scaffold_1 12722 13143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14030121..14030337) /note="source:CACAO_M_S_E66657_F76_scaffold_5 8276 8491" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14031646..14033449 /note="source:CACAO_M_S_E64023_F13_scaffold_5 5813 7639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14036602..14039320 /note="source:CACAO_M_E48407_F345_scaffold_6 1 2719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14039543..14040720) /note="source:CACAO_M_S_E66657_F76_scaffold_5 7091 8270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14042931..14042950) /note="source:CACAO_M_E9395_F12_scaffold_2 5882 5901" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14042951..14046036 /note="source:CACAO_M_E48408_F15_scaffold_6 1 3086" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14046401..14046456 /note="source:CACAO_M_E3884_F22_scaffold_1 13075 13130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14047807..14050740 /note="source:CACAO_M_S_E83672_F33_scaffold_6 1 2934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14051842..14051912) /note="source:INTACT120_F22_scaffold_3-int 8099 8154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14051945..14053910 /note="source:CACAO_M_S_E4413_F3_scaffold_1 1 1968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14054133..14054236 /note="source:INTACT7_F3_scaffold_8-int 6560 6656" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14055772..14058779 /note="source:INTACT7_F3_scaffold_8-int 1960 5001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14058780..14059105 /note="source:CACAO_M_E48415_F73_scaffold_6 1 326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14059385..14061500 /note="source:CACAO_M_E48415_F73_scaffold_6 327 2442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14061501..14064017 /note="source:CACAO_M_S_E4413_F3_scaffold_1 15336 17829" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14064018..14066830 /note="source:CACAO_M_E48416_F289_scaffold_6 1 2813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14066831..14067568 /note="source:CACAO_M_S_E4413_F3_scaffold_1 17825 18561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14067717..14075225) /note="source:CACAO_M_S_E6008_F12_scaffold_2 2567 10064" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14075214..14077940) /note="source:INTACT137_F12_scaffold_9-int 5837 8492" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14077844..14077964 /note="source:INTACT1443F_F12_scaffold_9-int 10845 10964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14077924..14078052) /note="source:CACAO_M_S_E32752_F12_scaffold_4 4878 5006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14077940..14080511 /note="source:CACAO_M_S_E102025_F12_scaffold_9 7583 10156" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14082732..14085712) /locus_tag="TCM_028376" /note="dbxref CacaoGD:Thecc1EG028376" mRNA complement(join(14082732..14083795,14085282..14085515, 14085659..14085712)) /locus_tag="TCM_028376" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.34 coverage" CDS complement(join(14083665..14083795,14085282..14085456)) /locus_tag="TCM_028376" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26570.1" /translation="MMPSVVRLIQMMIVMPVVENTLGDVGHWDIASNEDCDAVLGEIA LDDDFDILLVTLELGSIELLTRVKVSIHTPMCRYILGKMNDKGPRKHNLSIHLRMYR" mobile_element 14086446..14089025 /note="source:CACAO_M_E48419_F144_scaffold_6 1 2580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14090544..14090692 /note="source:CACAO_Mariner_E180_scaffold_6 1516 1659" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 14091962..14092016 /note="source:CACAO_Mariner_E180_scaffold_6 2707 2761" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 14096550..14096916 /note="source:CACAO_M_S_E4591_F5_scaffold_1 20110 20443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14097742..14102018 /note="source:CACAO_M_E48588_F7_scaffold_6 5780 10078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14102037..14103267) /note="source:CACAO_M_S_E4911_F76_scaffold_1 14017 15282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14104257..14104900) /note="source:CACAO_M_S_E4911_F76_scaffold_1 1795 2434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14105590..14105717) /note="source:CACAO_M_S_E4911_F76_scaffold_1 149 297" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14105717..14105969) /note="source:CACAO_M_E58324_F9_scaffold_9 23815 24070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14105973..14106025 /note="source:CACAO_M_E52239_F256_scaffold_7 21965 22014" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14106058..14106106 /note="source:CACAO_M_E52239_F256_scaffold_7 21966 22014" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14106123..14106907) /note="source:CACAO_M_E58324_F9_scaffold_9 22247 23059" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14106908..14109513 /note="source:CACAO_M_E58324_F9_scaffold_9 7669 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14109514..14110157) /note="source:CACAO_M_E58324_F9_scaffold_9 21588 22251" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14110168..14110299) /note="source:CACAO_M_S_E4911_F76_scaffold_1 16020 16138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14112274..14112357) /note="source:INTACT189_F49_scaffold_5-int 17819 17902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14112476..14123300 /note="source:CACAO_M_S_E83691_F15_scaffold_6 1 10825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14123301..14123368) /note="source:CACAO_M_E86052_F15_scaffold_12 9827 9864" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14123685..14124846) /locus_tag="TCM_028378" /note="dbxref CacaoGD:Thecc1EG028378" mRNA complement(14123685..14124846) /locus_tag="TCM_028378" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(14123900..14124598) /locus_tag="TCM_028378" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26571.1" /translation="MRLTFFDRILHLIVAHTIRPIGTKYSSVKNEEMWFMYLIKEKTK FELANFIFDDMWKVVTGARKGMMYGMVISEILNFHRLDTSCDPLVPHPLHYKLNSYTI KKLDYENRNGVWVPNWFVQEENNEEEEKEQEVRKEGEAFDQQVECSVAPDTSHHHISN IEQTLTNLFGYVQSMDTRLMGQMITLDTRMRALNAHMDGLETRLTALKNGFHSSFAAS PPPTSGHSSLPPPS" mobile_element 14125039..14125900 /note="source:INTACT537_F22_scaffold_2-int 10358 11214" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14125984..14126109) /note="source:CACAO_M_E86361_F7_scaffold_15 7640 7764" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14128493..14128732) /note="source:CACAO_M_S_E85957_F12_scaffold_7 12284 12520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14128733..14129264 /note="source:INTACT537_F22_scaffold_2-int 12643 13176" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14130789..14131123 /note="source:CACAO_Mariner_E180_scaffold_6 4027 4361" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 14131546..14134114 /note="source:CACAO_M_E58324_F9_scaffold_9 7667 10227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14132754..14141042 /note="source:CACAO_Mariner_E180_scaffold_6 1 8289" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(14140078..14141320) /note="source:scaffold_2_CACTA_0262 16564 17909" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14141320..14141852) /note="source:scaffold_2_CACTA_0262 5420 5950" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14143138..14144568) /note="source:CACAO_M_S_E54060_F7_scaffold_5 1512 2999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14144561..14145342 /note="source:CACAO_M_E48452_F5_scaffold_6 8828 9583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14145917..14145960 /note="source:CACAO_M_S_E5162_F13_scaffold_1 5318 5361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14146216..14147188 /note="source:scaffold_6_CACTA_0711 6016 6975" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14147163..14147208 /note="source:INTACT19F_F94_scaffold_1-int 10146 10189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14147313..14147770 /note="source:CACAO_M_E48452_F5_scaffold_6 11193 11647" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14147554..14148086 /note="source:INTACT551_F248_scaffold_7-int 11057 11587" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14148579..14150290 /note="source:CACAO_M_E13038_F22_scaffold_3 10684 12333" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14150274..14150325 /note="source:CACAO_M_S_E5162_F13_scaffold_1 5171 5223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14150764..14152343 /note="source:CACAO_M_E13038_F22_scaffold_3 12910 14385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14152344..14153128 /note="source:INTACT771_F78_scaffold_10-int 5083 5755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14153133..14153543 /note="source:scaffold_9_CACTA_0937 6413 6857" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14154693..14155305 /note="source:INTACT598_F89_scaffold_2-int 6741 7354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14162337..14162620) /note="source:CACAO_M_S_E119160_F14_scaffold_9 10198 10482" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14164954..14165616) /note="source:CACAO_M_S_E6875_F7_scaffold_2 3229 3890" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14165618..14167300) /note="source:CACAO_M_E1021_F7_scaffold_1 1498 3257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14167275..14168003 /note="source:CACAO_M_E48452_F5_scaffold_6 8828 9548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14169284..14172024 /note="source:CACAO_M_E48444_F73_scaffold_6 1 2719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14173921..14174707 /note="source:INTACT599_F268_scaffold_9-int 11407 12206" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14175273..14175647 /note="source:CACAO_M_E33933_F9_scaffold_4 24651 25029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14176123..14179144 /note="source:CACAO_M_E48451_F324_scaffold_6 1 3022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14179223..14182896 /note="source:CACAO_M_E48452_F5_scaffold_6 1 3674" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14184556..14197012 /note="source:CACAO_M_E48452_F5_scaffold_6 3675 16131" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14196961..14197022) /note="source:CACAO_M_E58601_F7_scaffold_9 10848 10915" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14198360..14198465) /note="source:CACAO_M_E48538_F49_scaffold_6 12173 12268" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14198808..14199166) /note="source:CACAO_M_E48538_F49_scaffold_6 11464 11820" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14199167..14199522 /note="source:INTACT649F_F368_scaffold_5-int 1 362" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14199579..14201238 /note="source:INTACT649F_F368_scaffold_5-int 353 2011" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14201464..14202045) /note="source:scaffold_2_CACTA_0260 3898 4480" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14206985..14208478) /note="source:CACAO_M_S_E7818_F60_scaffold_2 23661 25170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14212569..14213183) /note="source:scaffold_2_CACTA_0260 3898 4514" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14214868..14215289) /note="source:CACAO_M_E48538_F49_scaffold_6 6992 7402" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14215290..14218250 /note="source:CACAO_M_S_E83732_F7_scaffold_6 1 2961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14218251..14218352) /note="source:INTACT336_F12_scaffold_2-int 7566 7676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14220226..14223195 /note="source:CACAO_M_E48459_F325_scaffold_6 1 2970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14223428..14224318) /note="source:CACAO_M_S_E84261_F4_scaffold_6 10153 11015" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14224320..14225449) /note="source:CACAO_M_E33213_F12_scaffold_4 9610 10702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14224448..14226833 /note="source:CACAO_M_E42395_F3_scaffold_5 15059 17484" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14226831..14227114) /note="source:CACAO_M_S_E84261_F4_scaffold_6 37 321" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14227115..14229580 /note="source:CACAO_M_E23512_F28_scaffold_4 2527 5036" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14232271..14233822 /note="source:CACAO_M_E24592_F195_scaffold_4 19417 20971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14234126..14235933) /note="source:INTACT224_F176_scaffold_8-int 15637 16869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14246686..14247725) /note="source:INTACT224_F176_scaffold_8-int 14602 15641" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14249264..14251717) /note="source:INTACT224_F176_scaffold_8-int 797 3320" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14252892..14255198 /note="source:INTACT298_F14_scaffold_10-int 1 2331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14255199..14258162 /note="source:CACAO_M_S_E83753_F72_scaffold_6 1 2964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14258163..14259737) /note="source:INTACT288_F14_scaffold_2-int 6282 7861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14259740..14261166 /note="source:INTACT624_F277_scaffold_2-int 2076 3562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14261183..14267820 /note="source:CACAO_Mariner_E181_scaffold_6 1 6638" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(14267740..14267756) /note="source:CACAO_on_E279_scaffold_9 8453 8548" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(14267757..14267835) /note="source:CACAO_M_E13482_F324_scaffold_3 1 79" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14268322..14268420) /note="source:INTACT224_F176_scaffold_8-int 1 91" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14269691..14270902) /note="source:CACAO_M_E84189_F277_scaffold_10 1793 3002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14270069..14272787 /note="source:CACAO_M_E10603_F306_scaffold_2 5059 7769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14274165..14280457) /note="source:scaffold_7_CACTA_0793 3961 10234" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14280711..14281767 /note="source:scaffold_7_CACTA_0793 9159 10231" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14283177..14283310 /note="source:INTACT88_F12_scaffold_4-int 10260 10391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14283199..14283678) /note="source:CACAO_M_E1841_F5_scaffold_1 16015 16467" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14285024..14285075) /note="source:CACAO_M_E1841_F5_scaffold_1 15162 15215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14285191..14285664 /note="source:INTACT537_F22_scaffold_2-int 11929 12372" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14285457..14285817) /note="source:CACAO_M_E1841_F5_scaffold_1 10621 10953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14286486..14288137 /note="source:scaffold_7_CACTA_0793 4542 6174" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14288174..14290189 /note="source:scaffold_7_CACTA_0793 6171 8183" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14290196..14290992 /note="source:scaffold_7_CACTA_0793 8344 9145" /mobile_element_type="transposon:TIR/CACTA" gene complement(14292515..14293551) /locus_tag="TCM_028393" /note="dbxref CacaoGD:Thecc1EG028393" mRNA complement(14292515..14293551) /locus_tag="TCM_028393" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05860.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037996t1" /inference="similar to AA sequence:ricco:29841.m002787" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(14292872..14293237) /locus_tag="TCM_028393" /note="dbxref ricco:29841.m002787; paralog of Thecc1EG037996t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26572.1" /db_xref="TAIR:AT1G52720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKY8" /translation="MATTLTCSLSSPIRASSGSFGKPDPNRRKPVSSSSWWAPVFGWS SNPEYLNDSNAGDPSESKPDVSDPGRSRSRYTLGCFTEEKAKQLRRKTMENAAFHDIM YHSSIASRLASDISGWPEK" mobile_element complement(14294170..14295360) /note="source:INTACT135F_F90_scaffold_2-int 1 1229" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14295361..14295887) /note="source:INTACT414_F210_scaffold_5-int 1 57" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14300312..14301424) /note="source:CACAO_M_E36574_F4_scaffold_5 3697 4799" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14302129..14303638 /note="source:CACAO_M_E48483_F17_scaffold_6 1 1510" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14307752..14308924 /note="source:CACAO_M_E12297_F14_scaffold_3 1 1178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14309020..14309746 /note="source:CACAO_M_E34540_F17_scaffold_5 3881 4601" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14309735..14312114 /note="source:CACAO_M_E34540_F17_scaffold_5 5448 7836" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14313638..14316501 /note="source:CACAO_M_E48485_F15_scaffold_6 1 2864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14316515..14316587 /note="source:INTACT103_F9_scaffold_4-int 17506 17581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14317494..14318671) /note="source:INTACT336_F12_scaffold_2-int 1 1167" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14319625..14319705) /note="source:INTACT73_F14_scaffold_4-int 1090 1169" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14321568..14324478 /note="source:INTACT33_F7_scaffold_5-int 3608 6543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14325615..14325702) /note="source:scaffold_5_CACTA_0591 15375 15461" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14325628..14326267 /note="source:CACAO_M_E86305_F7_scaffold_15 6225 6867" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14326264..14329502 /note="source:CACAO_M_E33228_F15_scaffold_4 6685 9926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14329603..14330438) /note="source:CACAO_M_E9340_F15_scaffold_2 1 835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14330439..14332052 /note="source:CACAO_M_E59389_F22_scaffold_9 769 2391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14332053..14337018) /note="source:INTACT547_F246_scaffold_8-int 4789 9711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14336620..14341981 /note="source:CACAO_M_E48588_F7_scaffold_6 4613 10078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14341982..14343871) /note="source:INTACT727_F22_scaffold_9-int 5735 7624" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14343912..14348988) /note="source:INTACT727_F22_scaffold_9-int 428 5492" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14348991..14349309 /note="source:CACAO_M_E59389_F22_scaffold_9 785 1105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14350819..14351430) /note="source:scaffold_5_CACTA_0591 7191 7804" /mobile_element_type="transposon:TIR/CACTA" gene complement(14353413..14354224) /locus_tag="TCM_028400" /note="dbxref CacaoGD:Thecc1EG028400" mRNA complement(14353413..14354224) /locus_tag="TCM_028400" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.63 coverage" CDS complement(14353615..14353827) /locus_tag="TCM_028400" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26573.1" /translation="MVVSTMLAEIREIMWLQPCKSTCGLATYIKPWPCHVYITDRGLA TSNRPSTIQRFSSWSSLLHKDHTIAM" mobile_element 14359555..14359710 /note="source:INTACT262_F12_scaffold_3-int 12975 13131" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14360001..14360643) /note="source:scaffold_5_CACTA_0601 8100 8728" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14363497..14366262 /note="source:CACAO_M_E48498_F87_scaffold_6 1 2766" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14373973..14374007 /note="source:CACAO_M_E1841_F5_scaffold_1 8338 8372" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14374008..14376841) /note="source:CACAO_M_E43826_F15_scaffold_5 1 2829" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14376842..14377773 /note="source:CACAO_M_E1841_F5_scaffold_1 9661 10573" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14378338..14379507 /note="source:CACAO_M_E1841_F5_scaffold_1 13978 15161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14379461..14379519 /note="source:scaffold_4_CACTA_0493 1578 1643" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14382401..14383855 /note="source:CACAO_M_E5899_F5_scaffold_2 19652 21112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14386863..14387038) /note="source:CACAO_M_E5899_F5_scaffold_2 10309 10502" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14387528..14390080 /note="source:CACAO_M_S_E99258_F15_scaffold_9 1 2556" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14389571..14426854) /locus_tag="TCM_028403" /note="dbxref CacaoGD:Thecc1EG028403" mRNA complement(join(14389571..14389859,14393575..14393701, 14393807..14393825,14394244..14394499,14409357..14409431, 14413884..14414451,14426586..14426854)) /locus_tag="TCM_028403" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038785t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3206t1" mobile_element complement(14390056..14390207) /note="source:CACAO_M_S_E32752_F12_scaffold_4 10498 10629" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14390076..14390227 /note="source:INTACT95_F143_scaffold_9-int 10168 10308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14393254..14393449 /note="source:scaffold_3_CACTA_0382 1930 2121" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14393443..14393616 /note="source:scaffold_3_CACTA_0382 2320 2493" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(14393596..14393701,14393807..14393825, 14394244..14394463)) /locus_tag="TCM_028403" /note="paralog of Thecc1EG038785t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26574.1" /translation="MFLNFIDWWDNDELTAMGGFSWTSLLEGHSKPRYILPPYEKRGW ITPEANTFRVHFTPNHHMRVNSANANEWLCPRATIKFQLPLRVTNVYRDVATIVMGSR GVPGSDTTRSDK" mobile_element complement(14393616..14393708) /note="source:CACAO_M_E45364_F328_scaffold_6 3061 3153" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14393706..14395737) /note="source:CACAO_M_E45364_F328_scaffold_6 721 2758" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14395823..14395860) /note="source:CACAO_M_E45364_F328_scaffold_6 7889 7926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14395862..14395908) /note="source:CACAO_M_E45364_F328_scaffold_6 782 828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14395930..14396636) /note="source:CACAO_M_E45364_F328_scaffold_6 7160 7865" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14396637..14399439 /note="source:CACAO_M_S_E83788_F15_scaffold_6 1 2803" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14399440..14405397) /note="source:CACAO_M_E45364_F328_scaffold_6 1013 7795" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14405498..14406472) /note="source:CACAO_M_E45364_F328_scaffold_6 7142 8117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14406473..14407260 /note="source:scaffold_3_CACTA_0382 2488 3242" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14407524..14407719 /note="source:CACAO_M_E5899_F5_scaffold_2 19645 19838" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14407720..14409955) /note="source:CACAO_M_E52239_F256_scaffold_7 4235 6438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14409956..14410338) /note="source:CACAO_M_E4376_F15_scaffold_2 2496 2870" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14410339..14413297 /note="source:CACAO_M_E24720_F15_scaffold_4 1 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14413298..14415794 /note="source:CACAO_M_E52654_F15_scaffold_7 353 2853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14415795..14416181) /note="source:CACAO_M_E52239_F256_scaffold_7 3828 4215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14416176..14417469 /note="source:CACAO_M_E5899_F5_scaffold_2 19828 21119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14421642..14422229 /note="source:scaffold_5_CACTA_0591 7199 7787" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14424228..14424761 /note="source:CACAO_M_S_E144426_F33_scaffold_10 1 522" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14424738..14426615) /note="source:CACAO_M_E45364_F328_scaffold_6 7168 9041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14426731..14427705) /note="source:CACAO_M_E45364_F328_scaffold_6 6324 7199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14427728..14427869 /note="source:INTACT135_F42_scaffold_4-int 305 417" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14428887..14429175 /note="source:CACAO_M_E58819_F24_scaffold_9 14984 15273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14429133..14429200) /note="source:CACAO_M_E58324_F9_scaffold_9 8954 9025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14429216..14429300 /note="source:INTACT149_F15_scaffold_9-int 2840 2918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14429366..14429450 /note="source:INTACT149_F15_scaffold_9-int 2840 2918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14429485..14429762 /note="source:CACAO_M_E58819_F24_scaffold_9 15290 15576" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14430404..14431285) /note="source:CACAO_M_E14312_F12_scaffold_3 9801 10646" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14435431..14436153 /note="source:CACAO_M_E9677_F7_scaffold_2 9708 10375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14436131..14437824 /note="source:scaffold_1_CACTA_0028 14045 15733" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14437825..14438184) /note="source:INTACT642F_F365_scaffold_5-int 5911 7954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14438611..14442875) /note="source:CACAO_M_S_E32519_F76_scaffold_3 248 4498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14442971..14443174) /note="source:CACAO_M_S_E32519_F76_scaffold_3 5241 5435" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14445806..14451754) /locus_tag="TCM_028405" /note="dbxref CacaoGD:Thecc1EG028405" mRNA complement(join(14445806..14446779,14446865..14447002, 14447092..14447371,14447650..14447969,14448387..14448503, 14448587..14448682,14448770..14448943,14449327..14449493, 14449589..14449754,14449828..14449966,14450116..14450308, 14450421..14450503,14450607..14450712,14451544..14451754)) /locus_tag="TCM_028405" /product="Boron transporter, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g01390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038366t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s05840.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc65t1" CDS complement(join(14446750..14446779,14446865..14447002, 14447092..14447371,14447650..14447969,14448387..14448503, 14448587..14448682,14448770..14448943,14449327..14449493, 14449589..14449754,14449828..14449966,14450116..14450308, 14450421..14450503,14450607..14450710)) /locus_tag="TCM_028405" /note="paralog of Thecc1EG038366t1" /codon_start=1 /product="Boron transporter, putative" /protein_id="EOY26575.1" /db_xref="Phytozome:POPTR_0003s05840.1" /db_xref="TAIR:AT1G15460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RUW2" /translation="MEHFKTPFKGIASDVRGRAACYKQDWIGGLRSGLGILAPTTYIF FASALPVIAFGEQLSRDTDGSLSTVETLASTAFCGIIHSIFGGQPLLVLGVAEPTVIM YTYLYNFAKGRKDLGQELYLAWAGWVCVWTALLLFLLAMFNACTIINRFTRIAGELFG MLIAVLFIQEAIKGVVSEFEIPKAQDPKLEKYQFQWLYTNGLVGIIFTFGLLYTALKS RRARSWWYGTGWFRSLIADYGVPLMVVLWTVLSFSVPSKVPSGVPRRLFSPLPWESAS LEHWTVIKDMGKIPPLYIFSAFLPAVMIAGLYFFDHSVASQMAQQKEFNLKNPSAYHY DILLLGFMTLLCGLIGLPPSNGVLPQSPMHTKSLALLKRQLIRRKMVKSAKESIKQKA SNSEIYGKMQAVFIEMDSSPETTIVKELEDLKKVVMKGEKKGENEKETFDPERHIDAY LPVRVNEQRVSNLLQSLLVAASVCAIPAIKLIPTSVLWGYFAYMAIDSLPGNQFWERM LLLFITPGRRYKVLEGVHASFVESVPYRYIVMFTLFQLVYLLLCFGVTWIPIAGILFP LPFFLLISIRQYILPKVIQPNYLRELDAAEYEEITGAPRLSLSRSFKERETPRLGNEE DGVEMFDAELLDELTTSRGELKVRTVSFSEDRKGQVYPEAVEKE" mobile_element 14457954..14458020 /note="source:CACAO_M_E5899_F5_scaffold_2 20726 20788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14457963..14458021) /note="source:CACAO_M_E5899_F5_scaffold_2 20736 20794" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14463320..14464885 /note="source:CACAO_M_E33870_F15_scaffold_4 1 1551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14464986..14466495) /note="source:CACAO_M_E58324_F9_scaffold_9 18477 19983" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14466880..14484974) /locus_tag="TCM_028406" /note="dbxref CacaoGD:Thecc1EG028406" mRNA complement(join(14466880..14466924,14483110..14483984, 14484233..14484425,14484913..14484974)) /locus_tag="TCM_028406" /product="F-box family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028415t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01360.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.17 coverage" mobile_element 14473077..14475919 /note="source:CACAO_M_E48523_F15_scaffold_6 1 2843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14475776..14475938) /note="source:INTACT93_F15_scaffold_3-int 8143 8308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14476426..14476601) /note="source:INTACT39F_F22_scaffold_1-int 5661 5849" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(14483218..14483984,14484233..14484287)) /locus_tag="TCM_028406" /note="paralog of Thecc1EG028415t1" /codon_start=1 /product="F-box family protein" /protein_id="EOY26576.1" /db_xref="Phytozome:POPTR_0006s01360.1" /db_xref="TAIR:AT4G12560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCS6" /translation="MEGRAPDGLTSPADNNQQDFAKLHLHQSLKTNTNLKLVLDNTTE NDDKAYSVDFNSLCNLVQFPRPFTAEMNNYHSRIFGSCNGLLAEYHGDAGIALWNPST QKCHYLPAIADDVSMDHYIIPGYGYDNDTILGFGYDVISNDYKVVKMMRSKSQNCFKV MIYSLKAISWRRIKDCPYDIPFICNDGAYANGCLHWIGDEINNLFYGKLIFALDLGDE EYHEVPECDIDIRDFGYKNVGVLGGCLCVFRDCFVSYDDDNAVLWVMKEYGAKES" mobile_element complement(14486380..14489679) /note="source:CACAO_Mutator_E1998_scaffold_9 6596 10105" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(14490705..14490731) /note="source:scaffold_1_CACTA_0009 8686 8880" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14490732..14490962) /note="source:CACAO_Mutator_E1149_scaffold_5 9498 9731" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(14490963..14490973) /note="source:scaffold_1_CACTA_0009 8589 8685" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14491768..14492339) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6123 6614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14492340..14492740 /note="source:CACAO_M_E24592_F195_scaffold_4 1 426" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14492882..14493431) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5674" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14493301..14493451 /note="source:INTACT146F_F14_scaffold_2-int 14276 14420" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14493946..14524810) /locus_tag="TCM_028409" /note="dbxref CacaoGD:Thecc1EG028409" mRNA complement(join(14493946..14494712,14495623..14495691, 14495833..14495921,14496673..14496760,14497754..14497893, 14498709..14498812,14524283..14524810)) /locus_tag="TCM_028409" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.62 coverage" CDS complement(join(14494419..14494712,14495623..14495691, 14495833..14495921,14496673..14496760,14497754..14497893, 14498709..14498736)) /locus_tag="TCM_028409" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26577.1" /translation="MSDTIVTRQVLAFANGCVKEVKEFDSFVVPKRTRMFDFVLSKVN NITAAMSISREEIELREYDNIDTLLVVSKDKWAFKVSINTDFLSTRGDSYFLKISFPI RSEGRCLPTYMQMLLAHETLETTPDEARREYWVDIEGGASSHHDGEHSHDAVDGQDDE PSVDSENIDHGIVGAEGDNVTHVDDVVDDVVARDVILESVDVEGDHLPQADVVVEAAA EGNGNLESVQAEGNHDF" mobile_element complement(14497246..14497406) /note="source:scaffold_1_CACTA_0009 4805 4980" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14497278..14497434 /note="source:CACAO_Mutator_E1149_scaffold_5 13526 13713" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(14497335..14497517) /note="source:CACAO_Mutator_E1149_scaffold_5 1 191" /mobile_element_type="transposon:TIR/Mutator" gene 14498051..14499181 /locus_tag="TCM_028410" /note="dbxref CacaoGD:Thecc1EG028410" mRNA 14498051..14499181 /locus_tag="TCM_028410" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS 14498077..14498697 /locus_tag="TCM_028410" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26578.1" /translation="MPCHKFSPFRVTHSHQGVSQTLNPTMSQPCHIFLPCLSHILTMT CHIFRPWHVTSSHWRVAYYHNVVSHIPSMGHIFSPCHVTHSHHAISHILIMLCQTFPP CHVTNSKPCCVTTMSQILTMSSHKFSPCHVTNSKPYHVTTVSHILTMMSNTFSPCRVT HSHHSMSPPCHVIAMSHILTMLCHTFSPCHVTDSRHDVSHIPTMVC" mobile_element 14499057..14511147 /note="source:INTACT1218F_F372_scaffold_6-int 1 8341" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14511149..14513421 /note="source:CACAO_M_E57889_F328_scaffold_9 873 3161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14514019..14514070 /note="source:scaffold_5_CACTA_0610 5703 5755" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14515696..14515796 /note="source:CACAO_M_S_E14849_F156_scaffold_2 652 781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14515731..14515809) /note="source:INTACT753_F322_scaffold_5-int 8029 8102" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14518790..14522284) /locus_tag="TCM_028413" /note="dbxref CacaoGD:Thecc1EG028413" mRNA complement(join(14518790..14519279,14520005..14520157, 14521861..14522284)) /locus_tag="TCM_028413" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033752t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(14518909..14519279,14520005..14520157, 14521861..14522065)) /locus_tag="TCM_028413" /note="paralog of Thecc1EG033752t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26579.1" /translation="MAASRRRTPHHFPTCRFPLPHATRDHPQPCSSKTPSAASQQWLL TNYGTSKLASYFPPHSEEVIFGYSGDKHADHDTLESGKQLVGNALDTLTAACTREMMK GNNENILNLDLDLRKCKDTHAPWLIDGDFNVILKREERLYGATLHDGSMEDFAATLLI CGLLNGGFEGNPYTWTNSKMFQRLDRVVNNHQWASCFPNTKIQHLNRDGSDHCPLLFS FSKSFEKSPSSFWFLHAWVQHHDF" mobile_element complement(14522663..14523232) /note="source:CACAO_on_E681_scaffold_9 4521 5062" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 14524239..14529625 /locus_tag="TCM_028415" /note="dbxref CacaoGD:Thecc1EG028415" mRNA join(14524239..14524794,14528362..14529625) /locus_tag="TCM_028415" /product="F-box family protein" /inference="alignment:exonerate- protein:2:frave:gene03267.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029004t1" /inference="similar to AA sequence:ricco:29206.m000146" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc5741t1" mobile_element complement(14525032..14528150) /note="source:CACAO_on_E681_scaffold_9 20 3103" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS 14528444..14529586 /locus_tag="TCM_028415" /note="dbxref ricco:29206.m000146; paralog of Thecc1EG029004t1" /codon_start=1 /product="F-box family protein" /protein_id="EOY26580.1" /db_xref="TAIR:AT4G12560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCS6" /translation="MCPFPSDLITDILCRLPVKTLLRFKCVSKPWGSLIDDSDFVKIH LHQSLKTSTNIKLFLDNCVENDNEAYAVDFDSLCNLVQFPRPFTAEANKYQSRIFGSC NGLLAVYHRQEGIALWNPSTRKYHYLPTLGDDITMDHDILPGCGYDKNTILGFGYDVS NSDYKVVKMFRSKTQNCFKVMIYSLKANSWRRIKDCPYDIFTNYNDGAYVNGSLHWVG DEIDEFFGGKVIFALNLGTEEYFEVPEGDISFKKKKCGGDCTIFGYMNAGVLGGYLCV SHWYSTCSIEDHVNLWVMKEYGVKETWTELLHLSRDEWLTNIFHTRAIAYSRSGEKIL LDDGGGCQPAWFNLGNETGETLCILGVPQCQRFSTIIYVESLVSVY" mobile_element 14532796..14533344 /note="source:CACAO_M_E53135_F19_scaffold_8 2427 2980" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14533461..14536654 /note="source:CACAO_M_E53135_F19_scaffold_8 3145 6321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14545070..14548090 /note="source:CACAO_M_S_E83820_F7_scaffold_6 1 3021" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14548156..14548225) /note="source:CACAO_M_S_E14932_F233_scaffold_2 10202 10264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14550590..14553661 /note="source:CACAO_M_E48527_F306_scaffold_6 1 3072" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14556473..14558527) /locus_tag="TCM_028416" /note="dbxref CacaoGD:Thecc1EG028416" mRNA complement(join(14556473..14556500,14558138..14558527)) /locus_tag="TCM_028416" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017598t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(14558181..14558423) /locus_tag="TCM_028416" /note="paralog of Thecc1EG017598t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26581.1" /translation="MMEGHANNPPAQESSSGKCTYNKELSDVSSFPTVFEINFAKIEV HPRVRRKRHSDTEISIDKILSLTSDKAVNIGENDEA" mobile_element complement(14558470..14559484) /note="source:scaffold_2_CACTA_0262 7465 8557" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14559483..14559642) /note="source:scaffold_2_CACTA_0262 17236 17394" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14559606..14559666 /note="source:CACAO_M_S_E145849_F319_scaffold_11 1594 1654" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14559664..14560555 /note="source:CACAO_M_E500_F289_scaffold_1 1715 2545" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14560137..14560802) /note="source:CACAO_M_E5899_F5_scaffold_2 19652 20315" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14562605..14562773 /note="source:scaffold_8_CACTA_0860 422 590" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14563491..14563574) /note="source:CACAO_M_E69551_F193_scaffold_9 252 335" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(14569616..14571645) /locus_tag="TCM_028418" /note="dbxref CacaoGD:Thecc1EG028418" mRNA complement(join(14569616..14570138,14570260..14570506, 14570626..14570926,14571238..14571645)) /locus_tag="TCM_028418" /product="Dehydroquinate dehydratase / shikimate dehydrogenas, putative" /inference="alignment:exonerate- protein:2:ricco:30128.m008686" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025933t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03070.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc98t1" CDS complement(join(14570095..14570138,14570260..14570506, 14570626..14570926,14571238..14571275)) /locus_tag="TCM_028418" /note="paralog of Thecc1EG025933t1" /codon_start=1 /product="Dehydroquinate dehydratase / shikimate dehydrogenas, putative" /protein_id="EOY26582.1" /db_xref="Phytozome:POPTR_0013s03070.1" /db_xref="TAIR:AT3G06350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SQT8" /translation="MTLKKREPMLEERSNTAPGQPTVKELLDLYNMRHIGPDTKVHGV IGNPIGHSNSPFLYNAAFRSTSFNGIYLPLLVDNVSNFITTYSSPDFAGYSYSIPHKE GGPKCCDEVDPHPVVQHLDLVNTTSVGMKPRIDETPVSKEALKHYSLVFDAVYTPKLT RLLREAQESGATIVYGTQMFINQAFVQFEMFTGLPAPKQLIRDVLARNT" gene complement(14571945..14576727) /locus_tag="TCM_028419" /note="dbxref CacaoGD:Thecc1EG028419" mRNA complement(join(14571945..14571978,14572183..14572517, 14572953..14573092,14573172..14573309,14573972..14574147, 14574585..14574666,14575342..14575477,14576136..14576255, 14576408..14576727)) /locus_tag="TCM_028419" /product="Transducin/WD40 repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s17450.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037985t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17450.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08376t00001" CDS complement(join(14572252..14572517,14572953..14573092, 14573172..14573309,14573972..14574147,14574585..14574666, 14575342..14575477,14576136..14576253)) /locus_tag="TCM_028419" /note="paralog of Thecc1EG037985t1" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein" /protein_id="EOY26583.1" /db_xref="Phytozome:POPTR_0001s17450.1" /db_xref="TAIR:AT3G15610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSS7" /translation="MEKRKAAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPM LRNGETGDWIGTFEGHKGAVWSSCLDTNALRAASASADFSAKLWDALTGDELHSFEHK HIVRACSFSEDTHLLATGGLEKILRIFDLNRPDALPREVGNSPGSIRTVAWLHSDQTI LSSCTDTSGVRLWDLRSGKIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHF GLVKSYYMPCNVESASLEPKHGNKLIAGGEDMWVHVFDFHTGEEIGCNKGHHGPVHCV RFSPGGESYASGSEDGTIRIWQIGLVNHEENDSVPRNGPSGKVKAVADEVTRKIESGL HIGREGKTGERDKATDA" mobile_element 14577827..14580826 /note="source:CACAO_M_E42586_F54_scaffold_5 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14582011..14582095) /note="source:scaffold_6_CACTA_0702 6399 6482" /mobile_element_type="transposon:TIR/CACTA" gene complement(14582745..14586410) /locus_tag="TCM_028421" /note="dbxref CacaoGD:Thecc1EG028421" mRNA complement(join(14582745..14583414,14586335..14586410)) /locus_tag="TCM_028421" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS complement(14582854..14583096) /locus_tag="TCM_028421" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26584.1" /translation="MISPMSANIVETAMAMGIRWRGPLGCYYVEAGPQVDYYDYLLDS DISLGFQTWLLSHGEKYKFFRSSFIYTMILCLIPRG" mobile_element complement(14583772..14585035) /note="source:CACAO_M_E24592_F195_scaffold_4 20 1328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14584900..14586279 /note="source:CACAO_M_E24592_F195_scaffold_4 2504 3877" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14586299..14586413) /note="source:scaffold_6_CACTA_0702 9786 9884" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14587437..14587694) /note="source:scaffold_6_CACTA_0702 3504 3767" /mobile_element_type="transposon:TIR/CACTA" gene 14588022..14596296 /locus_tag="TCM_028423" /note="dbxref CacaoGD:Thecc1EG028423" mRNA join(14588022..14588077,14588429..14588878, 14596180..14596296) /locus_tag="TCM_028423" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039587t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(14588064..14588077,14588429..14588840) /locus_tag="TCM_028423" /note="paralog of Thecc1EG039587t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26585.1" /translation="MGCYSSNKSTGRFKSHERKQRHNPSKGGRRLNRPKQSNLGQNHG KGKKPVKKHDENIYHHCGMFGHWLLVYVLLTNLYQAILKDKSKRVETHTIENSTIMTN IEANNASVKINPLALVEARTSLEVFDFLEDPNSQDKALE" mobile_element complement(14589488..14590324) /note="source:CACAO_M_S_E7818_F60_scaffold_2 889 1734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14590332..14593283 /note="source:CACAO_M_E71102_F246_scaffold_10 1 2936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14593286..14594198) /note="source:CACAO_M_S_E7818_F60_scaffold_2 23439 24340" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14596817..14597002 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5990 6175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14596872..14597081) /note="source:CACAO_M_E24592_F195_scaffold_4 20612 20805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14597413..14597477) /note="source:CACAO_M_E3884_F22_scaffold_1 13134 13190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14597478..14611503 /note="source:CACAO_M_E48538_F49_scaffold_6 1 14026" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14611504..14612846 /note="source:CACAO_M_S_E4591_F5_scaffold_1 19152 20443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14612769..14616562) /note="source:INTACT506_F233_scaffold_3-int 3583 7368" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14616549..14617127 /note="source:INTACT518_F239_scaffold_2-int 6398 6974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14617699..14619650 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18606 20523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14619566..14619741) /note="source:scaffold_6_CACTA_0702 2 177" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14620565..14620708 /note="source:INTACT47_F12_scaffold_3-int 11550 11687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14628337..14631285) /note="source:CACAO_M_E71723_F228_scaffold_10 1 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14631415..14631454) /note="source:CACAO_M_E52081_F13_scaffold_7 1189 1228" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14633200..14636193) /note="source:CACAO_M_S_E100361_F7_scaffold_9 1 3005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14638013..14638302 /note="source:scaffold_1_CACTA_0024 1077 1366" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14638393..14638455) /note="source:scaffold_6_CACTA_0702 6894 6961" /mobile_element_type="transposon:TIR/CACTA" gene 14640462..14643490 /locus_tag="TCM_028426" /note="dbxref CacaoGD:Thecc1EG028426" mRNA join(14640462..14640740,14642992..14643490) /locus_tag="TCM_028426" /product="Histone H2A protein 9" /inference="alignment:exonerate- protein:2:ricco:29841.m002781" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037984t1" /inference="similar to AA sequence:Phytozome:GSVIVT01035768001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15975t1" CDS join(14640633..14640740,14642992..14643288) /locus_tag="TCM_028426" /note="paralog of Thecc1EG037984t1" /codon_start=1 /product="Histone H2A protein 9" /protein_id="EOY26586.1" /db_xref="Phytozome:GSVIVT01035768001" /db_xref="TAIR:AT1G52740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q71UI9" /translation="MSGKGAKGLITAGKSTKDKDKDKKKPVSRSSRAGLQFPVGRVHR LLKTRVNANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG DEELDTLIKGTIAGGGVIPHIHKSLINKSSKE" gene complement(14644024..14650955) /locus_tag="TCM_028427" /note="dbxref CacaoGD:Thecc1EG028427" mRNA complement(join(14644024..14644409,14644528..14644616, 14644958..14645074,14645208..14645316,14646881..14646971, 14647114..14647192,14647514..14647606,14647977..14648003, 14648140..14648471,14648575..14648754,14648831..14648999, 14650048..14650955)) /locus_tag="TCM_028427" /product="Bromo-adjacent domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29841.m002780" /inference="similar to AA sequence:ricco:29841.m002780" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:PASA:2:TSA:puevd3b027490t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1128t3" mRNA complement(join(14644131..14644409,14644528..14644616, 14644853..14644878,14644958..14645074,14645208..14645316, 14646881..14646971,14647114..14647192,14647514..14647606, 14647977..14648003,14648140..14648471,14648575..14648754, 14648831..14648999,14650048..14650955)) /locus_tag="TCM_028427" /product="Bromo-adjacent domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29841.m002780" /inference="similar to AA sequence:ricco:29841.m002780" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1128t3" mRNA complement(join(14644385..14645074,14645208..14645316, 14646881..14646971,14647114..14647192,14647514..14647606, 14647977..14648003,14648140..14648471,14648575..14648754, 14648831..14648999,14650048..14650480)) /locus_tag="TCM_028427" /product="Bromo-adjacent domain-containing protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29841.m002780" /inference="similar to AA sequence:ricco:29841.m002780" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1128t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1128t3" CDS complement(join(14644557..14644616,14644958..14645074, 14645208..14645316,14646881..14646971,14647114..14647192, 14647514..14647606,14647977..14648003,14648140..14648471, 14648575..14648754,14648831..14648999,14650048..14650401)) /locus_tag="TCM_028427" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29841.m002780" /codon_start=1 /product="Bromo-adjacent domain-containing protein, putative isoform 2" /protein_id="EOY26588.1" /db_xref="TAIR:AT5G11470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RUZ1" /translation="MSHLKEKNSEEKNLGFKWGVEKGVGGKNRDIMFYESFTYEGEEY FVYDCVYFYLGQPEASIGKLVKMCEGPDHAKKVKVVWFMRPSEIRNFLGNYQPRWNEI FLASGQGPGVSNVNPVESIVGKCNVVCISNDRRNPQATEADVRWADYFFCCRFDVGGP AISDVFPDMVDGVKVEHFFNKKKEQKPLGPPNLKSNVKEQTGLPNFSSKLKVKKVIGN TVRDDHSGSRLIPLLKESKTAPVGTSKQVRFPSENTPPRLKTSIPSGGTQHGGSSHCQ VQDKFDKAEVKFPKDSLTNTAEVQPYKKRKLLLDERASRKFDNLHHQQGQDRGTKIDN QLVQVLRRPHADSRNWFKQLPWEQRLERAQESGSLVSLENLDPSYTSAEVEDLVWHAF KEKVEAKMIEKSTFSCPHYGKALIIFKSKEAADAAISHLTKRCLVLADGRPVIAKRET LRKPSKLAGFVGHLTIDRVQHKRQTEEMKKAKSTSHPSQPNNIEYDMGMEWRILQEKS DMWWKALHEQQAKEIQNVRKQLKMKSSS" CDS complement(join(14644577..14644616,14644853..14644878, 14644958..14645074,14645208..14645316,14646881..14646971, 14647114..14647192,14647514..14647606,14647977..14648003, 14648140..14648471,14648575..14648754,14648831..14648999, 14650048..14650401)) /locus_tag="TCM_028427" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29841.m002780" /codon_start=1 /product="Bromo-adjacent domain-containing protein, putative isoform 1" /protein_id="EOY26587.1" /db_xref="TAIR:AT5G11470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RUZ1" /translation="MSHLKEKNSEEKNLGFKWGVEKGVGGKNRDIMFYESFTYEGEEY FVYDCVYFYLGQPEASIGKLVKMCEGPDHAKKVKVVWFMRPSEIRNFLGNYQPRWNEI FLASGQGPGVSNVNPVESIVGKCNVVCISNDRRNPQATEADVRWADYFFCCRFDVGGP AISDVFPDMVDGVKVEHFFNKKKEQKPLGPPNLKSNVKEQTGLPNFSSKLKVKKVIGN TVRDDHSGSRLIPLLKESKTAPVGTSKQVRFPSENTPPRLKTSIPSGGTQHGGSSHCQ VQDKFDKAEVKFPKDSLTNTAEVQPYKKRKLLLDERASRKFDNLHHQQGQDRGTKIDN QLVQVLRRPHADSRNWFKQLPWEQRLERAQESGSLVSLENLDPSYTSAEVEDLVWHAF KEKVEAKMIEKSTFSCPHYGKALIIFKSKEAADAAISHLTKRCLVLADGRPVIAKRET LRKPSKLAGFVGHLTIDRVQHKRQTEEMKKAKSTSHPSQPNNIEYDMGMEWRILQEKS DMWWKALHEVLLHPQSQSNKQRRYKMLGNS" CDS complement(join(14644943..14645074,14645208..14645316, 14646881..14646971,14647114..14647192,14647514..14647606, 14647977..14648003,14648140..14648471,14648575..14648754, 14648831..14648999,14650048..14650401)) /locus_tag="TCM_028427" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29841.m002780" /codon_start=1 /product="Bromo-adjacent domain-containing protein, putative isoform 3" /protein_id="EOY26589.1" /db_xref="TAIR:AT5G11470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RUZ1" /translation="MSHLKEKNSEEKNLGFKWGVEKGVGGKNRDIMFYESFTYEGEEY FVYDCVYFYLGQPEASIGKLVKMCEGPDHAKKVKVVWFMRPSEIRNFLGNYQPRWNEI FLASGQGPGVSNVNPVESIVGKCNVVCISNDRRNPQATEADVRWADYFFCCRFDVGGP AISDVFPDMVDGVKVEHFFNKKKEQKPLGPPNLKSNVKEQTGLPNFSSKLKVKKVIGN TVRDDHSGSRLIPLLKESKTAPVGTSKQVRFPSENTPPRLKTSIPSGGTQHGGSSHCQ VQDKFDKAEVKFPKDSLTNTAEVQPYKKRKLLLDERASRKFDNLHHQQGQDRGTKIDN QLVQVLRRPHADSRNWFKQLPWEQRLERAQESGSLVSLENLDPSYTSAEVEDLVWHAF KEKVEAKMIEKSTFSCPHYGKALIIFKSKEAADAAISHLTKRCLVLADGRPVIAKRET LRKPSKLAGFVGHLTIDRVQHKRQTEEMKKAKSTSHPSQPNNIEYDMGMEWRILQEKS DMWWKALHEVLTS" gene complement(14651732..14652768) /locus_tag="TCM_028428" /note="dbxref CacaoGD:Thecc1EG028428" mRNA complement(join(14651732..14652175,14652278..14652385, 14652465..14652529,14652719..14652768)) /locus_tag="TCM_028428" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage" CDS complement(join(14651950..14652175,14652278..14652385, 14652465..14652529,14652719..14652742)) /locus_tag="TCM_028428" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26590.1" /translation="MPDSRRWKEILDTYIAPTDSKKISSHRAGITVVGRRATLEKSEK LFTYDGHLVMAANVKHSNMKRWRKAKPTSHFAQLNNTLENDMAMELALNARAVRWVVE PDTCGATDSLWISFYFFSNLMLSQLVCAFSEQNKRNSW" gene complement(14654184..14660690) /locus_tag="TCM_028429" /note="dbxref CacaoGD:Thecc1EG028429" mRNA complement(join(14654184..14655153,14655487..14655687, 14656464..14656667,14657683..14657811,14658039..14658773, 14659574..14659887,14659982..14660690)) /locus_tag="TCM_028429" /product="Alpha/beta-hydrolase domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017215001" /inference="similar to AA sequence:Phytozome:GSVIVT01017215001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3271t1" mRNA complement(join(14654399..14655153,14656463..14656667, 14657683..14657811,14658039..14658773,14659574..14659887, 14659982..14660688)) /locus_tag="TCM_028429" /product="Alpha/beta-hydrolase domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017215001" /inference="similar to AA sequence:frave:gene06032" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc722t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3271t1" CDS complement(join(14655031..14655153,14655487..14655687, 14656464..14656667,14657683..14657811,14658039..14658773, 14659574..14659887,14659982..14660249)) /locus_tag="TCM_028429" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Alpha/beta-hydrolase domain-containing protein isoform 1" /protein_id="EOY26591.1" /db_xref="Phytozome:GSVIVT01017215001" /db_xref="TAIR:AT1G15490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XI20" /translation="MVMKAWMVVEKGRRIVRTAFFMVAMLASLLASSLPLLVAVGDIM VPFLLLSSFTCVTCYGFNQQFRRYAFKNSLADIPLVSILRSIIITCVYSMCDGPALSH GPYLGTVTLCSFASILLLSVKACVFTVSSQIEAEASSGSSLARQRLHLKKSWGMPVLF LSSVVFALGHTVVAYRTSCRARRKLLFHRVDPEAVLSCKNVFSGFQKVPRSPTPSAGK TPKSDSETRRKPFGQSRDEGELPVRLLADMDSLFITLQGLSIHYKLCFPGSPPRSLSS TTFLEPKLCSTPQVAPGKLKLDRPALSVLSKTQYHHLHRSYSNQFHSSSLYAPLLDGS PTSPVLSKDIPVLSLEDTVAKVETSHLNSGTLQQDIEANGQFGIVLVHGFGGGVFSWR HVMGVLARQVGCAVAAFDRPGWGLTSRPSRKDWEGKELPNPYKLETQVDLLLSFCSEM GFSSVVLVGHDDGGLLALKAVQKVQASMNSFNITIKAVVLLSVSLSREVVPAFARILL RTSLGKKHLVRPLLRTEITQVVNRRSWYDATKLTTEVLSLYKAPLCVEGWDEALHEIG RLSYETILSPQNATSLLKAVEEMPILVIAGAEDALISLKSSQAMASKLVNSRLVAISG CGHLPHEECPKSLLAAISPFIGRLLPKPELHRQ" CDS complement(join(14655113..14655153,14656463..14656667, 14657683..14657811,14658039..14658773,14659574..14659887, 14659982..14660249)) /locus_tag="TCM_028429" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene06032" /codon_start=1 /product="Alpha/beta-hydrolase domain-containing protein isoform 2" /protein_id="EOY26592.1" /db_xref="TAIR:AT1G15490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XI20" /translation="MVMKAWMVVEKGRRIVRTAFFMVAMLASLLASSLPLLVAVGDIM VPFLLLSSFTCVTCYGFNQQFRRYAFKNSLADIPLVSILRSIIITCVYSMCDGPALSH GPYLGTVTLCSFASILLLSVKACVFTVSSQIEAEASSGSSLARQRLHLKKSWGMPVLF LSSVVFALGHTVVAYRTSCRARRKLLFHRVDPEAVLSCKNVFSGFQKVPRSPTPSAGK TPKSDSETRRKPFGQSRDEGELPVRLLADMDSLFITLQGLSIHYKLCFPGSPPRSLSS TTFLEPKLCSTPQVAPGKLKLDRPALSVLSKTQYHHLHRSYSNQFHSSSLYAPLLDGS PTSPVLSKDIPVLSLEDTVAKVETSHLNSGTLQQDIEANGQFGIVLVHGFGGGVFSWR HVMGVLARQVGCAVAAFDRPGWGLTSRPSRKDWEGKELPNPYKLETQVDLLLSFCSEM GFSSVVLVGHDDGGLLALKAVQKVQASMNSFNITIKAVVLLSVSLSREVVPAFARILL RTSLGKKHLVRPLLRTEITQVVNRRSWYDATKLTTEVLSLYKETGCNIWMWPSSA" gene 14669902..14673777 /locus_tag="TCM_028430" /note="dbxref CacaoGD:Thecc1EG028430" mRNA join(14669902..14670214,14671058..14671589, 14672325..14673777) /locus_tag="TCM_028430" /product="Lysophospholipase 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s17500.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s05780.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08739t00001" CDS join(14669948..14670214,14671058..14671589, 14672325..14672983) /locus_tag="TCM_028430" /codon_start=1 /product="Lysophospholipase 2" /protein_id="EOY26593.1" /db_xref="Phytozome:POPTR_0003s05780.1" /db_xref="TAIR:AT1G52760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C942" /translation="MGNVDQLVQKKGRIESFGNCDLLGMRLNIVEDLLQIRINANARE DQVLIDAARRFASNEWGLVRVGPPTNQEWEYVIVNNQSHGALSKYAALSLPTYPYPQP IIPPSLFQVRFPLLSVLPSLPFQQPQQLTLLCNTFLCFFLWSFLLLSKYTHANSRCLP GTIRSAMEGQKPANFWGNLPEEEYYTSQGVRNSKSYFDTPNGKLFTQSFLPLDQKVKA TVYMTHGYGSDTGWLFQKICINFTTWGYAVFAADLLGHGRSDGLRCYLGDMEKVAATS LSFFKHVRYSEEYKDLPAFLFGESMGGAATMLMYFQSEPDFWTGLIFSAPLFVMPENM KPSKVRLFMYGLLFGLADTWATMPDNKMVGKAIKDPEKLKIIASNPRRYTGPPRVGTM RELARVCQYIQDNFSKVKAPFLTVHGTSDGVTCPTSSKLLYEKASSTDKSLKLYDGMY HSLIQGEPDENADLVLKDMREWIDERVERYGSKKC" mobile_element complement(14674435..14674555) /note="source:CACAO_M_S_E14849_F156_scaffold_2 683 802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14676550..14676637 /note="source:scaffold_2_CACTA_0262 697 780" /mobile_element_type="transposon:TIR/CACTA" gene complement(14680583..14681507) /locus_tag="TCM_028433" /note="dbxref CacaoGD:Thecc1EG028433" mRNA complement(join(14680583..14681306,14681395..14681507)) /locus_tag="TCM_028433" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02974t00002" CDS complement(14680788..14680949) /locus_tag="TCM_028433" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26594.1" /translation="MALAAADIALAGHGRCRPKVINIGCLKVSNDCDVPLCYLLFLKC QALTLCIKA" gene 14683743..14689803 /locus_tag="TCM_028434" /note="dbxref CacaoGD:Thecc1EG028434" mRNA join(14683743..14685121,14686551..14686682, 14687638..14687988,14688078..>14688313) /locus_tag="TCM_028434" /product="TLC ATP/ADP transporter isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05760.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17520.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial3; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc6t1; inference alignment:Newbler:10:TSA:cgbaB_g04530t00001" mRNA join(14683771..14685121,14686551..14686805, 14687419..14687551,14688076..14688758) /locus_tag="TCM_028434" /product="TLC ATP/ADP transporter isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05760.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s05760.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc6t1; inference alignment:Newbler:10:TSA:cgbaB_g04530t00001" mRNA join(14683806..14685121,14686551..14686805, 14687419..14687562,14687641..14687988,14688078..14688767, 14689572..14689803) /locus_tag="TCM_028434" /product="TLC ATP/ADP transporter isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05760.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s05760.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04530t00001" CDS join(14684366..14685121,14686551..14686805, 14687419..14687562,14687641..14687988,14688078..14688437) /locus_tag="TCM_028434" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="TLC ATP/ADP transporter isoform 1" /protein_id="EOY26595.1" /db_xref="Phytozome:POPTR_0003s05760.1" /db_xref="TAIR:AT1G80300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39002" /translation="MEAVLQTRGLLSLPPNPTRARSLLNPSQGLKQRLFASKPLGGLS LSYKKVPSVVAKPNGLFAEGKNFICKAEAAAAADGQPLFGEIGETEKPKFLGIELVTL KKIIPLGLMFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAVGFMLLY TKLANVLSKQALFYTVIVPFIAFFGAFGFMLYPLSNYIHPQALSDKLLAVLGPRFLGP LAIMRIWSFCLFYVMAELWGSVVISVLFWGLANQITTVDEAKRFYPLFGLGANIALIF SGRTVKYFSNLRKNLGPGVDGWAISLKGMMSIVVLMGLAICFLYWWVNKFVPLPTRSK KKKEKPKMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEY SSFMGDFSTATGIATFTMMLLSQFIFDKYGWGVAAKITPTVLLLTGVGFFSLILFGDP LGLGLAKFGMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAI DVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGVLLVIVLAWLSAAKSLDTQFTAL RKEEELEKEMERAAVKIPVVSESGNGSLASGSSLNPAAGDSTGSSSETSTPSNI" CDS join(14684366..14685121,14686551..14686805, 14687419..14687551,14688076..14688437) /locus_tag="TCM_028434" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="TLC ATP/ADP transporter isoform 2" /protein_id="EOY26596.1" /db_xref="Phytozome:POPTR_0003s05760.1" /db_xref="TAIR:AT1G80300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39002" /translation="MEAVLQTRGLLSLPPNPTRARSLLNPSQGLKQRLFASKPLGGLS LSYKKVPSVVAKPNGLFAEGKNFICKAEAAAAADGQPLFGEIGETEKPKFLGIELVTL KKIIPLGLMFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAVGFMLLY TKLANVLSKQALFYTVIVPFIAFFGAFGFMLYPLSNYIHPQALSDKLLAVLGPRFLGP LAIMRIWSFCLFYVMAELWGSVVISVLFWGLANQITTVDEAKRFYPLFGLGANIALIF SGRTVKYFSNLRKNLGPGVDGWAISLKGMMSIVVLMGLAICFLYWWVNKFVPLPTRSK KKKEKPKMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKQVKGKAAIDVV CNPLGKSGGALIQQFMILTFGSLANSTPYLGGVLLVIVLAWLSAAKSLDTQFTALRKE EELEKEMERAAVKIPVVSESGNGSLASGSSLNPAAGDSTGSSSETSTPSNI" CDS join(14684366..14685121,14686551..14686682, 14687638..14687988,14688078..>14688311) /locus_tag="TCM_028434" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="TLC ATP/ADP transporter isoform 3" /protein_id="EOY26597.1" /db_xref="Phytozome:POPTR_0001s17520.1" /db_xref="TAIR:AT1G80300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39002" /translation="MEAVLQTRGLLSLPPNPTRARSLLNPSQGLKQRLFASKPLGGLS LSYKKVPSVVAKPNGLFAEGKNFICKAEAAAAADGQPLFGEIGETEKPKFLGIELVTL KKIIPLGLMFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAVGFMLLY TKLANVLSKQALFYTVIVPFIAFFGAFGFMLYPLSNYIHPQALSDKLLAVLGPRFLGP LAIMRIWSFCLFYVMAELWGSVVISVLFWGLANQITTVDEAKRFYPLFGLGANIALIF SGRTVKYFSNLRKNLGPGVDQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKYG WGVAAKITPTVLLLTGVGFFSLILFGDPLGLGLAKFGMTPLLAAVYVGAMQNIFSKSA KYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANST PYLGGVLLVIVLAWLSAAKSLDTQFTALRKEEELEKEMERA" gene 14689842..14692674 /locus_tag="TCM_028436" /note="dbxref CacaoGD:Thecc1EG028436" mRNA join(14689842..14690986,14691730..14692674) /locus_tag="TCM_028436" /product="Phototropic-responsive NPH3 family protein" /inference="alignment:exonerate- protein:2:ricco:29841.m002774" /inference="similar to AA sequence:ricco:29841.m002774" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15987t1" CDS join(14690261..14690986,14691730..14692275) /locus_tag="TCM_028436" /note="dbxref ricco:29841.m002774" /codon_start=1 /product="Phototropic-responsive NPH3 family protein" /protein_id="EOY26598.1" /db_xref="TAIR:AT3G15570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C941" /translation="MMKKLALQESITFPTQSAPDCWFDDACILDMDYFVKTISGIKAK GVRPDLIGSIIAHYASKWLPDLSSNNTEKGLTNFEESSPESVTASWMKKRFFVETLVG ILPPERDSVPCNFLLRLLRTANMVGVEPSYRAELEKRISWQLDQASLKELMIPSFSHT CGTLLDVELVIRLVKRFASLDEGARSGAALVKAAKLVDCYLAEAALDTNLSLDEFIAL GGALPSHARAMDDGLYRAIDTYLKAHPGVPKQDRKVLCRLIDSRKLSPEASLHAAQNE RLPVRAVIQVLFSEQTKLSRHIDWSGSFSGTRSPNPGLEAPARCLSKREMNAQQMEIK KLKEDLLKVQSQCIAMQMQMEKMLDKKKGFFRWRKLGLKPSFKSSVSVFEKIEEGEGE GEVAFGLQTPMDMKAKLVRGRTPPKWRKSMP" mobile_element 14693898..14695321 /note="source:CACAO_M_E48542_F9_scaffold_6 1 1424" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14695782..14698047) /note="source:INTACT44_F119_scaffold_6-int 6653 8952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14696065..14698285 /note="source:scaffold_4_CACTA_0502 2147 4374" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14698964..14700726 /note="source:INTACT146F_F14_scaffold_2-int 2103 4938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14701313..14701828) /note="source:CACAO_M_E24592_F195_scaffold_4 19420 19934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14705765..14708721) /note="source:CACAO_M_E13147_F230_scaffold_3 1 2911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14708722..14708781) /note="source:CACAO_Mariner_E229_scaffold_9 12526 12582" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(14709780..14709965) /note="source:INTACT44_F119_scaffold_6-int 1181 1383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14717047..14717188) /note="source:CACAO_M_E24592_F195_scaffold_4 779 918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14717754..14719001 /note="source:CACAO_M_E35511_F5_scaffold_5 2259 3495" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14718670..14720341) /note="source:scaffold_9_CACTA_0927 4276 5977" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14720344..14720806 /note="source:INTACT465_F78_scaffold_6-int 9720 10182" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14721917..14722469 /note="source:INTACT465_F78_scaffold_6-int 11164 11716" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14722725..14723926) /note="source:CACAO_M_E4027_F323_scaffold_2 6198 7415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14728038..14728084 /note="source:CACAO_M_S_E101405_F231_scaffold_9 1446 1492" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14730293..14730441) /note="source:scaffold_9_CACTA_0929 9975 10121" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14730361..14730456 /note="source:CACAO_M_E57469_F369_scaffold_9 1246 1342" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14730469..14734280 /locus_tag="TCM_028440" /note="dbxref CacaoGD:Thecc1EG028440" mRNA 14730469..14734280 /locus_tag="TCM_028440" /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017209001" /inference="similar to AA sequence:Phytozome:GSVIVT01017209001" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1031t3" CDS 14730752..14733373 /locus_tag="TCM_028440" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /protein_id="EOY26599.1" /db_xref="Phytozome:GSVIVT01017209001" /db_xref="TAIR:AT1G15510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HX75" /translation="MAFSAKTPRTLINADHPNALNTNNHSPKSIYFSNQRKAHQISST KPHQELSVLNTNSLNTHNPNSHLHLLCLNGHLQQALNYLHSMQELQIPLDEDAAIAMV RLCEWKRAFEEGSKVYCFISNSGDPLSLRLGNALLSMFVRFRNLGDAWYVFGKMQERD VFSWNVLIGGYAKKGFFDEALCLYHRMLWVGFKPDVYTFPCVLRTCGAVPNLKRGKEV HVHVIRFGFEADVDVVNALVTMYVKCGDLVRARLLFDKMTRRDRISWNAIISGYFENG ECLEGIRLFFMMREHCVDPDLMTMTSVVSACESLGDDRLGREIHGYVTVTGMSDDVSV CNSLIQMYSSLGRWEAAEKVFDRMERRDVVSWTAMISGYENNVLPDKAVDTYRTMEVQ GFIPDEITLASVLSACACLRKLDMGIKLHELAKRAGLISYIIVANTLIDMYSKCKCID KALEVFHNIPDKDVISWTAIILGLRLNNRCFEALIFFRQMKLSLKPNSVTLVTVLSAC ARIGALICGKEIHAYALRTGMGLEGFLPNALLDMYVRCGRMGPARNQFNSQKKDVAAW NILMTGYAQRGQGTLAVEFFNKMIESNVNPDEITFIPLLCACSKSGMVTEGLMFFNSM ELEYGVTPNLKHYACVVDLLGRAGQLQKAYEFIMEMPIKPDPAIWGALLNACKIHRQV GLGEFAAQRIFESDTRSVGYYVLLCNLYADNGKWDEVAKVRKMMKDNGLTIDPGCSWV EVKGKIHAFLSGDDFHPQINEINAVLEGIYEKMKVAGLDVPKGDSTDDVEISKAEIFC GHSERLAVAFGLINTVPGMPIWVTKNLYMCQSCHSTIKFISKIVRREITVRDTEQFHH FKDGTCSCGDVGILGTT" gene complement(14734404..14738251) /locus_tag="TCM_028441" /note="dbxref CacaoGD:Thecc1EG028441" mRNA complement(join(14734404..14735967,14736061..14736382, 14736480..14736706,14736800..14736962,14737057..14737175, 14737286..14737401,14737524..14738251)) /locus_tag="TCM_028441" /product="Gb:AAF35421.1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05730.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s05730.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc922t1" CDS complement(join(14734869..14735967,14736061..14736382, 14736480..14736706,14736800..14736962,14737057..14737175, 14737286..14737401,14737524..14737682)) /locus_tag="TCM_028441" /codon_start=1 /product="Gb:AAF35421.1, putative" /protein_id="EOY26600.1" /db_xref="Phytozome:POPTR_0003s05730.1" /db_xref="TAIR:AT3G15550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LRP9" /translation="MAVDYAFTDEEMLIDEGLGYPRAYAKICRDPSLCPYNHGPPFTF MPYALQQNESLRAKELDQMFPTIDPKARPTAKPKIFINLLWKQLSHLGNAGFDPEVIR VDPYGNVLYYHADSASPLSWDIDHWFPCSRGGLTVASNLRILQWQVCKKKHNKLEFQV PWWDFQLGISVNQFLSIFASRKSDFRHRAFSFLFAEGENEEINSSQTVESHSFPQHFM QSKEQFGLAPAAVVVTRRELYDTSSALKSLDYNRQIRPQSPIIAARKKKSSVLKENEN PDFITNPYQAIVMARDSLKQREETQKMQSEIRKLDEEVNEMRRKNDEEKLAIQDLEVE LIKRRRRAEKCRRLAEAQSSYRTMLEKMIRDAMHQSVVYKEQVRLNQAAANALMARLE AQKAICDASEKELHKKFKQRDELEKQIRPEWEHARKRSRMDDTFLEGQDSKTVLYLPG IRPRTPSHKELRLFLEEEHKASVAGLSSNEDQKHEEIEEELAITARNAARGKREEHDK AIAALEGEKSIVQKFQRLEIEEERQEIQIPIAEETERADDEESRRQRGKGNVERWLQM LLENTQDELDPQNADAEEVTGIDEIIEKLDLKYPQKEKEVMTQIHEKQQGVGEKDVGE KKEKIVEIEGSKTPRRSSNACEVAHISEGRLGSRKQRIEKNGKERIITRSESARAFRR IPSSPSLIFGMKKGVECMRKKPIVTSDDEEDYAAGNNFLKSSIRTIKKAVKI" gene complement(14741777..14746860) /locus_tag="TCM_028442" /note="dbxref CacaoGD:Thecc1EG028442" mRNA complement(join(14741777..14741970,14742232..14742399, 14742641..14742786,14742901..14743217,14743296..14743791, 14745015..14745185,14746328..14746371,14746820..14746860)) /locus_tag="TCM_028442" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004065t1" /inference="similar to AA sequence:Phytozome:Glyma07g34840.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" CDS complement(join(14741890..14741970,14742232..14742399, 14742641..14742786,14742901..14743217,14743296..14743791, 14745015..14745129)) /locus_tag="TCM_028442" /note="paralog of Thecc1EG004065t1; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26601.1" /db_xref="Phytozome:Glyma07g34840.1" /db_xref="TAIR:AT4G23160.1" /translation="MTKLLLVRVIASTSSYGSMEVKVSQYEGTGYHNGSLREGKVVIS RNVAFAENDKWNWEQQQIMSTTPPVYSIESLNIDDDELDVDQTVDEASIKKTRSIQDI YDKCHVALLELASFDKALKHAKWNAAMKEEIKMTEQNNTWSLVDRTRHRQVIGVNRIF KRKLNENGSLNRCNARLVAKVYAQLASVDYQETFATVARLETIRLAKEIYVEQPMGFK IEFGRDKVYKLHKALYGLKQAPHAWYSRIDTYLNDQEFCKSVNKATLHTLKKSNDAPL IVSLYVDDLLIIEGSAYSVNEFKAQMQREFKMSDCKAVATPLIANEIQFVNARDNLEN PSQYRSLIGGLLYICTTRPKIMFAKIVAQSTAKAEYVATASTTNQAIWWRKVSFDLGM SPKNATKLSVDNKSAISMAKNQVDFGDVSAWMEWHITCNFACSLTFHS" mobile_element complement(14745032..14746402) /note="source:scaffold_3_CACTA_0382 10510 11900" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14746072..14746461) /note="source:CACAO_M_E5326_F22_scaffold_2 20922 21351" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14746471..14747033) /note="source:scaffold_4_CACTA_0490 2735 3363" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14746691..14747142) /note="source:CACAO_M_S_E101631_F270_scaffold_9 9068 9600" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14750392..14752975) /note="source:CACAO_M_E3659_F345_scaffold_1 1 2643" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14752907..14752999 /note="source:CACAO_M_E11054_F12_scaffold_2 13448 13542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14753213..14758943 /note="source:INTACT566_F257_scaffold_7-int 1 5638" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14758945..14759023) /note="source:CACAO_M_E27_F84_scaffold_1 390 470" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14759098..14761732 /note="source:CACAO_M_E52239_F256_scaffold_7 19813 22448" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14761721..14762089 /note="source:INTACT566_F257_scaffold_7-int 393 739" /mobile_element_type="retrotransposon:LTR/Copia" gene 14763505..14765959 /locus_tag="TCM_028444" /note="dbxref CacaoGD:Thecc1EG028444" mRNA 14763505..14765959 /locus_tag="TCM_028444" /product="Sulfate transmembrane transporters" /inference="alignment:exonerate- protein:2:ricco:29841.m002770" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038294t1" /inference="similar to AA sequence:ricco:29841.m002770" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05928t00001" CDS 14763575..14764963 /locus_tag="TCM_028444" /note="dbxref ricco:29841.m002770; paralog of Thecc1EG038294t1" /codon_start=1 /product="Sulfate transmembrane transporters" /protein_id="EOY26602.1" /db_xref="TAIR:AT1G80310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WP36" /translation="MDQQSPSSSTTTTPLLLQHQPWWRRHFHIKNTLSSELSGAVGDL GTFIPIVLTLTLVSHLDLSTTLIFTALYNIATGLLFHIPMPVQPMKSIAAVAVSETPH LTTSQIATAGASTAAVLLLLGATGLMSTLYRLLPLPVVRGVQLSQGLSFAFSAIKYIR YNQDFIASKSTTPRAWLGLDGLILALSSLLFLVIFTGSGDHHTGDESNDNESRGRSSK RLRIMSSIPAALIVFLFGLVLCFIRDPTIFSDIKFGPSKIGFLSITWEDWKIGFLKGA VPQIPLSILNSVIAVCKLSGDLFPDRELSAAKVSVSVGVMNLVGCWFGAMPVCHGAGG LAGQYRFGARSGWSVVFLGIGKLVIGLVFGNSFVRILSQFPIGILGVLLLFAGIELAM ASRDMNSKEESFVMLVCAAVSLTGSSAALGFVCGILLFLLLKLRRLQCSGSMFSKFKS GSAIDDETSSIP" gene 14767947..14772121 /locus_tag="TCM_028445" /note="dbxref CacaoGD:Thecc1EG028445" mRNA 14767947..14772121 /locus_tag="TCM_028445" /product="Uncharacterized protein" /inference="similar to AA sequence:frave:gene06016" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc515t1" CDS 14768408..14771593 /locus_tag="TCM_028445" /note="dbxref frave:gene06016" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26603.1" /db_xref="TAIR:AT1G52780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IEK8" /translation="MKSVYLAVVVYIMNGMFIMGLTNYVPEAEFEFQRESAAEVEYNY DRIGEVKKHCKSVLSSSSEFKAEGNRIADIKEELNFGYGNWRQDIADAPIMPFDDRDI PKNLSQAPSNIVSFWITDVDHLHQTKKSVSVSGILMLGIALDTSFAERPYEGSPRFQI WPSHTQLAISFEGIYTETKQNGGERVMCLLGNAMLPSRESDSNNPWEWLKGSDLNYNQ ALLLQDDQILLVLHYPLTHTLTNRVIRGEMKSLNPKSNAKYFDQVHILAQMLKSTKYQ FGSEKIVSKACDPYPYQDSLMDAGIEIYKGDKFCTILEQVTNSGAFTVVPNWKCNGTD DYCCKMGPFVSDKEIKATNGSFKDVILYMQDVRCKPTHGHQNASSARVAAVFRAVPAS EDQYRVRWRSGLSNMTLAVEGMWNSSSGQLCMVGCLGIVDADGSSCNSRICLYIPLSF SIKQRSIIVGSISSIGKGNKVYFPLSFERLVRPSELWNYFRSSHPYYGYSKIQSAGAI LEKNEPFSFGTLVKKSLLQFPKLEDTDAFLSSLSLLAEDLTLQISAVPDPFPNSHPPR VDIQMDISSLGPLFGRYWYSTNVTTTEEETPYHTKAESTEKQLLLNVSAQLTITGKDY SNFSVLFLEGLYDPHFGRMYLVGCRDVRASWKILLQSMDLESGLDCLIEVIVSYPPTT ARWLVNPTARISIASQRTEDDPLYFGMIKLQTLPIIYRKQREDILSHRGVEGILRILT LSLAIACILSQLFYLKQNLDSAPFISLVMLGVQALGYSFPLITGAEALFKREASDSYE MQSYDLEKSQWMNMIDYTVKLLVLVMFLLTLRLCQKVWKSRIRLLTRTPLEPHRVPSD KRVIIATLTIHVIGYIVVLIIHTVNTSQRPLQTDRFIDSRGHSQTLREWEIELEEYIG LVQDFFLLPQVIGNFLWQIDCKPLRKLYYIGITVVRLLPHFYDYIRAPVPNPYFAEEF EFVNPTLDFYSNFGDVAIPIFAVFLAVAVYCQQRWNYEQLSLILSFRQCRLLPAGSRV YERLPSKPFEAELASDVNGNTSHKLEHDDEE" mobile_element complement(14771871..14772096) /note="source:INTACT733_F316_scaffold_2-int 3987 4215" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14772095..14772145) /note="source:CACAO_M_S_E33_F76_scaffold_1 4419 4471" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14773292..14775102 /note="source:CACAO_M_S_E119572_F76_scaffold_9 1153 3004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14776296..14776847 /note="source:CACAO_M_E49559_F88_scaffold_7 5804 6334" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14776849..14777254 /note="source:INTACT83_F5_scaffold_9-int 1176 1540" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14777366..14777818) /note="source:CACAO_M_E50500_F14_scaffold_7 9729 10181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14777684..14787710 /note="source:INTACT288_F14_scaffold_2-int 96 9490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14787701..14787753 /note="source:CACAO_M_E5899_F5_scaffold_2 4629 4677" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14789992..14790665 /note="source:INTACT83_F5_scaffold_9-int 3985 4663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14790638..14792925 /note="source:INTACT83_F5_scaffold_9-int 4990 7277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14792926..14793827 /note="source:CACAO_M_E4063_F12_scaffold_2 4908 5817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14794751..14795234 /note="source:CACAO_M_E4063_F12_scaffold_2 7251 7726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14797899..14798107 /note="source:INTACT83_F5_scaffold_9-int 12432 12652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14798302..14798916 /note="source:CACAO_M_E49559_F88_scaffold_7 10225 10846" /mobile_element_type="retrotransposon:LTR/Copia" gene 14798782..14818086 /locus_tag="TCM_028448" /note="dbxref CacaoGD:Thecc1EG028448" mRNA join(14798782..14798902,14799835..14800328, 14810068..14810505,14811003..14811123,14811245..14811333, 14811457..14811541,14811659..14811818,14811952..14812028, 14812338..14812391,14812482..14812572,14812663..14812964, 14813049..14813330,14813422..14813738,14813852..14814012, 14814109..14814212,14814299..14814455,14814542..14814670, 14814752..14814912,14815029..14815361,14815783..14816073, 14816162..14816245,14816345..14816478,14816614..14816841, 14816927..14817098,14817191..14817445,14817570..14818086) /locus_tag="TCM_028448" /product="Pleiotropic drug resistance 12" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s17740.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038349t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s14650.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc781t1" mobile_element 14804420..14806006 /note="source:CACAO_M_S_E89272_F5_scaffold_8 6729 8226" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(14810168..14810505,14811003..14811123, 14811245..14811333,14811457..14811541,14811659..14811818, 14811952..14812028,14812338..14812391,14812482..14812572, 14812663..14812964,14813049..14813330,14813422..14813738, 14813852..14814012,14814109..14814212,14814299..14814455, 14814542..14814670,14814752..14814912,14815029..14815361, 14815783..14816073,14816162..14816245,14816345..14816478, 14816614..14816841,14816927..14817098,14817191..14817445, 14817570..14817836) /locus_tag="TCM_028448" /note="paralog of Thecc1EG038349t1" /codon_start=1 /product="Pleiotropic drug resistance 12" /protein_id="EOY26604.1" /db_xref="Phytozome:POPTR_0001s14650.1" /db_xref="TAIR:AT1G15520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HX55" /translation="MEGGDIYKASSSLRGSLRAGSSSIWRSNTVEAFSRSSRDEDDEE ALKWAALEKLPTVARLRKGILTSSQGGANEIDVHDLGWQEKRTLLERLVKVAEEDNEK FLLKLKNRIDRVGIDLPTIEVRFEHLNIDAEAFVGSRALPTVLNFTTSIFEGFLNEVG ILSSRKKHLTILNDVSGIIKPGRLTLLLGPPSSGKTTLLLALAGKLDPALKCSGRVTY NGHGMHEFVPERTAAYISQNDLHIGEMTVRETLAFSARCQGVGDRYEMLAELSRREKQ ANIKPDPDIDVFMKAVATEGQEANVITDYILKILGLEICADTMVGDEMLRGISGGQRK RVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVNSLKQTVHILNGTAVISLLQPAPET YDLFDDIILLSDGRVVYQGRREHVLSFFESMGFRCPERKGVADFLQEVTSRKDQMQYW IRRDQPYRFVTANEFAEAFQSFHVGMQLGDELGTPFEKTKSHPAALTTKKYGVGLKEL AKACISREYLLMKRNSFVYIFKFMQITVMAFITMTLFLRTEMKRDSVEWGQIYMGALF FGMITIMFNGMSEISMTIAKLPVFYKQRDLLFFPSWAYALPTWILKIPITFVEVAIWV FLTYYVIGFDPNVERLFRQYFILVLVNQMASGLFRFIAATGRNMIVSNTFGSFALLVL FALGGFVLSREDIKKWWIWGYWISPMMYGQNALMVNEFLGNQWNHVRPNVTESVGIEV LKARGFFQDPHWYWIGVGAMIGFTLLFNFGFTLALTYLNSFEKPRAVISKDSVSNEQE NGVGAGGSIQLSNYESSSSHATKSEIQDDIRRSTSSKSSSMTEATVGALGNKKKGMVL PFEPHSITFDDVIYSVDMPQEMKEQGVTEDRLVLLKGVSGAFRPGVLTALMGVSGAGK TTLMDVLAGRKTGGFIDGNITVSGYPKKQETFARVSGYCEQNDIHSPHVTVYESLLYS AWLRLPAEVNAETRKMFIEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELV ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM KRGGQEIYVGPLGHHSKHLIKYFEGIQGVSKIKDGYNPATWMLEVSTTAQELALGVDF ADIYKNSELYRRNKALIQDLSKPAPSTKELYFPTQYSQPFLTQCQACLWKQHLSYWRN PPYTAVRFLFTTVIALMFGTLFWDLGTKTKRQQDLTNAMGSMYAAVLFLGIQNAASVQ PVVAVERTVFYRERAAGMYSAMPYAIGQVLIELPYIFVQSAVYGCIVYAMIGFEWTAA KFFWYLFFMYFTLLYFTFYGMMAVAVTPNHHIAAIVSSAFYGLWNLFSGFIIPRPSIP VWWRWYYWICPVSWTFYGLVVSQFGDIQDTLEDGSNGETVEQYLRNVFDFKHEFLGVV AAVILGFTVLFGGIFTVSIKVFNFQRR" mobile_element complement(14821626..14822111) /note="source:INTACT215F_F14_scaffold_3-int 7155 7640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14823773..14824567 /note="source:CACAO_M_S_E6027_F12_scaffold_2 6769 7564" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14825189..14826162) /note="source:CACAO_M_E11662_F12_scaffold_2 11218 12171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14828262..14828832 /note="source:CACAO_M_S_E6027_F12_scaffold_2 4049 4634" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14829806..14829846) /note="source:CACAO_M_S_E146091_F272_scaffold_11 9126 9166" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14829847..14832163 /note="source:CACAO_M_E10449_F80_scaffold_2 1 2304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14832403..14834012) /note="source:CACAO_M_E57859_F86_scaffold_9 5031 6640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14834004..14834182 /note="source:CACAO_M_E11415_F328_scaffold_2 5103 5281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14834097..14834184) /note="source:CACAO_M_S_E4260_F7_scaffold_1 2817 2900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14834185..14836994 /note="source:CACAO_M_E54_F87_scaffold_1 3 2815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14836995..14838576 /note="source:CACAO_M_S_E51867_F7_scaffold_4 5734 7315" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14838677..14839863 /note="source:CACAO_M_S_E51867_F7_scaffold_4 7352 8530" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14839862..14844905 /note="source:INTACT470_F80_scaffold_3-int 4347 9383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14845786..14847698 /note="source:INTACT504_F7_scaffold_1-int 6985 8923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14847699..14848328) /note="source:CACAO_M_S_E14196_F7_scaffold_2 2357 2984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14848329..14849433 /note="source:CACAO_M_S_E14649_F328_scaffold_2 10207 11302" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14849427..14849568 /note="source:CACAO_M_E13038_F22_scaffold_3 12474 12615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14849597..14852561 /note="source:CACAO_M_S_E83877_F72_scaffold_6 1 2965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14854218..14854550) /note="source:CACAO_M_E49857_F85_scaffold_7 20684 21045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14855129..14855538) /note="source:CACAO_M_E13038_F22_scaffold_3 13733 14150" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14858058..14858993 /note="source:CACAO_M_S_E14649_F328_scaffold_2 321 1259" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14858998..14861916 /note="source:CACAO_M_S_E68170_F83_scaffold_6 1 2913" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14861917..14863659 /note="source:scaffold_5_CACTA_0601 4561 6210" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14861924..14863874 /note="source:CACAO_M_S_E14649_F328_scaffold_2 11065 13007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14863882..14873959 /note="source:CACAO_M_E48588_F7_scaffold_6 1 10078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14874128..14876904 /note="source:CACAO_M_E48590_F98_scaffold_6 1 2777" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14879458..14880843 /note="source:CACAO_M_S_E84376_F22_scaffold_6 17125 18571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14880844..14881384 /note="source:INTACT135_F42_scaffold_4-int 3226 3768" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14881485..14882140 /note="source:INTACT135_F42_scaffold_4-int 5299 5953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14883067..14883725 /note="source:INTACT135_F42_scaffold_4-int 4127 4785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14883828..14884202 /note="source:INTACT135_F42_scaffold_4-int 5965 6340" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14884197..14888800 /note="source:CACAO_M_S_E84376_F22_scaffold_6 11310 15935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14889790..14891601 /note="source:CACAO_M_S_E84376_F22_scaffold_6 17125 18868" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14892463..14892481) /note="source:CACAO_M_E59623_F33_scaffold_9 2879 2899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14892482..14895436 /note="source:CACAO_M_E48598_F33_scaffold_6 1 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14897390..14899829) /note="source:CACAO_M_E58324_F9_scaffold_9 21588 24069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14900125..14900721) /note="source:CACAO_M_E69760_F9_scaffold_9 9060 9659" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14900263..14907784 /locus_tag="TCM_028455" /note="dbxref CacaoGD:Thecc1EG028455" mRNA join(14900263..14900708,14905095..14905164, 14905282..14906427,14906595..14907784) /locus_tag="TCM_028455" /product="Gag protease polyprotein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032362t1" /inference="similar to AA sequence:Phytozome:POPTR_1126s00200.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.72 coverage" mobile_element complement(14905157..14905436) /note="source:scaffold_9_CACTA_0934 6121 6368" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14905537..14906487 /note="source:CACAO_M_E12297_F14_scaffold_3 9187 10144" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(14905747..14906427,14906595..14907146) /locus_tag="TCM_028455" /note="paralog of Thecc1EG032362t1" /codon_start=1 /product="Gag protease polyprotein, putative" /protein_id="EOY26605.1" /db_xref="Phytozome:POPTR_1126s00200.1" /translation="MPPRRERPLPTRSARRGRGRLRQGQPDLRGEESTVSPFRATLAA EPVEIPPPPTGIPAVSSEVIQAMAAFFTAMAGQAQTSQVPPVVPPVTPSVPLAHDVSI SKKLKEARQLGCVSFVGELDATAAKDWINQVSETLSDMRLEDEMKLIVATRLLEKRAR TWWNSVKSRSTILLTWSDFLREFDSQYYTHFHQKEKKREFLSLKQGNLTIEEYETQFN ELLSYVPDLLANENRRMRAELAKRKNLNMSSSQPLKRSKGSFVSGSAPSVSVTSSRPS FSQMQQRPPRFSGSAVTTSEKSFGGFDRCRECGRFHGGVCWGPLRCFHCGQTGHFRTN CPQLGQATVAALSSSTRTDLQMRDSSGAQPRQGVAIRPDVESNTPVYPPSKPLTRAST KVFTVMEDEARVQPRESE" mobile_element complement(14907259..14907312) /note="source:CACAO_M_E44899_F328_scaffold_6 4225 4278" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14907464..14907863) /note="source:CACAO_M_E22484_F328_scaffold_3 9668 10020" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14907977..14908187) /note="source:scaffold_9_CACTA_0934 6021 6225" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14917723..14918207 /note="source:CACAO_M_E48603_F42_scaffold_6 1 485" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14918946..14920839 /note="source:CACAO_M_E48603_F42_scaffold_6 486 2379" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14924293..14925341 /note="source:CACAO_M_E57195_F15_scaffold_8 1 1049" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14926471..14927379 /note="source:CACAO_M_E57195_F15_scaffold_8 2117 3025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14927338..14927389 /note="source:CACAO_M_E14081_F316_scaffold_3 13580 13633" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14927568..14928339) /note="source:CACAO_M_E69760_F9_scaffold_9 8878 9649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14938813..14938910 /note="source:scaffold_3_CACTA_0382 6619 6713" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14942873..14942990 /note="source:CACAO_M_E49857_F85_scaffold_7 253 356" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14944119..14944404 /note="source:CACAO_M_S_E66657_F76_scaffold_5 759 1043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14944505..14946140 /note="source:CACAO_M_E12963_F15_scaffold_3 279 1911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14946507..14947331) /note="source:CACAO_M_E42911_F15_scaffold_5 1 824" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14947332..14949316 /note="source:CACAO_M_E14763_F42_scaffold_3 1121 3105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14951739..14959076) /note="source:CACAO_M_S_E84840_F51_scaffold_7 1842 9190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14966773..14967237) /note="source:CACAO_M_E35429_F244_scaffold_5 727 1192" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14967628..14967971) /note="source:CACAO_M_E48631_F244_scaffold_6 1 344" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14968184..14978977) /locus_tag="TCM_028459" /note="dbxref CacaoGD:Thecc1EG028459" mRNA complement(join(14968184..14968980,14972117..14972171, 14973869..14975360,14978893..14978977)) /locus_tag="TCM_028459" /product="Gag protease polyprotein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038287t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc4Loc4270t1_G3" CDS complement(join(14968512..14968980,14972117..14972171, 14973869..14975354)) /locus_tag="TCM_028459" /note="paralog of Thecc1EG038287t1" /codon_start=1 /product="Gag protease polyprotein" /protein_id="EOY26606.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GBB7" /translation="MPPRRGRPPLYRSVGRGRGRARLSQPDPVERESAAPTFRAAPAV EPTEIPPPPPPPTATPSVHAMSLEAVQALAAFLNVIMGQAQAGRVPHTVPPAVSPVPP PPPLVPPPVPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKLKEARQLGCTS FVGDLDATAAKDWITQVTETFVDMKLDDDMKLMVATRLLEKKARTWWSSVKSRSITSL TWIDFLQEFNGQYYTYFHQKEKKREFLSLQQGNLTIEEYEARFNELMSYVPDLVKSEQ DQASYFEEGLRNEIRERMTVTGREPHKEVVQMALRAEKLTNENRRKRAEFAKRRNPNV SSSQLPKRGKDTFASESTVSVPVISPRPPLSQLQQRPPRFNRSGMSSTSEKSFGGLNK CEKCGRYHVGECWGIRCFHCDQPGHIRSDCPQLGRATVAAPSPLTHTDMQRRDSFGVH PRQGVTVRSEMGSNTPAQPPLRPLTRSSTRVFAITEDEARVRSGERLIICTTPRDIKS IWVQLRGKDTFASESTVSVPVISPRPPLSQLQQRPPRFNRSGMSSTSEKSFGGLNKCE KCGRYHVGECWGIRCFHCDQPGHIRSDCPQLGRATVAAPSPLTHTDMQRRDSFGVHPR QGVTVRSEMGSNTPAQPPLRPLTRSSTRVFAVTEDEARVRSGESE" mobile_element 14970141..14970907 /note="source:CACAO_M_E69760_F9_scaffold_9 6707 7472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14972094..14972562) /note="source:CACAO_M_E35429_F244_scaffold_5 749 1218" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14972952..14973320) /note="source:CACAO_M_E48631_F244_scaffold_6 1 369" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14973497..14973741) /note="source:CACAO_M_E49857_F85_scaffold_7 19594 19838" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14977714..14977955 /note="source:CACAO_M_S_E144426_F33_scaffold_10 20350 20590" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14978109..14978584) /note="source:CACAO_M_E35429_F244_scaffold_5 1 476" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14978585..14979692) /note="source:CACAO_M_S_E34046_F60_scaffold_4 3510 4590" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14982081..14982822) /note="source:CACAO_M_E44899_F328_scaffold_6 2452 3195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14982816..14985502) /note="source:CACAO_M_E44899_F328_scaffold_6 496 3201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14987054..14988546) /note="source:CACAO_M_E69760_F9_scaffold_9 6707 8194" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14988448..14988707 /note="source:CACAO_M_S_E16530_F33_scaffold_2 2371 2556" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14988547..14988702) /note="source:CACAO_M_E44899_F328_scaffold_6 345 500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14988703..14990228 /note="source:CACAO_M_E14428_F42_scaffold_3 1 1528" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14990229..14992719) /note="source:CACAO_M_S_E13904_F42_scaffold_2 606 3097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14992720..14993162 /note="source:CACAO_M_E48631_F244_scaffold_6 1 443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14993505..14995508 /note="source:CACAO_M_E48631_F244_scaffold_6 444 2447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14995509..14996384 /note="source:CACAO_M_E57059_F42_scaffold_8 2487 3374" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14996385..14997328) /note="source:CACAO_M_E56803_F33_scaffold_8 2054 2967" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14997429..15004151) /note="source:INTACT215_F33_scaffold_4-int 3315 10064" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15004252..15007293) /note="source:INTACT215_F33_scaffold_4-int 229 3269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15007394..15007605 /note="source:CACAO_M_E12297_F14_scaffold_3 8985 9196" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15007606..15009728) /note="source:CACAO_M_E53009_F42_scaffold_8 7528 9649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15014493..15015565 /note="source:CACAO_M_S_E66227_F42_scaffold_5 1528 2606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15015566..15017618) /note="source:CACAO_M_E57924_F323_scaffold_9 1232 3283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15017719..15019076 /note="source:CACAO_M_E52472_F323_scaffold_7 2088 3443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15019077..15019580 /note="source:CACAO_M_E12933_F42_scaffold_3 2581 3082" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15019077..15019120) /note="source:CACAO_M_S_E5285_F300_scaffold_1 13535 13582" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15019581..15019932) /note="source:INTACT184_F164_scaffold_4-int 7989 8335" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(15019847..15064367) /locus_tag="TCM_028461" /note="dbxref CacaoGD:Thecc1EG028461" mRNA complement(join(15019847..15020101,15041958..15042440, 15047438..15047955,15049852..15049970,15051377..15051536, 15051652..15051808,15053117..15053200,15055514..15055727, 15055803..15055911,15056215..15056502,15056647..15056920, 15060707..15060875,15060951..15061821,15062748..15062823, 15063791..15064367)) /locus_tag="TCM_028461" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023080t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.18 coverage" mobile_element 15019929..15022341 /note="source:CACAO_M_S_E83940_F228_scaffold_6 532 2966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15023469..15026435 /note="source:CACAO_M_S_E83940_F228_scaffold_6 1 2967" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15027415..15028530) /note="source:CACAO_M_E53587_F207_scaffold_8 10849 11968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15031156..15033874 /note="source:INTACT759_F323_scaffold_6-int 3655 6381" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15034571..15035234) /note="source:CACAO_M_E12297_F14_scaffold_3 6346 7011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15042957..15043213) /note="source:CACAO_M_E13363_F273_scaffold_3 2739 2996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15043314..15043865 /note="source:CACAO_M_E35811_F12_scaffold_5 15115 15667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15044841..15045223 /note="source:CACAO_M_E35811_F12_scaffold_5 16636 17018" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15045324..15045765 /note="source:CACAO_M_S_E64023_F13_scaffold_5 19062 19503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15045866..15046013 /note="source:CACAO_M_E35811_F12_scaffold_5 17505 17652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15046005..15047916) /note="source:INTACT215_F33_scaffold_4-int 8035 9946" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(15047789..15047955,15049852..15049970, 15051377..15051536,15051652..15051808,15053117..15053200, 15055514..15055727,15055803..15055911,15056215..15056502, 15056647..15056920,15060707..15060875,15060951..15061267)) /locus_tag="TCM_028461" /note="paralog of Thecc1EG023080t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26607.1" /translation="MITETSRRLSRARRECRVVTALQAEKLVIENMRIWIKFAEKRNL GISSSQPVKRGKDSSVSGSTTSISVTSPRPPFSQTQHKPPRFNRSEMTTSGKSFGGSD RCKRSDCPQLRRATATAPSPPARTDVQRRDPSGLPLRQGVAIQSGVESNTSAYPPSRP RLLKINKQDVPKTAFRTRYGHYEFLVMPFGLTNAPVAFMDLMNKVFHPYLYKFVIVFI DDILVYSKNDDEHAAHLLIVLQTLRERQLYAKFSKFGYYRRFVQGFSLIAAPLTRLTR KGVKFEWDDVCENRFQKLKSRLTSAPVLTLPVNGKEFVVYSDASKLGLGCVLMQDEKV IAYSSQQLKKNKMNYRIKLNNGQDGTLLASFVVRPSLLNQIRELQKFDDWLKDRICVL KDDQLRRAILEKAHSSAYALHHRSTKMYRTIKESYWWSGMKQDIAEFVAKCLTCQQIK AEHQNHQVVSPPIKARKLHPRTIRQSASKVRILDINTIFDNGCSQGNRETDSKALRGF GLTFRAISVYRDTAAVVTGSRGVPGRDTQSAAGTYSRLKGSSAEEQKHSNGESIVKEC SNGGDDVGSQALNEKPIPTSFRRVRTNVVNFLILYCVKVVSPPIKARELYLRTSNLSI SKIPTLGFDCSKSENIVIKLVTTRYSPRARDNRRGVSVDTYCSECQPETPQGFTISFS IPL" mobile_element complement(15048383..15051656) /note="source:CACAO_M_E294_F134_scaffold_1 13601 16874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15051658..15053347 /note="source:INTACT215_F33_scaffold_4-int 8036 9725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15053647..15054611) /note="source:CACAO_M_E12297_F14_scaffold_3 6346 7312" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15054613..15057800) /note="source:CACAO_M_E294_F134_scaffold_1 10412 13603" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15057801..15060634 /note="source:CACAO_M_E48648_F15_scaffold_6 1 2834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15060635..15061207 /note="source:CACAO_M_E52459_F134_scaffold_7 6013 6586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15061208..15062541) /note="source:CACAO_M_E36294_F51_scaffold_5 12512 13861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15064217..15066348 /note="source:CACAO_M_E3109_F15_scaffold_1 6541 8673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15066449..15067299 /note="source:CACAO_M_E56637_F15_scaffold_8 1187 2038" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15067400..15067902) /note="source:CACAO_M_E619_F15_scaffold_1 510 1013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15068861..15071818 /note="source:CACAO_M_E86338_F15_scaffold_15 3552 6509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15071919..15072659) /note="source:CACAO_M_E4554_F15_scaffold_2 3595 4335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15073294..15073808) /note="source:INTACT646F_F95_scaffold_5-int 2634 3149" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15074126..15075135 /note="source:CACAO_M_E56637_F15_scaffold_8 553 1564" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15075958..15076271 /note="source:INTACT1580F_F15_scaffold_9-int 2289 2602" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15081282..15083152 /note="source:CACAO_M_E45167_F85_scaffold_6 2648 4509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15094271..15094873 /note="source:CACAO_M_E49857_F85_scaffold_7 20095 20697" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15094974..15095282) /note="source:CACAO_M_E69751_F323_scaffold_9 2710 3018" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15095383..15096250) /note="source:CACAO_M_E589_F323_scaffold_1 2218 3086" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15098387..15099179) /note="source:CACAO_M_E3465_F15_scaffold_1 1 793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15099169..15099399) /note="source:CACAO_M_E56693_F323_scaffold_8 1884 2114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15099180..15099218 /note="source:INTACT189_F49_scaffold_5-int 13636 13666" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15101159..15101433 /note="source:CACAO_M_E57924_F323_scaffold_9 3009 3283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15101434..15103233 /note="source:CACAO_M_E84979_F134_scaffold_10 1138 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15104594..15105284 /note="source:CACAO_M_E52947_F33_scaffold_8 1 692" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15105385..15107612) /note="source:CACAO_M_E4200_F33_scaffold_2 1 2238" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15107561..15111129 /locus_tag="TCM_028465" /note="dbxref CacaoGD:Thecc1EG028465" mRNA join(15107561..15107683,15110658..15111129) /locus_tag="TCM_028465" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025403t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 15110821..15111078 /locus_tag="TCM_028465" /note="paralog of Thecc1EG025403t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26608.1" /translation="MAQSSGQHVGYLRLVAILFAEDDKIFDFLSHIEIVNKTKDTKWI YYKRFNGIPKTKNNIYWFSLWRFMSELEDYDQMSCTVFSDL" mobile_element complement(15112102..15115695) /note="source:CACAO_M_S_E5234_F276_scaffold_1 4068 7701" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15116761..15117240) /note="source:INTACT622_F276_scaffold_7-int 3138 3618" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15117341..15118307) /note="source:INTACT622_F276_scaffold_7-int 2166 3134" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15118408..15120549) /note="source:CACAO_M_S_E32591_F276_scaffold_4 1 2323" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15124853..15129521 /note="source:CACAO_PIF_E119_scaffold_3 6784 11438" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 15129522..15132494 /note="source:CACAO_M_S_E83955_F7_scaffold_6 1 2973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15132495..15133910 /note="source:CACAO_PIF_E119_scaffold_3 11434 12854" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(15133482..15134475) /note="source:CACAO_PIF_E62_scaffold_2 15752 16708" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(15134486..15136887) /note="source:CACAO_PIF_E62_scaffold_2 11754 14131" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 15136883..15137203 /note="source:CACAO_PIF_E119_scaffold_3 7814 8119" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(15137208..15137385) /note="source:CACAO_Mutator_E1018_scaffold_5 467 644" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15137401..15137521 /note="source:CACAO_Mutator_E1018_scaffold_5 503 622" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15137571..15137901) /note="source:CACAO_PIF_E62_scaffold_2 16126 16467" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(15137712..15137942) /note="source:CACAO_Mutator_E1320_scaffold_6 2002 2251" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(15137897..15137977) /note="source:CACAO_PIF_E62_scaffold_2 13862 13942" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(15138144..15143339) /note="source:CACAO_PIF_E62_scaffold_2 7095 12308" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(15148328..15150092) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3006 4761" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15151113..15153027 /note="source:CACAO_M_S_E15173_F4_scaffold_2 5863 7836" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15153025..15153070) /note="source:CACAO_M_S_E85177_F5_scaffold_7 19524 19567" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15153061..15154814) /note="source:CACAO_M_E58324_F9_scaffold_9 21588 23403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15154742..15154829) /note="source:scaffold_2_CACTA_0261 11427 11514" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15154824..15155929 /note="source:INTACT627_F278_scaffold_9-int 4373 5476" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15154986..15161433) /note="source:CACAO_M_S_E99975_F143_scaffold_9 3 6444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15170523..15186719 /note="source:INTACT465_F78_scaffold_6-int 1 16197" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15188707..15189382 /note="source:CACAO_M_E22545_F73_scaffold_3 1 677" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15189483..15191518) /note="source:CACAO_M_E10243_F73_scaffold_2 1 2036" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15192053..15194769 /note="source:CACAO_M_S_E6372_F7_scaffold_2 1 2729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15194770..15197434 /note="source:CACAO_M_S_E83969_F231_scaffold_6 1 2665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15197435..15199789 /note="source:INTACT504_F7_scaffold_1-int 2656 5479" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15199790..15200592 /note="source:INTACT551_F248_scaffold_7-int 14174 14990" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15200238..15204672) /note="source:INTACT777_F7_scaffold_9-int 1 4419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15210060..15211209) /note="source:CACAO_M_E69812_F73_scaffold_9 1581 2724" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15212072..15212478 /note="source:CACAO_M_E35176_F7_scaffold_5 12167 12572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15212747..15213224) /note="source:CACAO_M_S_E1931_F7_scaffold_1 1 480" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15213225..15213258) /note="source:INTACT261_F189_scaffold_2-int 6115 6145" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(15214017..15233472) /locus_tag="TCM_028476" /note="dbxref CacaoGD:Thecc1EG028476" mRNA complement(join(15214017..15214408,15214600..15214715, 15215528..15215699,15216546..15216739,15233045..15233472)) /locus_tag="TCM_028476" /product="Gag-protease-integrase-RT-RNaseH polyprotein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013589001" /inference="similar to AA sequence:Phytozome:Glyma13g21780.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(15214124..15214408,15214600..15214715, 15215528..15215699,15216546..15216653)) /locus_tag="TCM_028476" /codon_start=1 /product="Gag-protease-integrase-RT-RNaseH polyprotein, putative" /protein_id="EOY26609.1" /db_xref="Phytozome:Glyma13g21780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B5U9F7" /translation="MDSYGQKYFISFRDDYSRYMYLYLLHNKNEAFDAFKEPDYNFGV ENDPDTFSQAMSCKEFELWYNTMKDEMNSMASNGALNLVELPNGAKAIGCKHQSNPSM DYWRVAKKVIKHLKGTKDYMLMYRQTDNLESFITGLKIVDSISKSLKMYCDNSTTGFL AKNNKSGSRSKHIDIKYLAITKCVRENKMVIEHVSIELMIVDPLIEGMPPMKFKDHVA RMGLGCIM" mobile_element 15225892..15228498 /note="source:CACAO_M_S_E83972_F335_scaffold_6 1 2607" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15228529..15231606 /locus_tag="TCM_028478" /note="dbxref CacaoGD:Thecc1EG028478" mRNA join(15228529..15228631,15228707..15228884, 15228981..15229245,15230061..15230123,15230670..15231606) /locus_tag="TCM_028478" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(15228571..15228631,15228707..15228884, 15228981..15229245,15230061..15230123,15230670..15230696) /locus_tag="TCM_028478" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26610.1" /translation="MKVELVKSGLLRTNLVRCVLRRPWGVQWSAQVTILKFFLEWNNL IQNGDVSIWRSTFFAVIWTIWLMRNEIVFQGKIQDGSSMAKSGLVFKKDNQCPEWKPL SNGFLKFNVDGAARKDTSRAGIGGVLRDKEQVIRIRFSIAVMVENANMVEVIVIKEVF RIFASSSWNPFQLSPLPSRCSLGSSKRWEVGGGEWGC" gene complement(15233591..15258844) /locus_tag="TCM_028479" /note="dbxref CacaoGD:Thecc1EG028479" mRNA complement(join(15233591..15233885,15234842..15234910, 15234982..15235328,15244319..15245234,15245382..15245517, 15258767..15258844)) /locus_tag="TCM_028479" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009058t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.38 coverage" mobile_element 15237695..15238783 /note="source:CACAO_M_E49195_F17_scaffold_6 16 1115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15238788..15243622 /note="source:CACAO_M_E48667_F42_scaffold_6 1 4835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15243723..15248794 /note="source:CACAO_M_E48667_F42_scaffold_6 4836 9907" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(15244750..15245234,15245382..15245517, 15258767..15258835)) /locus_tag="TCM_028479" /note="paralog of Thecc1EG009058t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26611.1" /translation="MVVRREVNSKYTLGDTLCASHTKIIMSPRRETPPLTRSVGRGRG RFQRRQLGAIEEESSASTIRAAPAVPPAAPSVPSPSPLVPPLVLDVSDSKKLKEARQH SCVSFMGESDATVAKEVVQMALRAEKLANENKSLRAELAKRRNLSVSSSQPPKRGKDS YVSGSSRRYRNCGNYHVGLCRGLARCFRCDQPSHIRRHCPQLGWATVAAPSPPAHTDM QKRDSSRLQSR" mobile_element 15248806..15249542 /note="source:CACAO_M_E49195_F17_scaffold_6 1126 1869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15249543..15252261 /note="source:CACAO_M_E48668_F144_scaffold_6 1 2719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15252262..15256879) /note="source:CACAO_M_E11488_F17_scaffold_2 1290 6045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15256880..15259804 /note="source:CACAO_M_E48669_F143_scaffold_6 1 2925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15259805..15261026 /note="source:CACAO_M_E49195_F17_scaffold_6 224 1437" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15261036..15272020 /note="source:INTACT217_F173_scaffold_6-int 1 10985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15272021..15272100) /note="source:INTACT591_F264_scaffold_1-int 19734 19815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15276864..15277337 /note="source:INTACT148_F15_scaffold_8-int 49 522" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15277068..15277421) /note="source:CACAO_M_E11032_F42_scaffold_2 2344 2698" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15277813..15278465 /note="source:CACAO_M_E69460_F12_scaffold_9 5193 5854" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15281433..15282509 /note="source:CACAO_M_E11415_F328_scaffold_2 18999 20102" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15282857..15330228 /locus_tag="TCM_028484" /note="dbxref CacaoGD:Thecc1EG028484" mRNA join(15282857..15283364,15315605..15315954, 15316122..15316242,15316360..15316448,15316583..15316667, 15316762..15316921,15317142..15317218,15317537..15317590, 15317708..15317798,15317891..15318192,15318473..15318754, 15318838..15319154,15319248..15319408,15319519..15319622, 15319890..15320046,15320122..15320223,15320317..15320438, 15320536..15320868,15320964..15321254,15321347..15321430, 15321541..15321674,15321790..15322017,15322111..15322282, 15322700..15323019,15326177..15326561,15329166..15329251, 15330087..15330228) /locus_tag="TCM_028484" /product="Pleiotropic drug resistance 12 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017187001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028448t1" /inference="similar to AA sequence:Phytozome:GSVIVT01035780001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1024t1" mobile_element complement(15288110..15288946) /note="source:CACAO_M_S_E101224_F9_scaffold_9 603 1445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15288923..15289561) /note="source:CACAO_M_E11662_F12_scaffold_2 432 1075" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15291499..15291548) /note="source:CACAO_M_S_E14383_F144_scaffold_2 1025 1074" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15292190..15293717 /note="source:CACAO_M_S_E90022_F9_scaffold_8 4335 5858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15293712..15297625 /note="source:INTACT85_F9_scaffold_4-int 6443 10392" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15297759..15298898) /note="source:CACAO_M_E58324_F9_scaffold_9 2707 3846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15304447..15307390 /note="source:CACAO_M_E48681_F44_scaffold_6 1 2944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15307645..15307935 /note="source:INTACT33_F7_scaffold_5-int 9522 9803" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15308397..15310472) /note="source:CACAO_M_E58324_F9_scaffold_9 617 2681" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15310466..15311145 /note="source:CACAO_M_E36185_F9_scaffold_5 755 1439" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA join(15315020..15315954,15316122..15316242, 15316360..15316448,15316583..15316667,15316762..15316921, 15317142..15317218,15317537..15317590,15317708..15317798, 15317891..15318192,15318473..15318754,15318838..15319154, 15319248..15319408,15319519..15319622,15319890..15320046, 15320122..15320223,15320317..15320438,15320536..15320868, 15320964..15321254,15321347..15321430,15321541..15321674, 15321790..15322017,15322111..15322282,15322375..>15322475) /locus_tag="TCM_028484" /product="Pleiotropic drug resistance 12 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017187001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028448t1" /inference="similar to AA sequence:ricco:30131.m006867" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1024t2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1024t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3527t2" CDS join(15315626..15315954,15316122..15316242, 15316360..15316448,15316583..15316667,15316762..15316921, 15317142..15317218,15317537..15317590,15317708..15317798, 15317891..15318192,15318473..15318754,15318838..15319154, 15319248..15319408,15319519..15319622,15319890..15320046, 15320122..15320223,15320317..15320438,15320536..15320868, 15320964..15321254,15321347..15321430,15321541..15321674, 15321790..15322017,15322111..15322282,15322700..15322957) /locus_tag="TCM_028484" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG028448t1" /codon_start=1 /product="Pleiotropic drug resistance 12 isoform 1" /protein_id="EOY26612.1" /db_xref="Phytozome:GSVIVT01035780001" /db_xref="TAIR:AT1G15520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HX55" /translation="MEGNDLYQVRSNSLRGNSPSKWRDAGVNVFSRSFREEDDEEALK WAAIERLPTFSRVRKGLLTTSNGETSEVDIPKLGYRERKSLIDRLIKDTEEDNESFLL RLRQRLDRVGIEIPTLEVRFEHLRVEAEAYIGSRALPSFFNFFINKLESILQHLHLLS SRKKTLSILRDVSGIIRPSRMTLLLGPPNSGKTTLLLALAGKLGRDLKFSGRVTYDGH EMNEFVAQRTAAYIGQYDVHIPELTVRETLAFSARCQGVGPRYEMLAELARREKAANI KPDPDIDIFMKAASIEGQETSVIADYIIKVLGLDNCADTLVGDEMFRGISGGQRKRVT TGEMLAGPAKLLLMDEISTGLDSSTTYQIVKSLRQFIHILNGTAFISLLQPAPETYEL FDDIILLSDGQIVYQGPREHVLEFFESMGFKCPARKGVADFLQEVTSRKDQRQYWMEN DTAYTFVTVEEFAEAFQSFHVGKRLKINLATPFDKSLSNPTLLTTKIYGVKKMELLKA CFSKELLLMKRNSFVYIFKLVQLVVMALVGSTLFLRTEMQKKTAVNGVVRMGALFFSV FMIMFNGLAELGLTLFKLPVFFKQRDNLFYPAWAYALPTWILKIPISIIEVGIWVAVT YYAMGLDPNIFRFLKQLLLLLLTSQMASALFRLISALGRDLTFTSTFASFSLLVLFAN CGFVLSRDEVKKWWIWGYWISPMMYTQNAIAINEFLGESWKQVIPTTTESLGLIVLKA RGLFTEAYWYWIGVGALVGFILVFNFFYTLALTYLNPLDESRGIKSEAQSIEDDDRRG GDAQLLAQRSNSELLRSEAESHTIRGRKKGMILPYQQHCITFEEITYAVDMPQEMKAQ GVMEDRLVLLRGISGALRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSIKISGF PKKQETFARISGYCEQNDIHSPNLTVYESLLYSAWLRLTPEVNSETRKMFVEEVMELI ELTPLRQALVGLPGVSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMR TVRNTVDTGRTVVCTIHQPGIDIFEAFDELLLLKQGGQEIYVGPLGNNSCDLIKYFEG IEGVSKIKDGYNPATWMLELSTPAHEMALGVDFADLYKNSELHRRNKALIEQLNMPSP GSKELQFPTQYSQSFFTQVLICLCKQRWSYWRNTSYTAVRFFFTTVIALIFGTMFWNL GSKSARQQDLFNSAGSMYAAILFVGIQNASSIQPVASIERTVFYREKAAGMYSPMAYA FAQEIPMWWRWNYWICPLAWTLYGLVVSQYGDVKDVLDSGETTDEFLKSYFGFRHDFI GVVAVVIVGWTLFFAFLFALLIKLLNFQKR" CDS join(15315626..15315954,15316122..15316242, 15316360..15316448,15316583..15316667,15316762..15316921, 15317142..15317218,15317537..15317590,15317708..15317798, 15317891..15318192,15318473..15318754,15318838..15319154, 15319248..15319408,15319519..15319622,15319890..15320046, 15320122..15320223,15320317..15320438,15320536..15320868, 15320964..15321254,15321347..15321430,15321541..15321674, 15321790..15322017,15322111..15322282,15322375..>15322473) /locus_tag="TCM_028484" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30131.m006867; paralog of Thecc1EG028448t1" /codon_start=1 /product="Pleiotropic drug resistance 12 isoform 3" /protein_id="EOY26614.1" /db_xref="TAIR:AT1G15520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HX55" /translation="MEGNDLYQVRSNSLRGNSPSKWRDAGVNVFSRSFREEDDEEALK WAAIERLPTFSRVRKGLLTTSNGETSEVDIPKLGYRERKSLIDRLIKDTEEDNESFLL RLRQRLDRVGIEIPTLEVRFEHLRVEAEAYIGSRALPSFFNFFINKLESILQHLHLLS SRKKTLSILRDVSGIIRPSRMTLLLGPPNSGKTTLLLALAGKLGRDLKFSGRVTYDGH EMNEFVAQRTAAYIGQYDVHIPELTVRETLAFSARCQGVGPRYEMLAELARREKAANI KPDPDIDIFMKAASIEGQETSVIADYIIKVLGLDNCADTLVGDEMFRGISGGQRKRVT TGEMLAGPAKLLLMDEISTGLDSSTTYQIVKSLRQFIHILNGTAFISLLQPAPETYEL FDDIILLSDGQIVYQGPREHVLEFFESMGFKCPARKGVADFLQEVTSRKDQRQYWMEN DTAYTFVTVEEFAEAFQSFHVGKRLKINLATPFDKSLSNPTLLTTKIYGVKKMELLKA CFSKELLLMKRNSFVYIFKLVQLVVMALVGSTLFLRTEMQKKTAVNGVVRMGALFFSV FMIMFNGLAELGLTLFKLPVFFKQRDNLFYPAWAYALPTWILKIPISIIEVGIWVAVT YYAMGLDPNIFRFLKQLLLLLLTSQMASALFRLISALGRDLTFTSTFASFSLLVLFAN CGFVLSRDEVKKWWIWGYWISPMMYTQNAIAINEFLGESWKQVIPTTTESLGLIVLKA RGLFTEAYWYWIGVGALVGFILVFNFFYTLALTYLNPLDESRGIKSEAQSIEDDDRRG GDAQLLAQRSNSELLRSEAESHTIRGRKKGMILPYQQHCITFEEITYAVDMPQEMKAQ GVMEDRLVLLRGISGALRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSIKISGF PKKQETFARISGYCEQNDIHSPNLTVYESLLYSAWLRLTPEVNSETRKMFVEEVMELI ELTPLRQALVGLPGVSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMR TVRNTVDTGRTVVCTIHQPGIDIFEAFDELLLLKQGGQEIYVGPLGNNSCDLIKYFEG IEGVSKIKDGYNPATWMLELSTPAHEMALGVDFADLYKNSELHRRNKALIEQLNMPSP GSKELQFPTQYSQSFFTQVLICLCKQRWSYWRNTSYTAVRFFFTTVIALIFGTMFWNL GSKSARQQDLFNSAGSMYAAILFVGIQNASSIQPVASIERTVFYREKAAGMYSPMAYA FAQVLVELPYVFVQALTYGIIVYSMMAFEWTAAKFL" mRNA join(15316789..15316921,15317142..15317218, 15317537..15317590,15317708..15317798,15317891..15318194, 15318473..15318754,15318838..15319154,15319248..15319408, 15319519..15319622,15319890..15320046,15320122..15320223, 15320317..15320438,15320536..15320868,15320964..15321254, 15321347..15321430,15321541..15321674,15321790..15322017, 15322111..15322282,15322375..15322629,15322700..15323069) /locus_tag="TCM_028484" /product="Pleiotropic drug resistance 12 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017187001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028448t1" /inference="similar to AA sequence:ricco:30131.m006867" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3527t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3527t2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1024t1" CDS join(15318506..15318754,15318838..15319154, 15319248..15319408,15319519..15319622,15319890..15320046, 15320122..15320223,15320317..15320438,15320536..15320868, 15320964..15321254,15321347..15321430,15321541..15321674, 15321790..15322017,15322111..15322282,15322375..15322629, 15322700..15322957) /locus_tag="TCM_028484" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30131.m006867; paralog of Thecc1EG028448t1" /codon_start=1 /product="Pleiotropic drug resistance 12 isoform 2" /protein_id="EOY26613.1" /db_xref="TAIR:AT1G15520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HX55" /translation="MENDTAYTFVTVEEFAEAFQSFHVGKRLKINLATPFDKSLSNPT LLTTKIYGVKKMELLKACFSKELLLMKRNSFVYIFKLVQLVVMALVGSTLFLRTEMQK KTAVNGVVRMGALFFSVFMIMFNGLAELGLTLFKLPVFFKQRDNLFYPAWAYALPTWI LKIPISIIEVGIWVAVTYYAMGLDPNIFRFLKQLLLLLLTSQMASALFRLISALGRDL TFTSTFASFSLLVLFANCGFVLSRDEVKKWWIWGYWISPMMYTQNAIAINEFLGESWK QVIPTTTESLGLIVLKARGLFTEAYWYWIGVGALVGFILVFNFFYTLALTYLNPLDES RGIKSEAQSIEDDDRRGGDAQLLAQRSNSELLRSEAESHTIRGRKKGMILPYQQHCIT FEEITYAVDMPQEMKAQGVMEDRLVLLRGISGALRPGVLTALMGVSGAGKTTLMDVLA GRKTGGYIEGSIKISGFPKKQETFARISGYCEQNDIHSPNLTVYESLLYSAWLRLTPE VNSETRKMFVEEVMELIELTPLRQALVGLPGVSGLSTEQRKRLTIAVELVSNPSIIFM DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFEAFDELLLLKQGGQEIY VGPLGNNSCDLIKYFEGIEGVSKIKDGYNPATWMLELSTPAHEMALGVDFADLYKNSE LHRRNKALIEQLNMPSPGSKELQFPTQYSQSFFTQVLICLCKQRWSYWRNTSYTAVRF FFTTVIALIFGTMFWNLGSKSARQQDLFNSAGSMYAAILFVGIQNASSIQPVASIERT VFYREKAAGMYSPMAYAFAQVLVELPYVFVQALTYGIIVYSMMAFEWTAAKFLWYIFF MYFTLLYFTFFGMMSVGMTPNYHIASVVSTAFYAVWNLFTGFLVPRMEIPMWWRWNYW ICPLAWTLYGLVVSQYGDVKDVLDSGETTDEFLKSYFGFRHDFIGVVAVVIVGWTLFF AFLFALLIKLLNFQKR" mobile_element 15324488..15327230 /note="source:CACAO_M_E48686_F73_scaffold_6 1 2729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15334615..15336333 /note="source:INTACT1219F_F95_scaffold_6-int 6732 8450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15336194..15336351) /note="source:CACAO_M_E9661_F15_scaffold_2 10188 10344" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15348948..15349299) /note="source:INTACT905F_F31_scaffold_6-int 1620 2071" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15359272..15359806 /note="source:INTACT1221F_F373_scaffold_6-int 7181 7715" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15359907..15360555 /note="source:INTACT1221F_F373_scaffold_6-int 7716 8364" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15361696..15362381 /note="source:INTACT551_F248_scaffold_7-int 11605 12283" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15362369..15364184) /note="source:CACAO_M_E35811_F12_scaffold_5 15825 17652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15364099..15364423 /note="source:INTACT139F_F15_scaffold_2-int 5624 5897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15364926..15365009) /note="source:INTACT472_F79_scaffold_7-int 4853 4936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15365010..15366607 /note="source:INTACT646_F284_scaffold_3-int 1 1627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15366584..15366733 /note="source:CACAO_M_E45017_F15_scaffold_6 7297 7449" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15366851..15367724) /note="source:CACAO_M_E294_F134_scaffold_1 5766 6639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15367825..15368635) /note="source:INTACT1581F_F99_scaffold_9-int 2132 2942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15375369..15375443) /note="source:CACAO_M_E294_F134_scaffold_1 3136 3211" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15375430..15377044 /note="source:INTACT646_F284_scaffold_3-int 1620 3221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15375889..15377047) /note="source:CACAO_M_E35811_F12_scaffold_5 16489 17646" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15377037..15377881) /note="source:CACAO_M_E35811_F12_scaffold_5 16700 17529" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15377881..15378871) /note="source:CACAO_M_E35811_F12_scaffold_5 15825 16829" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15378843..15380000 /note="source:INTACT669_F295_scaffold_3-int 8282 9443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15380002..15382230) /note="source:CACAO_M_E12297_F14_scaffold_3 17033 19281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15385392..15388768 /note="source:CACAO_M_S_E119127_F246_scaffold_9 1 3408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15388769..15394721 /note="source:INTACT469_F79_scaffold_2-int 1 5985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15394722..15405327 /note="source:CACAO_M_E48700_F15_scaffold_6 1 14079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15405176..15405343) /note="source:INTACT901F_F95_scaffold_6-int 8395 8562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15405327..15406689 /note="source:INTACT469_F79_scaffold_2-int 5994 7357" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15406702..15411964 /note="source:CACAO_M_E48701_F73_scaffold_6 1 5263" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15413503..15413807 /note="source:INTACT551_F248_scaffold_7-int 7014 8620" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15413804..15417061) /note="source:INTACT547_F246_scaffold_8-int 3395 6340" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15417210..15420175 /note="source:CACAO_M_E27121_F246_scaffold_4 1 2964" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15420036..15422435 /locus_tag="TCM_028490" /note="dbxref CacaoGD:Thecc1EG028490" mRNA join(15420036..15420107,15421589..15422435) /locus_tag="TCM_028490" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044766t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400054729" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 15421654..15422025 /locus_tag="TCM_028490" /note="paralog of Thecc1EG044766t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26615.1" /db_xref="Phytozome:PGSC0003DMP400054729" /translation="MSIYLLQVLKPPVCVIEKIERLFYSFLWGGSTVNKRIHWTSWHN ITFPKSEGGLDIRSLKDILNTFTAKLWWQFDTCKSLWARYMRLKYCTNHIHHNITPKP HDSTTWKRLIDERVAVGQQIR" gene 15424464..15425252 /locus_tag="TCM_028491" /note="dbxref CacaoGD:Thecc1EG028491" mRNA 15424464..15425252 /locus_tag="TCM_028491" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037988t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 15424628..15425020 /locus_tag="TCM_028491" /note="paralog of Thecc1EG037988t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26616.1" /translation="MPFSNETMTLEDNTTMLKYNNASDEGNEDLFLVGEARFDDHSNE EFDEWHDNSLDDDWFYDSDIPICNNVKGETEHVGGVDVRDVQCDDPIYNNPMASENGI RLLEALLDDSFKEIGNVGISRTWLISGA" mobile_element 15425379..15428149 /note="source:CACAO_M_E48703_F98_scaffold_6 1 2771" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15427471..15430817 /locus_tag="TCM_028492" /note="dbxref CacaoGD:Thecc1EG028492" mRNA join(15427471..15427496,15428805..15429157, 15429304..15429890,15430452..15430817) /locus_tag="TCM_028492" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022540t1" /inference="similar to AA sequence:frave:gene29055" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(15427486..15427496,15428805..15429157, 15429304..15429716) /locus_tag="TCM_028492" /note="dbxref frave:gene29055; paralog of Thecc1EG022540t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26617.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ADM9" /translation="MVVIHMNQLKQIHVEAHSNLLRMDLERWACALSLARQYQFMLSN IEECVNSCLKHARKMPITVLVEFIRFMFQHWFHDQYEEAVKVTTPFSPWVAKQLRKRF NDVHRFVIKSINQMGFKVKAFILCLNIEFIVFFSKCKHEAVEFCPDYYKITFLVEGYM RSIHPAEHPNDWDIPLHVKQIIVLPPPWRGQVRKPRRKRIPSTSEGSRAWKCSQCKRY GHNRQNCPFPFEVPSANPAPSLSQSAPPQVRRPKACSTCR" mobile_element complement(15427995..15428174) /note="source:CACAO_M_E13172_F96_scaffold_3 7196 7372" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15430762..15430873 /note="source:CACAO_M_S_E7818_F60_scaffold_2 20564 20673" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(15432137..15432957) /locus_tag="TCM_028493" /note="dbxref CacaoGD:Thecc1EG028493" mRNA complement(join(15432137..15432376,15432449..15432659, 15432865..15432957)) /locus_tag="TCM_028493" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039105t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS complement(join(15432239..15432376,15432449..15432659, 15432865..15432911)) /locus_tag="TCM_028493" /note="paralog of Thecc1EG039105t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26618.1" /translation="MGKHEKDMLELKASIRHTSSHHDGEHHDDADDGQHDKLGVHIHH DVVGADGENVTHVDDILDDVAARDVTFQSVDVEGDNVPQADVTNAVVDASTRGDGNLA TVQVEEDHVPHVDTIVEAAATEDGHLTSV" mobile_element complement(15437561..15437647) /note="source:scaffold_2_CACTA_0262 881 971" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15438529..15438569) /note="source:CACAO_Mariner_E229_scaffold_9 10643 10699" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 15438570..15439566 /note="source:CACAO_M_E3884_F22_scaffold_1 1 1067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15439561..15439783) /note="source:CACAO_M_E24592_F195_scaffold_4 3658 3879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15439784..15442679 /note="source:CACAO_M_E48708_F230_scaffold_6 1 2896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15442680..15443813) /note="source:CACAO_M_E24592_F195_scaffold_4 2552 3664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15442894..15445048) /note="source:scaffold_2_CACTA_0261 1782 3884" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15445051..15448746) /note="source:CACAO_M_E56674_F14_scaffold_8 8282 11977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15449049..15449741 /note="source:scaffold_8_CACTA_0860 9477 10130" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15450269..15450348 /note="source:scaffold_8_CACTA_0860 10588 10666" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15452069..15452462) /note="source:scaffold_8_CACTA_0860 9474 9874" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15452499..15453228) /note="source:scaffold_8_CACTA_0860 5747 6485" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15454013..15454124) /note="source:CACAO_M_E69460_F12_scaffold_9 1069 1175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15454085..15454166 /note="source:scaffold_8_CACTA_0860 465 537" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15454940..15455025) /note="source:scaffold_8_CACTA_0860 227 306" /mobile_element_type="transposon:TIR/CACTA" gene 15457322..15465266 /locus_tag="TCM_028495" /note="dbxref CacaoGD:Thecc1EG028495" mRNA join(15457322..15457687,15464432..15465266) /locus_tag="TCM_028495" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.54 coverage" mobile_element complement(15460558..15460655) /note="source:scaffold_6_CACTA_0710 5379 5473" /mobile_element_type="transposon:TIR/CACTA" CDS 15464464..15464673 /locus_tag="TCM_028495" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26619.1" /translation="MMHCMHFLNIVRNCKMKKRFPLLALEVTRVMNLQNCDFEIFCNE NGFNHNFSVLRTPQQMKWLKGKIGL" mobile_element 15471970..15477073 /note="source:CACAO_M_E48710_F148_scaffold_6 1 5104" /mobile_element_type="retrotransposon:LTR/Copia" gene 15477622..15487182 /locus_tag="TCM_028498" /note="dbxref CacaoGD:Thecc1EG028498" mRNA join(15477622..15477997,15478228..15478348, 15478447..15478535,15478627..15478711,15478830..15478989, 15479094..15479170,15480911..15480964,15481046..15481136, 15481222..15481523,15481762..15482043,15482126..15482442, 15482531..15482691,15482793..15482899,15482994..15483150, 15483251..15483376,15483533..15483702,15483798..15484130, 15484559..15484849,15484934..15485017,15485186..15485316, 15485489..15485716,15485841..15486012,15486148..15486402, 15486626..15487182) /locus_tag="TCM_028498" /product="Pleiotropic drug resistance 12" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017201001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028072t1" /inference="similar to AA sequence:Phytozome:GSVIVT01035780001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3525t2" CDS join(15477708..15477997,15478228..15478348, 15478447..15478535,15478627..15478711,15478830..15478989, 15479094..15479170,15480911..15480964,15481046..15481136, 15481222..15481523,15481762..15482043,15482126..15482442, 15482531..15482691,15482793..15482899,15482994..15483150, 15483251..15483376,15483533..15483702,15483798..15484130, 15484559..15484849,15484934..15485017,15485186..15485316, 15485489..15485716,15485841..15486012,15486148..15486402, 15486626..15486883) /locus_tag="TCM_028498" /note="paralog of Thecc1EG028072t1" /codon_start=1 /product="Pleiotropic drug resistance 12" /protein_id="EOY26620.1" /db_xref="Phytozome:GSVIVT01035780001" /db_xref="TAIR:AT1G15520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HX55" /translation="MGRENFNELEGNTLENFSTSLHDEDDEEALKWAALERLPTFDRV KKGLLLGSRGRTSEIDIKNLDFHERIKTVERLVKNTEEENEKFLLKLRNRIDRVGIKL PTIEVRFEHLNVDAEAYVGSRGLPTFLSYYTNMVESFLCFIHVLPSRKKQIRILQDVG GIIKPSRMTLLLGPPSSGKTTLLLALAGMLDQDLRSTGRVTYNGYDKREFVPQKSAAY ISQLDLHIPEMTVRETLAFSARCQGVGSQYDMLMELLRREKASNIKPDPDIDIFMKAA ATEGQEMSIIVDYVLKILGLEVCADTLVGDAMLRGISGGQKKRLTTGEMLVGPAKVLL MDEISTGLDSSTTFQVVNAIKRYVNILDGTALISLLQPPPETYDLFDDIILLSDGQIV YQGPREYVLEFFGSMGFKCPERKEVADFLQEVTSRKDQEQYWANKDEPYHYVTAKTFA EAFKSFHIGLKLIVELHTPFDKSKSHRAALTSKKYGARKKELVKACLSRELLLMKRNS FVTKFKLMQISALAFVFMTVFFRTEMHRDSISDGGMFMGSLCFLLYLMLFNGFSEMGM VIAKLPVFYKQRALLFYPPWAYALPSWFLRIPITVIEVAVFVVPIYYVTGYDPNIGRF FRLYLQLLLMKVMASAFFRFLGAVGRTAIVGNTFGALALMTILIFGGYMLSRDNVKKW WIWLYWLSPAMYGQNALAVNEFLGNSWKHPVYPNSTKPIGVAVLEARGMFPYSYWYWL GIGATIGFTLLCNCLFTIALTYLKPIEKRESFISEETLKSRWVDNIGATIELPHQGRR SVGGTESAERGIGMMRRVSSAITLTTTGTNSEVHQSQPKRRGMILPFELHSITFDEIR YFIDMPQEMKEQGVNEDRLELLKGVSGTFRPGVLTALMGVSGAGKTTLMDVLAGRKTG GYIEGTITVSGYPKKQETFARIFGYCEQNDIHSPYVTVYESLVYSAWLRLPLEVDSET RKIFVEEVMELVELSSLREALVGLPGVNGLSLEQRKRLTVAVELMSNPSIIFMDEPTS GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELYLMTRGGQEIYVGPLG QHSCHLITYFEGIEGVGKIKDGYNPATWALEVTTSVQAALGINFNDVYRNSELYRRNK ALIKELSTPSPGSKDLYFVTKYSQPFFIQFKACLWKQHCSYWRNTSYTAFRLFFTAFA ALIFGSMFWDLGSKWKRQQDLFNAMGAMYTSVIFIGVNNTFSVMPIIAVERTVFYRER AARMYSAMAYTLAQAMIELPYLFVQAVVFGVIIYAMIGFQWNAAKFFWYMFIMYFNLS GYTFYGMMVVALTPNLQVAYIVSTAVYGLWSLFAGFLIPRPRIPVWWRWYYWACPLAW TLYGLTTSQFGDVKDTLDTNETVQSFIRSYYGFRHDFLGVVAAVMVAFPAFYALTFAF SIKVLNFQKR" mobile_element 15486983..15490080 /note="source:CACAO_M_S_E84024_F42_scaffold_6 1 3098" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15493329..15496306 /note="source:CACAO_M_E48714_F245_scaffold_6 1 2978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15500527..15503423 /note="source:CACAO_M_S_E145473_F83_scaffold_10 2 2891" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15503737..15504087) /note="source:INTACT594_F265_scaffold_8-int 1351 1697" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15504279..15507380 /note="source:CACAO_M_E48718_F306_scaffold_6 1 3102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15510080..15510797 /note="source:INTACT695_F301_scaffold_5-int 1930 2636" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15510794..15512401 /note="source:INTACT695_F301_scaffold_5-int 2876 4460" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15513630..15516491) /note="source:INTACT594_F265_scaffold_8-int 2977 5855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15516491..15518439) /note="source:INTACT33_F7_scaffold_5-int 6576 8543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15516750..15519292 /note="source:CACAO_M_E13958_F7_scaffold_3 394 2928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15521709..15522384) /note="source:INTACT695_F301_scaffold_5-int 4535 5208" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15523070..15524458) /note="source:INTACT695_F301_scaffold_5-int 2208 3511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15524455..15524893 /note="source:INTACT280_F60_scaffold_5-int 13870 14307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15524960..15525023) /note="source:CACAO_M_S_E89272_F5_scaffold_8 6724 6786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15525266..15525861 /note="source:CACAO_M_E13091_F44_scaffold_3 1 597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15527186..15529541) /note="source:CACAO_M_E22219_F44_scaffold_3 1 2359" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15532709..15533586) /note="source:CACAO_M_E56710_F44_scaffold_8 7729 8545" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15534270..15535901 /note="source:CACAO_M_E13674_F73_scaffold_3 1 1627" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(15534479..15549312) /locus_tag="TCM_028499" /note="dbxref CacaoGD:Thecc1EG028499" mRNA complement(join(15534479..15534500,15545714..15546047, 15546180..15546301,15549174..15549312)) /locus_tag="TCM_028499" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003518t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element complement(15536005..15537078) /note="source:CACAO_M_E34123_F73_scaffold_4 1 1075" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15537810..15539415 /note="source:INTACT409F_F47_scaffold_4-int 1 1627" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15539473..15539654) /note="source:INTACT649F_F368_scaffold_5-int 182 362" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15539652..15540309 /note="source:CACAO_M_E5899_F5_scaffold_2 19652 20321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15540442..15542001 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6012 7597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15542002..15542529 /note="source:scaffold_2_CACTA_0262 8522 9054" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15543121..15543181 /note="source:CACAO_M_E10603_F306_scaffold_2 8877 8937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15543174..15544015 /note="source:CACAO_M_S_E65068_F306_scaffold_5 7400 8245" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(15545719..15546047,15546180..15546301, 15549174..15549205)) /locus_tag="TCM_028499" /note="paralog of Thecc1EG003518t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26621.1" /translation="MQANFYIMEQRFGSAPIAHSISRSDGSLDALHSTNEGSLDSTAR SQWHPDLQAVRNFLLERFEEWHKKKMKEAIAKGDICPRKVSAILDFPPSCGRGATPLS KEECIRIQQAWIKAKMEKSQEVEEDLDEDLSMCSEQGDDDLKDTFVELCLTLSMGNAV " mobile_element 15547300..15547613 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6012 6330" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15547605..15548487 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6696 7597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15548522..15548708 /note="source:INTACT409F_F47_scaffold_4-int 21728 21917" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15549570..15549610) /note="source:INTACT146F_F14_scaffold_2-int 5685 5725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15549610..15549926) /note="source:CACAO_M_S_E7818_F60_scaffold_2 20528 20844" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15550820..15551337) /note="source:scaffold_2_CACTA_0262 6260 6810" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15551338..15554457 /note="source:CACAO_M_S_E84051_F51_scaffold_6 1 3120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15554458..15554530) /note="source:INTACT146F_F14_scaffold_2-int 4352 4422" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15555224..15556644) /note="source:CACAO_M_E24592_F195_scaffold_4 2502 3873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15555646..15556865) /note="source:scaffold_2_CACTA_0261 2626 3886" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15557757..15557821 /note="source:INTACT146F_F14_scaffold_2-int 14344 14406" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15557766..15557824) /note="source:CACAO_M_E5899_F5_scaffold_2 19649 19707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15559815..15559903) /note="source:INTACT19F_F94_scaffold_1-int 14118 14201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15560034..15562991 /note="source:CACAO_M_S_E370_F7_scaffold_1 1 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15563085..15564625) /note="source:CACAO_M_E59164_F88_scaffold_9 9162 10830" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15564626..15567669) /note="source:CACAO_M_E58223_F201_scaffold_9 1 3045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15567670..15568782) /note="source:CACAO_M_E59164_F88_scaffold_9 8134 9170" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15572286..15574913 /note="source:INTACT1625F_F66_scaffold_10-int 1 2635" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15574892..15575235 /note="source:CACAO_M_S_E89272_F5_scaffold_8 18206 18546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15575587..15575635 /note="source:INTACT551_F248_scaffold_7-int 10175 10223" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15575657..15575821) /note="source:CACAO_M_E35176_F7_scaffold_5 4534 4717" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15581761..15584389) /note="source:INTACT146F_F14_scaffold_2-int 3174 5823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15589127..15589847 /note="source:CACAO_M_E24592_F195_scaffold_4 19420 20133" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15589850..15591357 /note="source:CACAO_M_E24592_F195_scaffold_4 1 1101" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15592414..15600373 /locus_tag="TCM_028502" /note="dbxref CacaoGD:Thecc1EG028502" mRNA join(15592414..15592603,15592759..15592866, 15598726..15598806,15600254..15600373) /locus_tag="TCM_028502" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS join(15592549..15592603,15592759..15592866, 15598726..15598806,15600254..15600351) /locus_tag="TCM_028502" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26622.1" /translation="MLDIVVILGIDWLPPYYAILDTLVDVGNVTNVTIVVDYVDVFSK KLLRLPLDYIGSIITVIPTCITQAGGIIPISIRLIIKGAFSSFFFDNIETRQKHGVKA KYVHTYFKSNN" mobile_element complement(15597791..15597863) /note="source:INTACT280_F60_scaffold_5-int 13878 13949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15600044..15604433) /note="source:INTACT543_F86_scaffold_5-int 5014 9404" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15604534..15606849 /note="source:CACAO_M_E58480_F86_scaffold_9 4389 6692" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15606848..15608604 /note="source:CACAO_M_E22854_F86_scaffold_3 1155 2912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15608866..15608919) /note="source:CACAO_M_S_E89272_F5_scaffold_8 9899 9952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15611103..15612617 /note="source:CACAO_M_S_E89272_F5_scaffold_8 6733 8221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15613205..15615443 /note="source:CACAO_M_E10603_F306_scaffold_2 4817 7061" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15615434..15615603 /note="source:CACAO_M_E4447_F306_scaffold_2 2898 3068" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15617695..15618659) /note="source:INTACT79_F137_scaffold_5-int 1274 2240" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15618674..15620291 /note="source:CACAO_M_E84893_F51_scaffold_10 1495 3102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15624628..15625745) /note="source:CACAO_M_S_E99975_F143_scaffold_9 5451 6574" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15625746..15628490 /note="source:CACAO_M_E48750_F369_scaffold_6 1 2745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15628491..15633409) /note="source:INTACT667_F51_scaffold_5-int 658 5589" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15630406..15631122 /locus_tag="TCM_028506" /note="dbxref CacaoGD:Thecc1EG028506" mRNA 15630406..15631122 /locus_tag="TCM_028506" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043946t1" /inference="similar to AA sequence:frave:gene21083" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage" CDS 15630551..15630949 /locus_tag="TCM_028506" /note="dbxref frave:gene21083; paralog of Thecc1EG043946t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26623.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BRX9" /translation="MKNMIRFTKRGKLNLRYIGPFRIIEKFGPVAYRLELAPELDRIH NVFHISMLKKYVPDPSHILEAPPIELQEDLKFEVQFVRILDRKDRVLRKKNIPMVKVL WKNARMKEMMWEVEHQMRNQYPYLFSEFGK" mobile_element 15633410..15636400 /note="source:CACAO_M_E22175_F54_scaffold_3 1 2924" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15636401..15637057) /note="source:CACAO_M_S_E101381_F51_scaffold_9 3 676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15637059..15640218) /note="source:INTACT280_F60_scaffold_5-int 1 3183" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15640180..15642998 /locus_tag="TCM_028508" /note="dbxref CacaoGD:Thecc1EG028508" mRNA join(15640180..15640396,15640705..15640841, 15642659..15642998) /locus_tag="TCM_028508" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(15640219..15640396,15640705..15640841, 15642659..15642922) /locus_tag="TCM_028508" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26624.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AGW4" /translation="MSTMIASRFIRYGCQGFLVVVLDIQMDVGYMVDVPILGKYVDEF LRELIRLPLKREITFWYHQLRIRGGDIPKTTFHMRYGHYEFLVMSFGLTTALIALMDI MNKVGERRLLGLKIVQETTDKIQFIRERMLMSQSHQKSYADHRCQELEFKVSDHVFLR VSPTKGFLRFGKKGKLSLRYIEPFEIFVKVAW" mobile_element 15647609..15649938 /note="source:CACAO_M_S_E15214_F378_scaffold_2 702 2399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15649925..15658963) /note="source:INTACT78_F136_scaffold_6-int 36 6703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15656614..15659596 /note="source:INTACT146F_F14_scaffold_2-int 10488 13375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15664107..15664243 /note="source:CACAO_M_E72867_F9_scaffold_10 5008 5157" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15664831..15664982 /note="source:INTACT287_F193_scaffold_2-int 9114 9263" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15664983..15667673 /note="source:CACAO_M_S_E84078_F231_scaffold_6 1 2691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15667613..15667690) /note="source:CACAO_M_E4631_F369_scaffold_2 7829 7906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15667671..15677489 /note="source:INTACT611_F22_scaffold_5-int 140 9973" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15680545..15684528 /locus_tag="TCM_028512" /note="dbxref CacaoGD:Thecc1EG028512" mRNA join(15680545..15680588,15682775..15683233, 15683341..15683665,15684117..15684528) /locus_tag="TCM_028512" /product="2-oxoglutarate-dependent dioxygenase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s17620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028523t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17620.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3446t1" mobile_element 15681775..15681834 /note="source:CACAO_M_S_E66657_F76_scaffold_5 8047 8106" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(15682860..15683233,15683341..15683665, 15684117..15684359) /locus_tag="TCM_028512" /note="paralog of Thecc1EG028523t1" /codon_start=1 /product="2-oxoglutarate-dependent dioxygenase" /protein_id="EOY26625.1" /db_xref="Phytozome:POPTR_0001s17620.1" /db_xref="TAIR:AT1G52790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GL06" /translation="MGSESSPNVPFLDFSDEDLKPGTDTWLLACKKVRQALEEYGCFI LEYNKFPLELHNQVFAVLEELFDLPTETKMKNRYEKPLNGYVGQIPKLPLHESMGIDN ANTLEGTRFFTNLMWPQGNDRFCEYIYKYAKVAAELDQMVTRMIFESYGLDKYSDAYI DTTTYLLRLLKNRAPRENEPNLGFITHTDKSFTTILHQNQVNALEVETRDGTWIDVDF SSPSSFVVIAGDALMAWSNDRVLSPSHRVVMRGNMDRYSLGLFAFNSGTIQVPEELVD EEHPLKYKAFEHLGLLRFYRTDKGYKSKCPIKAYCGV" mobile_element 15688965..15690263 /note="source:scaffold_9_CACTA_0937 13636 14933" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15690264..15693354 /note="source:CACAO_M_E48758_F15_scaffold_6 1 3091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15693356..15695038 /note="source:scaffold_9_CACTA_0937 14930 16639" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15698097..15699937 /note="source:CACAO_M_S_E64023_F13_scaffold_5 5813 7649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15699293..15700184) /note="source:CACAO_M_E22186_F143_scaffold_3 1031 1911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15702220..15702267 /note="source:INTACT901F_F95_scaffold_6-int 11837 11886" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15702260..15703407 /note="source:CACAO_M_E33870_F15_scaffold_4 1641 2807" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15703508..15703795) /note="source:CACAO_M_S_E101707_F15_scaffold_9 13287 13574" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15706514..15706901) /note="source:CACAO_M_S_E50960_F369_scaffold_4 1009 1393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15708567..15708624) /note="source:CACAO_M_E43590_F7_scaffold_5 5158 5218" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15708635..15712435 /locus_tag="TCM_028515" /note="dbxref CacaoGD:Thecc1EG028515" mRNA join(15708635..15708872,15708952..15708983, 15711241..15712435) /locus_tag="TCM_028515" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039579t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage" CDS join(15708691..15708872,15708952..15708983, 15711241..15711539) /locus_tag="TCM_028515" /note="paralog of Thecc1EG039579t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26626.1" /translation="MPQVNLLIEDEDDDMQRDENEEDEMEGDENEDDDEEDDELEDDV FETLSDDSDNNEEHEFENFENMVPWKARTMVKGKHSKPRPRSTNASGSMSSPTNAIEF TDLSIHQQIQQEFNDVPFETLSLLGASAEQVENETPTHDSCSSPSIDLGASVDDTSSR SRGRGPSVGL" mobile_element 15712067..15712383 /note="source:INTACT39F_F22_scaffold_1-int 3822 4136" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15712485..15722801 /locus_tag="TCM_028516" /note="dbxref CacaoGD:Thecc1EG028516" mRNA join(15712485..15712546,15717508..15718054, 15720937..15721633,15721786..15721897,15722031..15722801) /locus_tag="TCM_028516" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008295t1" /note="quality class is medium, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.44 coverage" mobile_element 15715604..15715942 /note="source:CACAO_M_E5899_F5_scaffold_2 8983 9320" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15715942..15716085) /note="source:scaffold_3_CACTA_0382 1215 1351" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15717790..15717944 /note="source:CACAO_M_E14312_F12_scaffold_3 11051 11205" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15718017..15718126 /note="source:CACAO_M_E14312_F12_scaffold_3 11193 11302" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15718334..15718407 /note="source:CACAO_M_S_E50960_F369_scaffold_4 12304 12377" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15718495..15718830 /note="source:INTACT39F_F22_scaffold_1-int 3828 4136" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(15721508..15721633,15721786..15721897, 15722031..15722392) /locus_tag="TCM_028516" /note="paralog of Thecc1EG008295t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26627.1" /translation="MGYRRMARQIEKSKAKSFTTKEGSILKHTGGSVPFVVHAKKMII EMKRDVSFLEVFNRTHKHLGGHGDFIDNKSKSTSLQFDPNAWTEAIEGIEITRTVVYR FGTRVPTTALLTRTHNNVATFESTCGPMPSNTTSPVIALEEKVENLSKNLGKIRDELR GEICEEIKNAMAESMSEFMARMESMIMTNALSKQGNAGP" mobile_element 15723393..15724121 /note="source:CACAO_M_E52834_F33_scaffold_8 1 729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15731426..15733052) /note="source:CACAO_M_E48598_F33_scaffold_6 1 1629" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15733053..15733091 /note="source:scaffold_8_CACTA_0859 15405 15442" /mobile_element_type="transposon:TIR/CACTA" gene complement(15733623..15734371) /locus_tag="TCM_028517" /note="dbxref CacaoGD:Thecc1EG028517" mRNA complement(join(15733623..15734187,15734287..15734371)) /locus_tag="TCM_028517" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010731t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(15733840..15734175) /locus_tag="TCM_028517" /note="paralog of Thecc1EG010731t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26628.1" /translation="MKAQSQFPITDNEQNDRETVNLNKRVYQKDEVSFNSQFDHSSID LDNNTILLTSEYEEDNMVVDVEHNEEDDKAEGVKDEIEEESDEQDENDTDDDEYEKKE NELPYSDDE" mobile_element complement(15737276..15737461) /note="source:CACAO_M_E5899_F5_scaffold_2 22351 22516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15737462..15739346) /note="source:scaffold_1_CACTA_0028 13830 15733" /mobile_element_type="transposon:TIR/CACTA" gene 15738586..15741553 /locus_tag="TCM_028518" /note="dbxref CacaoGD:Thecc1EG028518" mRNA join(15738586..15738618,15739236..15739359, 15739480..15739562,15741335..15741553) /locus_tag="TCM_028518" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" CDS join(15739539..15739562,15741335..15741538) /locus_tag="TCM_028518" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26629.1" /translation="MSQMCHDSCGANYQSRQQITKIPLVGKNSYFCSKNSHYFSRLII HHFLTNSPRIKIKLILTQYMVNSAINGCGRK" mobile_element 15739551..15742490 /note="source:CACAO_M_E48763_F33_scaffold_6 1 2940" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15742589..15743336 /note="source:CACAO_M_E58002_F33_scaffold_9 2221 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15745807..15747352) /note="source:CACAO_M_E52278_F17_scaffold_7 1 1531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15755025..15757990 /note="source:CACAO_M_E48766_F15_scaffold_6 1 2966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15758107..15758505) /note="source:CACAO_M_E58324_F9_scaffold_9 9825 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15758506..15761316 /note="source:CACAO_M_E48769_F15_scaffold_6 1 2811" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15761317..15762043 /note="source:CACAO_M_E58148_F12_scaffold_9 8777 9509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15762044..15765040) /note="source:CACAO_M_S_E85842_F7_scaffold_7 1 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15765041..15766584) /note="source:INTACT296_F13_scaffold_9-int 11778 13343" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15779049..15779087) /note="source:CACAO_M_S_E83691_F15_scaffold_6 8444 8483" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15780516..15780639) /note="source:CACAO_M_E58819_F24_scaffold_9 16165 16283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15780532..15781005 /note="source:CACAO_M_E36038_F90_scaffold_5 2054 2564" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15780638..15781008) /note="source:CACAO_M_E12463_F12_scaffold_3 5320 5692" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15780991..15781683) /note="source:INTACT1580F_F15_scaffold_9-int 2294 2985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15781670..15783744 /note="source:CACAO_M_E50697_F15_scaffold_7 899 2973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15783745..15785818 /note="source:INTACT296_F13_scaffold_9-int 12312 14445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15794802..15795033 /note="source:CACAO_M_E13038_F22_scaffold_3 10962 11201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15795070..15795748 /note="source:CACAO_M_S_E64832_F14_scaffold_5 1948 2651" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15795747..15796394 /note="source:CACAO_M_E3248_F5_scaffold_1 17282 17927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15797365..15797683) /note="source:INTACT88_F12_scaffold_4-int 12704 12999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15802153..15802709 /note="source:scaffold_6_CACTA_0710 141 699" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15802747..15806025 /note="source:scaffold_6_CACTA_0710 1018 4289" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15806367..15823819 /note="source:scaffold_6_CACTA_0710 1 17175" /mobile_element_type="transposon:TIR/CACTA" gene 15823305..15832823 /locus_tag="TCM_028523" /note="dbxref CacaoGD:Thecc1EG028523" mRNA join(15823305..15823725,15823818..15824139, 15824303..15824618,15832186..15832279,15832574..15832823) /locus_tag="TCM_028523" /product="2-oxoglutarate-dependent dioxygenase, putative" /inference="alignment:exonerate-protein:2:frave:gene06010" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028512t1" /inference="similar to AA sequence:frave:gene06010" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS join(15823352..15823725,15823818..15824139, 15824303..15824545) /locus_tag="TCM_028523" /note="dbxref frave:gene06010; paralog of Thecc1EG028512t1" /codon_start=1 /product="2-oxoglutarate-dependent dioxygenase, putative" /protein_id="EOY26630.1" /db_xref="TAIR:AT1G52800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GL06" /translation="MGLQSQFKLPVIDFSEGNLNPGTSTWVSACNDVRQALEEQGCFE ARFDKVPLQLHDTVFATAAELFDLPTELKMRNTSNKPYFDYFGQYRSLPLYESLAMDN PTTHSGTQSFTNLMWPAGNDRFRESAQSFSELVAELDRTVMRMLFESYGVGNYYDYYI KSTNYLLRFYKYRKPEMNESDTGLPPHTDRTLLSIIHQGRISGLQVKLKDGQWVGVQP SPTSFAVMAGDALMAWSNDRIPPCYHQVTMKEKETRYSIGMFSFISGIIHILEELVDE THPLKYKSFDHFQFLHFDRSDEGKKSKCSIKAFCGV" mobile_element complement(15833145..15833597) /note="source:scaffold_8_CACTA_0859 17070 17516" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15833606..15833762) /note="source:scaffold_8_CACTA_0859 16514 16674" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15834480..15834820) /note="source:scaffold_8_CACTA_0859 15426 15772" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15835341..15836458) /note="source:CACAO_M_S_E370_F7_scaffold_1 1846 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15836318..15836483 /note="source:CACAO_M_E22484_F328_scaffold_3 7903 8065" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15836459..15839079 /note="source:INTACT711_F307_scaffold_9-int 2078 4694" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15839073..15840834) /note="source:CACAO_M_S_E549_F7_scaffold_1 97 1869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15841764..15841860 /note="source:INTACT167_F5_scaffold_2-int 3832 3921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15843750..15843994 /note="source:scaffold_2_CACTA_0262 7413 7660" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15845443..15846808 /note="source:INTACT167_F5_scaffold_2-int 4212 5580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15846809..15849916 /note="source:CACAO_M_E48792_F15_scaffold_6 1 3108" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15848884..15856046 /locus_tag="TCM_028524" /note="dbxref CacaoGD:Thecc1EG028524" mRNA join(15848884..15849046,15853040..15853420, 15853926..15854247,15855663..15856046) /locus_tag="TCM_028524" /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017174001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028547t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17640.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" mobile_element 15849918..15850052 /note="source:INTACT167_F5_scaffold_2-int 5577 5708" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(15853047..15853420,15853926..15854247, 15855663..15855917) /locus_tag="TCM_028524" /note="paralog of Thecc1EG028547t1" /codon_start=1 /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein" /protein_id="EOY26631.1" /db_xref="Phytozome:POPTR_0001s17640.1" /db_xref="TAIR:AT1G52820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZTA3" /translation="MGSETPLKLPVIDFTKPDLKPGTTEWDLVKGQVQQALQEYGCFE ALFNRIPLDVRETIFGALEELFDLPLETKICNVSKKPYHGYVGQYPQAPLYESLGIDD ANIIEKVEAQTRALWPEGNKSFSNIIQSFSKQLAELDQTIRRMILESYDLDKYMDEHL DSTKYLLRLMKYKGPKTTETKLGLQSHTDKNIVTILYQNEVEGLEVQTKDGKWFDVKP SKGSFIVMIGESLHAWLNGRLHAPYHRVMMSGDMARYSIGLFSIPKGGYMIKAPDELV DEAHPLLFKPFDHVQFLGFYYTEAGQKAESALKAYCGVQN" mobile_element complement(15857260..15857421) /note="source:INTACT501_F232_scaffold_3-int 4637 4799" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15857413..15858530) /note="source:INTACT501_F232_scaffold_3-int 3581 4697" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15858531..15859772 /note="source:INTACT688_F14_scaffold_11-int 1 906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15859774..15862571) /note="source:INTACT501_F232_scaffold_3-int 783 3584" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15862572..15868574 /note="source:INTACT296_F13_scaffold_9-int 1 5983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15863300..15868568) /note="source:CACAO_M_S_E5162_F13_scaffold_1 7100 12238" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15868569..15874732 /note="source:CACAO_M_E52812_F7_scaffold_8 1 6196" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15874733..15877006 /note="source:scaffold_9_CACTA_0931 15827 18130" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15875013..15877267 /note="source:CACAO_M_E84179_F14_scaffold_10 7284 9502" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15877264..15878168) /note="source:CACAO_M_E33213_F12_scaffold_4 1848 2753" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15878169..15878783 /note="source:INTACT296_F13_scaffold_9-int 6204 6822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15878423..15879170) /note="source:CACAO_M_E49857_F85_scaffold_7 20295 21048" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15879170..15880288) /note="source:CACAO_M_E33787_F13_scaffold_4 1193 4810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15880289..15881020) /note="source:CACAO_M_E69551_F193_scaffold_9 4700 5430" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15881021..15883835 /note="source:CACAO_M_E22565_F15_scaffold_3 1 2785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15883836..15885075) /note="source:INTACT126_F14_scaffold_3-int 3149 4418" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15885071..15885161) /note="source:INTACT563_F255_scaffold_10-int 16753 16844" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15885158..15885207) /note="source:INTACT563_F255_scaffold_10-int 16631 16680" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15885205..15886698) /note="source:CACAO_M_S_E5046_F335_scaffold_1 15151 16671" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15886702..15887612) /note="source:CACAO_M_S_E5046_F335_scaffold_1 3195 4137" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15887613..15890588) /note="source:INTACT504_F7_scaffold_1-int 6988 9971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15891152..15892529) /note="source:CACAO_M_E33282_F13_scaffold_4 7748 9078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15892534..15901607 /note="source:CACAO_M_S_E101856_F12_scaffold_9 3 9083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15901608..15904098 /note="source:CACAO_M_E52239_F256_scaffold_7 19813 24069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15904099..15904132) /note="source:CACAO_M_E33933_F9_scaffold_4 6472 6505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15904141..15904351) /note="source:CACAO_M_E3248_F5_scaffold_1 17358 17586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15905082..15905608) /note="source:INTACT563_F255_scaffold_10-int 43 582" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15905154..15905795) /note="source:CACAO_M_E65323_F12_scaffold_9 7737 8395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15905796..15906701) /note="source:INTACT447_F13_scaffold_6-int 1 908" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15912193..15913121) /note="source:CACAO_M_E43672_F60_scaffold_5 781 1709" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15913106..15913199) /note="source:CACAO_M_E43672_F60_scaffold_5 18161 18254" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15913200..15924164 /note="source:CACAO_M_S_E84144_F44_scaffold_6 1 10965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15924055..15924176) /note="source:CACAO_M_S_E31737_F15_scaffold_3 7772 7891" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15925772..15926862) /note="source:CACAO_M_E43672_F60_scaffold_5 14087 15178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15926857..15929490) /note="source:INTACT85F_F12_scaffold_2-int 8780 11465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15929491..15929984) /note="source:CACAO_M_E43672_F60_scaffold_5 13597 14095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15932983..15933781) /note="source:CACAO_M_E14347_F12_scaffold_3 13294 14103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15933785..15937435 /note="source:CACAO_M_E13038_F22_scaffold_3 10683 14385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15937436..15940833) /note="source:INTACT223_F175_scaffold_5-int 2015 5409" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15940802..15940885) /note="source:scaffold_2_CACTA_0261 6849 6923" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15943038..15943135 /note="source:CACAO_M_E70891_F369_scaffold_10 12332 12423" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15943973..15944085) /note="source:CACAO_M_S_E14330_F13_scaffold_2 14678 14795" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15945480..15946508) /note="source:INTACT223_F175_scaffold_5-int 1 1035" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15947490..15947576) /note="source:INTACT135F_F90_scaffold_2-int 16984 17076" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15948475..15948569 /note="source:CACAO_M_E3884_F22_scaffold_1 13086 13180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15948766..15948886) /note="source:CACAO_M_E48538_F49_scaffold_6 12005 12124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15952196..15953359) /note="source:INTACT8_F106_scaffold_3-int 7432 8601" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15953357..15955843) /note="source:INTACT8_F106_scaffold_3-int 4281 6768" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15955837..15956498) /note="source:CACAO_M_E42343_F106_scaffold_5 1477 2145" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15957340..15957459 /note="source:INTACT224_F176_scaffold_8-int 11612 11729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15960415..15963407 /note="source:CACAO_M_S_E84156_F7_scaffold_6 1 2993" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15970016..15970638) /note="source:scaffold_6_CACTA_0702 4692 5334" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15970644..15972019) /note="source:INTACT41F_F338_scaffold_1-int 1094 2439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15972019..15974473 /note="source:CACAO_M_S_E19828_F19_scaffold_3 7238 8952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15974654..15975396 /note="source:INTACT424_F211_scaffold_12-int 16783 17520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15975397..15978311 /note="source:INTACT597_F267_scaffold_2-int 1 2951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15978311..15979328) /note="source:CACAO_M_S_E84376_F22_scaffold_6 5118 6162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15978440..15979322 /note="source:CACAO_M_E42395_F3_scaffold_5 15059 16013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15979342..15980475) /note="source:CACAO_M_S_E84376_F22_scaffold_6 3565 4713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15980446..15980561) /note="source:INTACT424_F211_scaffold_12-int 6105 6192" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15980558..15983316 /note="source:INTACT597_F267_scaffold_2-int 2984 5702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15983315..15986004 /note="source:INTACT597_F267_scaffold_2-int 5871 8561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15986105..15987649 /note="source:INTACT506_F233_scaffold_3-int 1280 2816" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15987037..15996495 /note="source:scaffold_6_CACTA_0711 1 11404" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15993729..15998396 /note="source:INTACT597_F267_scaffold_2-int 8971 13656" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15996404..15997755) /note="source:scaffold_9_CACTA_0927 6696 8039" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15997756..15999556) /note="source:INTACT329_F199_scaffold_2-int 6423 8289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15998564..16000679 /note="source:scaffold_6_CACTA_0711 4449 6596" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16000326..16000720 /note="source:CACAO_M_S_E100312_F82_scaffold_9 2958 3361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16000837..16001293 /note="source:INTACT336_F12_scaffold_2-int 9024 9468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16001561..16001978) /note="source:scaffold_2_CACTA_0262 4806 5213" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16002088..16003563 /note="source:CACAO_M_E48837_F17_scaffold_6 1 1476" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16003564..16004214) /note="source:scaffold_2_CACTA_0262 3926 4555" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16005950..16006185) /note="source:scaffold_8_CACTA_0860 5265 5500" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16006186..16007260 /note="source:CACAO_M_E48839_F12_scaffold_6 1 1075" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16007923..16008100) /note="source:scaffold_8_CACTA_0860 3490 3682" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16008103..16010817 /note="source:CACAO_M_E27121_F246_scaffold_4 1 2735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16010818..16011082) /note="source:INTACT458_F219_scaffold_7-int 2879 3121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16011083..16011204) /note="source:CACAO_on_E205_scaffold_7 4789 5186" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(16011444..16023944) /note="source:INTACT1391F_F387_scaffold_8-int 1446 13255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16023954..16025268) /note="source:CACAO_M_E58562_F246_scaffold_9 1559 2871" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16025267..16025891) /note="source:CACAO_M_S_E88540_F369_scaffold_7 1 627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16025892..16027442 /note="source:CACAO_M_E27121_F246_scaffold_4 1423 2964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16027320..16027456) /note="source:INTACT212_F171_scaffold_10-int 10610 10749" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16027510..16029349 /note="source:CACAO_M_E48452_F5_scaffold_6 7177 9016" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16029535..16031077 /note="source:CACAO_M_E4181_F369_scaffold_2 1 1524" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16031194..16032099 /note="source:CACAO_M_S_E88540_F369_scaffold_7 1776 2682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16032100..16032896) /note="source:INTACT409F_F47_scaffold_4-int 16256 17031" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16032914..16033475) /note="source:INTACT409F_F47_scaffold_4-int 15781 16340" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16033652..16033906) /note="source:scaffold_8_CACTA_0860 3189 3430" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16033966..16034757) /note="source:scaffold_8_CACTA_0860 2409 3194" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16036679..16038596) /note="source:scaffold_9_CACTA_0927 14123 16041" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16038596..16041290) /note="source:scaffold_5_CACTA_0591 5431 9828" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16041289..16044730) /note="source:scaffold_9_CACTA_0927 10631 14127" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16044719..16045705) /note="source:INTACT329_F199_scaffold_2-int 1033 3218" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16045706..16046848) /note="source:scaffold_9_CACTA_0927 5850 7000" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16046735..16046886) /note="source:INTACT563_F255_scaffold_10-int 2304 2415" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16046887..16049813 /note="source:CACAO_M_E48859_F83_scaffold_6 1 2927" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16046907..16046937) /note="source:INTACT329_F199_scaffold_2-int 960 1032" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16049806..16049863) /note="source:scaffold_9_CACTA_0927 15173 15230" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16049812..16049876) /note="source:CACAO_M_E65323_F12_scaffold_9 9714 9778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16053070..16053329 /note="source:scaffold_2_CACTA_0262 6547 6813" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16054301..16054669) /note="source:CACAO_M_E23144_F272_scaffold_4 8143 8512" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16054599..16054677) /note="source:INTACT293_F14_scaffold_5-int 8659 8743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16055284..16058292 /note="source:CACAO_M_E42586_F54_scaffold_5 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16058772..16059453 /note="source:scaffold_2_CACTA_0262 3895 4602" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16059423..16059870 /note="source:scaffold_2_CACTA_0262 4727 5145" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16061104..16065012) /note="source:CACAO_M_E3248_F5_scaffold_1 21386 25035" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16064983..16065113 /note="source:INTACT120_F22_scaffold_3-int 7007 7140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16065012..16067663) /note="source:CACAO_M_S_E119160_F14_scaffold_9 10813 13348" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16067662..16070315 /note="source:CACAO_M_E33933_F9_scaffold_4 9587 12255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16070312..16071919) /note="source:CACAO_M_E23991_F4_scaffold_4 8300 9876" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16071165..16073987) /note="source:CACAO_M_E11662_F12_scaffold_2 4780 7734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16073199..16075524 /note="source:INTACT37_F117_scaffold_2-int 1723 4042" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16075530..16076609) /note="source:CACAO_M_E11662_F12_scaffold_2 5747 6830" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16076612..16078543 /note="source:CACAO_M_E33114_F73_scaffold_4 1 1928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16078644..16079126) /note="source:CACAO_M_E14079_F73_scaffold_3 1 483" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16079121..16080096 /note="source:INTACT39F_F22_scaffold_1-int 6461 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16079127..16079293) /note="source:INTACT551_F248_scaffold_7-int 19788 19945" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16080095..16081950) /note="source:CACAO_M_E516_F5_scaffold_1 701 3074" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16082347..16082437 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3194 3284" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16082348..16082452) /note="source:CACAO_M_E14347_F12_scaffold_3 8748 8850" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16082423..16083781) /note="source:CACAO_M_E3248_F5_scaffold_1 1 1360" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16089107..16091750 /note="source:INTACT85F_F12_scaffold_2-int 8779 11466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16100367..16103306 /note="source:CACAO_M_E48877_F134_scaffold_6 1 2940" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16100795..16118718 /locus_tag="TCM_028547" /note="dbxref CacaoGD:Thecc1EG028547" mRNA join(16100795..16100842,16115246..16115674, 16116069..16116393,16116865..16117113,16118484..16118718) /locus_tag="TCM_028547" /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017174001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028524t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17640.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" mobile_element complement(16103234..16103314) /note="source:CACAO_M_E12297_F14_scaffold_3 13999 14078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16103316..16103612) /note="source:INTACT187_F9_scaffold_2-int 664 954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16107290..16107370) /note="source:INTACT215F_F14_scaffold_3-int 13075 13155" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16107350..16108341 /note="source:CACAO_M_E3248_F5_scaffold_1 1816 2765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16107363..16108343 /note="source:scaffold_6_CACTA_0702 8390 9347" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16108612..16109182) /note="source:CACAO_M_E1841_F5_scaffold_1 9066 9648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16110483..16110611 /note="source:CACAO_on_S_E46_scaffold_2 1309 1426" /mobile_element_type="transposon:TIR/Mutator" gene complement(16111584..16113764) /locus_tag="TCM_028549" /note="dbxref CacaoGD:Thecc1EG028549" mRNA complement(join(16111584..16112177,16112276..16112352, 16112438..16112673,16113211..16113285,16113534..16113764)) /locus_tag="TCM_028549" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete" CDS complement(join(16112046..16112177,16112276..16112352, 16112438..16112673,16113211..16113285,16113534..16113610)) /locus_tag="TCM_028549" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26633.1" /translation="MEVKNHVLLNKWILRYEDEKTTCGERNKCGRIVEFGYWVDERWV WDIPLRRNKVVFTGKEWNVGHCLELAKIRVAFWANVRWPNEYLLMIDVYIQPFEYSGP KQEKRGRKRITWDLQRMGEMKLNVDGTSTIDSNLAKRMAIKEALLIFIASIWKIERLK ASLPSLEFRKIKKEAKQRAYGLAKNGAQQQMDILRTFE" CDS join(16115289..16115674,16116069..16116393, 16116865..16117113) /locus_tag="TCM_028547" /note="paralog of Thecc1EG028524t1" /codon_start=1 /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, putative" /protein_id="EOY26632.1" /db_xref="Phytozome:POPTR_0001s17640.1" /db_xref="TAIR:AT1G52820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RQA6" /translation="MGEEISCETPLGLPIIDFSNKDLKQGTPEWDSVKIQVRKALQEF GCFEALVDEVPPELREAVFGALKELFDLPLETKMLNVSEKPYHGYLGVHPERSPLYES FGIEDPNIENVEGLSNILWPEGNLAFSKPIHYLAEQVLGLERMVRRMILESLSLEKYM EEHMDSNYYLLRLMKYKGPETTEAKLGLYGHTDKNIMTILYQNNDVHALQVRAKDGEW IHVKPSPRSFIVMIGDPLKAWLNGHMHSPFHRVMMKGNETRFSTGLFSIPKAGYTIKA PEELVDEQHPLLFKPFTYDEFLGFLYTEAGQTAECALTDYCGV" gene 16119153..16120064 /locus_tag="TCM_028550" /note="dbxref CacaoGD:Thecc1EG028550" mRNA join(16119153..16119522,16119690..16120064) /locus_tag="TCM_028550" /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028524t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17640.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage" CDS join(16119209..16119522,16119690..16119822) /locus_tag="TCM_028550" /note="paralog of Thecc1EG028524t1" /codon_start=1 /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, putative" /protein_id="EOY26634.1" /db_xref="Phytozome:POPTR_0001s17640.1" /db_xref="TAIR:AT1G52820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZTA3" /translation="MGSETPLQLPVINFSKQDLKPGSQEWDLLKSQVRQALEEYGCFE ALFDKASLELRSAVFEGLEELFDLPLQAKMLNVSDKPILHHILMHLYMKALGLRIQTS LKIISIQSIVEQVSELEQMVRRMILESFGLEKYMDEHMNSTKYLLT" mobile_element complement(16123496..16123813) /note="source:CACAO_M_S_E15974_F3_scaffold_2 1364 1681" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16123816..16125588 /note="source:CACAO_M_E13798_F15_scaffold_3 1 1774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16125689..16126854) /note="source:CACAO_M_E42485_F15_scaffold_5 1 1168" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16126855..16130434 /note="source:CACAO_M_E42395_F3_scaffold_5 317 3900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16130436..16132321 /note="source:CACAO_M_E12058_F3_scaffold_2 4207 6107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16132323..16133521) /note="source:INTACT319_F3_scaffold_1-int 802 2018" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16133598..16133797 /note="source:INTACT135F_F90_scaffold_2-int 12974 13165" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16133993..16134173 /note="source:INTACT180_F13_scaffold_3-int 3166 3348" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16135011..16138012) /note="source:CACAO_M_E1841_F5_scaffold_1 19381 20282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16138482..16139342 /note="source:CACAO_M_E42395_F3_scaffold_5 894 1775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16141272..16144258 /note="source:CACAO_M_E4498_F7_scaffold_2 1 2986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16144304..16160423 /note="source:INTACT19_F111_scaffold_6-int 1 16120" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16159733..16164184 /locus_tag="TCM_028555" /note="dbxref CacaoGD:Thecc1EG028555" mRNA join(16159733..16159791,16163905..16164184) /locus_tag="TCM_028555" /product="Uncharacterized protein" /note="quality class is strong, express is none, homology is ortholog strong, intron is none, protein is complete" gene complement(16162796..16165220) /locus_tag="TCM_028556" /note="dbxref CacaoGD:Thecc1EG028556" mRNA complement(join(16162796..16163377,16165011..16165220)) /locus_tag="TCM_028556" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS complement(join(16162903..16163377,16165011..16165021)) /locus_tag="TCM_028556" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26636.1" /translation="MFLRIEKKLFMYCINDKELIKKTFVRFRERSELMRTIDSADRRI VDAISIMESVLRSSNTALCQSQLEISMGSRSISHASKKNERSYKESSAGVKPSVKKDG QLIMVERCGTSRCPIDKDGDGDKLEEMWYNVLIPIEEMEWAYKSAVGMLRNGFMHSEV R" CDS 16163947..16164123 /locus_tag="TCM_028555" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26635.1" /translation="MMRGDKTRYSFGLFSNPKGGYIIKAPRELVDEEHPLLFKRHDFD EFLLFFHSDIARKT" mobile_element complement(16167275..16167350) /note="source:scaffold_9_CACTA_0929 4227 4303" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16169379..16172113) /note="source:INTACT189_F49_scaffold_5-int 3150 5888" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16172340..16182479 /note="source:CACAO_M_E22186_F143_scaffold_3 1 15676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16184411..16185520 /note="source:CACAO_M_E58324_F9_scaffold_9 334 1448" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16187126..16190866) /note="source:CACAO_M_E23991_F4_scaffold_4 6132 9874" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16191530..16191731) /note="source:CACAO_M_E11098_F15_scaffold_2 7487 7687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16192683..16193924) /note="source:CACAO_M_E58324_F9_scaffold_9 1 1255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16194799..16194815 /note="source:scaffold_4_CACTA_0493 6641 6653" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16194816..16196396 /note="source:CACAO_M_E70372_F15_scaffold_10 1 1581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16196397..16199351 /note="source:CACAO_M_E48904_F33_scaffold_6 1 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16199283..16199366) /note="source:CACAO_M_E69460_F12_scaffold_9 4954 5037" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16199352..16200564) /note="source:CACAO_M_E85138_F15_scaffold_10 1 1224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16201494..16201702 /note="source:CACAO_M_E52278_F17_scaffold_7 1 224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16201718..16207951 /note="source:CACAO_M_S_E84244_F33_scaffold_6 1 6234" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16208052..16215893 /note="source:CACAO_M_S_E84244_F33_scaffold_6 6235 14076" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16215894..16216592 /note="source:CACAO_M_E52278_F17_scaffold_7 226 925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16216595..16217202 /note="source:INTACT189_F49_scaffold_5-int 17863 18572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16218779..16219081 /note="source:INTACT189_F49_scaffold_5-int 1995 2330" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16219814..16220289 /note="source:scaffold_4_CACTA_0493 3889 4440" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16221643..16222118) /note="source:scaffold_4_CACTA_0493 4074 4567" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16222762..16224199) /note="source:CACAO_M_S_E14932_F233_scaffold_2 8799 10262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16224654..16225082) /note="source:CACAO_M_S_E64440_F7_scaffold_5 8709 9134" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16225263..16228613 /note="source:INTACT1223F_F374_scaffold_6-int 7059 10466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16228619..16229340) /note="source:CACAO_M_S_E7818_F60_scaffold_2 19271 19968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16229882..16230008) /note="source:CACAO_M_E65323_F12_scaffold_9 9027 9153" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16229997..16230956) /note="source:CACAO_M_E3248_F5_scaffold_1 1829 2765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16231030..16233761 /note="source:INTACT1625F_F66_scaffold_10-int 2412 5138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16234155..16234896) /note="source:scaffold_8_CACTA_0860 11165 11885" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16235069..16235144) /note="source:scaffold_8_CACTA_0860 11084 11156" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16235270..16235401) /note="source:scaffold_8_CACTA_0860 10871 11011" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16235632..16236225) /note="source:scaffold_8_CACTA_0860 9993 10597" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16236666..16237683) /note="source:scaffold_8_CACTA_0860 5501 6502" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16237684..16238079) /note="source:INTACT1373F_F385_scaffold_8-int 17884 18280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16237792..16240803 /note="source:CACAO_M_E12221_F121_scaffold_3 5229 8364" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16240367..16240944) /note="source:INTACT711_F307_scaffold_9-int 1001 1567" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16241139..16242001) /note="source:INTACT1421F_F389_scaffold_9-int 10195 11046" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16242189..16242330) /note="source:INTACT193_F12_scaffold_1-int 6837 6979" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16244203..16250759 /note="source:CACAO_M_S_E89200_F13_scaffold_8 1 6446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16250760..16258159) /note="source:CACAO_M_E57660_F369_scaffold_9 3086 10510" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16260347..16263384 /note="source:CACAO_M_S_E89200_F13_scaffold_8 6540 9583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16263385..16275081 /note="source:CACAO_M_S_E84261_F4_scaffold_6 1 11697" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16275082..16275710 /note="source:CACAO_M_S_E89200_F13_scaffold_8 494 1122" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16276047..16278438) /note="source:INTACT1421F_F389_scaffold_9-int 7541 9919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16276680..16278466 /note="source:CACAO_M_S_E85957_F12_scaffold_7 12210 13969" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16281320..16282735 /locus_tag="TCM_028563" /note="dbxref CacaoGD:Thecc1EG028563" mRNA join(16281320..16281364,16281515..16281691, 16281777..16281912,16282331..16282735) /locus_tag="TCM_028563" /product="Patellin 1, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003484t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s14530.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15906t1" CDS join(16281360..16281364,16281515..16281691, 16281777..16281912,16282331..16282585) /locus_tag="TCM_028563" /note="paralog of Thecc1EG003484t1" /codon_start=1 /product="Patellin 1, putative" /protein_id="EOY26637.1" /db_xref="Phytozome:POPTR_0004s14530.1" /db_xref="TAIR:AT1G72150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N5A9" /translation="MDFLFLFSPEEAPSLFSLAAGLSSSRRSLLHSSFIFSFRLSSSP SPLSAGSSAKSAETLFRYIAAEQVPVKYGGLSKDGEFANTDAVTEITVKPSVKHTIEF PVTETCLLTWQVRVVGWDVSYGAEFIPSAEDSYTVIIRKARKVASTEEPVVCNNFKIG EPGKVILTSDNPTSKKKKLLYRLKTKPTSD" gene 16284520..16286392 /locus_tag="TCM_028564" /note="dbxref CacaoGD:Thecc1EG028564" mRNA join(16284520..16284979,16285135..16285456, 16285721..16286392) /locus_tag="TCM_028564" /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s17580.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028524t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17640.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc3654t1" CDS join(16284594..16284979,16285135..16285456, 16285721..16285972) /locus_tag="TCM_028564" /note="paralog of Thecc1EG028524t1" /codon_start=1 /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, putative" /protein_id="EOY26638.1" /db_xref="Phytozome:POPTR_0001s17640.1" /db_xref="TAIR:AT1G52820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GL03" /translation="MTKSAEMSSETPVRLPVIDSSKQDLKPGSADWELVKVQVRQALQ EYGCFEALFDKVLELGKPLIGALEELFDLPLQTKTRYVSEKVFRGYYGPKAPLHESMV IDEANVAENVEQRLTNILWPQGNSSFSETLLSFSSLASGLEKTIRRMILESFGLEKYM DKHMESTNYILRVMKYEGPHTSEPTIGARAHSDQNMVTLLHQNEVNGLEIQTKDGEWI NVKPSPASFIVMIGESLSVWLNGRLPSPYHRVMITGNKARYSSGLFATTKGGYKVKVP EELVDEENPLLFKPFDYEEFLEFYSTEAARGALGSGLKAYCSV" mobile_element 16287379..16292031 /note="source:INTACT114_F38_scaffold_10-int 1 4641" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16295888..16298832 /note="source:CACAO_M_E48929_F44_scaffold_6 1 2945" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16302108..16303421 /note="source:CACAO_M_E1841_F5_scaffold_1 9630 10867" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16303422..16306181 /note="source:CACAO_M_E48930_F15_scaffold_6 1 2760" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16306595..16307404 /note="source:CACAO_M_E1841_F5_scaffold_1 14354 15170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16307764..16308322 /note="source:scaffold_4_CACTA_0489 3232 3735" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16308312..16309111 /note="source:CACAO_M_E11098_F15_scaffold_2 14696 15498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16308316..16309020) /note="source:CACAO_M_E4676_F9_scaffold_2 12390 13088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16309229..16309641 /note="source:INTACT280_F60_scaffold_5-int 13873 14307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16309348..16309788 /note="source:scaffold_2_CACTA_0260 27 464" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16309782..16310199 /note="source:scaffold_4_CACTA_0489 3723 4141" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16310830..16313796 /note="source:CACAO_M_E36071_F7_scaffold_5 1 2982" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16314470..16325816 /note="source:INTACT1223F_F374_scaffold_6-int 1 11347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16325817..16326873 /note="source:scaffold_4_CACTA_0489 7581 8655" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16326780..16326883) /note="source:CACAO_M_E86361_F7_scaffold_15 6195 6306" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16330744..16331357 /note="source:scaffold_2_CACTA_0260 3898 4514" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16332529..16332706 /note="source:CACAO_M_S_E85957_F12_scaffold_7 14645 14817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16332554..16332728) /note="source:CACAO_M_S_E118676_F14_scaffold_9 12642 12815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16334391..16334455) /note="source:CACAO_M_E56674_F14_scaffold_8 10978 11043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16339094..16340516) /note="source:CACAO_M_E13363_F273_scaffold_3 9658 11081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16340517..16347228 /note="source:CACAO_M_E48940_F279_scaffold_6 1 8135" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16347239..16347304) /note="source:CACAO_M_S_E5285_F300_scaffold_1 1569 1631" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16348011..16348077 /note="source:CACAO_M_E34804_F369_scaffold_5 950 1018" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16348079..16348254) /note="source:scaffold_2_CACTA_0260 34 209" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16349789..16351380) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17960 19531" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16352833..16355451 /note="source:CACAO_M_E48944_F369_scaffold_6 1 2619" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16358433..16359214) /locus_tag="TCM_028568" /note="dbxref CacaoGD:Thecc1EG028568" mRNA complement(16358433..16359214) /locus_tag="TCM_028568" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.55 coverage" CDS complement(16358657..16358872) /locus_tag="TCM_028568" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26639.1" /translation="MKEEKEVEKKEAKEKKKILALKIILLEEELEELLSVDDEEQAMM ARQFRKLTGQKGRKFKRKNYKKEQGPS" mobile_element complement(16360181..16360302) /note="source:CACAO_M_S_E65716_F44_scaffold_5 9688 9808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16362266..16362584 /note="source:scaffold_2_CACTA_0260 29 345" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16363399..16364267) /note="source:CACAO_M_S_E65716_F44_scaffold_5 8923 9824" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16364224..16364281 /note="source:CACAO_M_E86361_F7_scaffold_15 7276 7332" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16364706..16364821 /note="source:CACAO_M_E33213_F12_scaffold_4 9736 9858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16366691..16367567) /note="source:CACAO_M_S_E15173_F4_scaffold_2 953 1862" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16370506..16380381) /note="source:CACAO_M_S_E109876_F7_scaffold_9 1 9929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16380603..16380679 /note="source:scaffold_4_CACTA_0494 512 588" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16382380..16385690 /note="source:CACAO_M_E48953_F82_scaffold_6 1 3311" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16388110..16389078) /note="source:CACAO_M_E86305_F7_scaffold_15 7957 8926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16389113..16390064 /note="source:CACAO_M_E33213_F12_scaffold_4 9748 10703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16391628..16392792 /note="source:CACAO_M_E14839_F7_scaffold_3 44 1207" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16392748..16394196) /note="source:INTACT504_F7_scaffold_1-int 6986 8431" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16395938..16396010) /note="source:CACAO_M_S_E15173_F4_scaffold_2 889 957" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16397370..16398363) /note="source:CACAO_M_E43348_F5_scaffold_5 19669 20651" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16398431..16398537) /note="source:CACAO_M_E43348_F5_scaffold_5 19315 19436" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16400322..16404335 /note="source:CACAO_M_E27112_F245_scaffold_4 1 3991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16404336..16407266) /note="source:CACAO_M_S_E119600_F33_scaffold_9 1 2923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16407267..16410268) /note="source:CACAO_on_S_E58_scaffold_2 5191 8183" /mobile_element_type="transposon:TIR/Mutator" mobile_element 16409953..16412831 /note="source:CACAO_M_E8481_F245_scaffold_2 6528 9430" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16412844..16416164 /note="source:CACAO_M_E48965_F85_scaffold_6 1 3321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16416165..16419462) /note="source:CACAO_M_E59738_F82_scaffold_9 6916 10213" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16419461..16420505 /note="source:CACAO_M_S_E20068_F245_scaffold_3 1917 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16422851..16423101 /note="source:CACAO_M_S_E5285_F300_scaffold_1 5447 5697" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16423092..16425198) /note="source:INTACT222_F33_scaffold_7-int 3731 5791" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16425662..16425794) /note="source:CACAO_M_E49195_F17_scaffold_6 3442 3570" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16425889..16427262) /note="source:CACAO_M_E58324_F9_scaffold_9 1437 2785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16427230..16427519 /note="source:INTACT1575F_F97_scaffold_9-int 7801 8089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16427259..16429830) /note="source:CACAO_M_E12963_F15_scaffold_3 415 2946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16429932..16430344) /note="source:CACAO_M_E49872_F15_scaffold_7 1 413" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16430345..16431792) /note="source:CACAO_M_E58324_F9_scaffold_9 1 1442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16431793..16432603 /note="source:CACAO_M_S_E5285_F300_scaffold_1 5693 6504" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(16432622..16434516) /locus_tag="TCM_028575" /note="dbxref CacaoGD:Thecc1EG028575" mRNA complement(join(16432622..16432748,16434058..16434181, 16434409..16434516)) /locus_tag="TCM_028575" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019482t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(16432740..16432748,16434058..16434181, 16434409..16434482)) /locus_tag="TCM_028575" /note="paralog of Thecc1EG019482t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26640.1" /translation="MIVAAIYVDYVWKYNMDLSGNYLGRKCKDKVRVLWWRAGVNIER LASENNQRHLRSNSDVISHYRKEL" mobile_element 16433261..16434058 /note="source:INTACT296_F13_scaffold_9-int 12716 13431" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16434860..16435015 /note="source:INTACT280_F60_scaffold_5-int 10502 10658" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16435419..16435785 /note="source:CACAO_M_E57113_F85_scaffold_8 9843 10199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16435788..16435920 /note="source:CACAO_M_S_E5285_F300_scaffold_1 6499 6632" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16435918..16436370 /note="source:CACAO_M_S_E5285_F300_scaffold_1 16804 17265" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16436349..16437366 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17960 18978" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(16440944..16443038) /locus_tag="TCM_028576" /note="dbxref CacaoGD:Thecc1EG028576" mRNA complement(join(16440944..16441960,16442379..16443038)) /locus_tag="TCM_028576" /product="Gibberellin 3-oxidase 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05610.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037958t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s05610.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03812t00001" CDS complement(join(16441324..16441960,16442379..16442857)) /locus_tag="TCM_028576" /note="paralog of Thecc1EG037958t1" /codon_start=1 /product="Gibberellin 3-oxidase 1, putative" /protein_id="EOY26641.1" /db_xref="Phytozome:POPTR_0003s05610.1" /db_xref="TAIR:AT1G15550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39103" /translation="MPSRLSDAFRAHPVHLQQLKHPDFTSLQELPDLYAWNQRDDYPC GDAFAAESVPIIDLDDPNALQGIGHACKTWGVFQVINHGIPPSLLDMVECTGRTLFSL PVHQKLKAARSPDGVSGYGFARISSFFSKLMWSEGFTIVGSPDEHFRQLWPQDYSNYC DVIKEYKEEMKKLAGRLMWLVLGSLGIRAKQDMKWAGPKGDFREASAALQLNFYPACP DPERAMGLAAHTDSTLLTILYQNNTSGLQVLKEGAEWVTVPPVPGGLVINVGDLMHIL SNGSYPSVLHRAMVNRSRHRLSIAYLYGPPSSVKISPHPKLVGPSHPPLYRPVTWNEY LDTKAKHFNKALSSVRVCVPLNGLVDVNEHNNSVTVG" mobile_element 16445470..16445537 /note="source:INTACT415F_F22_scaffold_4-int 2197 2260" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16446802..16446879 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3185 3263" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16446810..16446888) /note="source:INTACT296_F13_scaffold_9-int 13163 13243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16449627..16450925 /note="source:CACAO_M_S_E16721_F36_scaffold_2 17787 19077" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16451925..16456391 /note="source:INTACT117_F146_scaffold_2-int 1785 6177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16454393..16465628 /note="source:CACAO_M_S_E16721_F36_scaffold_2 7726 19007" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16465629..16468273 /note="source:CACAO_M_E48973_F345_scaffold_6 1 2628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16468274..16468522 /note="source:CACAO_M_E12044_F76_scaffold_2 5568 5790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16468474..16468602) /note="source:CACAO_M_E57346_F74_scaffold_9 2607 2745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16469326..16469842 /note="source:INTACT257_F186_scaffold_6-int 18922 19455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16477059..16479827 /note="source:CACAO_M_E4753_F17_scaffold_2 12085 14848" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16480419..16481721 /note="source:CACAO_M_E5627_F4_scaffold_2 18801 20170" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16483488..16483541 /note="source:CACAO_M_E5378_F96_scaffold_2 689 742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16483704..16483718 /note="source:INTACT265_F12_scaffold_7-int 7162 7175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16483719..16487465) /note="source:CACAO_M_S_E5046_F335_scaffold_1 14122 20864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16487466..16489368 /note="source:INTACT554_F250_scaffold_7-int 1 2089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16489826..16490436 /note="source:CACAO_M_E58877_F5_scaffold_9 20347 20735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16490435..16495350 /note="source:INTACT595_F266_scaffold_7-int 3714 8654" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16494140..16496981) /note="source:CACAO_M_S_E5046_F335_scaffold_1 1 2903" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16504417..16506682) /locus_tag="TCM_028581" /note="dbxref CacaoGD:Thecc1EG028581" mRNA complement(join(16504417..16504767,16505120..16505251, 16505403..16505525,16505626..16505712,16506319..16506462, 16506552..16506682)) /locus_tag="TCM_028581" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s17700.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17700.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g14527t00001" CDS complement(join(16504694..16504767,16505120..16505251, 16505403..16505525,16505626..16505712,16506319..16506462, 16506552..16506669)) /locus_tag="TCM_028581" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26642.1" /db_xref="Phytozome:POPTR_0001s17700.1" /translation="MDGWNLTLFSFVLLLLSFCTSTVTATSSHVTLNQANPIQDTACL FIKCGQGTCKASNSLLGFDCECLPGWRKIQIGPFTFPSCLIPNCTVDFECGNGSPPPP PPPASLPPPANQTSHCDLVWCGDGNCVTNGTGHICQCNQGSQNFLNSSGLACFKPCYF GVDCQGLGLDLPLGLTQPPPPPPLPPPPPPPPSSSLSSDGYACQCAWQLFVASMVALA AAFLSGF" gene complement(16507023..16509746) /locus_tag="TCM_046832" /note="dbxref CacaoGD:Thecc1EG046832" mRNA complement(join(16507023..16507532,16507944..16508176, 16508313..16508408,16508491..16508727,16509345..16509746)) /locus_tag="TCM_046832" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028585t1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3723t1" CDS complement(join(16507349..16507532,16507944..16508176, 16508313..16508408,16508491..16508727,16509345..16509473)) /locus_tag="TCM_046832" /note="paralog of Thecc1EG028585t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative" /protein_id="EOY26643.1" /db_xref="TAIR:AT1G80350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SEX2" /translation="MVGNSLAGLQDHLKLAREYAPEGLYDTSIIFFDGAIAHCSDQQK ALSEEIEVVKQLDVERRSFKEGSTGRRPSSPPIHAMSSFVFQPLDEYWTSLGAPMDNP DVWRPPSQDTTSRRPVRAGEAGGSSRTNTGVRASATGKKDTGSGKSSKEDSANGDAED GKSKRLQYEGPDPDLAAMLERDVLETTPGVQWDDVAGLTEAKRLLEKAFVLPLWMPEY FQVLAAVAAELSLKWPLMWILIKWLVEQRDSGDDLTNVCRDASLNGMRRKIAGKTWDE IRNMSQDEISKDPVAM" gene complement(16509348..16527259) /locus_tag="TCM_046833" /note="dbxref CacaoGD:Thecc1EG046833" mRNA complement(join(16509348..16511213,16511943..16512051, 16512617..16512675,16512882..16512988,16513434..16513590, 16514337..16514396,16515572..16515700,16516411..16516458, 16516624..16516711,16527234..16527259)) /locus_tag="TCM_046833" /product="Pyridoxal phosphate (PLP)-dependent transferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29841.m002756" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038310t1" /inference="similar to AA sequence:ricco:29841.m002756" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc136t24_C2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc136t24_C2" mRNA complement(join(16510424..16511213,16511943..16512051, 16512617..16512675,16512882..16512988,16513434..16513590, 16514337..16514396,16515572..16515700,16516411..16516458, 16516624..16516820)) /locus_tag="TCM_046833" /product="Pyridoxal phosphate (PLP)-dependent transferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29841.m002756" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038310t1" /inference="similar to AA sequence:ricco:29841.m002756" /note="transcript variant 2; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3881t2; alternateUTRof:Thecc1EG046833t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc136t24_C2" mRNA complement(join(16510544..16511213,16511943..16512051, 16512617..16512675,16512882..16512988,16513434..16513590, 16514337..16514396,16515572..16515700,16516411..16516458, 16516624..16516711,16517161..16517373)) /locus_tag="TCM_046833" /product="Pyridoxal phosphate (PLP)-dependent transferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29841.m002756" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038310t1" /inference="similar to AA sequence:ricco:29841.m002756" /note="transcript variant 3; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; inference alignment:PASA:2:TSA:PASAgasmbl_32456; alternateUTRof:Thecc1EG046833t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc136t24_C2" mRNA complement(join(16510557..16511213,16511943..16512051, 16512617..16512675,16512882..16512988,16513434..16513590, 16514337..16514396,16515572..16515700,16516411..16516458, 16516624..16516711,16517161..16517373)) /locus_tag="TCM_046833" /product="Pyridoxal phosphate (PLP)-dependent transferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29841.m002756" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038310t1" /inference="similar to AA sequence:ricco:29841.m002756" /note="transcript variant 4; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06535t00001; alternateUTRof:Thecc1EG046833t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc136t24_C2" CDS complement(join(16510761..16511213,16511943..16512051, 16512617..16512675,16512882..16512988,16513434..16513590, 16514337..16514396,16515572..16515700,16516411..16516458, 16516624..16516686)) /locus_tag="TCM_046833" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29841.m002756; paralog of Thecc1EG038310t1" /codon_start=1 /product="Pyridoxal phosphate (PLP)-dependent transferases superfamily protein isoform 1" /protein_id="EOY26644.1" /db_xref="TAIR:AT1G80360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PFW6" /translation="MGSYGMLARRIVETEMPVMVQIQELIRGAKNAMSLAQGVVYWQP PKWALDKVKDLIEEPSISRYGADEGLPELREALIRKLRQENNLRRSSVMVTAGANQAF VNLVLTLCDAGDSVVMFAPYYFNAYMSFQMTGVTKILVGPGYPKTLYPDADWLEKTLL ETKPVPKLVTVVNPGNPSGTYIPEPLLKRISDLCRNAGCWLVVDNTYEYFMYDGLKHS CIEGNHIVNIFSFSKAYGMMGWRVGYIAYPTEVEGLATQLLKVQDNIPICASIISQRL ALHSLEVGPEWVLERVKDLVKNREIVVEALSPLGEGAVKGGEGAIYLWATLPEKYVDD VKVVHWLANRHGVVVIPGTACGCPGHLRISFGGLMEDDCRAAAERLKRGLGELVKDGM VQ" CDS complement(join(16510761..16511213,16511943..16512051, 16512617..16512675,16512882..16512988,16513434..16513590, 16514337..16514396,16515572..16515700,16516411..16516458, 16516624..16516686)) /locus_tag="TCM_046833" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29841.m002756; paralog of Thecc1EG038310t1" /codon_start=1 /product="Pyridoxal phosphate (PLP)-dependent transferases superfamily protein isoform 1" /protein_id="EOY26645.1" /db_xref="TAIR:AT1G80360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PFW6" /translation="MGSYGMLARRIVETEMPVMVQIQELIRGAKNAMSLAQGVVYWQP PKWALDKVKDLIEEPSISRYGADEGLPELREALIRKLRQENNLRRSSVMVTAGANQAF VNLVLTLCDAGDSVVMFAPYYFNAYMSFQMTGVTKILVGPGYPKTLYPDADWLEKTLL ETKPVPKLVTVVNPGNPSGTYIPEPLLKRISDLCRNAGCWLVVDNTYEYFMYDGLKHS CIEGNHIVNIFSFSKAYGMMGWRVGYIAYPTEVEGLATQLLKVQDNIPICASIISQRL ALHSLEVGPEWVLERVKDLVKNREIVVEALSPLGEGAVKGGEGAIYLWATLPEKYVDD VKVVHWLANRHGVVVIPGTACGCPGHLRISFGGLMEDDCRAAAERLKRGLGELVKDGM VQ" CDS complement(join(16510761..16511213,16511943..16512051, 16512617..16512675,16512882..16512988,16513434..16513590, 16514337..16514396,16515572..16515700,16516411..16516458, 16516624..16516686)) /locus_tag="TCM_046833" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29841.m002756; paralog of Thecc1EG038310t1" /codon_start=1 /product="Pyridoxal phosphate (PLP)-dependent transferases superfamily protein isoform 1" /protein_id="EOY26646.1" /db_xref="TAIR:AT1G80360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PFW6" /translation="MGSYGMLARRIVETEMPVMVQIQELIRGAKNAMSLAQGVVYWQP PKWALDKVKDLIEEPSISRYGADEGLPELREALIRKLRQENNLRRSSVMVTAGANQAF VNLVLTLCDAGDSVVMFAPYYFNAYMSFQMTGVTKILVGPGYPKTLYPDADWLEKTLL ETKPVPKLVTVVNPGNPSGTYIPEPLLKRISDLCRNAGCWLVVDNTYEYFMYDGLKHS CIEGNHIVNIFSFSKAYGMMGWRVGYIAYPTEVEGLATQLLKVQDNIPICASIISQRL ALHSLEVGPEWVLERVKDLVKNREIVVEALSPLGEGAVKGGEGAIYLWATLPEKYVDD VKVVHWLANRHGVVVIPGTACGCPGHLRISFGGLMEDDCRAAAERLKRGLGELVKDGM VQ" CDS complement(join(16510761..16511213,16511943..16512051, 16512617..16512675,16512882..16512988,16513434..16513590, 16514337..16514396,16515572..16515700,16516411..16516458, 16516624..16516686)) /locus_tag="TCM_046833" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29841.m002756; paralog of Thecc1EG038310t1" /codon_start=1 /product="Pyridoxal phosphate (PLP)-dependent transferases superfamily protein isoform 1" /protein_id="EOY26647.1" /db_xref="TAIR:AT1G80360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PFW6" /translation="MGSYGMLARRIVETEMPVMVQIQELIRGAKNAMSLAQGVVYWQP PKWALDKVKDLIEEPSISRYGADEGLPELREALIRKLRQENNLRRSSVMVTAGANQAF VNLVLTLCDAGDSVVMFAPYYFNAYMSFQMTGVTKILVGPGYPKTLYPDADWLEKTLL ETKPVPKLVTVVNPGNPSGTYIPEPLLKRISDLCRNAGCWLVVDNTYEYFMYDGLKHS CIEGNHIVNIFSFSKAYGMMGWRVGYIAYPTEVEGLATQLLKVQDNIPICASIISQRL ALHSLEVGPEWVLERVKDLVKNREIVVEALSPLGEGAVKGGEGAIYLWATLPEKYVDD VKVVHWLANRHGVVVIPGTACGCPGHLRISFGGLMEDDCRAAAERLKRGLGELVKDGM VQ" gene complement(16527515..16542446) /locus_tag="TCM_028585" /note="dbxref CacaoGD:Thecc1EG028585" mRNA complement(join(16527515..16527700,16529476..16529593, 16530062..16530318,16531532..16531619,16531772..16531930, 16532313..16532557,16532932..16533129,16533263..16533734, 16534297..16534399,16535005..16535029,16535580..16536023, 16536742..16536842,16542173..16542446)) /locus_tag="TCM_028585" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29841.m002757" /inference="similar to AA sequence:Phytozome:GSVIVT01017172001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04928t00001" mRNA complement(join(16529373..16530318,16531532..16531616, 16531772..16531930,16532313..16532557,16532932..16533129, 16533263..16533734,16534297..16534413)) /locus_tag="TCM_028585" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29841.m002757" /inference="similar to AA sequence:Phytozome:GSVIVT01017172001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc163t13_C1; inference alignment:Newbler:10:TSA:cgbaP2_g04928t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc162t10" CDS complement(join(16529518..16529593,16530062..16530318, 16531532..16531619,16531772..16531930,16532313..16532557, 16532932..16533129,16533263..16533734,16534297..16534399, 16535005..16535029,16535580..16535726)) /locus_tag="TCM_028585" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY26648.1" /db_xref="Phytozome:GSVIVT01017172001" /db_xref="TAIR:AT1G80350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SEX2" /translation="MHGVVVIPGTACGCPRHLRISSGGLIEDNRRAAAERLKRGLEEL VKDGMVSSGELGHAGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNSLDDPLI RSKWMNVKKALSEETEVVKQLDAERRSFKEGSNGRRPSSPPIHAKSSFVFQPLDEYPT SSGAPMDDPDVWRPPSRDTTSRRPARAGQVGMRKSPQDGTWGGRGNTRTGTTGRGAKA GGSSRSNTGVRASATGKKGAGSGKSSKGDSANGDAEDGKSKRSQYEGPDPDLAAMLER DVLETTPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGK TLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSL CNARGASGEHESSRRVKSELLVQVDGVNNTATNEDGSRKIVMVLAATNFPWDIDEALR RRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVDIDEVARRTEGYSGDDLTNVCRDA SLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALAKVQRSVSQADIEKHEKWS KVTKSPSQIKPAKSPNPNPKGKP" CDS complement(join(16530037..16530318,16531532..16531616, 16531772..16531930,16532313..16532557,16532932..16533129, 16533263..16533691)) /locus_tag="TCM_028585" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY26649.1" /db_xref="Phytozome:GSVIVT01017172001" /db_xref="TAIR:AT1G80350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SEX2" /translation="MNVKKALSEETEVVKQLDAERRSFKEGSNGRRPSSPPIHAKSSF VFQPLDEYPTSSGAPMDDPDVWRPPSRDTTSRRPARAGQVGMRKSPQDGTWGGRGNTR TGTTGRGAKAGGSSRSNTGVRASATGKKGAGSGKSSKGDSANGDAEDGKSKRSQYEGP DPDLAAMLERDVLETTPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGV LMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPS TIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTATNEDGSRKIVMVLAATN FPWDIDEALRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVDIDEVARRTEGYSGD DLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALAKVQRSVSQA DIEKHEKWFTEFGSA" mobile_element 16539061..16540562 /note="source:CACAO_M_S_E84320_F17_scaffold_6 1 1502" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16540927..16544611) /note="source:CACAO_M_E33977_F20_scaffold_4 13008 16543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16542698..16544876 /note="source:CACAO_Mutator_E161_scaffold_1 9 2164" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(16544238..16545555) /note="source:scaffold_9_CACTA_0922 3823 5148" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16545565..16547276 /note="source:CACAO_Mutator_E1888_scaffold_9 3220 4977" /mobile_element_type="transposon:TIR/Mutator" mobile_element 16547671..16547736 /note="source:CACAO_Mutator_E1410_scaffold_6 5053 5118" /mobile_element_type="transposon:TIR/Mutator" mobile_element 16547881..16548427 /note="source:CACAO_Mutator_E1410_scaffold_6 5202 5713" /mobile_element_type="transposon:TIR/Mutator" mobile_element 16548403..16548475 /note="source:CACAO_Mutator_E1888_scaffold_9 362 436" /mobile_element_type="transposon:TIR/Mutator" mobile_element 16548928..16549053 /note="source:scaffold_10_CACTA_0141 1665 1790" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16549042..16549157 /note="source:CACAO_Mutator_E161_scaffold_1 5878 5993" /mobile_element_type="transposon:TIR/Mutator" mobile_element 16549157..16549296 /note="source:CACAO_Mutator_E161_scaffold_1 3921 4053" /mobile_element_type="transposon:TIR/Mutator" mobile_element 16549288..16550148 /note="source:CACAO_M_E56826_F244_scaffold_8 4226 5085" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16550857..16553817) /note="source:scaffold_4_CACTA_0503 1659 4604" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16551908..16554112) /note="source:INTACT776_F83_scaffold_2-int 3361 5540" /mobile_element_type="retrotransposon:LTR/Copia" gene 16551911..16555775 /locus_tag="TCM_028587" /note="dbxref CacaoGD:Thecc1EG028587" mRNA join(16551911..16552357,16552442..16553887, 16555513..16555775) /locus_tag="TCM_028587" /product="Gag protease polyprotein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007556t1" /inference="similar to AA sequence:Phytozome:POPTR_1126s00200.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc4Loc4270t1_G2" CDS 16552448..16553851 /locus_tag="TCM_028587" /note="paralog of Thecc1EG007556t1" /codon_start=1 /product="Gag protease polyprotein" /protein_id="EOY26650.1" /db_xref="Phytozome:POPTR_1126s00200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GBB7" /translation="MPPRRGRPPLYRSVGRGRGRARLSQPDPVERESDAPTFRAAPVV EPTEIPPPPPPPTATPGVHAMSLEAVQALAAFLNVIMGQAQAGRVPHTVPPAVSPVPP PPPLVPPPVPDVSIFKKLKEARQLGCTSFVGDLDATAAKDWITQVTETFVDMKLDDDM KLMVATRLLEKRARTWWSSVKSRSITSLTWIDFLQEFDGQYYTYFHQKEKKREFLSLQ QGNLTIEEYEARFNELMSYVPDLVKSEQDQASYFEEGLRNEIRERMTVTGREPHKEVV QMALRAEKLTNENRRMRAEFAKKRNPNVSSSQLPKRGKDTFASESTVSVPVISPRPPL SQLQQRPPRFNRSGMSSTSEKSFGGLNKCEKCGRYHVGECWGIRCFHCDQPGHIRSDC PQLGRATVAAPSPLTHTDMQRRDSSGVHPRQGVTVRSEMGSNTPAQPPLRPLTRSSTR VFAVMEDEARVRSGESE" mobile_element complement(16554213..16555009) /note="source:scaffold_4_CACTA_0503 564 1362" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16554320..16555321 /note="source:CACAO_M_E48701_F73_scaffold_6 4264 5264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16557089..16557454 /note="source:CACAO_Mutator_E1149_scaffold_5 2974 3349" /mobile_element_type="transposon:TIR/Mutator" mobile_element 16557413..16557574 /note="source:scaffold_1_CACTA_0009 9091 9252" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16557525..16557581 /note="source:CACAO_Mutator_E1888_scaffold_9 4729 4786" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(16557573..16557612) /note="source:CACAO_M_S_E64023_F13_scaffold_5 24121 24160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16557610..16557769 /note="source:CACAO_Mutator_E161_scaffold_1 6073 6232" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(16557777..16560179) /note="source:CACAO_Mutator_E1012_scaffold_5 998 3371" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(16560174..16561618) /note="source:CACAO_M_E33977_F20_scaffold_4 5406 6926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16561101..16561348 /note="source:CACAO_Mutator_E39_scaffold_1 3267 4068" /mobile_element_type="transposon:TIR/Mutator" mobile_element 16561349..16561911 /note="source:scaffold_1_CACTA_0009 13282 13824" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16563235..16563346) /note="source:CACAO_M_E22484_F328_scaffold_3 14176 14295" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16563269..16565932) /note="source:CACAO_M_S_E99244_F4_scaffold_9 3760 6341" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16579196..16579262 /note="source:CACAO_M_E1841_F5_scaffold_1 3115 3178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16579934..16581655 /note="source:CACAO_M_S_E84325_F60_scaffold_6 1 1722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16581661..16584623 /note="source:CACAO_M_S_E84326_F143_scaffold_6 1 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16585392..16585457) /note="source:INTACT296_F13_scaffold_9-int 15060 15125" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16594331..16605249 /locus_tag="TCM_028589" /note="dbxref CacaoGD:Thecc1EG028589" mRNA join(16594331..16594459,16595651..16595958, 16596188..16596470,16597257..16597393,16598446..16598538, 16598909..16599042,16599576..16599651,16600345..16600421, 16600525..16600558,16600664..16600813,16600892..16601026, 16601144..16601708,16605012..16605249) /locus_tag="TCM_028589" /product="Cyclin a2,3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017169001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038308t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17730.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc723t2_C1" CDS join(16595662..16595958,16596188..16596470, 16597257..16597393,16598446..16598538,16598909..16599042, 16599576..16599651,16600345..16600421,16600525..16600558, 16600664..16600813,16600892..16601026,16601144..16601197) /locus_tag="TCM_028589" /note="paralog of Thecc1EG038308t1" /codon_start=1 /product="Cyclin a2,3" /protein_id="EOY26651.1" /db_xref="Phytozome:POPTR_0001s17730.1" /db_xref="TAIR:AT1G80370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C968" /translation="MRKENVASANAGELNGRITRARAAALRASGQLLPLNAPNQPDQK RVLRANSKRTALDENNTNAPYNAGLQRKKRAVLQDVTNVCCNNSYRKCFNATKIQGKS SKQARKGHASASKVVPTAAAEVQVTQANLQKEGIQETAKLEPESEQVTCSVNLKVDAT LRLNSIKDDCIHYHWLANESCAIPSQPQSSPTNAEKVSFSGTSITSSDPDFIDIDSDK KDPQLCSLYAPDIYNNLRVVELVRRPYPNFMETIQRDITKSMRGILVDWLVEVSEEYK LVPDTLYLTVYLIDWFLSQNFIERQRLQLLGITCMLIASKYEEICAPRVEEFCFITDN TYTREEVLKMESQVLKYFGFQIFAPTAKTFLRRFLRAAQASYMSPSIELEYLANYLAE MTLIDYGFLNFPPSIVAASAVFLARWTLDQSCHPWNPTLEHHTAYNVSDLKTTVLALQ DLQLNTNGCPLNAIRMKYRQQRFKSVATFSSPKLLETLF" mobile_element complement(16603651..16603840) /note="source:CACAO_Again_on_E205_scaffold_9 8861 9050" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(16603934..16604985) /note="source:CACAO_Again_on_E205_scaffold_9 8345 8860" /mobile_element_type="transposon:TIR/hAT" mobile_element 16604985..16606723 /note="source:CACAO_LINE_E_239_scaffold_9 4 1738" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 16606723..16609089 /note="source:CACAO_M_E69760_F9_scaffold_9 6706 9055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16609190..16609735) /note="source:CACAO_M_S_E100312_F82_scaffold_9 3914 4459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16609736..16612424 /note="source:CACAO_LINE_E_166_scaffold_6 1725 4375" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(16612406..16612624) /note="source:CACAO_Again_on_E205_scaffold_9 8329 8508" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(16612618..16612996) /note="source:CACAO_Again_on_E205_scaffold_9 1 378" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(16614793..16615348) /note="source:CACAO_M_E53388_F15_scaffold_8 5836 6375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16615449..16616065) /note="source:CACAO_M_E53388_F15_scaffold_8 4855 5473" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16619258..16638027 /locus_tag="TCM_028593" /note="dbxref CacaoGD:Thecc1EG028593" mRNA join(16619258..16619381,16633681..16633997, 16634788..16635173,16635362..16635441,16635563..16635614, 16635702..16635743,16635865..16635943,16636026..16636057, 16636142..16636210,16636551..16636625,16637188..16637304, 16637412..16637462,16637569..16638027) /locus_tag="TCM_028593" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017163001" /inference="similar to AA sequence:ricco:29841.m002752" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07891t00001" mobile_element 16620341..16621413 /note="source:INTACT585_F12_scaffold_8-int 12204 13280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16622512..16622612) /note="source:INTACT39F_F22_scaffold_1-int 233 333" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16627505..16627536) /note="source:CACAO_M_S_E100312_F82_scaffold_9 6572 6600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16627537..16630627 /note="source:CACAO_M_E48985_F15_scaffold_6 1 3091" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(16633778..16633997,16634788..16635173, 16635362..16635441,16635563..16635614,16635702..16635743, 16635865..16635943,16636026..16636057,16636142..16636210, 16636551..16636625,16637188..16637304,16637412..16637462, 16637569..16637712) /locus_tag="TCM_028593" /note="dbxref ricco:29841.m002752" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY26652.1" /db_xref="TAIR:AT1G80380.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q944I4" /translation="MAAFTMLTPWQATSLHYNINICHYQNQNVYNSTKTINKAKSSSS LLSYHPSPVFSSLSTLAKSNMPPTNFSTSGSKYSWLQDNSMHHDASIASGLRQGPIYS VFPSKPAAVSSVQDLYEFICSGPLMDKVGLTPEKIAESIDKWLFYGSKLCRLFQLNEL YLTIPQKARFYHYYIPVFVWCEEQILQHMSKFKDGEEIPPLVIGFSAPQGCGKTTLVF ALDYLFRITGRKSATLSIDDFYLTAEGQAKLREENPGNALLELRGNAGSHDLPFSVET LTALSSLTKEGMRMNLPRYDKSAYSGRGDRADPSVWPEVEGPLTVVLFEGWMLGFKPL PTDNVKDVDPQLEMVNKNLEAYYDAWDKFIKAWIVIKIQDPSCVYQWRLQAEIAMREA GKPGMSDEEVKDFVSRYLPAYKAYLPTLYSEGPNGSDPKRLLLIEIDEGRNPILAD" gene complement(16638028..16638530) /locus_tag="TCM_028595" /note="dbxref CacaoGD:Thecc1EG028595" mRNA complement(join(16638028..16638331,16638411..16638530)) /locus_tag="TCM_028595" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g04950t00001" CDS complement(join(16638174..16638331,16638411..16638489)) /locus_tag="TCM_028595" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26653.1" /translation="MHHHSNRFHTMIMLTNAMTIRASSMPVCLRFVAAVAAMKHANAA WKIPAVAVPEFLEGDCQFREAIIPINLSFTTFIC" mobile_element 16639713..16641191 /note="source:scaffold_6_CACTA_0712 1 1479" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16641853..16649273 /note="source:scaffold_6_CACTA_0712 1480 8900" /mobile_element_type="transposon:TIR/CACTA" gene 16644876..16646925 /locus_tag="TCM_028597" /note="dbxref CacaoGD:Thecc1EG028597" mRNA join(16644876..16645485,16646601..16646925) /locus_tag="TCM_028597" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400021025" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038916t2" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS 16645055..16645450 /locus_tag="TCM_028597" /note="paralog of Thecc1EG038916t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26654.1" /translation="MTGDRSWMYRRLTSYGFIIDEFVNGVNEFINFACSNSTFMWENK IRCSYSRCSNNKFLDSDKVTKHILRKGFTGAYIIWSLDEEHDVEQSSRSRDRVEPHAS NEEHDYGEPTYEEEIENAYTRMVRDAVGP" mobile_element 16649746..16659066 /note="source:CACAO_Mutator_E1376_scaffold_6 1 9321" /mobile_element_type="transposon:TIR/Mutator" gene complement(16666388..16667735) /locus_tag="TCM_028600" /note="dbxref CacaoGD:Thecc1EG028600" mRNA complement(join(16666388..16666621,16666762..16666823, 16666929..16667040,16667135..16667316,16667436..16667735)) /locus_tag="TCM_028600" /product="AUX/IAA transcriptional regulator family protein" /inference="alignment:exonerate- protein:2:ricco:29841.m002749" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037947t1" /inference="similar to AA sequence:ricco:29841.m002749" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07105t00001" CDS complement(join(16666584..16666621,16666762..16666823, 16666929..16667040,16667135..16667316,16667436..16667650)) /locus_tag="TCM_028600" /note="dbxref ricco:29841.m002749; paralog of Thecc1EG037947t1" /codon_start=1 /product="AUX/IAA transcriptional regulator family protein" /protein_id="EOY26655.1" /db_xref="TAIR:AT3G04730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5F9" /translation="MSPENDAAGLNFEATELTLGLPGKSKVTSDGEAKSGTKRGFLET VDLNLGDKKCGQSQTDVQEAAKSSPVSKAQVVGWPPVRALRKNAMKSCKYVKVAVDGA PYLRKVDLEMYNSYQQLLSSLEDMFSCFTIRNCLNEKKIVDQVNGLEYVPTYEDKDGD WMLVGDVPWQMFVDSCKRLRLMKSSEAIGLAPRTPPKCSSTT" mobile_element 16676135..16677739 /note="source:INTACT700_F304_scaffold_7-int 14953 16498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16678681..16678745) /note="source:INTACT405F_F91_scaffold_4-int 15519 15585" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16678801..16679235 /note="source:INTACT1427F_F390_scaffold_9-int 3127 3687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16679236..16679859) /note="source:CACAO_M_S_E38315_F276_scaffold_4 18635 19260" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16692699..16692786) /note="source:INTACT556_F252_scaffold_2-int 1430 1512" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16693581..16693854 /note="source:CACAO_M_E12044_F76_scaffold_2 20346 20679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16693955..16695789) /note="source:CACAO_M_E10243_F73_scaffold_2 1 1848" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16700891..16701788 /note="source:INTACT599_F268_scaffold_9-int 11406 12284" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16703813..16703884) /note="source:scaffold_2_CACTA_0262 3315 3385" /mobile_element_type="transposon:TIR/CACTA" gene complement(16706219..16709340) /locus_tag="TCM_028602" /note="dbxref CacaoGD:Thecc1EG028602" mRNA complement(join(16706219..16706628,16708124..16708217, 16708881..16709340)) /locus_tag="TCM_028602" /product="Indole-3-acetic acid inducible 19" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g03840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020770t1" /inference="similar to AA sequence:ricco:29841.m002748" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15910t1" CDS complement(join(16706517..16706628,16708124..16708217, 16708881..16709250)) /locus_tag="TCM_028602" /note="dbxref ricco:29841.m002748; paralog of Thecc1EG020770t1" /codon_start=1 /product="Indole-3-acetic acid inducible 19" /protein_id="EOY26656.1" /db_xref="TAIR:AT3G15540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O24409" /translation="MAKEGLGLEITELRLGLPGGGAHSAQHGMDKNEKKRVFSEISED NENGKISNDQKMQSKSQVVGWPPVCSYRKKNSFSEKLDGSKASKIYVKVSMDGAPFLR KIDLGMHKGYSDLATALEMLFGEALRDAESCEFVPIYEDKDGDWMLAGDVPWEMFIES CKRLRIMKRADAKGFGVLRSREALNGSLKNE" gene complement(16714522..16715830) /locus_tag="TCM_028603" /note="dbxref CacaoGD:Thecc1EG028603" mRNA complement(join(16714522..16715088,16715246..16715346, 16715449..16715830)) /locus_tag="TCM_028603" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc4487t1_C2" CDS complement(join(16714922..16715088,16715246..16715346, 16715449..16715480)) /locus_tag="TCM_028603" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26657.1" /translation="MLPCLTSVSTRRFPVLTLTIKRILQHLPCTRPATVLQRKNKFEF GVKLLVTRLASRSTLKINHAASNGVEDRPLDDPNTAVVCTMRHIFIMWVTLCNHD" mobile_element complement(16720483..16720577) /note="source:INTACT459_F220_scaffold_4-int 8299 8401" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16721003..16721263) /note="source:INTACT459_F220_scaffold_4-int 7515 7732" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16721239..16723818) /note="source:CACAO_M_E12044_F76_scaffold_2 1871 4314" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16726492..16729588 /note="source:CACAO_M_S_E31651_F51_scaffold_3 1 3088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16729589..16732604 /note="source:CACAO_M_S_E84336_F318_scaffold_6 1 3016" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16732977..16733047) /note="source:INTACT459_F220_scaffold_4-int 8336 8404" /mobile_element_type="retrotransposon:LTR/Copia" gene 16733798..16738158 /locus_tag="TCM_028604" /note="dbxref CacaoGD:Thecc1EG028604" mRNA join(16733798..16734220,16737369..16738158) /locus_tag="TCM_028604" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.30 coverage" CDS 16737524..16737751 /locus_tag="TCM_028604" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26658.1" /translation="MCHILHTGTKRNGNPLTSKTWINDMLPVTLLKRGKFRFDSRFIC NSKNKADESLGRSLSTVSDASGFSLLRKSSR" mobile_element 16739659..16739765 /note="source:scaffold_6_CACTA_0700 10653 10745" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16739751..16739986) /note="source:INTACT599_F268_scaffold_9-int 11402 11628" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16740947..16744296) /locus_tag="TCM_028605" /note="dbxref CacaoGD:Thecc1EG028605" mRNA complement(join(16740947..16741449,16742325..16742393, 16742641..16742809,16742923..16743036,16743184..16743320, 16743432..16743568,16743678..16744296)) /locus_tag="TCM_028605" /product="Myristoyl-acyl carrier thioesterase, chloroplastic-like protein" /inference="alignment:exonerate- protein:2:ricco:29841.m002744" /inference="similar to AA sequence:ricco:29848.m004677" /note="quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1923t1" CDS complement(join(16741204..16741449,16742325..16742393, 16742641..16742809,16742923..16743036,16743184..16743320, 16743432..16743568,16743678..16744089)) /locus_tag="TCM_028605" /note="dbxref ricco:29848.m004677" /codon_start=1 /product="Myristoyl-acyl carrier thioesterase, chloroplastic-like protein" /protein_id="EOY26659.1" /db_xref="TAIR:AT1G08510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39513" /translation="MLCAYFRLTVNSLLFLIWTDFSKVGGESSIQGLITSAASNIHQV QCFHLTIMAASSNIMTSKFFMAISPSSWNSTNKSKICLQQIDTSSNTNGKMVKFTRDS SLKVKLQAQALLTNDSRATSMIESLKDEEMMTSPPATMEHLTTEGRLINDGLVFQQNF SIRSFEIDSEYKVSARAIMNYLQESSLNHRKKMGMSSDSLVGVTPEMIKRDLLWIFRG MCIEVDRYPSWADVVQIYHRIYTSGRTGLRLEWIVNDSKTGETLVRASCLAVMMNKKT RKTCKFPEEVKQELKPYLTTDAEPLFEADKILCPQVGKMDNIRTGLTSYWHDLDFNYH VNNAKYLDWILEGTPTSLIHSHELSRVSLQYRKECLKDDVIQSLSRVVTKETGLSTNN QEIELEHVLRLESGPELAGARTAWRPKSICRQTIN" mobile_element complement(16748160..16749592) /note="source:CACAO_M_S_E17777_F2_scaffold_3 10479 11913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16753326..16756207 /note="source:INTACT524_F2_scaffold_3-int 4149 7029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16756206..16757649) /note="source:CACAO_M_E52278_F17_scaffold_7 59 1532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16757960..16758755 /note="source:CACAO_M_S_E4911_F76_scaffold_1 1788 2577" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16759390..16760027) /note="source:CACAO_M_E69760_F9_scaffold_9 12207 12826" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16760028..16761773) /note="source:CACAO_M_S_E31650_F33_scaffold_3 1211 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16762360..16764638 /note="source:CACAO_M_S_E120308_F33_scaffold_10 2323 4591" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16764739..16765226 /note="source:CACAO_M_E53088_F15_scaffold_8 1985 2473" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16765370..16766195) /note="source:CACAO_M_E44265_F33_scaffold_5 4019 4845" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16766296..16766890 /note="source:CACAO_M_E101_F15_scaffold_1 2500 3094" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16766891..16768022) /note="source:CACAO_M_E44599_F33_scaffold_6 2376 3509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16768123..16769039) /note="source:CACAO_M_E59623_F33_scaffold_9 4363 5280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16769040..16770258) /note="source:CACAO_M_E3891_F15_scaffold_1 1887 3107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16770359..16771758) /note="source:CACAO_M_E44265_F33_scaffold_5 496 1896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16771859..16773678) /note="source:CACAO_M_E12297_F14_scaffold_3 6346 8165" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16773637..16773684 /note="source:CACAO_M_E14081_F316_scaffold_3 13581 13627" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16773678..16773954) /note="source:CACAO_M_E69760_F9_scaffold_9 1 266" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16773955..16774063 /note="source:CACAO_M_E3780_F76_scaffold_1 2553 2659" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16776801..16781615 /locus_tag="TCM_028608" /note="dbxref CacaoGD:Thecc1EG028608" mRNA join(16776801..16776805,16777608..16778473, 16780071..16780196,16780283..16780568,16780962..16781168, 16781301..16781615) /locus_tag="TCM_028608" /product="RING/U-box superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29841.m002741" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038306t1" /inference="similar to AA sequence:Phytozome:Glyma13g43770.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc918t1" CDS join(16777809..16778473,16780071..16780196, 16780283..16780568,16780962..16781138) /locus_tag="TCM_028608" /note="paralog of Thecc1EG038306t1" /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="EOY26660.1" /db_xref="Phytozome:Glyma13g43770.1" /db_xref="TAIR:AT1G80400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VY23" /translation="MDSSSLEESSEQTDRYPLLMERVESHSDQEHIIDITRHDDASSS SSHDEQPPGLNLAQSEDRPSSSTQAPTNQTSSSNRLNSRNSSFMRRSDGYGRRRRSPL NSGLWISVELVVTVSQIIASIVVLSLSRNEKPQAPLFAWIVGYASGCIATLPILYWRF RIRNQGIEQDLSHSSQGSSHGNPSESTSYTAISVTQASDEENNRITESATRNSQIAGT LSTRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIG YAMPFILCATICCCLPCIISVLGFREDFSQTRGATVESINALPIYKFKSRKSGNVNNQ DNSAGDGGILAAGTAKERAISGEDAVCCICLAKYADNDELRELPCIHVFHVECVDKWL KINASCPLCKSEVGESSSGLPLARD" gene complement(16781769..16797343) /locus_tag="TCM_028610" /note="dbxref CacaoGD:Thecc1EG028610" mRNA complement(join(16781769..16782655,16783287..16783387, 16783491..16783602,16783694..16783752,16783910..16784007, 16784127..16784183,16784536..16784667,16784789..16784896, 16784974..16785097,16785870..16786100,16786184..16786266, 16786374..16786502,16786963..16787058,16787169..16787223, 16787500..16787570,16787707..16787760,16787852..16787929, 16788795..16788927,16789451..16789566,16789669..16789740, 16791834..16791939,16792758..16792873,16794545..16794694, 16794785..16794867,16795590..16795668,16796792..16797343)) /locus_tag="TCM_028610" /product="Tetratricopeptide repeat (TPR)-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s17830.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17830.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3729t2" mRNA complement(join(16781769..16782655,16783287..16783387, 16783491..16783602,16783694..16783752,16783910..16784007, 16784127..16784183,16784536..16784667,16784789..16784896, 16784974..16785097,16785870..16786100,16786184..16786266, 16786374..16786502,16786963..16787058,16787169..16787223, 16787500..16787570,16787707..16787760,16787852..16787929, 16788795..16788927,16789451..16789566,16789669..16789740, 16791834..16791939,16792758..16792873,16794545..16795070)) /locus_tag="TCM_028610" /product="Tetratricopeptide repeat-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s17830.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17830.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b027668t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3729t2" CDS complement(join(16782453..16782655,16783287..16783387, 16783491..16783602,16783694..16783752,16783910..16784007, 16784127..16784183,16784536..16784667,16784789..16784896, 16784974..16785097,16785870..16786100,16786184..16786266, 16786374..16786502,16786963..16787058,16787169..16787223, 16787500..16787570,16787707..16787760,16787852..16787929, 16788795..16788927,16789451..16789566,16789669..16789740, 16791834..16791939,16792758..16792873,16794545..16794694, 16794785..16794867,16795590..16795668,16796792..16796842)) /locus_tag="TCM_028610" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-containing protein isoform 1" /protein_id="EOY26661.1" /db_xref="Phytozome:POPTR_0001s17830.1" /db_xref="TAIR:AT1G80410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HS68" /translation="MGASLPPKEANLFKLIVKSYETKQYKKGLKAADAILKKFPDHGE TLSMKGLTLNCMDRKTEAYELVRLGVKNDVKSHVCWHVYGLLHRSDREYREAIKCYRN ALKRDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFAVAHHLNSN GAKAVEILEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGFLERALEELHKKESK IVDKLTYKEQEVSLLVKLGRLEDGANIYKTLLNMNPDNYRYYEGLQKCFGLYTENGKY SSDEIDQLDALYKSLAQQYTWSSAVKRIPLDFLQGGKFHEAAVNYIKPLLTKGVPSLF SDLSPLYDHPGKADILEQLILELEQSIRSTGTYPDRTEKEPPSTLLWTLFFLAQHYDR RGQYDVALSKIDEAIQHTPTVIDLYSVKSRIMKHAGDLVAAASLADEARCMDLADRYI NSESVKRMLQADQVALAEKTAVLFTKDGDQHNNLHDMQCMWYELASGESYFRQDDLGR ALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHKAAAGA IRCYLKLYDSPLNSPAEEEDDASKTPSQKKKMKKQRKAERAKKEAEEKIEESSAGGIS KSGKRHVKPVDPDPYGEKLVKTEDPLLEATKYLKLLQKNSPDSLETHLLSFEVNMRKQ KILLAFQAVKQLLRLDAENPDSHCCLIKFFHKVGSMPDPVTDGDKLVWSVLEAERPSI SQLQEKTLGEANEVFLGKHEDSLMHRVAVAEMLYTLEPTKKVEAIKLIEDSTNKVVSM DGALGPVTEWKLKDCIAVHKLLEKVLIDHDAALRWKVRCAEFFPYSTYFEGSCSSAVH NVLNNQVSKTPVNGGTSHPEISQGANSIISNGKLEAFKNLTI" CDS complement(join(16782453..16782655,16783287..16783387, 16783491..16783602,16783694..16783752,16783910..16784007, 16784127..16784183,16784536..16784667,16784789..16784896, 16784974..16785097,16785870..16786100,16786184..16786266, 16786374..16786502,16786963..16787058,16787169..16787223, 16787500..16787570,16787707..16787760,16787852..16787929, 16788795..16788927,16789451..16789566,16789669..16789740, 16791834..16791939,16792758..16792867)) /locus_tag="TCM_028610" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-containing protein isoform 2" /protein_id="EOY26662.1" /db_xref="Phytozome:POPTR_0001s17830.1" /db_xref="TAIR:AT1G80410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HS68" /translation="MRDLTGFVETRQQLLTLKPNHRMNWIGFAVAHHLNSNGAKAVEI LEAYEGTLEDDYPPDNERCEHGEMLLYKISLLEECGFLERALEELHKKESKIVDKLTY KEQEVSLLVKLGRLEDGANIYKTLLNMNPDNYRYYEGLQKCFGLYTENGKYSSDEIDQ LDALYKSLAQQYTWSSAVKRIPLDFLQGGKFHEAAVNYIKPLLTKGVPSLFSDLSPLY DHPGKADILEQLILELEQSIRSTGTYPDRTEKEPPSTLLWTLFFLAQHYDRRGQYDVA LSKIDEAIQHTPTVIDLYSVKSRIMKHAGDLVAAASLADEARCMDLADRYINSESVKR MLQADQVALAEKTAVLFTKDGDQHNNLHDMQCMWYELASGESYFRQDDLGRALKKFLA VEKHYADITEDQFDFHSYCLRKMTLRAYVEMLKFQDRLHSHAYFHKAAAGAIRCYLKL YDSPLNSPAEEEDDASKTPSQKKKMKKQRKAERAKKEAEEKIEESSAGGISKSGKRHV KPVDPDPYGEKLVKTEDPLLEATKYLKLLQKNSPDSLETHLLSFEVNMRKQKILLAFQ AVKQLLRLDAENPDSHCCLIKFFHKVGSMPDPVTDGDKLVWSVLEAERPSISQLQEKT LGEANEVFLGKHEDSLMHRVAVAEMLYTLEPTKKVEAIKLIEDSTNKVVSMDGALGPV TEWKLKDCIAVHKLLEKVLIDHDAALRWKVRCAEFFPYSTYFEGSCSSAVHNVLNNQV SKTPVNGGTSHPEISQGANSIISNGKLEAFKNLTI" misc_feature complement(join(16785068..16785097,16785204..16785898)) /locus_tag="TCM_028610" /note="Gene fragment of Thecc1EG028610t1; dbxref gnl|CacaoGD|Thecc1EG028610t1; quality class is mediumpartial-partof is thecc1eg028610t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc357t7; dbxref CacaoGD:Thecc1EG028611t1" gene complement(16799190..16806584) /locus_tag="TCM_028612" /note="dbxref CacaoGD:Thecc1EG028612" mRNA complement(join(16799190..16800039,16801385..16801471, 16801590..16801717,16801810..16801902,16802591..16802702, 16803187..16803375,16803464..16803697,16806411..16806584)) /locus_tag="TCM_028612" /product="BRCT domain-containing DNA repair protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29841.m002739" /inference="similar to AA sequence:frave:gene05983" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08505t00001" mRNA complement(join(16799571..16800039,16801385..16801471, 16801590..16801700,16801823..16801902,16802591..16802702, 16803187..16803375,16803464..16803697,16803951..16803989)) /locus_tag="TCM_028612" /product="BRCT domain-containing DNA repair protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g003040.1" /inference="alignment:exonerate- protein:2:ricco:29841.m002739" /inference="similar to AA sequence:frave:gene05983" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08505t00001; inference alignment:Newbler:10:TSA:cgbaB_g08505t00001" CDS complement(join(16799701..16800039,16801385..16801471, 16801590..16801700,16801823..16801902,16802591..16802702, 16803187..16803375,16803464..16803628)) /locus_tag="TCM_028612" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene05983" /codon_start=1 /product="BRCT domain-containing DNA repair protein, putative isoform 2" /protein_id="EOY26664.1" /db_xref="TAIR:AT1G80420.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HX38" /translation="MSDSKTSRSGGVGKTQTRNLPSWMSSRENESKSNKSNDGNGHGE GSNNTNFSKLMEGVVFVLSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLVCAFQNT PKFRQVEADCGTIVSKEWILECYAQKKLVDIDPYLMHAGKPWRRSNISHETSEEQQGS SSTKSYKQVEKSQSKRTSSPYKNKASHPAKESFPPPEVKKWVIYDFIGTISWLESQEE KPEPHEIKQIAGAGILTCLQDAIDCLEQKQDVRQITEQWSFVPRVVKELAMFEGSEHG SLTKEDLLRKAKVCKQIYEDELTRLDGDSSSKNKKPKTDGGEEGKKWGTKASSRDATG YDSDETIEMTEEEIDLAYKNFASETL" CDS complement(join(16799701..16800039,16801385..16801471, 16801590..16801717,16801810..16801902,16802591..16802702, 16803187..16803375,16803464..16803628)) /locus_tag="TCM_028612" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene05983" /codon_start=1 /product="BRCT domain-containing DNA repair protein, putative isoform 1" /protein_id="EOY26663.1" /db_xref="TAIR:AT1G80420.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HX38" /translation="MSDSKTSRSGGVGKTQTRNLPSWMSSRENESKSNKSNDGNGHGE GSNNTNFSKLMEGVVFVLSGFVNPERSTLRSQALAMGAEYQPDWNSNCTLLVCAFQNT PKFRQVEADCGTIVSKEWILECYAQKKLVDIDPYLMHAGKPWRRSNISHETSEEQQGS SSTKSYKQVEKSQSKRTSSPYKVAFDLVIYFQNKASHPAKESFPPPEVKKWVIYDFIG TISWLESQEEKPEPHEIKQIAGAGILTCLQDAIDCLEQKQDVRQITEQWSFVPRVVKE LAMFEGSEHGSLTKEDLLRKAKVCKQIYEDELTRLDGDSSSKNKKPKTDGGEEGKKWG TKASSRDATGYDSDETIEMTEEEIDLAYKNFASETL" mobile_element 16804990..16809823 /note="source:CACAO_hAT_E2821_scaffold_6 1 4834" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(16809647..16809853) /note="source:scaffold_2_CACTA_0276 10624 10773" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16809859..16810062) /note="source:INTACT44_F119_scaffold_6-int 5821 6025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16810068..16810307) /note="source:INTACT135F_F90_scaffold_2-int 13756 13999" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16810919..16812627 /note="source:scaffold_10_CACTA_0130 7926 9509" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16814929..16818065) /note="source:INTACT44_F119_scaffold_6-int 2665 5815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16818789..16818838 /note="source:scaffold_10_CACTA_0130 1140 1189" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16818791..16818843) /note="source:scaffold_10_CACTA_0130 1143 1194" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16819374..16819710) /note="source:INTACT44_F119_scaffold_6-int 1388 1723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16819868..16820073) /note="source:INTACT44_F119_scaffold_6-int 1178 1383" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16820671..16821983 /locus_tag="TCM_028615" /note="dbxref CacaoGD:Thecc1EG028615" mRNA join(16820671..16820983,16821384..16821983) /locus_tag="TCM_028615" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS join(16820900..16820983,16821384..16821668) /locus_tag="TCM_028615" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26665.1" /translation="MEMPKGIPNVEALRGVPSVEVLRDISKCRCSKQRNPKGVPSTEV PKGISRAEALRGVSSVKAPKGHSKPKSAHGCSKCGNAQGSSMHGSVQEHYKHKNTQKQ AWNNYLYGEVKVIQNKWQSS" mobile_element 16824757..16826126 /note="source:CACAO_hAT_E2824_scaffold_6 1 1370" /mobile_element_type="transposon:TIR/hAT" gene 16825179..16830184 /locus_tag="TCM_028616" /note="dbxref CacaoGD:Thecc1EG028616" mRNA join(16825179..16825286,16827362..16827745, 16829966..16830184) /locus_tag="TCM_028616" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(16825260..16825286,16827362..16827604) /locus_tag="TCM_028616" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26666.1" /translation="MFFYYLYKTTDRVILSADVEYINLYMKNMDADITEELLQDKIYE FGKIVSLFVTKDETDSSKGFGFDKFEKTLNNEKNDNKVETQRNER" mobile_element complement(16833841..16833879) /note="source:CACAO_M_S_E17277_F85_scaffold_3 2270 2305" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16833880..16835443 /note="source:CACAO_M_E33560_F82_scaffold_4 1 1569" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16835115..16851040 /locus_tag="TCM_028618" /note="dbxref CacaoGD:Thecc1EG028618" mRNA join(16835115..16835603,16838849..16839305, 16839430..16839605,16839715..16839803,16839913..16840015, 16840123..16840265,16840452..16841437,16841538..16841637, 16844780..16844862,16846196..16846277,16846365..16846475, 16850328..16850541,16850703..16850975) /locus_tag="TCM_028618" /product="Centromere protein C, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05530.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s05530.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc301t2" mobile_element complement(16835439..16836547) /note="source:CACAO_M_E58198_F82_scaffold_9 1 1131" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16837229..16837269 /note="source:scaffold_5_CACTA_0610 5708 5748" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16838039..16838489) /note="source:CACAO_on_S_E390_scaffold_9 2410 2860" /mobile_element_type="transposon:TIR/Mutator" mRNA join(16839023..16839305,16839430..16839605, 16839715..16839803,16839913..16840015,16840123..16840265, 16840452..16841431,16841538..16841637,16844780..16844862, 16846196..16846277,16846365..16846475,16850328..16850541, 16850703..16850873) /locus_tag="TCM_028618" /product="Centromere protein C, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05530.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s05530.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc292t4; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc301t2" CDS join(16839120..16839305,16839430..16839605, 16839715..16839803,16839913..16840015,16840123..16840265, 16840452..16841437,16841538..16841637,16844780..16844862, 16846196..16846277,16846365..16846475,16850328..16850458) /locus_tag="TCM_028618" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Centromere protein C, putative isoform 1" /protein_id="EOY26667.1" /db_xref="Phytozome:POPTR_0003s05530.1" /db_xref="TAIR:AT1G15660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U0P0" /translation="MNDPNLTPSKQKEMPLQTLAPDPLEGYTGLSLFARTFASLPNPP RPYDPDDLQHSHHFLKSMPLQSPNKLLEQAKAIVDESSELVNLDTSSSDAEVMENLRE RRPALGRKRARFSLKPNSSQPTGNLGLSLDIDKLKDPEEFFTAFERAETAKREIQKQT DGVLMDLDQNIQSMAARPRRPGILRRSVKYKHHYSTAMSPVENFEEEILSPLGCSQQE ESDPNVELQEKELSGLVTNAEKKVNELLDHLLTSNYDKDEAVSLLQERLQIKPINLEK ICLPDMQDIRRIDLKASRESLAKPRNSVSDIQSLMKGISKRTPKRQAESSVHHLASCT PPRSPLASISLLKKQMLQSDVLSDPFSTDDIDRLPVRNSSPIGSISKQSGQVDTHKEL SGSHNNNSRTLQQQAESSAHHSASPTPPRNPLASILLQKNQISQSDSPSHPFSTDNID QSPGRNASLVHGINKQSSQVDMEKELNMSHMLRSPILEANQTETANASSELNGRDFAG LFDKFVNDNARRFNSGSPVVSSGSLADLESNSIIRPEDDADSHTIKLNEFSVRVEDIP MEAVASAQTQLNVEGPTIDNSHIIQREPDEYNPAMAEDCTMDGSMKTAESGQELHGQY NKGKTKPHPRNERMRKALSRRQSLAGSGTTYNAEGRRRSTRIRSRPLEFWKGERFLYG RIHSSLATVIGIKYESPVRPDGKNATLKVKSFVSDEYKDLVERAARF" CDS join(16839120..16839305,16839430..16839605, 16839715..16839803,16839913..16840015,16840123..16840265, 16840452..16841431,16841538..16841637,16844780..16844862, 16846196..16846277,16846365..16846475,16850328..16850458) /locus_tag="TCM_028618" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Centromere protein C, putative isoform 2" /protein_id="EOY26668.1" /db_xref="Phytozome:POPTR_0003s05530.1" /db_xref="TAIR:AT1G15660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U0P0" /translation="MNDPNLTPSKQKEMPLQTLAPDPLEGYTGLSLFARTFASLPNPP RPYDPDDLQHSHHFLKSMPLQSPNKLLEQAKAIVDESSELVNLDTSSSDAEVMENLRE RRPALGRKRARFSLKPNSSQPTGNLGLSLDIDKLKDPEEFFTAFERAETAKREIQKQT DGVLMDLDQNIQSMAARPRRPGILRRSVKYKHHYSTAMSPVENFEEEILSPLGCSQQE ESDPNVELQEKELSGLVTNAEKKVNELLDHLLTSNYDKDEAVSLLQERLQIKPINLEK ICLPDMQDIRRIDLKASRESLAKPRNSVSDIQSLMKGISKRTPKRQAESSVHHLASCT PPRSPLASISLLKKQMLQSDVLSDPFSTDDIDRLPVRNSSPIGSISKQSGQVDTHKEL SGSHNNNSRTLQQQAESSAHHSASPTPPRNPLASILLQKNQISQSDSPSHPFSTDNID QSPGRNASLVHGINKQSSQVDMEKELNMSHMLRSPILEANQTETANASSELNGRDFAG LFDKFVNDNARRFNSGSPVVSSGSLADLESNSIIRPEDDADSHTIKLNEFSVEDIPME AVASAQTQLNVEGPTIDNSHIIQREPDEYNPAMAEDCTMDGSMKTAESGQELHGQYNK GKTKPHPRNERMRKALSRRQSLAGSGTTYNAEGRRRSTRIRSRPLEFWKGERFLYGRI HSSLATVIGIKYESPVRPDGKNATLKVKSFVSDEYKDLVERAARF" mRNA join(16839691..16839803,16839913..16840265, 16840452..16841437,16841538..16841637,16844780..16844862, 16846196..16846277,16846365..16846475,16850328..16851040) /locus_tag="TCM_028618" /product="Centromere protein C, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05530.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s05530.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b027675t1a2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc301t2" CDS join(16840115..16840265,16840452..16841437, 16841538..16841637,16844780..16844862,16846196..16846277, 16846365..16846475,16850328..16850458) /locus_tag="TCM_028618" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Centromere protein C, putative isoform 3" /protein_id="EOY26669.1" /db_xref="Phytozome:POPTR_0003s05530.1" /db_xref="TAIR:AT1G15660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RUV0" /translation="MFRRSVKYKHHYSTAMSPVENFEEEILSPLGCSQQEESDPNVEL QEKELSGLVTNAEKKVNELLDHLLTSNYDKDEAVSLLQERLQIKPINLEKICLPDMQD IRRIDLKASRESLAKPRNSVSDIQSLMKGISKRTPKRQAESSVHHLASCTPPRSPLAS ISLLKKQMLQSDVLSDPFSTDDIDRLPVRNSSPIGSISKQSGQVDTHKELSGSHNNNS RTLQQQAESSAHHSASPTPPRNPLASILLQKNQISQSDSPSHPFSTDNIDQSPGRNAS LVHGINKQSSQVDMEKELNMSHMLRSPILEANQTETANASSELNGRDFAGLFDKFVND NARRFNSGSPVVSSGSLADLESNSIIRPEDDADSHTIKLNEFSVRVEDIPMEAVASAQ TQLNVEGPTIDNSHIIQREPDEYNPAMAEDCTMDGSMKTAESGQELHGQYNKGKTKPH PRNERMRKALSRRQSLAGSGTTYNAEGRRRSTRIRSRPLEFWKGERFLYGRIHSSLAT VIGIKYESPVRPDGKNATLKVKSFVSDEYKDLVERAARF" gene complement(16850743..16852962) /locus_tag="TCM_028619" /note="dbxref CacaoGD:Thecc1EG028619" mRNA complement(join(16850743..16850960,16851046..16851330, 16852075..16852315,16852534..16852626,16852727..16852962)) /locus_tag="TCM_028619" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(16850869..16850960,16851046..16851330, 16852075..16852315,16852534..16852626,16852727..16852813)) /locus_tag="TCM_028619" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26670.1" /translation="MIGRNQNMIRALKMADDKWCNDPLELKSLILEFSPRKMKSIELL VLWPLSRLQVGIVSNQDHSFKASISLNRNILWDAIGGKKKVVLIKWDIVCCPKRIGGL GIRKTAEMNKALLSKLGWKIEDGDQGLRAHVLRAKYLKAPISNPREFSMVGLCPNNRR YWIFGFMGRLDMGTILKAKLHAIYMGLALAWDHGCQLIVVESDSKLAVQKIHQTIQDK SSFTCYSFYSTVNVERLIIKLHSPPTELSFLLQDGLLGVARPRAVVD" mobile_element complement(16851909..16851951) /note="source:scaffold_5_CACTA_0603 942 984" /mobile_element_type="transposon:TIR/CACTA" gene complement(16853474..16855052) /locus_tag="TCM_028620" /note="dbxref CacaoGD:Thecc1EG028620" mRNA complement(join(16853474..16854120,16854213..16854572, 16854879..16855052)) /locus_tag="TCM_028620" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(16853960..16854120,16854213..16854572, 16854879..16854921)) /locus_tag="TCM_028620" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26671.1" /translation="MKRFLQIIMWITIKGLISQNKFASLVKGFSDRVNEEVPTMESTS GEVPNSMQCNLNKDKLKNVAKPSQQKKKDQHGTINSKVVDPVIKRSLKGISKFIFQAG TSLKQGGQVFKARPKNNMSSNVKQTGIKIKEGAPPISKEGGNEQVRSIEVDKAIMMDT TIVADENNLVLSNVSMEGGGLPSLGDH" mobile_element complement(16855335..16855504) /note="source:CACAO_M_S_E5285_F300_scaffold_1 18925 19092" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(16856895..16857722) /locus_tag="TCM_028621" /note="dbxref CacaoGD:Thecc1EG028621" mRNA complement(join(16856895..16857218,16857294..16857398, 16857471..16857722)) /locus_tag="TCM_028621" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(16857150..16857218,16857294..16857398, 16857471..16857617)) /locus_tag="TCM_028621" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26672.1" /translation="MMEKALPNPNNESDLLKRTNKTFKHLKVVNEDKDEDTKTSVVVE NGFDHWDDVKHGDEMQFDEVISDDESDSNQSPCVEGQKLRVLGFQTLTARINIFGNLK GGIR" mobile_element complement(16858956..16859027) /note="source:CACAO_M_E5800_F12_scaffold_2 20979 21046" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16861770..16864874 /note="source:CACAO_M_E48991_F51_scaffold_6 1 3105" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16867304..16868815 /locus_tag="TCM_028622" /note="dbxref CacaoGD:Thecc1EG028622" mRNA 16867304..16868815 /locus_tag="TCM_028622" /product="Galactose oxidase/kelch repeat superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29841.m002737" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028623t1" /inference="similar to AA sequence:ricco:29841.m002737" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3615t1" CDS 16867438..16868511 /locus_tag="TCM_028622" /note="dbxref ricco:29841.m002737; paralog of Thecc1EG028623t1" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein, putative" /protein_id="EOY26673.1" /db_xref="TAIR:AT1G15670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEJ8" /translation="MDLIPNLPNDIARECLVRVSYDQFSTLLSTCKGWKTEIELPEFF HLRKATGHGQQLVIVAQARVDWDTKQGVLKECSAKPVYGLSLLKPDTGNWVDLPQLPD EFPDGLPYFCQLVAVGFDLVVMGGLDPVTWEVSDSVFVFNFLTARWRRGADMPGVRRS LFGCASDADGLVYVAGGHDEEKNALRSALAYDVAKDEWISLPDMARERDECKGVFHRG KFHVIGGYCTDMQGRFGKSAEVFDMAMWRWDHVQDDFLEASTCPRTCIDGDGADIYMI CEGDVAALKDGRWQVIAKLPADLCKIAYMTRWQDKLLAIGSSRFDEPHNAYVLNLTKS EWAKLETPEKYYGHVQSGCFLEI" gene 16871729..16873588 /locus_tag="TCM_028623" /note="dbxref CacaoGD:Thecc1EG028623" mRNA 16871729..16873588 /locus_tag="TCM_028623" /product="Galactose oxidase/kelch repeat superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s17860.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028622t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17860.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3617t1" CDS 16871903..16872973 /locus_tag="TCM_028623" /note="paralog of Thecc1EG028622t1" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein, putative" /protein_id="EOY26674.1" /db_xref="Phytozome:POPTR_0001s17860.1" /db_xref="TAIR:AT1G80440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEJ8" /translation="MSAMELIPGLPNDIARECLIRVPYNNFSNIASTCKDWKVEIHLP EFFRHRKAAGCSKHVMVMTQTRVSPRGNFGLKCQAMLVYRLVLCEPDTGDWCELPSVP ELSDGLPMFCQVVGVGSNLVVMGGLDPDTFEVRNAVYVYNFISARWRRGADMPGVRRI FFGCSSDLDRMVYVAGGHDGDKNALKSAMAYDVAANMWVQLPDMERERDECKGIFHLG KFHVIGGYCTERQGQFESSAEQFDIATFQWSPVQDNLLLTGTCPRTCVAADGKLYMCR EGYVTRLEGDTWTPIAELPVEVCKTAHMCAWKDKLLVIGSWSFGEPHTAYVLNLRSYT WSRMEVGEEYSGHVQSGCYLEL" mobile_element 16880752..16882436 /note="source:CACAO_M_S_E14008_F3_scaffold_2 1 1690" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16882682..16889159) /locus_tag="TCM_028626" /note="dbxref CacaoGD:Thecc1EG028626" mRNA complement(join(16882682..16883064,16883172..16883196, 16884722..16884917,16885035..16885174,16888311..16888848, 16889048..16889159)) /locus_tag="TCM_028626" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g010620.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(16882895..16883064,16883172..16883196, 16884722..16884917,16885035..16885174,16888311..16888848, 16889048..16889052)) /locus_tag="TCM_028626" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26675.1" /translation="MRMTWEICKLRYHHGGKLVRTPRVRYVNGSVAEYDEDPNQIYYW TILSTIKDLGYDLAKTVKDYYIEDGKSLNTSLKLLGDYSNDAKLVDQLTKKMTLDIYV EQLNCANDMNIPIALLDSIEVSEGINELDEDVVMTGTKSNDDNGWPTPSLEDFDSDLQ GVNVNAIEHDNNRDKGVNEVNVGLDNSNDVRSDSSEDYEDRLMDVKWVTDEDTDADEE LEVVREDLREPNFDTDKVDGYKSEYFDSSDPMSFIDTSYGSDEDDAQRVKSSDKYYNP MVPFDDFVVGLRFENFEILLIIYLHVKRMPSEPTTKRKREALEGKSRTKLSKIGKKLT CAYRVQEGHNKLGCPRRTEFVRL" mobile_element 16885162..16885722 /note="source:CACAO_M_E43916_F9_scaffold_5 6689 7241" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16887718..16888299 /note="source:INTACT103_F9_scaffold_4-int 6570 7149" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16890752..16890875) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3770 3906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16891123..16891696 /note="source:CACAO_M_S_E38262_F319_scaffold_4 3015 3588" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16894181..16896340) /note="source:CACAO_M_E69737_F323_scaffold_9 5267 7418" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16896919..16897913 /note="source:CACAO_M_E41756_F85_scaffold_5 16188 17182" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16914654..16914698 /note="source:CACAO_M_S_E6076_F9_scaffold_2 6956 7005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16914703..16917521) /note="source:CACAO_M_E49546_F9_scaffold_7 1 2785" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16923262..16927061) /locus_tag="TCM_028629" /note="dbxref CacaoGD:Thecc1EG028629" mRNA complement(join(16923262..16924507,16924583..16925137, 16925246..16925418,16925554..16926324,16926442..16927061)) /locus_tag="TCM_028629" /product="Disease resistance protein RPS5, putative" /inference="alignment:exonerate- protein:2:ricco:29176.m000144.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037597t1" /inference="similar to AA sequence:ricco:29841.m002750" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS complement(join(16923884..16924507,16924583..16925137, 16925246..16925418,16925554..16926324,16926442..16926952)) /locus_tag="TCM_028629" /note="dbxref ricco:29841.m002750; paralog of Thecc1EG037597t1" /codon_start=1 /product="Disease resistance protein RPS5, putative" /protein_id="EOY26676.1" /db_xref="TAIR:AT1G12280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RUW1" /translation="MRRTEQVERWLTSVERFVNEINGVIEQGHQQLQDTCLGSFCPKN LPSTYKIGKRIVNRLGSARDLRHMSESFFSISDFTIVERLPGLRLLMPELLVENTVGL DSAVERVWRCNKDENTQVIRLCGIGGVGKSTLSKKLSNEFHIRNHDFDVVIWAEVSRQ EEGLYRETSRDDIREQFDLLRLGIHLQMGNQNSSKVIYTTRSMELCNAVEALETIEVK CLPPQQALKLFRMMVGENILNNDPELSELAEIIALTCGGLPLAFLTVGRAMASRRNPR EWHLAVELIHSNPSEIDGFGDRVFPLLKFSYDGLNNATAQKCFRYCYIFPKDYNVRID ELIGLWIGEGFFDGSNPRDQAEFIVGTLKLAYLLESDEYKQFIGMHDVVHDMALWLVR DQGKRKKVLVTKGVTITYEEHKKWEEANWISLYGSRNQGLVELPLDIGNVKTLQYLNL SLTSKVELPASLTNLRSLRCLLLDYTTNLKRVPKEALECLNRINKLGITIFAAPSVDN IIKSYTLRSCIRKLTFMECNGLISLRFTQELGNLERLEIFRCCSLKEFKISEWCKLGN LRQDYIGVFPLLLNLDFLAYARNLVTLTILDCESLESVTSEIIAFPGLKTISLTCLRN LESICPLPRCFPSLSEIEVSQCSLLRQLPFDLETAKFLQKIRGKTMTLKEKERFFAVI WSLWLARNDIIFGGQTWDRAQTYELVKLRVATWAKAKWPRDYNRTLDTFIEPRLGAVL ICVKKTRPKVEWTNPVDGSMKFNVDGAASGCPREAGIGGILRNSAGETKMMFSKSIGM GDSNLAEVLAIKQAFMMFFASNWNGSHSLVIESDSSNAVSWIQAPNQALWRMRKWILQ IEMLERKVKRWEIKHVKREAN" gene complement(16927699..16934079) /locus_tag="TCM_028630" /note="dbxref CacaoGD:Thecc1EG028630" mRNA complement(join(16927699..16928496,16929378..16930377, 16931472..16932584,16933721..16933805)) /locus_tag="TCM_028630" /product="UDP-Glycosyltransferase superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004730" /inference="similar to AA sequence:Phytozome:POPTR_0001s17920.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc294t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3699t3" mRNA complement(join(16927910..16928496,16929378..16929434, 16929530..16930377,16931472..16932584,16933721..16934079)) /locus_tag="TCM_028630" /product="UDP-Glycosyltransferase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004730" /inference="similar to AA sequence:ricco:29872.m000526" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3699t3" mRNA complement(join(16927930..16928496,16929378..16929437, 16929530..16930377,16931472..16932584,16933721..16933800)) /locus_tag="TCM_028630" /product="UDP-Glycosyltransferase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004730" /inference="similar to AA sequence:ricco:29872.m000526" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3699t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3699t3" CDS complement(join(16928251..16928496,16929378..16929434, 16929530..16930377,16931472..16932429)) /locus_tag="TCM_028630" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29872.m000526" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein isoform 1" /protein_id="EOY26677.1" /db_xref="TAIR:AT3G15940.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEK4" /translation="MEESVSKGPSSLRQGSFKSSLSGRSTPKSSPTFRRLNSSRTPRR EARSGAGGIQWFRSNRLVYWLLLITLWAYLGFYVQSRWAHGHNKEEFLGFSGNPRNGL IDAEQNPRRDLLADDSLVAVNNGTNKTQVYSDRKFDVILAKKRNEVSFNKKRSRRSKR AGRNLSKMRGKRKATINIENGETEGQEHEILQKNSTYGLLVGPFGSVEDRILEWSPEK RSGTCDRKGDFARLVWSRRLVLVFHELSMTGAPISMMELATELLSCGATVSAVVLSKK GGLMSELARRRIKVIEDRADLSFKTAMKADLVIAGSAVCASWIDQYIAHFPAGGSQIA WWIMENRREYFDRSKLVLHRVKMLIFLSELQSKQWLTWCQEENIKLRSQPALVPLAVN DELAFVAGIPCSLNTPSASPEKMLEKRQLLRDAVRKEMGLTDNDMLVMSLSSINTGKG QLLLLEAAGLMIDQDPLQTDSEVTKSLDIRQDQSTLTVKHHLRGLLQKSSDVDVSSTD LRLFASVNGTNAVSIDSSHRRRNMLFDSKGTQEQALKILIGSVGSKSNKMPYVKEILR FLSQHAKLSESVLWTPATTHVASLYSAADVYVMNSQGLGETFGRVTVEAMAFGLPVLG TDAGGTKEIVENNVTGLFHPMGHPGAQALAGNLRFLLKNPSARKQMGMEGRKKVERKY LKRHMYKRFVEVLTRCMRIK" CDS complement(join(16928251..16928496,16929378..16929437, 16929530..16930377,16931472..16932429)) /locus_tag="TCM_028630" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29872.m000526" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein isoform 2" /protein_id="EOY26678.1" /db_xref="TAIR:AT3G15940.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEK4" /translation="MEESVSKGPSSLRQGSFKSSLSGRSTPKSSPTFRRLNSSRTPRR EARSGAGGIQWFRSNRLVYWLLLITLWAYLGFYVQSRWAHGHNKEEFLGFSGNPRNGL IDAEQNPRRDLLADDSLVAVNNGTNKTQVYSDRKFDVILAKKRNEVSFNKKRSRRSKR AGRNLSKMRGKRKATINIENGETEGQEHEILQKNSTYGLLVGPFGSVEDRILEWSPEK RSGTCDRKGDFARLVWSRRLVLVFHELSMTGAPISMMELATELLSCGATVSAVVLSKK GGLMSELARRRIKVIEDRADLSFKTAMKADLVIAGSAVCASWIDQYIAHFPAGGSQIA WWIMENRREYFDRSKLVLHRVKMLIFLSELQSKQWLTWCQEENIKLRSQPALVPLAVN DELAFVAGIPCSLNTPSASPEKMLEKRQLLRDAVRKEMGLTDNDMLVMSLSSINTGKG QLLLLEAAGLMIDQDPLQTDSEVTKSLDIRQDQSTLTVKHHLRGLLQKSSDVDVSSTD LRLFASVNGTNAVSIDSSHRRRNMLFDSKGTQEQALKILIGSVGSKSNKMPYVKEILR FLSQHAKLSESVLWTPATTHVASLYSAADVYVMNSQQGLGETFGRVTVEAMAFGLPVL GTDAGGTKEIVENNVTGLFHPMGHPGAQALAGNLRFLLKNPSARKQMGMEGRKKVERK YLKRHMYKRFVEVLTRCMRIK" CDS complement(join(16929509..16930377,16931472..16932429)) /locus_tag="TCM_028630" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein isoform 3" /protein_id="EOY26679.1" /db_xref="Phytozome:POPTR_0001s17920.1" /db_xref="TAIR:AT3G15940.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEK4" /translation="MEESVSKGPSSLRQGSFKSSLSGRSTPKSSPTFRRLNSSRTPRR EARSGAGGIQWFRSNRLVYWLLLITLWAYLGFYVQSRWAHGHNKEEFLGFSGNPRNGL IDAEQNPRRDLLADDSLVAVNNGTNKTQVYSDRKFDVILAKKRNEVSFNKKRSRRSKR AGRNLSKMRGKRKATINIENGETEGQEHEILQKNSTYGLLVGPFGSVEDRILEWSPEK RSGTCDRKGDFARLVWSRRLVLVFHELSMTGAPISMMELATELLSCGATVSAVVLSKK GGLMSELARRRIKVIEDRADLSFKTAMKADLVIAGSAVCASWIDQYIAHFPAGGSQIA WWIMENRREYFDRSKLVLHRVKMLIFLSELQSKQWLTWCQEENIKLRSQPALVPLAVN DELAFVAGIPCSLNTPSASPEKMLEKRQLLRDAVRKEMGLTDNDMLVMSLSSINTGKG QLLLLEAAGLMIDQDPLQTDSEVTKSLDIRQDQSTLTVKHHLRGLLQKSSDVDVSSTD LRLFASVNGTNAVSIDSSHRRRNMLFDSKGTQEQALKILIGSVGSKSNKMPYVKEILR FLSQHAKLSESVLWTPATTHVASLYSAADVYVMNSQVMMSLN" mobile_element 16934603..16937852 /note="source:scaffold_2_CACTA_0239 4608 7857" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16938373..16938964 /note="source:scaffold_2_CACTA_0239 8789 9349" /mobile_element_type="transposon:TIR/CACTA" gene complement(16940671..16947915) /locus_tag="TCM_028633" /note="dbxref CacaoGD:Thecc1EG028633" mRNA complement(join(16940671..16941033,16941124..16941301, 16941795..16941875,16941958..16942028,16942143..16942197, 16942300..16942355,16943158..16943280,16943667..16943781, 16944242..16945080,16945180..16945385,16945491..16945593, 16946857..16947018)) /locus_tag="TCM_028633" /product="CASC3/Barentsz eIF4AIII binding, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:29872.m000527" /inference="similar to AA sequence:ricco:29872.m000527" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc544t11_C2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15934t3; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc486t13" mRNA complement(join(16940671..16941033,16941124..16941301, 16941795..16941875,16941958..16942197,16942300..16942355, 16943158..16943280,16943667..16943781,16944242..16945080, 16945180..16945385,16945491..16945593,16946857..16947018)) /locus_tag="TCM_028633" /product="CASC3/Barentsz eIF4AIII binding, putative isoform 6" /inference="alignment:exonerate- protein:2:ricco:29872.m000527" /inference="similar to AA sequence:ricco:29872.m000527" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc544t4_C2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15934t3; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc486t13" mRNA complement(join(16940671..16941033,16941124..16941301, 16941795..16941875,16941958..16942028,16942143..16942355, 16943158..16943280,16943667..16943781,16944242..16945080, 16945180..16945385,16945491..16945593,16946857..16947018)) /locus_tag="TCM_028633" /product="CASC3/Barentsz eIF4AIII binding, putative isoform 7" /inference="alignment:exonerate- protein:2:ricco:29872.m000527" /inference="similar to AA sequence:ricco:29872.m000527" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc544t3_C2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15934t3; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc486t13" mRNA complement(join(16940725..16941122,16941213..16941301, 16941795..16941875,16941958..16942028,16942143..16942197, 16942300..16942355,16943158..16943280,16943667..16943781, 16944242..16945080,16945180..16945385,16945491..16945593, 16946857..16947915)) /locus_tag="TCM_028633" /product="CASC3/Barentsz eIF4AIII binding, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29872.m000527" /inference="similar to AA sequence:ricco:29872.m000527" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15934t3" mRNA complement(join(16940763..16941122,16941218..16941301, 16941795..16941875,16941957..16942028,16942143..16942197, 16942300..16942355,16943158..16943280,16943667..16943781, 16944242..16945080,16945180..16945385,16945491..16945593, 16946857..16947803)) /locus_tag="TCM_028633" /product="CASC3/Barentsz eIF4AIII binding, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29872.m000527" /inference="similar to AA sequence:ricco:29872.m000527" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3740t3; alternateUTRof:Thecc1EG028633t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15934t3; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc486t13" mRNA complement(join(16940763..16941122,16941218..16941301, 16941795..16941875,16941958..16942032,16942143..16942197, 16942300..16942355,16943158..16943280,16943667..16943781, 16944242..16945080,16945180..16945385,16945491..16945593, 16946857..16947803)) /locus_tag="TCM_028633" /product="CASC3/Barentsz eIF4AIII binding, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29872.m000527" /inference="similar to AA sequence:ricco:29872.m000527" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3740t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15934t3; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc486t13" mRNA complement(join(16940763..16941122,16941218..16941301, 16941795..16942028,16942143..16942197,16942300..16942357, 16943158..16943280,16943667..16943781,16944242..16945080, 16945180..16945385,16945491..16945593,16946857..16947803)) /locus_tag="TCM_028633" /product="CASC3/Barentsz eIF4AIII binding, putative isoform 5" /inference="alignment:exonerate- protein:2:ricco:29872.m000527" /inference="similar to AA sequence:ricco:29872.m000527" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3740t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15934t3; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc486t13" CDS complement(join(16942001..16942028,16942143..16942197, 16942300..16942355,16943158..16943280,16943667..16943781, 16944242..16945080,16945180..16945385,16945491..16945593, 16946857..16947467)) /locus_tag="TCM_028633" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29872.m000527" /codon_start=1 /product="CASC3/Barentsz eIF4AIII binding, putative isoform 1" /protein_id="EOY26680.1" /db_xref="TAIR:AT1G80000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEK3" /translation="MATAGEEDVEYESDPEEVKRSLAMRRREAASDDEEGERGEDNNT KARMDRRAVIHSEESDGQGGAADYDDDDEELDLEEDEEEEGAYDEEEEEEEEIDEEET EEVGKGEMKGNVERTGEDVEEAVVGDGSRNVEDGLEINNNIINGNNNNNYNNNNNNNN NNHLGEEDEDEEEKKENEPFAVPTAGAFYMHDDRFRDNAGGRHRRTHGARKLWESKDD RKWGHDKFEEMTLQEKHYEGGRRSSRGRYRARSKNRGPDHGYPRGSRSKAFEKNNNQN QAPKGVRGRGPRRYEPTVKNSSQAPPTQNKLSGKPLEKTSQANSSRALTPATNADTTS VPARKHVFASSLSSASPPFYPSGSSNKDITLTPKKDVQTGSVSRNLRPSVTDDNSSVS QSNSLRGKNVLDSLSMAKLYIDDSSTSASGKPLTNLQMLPSGSSLGNTSQPSQSRVQG RGMAIPGQKAYQPAPHQSQVNRVSPPTQVNAGQRSPVQGRVQSSVQSAAQQLSQHPGI GSQASSPPKTAMSVSSYESGEVESSETSKSKGALVSKGKSSVQGASRGSFMYGGAQIM GATGSMAVSHGDQNFPAFLPVMQFGGQHPGGLSVPAVGMAFPGYVAQPQLGMGNSEMT WLPVLTGAAGALGATYCSPYIAVDGSYHARPSGQASSTGSSSKENTSNKPNNEWKPSQ RPELVSDEFGQRQNNPNKPRRYSEMSFSK" CDS complement(join(16942001..16942028,16942143..16942197, 16942300..16942355,16943158..16943280,16943667..16943781, 16944242..16945080,16945180..16945385,16945491..16945593, 16946857..16947467)) /locus_tag="TCM_028633" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29872.m000527" /codon_start=1 /product="CASC3/Barentsz eIF4AIII binding, putative isoform 1" /protein_id="EOY26681.1" /db_xref="TAIR:AT1G80000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEK3" /translation="MATAGEEDVEYESDPEEVKRSLAMRRREAASDDEEGERGEDNNT KARMDRRAVIHSEESDGQGGAADYDDDDEELDLEEDEEEEGAYDEEEEEEEEIDEEET EEVGKGEMKGNVERTGEDVEEAVVGDGSRNVEDGLEINNNIINGNNNNNYNNNNNNNN NNHLGEEDEDEEEKKENEPFAVPTAGAFYMHDDRFRDNAGGRHRRTHGARKLWESKDD RKWGHDKFEEMTLQEKHYEGGRRSSRGRYRARSKNRGPDHGYPRGSRSKAFEKNNNQN QAPKGVRGRGPRRYEPTVKNSSQAPPTQNKLSGKPLEKTSQANSSRALTPATNADTTS VPARKHVFASSLSSASPPFYPSGSSNKDITLTPKKDVQTGSVSRNLRPSVTDDNSSVS QSNSLRGKNVLDSLSMAKLYIDDSSTSASGKPLTNLQMLPSGSSLGNTSQPSQSRVQG RGMAIPGQKAYQPAPHQSQVNRVSPPTQVNAGQRSPVQGRVQSSVQSAAQQLSQHPGI GSQASSPPKTAMSVSSYESGEVESSETSKSKGALVSKGKSSVQGASRGSFMYGGAQIM GATGSMAVSHGDQNFPAFLPVMQFGGQHPGGLSVPAVGMAFPGYVAQPQLGMGNSEMT WLPVLTGAAGALGATYCSPYIAVDGSYHARPSGQASSTGSSSKENTSNKPNNEWKPSQ RPELVSDEFGQRQNNPNKPRRYSEMSFSK" CDS complement(join(16942001..16942028,16942143..16942197, 16942300..16942355,16943158..16943280,16943667..16943781, 16944242..16945080,16945180..16945385,16945491..16945593, 16946857..16946900)) /locus_tag="TCM_028633" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29872.m000527" /codon_start=1 /product="CASC3/Barentsz eIF4AIII binding, putative isoform 4" /protein_id="EOY26683.1" /db_xref="TAIR:AT1G80000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEK3" /translation="MHDDRFRDNAGGRHRRTHGARKLWESKDDRKWGHDKFEEMTLQE KHYEGGRRSSRGRYRARSKNRGPDHGYPRGSRSKAFEKNNNQNQAPKGVRGRGPRRYE PTVKNSSQAPPTQNKLSGKPLEKTSQANSSRALTPATNADTTSVPARKHVFASSLSSA SPPFYPSGSSNKDITLTPKKDVQTGSVSRNLRPSVTDDNSSVSQSNSLRGKNVLDSLS MAKLYIDDSSTSASGKPLTNLQMLPSGSSLGNTSQPSQSRVQGRGMAIPGQKAYQPAP HQSQVNRVSPPTQVNAGQRSPVQGRVQSSVQSAAQQLSQHPGIGSQASSPPKTAMSVS SYESGEVESSETSKSKGALVSKGKSSVQGASRGSFMYGGAQIMGATGSMAVSHGDQNF PAFLPVMQFGGQHPGGLSVPAVGMAFPGYVAQPQLGMGNSEMTWLPVLTGAAGALGAT YCSPYIAVDGSYHARPSGQASSTGSSSKENTSNKPNNEWKPSQRPELVSDEFGQRQNN PNKPRRYSEMSFSK" CDS complement(join(16942020..16942032,16942143..16942197, 16942300..16942355,16943158..16943280,16943667..16943781, 16944242..16945080,16945180..16945385,16945491..16945593, 16946857..16947467)) /locus_tag="TCM_028633" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29872.m000527" /codon_start=1 /product="CASC3/Barentsz eIF4AIII binding, putative isoform 3" /protein_id="EOY26682.1" /db_xref="TAIR:AT1G80000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEK3" /translation="MATAGEEDVEYESDPEEVKRSLAMRRREAASDDEEGERGEDNNT KARMDRRAVIHSEESDGQGGAADYDDDDEELDLEEDEEEEGAYDEEEEEEEEIDEEET EEVGKGEMKGNVERTGEDVEEAVVGDGSRNVEDGLEINNNIINGNNNNNYNNNNNNNN NNHLGEEDEDEEEKKENEPFAVPTAGAFYMHDDRFRDNAGGRHRRTHGARKLWESKDD RKWGHDKFEEMTLQEKHYEGGRRSSRGRYRARSKNRGPDHGYPRGSRSKAFEKNNNQN QAPKGVRGRGPRRYEPTVKNSSQAPPTQNKLSGKPLEKTSQANSSRALTPATNADTTS VPARKHVFASSLSSASPPFYPSGSSNKDITLTPKKDVQTGSVSRNLRPSVTDDNSSVS QSNSLRGKNVLDSLSMAKLYIDDSSTSASGKPLTNLQMLPSGSSLGNTSQPSQSRVQG RGMAIPGQKAYQPAPHQSQVNRVSPPTQVNAGQRSPVQGRVQSSVQSAAQQLSQHPGI GSQASSPPKTAMSVSSYESGEVESSETSKSKGALVSKGKSSVQGASRGSFMYGGAQIM GATGSMAVSHGDQNFPAFLPVMQFGGQHPGGLSVPAVGMAFPGYVAQPQLGMGNSEMT WLPVLTGAAGALGATYCSPYIAVDGSYHARPSGQASSTGSSSKENTSNKPNNEWKPSQ RPELVSDEFGQRQNNPNKPRRQIF" CDS complement(join(16942112..16942197,16942300..16942355, 16943158..16943280,16943667..16943781,16944242..16945080, 16945180..16945385,16945491..16945593,16946857..16946900)) /locus_tag="TCM_028633" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29872.m000527" /codon_start=1 /product="CASC3/Barentsz eIF4AIII binding, putative isoform 6" /protein_id="EOY26685.1" /db_xref="TAIR:AT1G80000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEK3" /translation="MHDDRFRDNAGGRHRRTHGARKLWESKDDRKWGHDKFEEMTLQE KHYEGGRRSSRGRYRARSKNRGPDHGYPRGSRSKAFEKNNNQNQAPKGVRGRGPRRYE PTVKNSSQAPPTQNKLSGKPLEKTSQANSSRALTPATNADTTSVPARKHVFASSLSSA SPPFYPSGSSNKDITLTPKKDVQTGSVSRNLRPSVTDDNSSVSQSNSLRGKNVLDSLS MAKLYIDDSSTSASGKPLTNLQMLPSGSSLGNTSQPSQSRVQGRGMAIPGQKAYQPAP HQSQVNRVSPPTQVNAGQRSPVQGRVQSSVQSAAQQLSQHPGIGSQASSPPKTAMSVS SYESGEVESSETSKSKGALVSKGKSSVQGASRGSFMYGGAQIMGATGSMAVSHGDQNF PAFLPVMQFGGQHPGGLSVPAVGMAFPGYVAQPQLGMGNSEMTWLPVLTGAAGALGAT YCSPYIAVDGSYHARPSGQASSTGSSSKENTSNKPNNEWKPSQRPELVSDEFGQRQNN PNKPRRQVEIFKLFL" CDS complement(join(16942189..16942197,16942300..16942357, 16943158..16943280,16943667..16943781,16944242..16945080, 16945180..16945385,16945491..16945593,16946857..16947467)) /locus_tag="TCM_028633" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29872.m000527" /codon_start=1 /product="CASC3/Barentsz eIF4AIII binding, putative isoform 5" /protein_id="EOY26684.1" /db_xref="TAIR:AT1G80000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEK3" /translation="MATAGEEDVEYESDPEEVKRSLAMRRREAASDDEEGERGEDNNT KARMDRRAVIHSEESDGQGGAADYDDDDEELDLEEDEEEEGAYDEEEEEEEEIDEEET EEVGKGEMKGNVERTGEDVEEAVVGDGSRNVEDGLEINNNIINGNNNNNYNNNNNNNN NNHLGEEDEDEEEKKENEPFAVPTAGAFYMHDDRFRDNAGGRHRRTHGARKLWESKDD RKWGHDKFEEMTLQEKHYEGGRRSSRGRYRARSKNRGPDHGYPRGSRSKAFEKNNNQN QAPKGVRGRGPRRYEPTVKNSSQAPPTQNKLSGKPLEKTSQANSSRALTPATNADTTS VPARKHVFASSLSSASPPFYPSGSSNKDITLTPKKDVQTGSVSRNLRPSVTDDNSSVS QSNSLRGKNVLDSLSMAKLYIDDSSTSASGKPLTNLQMLPSGSSLGNTSQPSQSRVQG RGMAIPGQKAYQPAPHQSQVNRVSPPTQVNAGQRSPVQGRVQSSVQSAAQQLSQHPGI GSQASSPPKTAMSVSSYESGEVESSETSKSKGALVSKGKSSVQGASRGSFMYGGAQIM GATGSMAVSHGDQNFPAFLPVMQFGGQHPGGLSVPAVGMAFPGYVAQPQLGMGNSEMT WLPVLTGAAGALGATYCSPYIAVDGSYHARPSGQASSTGSSRAKKILLTNQIMNGSLL KDLSL" CDS complement(join(16942289..16942355,16943158..16943280, 16943667..16943781,16944242..16945080,16945180..16945385, 16945491..16945593,16946857..16946900)) /locus_tag="TCM_028633" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:29872.m000527" /codon_start=1 /product="CASC3/Barentsz eIF4AIII binding, putative isoform 7" /protein_id="EOY26686.1" /db_xref="TAIR:AT1G80000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEK3" /translation="MHDDRFRDNAGGRHRRTHGARKLWESKDDRKWGHDKFEEMTLQE KHYEGGRRSSRGRYRARSKNRGPDHGYPRGSRSKAFEKNNNQNQAPKGVRGRGPRRYE PTVKNSSQAPPTQNKLSGKPLEKTSQANSSRALTPATNADTTSVPARKHVFASSLSSA SPPFYPSGSSNKDITLTPKKDVQTGSVSRNLRPSVTDDNSSVSQSNSLRGKNVLDSLS MAKLYIDDSSTSASGKPLTNLQMLPSGSSLGNTSQPSQSRVQGRGMAIPGQKAYQPAP HQSQVNRVSPPTQVNAGQRSPVQGRVQSSVQSAAQQLSQHPGIGSQASSPPKTAMSVS SYESGEVESSETSKSKGALVSKGKSSVQGASRGSFMYGGAQIMGATGSMAVSHGDQNF PAFLPVMQFGGQHPGGLSVPAVGMAFPGYVAQPQLGMGNSEMTWLPVLTGAAGALGAT YCSPYIAVDGSYHARPSGQASSTGSSSKENTSNKPNNEWKPSQRPGKQ" mobile_element complement(16950205..16951498) /note="source:INTACT160_F4_scaffold_7-int 13374 14695" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16952095..16953851) /note="source:CACAO_M_E43344_F106_scaffold_5 313 2069" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16953846..16957115 /note="source:CACAO_M_S_E15657_F60_scaffold_2 400 3660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16957115..16958940) /note="source:INTACT160_F4_scaffold_7-int 13136 14932" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16960212..16962292 /note="source:CACAO_M_E43672_F60_scaffold_5 14589 16669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16962293..16965201 /note="source:CACAO_M_E48993_F230_scaffold_6 1 2909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16965202..16968646 /note="source:CACAO_M_S_E32578_F60_scaffold_4 5731 9163" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16973201..16979731 /locus_tag="TCM_028636" /note="dbxref CacaoGD:Thecc1EG028636" mRNA join(16973201..16973374,16973557..16973696, 16973877..16973938,16974044..16974131,16974232..16974293, 16974365..16974461,16974580..16975035,16975585..16976316, 16976508..16976588,16976764..16976868,16976955..16977038, 16977926..16978097,16978194..16978239,16978759..16979731) /locus_tag="TCM_028636" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT4G32630.1" /inference="similar to AA sequence:Phytozome:GSVIVT01017129001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3662t1" CDS join(16973598..16973696,16973877..16973938, 16974044..16974131,16974232..16974293,16974365..16974461, 16974580..16975035,16975585..16976316,16976508..16976588, 16976764..16976868,16976955..16977038,16977926..16978097, 16978194..16978239,16978759..16978894) /locus_tag="TCM_028636" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26687.1" /db_xref="Phytozome:GSVIVT01017129001" /translation="MKGRITEDEKNEKIIRGLLKLPANRRCVNCNGLGPQYVCTNFST FVCATCGGIHREFTHRVKSVSMAKFTSEEVDGLQGGGNESAKEVYFKEWGSRRQSVPD NSDIEGLRKFIKHVYVDRRYTGEKSVDRPPTPKKVDREDSCTHRSGLLSLPYLDIYER RSIGRSRTSERSDERDSRNIYEERRNPGHGKESQKHGDFRRISSNFEVVDDRFRDHTY ETSKSEANWFSNRAHNLDRKPSIQHKALDSSRPREVRPLRDILDRIPTMRLSQDLKGD GGRLSNGSVHVEKTASSIRTRQDDRNSMEPKRPNSMGHERKNLGSPVKIKSDPEPALQ MQQSPKYTSQYIPKPTSSPNSNNLVRIDCHTEGNQSKAASNVKSLDSVVPAAKAMGNV SAKPSTGGVLNAVIHHLPRTPSSIGVSPAAPLSNVLTSSPTSSSPSPKAVLVSAASPL TTSDGGSSSEANHVKQGQGIPQPQCSIFPDTAIQSTSYVPSGSPNLQSSQFVSQQIPQ ACSEVVFESLPSVQTLSGKKEFTEGHGTGPAVISHSGQSEQKSSGRKELPQHLFAATY SPAPVLSPGWQSVQAQGMGYCLQNSSSVQVPTVYQPAKSANTFDLDNGTHLLQSPMLS SMASWHGAQPNVLAPKSVMQSTSHVSPSAQWMPAQSSPDGGVPFQPFSSTAGMPLSSY MRQQVPNKLSPPGCQGVEVLGNNLAFFNTLNTNQQPGGIFSIPAIHGSSSVGGNPFA" mobile_element complement(16981071..16982796) /note="source:CACAO_M_S_E4787_F60_scaffold_1 4 1730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16982813..16983674) /note="source:CACAO_M_E43672_F60_scaffold_5 14744 15604" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16983680..16985367) /note="source:CACAO_M_S_E4787_F60_scaffold_1 1 1706" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16987015..16996026 /note="source:INTACT44_F119_scaffold_6-int 1 9012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17003917..17011818 /note="source:INTACT528_F17_scaffold_6-int 1 7902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17016961..17019593 /note="source:CACAO_M_S_E84349_F231_scaffold_6 1 2633" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17019627..17025474 /locus_tag="TCM_028642" /note="dbxref CacaoGD:Thecc1EG028642" mRNA join(17019627..17019633,17023245..17023787, 17025289..17025474) /locus_tag="TCM_028642" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage" CDS join(17023613..17023787,17025289..17025383) /locus_tag="TCM_028642" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26688.1" /translation="MHLCSCGGGKSQPAKQASKHSWPSSATVCPAKKSSIITIIIIAF GLILFSPSMPQILTILQTAVNIVQNFGPRLEYVPTLKFGTFELSP" gene complement(17025478..17035732) /locus_tag="TCM_028643" /note="dbxref CacaoGD:Thecc1EG028643" mRNA complement(join(17025478..17025722,17025820..17026288, 17035673..17035732)) /locus_tag="TCM_028643" /product="To encode a PR protein, Belongs to the plant thionin family with the following members:, putative" /inference="alignment:exonerate- protein:2:ricco:29872.m000539" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027831t1" /inference="similar to AA sequence:ricco:29872.m000539" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3651t1" CDS complement(join(17025661..17025722,17025820..17026213)) /locus_tag="TCM_028643" /note="dbxref ricco:29872.m000539; paralog of Thecc1EG027831t1" /codon_start=1 /product="To encode a PR protein, Belongs to the plant thionin family with the following members:, putative" /protein_id="EOY26689.1" /translation="MDLPLRVYINLSWRTERADLLKFQLYLSSPLQSKGKRRKMEGRG VGSVMMVCLVLGLLVGQSTASFQKCYAGCFLLCVFIPPNPVFSCAIKCLNECIIPSST LESGKDTQYFCKLGCATSLCTDLSSKENPGEQKVGSCVDSCSETCAKKN" mobile_element 17027087..17030495 /note="source:CACAO_M_S_E50888_F253_scaffold_4 1 3429" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17029651..17030987) /note="source:CACAO_M_E58957_F253_scaffold_9 1932 3293" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17034019..17034067 /note="source:CACAO_M_E11054_F12_scaffold_2 8782 8830" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17044564..17044980) /note="source:CACAO_M_S_E33139_F368_scaffold_4 1819 2236" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17044981..17047666 /note="source:CACAO_M_E2953_F85_scaffold_1 1 2686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17047666..17048058) /note="source:scaffold_4_CACTA_0500 8527 8919" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17049330..17049792 /note="source:CACAO_M_E4243_F82_scaffold_2 2651 3113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17069563..17069948) /note="source:CACAO_M_E5569_F322_scaffold_2 2049 2381" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17070273..17071942 /note="source:CACAO_M_S_E15347_F33_scaffold_2 6002 7668" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17072610..17072803 /note="source:CACAO_M_S_E15347_F33_scaffold_2 8336 8531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17072785..17073374 /note="source:CACAO_M_S_E14676_F85_scaffold_2 2742 3330" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17073376..17074470) /note="source:CACAO_M_S_E33139_F368_scaffold_4 10907 12020" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17075186..17075324) /note="source:INTACT649F_F368_scaffold_5-int 14336 14473" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17075587..17075755) /note="source:CACAO_M_S_E33139_F368_scaffold_4 10131 10305" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17081436..17083781 /note="source:CACAO_M_E42395_F3_scaffold_5 1 2376" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17082969..17084734) /note="source:INTACT319_F3_scaffold_1-int 7569 9370" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17084735..17087220) /note="source:CACAO_M_E42395_F3_scaffold_5 15055 17484" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17086349..17087346 /note="source:CACAO_M_S_E85177_F5_scaffold_7 19265 20249" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17087344..17089379 /note="source:CACAO_M_E12058_F3_scaffold_2 3231 5282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17089913..17090878 /note="source:INTACT649F_F368_scaffold_5-int 15162 16130" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17090885..17092156) /note="source:CACAO_M_E5899_F5_scaffold_2 24398 25655" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17092161..17093768) /note="source:CACAO_M_E5899_F5_scaffold_2 22688 24287" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17093172..17093838 /note="source:CACAO_M_E42641_F14_scaffold_5 1772 2439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17093839..17094387) /note="source:scaffold_4_CACTA_0498 3125 3673" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17096702..17097544) /note="source:CACAO_M_E11662_F12_scaffold_2 14470 15312" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17110376..17112250) /note="source:CACAO_M_E52427_F42_scaffold_7 1 1874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17112250..17113838) /note="source:INTACT118_F5_scaffold_9-int 15380 16197" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17113838..17114370 /note="source:CACAO_M_E23493_F73_scaffold_4 4725 5257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17114471..17114624 /note="source:CACAO_M_E44105_F73_scaffold_5 559 712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17116679..17118805 /note="source:INTACT88_F12_scaffold_4-int 2083 4203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17117208..17125191) /note="source:CACAO_M_E5899_F5_scaffold_2 14291 18822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17125192..17126158 /note="source:scaffold_2_CACTA_0276 8973 9949" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17126157..17128498 /note="source:CACAO_M_E84368_F4_scaffold_10 1607 3994" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17128471..17128574) /note="source:CACAO_M_E50108_F4_scaffold_7 4389 4491" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17128489..17128868) /note="source:CACAO_M_S_E1495_F60_scaffold_1 10997 11380" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17128872..17131284) /note="source:CACAO_M_E14763_F42_scaffold_3 686 3105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17131385..17132050 /note="source:CACAO_M_S_E2040_F42_scaffold_1 2453 3117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17133448..17134443 /note="source:scaffold_2_CACTA_0276 5427 6402" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17133649..17136535) /note="source:INTACT10_F4_scaffold_6-int 1 2930" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17140092..17140742) /note="source:CACAO_on_E732_scaffold_9 3317 3926" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(17140843..17140965) /note="source:CACAO_on_E732_scaffold_9 3190 3312" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 17140966..17141333 /note="source:CACAO_M_E42514_F40_scaffold_5 10291 10676" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17144731..17145588) /note="source:CACAO_M_E22484_F328_scaffold_3 4862 5824" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17145589..17145752 /note="source:CACAO_on_E680_scaffold_9 3469 3631" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(17145729..17147385) /note="source:CACAO_on_E732_scaffold_9 1534 3198" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(17145753..17145787) /note="source:CACAO_M_E22484_F328_scaffold_3 4821 4861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17147487..17148624) /note="source:CACAO_on_E732_scaffold_9 357 1493" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 17148619..17149203 /note="source:CACAO_M_E84908_F12_scaffold_10 6142 6725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17149304..17149993 /note="source:CACAO_M_E84908_F12_scaffold_10 7492 8181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17150126..17150895 /note="source:INTACT453_F4_scaffold_9-int 7258 8026" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17151980..17154614 /note="source:CACAO_M_E33441_F85_scaffold_4 5088 7477" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17154715..17157281 /note="source:CACAO_M_E22895_F323_scaffold_3 884 3443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17161797..17162249) /note="source:INTACT567_F258_scaffold_9-int 68 474" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17165637..17166946 /note="source:CACAO_M_E45308_F72_scaffold_6 1 1313" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17166893..17166955) /note="source:CACAO_M_E84368_F4_scaffold_10 14827 14886" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17166947..17167578) /note="source:CACAO_M_E50311_F328_scaffold_7 5810 6457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17167820..17168124) /note="source:CACAO_M_S_E122077_F328_scaffold_10 5573 5883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17168206..17168804) /note="source:CACAO_M_S_E122077_F328_scaffold_10 5010 5579" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17168805..17172141) /note="source:CACAO_M_S_E64699_F85_scaffold_5 1 3335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17172145..17174359) /note="source:CACAO_M_S_E122077_F328_scaffold_10 6459 8461" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17174387..17174770) /note="source:CACAO_M_E12044_F76_scaffold_2 21102 21432" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17175799..17188717) /note="source:INTACT1427F_F390_scaffold_9-int 3110 17765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17189617..17190285 /note="source:INTACT666_F293_scaffold_9-int 1409 2038" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17189713..17191143) /note="source:INTACT1427F_F390_scaffold_9-int 14604 16007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17192767..17193007 /note="source:INTACT135F_F90_scaffold_2-int 13752 13996" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17193011..17194225 /note="source:CACAO_M_S_E118737_F207_scaffold_9 3853 5070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17193450..17194480) /note="source:CACAO_M_S_E14649_F328_scaffold_2 4767 5823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17194218..17196184 /note="source:CACAO_M_E49492_F328_scaffold_7 5357 7263" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17195824..17196480) /note="source:CACAO_M_E50311_F328_scaffold_7 5810 6458" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17196727..17197029) /note="source:CACAO_M_E50311_F328_scaffold_7 5573 5883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17197110..17197188) /note="source:CACAO_M_E50311_F328_scaffold_7 5500 5579" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17197174..17197242 /note="source:CACAO_M_E71369_F328_scaffold_10 3140 3209" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17197245..17198877) /note="source:CACAO_M_E34206_F273_scaffold_4 1 1655" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17200544..17202308 /note="source:scaffold_2_CACTA_0276 6400 8191" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17206708..17228762 /note="source:CACAO_M_S_E84376_F22_scaffold_6 1 22055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17229600..17229665) /note="source:CACAO_M_S_E122136_F76_scaffold_10 18217 18278" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17230096..17234092) /locus_tag="TCM_028656" /note="dbxref CacaoGD:Thecc1EG028656" mRNA complement(join(17230096..17230489,17233678..17233795, 17233878..17234092)) /locus_tag="TCM_028656" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene21698" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(17230188..17230489,17233678..17233795, 17233878..17233967)) /locus_tag="TCM_028656" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26690.1" /translation="MVKKHFIILVGKVNEVNVNYEICNVYALNEIFNPVQIGDKHSRV KDANFTLDFLNFIEEAGLVDLPMLEVSRAAWLAARWGFRNLDLYVSSVADWFKLLCDK MVKENLEEVVSVMWAFWKSRNAMLFKQQSPEPLTIAKLGINVVSQCRSANCLAGNTEA ESVSIMVPS" mobile_element complement(17235295..17235712) /note="source:scaffold_8_CACTA_0859 14226 15826" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17235713..17238684 /note="source:CACAO_M_E49027_F15_scaffold_6 1 2972" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17238685..17239074) /note="source:scaffold_8_CACTA_0859 12721 14225" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17239059..17240456 /note="source:CACAO_M_E5899_F5_scaffold_2 19642 21161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17240461..17242155 /note="source:CACAO_M_E5899_F5_scaffold_2 21014 22691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17242155..17242983 /note="source:CACAO_M_S_E5285_F300_scaffold_1 18755 19591" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17243901..17247610) /note="source:INTACT167_F5_scaffold_2-int 11067 14951" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17249941..17259931) /locus_tag="TCM_028657" /note="dbxref CacaoGD:Thecc1EG028657" mRNA complement(join(17249941..17250832,17251025..17251190, 17251620..17251699,17259860..17259931)) /locus_tag="TCM_028657" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(17250748..17250832,17251025..17251190, 17251620..17251683)) /locus_tag="TCM_028657" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26691.1" /translation="MTLFLHQLLCVVRDLFSAYCSDKWAIGLRREGRPVTNQFCHPIG LHLLCRSPAFVVSFHSAFGIRCFCRHVVSFELISRKPRLLGLCTGHGPLSLSRDKNEY GA" mobile_element 17255687..17258634 /note="source:CACAO_M_E44652_F230_scaffold_6 1 2933" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17260256..17260334 /note="source:INTACT85_F9_scaffold_4-int 12216 12299" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17261315..17264088 /note="source:CACAO_M_E49037_F305_scaffold_6 1 2774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17264420..17264496) /note="source:CACAO_M_E58324_F9_scaffold_9 1436 1519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17264502..17267802 /note="source:CACAO_M_S_E84395_F207_scaffold_6 1 3301" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17267804..17269294) /note="source:CACAO_M_E639_F17_scaffold_1 1 1484" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17274676..17277938 /note="source:INTACT566_F257_scaffold_7-int 2079 5351" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17281875..17282092 /note="source:INTACT746_F84_scaffold_2-int 542 769" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17289752..17290977) /note="source:CACAO_M_S_E15173_F4_scaffold_2 637 1864" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17290977..17291539 /note="source:INTACT33_F7_scaffold_5-int 3608 4170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17291896..17293913) /note="source:CACAO_M_S_E53523_F44_scaffold_5 1 2034" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17294209..17294591) /note="source:CACAO_M_S_E15173_F4_scaffold_2 11355 11733" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17294561..17294594) /note="source:CACAO_M_E58684_F78_scaffold_9 2855 2882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17294595..17297601 /note="source:CACAO_M_E49040_F277_scaffold_6 1 3007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17297602..17299924 /note="source:CACAO_M_E14537_F4_scaffold_3 2852 5148" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17299899..17301019) /note="source:INTACT180_F13_scaffold_3-int 1 1225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17301021..17301271 /note="source:CACAO_M_E14537_F4_scaffold_3 5140 5386" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17301681..17302522) /note="source:CACAO_M_S_E15173_F4_scaffold_2 5017 5856" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17302272..17303523 /note="source:CACAO_M_E14537_F4_scaffold_3 8590 9866" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17303523..17304602 /note="source:CACAO_M_E69283_F22_scaffold_9 12031 13103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17304603..17305568) /note="source:CACAO_M_S_E15173_F4_scaffold_2 12552 13531" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17314283..17314485 /note="source:INTACT598_F89_scaffold_2-int 12791 12991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17314465..17314586 /note="source:INTACT598_F89_scaffold_2-int 12873 12990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17314582..17315630) /note="source:INTACT598_F89_scaffold_2-int 9611 10705" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17316057..17319605 /locus_tag="TCM_028663" /note="dbxref CacaoGD:Thecc1EG028663" mRNA join(17316057..17316404,17318797..17319018, 17319115..17319605) /locus_tag="TCM_028663" /product="To encode a PR protein, Belongs to the plant thionin family with the following members:, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G12663.1" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc6326t1" CDS join(17316125..17316404,17318797..17319018, 17319115..17319176) /locus_tag="TCM_028663" /codon_start=1 /product="To encode a PR protein, Belongs to the plant thionin family with the following members:, putative" /protein_id="EOY26692.1" /translation="MEKRGVSAVLMVCLVLGTLVGQSTAQGTILCYAACFIPCMADST TTTFYCAAKCLKDCILPKSTVGGIKDTQYFCKLGCATALCTNISTKEDPGQSTAQGTN VLCYAACFIPCMADPNTTTFYCTIKCLKNCILPKSTVGGIKDTQYFCKLGCATALCTN ISTKEDPGEKKVGSCVDACSATCAKKN" mobile_element 17321475..17324077 /note="source:scaffold_6_CACTA_0713 1 2603" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17324178..17324730 /note="source:scaffold_6_CACTA_0713 2604 3156" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17325008..17325347 /note="source:scaffold_6_CACTA_0713 3157 3496" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17325448..17327637 /note="source:scaffold_6_CACTA_0713 3497 5686" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17327738..17330404 /note="source:scaffold_6_CACTA_0713 5687 8353" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17333823..17334929 /note="source:scaffold_6_CACTA_0713 8354 9460" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17337727..17338403) /note="source:scaffold_9_CACTA_0931 15827 16487" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17340562..17343897 /note="source:CACAO_M_E49050_F85_scaffold_6 1 3336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17347610..17347749 /note="source:CACAO_M_E49195_F17_scaffold_6 3442 3568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17347750..17349257 /note="source:CACAO_M_E49195_F17_scaffold_6 1 1521" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17352436..17352477) /note="source:INTACT208_F15_scaffold_1-int 2756 2795" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17352478..17362683 /note="source:CACAO_M_S_E84415_F15_scaffold_6 1 10206" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17364454..17364535) /note="source:scaffold_3_CACTA_0382 1857 1937" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17364463..17364540) /note="source:CACAO_M_E5899_F5_scaffold_2 20732 20806" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17364476..17364558 /note="source:scaffold_3_CACTA_0382 1861 1939" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17366413..17367784 /note="source:INTACT85_F9_scaffold_4-int 1 1445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17369860..17370844 /note="source:scaffold_8_CACTA_0859 16514 17493" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17371394..17371419) /note="source:CACAO_M_S_E100312_F82_scaffold_9 6573 6602" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17371420..17374712 /note="source:CACAO_M_E49056_F82_scaffold_6 1 3293" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17375063..17380697) /note="source:CACAO_Mutator_E1018_scaffold_5 618 4335" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17380677..17380861) /note="source:CACAO_Mutator_E1018_scaffold_5 609 793" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17380847..17380966) /note="source:CACAO_Mutator_E1320_scaffold_6 2435 2554" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17381015..17383228) /note="source:CACAO_Mutator_E1320_scaffold_6 263 2452" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17381475..17383727) /note="source:scaffold_8_CACTA_0867 7811 10079" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17383709..17384102) /note="source:CACAO_Mutator_E592_scaffold_3 10713 11104" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17384094..17385245) /note="source:CACAO_Mutator_E592_scaffold_3 9060 10203" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17385252..17385960) /note="source:CACAO_Mutator_E1320_scaffold_6 53 639" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17385963..17387884) /note="source:CACAO_PIF_E62_scaffold_2 10217 12158" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(17386426..17388244) /note="source:scaffold_8_CACTA_0867 3544 5392" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17387459..17390244) /note="source:CACAO_Mutator_E592_scaffold_3 4840 7637" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17390096..17390871) /note="source:scaffold_8_CACTA_0867 413 1193" /mobile_element_type="transposon:TIR/CACTA" gene complement(17390758..17393666) /locus_tag="TCM_028671" /note="dbxref CacaoGD:Thecc1EG028671" mRNA complement(join(17390758..17391836,17391944..17392000, 17393173..17393666)) /locus_tag="TCM_028671" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage" CDS complement(join(17391543..17391836,17391944..17392000, 17393173..17393403)) /locus_tag="TCM_028671" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26693.1" /translation="MEKDFFSIVVPLAWPSVPDLRLFAGQEAQILTTKSLKTMSTAYP ELRAIRTGDLPKSMKETKVSLIFKLLWGLNRNQGFRCSLGIIALFIELEVFGLAVGNQ IFSIYVCEFSPECILDCPGCIPPLEEDPLSSGSSTSDDWCELECRSNLLSGTIVQTED HQAQQRHHDPNPVLEEEPSIEPNPSSPLSDTVC" gene complement(17396760..17401010) /locus_tag="TCM_028672" /note="dbxref CacaoGD:Thecc1EG028672" mRNA complement(join(17396760..17398663,17400816..17401010)) /locus_tag="TCM_028672" /product="NUP50 protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s17930.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17930.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15926t1" CDS complement(17397229..17398608) /locus_tag="TCM_028672" /codon_start=1 /product="NUP50 protein, putative" /protein_id="EOY26694.1" /db_xref="Phytozome:POPTR_0001s17930.1" /db_xref="TAIR:AT1G52380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEK5" /translation="MGDAENALPPSKKRAAGRELSRDNPGLDDDEDSSEQETGTFKRA SDEVLANRRIVKVRRNQTTSTASSNPFSAIRLVPPMEPTITAETPSATPESTTTTTEV TAEAPIVNEKEVSEDGKDDVNKSEQNKDGNNQQSEKKTDETEPGSAKSEGESIKQYKN KEDEPVSDAVADTESAEDKGSNVVNEEIQKGANDEKPAGGGKPEDEDKKDEKTANEDN KDKSSENADSTAEGASLSSFQQLSSSQNAFTGLAGTGFSTTSFSFGSTQKDGSTSSVP LFGQKNDQPTFGFGLSTNGNSSLFNASGTSIVSKSEGSGFPAMQEVPVETGEENEKVV FLADSVLFEFIDGGWKERGKGELKVNVSTTGTERARLLMRAKGNYRLILNASLYPDMK LTNMDKKGITFACMNCTGEEKEGLSTFALKFKDASLVEEFRAAVMAHKGKAAAVLKTP ENSPKASEG" mobile_element 17397939..17413150 /note="source:scaffold_6_CACTA_0714 1 15212" /mobile_element_type="transposon:TIR/CACTA" gene complement(17401316..17441860) /locus_tag="TCM_028674" /note="dbxref CacaoGD:Thecc1EG028674" mRNA complement(join(17401316..17401388,17401528..17402046, 17402428..17402495,17403089..17403306,17403434..17403563, 17403818..17403924,17404660..17404753,17404838..17405034, 17405520..17405591,17405740..17405854,17406292..17406408, 17406517..17406608,17406707..17406883,17407002..17407076, 17407163..17407303,17407697..17407885,17408037..17408102, 17408214..17408364,17408723..17408791,17409153..17409301, 17409394..17409525,17409626..17409951,17410059..17410095, 17411612..17411666,17411791..17411852,17411971..17411991, 17412369..17412847)) /locus_tag="TCM_028674" /product="Coatomer, beta' subunit isoform 1" /inference="alignment:exonerate- protein:2:ricco:29872.m000541" /inference="similar to AA sequence:ricco:29872.m000541" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc232t13" mRNA complement(join(17401613..17402043,17402428..17402495, 17403165..17403306,17403434..17403563,17403818..17403924, 17404660..17404753,17404838..17405034,17405520..17405591, 17405740..17405854,17406292..17406408,17406517..17406608, 17406707..17406883,17407002..17407076,17407163..17407303, 17407697..17407885,17408037..17408102,17408214..17408364, 17408723..17408791,17409153..17409301,17409394..17409525, 17409626..17409951,17410059..17410095,17411612..17411666, 17411791..17411852,17411971..17411991,17412369..17412905, 17426434..17426514,17441676..17441860)) /locus_tag="TCM_028674" /product="Coatomer, beta' subunit isoform 8" /inference="alignment:exonerate- protein:2:ricco:29872.m000541" /inference="similar to AA sequence:ricco:29872.m000541" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b027735t1a3; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc232t13" mRNA complement(join(17401613..17402045,17402428..17402495, 17403165..17403306,17403434..17403563,17403818..17403924, 17404660..17404753,17404838..17405034,17405520..17405591, 17405740..17405854,17406292..17406408,17406517..17406608, 17406707..17406883,17407002..17407076,17407163..17407303, 17407697..17407885,17408037..17408102,17408214..17408364, 17408723..17408791,17409153..17409301,17409394..17409525, 17409626..17409951,17410059..17410095,17411612..17411666, 17411791..17411851)) /locus_tag="TCM_028674" /product="Coatomer, beta' subunit isoform 9" /inference="alignment:exonerate- protein:2:ricco:29872.m000541" /inference="similar to AA sequence:ricco:29872.m000541" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4529t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4529t5; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc232t13" mRNA complement(join(17401613..17402045,17402428..17402495, 17403089..17403306,17403434..17403563,17403818..17403924, 17404660..17404753,17404838..17405034,17405520..17405591, 17405740..17405854,17406292..17406408,17406517..17406608, 17406707..17406883,17407002..17407076,17407163..17407303, 17407697..17407885,17408037..17408102,17408214..17408364, 17408723..17408791,17409153..17409301,17409394..17409525, 17409626..17409951,17410059..17410095,17411612..17411666, 17411791..17411851)) /locus_tag="TCM_028674" /product="Coatomer, beta' subunit isoform 5" /inference="alignment:exonerate- protein:2:ricco:29872.m000541" /inference="similar to AA sequence:ricco:29872.m000541" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4529t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4529t5; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc232t13" mRNA complement(join(17401984..17402043,17402428..17402495, 17403089..17403306,17403434..17403518,17403818..17403924, 17404660..17404753,17404838..17405034,17405520..17405591, 17405740..17405854,17406292..17406408,17406517..17406608, 17406707..17406883,17407002..17407076,17407163..17407303, 17407697..17407885,17408037..17408102,17408214..17408364, 17408723..17408791,17409153..17409301,17409394..17409525, 17409626..17409951,17410059..17410095,17411612..17411666, 17411791..17411852,17411971..17411991,17412369..17412499)) /locus_tag="TCM_028674" /product="Coatomer, beta' subunit isoform 4" /inference="alignment:exonerate- protein:2:ricco:29872.m000541" /inference="similar to AA sequence:ricco:29872.m000541" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc232t5; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc232t13; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4529t5" mRNA complement(join(17401984..17402043,17402428..17402495, 17403124..17403306,17403434..17403563,17403818..17403924, 17404660..17404753,17404838..17405034,17405520..17405591, 17405740..17405854,17406292..17406408,17406517..17406608, 17406707..17406883,17407002..17407076,17407163..17407303, 17407697..17407885,17408037..17408102,17408214..17408364, 17408723..17408791,17409153..17409301,17409394..17409525, 17409626..17409951,17410059..17410095,17411612..17411666, 17411791..17411852,17411971..17411991,17412369..17412499)) /locus_tag="TCM_028674" /product="Coatomer, beta' subunit isoform 1" /inference="alignment:exonerate- protein:2:ricco:29872.m000541" /inference="similar to AA sequence:ricco:29872.m000541" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc232t8; alternateUTRof:Thecc1EG028674t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc232t13; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4529t5" mRNA complement(join(17401984..17402043,17402428..17402495, 17403089..17403306,17403434..17403563,17403818..17403924, 17404660..17404753,17404838..17405034,17405520..17405591, 17405740..17405854,17406292..17406408,17406517..17406608, 17406707..17406883,17407002..17407076,17407163..17407303, 17407697..17407885,17408037..17408102,17408214..17408364, 17408723..17408791,17409153..17409301,17409394..17409525, 17409626..17409951,17410059..17410095,17411612..17411666, 17411791..17411852,17411971..17411991,17412369..17412499)) /locus_tag="TCM_028674" /product="Coatomer, beta' subunit isoform 1" /inference="alignment:exonerate- protein:2:ricco:29872.m000541" /inference="similar to AA sequence:ricco:29872.m000541" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc232t13; alternateUTRof:Thecc1EG028674t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc232t13; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4529t5" mRNA complement(join(17401984..17402043,17402428..17402495, 17403089..17403306,17403434..17403597,17403818..17403924, 17404660..17404753,17404838..17405034,17405520..17405591, 17405740..17405854,17406292..17406408,17406517..17406608, 17406707..17406883,17407002..17407076,17407163..17407303, 17407697..17407885,17408037..17408102,17408214..17408364, 17408723..17408791,17409153..17409301,17409394..17409525, 17409626..17409951,17410059..17410095,17411612..17411666, 17411791..17411852,17411971..17411991,17412369..17412499)) /locus_tag="TCM_028674" /product="Coatomer, beta' subunit isoform 2" /inference="alignment:exonerate- protein:2:ricco:29872.m000541" /inference="similar to AA sequence:Phytozome:GSVIVT01017121001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc232t7; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc232t13; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4529t5" mRNA complement(join(17402426..17402495,17403089..17403306, 17403434..17403563,17403818..17403924,17404660..17405034, 17405520..17405591,17405740..17405854,17406292..17406408, 17406517..17406608,17406707..17406883,17407002..17407076, 17407163..17407303,17407697..17407885,17408037..17408102, 17408214..17408364,17408723..17408791,17409153..17409301, 17409394..17409525,17409626..17409951,17410059..17410095, 17411612..17411666,17411791..17411852,17411971..17411991, 17412369..17412499)) /locus_tag="TCM_028674" /product="Coatomer, beta' subunit isoform 6" /inference="alignment:exonerate- protein:2:ricco:29872.m000541" /inference="similar to AA sequence:ricco:29872.m000541" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc236t13; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc232t13; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4529t5" CDS complement(join(17402476..17402495,17403165..17403306, 17403434..17403563,17403818..17403924,17404660..17404753, 17404838..17405034,17405520..17405591,17405740..17405854, 17406292..17406408,17406517..17406608,17406707..17406883, 17407002..17407076,17407163..17407303,17407697..17407885, 17408037..17408102,17408214..17408364,17408723..17408791, 17409153..17409301,17409394..17409525,17409626..17409951, 17410059..17410095,17411612..17411666,17411791..17411852, 17411971..17411991,17412369..17412371)) /locus_tag="TCM_028674" /note="encoded by transcript variant 8; alternatively spliced; dbxref ricco:29872.m000541" /codon_start=1 /product="Coatomer, beta' subunit isoform 8" /protein_id="EOY26702.1" /db_xref="TAIR:AT1G52360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C827" /translation="MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNY QSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYI RCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFAS ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA IGYMKGSRRIVIGYDEGTIMVKIGREVPVASMDNSGKIIWAKHNEIQTVNIKSVGADF EVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSA LEFAWSSDGEYAVRESTSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICF YDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVQSYLDSGRPVDE QGVEDAFELLHETNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLG YLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVAR FLESRGMIEDALEVATDPDYRFELAIQLGRLEIAKEIAMEVQSESKWKQLGELAMSTG KLEMAEECMKQAMDLSGLLLLYSSLGDAEGISRLALLSKEQGKNNVAFLCLFMLGKLE ECLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNL FEDWQVALSVESKVAETRGVYPPAADYLNHADRSQMTLVEAFRNMQIEDEEPLENGDL DHEAAEPNGHDQNAEEQNGDEGSLEEAVVVDADSNDGAVLVNGNEPEEEWVLTPDH" CDS complement(join(17402476..17402495,17403165..17403306, 17403434..17403563,17403818..17403924,17404660..17404753, 17404838..17405034,17405520..17405591,17405740..17405854, 17406292..17406408,17406517..17406608,17406707..17406883, 17407002..17407076,17407163..17407303,17407697..17407885, 17408037..17408102,17408214..17408364,17408723..17408791, 17409153..17409301,17409394..17409525,17409626..17409951, 17410059..17410092)) /locus_tag="TCM_028674" /note="encoded by transcript variant 9; alternatively spliced; dbxref ricco:29872.m000541" /codon_start=1 /product="Coatomer, beta' subunit isoform 9" /protein_id="EOY26703.1" /db_xref="TAIR:AT1G52360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C827" /translation="MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTF NPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENT LNYGLERVWAIGYMKGSRRIVIGYDEGTIMVKIGREVPVASMDNSGKIIWAKHNEIQT VNIKSVGADFEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTAL AWRNRSFGSALEFAWSSDGEYAVRESTSKIKIFSKNFQEKRSVRPTFSAERIYGGTLL AMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVQS YLDSGRPVDEQGVEDAFELLHETNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMF HLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSI PKEHHNSVARFLESRGMIEDALEVATDPDYRFELAIQLGRLEIAKEIAMEVQSESKWK QLGELAMSTGKLEMAEECMKQAMDLSGLLLLYSSLGDAEGISRLALLSKEQGKNNVAF LCLFMLGKLEECLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAES LADPEEYPNLFEDWQVALSVESKVAETRGVYPPAADYLNHADRSQMTLVEAFRNMQIE DEEPLENGDLDHEAAEPNGHDQNAEEQNGDEGSLEEAVVVDADSNDGAVLVNGNEPEE EWVLTPDH" CDS complement(join(17403133..17403306,17403434..17403518, 17403818..17403924,17404660..17404753,17404838..17405034, 17405520..17405591,17405740..17405854,17406292..17406408, 17406517..17406608,17406707..17406883,17407002..17407076, 17407163..17407303,17407697..17407885,17408037..17408102, 17408214..17408364,17408723..17408791,17409153..17409301, 17409394..17409525,17409626..17409951,17410059..17410095, 17411612..17411666,17411791..17411852,17411971..17411991, 17412369..17412371)) /locus_tag="TCM_028674" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29872.m000541" /codon_start=1 /product="Coatomer, beta' subunit isoform 4" /protein_id="EOY26698.1" /db_xref="TAIR:AT1G52360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C827" /translation="MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNY QSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYI RCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFAS ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA IGYMKGSRRIVIGYDEGTIMVKIGREVPVASMDNSGKIIWAKHNEIQTVNIKSVGADF EVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSA LEFAWSSDGEYAVRESTSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICF YDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVQSYLDSGRPVDE QGVEDAFELLHETNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLG YLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVAR FLESRGMIEDALEVATDPDYRFELAIQLGRLEIAKEIAMEVQSESKWKQLGELAMSTG KLEMAEECMKQAMDLSGLLLLYSSLGDAEGISRLALLSKEQGKNNVAFLCLFMLGKLE ECLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNL FEDWQVALSVESKVAETRSQMTLVEAFRNMQIEDEEPLENGDLDHEAAEPNGHDQNAE EQNGDEGSLEEAVVVDADSNDGAVLVNGNEPEEEWGTNNEGTPSA" CDS complement(join(17403133..17403306,17403434..17403563, 17403818..17403924,17404660..17404753,17404838..17405034, 17405520..17405591,17405740..17405854,17406292..17406408, 17406517..17406608,17406707..17406883,17407002..17407076, 17407163..17407303,17407697..17407885,17408037..17408102, 17408214..17408364,17408723..17408791,17409153..17409301, 17409394..17409525,17409626..17409951,17410059..17410095, 17411612..17411666,17411791..17411852,17411971..17411991, 17412369..17412371)) /locus_tag="TCM_028674" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29872.m000541" /codon_start=1 /product="Coatomer, beta' subunit isoform 1" /protein_id="EOY26695.1" /db_xref="TAIR:AT1G52360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C827" /translation="MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNY QSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYI RCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFAS ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA IGYMKGSRRIVIGYDEGTIMVKIGREVPVASMDNSGKIIWAKHNEIQTVNIKSVGADF EVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSA LEFAWSSDGEYAVRESTSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICF YDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVQSYLDSGRPVDE QGVEDAFELLHETNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLG YLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVAR FLESRGMIEDALEVATDPDYRFELAIQLGRLEIAKEIAMEVQSESKWKQLGELAMSTG KLEMAEECMKQAMDLSGLLLLYSSLGDAEGISRLALLSKEQGKNNVAFLCLFMLGKLE ECLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNL FEDWQVALSVESKVAETRGVYPPAADYLNHADRSQMTLVEAFRNMQIEDEEPLENGDL DHEAAEPNGHDQNAEEQNGDEGSLEEAVVVDADSNDGAVLVNGNEPEEEWGTNNEGTP SA" CDS complement(join(17403133..17403306,17403434..17403563, 17403818..17403924,17404660..17404753,17404838..17405034, 17405520..17405591,17405740..17405854,17406292..17406408, 17406517..17406608,17406707..17406883,17407002..17407076, 17407163..17407303,17407697..17407885,17408037..17408102, 17408214..17408364,17408723..17408791,17409153..17409301, 17409394..17409525,17409626..17409951,17410059..17410095, 17411612..17411666,17411791..17411852,17411971..17411991, 17412369..17412371)) /locus_tag="TCM_028674" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29872.m000541" /codon_start=1 /product="Coatomer, beta' subunit isoform 1" /protein_id="EOY26697.1" /db_xref="TAIR:AT1G52360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C827" /translation="MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNY QSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYI RCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFAS ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA IGYMKGSRRIVIGYDEGTIMVKIGREVPVASMDNSGKIIWAKHNEIQTVNIKSVGADF EVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSA LEFAWSSDGEYAVRESTSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICF YDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVQSYLDSGRPVDE QGVEDAFELLHETNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLG YLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVAR FLESRGMIEDALEVATDPDYRFELAIQLGRLEIAKEIAMEVQSESKWKQLGELAMSTG KLEMAEECMKQAMDLSGLLLLYSSLGDAEGISRLALLSKEQGKNNVAFLCLFMLGKLE ECLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNL FEDWQVALSVESKVAETRGVYPPAADYLNHADRSQMTLVEAFRNMQIEDEEPLENGDL DHEAAEPNGHDQNAEEQNGDEGSLEEAVVVDADSNDGAVLVNGNEPEEEWGTNNEGTP SA" CDS complement(join(17403133..17403306,17403434..17403563, 17403818..17403924,17404660..17404753,17404838..17405034, 17405520..17405591,17405740..17405854,17406292..17406408, 17406517..17406608,17406707..17406883,17407002..17407076, 17407163..17407303,17407697..17407885,17408037..17408102, 17408214..17408364,17408723..17408791,17409153..17409301, 17409394..17409525,17409626..17409951,17410059..17410095, 17411612..17411666,17411791..17411852,17411971..17411991, 17412369..17412371)) /locus_tag="TCM_028674" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:29872.m000541" /codon_start=1 /product="Coatomer, beta' subunit isoform 1" /protein_id="EOY26701.1" /db_xref="TAIR:AT1G52360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C827" /translation="MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNY QSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYI RCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFAS ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA IGYMKGSRRIVIGYDEGTIMVKIGREVPVASMDNSGKIIWAKHNEIQTVNIKSVGADF EVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSA LEFAWSSDGEYAVRESTSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICF YDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVQSYLDSGRPVDE QGVEDAFELLHETNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLG YLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVAR FLESRGMIEDALEVATDPDYRFELAIQLGRLEIAKEIAMEVQSESKWKQLGELAMSTG KLEMAEECMKQAMDLSGLLLLYSSLGDAEGISRLALLSKEQGKNNVAFLCLFMLGKLE ECLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNL FEDWQVALSVESKVAETRGVYPPAADYLNHADRSQMTLVEAFRNMQIEDEEPLENGDL DHEAAEPNGHDQNAEEQNGDEGSLEEAVVVDADSNDGAVLVNGNEPEEEWGTNNEGTP SA" CDS complement(join(17403133..17403306,17403434..17403563, 17403818..17403924,17404660..17404753,17404838..17405034, 17405520..17405591,17405740..17405854,17406292..17406408, 17406517..17406608,17406707..17406883,17407002..17407076, 17407163..17407303,17407697..17407885,17408037..17408102, 17408214..17408364,17408723..17408791,17409153..17409301, 17409394..17409525,17409626..17409951,17410059..17410092)) /locus_tag="TCM_028674" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29872.m000541" /codon_start=1 /product="Coatomer, beta' subunit isoform 5" /protein_id="EOY26699.1" /db_xref="TAIR:AT1G52360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C827" /translation="MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTF NPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENT LNYGLERVWAIGYMKGSRRIVIGYDEGTIMVKIGREVPVASMDNSGKIIWAKHNEIQT VNIKSVGADFEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTAL AWRNRSFGSALEFAWSSDGEYAVRESTSKIKIFSKNFQEKRSVRPTFSAERIYGGTLL AMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVQS YLDSGRPVDEQGVEDAFELLHETNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMF HLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSI PKEHHNSVARFLESRGMIEDALEVATDPDYRFELAIQLGRLEIAKEIAMEVQSESKWK QLGELAMSTGKLEMAEECMKQAMDLSGLLLLYSSLGDAEGISRLALLSKEQGKNNVAF LCLFMLGKLEECLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAES LADPEEYPNLFEDWQVALSVESKVAETRGVYPPAADYLNHADRSQMTLVEAFRNMQIE DEEPLENGDLDHEAAEPNGHDQNAEEQNGDEGSLEEAVVVDADSNDGAVLVNGNEPEE EWGTNNEGTPSA" CDS complement(join(17403582..17403597,17403818..17403924, 17404660..17404753,17404838..17405034,17405520..17405591, 17405740..17405854,17406292..17406408,17406517..17406608, 17406707..17406883,17407002..17407076,17407163..17407303, 17407697..17407885,17408037..17408102,17408214..17408364, 17408723..17408791,17409153..17409301,17409394..17409525, 17409626..17409951,17410059..17410095,17411612..17411666, 17411791..17411852,17411971..17411991,17412369..17412371)) /locus_tag="TCM_028674" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Coatomer, beta' subunit isoform 2" /protein_id="EOY26696.1" /db_xref="Phytozome:GSVIVT01017121001" /db_xref="TAIR:AT1G52360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C827" /translation="MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNY QSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYI RCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFAS ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA IGYMKGSRRIVIGYDEGTIMVKIGREVPVASMDNSGKIIWAKHNEIQTVNIKSVGADF EVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSA LEFAWSSDGEYAVRESTSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICF YDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVQSYLDSGRPVDE QGVEDAFELLHETNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLG YLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVAR FLESRGMIEDALEVATDPDYRFELAIQLGRLEIAKEIAMEVQSESKWKQLGELAMSTG KLEMAEECMKQAMDLSGLLLLYSSLGDAEGISRLALLSKEQGKNNVAFLCLFMLGKLE ECLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNL FEDWQVALSVESKVAETRWICY" CDS complement(join(17404834..17405034,17405520..17405591, 17405740..17405854,17406292..17406408,17406517..17406608, 17406707..17406883,17407002..17407076,17407163..17407303, 17407697..17407885,17408037..17408102,17408214..17408364, 17408723..17408791,17409153..17409301,17409394..17409525, 17409626..17409951,17410059..17410095,17411612..17411666, 17411791..17411852,17411971..17411991,17412369..17412371)) /locus_tag="TCM_028674" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29872.m000541" /codon_start=1 /product="Coatomer, beta' subunit isoform 6" /protein_id="EOY26700.1" /db_xref="TAIR:AT1G52360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C827" /translation="MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNY QSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYI RCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFAS ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA IGYMKGSRRIVIGYDEGTIMVKIGREVPVASMDNSGKIIWAKHNEIQTVNIKSVGADF EVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSA LEFAWSSDGEYAVRESTSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICF YDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVQSYLDSGRPVDE QGVEDAFELLHETNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLG YLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVAR FLESRGMIEDALEVATDPDYRFELAIQLGRLEIAKEIAMEVQSESKWKQLGELAMSTG KLEMAEECMKQAMDLSGLLLLYSSLGDAEGISRLALLSKEQGKNNVAFLCLFMLGKLE ECLQLLVER" mobile_element complement(17413249..17413777) /note="source:CACAO_Again_on_E100_scaffold_4 125 669" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(17413778..17413956) /note="source:CACAO_Again_on_E100_scaffold_4 59 260" /mobile_element_type="transposon:TIR/hAT" mobile_element 17415427..17418416 /note="source:CACAO_M_E49058_F33_scaffold_6 1 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17427385..17428879) /note="source:CACAO_M_E52470_F17_scaffold_7 1 1505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17431617..17433138 /note="source:CACAO_M_E49059_F17_scaffold_6 1 1522" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17436746..17436820 /note="source:scaffold_7_CACTA_0785 99 181" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17439027..17439037 /note="source:scaffold_7_CACTA_0785 186 284" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17439037..17439100) /note="source:CACAO_M_E14081_F316_scaffold_3 13580 13640" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17439038..17439129 /note="source:CACAO_M_E12297_F14_scaffold_3 6327 6416" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17439052..17439136 /note="source:CACAO_M_E42514_F40_scaffold_5 10284 10367" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17439520..17439903 /note="source:CACAO_M_E22265_F82_scaffold_3 4504 4887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17441654..17442152) /note="source:CACAO_M_E58012_F15_scaffold_9 1 499" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17442177..17452607) /locus_tag="TCM_028677" /note="dbxref CacaoGD:Thecc1EG028677" mRNA complement(join(17442177..17442505,17452029..17452607)) /locus_tag="TCM_028677" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001521t2" /inference="similar to AA sequence:Phytozome:GSVIVT01022345001" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1156t6_C1" gene 17442252..17445318 /locus_tag="TCM_028678" /note="dbxref CacaoGD:Thecc1EG028678" mRNA join(17442252..17442686,17444629..17444718, 17444825..17445318) /locus_tag="TCM_028678" /product="Cyclin B2,3 isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034388t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s27280.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1156t5" mRNA join(17442271..17442686,17444629..17444718, 17444825..17445045,17445146..17445281) /locus_tag="TCM_028678" /product="Cyclin B2,3 isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034388t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s27280.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3789t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1156t5; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1132t5" CDS complement(join(17442423..17442505,17452029..17452545)) /locus_tag="TCM_028677" /note="paralog of Thecc1EG001521t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26704.1" /db_xref="Phytozome:GSVIVT01022345001" /translation="MLLLCFQTTIFTVNLSPATQTQAIEEGRKELMEMIRNMPEFSYE LSLKDMVDEQHASEEVKGKAVSEDESFCSETEAQTKKQKKKKRKKRKAGPISRSGGME ADSFLIKMFFPSSLSFKKNQRLKIAPRFPLVHPLRDLGSLTKSNGGLKGFSSGGIIKT EMITAAATAVQAVLPSDPSSSCPARLLPSSTTQIEAFFP" CDS join(17442648..17442686,17444629..17444718, 17444825..17445045,17445146..17445155) /locus_tag="TCM_028678" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG034388t1" /codon_start=1 /product="Cyclin B2,3 isoform 2" /protein_id="EOY26706.1" /db_xref="Phytozome:POPTR_0005s27280.1" /db_xref="TAIR:AT1G20610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D3XL58" /translation="MTKMARRQDSHKMGTSCVAPNYMALQCDIKERMRGILIDWLIEV HYKFELMEETLYLTVNLIDRFLAIQQVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLI LISDKAYSRKEVPDMRN" CDS join(17442648..17442686,17444629..17444718, 17444825..17445115) /locus_tag="TCM_028678" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG034388t1" /codon_start=1 /product="Cyclin B2,3 isoform 1" /protein_id="EOY26705.1" /db_xref="Phytozome:POPTR_0005s27280.1" /db_xref="TAIR:AT1G20610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D3XL58" /translation="MTKMARRQDSHKMGTSCVAPNYMALQCDIKERMRGILIDWLIEV HYKFELMEETLYLTVNLIDRFLAIQQVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLI LISDKAYSRKEVPDMVCNSTFSFHDFTPIFLTSLNQK" gene complement(17446382..17452380) /locus_tag="TCM_028679" /note="dbxref CacaoGD:Thecc1EG028679" mRNA complement(join(17446382..17446985,17447173..17447241, 17447449..17447597,17447695..17447771,17447929..17448300, 17448389..17448425,17448532..17448586,17448788..17448849, 17448960..17448980,17449105..17449262,17451070..17451663, 17452248..17452380)) /locus_tag="TCM_028679" /product="Coatomer subunit beta'-2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028681t1" /inference="similar to AA sequence:Phytozome:Glyma07g03890.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1035t4" gene complement(17446759..17457436) /locus_tag="TCM_028681" /note="dbxref CacaoGD:Thecc1EG028681" mRNA complement(join(17446759..17447028,17455334..17455544, 17455752..17455900,17455998..17456129,17456232..17456557, 17456646..17456682,17456789..17456843, 17457045..>17457106)) /locus_tag="TCM_028681" /product="Coatomer subunit beta'-2 isoform 3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028679t1" /inference="similar to AA sequence:Phytozome:Glyma07g03890.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1051t10; inference alignment:Newbler:10:TSA:cgbaB_g03281t00001; inference alignment:Newbler:10:TSA:cgbaP1_g01045t00001" CDS complement(join(17446907..17446985,17447173..17447241, 17447449..17447597,17447695..17447771,17447929..17448300, 17448389..17448425,17448532..17448586,17448788..17448849, 17448960..17448980,17449105..17449107)) /locus_tag="TCM_028679" /note="paralog of Thecc1EG028681t1" /codon_start=1 /product="Coatomer subunit beta'-2" /protein_id="EOY26707.1" /db_xref="Phytozome:Glyma07g03890.1" /db_xref="TAIR:AT3G15980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C827" /translation="MALSLIIEKEFVQTSERVKSVDLHPTKPWILAALYSGNVCIWDY QLQKIEKSFKVTESPARSAKFIVRENWIVVGADDGFIRVYNYDTMEMIKEIEAHTDFI RSLAIHPTLPFILSSSDDKLIKLWDWEKGWICSRIFEGHGHYVMQVAFNPKDLNTFAS ASLDCTIKVPAEDLLIYCKQLLHWINCIEFFVAANKPYLISGSDDYTAKVWDYETKSC VQTLEGHTHNVTAICGHPELPNIITCSEDGTVGVWDTTSCRLEKTLEYGLERVWTVAY MKGSSKVVFGCDKGTIVAKISSSLGSDSAIV" mobile_element 17447923..17451670 /note="source:CACAO_Helitron_SS_E51_scaffold_6 5638 8297" /mobile_element_type="transposon:Helitron" mobile_element 17451771..17459283 /note="source:CACAO_Helitron_SS_E51_scaffold_6 1 8297" /mobile_element_type="transposon:Helitron" gene 17452475..17454683 /locus_tag="TCM_028680" /note="dbxref CacaoGD:Thecc1EG028680" mRNA join(17452475..17452667,17452932..17453021, 17453128..17453349,17454477..17454683) /locus_tag="TCM_028680" /product="Cyclin B2,3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028678t1" /inference="similar to AA sequence:ricco:30170.m014362" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1112t3" CDS join(17452959..17453021,17453128..17453349, 17454477..17454566) /locus_tag="TCM_028680" /note="dbxref ricco:30170.m014362; paralog of Thecc1EG028678t1" /codon_start=1 /product="Cyclin B2,3" /protein_id="EOY26711.1" /db_xref="TAIR:AT1G20610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D3XL58" /translation="MALQCDIKERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFL AIQQVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVPDMVWLGEFK SKVKICCDSFKFYLDFKIGIPF" mRNA complement(join(17454926..17455288,17455476..17455544, 17455752..17455900,17455998..17456129,17456232..17456557, 17456646..17456682,17456789..17456843,17457045..17457106, 17457217..17457237,17457362..17457436)) /locus_tag="TCM_028681" /product="Coatomer subunit beta'-2 isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028679t1" /inference="similar to AA sequence:Phytozome:Glyma07g03890.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03281t00001; inference alignment:Newbler:10:TSA:cgbaB_g03281t00001" CDS complement(join(17455210..17455288,17455476..17455544, 17455752..17455900,17455998..17456129,17456232..17456557, 17456646..17456682,17456789..17456843,17457045..17457106, 17457217..17457237,17457362..17457364)) /locus_tag="TCM_028681" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG028679t1" /codon_start=1 /product="Coatomer subunit beta'-2 isoform 1" /protein_id="EOY26708.1" /db_xref="Phytozome:Glyma07g03890.1" /db_xref="TAIR:AT3G15980.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C827" /translation="MALSLIIEKEFVQTSERVKSVDLHPTKPWILAALYSGNVCIWDY QLQKIEKSFKVTESPARSAKFIVRENWIVVGADDGFIRVYNYDTMEMIKEIEAHTDFI RSLAIHPTLPFILSSSDDKLIKLWDWEKGWICSRIFEGHGHYVMQVAFNPKDLNTFAS ASLDCTIKIWNMDSASPNFTLDAHAKGINCIEFFVAANKPYLISGSDDYTAKVWDYET KSCVQTLEGHTHNVTAICGHPELPNIITCSEDGTVGVWDTTSCRLEKTLEYGLERVWT VAYMKGSSKVVFGCDKGTIVAKISSSLGSDSAIV" CDS complement(join(17455472..17455544,17455752..17455900, 17455998..17456129,17456232..17456557,17456646..17456682, 17456789..17456843,17457045..>17457106)) /locus_tag="TCM_028681" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG028679t1" /codon_start=1 /product="Coatomer subunit beta'-2 isoform 3" /protein_id="EOY26709.1" /db_xref="Phytozome:Glyma07g03890.1" /db_xref="TAIR:AT1G79990.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C827" /translation="KEFVQTSERVKSVDLHPTKPWILAALYSGNVCIWDYQLQKIEKS FKVTESPARSAKFIVRENWIVVGADDGFIRVYNYDTMEMIKEIEAHTDFIRSLAIHPT LPFILSSSDDKLIKLWDWEKGWICSRIFEGHGHYVMQVAFNPKDLNTFASASLDCTIK IWNMDSASPNFTLDAHAKGINCIEFFVAANKPYLISGSDDYTAKVWDYETKSCVQTLE GHTHNVTAICGHPELPNIITCSEDGTVGVWDTTSCRLEKTLEYGLERVWTVAYMKGSS K" mRNA complement(join(17455525..17455584,17455752..17455900, 17455998..17456129,17456232..17456557,17456646..17456682, 17456789..17456843,17457045..>17457106)) /locus_tag="TCM_028681" /product="Coatomer subunit beta'-2 isoform 4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028679t1" /inference="similar to AA sequence:Phytozome:Glyma08g22140.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1051t1; inference alignment:Newbler:10:TSA:cgbaB_g03281t00001; inference alignment:Newbler:10:TSA:cgbaP1_g01045t00001" CDS complement(join(17455578..17455584,17455752..17455900, 17455998..17456129,17456232..17456557,17456646..17456682, 17456789..17456843,17457045..>17457106)) /locus_tag="TCM_028681" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG028679t1" /codon_start=1 /product="Coatomer subunit beta'-2 isoform 4" /protein_id="EOY26710.1" /db_xref="Phytozome:Glyma08g22140.1" /db_xref="TAIR:AT3G15980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C827" /translation="KEFVQTSERVKSVDLHPTKPWILAALYSGNVCIWDYQLQKIEKS FKVTESPARSAKFIVRENWIVVGADDGFIRVYNYDTMEMIKEIEAHTDFIRSLAIHPT LPFILSSSDDKLIKLWDWEKGWICSRIFEGHGHYVMQVAFNPKDLNTFASASLDCTIK IWNMDSASPNFTLDAHAKGINCIEFFVAANKPYLISGSDDYTAKVWDYETKSCVQTLE GHTHNVTAICGHPELPNIITCSEDGTVGVWDTTSCSF" gene 17468134..17473185 /locus_tag="TCM_028682" /note="dbxref CacaoGD:Thecc1EG028682" mRNA join(17468134..17468558,17469102..17469150, 17469257..17469464,17469803..17469974,17470430..17470495, 17470587..17470700,17470795..17470911,17471126..17471252, 17471334..17471620,17471762..17471952,17472048..17472133, 17472290..17472366,17472447..17473185) /locus_tag="TCM_028682" /product="Sulfate transporter 3,4" /inference="alignment:exonerate- protein:2:ricco:29872.m000543" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010882t1" /inference="similar to AA sequence:ricco:29872.m000543" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3715t3" CDS join(17468199..17468558,17469102..17469150, 17469257..17469464,17469803..17469974,17470430..17470495, 17470587..17470700,17470795..17470911,17471126..17471252, 17471334..17471620,17471762..17471952,17472048..17472133, 17472290..17472366,17472447..17472590) /locus_tag="TCM_028682" /note="dbxref ricco:29872.m000543; paralog of Thecc1EG010882t1" /codon_start=1 /product="Sulfate transporter 3,4" /protein_id="EOY26712.1" /db_xref="TAIR:AT3G15990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LW86" /translation="MGANSNRVEDFSSHNGSAATTTTLKVSTEIPMPPPEAMEIHNVC LPPQKTTFQKLKHRLSEIFFPDDPLYRFKKQTWRKKLVLGLQCLFPIFQWGPEYNLSL FRSDIISGLTIASLAIPQGISYAKLANLPPIIGLYSSFIPPLIYSVLGSSRHLAVGPV SIASLAMGTMLSESVSPVEEPILYLKLAFTATFFAGLFQASLGLLRLGFVIDFLSKAT LIGFMAGAAVIVSLQQLKGLLGIVHFTGKMQLIPVMTSVFDHRKEWSWQTVGLGSIFL LFLLTTRHISMRKPKLFWVSAAAPLTSVILSTLFVFCVKSKAHGISIIGQLQKGLNPP SLNMLYFNGQYLALAIKTGIITGILSLTEGIAVGRTFASLRNYQVDGNKEMMAIGLMN IAGSCTSCYVTTGSFSRSAVNYNAGAQTAVSNIVLATAVLVTLLFLMPLFYYTPNVIL GAIIITAVIGLIDYQAAYKLWKVDKLDFLACVCSFFGVLFISVPLGLAIAVGVSVFKI LLHVTRPNTLVLGNIPRTEIYQSLNRYREASRVPSFLILAIESPIYFANSTYLQERIL RWVREEEEWIKANRESTLKCIIIDMTAVTAIDTSGIDMVCELRKMLEKRSLQLVLVNP VGSVTEKLHHSKILESFGMNAFYLTVGKAVADVSASWKPQP" gene complement(17473582..17476734) /locus_tag="TCM_028683" /note="dbxref CacaoGD:Thecc1EG028683" mRNA complement(join(17473582..17473988,17474835..17475061, 17475853..17476468,17476622..17476734)) /locus_tag="TCM_028683" /product="Structural molecules" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017116001" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400049847" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08914t00001" CDS complement(join(17473981..17473988,17474835..17475061, 17475853..17476076)) /locus_tag="TCM_028683" /codon_start=1 /product="Structural molecules" /protein_id="EOY26713.1" /db_xref="Phytozome:PGSC0003DMP400049847" /db_xref="TAIR:AT1G79990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSD6" /translation="MFYGAVVWDPWLIVAQIVCLQCLYYLSLGVFLSFLVGTRVSRMS LVYFFDFATVTTSTVTGWCVIASFLLSSIAGAGYLLYLIERAKKCLDFSATLYIIHLF ICIVYGGWPSSVTWWVVNGIGVAVMALLGEYLCIRRELREIPITRYRSNV" gene complement(17477007..17483750) /locus_tag="TCM_028684" /note="dbxref CacaoGD:Thecc1EG028684" mRNA complement(join(17477007..17479190,17479617..17479754, 17479871..17479974,17480610..17480687,17483253..17483750)) /locus_tag="TCM_028684" /product="MAR binding filament-like protein 1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017115001" /inference="similar to AA sequence:Phytozome:POPTR_0001s17980.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3731t3" mRNA complement(join(17477145..17479190,17479617..17479754, 17479871..17479974,17480610..17480687,17483313..17483653)) /locus_tag="TCM_028684" /product="MAR binding filament-like protein 1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017115001" /inference="similar to AA sequence:Phytozome:POPTR_0001s17980.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3731t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3731t3" mRNA complement(join(17477145..17479190,17479617..17479754, 17479871..17479974,17483253..17483653)) /locus_tag="TCM_028684" /product="MAR binding filament-like protein 1, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017115001" /inference="similar to AA sequence:Phytozome:POPTR_0001s17980.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3731t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3731t3" CDS complement(join(17477481..17479190,17479617..17479754, 17479871..17479974,17480610..17480687,17483313..17483523)) /locus_tag="TCM_028684" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="MAR binding filament-like protein 1, putative isoform 2" /protein_id="EOY26715.1" /db_xref="Phytozome:POPTR_0001s17980.1" /db_xref="TAIR:AT3G16000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SQC4" /translation="MVFVIGSSCYLQTLISNPQMLFSSSQSVFFNVRNAETKRRRRSI RSPMACLAHEDPNDDVSSKRRAVLLVGRERQRKRKKDGEVEETMELPMAVASEGSEVK KPERNQIAESQLNKLEANQIAESQLNKPEEAREDIPSNPFLSLLNGLGIFGAGVLGAL YALVQKEKKATNETIESMKIKLQEKEAAIFSTEKDFESQLLNEQEKQTKQLKEAKEEQ LSLMDRLDAANNTITGLGQELKNEKRLIEKLKAQIDSLQSNLTKAGEEKRSLEEELKK KLDSIEVLQQKVNLLSSELNDKEGKIQKLNSSLVEKESELKNLNSTLKQTKEELGKAH TEIEGLKEELLRNQSELESKSSVVDELNARISYLMVERDNSTQEFGALQDDYNDLKLS SEKKAAEGSKLLGEREKEIHQLKDKLELALNDVSENKAIFADLNKEKEHLKGALEVEL HNVKNLKDELQLAEETIAKTRSEASDVCNQLNKSINHCKELESEVSRVRAEFDEAKLR LQGSLDESEQSGKVLASELTTAKELLKKTREELQIFSHELTAVTENRDSLQKELVDVY KKAETTANDLKEEKKIVSSLNKEVQALEKQIVKDKEARKSLETDLEEATKSLDEMNRN ILKFSVDLERANAKISSLEDEKMVLYKTLTEQKNASKEARENMEDAHNLVMTLGKERE SLEKRAKKLEEELASAKGEILRLRSQINSSKVGANDQPQQKGETEAKVTVSARKSTRR RKSSSQ" CDS complement(join(17477481..17479190,17479617..17479754, 17479871..17479974,17483253..17483523)) /locus_tag="TCM_028684" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="MAR binding filament-like protein 1, putative isoform 3" /protein_id="EOY26716.1" /db_xref="Phytozome:POPTR_0001s17980.1" /db_xref="TAIR:AT3G16000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M7J4" /translation="MVFVIGSSCYLQTLISNPQMLFSSSQSVFFNVRNAETKRRRRSI RSPMACLAHEDPNDDVSSKRRAVLLVGMSILPFLQLRAQALEGSTLKGSEVKKPERNQ IAESQLNKLEANQIAESQLNKPEEAREDIPSNPFLSLLNGLGIFGAGVLGALYALVQK EKKATNETIESMKIKLQEKEAAIFSTEKDFESQLLNEQEKQTKQLKEAKEEQLSLMDR LDAANNTITGLGQELKNEKRLIEKLKAQIDSLQSNLTKAGEEKRSLEEELKKKLDSIE VLQQKVNLLSSELNDKEGKIQKLNSSLVEKESELKNLNSTLKQTKEELGKAHTEIEGL KEELLRNQSELESKSSVVDELNARISYLMVERDNSTQEFGALQDDYNDLKLSSEKKAA EGSKLLGEREKEIHQLKDKLELALNDVSENKAIFADLNKEKEHLKGALEVELHNVKNL KDELQLAEETIAKTRSEASDVCNQLNKSINHCKELESEVSRVRAEFDEAKLRLQGSLD ESEQSGKVLASELTTAKELLKKTREELQIFSHELTAVTENRDSLQKELVDVYKKAETT ANDLKEEKKIVSSLNKEVQALEKQIVKDKEARKSLETDLEEATKSLDEMNRNILKFSV DLERANAKISSLEDEKMVLYKTLTEQKNASKEARENMEDAHNLVMTLGKERESLEKRA KKLEEELASAKGEILRLRSQINSSKVGANDQPQQKGETEAKVTVSARKSTRRRKSSSQ " CDS complement(join(17477481..17479190,17479617..17479754, 17479871..17479974,17480610..17480687,17483253..17483523)) /locus_tag="TCM_028684" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="MAR binding filament-like protein 1, putative isoform 1" /protein_id="EOY26714.1" /db_xref="Phytozome:POPTR_0001s17980.1" /db_xref="TAIR:AT3G16000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SQC4" /translation="MVFVIGSSCYLQTLISNPQMLFSSSQSVFFNVRNAETKRRRRSI RSPMACLAHEDPNDDVSSKRRAVLLVGMSILPFLQLRAQALEGSTLSRERQRKRKKDG EVEETMELPMAVASEGSEVKKPERNQIAESQLNKLEANQIAESQLNKPEEAREDIPSN PFLSLLNGLGIFGAGVLGALYALVQKEKKATNETIESMKIKLQEKEAAIFSTEKDFES QLLNEQEKQTKQLKEAKEEQLSLMDRLDAANNTITGLGQELKNEKRLIEKLKAQIDSL QSNLTKAGEEKRSLEEELKKKLDSIEVLQQKVNLLSSELNDKEGKIQKLNSSLVEKES ELKNLNSTLKQTKEELGKAHTEIEGLKEELLRNQSELESKSSVVDELNARISYLMVER DNSTQEFGALQDDYNDLKLSSEKKAAEGSKLLGEREKEIHQLKDKLELALNDVSENKA IFADLNKEKEHLKGALEVELHNVKNLKDELQLAEETIAKTRSEASDVCNQLNKSINHC KELESEVSRVRAEFDEAKLRLQGSLDESEQSGKVLASELTTAKELLKKTREELQIFSH ELTAVTENRDSLQKELVDVYKKAETTANDLKEEKKIVSSLNKEVQALEKQIVKDKEAR KSLETDLEEATKSLDEMNRNILKFSVDLERANAKISSLEDEKMVLYKTLTEQKNASKE ARENMEDAHNLVMTLGKERESLEKRAKKLEEELASAKGEILRLRSQINSSKVGANDQP QQKGETEAKVTVSARKSTRRRKSSSQ" gene complement(17484846..17488831) /locus_tag="TCM_028685" /note="dbxref CacaoGD:Thecc1EG028685" mRNA complement(join(17484846..17484936,17485862..17485992, 17486082..17487192,17488354..17488831)) /locus_tag="TCM_028685" /product="Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g01720.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17990.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc701t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc690t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3867t5" mRNA complement(join(17484846..17484936,17485862..17485992, 17486088..17487192,17488354..17488379)) /locus_tag="TCM_028685" /product="Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g01720.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17990.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc690t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc690t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3867t5" mRNA complement(join(17484846..17484936,17485862..17487192, 17488354..17488379)) /locus_tag="TCM_028685" /product="Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g01720.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17990.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc690t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc690t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3867t5" CDS complement(join(17484884..17484936,17485862..17485992, 17486088..17487109)) /locus_tag="TCM_028685" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 6" /protein_id="EOY26722.1" /db_xref="Phytozome:POPTR_0001s17990.1" /db_xref="TAIR:AT5G11460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEL0" /translation="MDGNVMADPDSESYFQSDTLGLRHISSSLFNIPGFLVGFSTKGS SDSDMVRSPTSPLDLRVFANFSNPFSVRSPRSSSQSGYQKKWDCSKMGLGIVNLLADE IKSDGEDLDSPKRKNIIFGPQVKTKFPSSSRYSHEFLGNSMKSNSLPRNYIISQLSKD RKPNTNSGGSSLVFGNEEVPLEPKSDSSRLSPSFIASTKNCNLSSRSFCSENGTTSLN SSSLPIGRALQVDDSLLSKPSSLPIPVGHSIGSLSAHEIELSEDYTCIISHGPNPKTT HIFGDCILECHNTELTNFDKKAEPETKVSQLDKSPETSTPYPSDEFLSFCYSCQKKLE KDEDIYIGEKAFCSFDCRSEEIFAEEMEKTCNNSFNGSPEQSDDEDLFLMEYMLHRGL EVHERSNAG" CDS complement(join(17484884..17484936,17485862..17485992, 17486082..17487109)) /locus_tag="TCM_028685" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 5" /protein_id="EOY26721.1" /db_xref="Phytozome:POPTR_0001s17990.1" /db_xref="TAIR:AT5G11460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEL0" /translation="MDGNVMADPDSESYFQSDTLGLRHISSSLFNIPGFLVGFSTKGS SDSDMVRSPTSPLDLRVFANFSNPFSVRSPRSSSQSGYQKKWDCSKMGLGIVNLLADE IKSDGEDLDSPKRKNIIFGPQVKTKFPSSSRYSHEFLGNSMKSNSLPRNYIISQLSKD RKPNTNSGGSSLVFGNEEVPLEPKSDSSRLSPSFIASTKNCNLSSRSFCSENGTTSLN SSSLPIGRALQVDDSLLSKPSSLPIPVGHSIGSLSAHEIELSEDYTCIISHGPNPKTT HIFGDCILECHNTELTNFDKKAEPETKVSQLDKSPETSTPYPSDEFLSFCYSCQKKLE KDEDIYMYRGEKAFCSFDCRSEEIFAEEMEKTCNNSFNGSPEQSDDEDLFLMEYMLHR GLEVHERSNAG" mRNA complement(join(17485439..17485724,17485846..17485992, 17486088..17487192,17488354..17488831)) /locus_tag="TCM_028685" /product="Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g01720.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17990.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc701t7_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3867t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc690t4" mRNA complement(join(17485439..17485724,17485862..17485992, 17486088..17487192,17488354..17488618)) /locus_tag="TCM_028685" /product="Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g01720.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17990.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3867t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3867t5" mRNA complement(join(17485439..17485724,17485862..17485992, 17486082..17487192,17488354..17488618)) /locus_tag="TCM_028685" /product="Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g01720.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17990.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3867t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3867t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc690t4" mRNA complement(join(17485439..17485724,17485846..17485992, 17486082..17487192,17488354..17488618)) /locus_tag="TCM_028685" /product="Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g01720.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17990.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3867t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3867t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc690t4" CDS complement(join(17485669..17485724,17485862..17485992, 17486088..17487109)) /locus_tag="TCM_028685" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 1" /protein_id="EOY26717.1" /db_xref="Phytozome:POPTR_0001s17990.1" /db_xref="TAIR:AT5G11460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEL0" /translation="MDGNVMADPDSESYFQSDTLGLRHISSSLFNIPGFLVGFSTKGS SDSDMVRSPTSPLDLRVFANFSNPFSVRSPRSSSQSGYQKKWDCSKMGLGIVNLLADE IKSDGEDLDSPKRKNIIFGPQVKTKFPSSSRYSHEFLGNSMKSNSLPRNYIISQLSKD RKPNTNSGGSSLVFGNEEVPLEPKSDSSRLSPSFIASTKNCNLSSRSFCSENGTTSLN SSSLPIGRALQVDDSLLSKPSSLPIPVGHSIGSLSAHEIELSEDYTCIISHGPNPKTT HIFGDCILECHNTELTNFDKKAEPETKVSQLDKSPETSTPYPSDEFLSFCYSCQKKLE KDEDIYIGEKAFCSFDCRSEEIFAEEMEKTCNNSFNGSPEQSDDEDLFLMAMDDRSIN HESWIAKHRV" CDS complement(join(17485669..17485724,17485862..17485992, 17486082..17487109)) /locus_tag="TCM_028685" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 3" /protein_id="EOY26719.1" /db_xref="Phytozome:POPTR_0001s17990.1" /db_xref="TAIR:AT5G11460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEL0" /translation="MDGNVMADPDSESYFQSDTLGLRHISSSLFNIPGFLVGFSTKGS SDSDMVRSPTSPLDLRVFANFSNPFSVRSPRSSSQSGYQKKWDCSKMGLGIVNLLADE IKSDGEDLDSPKRKNIIFGPQVKTKFPSSSRYSHEFLGNSMKSNSLPRNYIISQLSKD RKPNTNSGGSSLVFGNEEVPLEPKSDSSRLSPSFIASTKNCNLSSRSFCSENGTTSLN SSSLPIGRALQVDDSLLSKPSSLPIPVGHSIGSLSAHEIELSEDYTCIISHGPNPKTT HIFGDCILECHNTELTNFDKKAEPETKVSQLDKSPETSTPYPSDEFLSFCYSCQKKLE KDEDIYMYRGEKAFCSFDCRSEEIFAEEMEKTCNNSFNGSPEQSDDEDLFLMAMDDRS INHESWIAKHRV" mRNA complement(join(17485696..17485724,17485862..17487132)) /locus_tag="TCM_028685" /product="Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g01720.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17990.1" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc691t6; alternateUTRof:Thecc1EG028685t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc690t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3867t5" mRNA complement(join(17485707..17487192,17488354..17488375)) /locus_tag="TCM_028685" /product="Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g01720.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17990.1" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.36 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11326t00001; alternateUTRof:Thecc1EG028685t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc690t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3867t5" CDS complement(join(17485715..17485724,17485846..17485992, 17486088..17487109)) /locus_tag="TCM_028685" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 4" /protein_id="EOY26720.1" /db_xref="Phytozome:POPTR_0001s17990.1" /db_xref="TAIR:AT5G11460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEL0" /translation="MDGNVMADPDSESYFQSDTLGLRHISSSLFNIPGFLVGFSTKGS SDSDMVRSPTSPLDLRVFANFSNPFSVRSPRSSSQSGYQKKWDCSKMGLGIVNLLADE IKSDGEDLDSPKRKNIIFGPQVKTKFPSSSRYSHEFLGNSMKSNSLPRNYIISQLSKD RKPNTNSGGSSLVFGNEEVPLEPKSDSSRLSPSFIASTKNCNLSSRSFCSENGTTSLN SSSLPIGRALQVDDSLLSKPSSLPIPVGHSIGSLSAHEIELSEDYTCIISHGPNPKTT HIFGDCILECHNTELTNFDKKAEPETKVSQLDKSPETSTPYPSDEFLSFCYSCQKKLE KDEDIYIGEKAFCSFDCRSEEIFAEEMEKTCNNSFNGSPEQSDDEDLFLMGMPINIHG " CDS complement(join(17485715..17485724,17485846..17485992, 17486082..17487109)) /locus_tag="TCM_028685" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 2" /protein_id="EOY26718.1" /db_xref="Phytozome:POPTR_0001s17990.1" /db_xref="TAIR:AT5G11460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEL0" /translation="MDGNVMADPDSESYFQSDTLGLRHISSSLFNIPGFLVGFSTKGS SDSDMVRSPTSPLDLRVFANFSNPFSVRSPRSSSQSGYQKKWDCSKMGLGIVNLLADE IKSDGEDLDSPKRKNIIFGPQVKTKFPSSSRYSHEFLGNSMKSNSLPRNYIISQLSKD RKPNTNSGGSSLVFGNEEVPLEPKSDSSRLSPSFIASTKNCNLSSRSFCSENGTTSLN SSSLPIGRALQVDDSLLSKPSSLPIPVGHSIGSLSAHEIELSEDYTCIISHGPNPKTT HIFGDCILECHNTELTNFDKKAEPETKVSQLDKSPETSTPYPSDEFLSFCYSCQKKLE KDEDIYMYRGEKAFCSFDCRSEEIFAEEMEKTCNNSFNGSPEQSDDEDLFLMGMPINI HG" CDS complement(17486027..17487109) /locus_tag="TCM_028685" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 7" /protein_id="EOY26723.1" /db_xref="Phytozome:POPTR_0001s17990.1" /db_xref="TAIR:AT5G11460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEL0" /translation="MDGNVMADPDSESYFQSDTLGLRHISSSLFNIPGFLVGFSTKGS SDSDMVRSPTSPLDLRVFANFSNPFSVRSPRSSSQSGYQKKWDCSKMGLGIVNLLADE IKSDGEDLDSPKRKNIIFGPQVKTKFPSSSRYSHEFLGNSMKSNSLPRNYIISQLSKD RKPNTNSGGSSLVFGNEEVPLEPKSDSSRLSPSFIASTKNCNLSSRSFCSENGTTSLN SSSLPIGRALQVDDSLLSKPSSLPIPVGHSIGSLSAHEIELSEDYTCIISHGPNPKTT HIFGDCILECHNTELTNFDKKAEPETKVSQLDKSPETSTPYPSDEFLSFCYSCQKKLE KDEDIYMYRFIQFRSLCCFYFSCILF" CDS complement(17486027..17487109) /locus_tag="TCM_028685" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 7" /protein_id="EOY26724.1" /db_xref="Phytozome:POPTR_0001s17990.1" /db_xref="TAIR:AT5G11460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEL0" /translation="MDGNVMADPDSESYFQSDTLGLRHISSSLFNIPGFLVGFSTKGS SDSDMVRSPTSPLDLRVFANFSNPFSVRSPRSSSQSGYQKKWDCSKMGLGIVNLLADE IKSDGEDLDSPKRKNIIFGPQVKTKFPSSSRYSHEFLGNSMKSNSLPRNYIISQLSKD RKPNTNSGGSSLVFGNEEVPLEPKSDSSRLSPSFIASTKNCNLSSRSFCSENGTTSLN SSSLPIGRALQVDDSLLSKPSSLPIPVGHSIGSLSAHEIELSEDYTCIISHGPNPKTT HIFGDCILECHNTELTNFDKKAEPETKVSQLDKSPETSTPYPSDEFLSFCYSCQKKLE KDEDIYMYRFIQFRSLCCFYFSCILF" CDS complement(17486027..17487109) /locus_tag="TCM_028685" /note="encoded by transcript variant 9; alternatively spliced" /codon_start=1 /product="Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 7" /protein_id="EOY26725.1" /db_xref="Phytozome:POPTR_0001s17990.1" /db_xref="TAIR:AT5G11460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEL0" /translation="MDGNVMADPDSESYFQSDTLGLRHISSSLFNIPGFLVGFSTKGS SDSDMVRSPTSPLDLRVFANFSNPFSVRSPRSSSQSGYQKKWDCSKMGLGIVNLLADE IKSDGEDLDSPKRKNIIFGPQVKTKFPSSSRYSHEFLGNSMKSNSLPRNYIISQLSKD RKPNTNSGGSSLVFGNEEVPLEPKSDSSRLSPSFIASTKNCNLSSRSFCSENGTTSLN SSSLPIGRALQVDDSLLSKPSSLPIPVGHSIGSLSAHEIELSEDYTCIISHGPNPKTT HIFGDCILECHNTELTNFDKKAEPETKVSQLDKSPETSTPYPSDEFLSFCYSCQKKLE KDEDIYMYRFIQFRSLCCFYFSCILF" misc_feature complement(join(17487104..17487192,17487302..17488379)) /locus_tag="TCM_028685" /note="Gene fragment of Thecc1EG028685t1; dbxref gnl|CacaoGD|Thecc1EG028685t1; quality class is mediumpartial-partof is thecc1eg028685t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc642t10; dbxref CacaoGD:Thecc1EG028686t1" gene 17492345..17494090 /locus_tag="TCM_028688" /note="dbxref CacaoGD:Thecc1EG028688" mRNA 17492345..17494090 /locus_tag="TCM_028688" /product="Alcohol dehydrogenase transcription factor Myb/SANT-like family protein" /inference="alignment:exonerate- protein:2:ricco:29872.m000548" /inference="similar to AA sequence:ricco:29872.m000548" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Newbler:10:TSA:cgbaL_g05136t00001" CDS 17492777..17493970 /locus_tag="TCM_028688" /note="dbxref ricco:29872.m000548" /codon_start=1 /product="Alcohol dehydrogenase transcription factor Myb/SANT-like family protein" /protein_id="EOY26726.1" /db_xref="TAIR:AT3G24490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HX15" /translation="MDDIEDDARYPPNPYGVTHQQGYGSLNRQKLPVRNAPYARPIVN QYVDDDEDEEEEEDEEDLGEEEENHNQNNGVRYVGKDMDDDDDDDELDEDEDDDDEGG DKQKGYNRKSDEVDLERHPKKRKLKSLVSSYEFAPRVPAAAVAATSVPKPSYGGRNSL TDWTERETFVLLDAWGDRFLQRGRKSLRSEEWQDVAERVSEVSKIERTDTQCRNRLDT LKKKYKKEKAMLAETGATTSKWVYFRKMDMLMSTPPQQGGLSCGLDSGEYVFMNPRVY LNRANGLDEMRDSPANSESADGEEDISDGLPPKKRRFGRQSDEGSSFRLLADSIQKFS DIYEKIENSKRQQMLELEKMRMDFHRELEMQKRQIMERAQAEIAKIQQGDDEENDVSA ENASE" gene complement(17495397..17496752) /locus_tag="TCM_028689" /note="dbxref CacaoGD:Thecc1EG028689" mRNA complement(join(17495397..17495845,17495941..17496064, 17496197..17496299,17496426..17496576,17496700..17496752)) /locus_tag="TCM_028689" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage" gene complement(17495405..17501361) /locus_tag="TCM_028690" /note="dbxref CacaoGD:Thecc1EG028690" mRNA complement(join(17495405..17496213,17496426..17496576, 17497488..17499333,17499499..17499625,17499993..17500261, 17501016..17501361)) /locus_tag="TCM_028690" /product="Pentatricopeptide repeat (PPR-like) superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05950" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017111001" /inference="similar to AA sequence:Phytozome:GSVIVT01017111001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc666t8; alternateUTRof:Thecc1EG028690t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3727t1" mRNA complement(join(17495415..17496064,17496195..17496337, 17496426..17496576,17497488..17499333,17499499..17499625, 17499993..17500222)) /locus_tag="TCM_028690" /product="Pentatricopeptide repeat (PPR-like) superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017111001" /inference="similar to AA sequence:Phytozome:GSVIVT01017111001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3727t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3727t1" CDS complement(join(17495639..17495845,17495941..17496064, 17496197..17496299,17496426..17496492)) /locus_tag="TCM_028689" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26727.1" /translation="MALQMMVMEESRNRKNAVVEGCGSFTAKLLEVEYQPYEDEMMKR RLLMLSSLPSLRRYTEMVDLPFHLAHPINSYVEANISADPKFDHIVLAAKQKIMLRPG GERKNSSRIAPTNINSSCLASLCETAEALDSECRKTWVTFVKKHIHHAENRTVKVGVK EIKGEN" mRNA complement(join(17496041..17496064,17496197..17496576, 17497488..17499333,17499499..17499625,17501016..17501361)) /locus_tag="TCM_028690" /product="Pentatricopeptide repeat (PPR-like) superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05950" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017111001" /inference="similar to AA sequence:Phytozome:GSVIVT01017111001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc666t1; alternateUTRof:Thecc1EG028690t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3727t1" mRNA complement(join(17496041..17496064,17496197..17496341, 17496426..17496576,17497488..17499333,17499499..17499625, 17499993..17500261,17501016..17501361)) /locus_tag="TCM_028690" /product="Pentatricopeptide repeat (PPR-like) superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05950" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017111001" /inference="similar to AA sequence:Phytozome:GSVIVT01017111001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc666t2; alternateUTRof:Thecc1EG028690t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3727t1" mRNA complement(join(17496041..17496064,17496197..17496576, 17497488..17499333,17499499..17499625,17499993..17500261, 17501016..17501361)) /locus_tag="TCM_028690" /product="Pentatricopeptide repeat (PPR-like) superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05950" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017111001" /inference="similar to AA sequence:Phytozome:GSVIVT01017111001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc666t9; alternateUTRof:Thecc1EG028690t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3727t1" mRNA complement(join(17496194..17496336,17496426..17496576, 17497488..17499333,17499499..17499625,17499993..17500261, 17501016..17501361)) /locus_tag="TCM_028690" /product="Pentatricopeptide repeat (PPR-like) superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05950" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017111001" /inference="similar to AA sequence:Phytozome:GSVIVT01017111001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc618t1; alternateUTRof:Thecc1EG028690t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3727t1" CDS complement(join(17497505..17499333,17499499..17499580)) /locus_tag="TCM_028690" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR-like) superfamily protein isoform 1" /protein_id="EOY26728.1" /db_xref="Phytozome:GSVIVT01017111001" /db_xref="TAIR:AT3G16010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LW84" /translation="MKTIMPSSALRRSISTLSHLCEPIKQTENEIVQMFQLPSPKKEA QDLAVKRKKPSVRTLDERFIRILKIFKWGSDAEKALEVLKLKVDQRLVREVLMIDVEI NVKIQFFKWAGKRRNFEHDSTTYMTLIHCLDEAGLVGEMWKTIQEMLRSTCAIGPAEL SEIVRILGKAKMVNKALSIFYQIKCRKCKPTSSTYNNIILMLMQEGHHEKVHELYNEM CNEGNCLPDTVTYSALISTFSKLGRHDSAIRLFEEMKENGLQPTSKIYTTLIKIYFKL GETWKALGLVQEMKGKGCKPTVFTYTELIKGLGKAGRVQDAYGIFMNMLKEGGKPDVV LINNMINILGKAGRLEDAFKLFNKMKSWQCIPNVVTYNTVIKALFDSKAPSSEASLWF EKMKADGVVPSSFTYSILIDGFCKTNKVEKALLLLEEMDERGFPPCPAAYCSLINSLG KAKRYEAANELFQELKENCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLGCNPD VYAYNALMSGMVRAGMINEAHSLLRTMEENGCAPDLNSHNIILNGLARTGGPRRAMEM FMKMENSNIKPDAVSYNTVLGCLSRAGMLEEAAKLMKEMKARGFEYDLITYSSILEAV GKIDEDRSLSTF" CDS complement(join(17497505..17499333,17499499..17499580)) /locus_tag="TCM_028690" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR-like) superfamily protein isoform 1" /protein_id="EOY26729.1" /db_xref="Phytozome:GSVIVT01017111001" /db_xref="TAIR:AT3G16010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LW84" /translation="MKTIMPSSALRRSISTLSHLCEPIKQTENEIVQMFQLPSPKKEA QDLAVKRKKPSVRTLDERFIRILKIFKWGSDAEKALEVLKLKVDQRLVREVLMIDVEI NVKIQFFKWAGKRRNFEHDSTTYMTLIHCLDEAGLVGEMWKTIQEMLRSTCAIGPAEL SEIVRILGKAKMVNKALSIFYQIKCRKCKPTSSTYNNIILMLMQEGHHEKVHELYNEM CNEGNCLPDTVTYSALISTFSKLGRHDSAIRLFEEMKENGLQPTSKIYTTLIKIYFKL GETWKALGLVQEMKGKGCKPTVFTYTELIKGLGKAGRVQDAYGIFMNMLKEGGKPDVV LINNMINILGKAGRLEDAFKLFNKMKSWQCIPNVVTYNTVIKALFDSKAPSSEASLWF EKMKADGVVPSSFTYSILIDGFCKTNKVEKALLLLEEMDERGFPPCPAAYCSLINSLG KAKRYEAANELFQELKENCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLGCNPD VYAYNALMSGMVRAGMINEAHSLLRTMEENGCAPDLNSHNIILNGLARTGGPRRAMEM FMKMENSNIKPDAVSYNTVLGCLSRAGMLEEAAKLMKEMKARGFEYDLITYSSILEAV GKIDEDRSLSTF" CDS complement(join(17497505..17499333,17499499..17499580)) /locus_tag="TCM_028690" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR-like) superfamily protein isoform 1" /protein_id="EOY26730.1" /db_xref="Phytozome:GSVIVT01017111001" /db_xref="TAIR:AT3G16010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LW84" /translation="MKTIMPSSALRRSISTLSHLCEPIKQTENEIVQMFQLPSPKKEA QDLAVKRKKPSVRTLDERFIRILKIFKWGSDAEKALEVLKLKVDQRLVREVLMIDVEI NVKIQFFKWAGKRRNFEHDSTTYMTLIHCLDEAGLVGEMWKTIQEMLRSTCAIGPAEL SEIVRILGKAKMVNKALSIFYQIKCRKCKPTSSTYNNIILMLMQEGHHEKVHELYNEM CNEGNCLPDTVTYSALISTFSKLGRHDSAIRLFEEMKENGLQPTSKIYTTLIKIYFKL GETWKALGLVQEMKGKGCKPTVFTYTELIKGLGKAGRVQDAYGIFMNMLKEGGKPDVV LINNMINILGKAGRLEDAFKLFNKMKSWQCIPNVVTYNTVIKALFDSKAPSSEASLWF EKMKADGVVPSSFTYSILIDGFCKTNKVEKALLLLEEMDERGFPPCPAAYCSLINSLG KAKRYEAANELFQELKENCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLGCNPD VYAYNALMSGMVRAGMINEAHSLLRTMEENGCAPDLNSHNIILNGLARTGGPRRAMEM FMKMENSNIKPDAVSYNTVLGCLSRAGMLEEAAKLMKEMKARGFEYDLITYSSILEAV GKIDEDRSLSTF" CDS complement(join(17497505..17499333,17499499..17499580)) /locus_tag="TCM_028690" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR-like) superfamily protein isoform 1" /protein_id="EOY26731.1" /db_xref="Phytozome:GSVIVT01017111001" /db_xref="TAIR:AT3G16010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LW84" /translation="MKTIMPSSALRRSISTLSHLCEPIKQTENEIVQMFQLPSPKKEA QDLAVKRKKPSVRTLDERFIRILKIFKWGSDAEKALEVLKLKVDQRLVREVLMIDVEI NVKIQFFKWAGKRRNFEHDSTTYMTLIHCLDEAGLVGEMWKTIQEMLRSTCAIGPAEL SEIVRILGKAKMVNKALSIFYQIKCRKCKPTSSTYNNIILMLMQEGHHEKVHELYNEM CNEGNCLPDTVTYSALISTFSKLGRHDSAIRLFEEMKENGLQPTSKIYTTLIKIYFKL GETWKALGLVQEMKGKGCKPTVFTYTELIKGLGKAGRVQDAYGIFMNMLKEGGKPDVV LINNMINILGKAGRLEDAFKLFNKMKSWQCIPNVVTYNTVIKALFDSKAPSSEASLWF EKMKADGVVPSSFTYSILIDGFCKTNKVEKALLLLEEMDERGFPPCPAAYCSLINSLG KAKRYEAANELFQELKENCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLGCNPD VYAYNALMSGMVRAGMINEAHSLLRTMEENGCAPDLNSHNIILNGLARTGGPRRAMEM FMKMENSNIKPDAVSYNTVLGCLSRAGMLEEAAKLMKEMKARGFEYDLITYSSILEAV GKIDEDRSLSTF" CDS complement(join(17497505..17499333,17499499..17499580)) /locus_tag="TCM_028690" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR-like) superfamily protein isoform 1" /protein_id="EOY26732.1" /db_xref="Phytozome:GSVIVT01017111001" /db_xref="TAIR:AT3G16010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LW84" /translation="MKTIMPSSALRRSISTLSHLCEPIKQTENEIVQMFQLPSPKKEA QDLAVKRKKPSVRTLDERFIRILKIFKWGSDAEKALEVLKLKVDQRLVREVLMIDVEI NVKIQFFKWAGKRRNFEHDSTTYMTLIHCLDEAGLVGEMWKTIQEMLRSTCAIGPAEL SEIVRILGKAKMVNKALSIFYQIKCRKCKPTSSTYNNIILMLMQEGHHEKVHELYNEM CNEGNCLPDTVTYSALISTFSKLGRHDSAIRLFEEMKENGLQPTSKIYTTLIKIYFKL GETWKALGLVQEMKGKGCKPTVFTYTELIKGLGKAGRVQDAYGIFMNMLKEGGKPDVV LINNMINILGKAGRLEDAFKLFNKMKSWQCIPNVVTYNTVIKALFDSKAPSSEASLWF EKMKADGVVPSSFTYSILIDGFCKTNKVEKALLLLEEMDERGFPPCPAAYCSLINSLG KAKRYEAANELFQELKENCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLGCNPD VYAYNALMSGMVRAGMINEAHSLLRTMEENGCAPDLNSHNIILNGLARTGGPRRAMEM FMKMENSNIKPDAVSYNTVLGCLSRAGMLEEAAKLMKEMKARGFEYDLITYSSILEAV GKIDEDRSLSTF" CDS complement(join(17497505..17499333,17499499..17499580)) /locus_tag="TCM_028690" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR-like) superfamily protein isoform 1" /protein_id="EOY26733.1" /db_xref="Phytozome:GSVIVT01017111001" /db_xref="TAIR:AT3G16010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LW84" /translation="MKTIMPSSALRRSISTLSHLCEPIKQTENEIVQMFQLPSPKKEA QDLAVKRKKPSVRTLDERFIRILKIFKWGSDAEKALEVLKLKVDQRLVREVLMIDVEI NVKIQFFKWAGKRRNFEHDSTTYMTLIHCLDEAGLVGEMWKTIQEMLRSTCAIGPAEL SEIVRILGKAKMVNKALSIFYQIKCRKCKPTSSTYNNIILMLMQEGHHEKVHELYNEM CNEGNCLPDTVTYSALISTFSKLGRHDSAIRLFEEMKENGLQPTSKIYTTLIKIYFKL GETWKALGLVQEMKGKGCKPTVFTYTELIKGLGKAGRVQDAYGIFMNMLKEGGKPDVV LINNMINILGKAGRLEDAFKLFNKMKSWQCIPNVVTYNTVIKALFDSKAPSSEASLWF EKMKADGVVPSSFTYSILIDGFCKTNKVEKALLLLEEMDERGFPPCPAAYCSLINSLG KAKRYEAANELFQELKENCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLGCNPD VYAYNALMSGMVRAGMINEAHSLLRTMEENGCAPDLNSHNIILNGLARTGGPRRAMEM FMKMENSNIKPDAVSYNTVLGCLSRAGMLEEAAKLMKEMKARGFEYDLITYSSILEAV GKIDEDRSLSTF" gene complement(17501632..17507622) /locus_tag="TCM_028691" /note="dbxref CacaoGD:Thecc1EG028691" mRNA complement(join(17501632..17502766,17502968..17503098, 17503208..17503357,17503434..17503580,17503660..17503854, 17503964..17504185,17504278..17504373,17504520..17504741, 17505061..17506283,17507228..17507231)) /locus_tag="TCM_028691" /product="Heat shock protein 91 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046856t1" /inference="similar to AA sequence:ricco:29872.m000550" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16089t1" CDS complement(join(17502517..17502766,17502968..17503098, 17503208..17503357,17503434..17503580,17503660..17503854, 17503964..17504185,17504278..17504373,17504520..17504741, 17505061..17506230)) /locus_tag="TCM_028691" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29872.m000550; paralog of Thecc1EG046856t1" /codon_start=1 /product="Heat shock protein 91 isoform 1" /protein_id="EOY26734.1" /db_xref="TAIR:AT1G79930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q96269" /translation="MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAIVCFGEK QRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQRDLKSLPFSVTEGPDGYPLIH ARYLGEMKTFTPTQVLGMVLSDLKSIAEKNLNAAVVDCCIGIPVYFTDLQRRAVLDAA TIAGLHPLRLIHETTATALAYGIYKTDLPENEQLNVAFVDIGHASMQVCIAGFKKGQL KILAHSFDCSLGGRDFDEVLFQHFAAKFKEDYKIDVFQNARACIRLRAACEKLKKVLS ANPVAPLNIECLIDEKDVKGFIKREEFEQISVPILQRVKSPLEKALADAGLAVENVHT VEVVGSASRVPAMLKILTEFFGKEPRRTMNASECVAKGCALQCAILSPTFKVREFQVN ESFPLPISLSWKGSASDAQNEGAEQQQLVFPKGNSIPSVKAVTFHKTSTFSVDVQYSD VSELQVPAKISTYTIGPFPTIRSERPKLKVKVRLNLHGIVSLESATLLEEEEVEVPVS KEPVKEDTKMETDEIPSDAAAPCANETDVNMQDAKGTADAEGVENGVPESGDKPVQME TDTKVEAPKKKVKKTNVPVAELVYGAMFPADVQKAVEKEFEMALQDRIMEETKDKKNA VEAYVYDMRNKLSDKYHDFVTAPEKEEFTAKLQETEDWLYEDGEDETKGVYVAKLEEL KKQGDPIEERYKEYAERGTVIDQLAYCINSYREAAMSNDPKFDHIELAEKQNVLNECV EAEAWLREKKQQQDQLPKYATPVLLSADVRKKAEALDRFCRPIMTKPKPAKPATPETP ATPPPQGSEAPPQGADDNANPNASPNCNADPSENAPADSAEAPPASTEPMETDKSEST SATA" mRNA complement(join(17503752..17503775,17503964..17504185, 17504278..17504373,17504520..17504741,17505061..17506283, 17507228..17507622)) /locus_tag="TCM_028691" /product="Heat shock protein 91 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046856t1" /inference="similar to AA sequence:Phytozome:Glyma15g01750.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc120t5; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16089t1" CDS complement(join(17503758..17503775,17503964..17504185, 17504278..17504373,17504520..17504741,17505061..17506230)) /locus_tag="TCM_028691" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046856t1" /codon_start=1 /product="Heat shock protein 91 isoform 2" /protein_id="EOY26735.1" /db_xref="Phytozome:Glyma15g01750.1" /db_xref="TAIR:AT1G79930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q96269" /translation="MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAIVCFGEK QRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQRDLKSLPFSVTEGPDGYPLIH ARYLGEMKTFTPTQVLGMVLSDLKSIAEKNLNAAVVDCCIGIPVYFTDLQRRAVLDAA TIAGLHPLRLIHETTATALAYGIYKTDLPENEQLNVAFVDIGHASMQVCIAGFKKGQL KILAHSFDCSLGGRDFDEVLFQHFAAKFKEDYKIDVFQNARACIRLRAACEKLKKVLS ANPVAPLNIECLIDEKDVKGFIKREEFEQISVPILQRVKSPLEKALADAGLAVENVHT VEVVGSASRVPAMLKILTEFFGKEPRRTMNASECVAKGCALQCAILSPTFKVREFQVN ESFPLPISLSWKGSASDAQNEGAEQQQLVFPKGNSIPSVKAVTFHKTSTFSVDVQYSD VSELQVPAKISTYTIGPFPTIRSERPKLKVKVRLNLHGIVSLESATLLEEEEVEVPVS KEPVKEDTKMETDEIPSDAAAPCANETDVNMQDAKGTADAEGVENGVPESGDKPVQME TDTKMFKKQ" mobile_element 17510859..17510926 /note="source:CACAO_Mariner_E38_scaffold_2 1650 1725" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(17513293..17513355) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3855 3918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17513393..17516016) /note="source:CACAO_M_E50311_F328_scaffold_7 3291 5858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17516099..17516836) /note="source:CACAO_M_S_E14673_F3_scaffold_2 955 1693" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17516858..17518392) /note="source:scaffold_1_CACTA_0028 3050 4590" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17519699..17520708 /note="source:CACAO_Mariner_E38_scaffold_2 3336 4358" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 17520708..17528149 /note="source:CACAO_LINE_E1735_scaffold_6 1 7442" /mobile_element_type="retrotransposon:LINE/L1" gene complement(17524163..17525592) /locus_tag="TCM_028693" /note="dbxref CacaoGD:Thecc1EG028693" mRNA complement(17524163..17525592) /locus_tag="TCM_028693" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023027t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400021026" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage" CDS complement(17524613..17525206) /locus_tag="TCM_028693" /note="paralog of Thecc1EG023027t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26736.1" /db_xref="Phytozome:PGSC0003DMP400021026" /translation="MISALVWNVRGISSAVIQRRIKKLQLLHKMKTLVILEPMVDNSK ADFIRRKLGFEKVFKNCSQKIWLFHSVDLSCEVLLDQVQCLHVKLTMPWLEIPLLASF IFVKCTRSERLILWDCLRGLSANIHAPWIVGGDFNAIIRSGERMNGAAPHGGSMEDFA TALLDCGLMDGEYEGNPFTWTNNRMFQRLDRMVYNHH" gene 17528175..17536137 /locus_tag="TCM_028695" /note="dbxref CacaoGD:Thecc1EG028695" mRNA join(17528175..17528362,17532199..17532684, 17535058..17536137) /locus_tag="TCM_028695" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s10800.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018581t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s02860.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete" mobile_element 17530733..17530796 /note="source:CACAO_M_E22186_F143_scaffold_3 9928 9991" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(17532582..17532684,17535058..17535407) /locus_tag="TCM_028695" /note="paralog of Thecc1EG018581t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26737.1" /db_xref="Phytozome:POPTR_0003s02860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H6Q4" /translation="MVREKPKTLQKCPSITEKCKIPPGQVQCKRITCSGDPSHLKDKN SELLSNLKCKKLTDFKWYKDMFMTRVMQRFDNNQPSWKKNFLTGLLTLLGKKVINQIK ETYKGILPYENLTYGELISFPQKERLKICQDLKLQKQIKKERKLYTKN" gene 17540437..17556152 /locus_tag="TCM_028696" /note="dbxref CacaoGD:Thecc1EG028696" mRNA join(17540437..17540758,17541176..17541432, 17543404..17543552,17544155..17544236,17544382..17544529, 17544637..17544793,17545127..17545410,17545560..17545605, 17546465..17546606,17546701..17546855,17547454..17547545, 17547635..17547733,17547828..17547896,17548700..17548786, 17549032..17549091,17549190..17549314,17550029..17550086, 17550155..17550260,17551041..17551103,17551846..17551913, 17552012..17552589,17554010..17554155,17555210..17556152) /locus_tag="TCM_028696" /product="Regulator of telomere elongation helicase 1 rtel1, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene05947" /inference="similar to AA sequence:ricco:29872.m000552" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b027755t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3833t5" mRNA join(17540437..17540758,17541176..17541432, 17543404..17543552,17544155..17544236,17544382..17544529, 17544637..17544793,17545127..17545410,17545560..17545605, 17546465..17546606,17546701..17546855,17547454..17547545, 17547635..17547733,17547828..17547896,17548700..17548786, 17549032..17549091,17549190..17549314,17550029..17550086, 17550155..17550260,17551041..17551103,17551846..17551913, 17552012..17552584,17554010..17554155,17555210..17556152) /locus_tag="TCM_028696" /product="Regulator of telomere elongation helicase 1 rtel1, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05947" /inference="similar to AA sequence:ricco:29872.m000552" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3833t5" CDS join(17540657..17540758,17541176..17541432, 17543404..17543552,17544155..17544236,17544382..17544529, 17544637..17544793,17545127..17545410,17545560..17545605, 17546465..17546606,17546701..17546855,17547454..17547545, 17547635..17547733,17547828..17547896,17548700..17548786, 17549032..17549091,17549190..17549314,17550029..17550086, 17550155..17550260,17551041..17551103,17551846..17551913, 17552012..17552584,17554010..17554155,17555210..17555300) /locus_tag="TCM_028696" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29872.m000552" /codon_start=1 /product="Regulator of telomere elongation helicase 1 rtel1, putative isoform 1" /protein_id="EOY26738.1" /db_xref="TAIR:AT1G79950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SQD1" /translation="MPTYKLRGIDVDFPFEAYDCQLVYMEKVIEALQKRCNALLESPT GTGKTLCLLCATLAWRKSLGGFSTGSSQIKSLFSGSQSDVGSSKSQPGNLPTIVYTSR THSQLRQVVQELRRSNYRPKMVVLGSREQLCIHDEVSLLHGKAQTNACRALCRKRQKR HCTHFPRVAEYMKNNPHIGDEPLDIEDLVNIGRRFGPCPYYVSRELHKVVDILFAPYN YLIDRDYRRSLNLEWHNSVLIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCVDL AVARREESNDKSRNPDNFAILRALLLKLQKRIAEVPIESKELGFTKPGPYIYELLADL NITHETASKLIDIIEEAAVLLEEDRQQDTKGSGCRLESIGNILKSIFRDKGNNHADYY RVHVQEAEVNATDIFRGKTSRILSWWCFNPGIAMQEFSKMGVASIVLTSGTLSPLDSF AQELKLDFPVRLENPHVISSDQIWAGVVPIGPSGRSFNSSYRNRDSPEYKQELGNAIV NFARIVPDGLLVFFPSYYLLDQCISYWKNMGNANSSTVWERICKFKKPVIEPRQSSLF PLAIEDYMSKLKDTSTSGAVFFAVCRGKVSEGLDFADYAGRAVVITGMPFATRTDPKV RLKREYLDLQTQSPREGCKMLKLLTGEEWYNQQASRAVNQAVGRVIRHRQDYGAIIFC DERFAHSNRQSQISLWIQPHIKCYTKFGDVVFTLTRFFRDGGSRSPTKLKFADHEKKD LSPSSATKTVPVEDIKESSSGSRREIQTAQPLDKSYLKLLPDLSTSMEQTHSKDKLSS HFEVKSSNNSSQLGRILPASLSCFTPCMYMKKLKRSSDLMVNEKKLSITGTGKMQYQN HDVIDSTGDLLLDRQQREEQHLESCSSKKCRVLPIELDTLQHDKSSNNYASDAQRSGP SDLPFIVSSVKHEKLQISGARSALNAKVHLLHKDDGAAGVLFSAEPCGAEETKGSAFL IQVKEKLSPTEYKEFVGFMKAMKSKVMKISNVLQSIVGLFSGPERLPLLERFKDYVPA KYQSLYEQYIETSKEMPDNQRN" CDS join(17540657..17540758,17541176..17541432, 17543404..17543552,17544155..17544236,17544382..17544529, 17544637..17544793,17545127..17545410,17545560..17545605, 17546465..17546606,17546701..17546855,17547454..17547545, 17547635..17547733,17547828..17547896,17548700..17548786, 17549032..17549091,17549190..17549314,17550029..17550086, 17550155..17550260,17551041..17551103,17551846..17551913, 17552012..17552589,17554010..17554061) /locus_tag="TCM_028696" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29872.m000552" /codon_start=1 /product="Regulator of telomere elongation helicase 1 rtel1, putative isoform 2" /protein_id="EOY26739.1" /db_xref="TAIR:AT1G79950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SQD1" /translation="MPTYKLRGIDVDFPFEAYDCQLVYMEKVIEALQKRCNALLESPT GTGKTLCLLCATLAWRKSLGGFSTGSSQIKSLFSGSQSDVGSSKSQPGNLPTIVYTSR THSQLRQVVQELRRSNYRPKMVVLGSREQLCIHDEVSLLHGKAQTNACRALCRKRQKR HCTHFPRVAEYMKNNPHIGDEPLDIEDLVNIGRRFGPCPYYVSRELHKVVDILFAPYN YLIDRDYRRSLNLEWHNSVLIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCVDL AVARREESNDKSRNPDNFAILRALLLKLQKRIAEVPIESKELGFTKPGPYIYELLADL NITHETASKLIDIIEEAAVLLEEDRQQDTKGSGCRLESIGNILKSIFRDKGNNHADYY RVHVQEAEVNATDIFRGKTSRILSWWCFNPGIAMQEFSKMGVASIVLTSGTLSPLDSF AQELKLDFPVRLENPHVISSDQIWAGVVPIGPSGRSFNSSYRNRDSPEYKQELGNAIV NFARIVPDGLLVFFPSYYLLDQCISYWKNMGNANSSTVWERICKFKKPVIEPRQSSLF PLAIEDYMSKLKDTSTSGAVFFAVCRGKVSEGLDFADYAGRAVVITGMPFATRTDPKV RLKREYLDLQTQSPREGCKMLKLLTGEEWYNQQASRAVNQAVGRVIRHRQDYGAIIFC DERFAHSNRQSQISLWIQPHIKCYTKFGDVVFTLTRFFRDGGSRSPTKLKFADHEKKD LSPSSATKTVPVEDIKESSSGSRREIQTAQPLDKSYLKLLPDLSTSMEQTHSKDKLSS HFEVKSSNNSSQLGRILPASLSCFTPCMYMKKLKRSSDLMVNEKKLSITGTGKMQYQN HDVIDSTGDLLLDRQQREEQHLESCSSKKCRVLPIELDTLQHDKSSNNYASDAQRSGP SDLPFIVSSVKHEKLQISGARSALNAKVHLLHKDDGAAGVLFSAEPCGAEETKGSAFL IQVKLRRNLVLQNIKNLWGL" gene complement(17556884..17558932) /locus_tag="TCM_028697" /note="dbxref CacaoGD:Thecc1EG028697" mRNA complement(17556884..17558932) /locus_tag="TCM_028697" /product="Ovate family protein 14, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18070.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s18070.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14832t00001" CDS complement(17557720..17558607) /locus_tag="TCM_028697" /codon_start=1 /product="Ovate family protein 14, putative" /protein_id="EOY26740.1" /db_xref="Phytozome:POPTR_0001s18070.1" /db_xref="TAIR:AT1G79960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEL7" /translation="MSKKLQKSLQDYLAKMKKPSPTTQFPSNSLSSSKKWTLKGCKHP KTLSFAVNHDRNDQGTCDNDDAATLSDVDRFLFENFKSLYIKDDNEEVNESRGVREDR EDHHQVRSPGGILFESPRFVDPPPDLCGSNRFFVATGLSSSLIEEARSSAVTNTTMST SEDVGSTSTSTSTNATANDSNSCGGDHTKCPSIPDECIAVLTYSPNPYDDFRRSMREM VEARLQHHSTIDWDFMEELLFCYLNLNDKKSYKFILSAFVDLIVTLRQNERKIPARSR NSKAVRDRRSRRTRYNNVT" mobile_element 17561388..17562114 /note="source:CACAO_M_E58601_F7_scaffold_9 8820 9547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17562718..17563766 /note="source:CACAO_M_E58601_F7_scaffold_9 9850 10875" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17563949..17565161 /note="source:CACAO_M_E49062_F90_scaffold_6 1 1213" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17568552..17568626) /note="source:CACAO_M_S_E83372_F14_scaffold_6 142 213" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17569859..17570749 /note="source:CACAO_M_E639_F17_scaffold_1 10906 11774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17570919..17571171) /note="source:CACAO_M_S_E15173_F4_scaffold_2 1602 1867" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17571172..17572652 /note="source:CACAO_M_E49063_F215_scaffold_6 1 1481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17572653..17573341) /note="source:CACAO_M_E49885_F60_scaffold_7 749 1443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17573350..17573657) /note="source:CACAO_M_S_E15173_F4_scaffold_2 5267 5556" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17573658..17574133 /note="source:scaffold_6_CACTA_0702 12995 13461" /mobile_element_type="transposon:TIR/CACTA" gene complement(17580154..17581352) /locus_tag="TCM_028700" /note="dbxref CacaoGD:Thecc1EG028700" mRNA complement(17580154..17581352) /locus_tag="TCM_028700" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0021s00890.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030210t1" /inference="similar to AA sequence:ricco:29842.m003609" /note="quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1240t3_C2" CDS complement(17580952..17581284) /locus_tag="TCM_028700" /note="dbxref ricco:29842.m003609; paralog of Thecc1EG030210t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26741.1" /translation="MALLRRSYAYSKVDKEDPEEIIHRRAQFLIYKALEQADSRRKSS FLRIRLCRLKVKIGRRLKKLRKCALVCISAPRAGVYKQVIGQLKTWRRLFSLGGGTIS SLPRPLLA" gene complement(17582319..17585227) /locus_tag="TCM_028701" /note="dbxref CacaoGD:Thecc1EG028701" mRNA complement(join(17582319..17583112,17583627..17584714, 17584862..17585227)) /locus_tag="TCM_028701" /product="ATP binding cassette protein 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29842.m003610.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030209t1" /inference="similar to AA sequence:ricco:29842.m003610" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:PASA:2:TSA:puevd3b027760t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g01262t00001" mRNA complement(join(17582319..17583112,17583627..17585222)) /locus_tag="TCM_028701" /product="ATP binding cassette protein 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003610.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030209t1" /inference="similar to AA sequence:ricco:29842.m003610" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01262t00001" CDS complement(join(17582894..17583112,17583627..17584714, 17584862..17585066)) /locus_tag="TCM_028701" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003610; paralog of Thecc1EG030209t1" /codon_start=1 /product="ATP binding cassette protein 1 isoform 2" /protein_id="EOY26743.1" /db_xref="TAIR:AT4G04770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZS97" /translation="MASLLANGISSFTTQPTSDSTKFAKGFYQKLDSVKTMTQKPPNS RLFKVRADVGFDSQTLTSDPSSSSEPDWMLEFRLNAYGKFLKMKEPKWSDNRYPPINF QDICYYSAPKKKPTLNSLDEADPELLKYFDRLGVSLNERNRLANVAVDAVLDSVSIAT THRKTLEKAGVIFCSISEAIREYPDLVRKYLGRVVPIEDNYYAALNSAVFSDGSFCYI PKDTKCPMPISTYFRINALETGQFERTLIVADEGSFVEYLEGCTAPSYERNQLHAAVV ELYCAKGAEIKYSTVQNWYAGDEEGKGGIYNFVTKRGLCAGDHSKISWTQVETGSAIT WKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGENTRSRIISKGISAGNSRN CYRGLVQVQSKAENARNSSQCDSMLIGDNAAANTYPYIQVKNPSARVEHEASTSKIGE DQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG" CDS complement(join(17582894..17583112,17583627..17585066)) /locus_tag="TCM_028701" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003610; paralog of Thecc1EG030209t1" /codon_start=1 /product="ATP binding cassette protein 1 isoform 1" /protein_id="EOY26742.1" /db_xref="TAIR:AT4G04770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZS97" /translation="MASLLANGISSFTTQPTSDSTKFAKGFYQKLDSVKTMTQKPPNS RLFKVRADVGFDSQTLTSDPSSSSGKSYDEKIQEILRNRDYNKKFGFTMDIDSFSIPK GLCKETIRLISSLKEEPDWMLEFRLNAYGKFLKMKEPKWSDNRYPPINFQDICYYSAP KKKPTLNSLDEADPELLKYFDRLGVSLNERNRLANVAVDAVLDSVSIATTHRKTLEKA GVIFCSISEAIREYPDLVRKYLGRVVPIEDNYYAALNSAVFSDGSFCYIPKDTKCPMP ISTYFRINALETGQFERTLIVADEGSFVEYLEGCTAPSYERNQLHAAVVELYCAKGAE IKYSTVQNWYAGDEEGKGGIYNFVTKRGLCAGDHSKISWTQVETGSAITWKYPSVVLE GDDTVGEFYSVALTNNYQQADTGTKMIHKGENTRSRIISKGISAGNSRNCYRGLVQVQ SKAENARNSSQCDSMLIGDNAAANTYPYIQVKNPSARVEHEASTSKIGEDQLFYFQQR GIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG" gene 17585526..17589062 /locus_tag="TCM_028702" /note="dbxref CacaoGD:Thecc1EG028702" mRNA join(17585526..17585671,17587350..17589062) /locus_tag="TCM_028702" /product="AT hook motif-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003611" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030208t2" /inference="similar to AA sequence:ricco:29842.m003611" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3831t1; alternateUTRof:Thecc1EG028702t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3831t2" mRNA join(17585539..17585671,17586433..17586553, 17587350..17589062) /locus_tag="TCM_028702" /product="AT hook motif-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003611" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030208t2" /inference="similar to AA sequence:ricco:29842.m003611" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3831t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3831t2" CDS 17587425..17588714 /locus_tag="TCM_028702" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003611; paralog of Thecc1EG030208t2" /codon_start=1 /product="AT hook motif-containing protein, putative isoform 1" /protein_id="EOY26744.1" /db_xref="TAIR:AT5G52890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXM9" /translation="MSSQNQGASLCPSADPPMKRKRGRPRKDESVQGESTPATPASDI LKKNEQSVGTSNPASDQMVGQMVSGVIEGSFDAGYLLNVKVGDTNTHLRGVVFLPGRF TPITAANDVAPHAKMYKRKEIPIPFVNPQSQHHAVGPPSGKSEKAVEHKNGAPNLPDQ GLHTRLQSGATAASESKSASILIPPASNLSINDTSLPLGQKVLQEQILGSRLQNDKAV GQDQSLEGFEAFKLMKAPNIDVETPKTSEPVSATFTATLPATETVNLKPQVEHQALSS DLKPQELVHDDVKGIDLGIVQTPKFPEPEPQAMACEPNGIKMFEKQASSRQDIDISQD NQLEHAKKIICGDDISHMDGLSASDTATMTLTVPCSASTSLPIMIFGAETIPSESKPA AEESDVPRRVVPEVSSSSMAADTNSVECNAKDAIPPA" CDS 17587425..17588714 /locus_tag="TCM_028702" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003611; paralog of Thecc1EG030208t2" /codon_start=1 /product="AT hook motif-containing protein, putative isoform 1" /protein_id="EOY26745.1" /db_xref="TAIR:AT5G52890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXM9" /translation="MSSQNQGASLCPSADPPMKRKRGRPRKDESVQGESTPATPASDI LKKNEQSVGTSNPASDQMVGQMVSGVIEGSFDAGYLLNVKVGDTNTHLRGVVFLPGRF TPITAANDVAPHAKMYKRKEIPIPFVNPQSQHHAVGPPSGKSEKAVEHKNGAPNLPDQ GLHTRLQSGATAASESKSASILIPPASNLSINDTSLPLGQKVLQEQILGSRLQNDKAV GQDQSLEGFEAFKLMKAPNIDVETPKTSEPVSATFTATLPATETVNLKPQVEHQALSS DLKPQELVHDDVKGIDLGIVQTPKFPEPEPQAMACEPNGIKMFEKQASSRQDIDISQD NQLEHAKKIICGDDISHMDGLSASDTATMTLTVPCSASTSLPIMIFGAETIPSESKPA AEESDVPRRVVPEVSSSSMAADTNSVECNAKDAIPPA" mobile_element complement(17595119..17596527) /note="source:CACAO_M_E4676_F9_scaffold_2 1 1418" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17597645..17600605) /note="source:CACAO_M_S_E31892_F7_scaffold_3 3 2995" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17604373..17605022 /note="source:scaffold_6_CACTA_0702 3112 3767" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17608877..17609228 /note="source:CACAO_M_E43590_F7_scaffold_5 6592 6946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17609329..17610209 /note="source:CACAO_M_E43590_F7_scaffold_5 7411 8280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17611147..17611673 /note="source:CACAO_M_E22132_F44_scaffold_3 2428 2947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17616801..17619768 /note="source:CACAO_M_E49067_F72_scaffold_6 1 2968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17622472..17625457 /note="source:CACAO_M_S_E84433_F33_scaffold_6 1 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17625483..17625541 /note="source:CACAO_M_E44709_F9_scaffold_6 19469 19530" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17625534..17629842 /note="source:INTACT392_F9_scaffold_3-int 559 4862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17629843..17632953 /note="source:CACAO_M_S_E84434_F51_scaffold_6 1 3111" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17632954..17636420 /note="source:INTACT85_F9_scaffold_4-int 7813 11304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17636421..17640060) /note="source:CACAO_M_E53201_F9_scaffold_8 1 3631" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17640712..17641265 /note="source:CACAO_M_E33933_F9_scaffold_4 14422 14977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17641873..17642370 /note="source:CACAO_M_E59650_F290_scaffold_9 3960 4457" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17643434..17643813) /note="source:CACAO_M_E22186_F143_scaffold_3 4993 5372" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17644340..17647394) /note="source:INTACT1327F_F381_scaffold_8-int 6069 7967" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17651644..17652237 /note="source:scaffold_4_CACTA_0495 369 953" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17656189..17657137) /note="source:CACAO_M_E33933_F9_scaffold_4 14522 15470" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17659164..17659243) /note="source:CACAO_M_E33933_F9_scaffold_4 14414 14493" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17659246..17659452 /note="source:scaffold_4_CACTA_0495 987 1182" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17659736..17660023 /note="source:scaffold_4_CACTA_0495 831 1147" /mobile_element_type="transposon:TIR/CACTA" gene 17660643..17661063 /locus_tag="TCM_028707" /note="dbxref CacaoGD:Thecc1EG028707" mRNA join(17660643..17660885,17661040..17661063) /locus_tag="TCM_028707" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc677t1_C2" gene 17660666..17664547 /locus_tag="TCM_028708" /note="dbxref CacaoGD:Thecc1EG028708" mRNA join(17660666..17660885,17663066..17663080, 17663207..17663413,17663570..17663647,17663743..17663794, 17664219..17664410) /locus_tag="TCM_028708" /product="Mediator 21 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400028793" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400028793" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15957t1" CDS join(17660678..17660885,17661040..17661056) /locus_tag="TCM_028707" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26746.1" /translation="MTQILIPNPSPMSVAHYFTKFSLLRCPFWCCDRRLKLPLPWCAE GPCFAPQTLHFLCVLIYSFGASGAEVCDNV" gene <17662616..17662930 /locus_tag="TCM_028711" /note="dbxref CacaoGD:Thecc1EG028711" mRNA join(<17662616..17662645,17662760..>17662901) /locus_tag="TCM_028711" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is none, intron is medium, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc487t12_C2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1205t3" CDS join(<17662618..17662645,17662760..>17662899) /locus_tag="TCM_028711" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY26749.1" /translation="CKDETFKTKEWFRFFLIFFAGISRVFSSFRFLSLPFLKCRLVAF KAAPEVALFATS" mRNA join(17663105..17663413,17663570..17663647, 17663743..17663794,17664224..17664547) /locus_tag="TCM_028708" /product="Mediator of RNA polymerase II transcription subunit 21 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400028793" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400028793" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1179t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15957t1" CDS join(17663207..17663413,17663570..17663647, 17663743..17663794,17664219..17664295) /locus_tag="TCM_028708" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Mediator 21 isoform 1" /protein_id="EOY26747.1" /db_xref="Phytozome:PGSC0003DMP400028793" /db_xref="TAIR:AT4G04780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0LU16" /translation="MDIISQLQEQVNAIAALAFNTFGSLQRDAPPVRLSPNYPEPPAN PTEDSANFPDQPKLMSAALVKAAKQFDALVAALPSSEGGEEAQLRRIAELQAENNAVG QELQKQLEAAEKELKQVQELFSQATDNCLNLKKPD" CDS join(17663207..17663413,17663570..17663647, 17663743..17663794,17664224..17664267) /locus_tag="TCM_028708" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Mediator of RNA polymerase II transcription subunit 21 isoform 2" /protein_id="EOY26748.1" /db_xref="Phytozome:PGSC0003DMP400028793" /db_xref="TAIR:AT4G04780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0LU16" /translation="MDIISQLQEQVNAIAALAFNTFGSLQRDAPPVRLSPNYPEPPAN PTEDSANFPDQPKLMSAALVKAAKQFDALVAALPSSEGGEEAQLRRIAELQAENNAVG QELQKQLEAAGIETGAGAVQSSNG" mobile_element 17666498..17667134 /note="source:INTACT459_F220_scaffold_4-int 6146 6784" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17667722..17667865 /note="source:CACAO_M_E11925_F316_scaffold_2 7804 7932" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17668367..17668489 /note="source:INTACT459_F220_scaffold_4-int 8484 8607" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17668886..17668924 /note="source:INTACT459_F220_scaffold_4-int 211 249" /mobile_element_type="retrotransposon:LTR/Copia" gene 17670155..17671417 /locus_tag="TCM_028712" /note="dbxref CacaoGD:Thecc1EG028712" mRNA join(17670155..17670302,17670446..17670539, 17670634..17670699,17670883..17671417) /locus_tag="TCM_028712" /product="Squamosa promoter binding protein-like 1, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004922t1" /inference="similar to AA sequence:ricco:30076.m004574" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage" CDS join(17670275..17670302,17670446..17670539, 17670634..17670699,17670883..17671336) /locus_tag="TCM_028712" /note="dbxref ricco:30076.m004574; paralog of Thecc1EG004922t1" /codon_start=1 /product="Squamosa promoter binding protein-like 1, putative" /protein_id="EOY26750.1" /db_xref="TAIR:AT2G47070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BWP7" /translation="MSPWSRSNSIVHYLALGSKQQTFVKSCVFAWRKLTAASIYRAFA FTTNMLGLRASSKSNSKLRKVSIDAWKSARDSTGSTPEDYARLSGHYSHIHLVQKKIN KRTGSGHAVVDIPGALTECSMNQKQNNESTSSFEIGRLELRSMQRHCKLCDQKLAYGC GTTSRSLVYRPAMLSMVAIAAVCVCVALLFKSCSVVLYVFRPFRWELLDYGTS" gene 17672585..17674025 /locus_tag="TCM_028713" /note="dbxref CacaoGD:Thecc1EG028713" mRNA join(17672585..17672714,17672920..17674025) /locus_tag="TCM_028713" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(17672664..17672714,17672920..17673069) /locus_tag="TCM_028713" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26751.1" /translation="MEVTILGHGHENGHEQLSNNSNEKSQKIVKKVNKEGQSRKDYVD PPPTLLVGMPQRLYGPSTNTTC" mobile_element complement(17673075..17673120) /note="source:CACAO_M_S_E89247_F225_scaffold_8 4000 4045" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17673235..17673516) /note="source:CACAO_M_S_E89247_F225_scaffold_8 4059 4335" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17673603..17673882) /note="source:CACAO_M_S_E89247_F225_scaffold_8 4059 4339" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17674111..17674512 /note="source:scaffold_10_CACTA_0137 5647 6052" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17674511..17675365) /note="source:CACAO_Again_on_E124_scaffold_5 250 1108" /mobile_element_type="transposon:TIR/hAT" mobile_element 17674898..17675702 /note="source:CACAO_Again_on_E207_scaffold_9 1072 1862" /mobile_element_type="transposon:TIR/hAT" mobile_element 17675703..17676145 /note="source:scaffold_4_CACTA_0502 4772 5200" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17676147..17676986 /note="source:CACAO_MITE88_scaffold_5 1 829" /mobile_element_type="transposon:TIR/MITE" mobile_element 17676961..17677048 /note="source:CACAO_M_E4783_F9_scaffold_2 11308 11384" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17678557..17678816 /note="source:CACAO_M_S_E89247_F225_scaffold_8 4073 4336" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17679657..17679792) /note="source:CACAO_on_E205_scaffold_7 4818 5186" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(17679793..17680074) /note="source:scaffold_5_CACTA_0614 6102 6361" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17680075..17680106) /note="source:CACAO_M_E58877_F5_scaffold_9 20347 20664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17680324..17680845) /note="source:CACAO_M_E49539_F76_scaffold_7 5077 5594" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17680512..17681995 /note="source:scaffold_2_CACTA_0252 1078 2480" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17680873..17684928) /note="source:INTACT1427F_F390_scaffold_9-int 12373 16643" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17684927..17694166 /note="source:CACAO_M_E3935_F390_scaffold_1 5092 14325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17693749..17694734) /note="source:CACAO_M_E12044_F76_scaffold_2 6694 7651" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17695006..17695523) /note="source:CACAO_M_E49539_F76_scaffold_7 5077 5591" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17695457..17696417 /note="source:scaffold_2_CACTA_0252 1262 2233" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17695602..17696787) /note="source:CACAO_M_E49539_F76_scaffold_7 3894 5062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17696888..17696945) /note="source:CACAO_M_E52694_F25_scaffold_8 2872 2929" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17696946..17696986) /note="source:CACAO_M_E49539_F76_scaffold_7 3103 3166" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17698851..17702455 /locus_tag="TCM_028718" /note="dbxref CacaoGD:Thecc1EG028718" mRNA join(17698851..17699342,17699916..17700110, 17701718..17702455) /locus_tag="TCM_028718" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30146.m003627" /inference="similar to AA sequence:Phytozome:POPTR_0003s05400.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc157t3" CDS join(17699171..17699342,17699916..17700110, 17701718..17702382) /locus_tag="TCM_028718" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26752.1" /db_xref="Phytozome:POPTR_0003s05400.1" /db_xref="TAIR:AT1G52343.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RQR3" /translation="MATSNERDERRARFSAKGLIRMSHITSGRTQSISSSSLPPLDHD HRPPTSHLFDQTNDAKKQSSDAQGEGARDERRKIAEERLNLTSHMRGQSQSNPQTLDH SALFSNYHQAPQIYLSDQISAGPVVAGDASSSSYLNHRGSYEISGANSLDVGGQAELK FQKQGTDKDAISALVVGERGELQPLQETSSLQRASSNLEPLQKPCRNQPNFFSSNRLN SCIIASERTRSFCALLIALFVLLSYIDYPLLGMNIVRSESIVASRPLYIILLTDLTVV LGQMFLDKKGDSEEAENKKAGSQNNRQSWAGAVKLLERGLVAYQTIRALFIDCSIYAV VVICGLSLM" gene complement(17702485..17708076) /locus_tag="TCM_028719" /note="dbxref CacaoGD:Thecc1EG028719" mRNA complement(join(17702485..17702525,17705604..17706086, 17708012..17708076)) /locus_tag="TCM_028719" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene05943" /inference="similar to AA sequence:Phytozome:POPTR_0003s05390.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1321t1" CDS complement(17705615..17706031) /locus_tag="TCM_028719" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26753.1" /db_xref="Phytozome:POPTR_0003s05390.1" /translation="MDPEALHSGQNKIYNHLFYRFSFTMELSKWCSSGTQDLRWSQGY AKSQYDRMHSINVLVTRSKLPRWRMLWRRLMREKKKIFDCSSSTRVHVSYDPYTYAQN FDQGLMSADPDDLSRSFSARFAVPSRVFEKSGCKLR" mobile_element 17707431..17707965 /note="source:INTACT687_F13_scaffold_3-int 1298 1830" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17707966..17708079 /note="source:scaffold_1_CACTA_0008 931 1535" /mobile_element_type="transposon:TIR/CACTA" gene complement(17708629..17709743) /locus_tag="TCM_028720" /note="dbxref CacaoGD:Thecc1EG028720" mRNA complement(17708629..17709743) /locus_tag="TCM_028720" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.36 coverage" CDS complement(17708949..17709167) /locus_tag="TCM_028720" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26754.1" /translation="MNPMDQSKQYIKGIDVDCDTQPMNPLDQSKQYITGIDVDRDTQP MNPTYQSKQYIIQYMDKKSVLGEGKKEN" gene complement(17710007..17738250) /locus_tag="TCM_028721" /note="dbxref CacaoGD:Thecc1EG028721" mRNA complement(join(17710007..17710169,17710244..17710448, 17710661..17710732,17711954..17712609)) /locus_tag="TCM_028721" /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene05943" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028725t4" /inference="similar to AA sequence:Phytozome:POPTR_0001s18090.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01021t00001; inference alignment:Newbler:10:TSA:cgbaP1_g00373t00002; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1286t7" mRNA complement(join(17710063..17710282,17710661..17710732, 17711954..17712609)) /locus_tag="TCM_028721" /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028725t4" /inference="similar to AA sequence:Phytozome:POPTR_0001s18090.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00373t00002; inference alignment:Newbler:10:TSA:cgbaP1_g00373t00002" CDS complement(join(17710277..17710282,17710661..17710732, 17711954..17712538)) /locus_tag="TCM_028721" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG028725t4" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein isoform 1" /protein_id="EOY26755.1" /db_xref="Phytozome:POPTR_0001s18090.1" /db_xref="TAIR:AT1G52330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GX09" /translation="MVFSKLEQPPPPEEPSSPCHYFTALPSQPPDQNYLVLPYYRPTL RWCGCRILCTASLVLLATSVYIFWPSDPEVKIVRMHVDRMQLHTIPIIALDISLLVTL KVRNSDVYSVDFTSLDVAVGYRGKMLGHVTSEHGHVRAWGSSYVQAELELNGVEVLSD VVYMLEDLARGTVPFDTVTEVAGWLGLSLFKFPLKARVSCEIVVNRTNQTIIRQNCYP MK" mRNA complement(join(17710351..17710529,17710661..17710732, 17711954..17712636,17738198..17738250)) /locus_tag="TCM_028721" /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene05943" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028725t4" /inference="similar to AA sequence:Phytozome:POPTR_0001s18090.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1286t5_C2; inference alignment:Newbler:10:TSA:cgbaP1_g00373t00002; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1286t7" CDS complement(join(17710356..17710448,17710661..17710732, 17711954..17712538)) /locus_tag="TCM_028721" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG028725t4" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein isoform 2" /protein_id="EOY26756.1" /db_xref="Phytozome:POPTR_0001s18090.1" /db_xref="TAIR:AT1G52330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GX09" /translation="MVFSKLEQPPPPEEPSSPCHYFTALPSQPPDQNYLVLPYYRPTL RWCGCRILCTASLVLLATSVYIFWPSDPEVKIVRMHVDRMQLHTIPIIALDISLLVTL KVRNSDVYSVDFTSLDVAVGYRGKMLGHVTSEHGHVRAWGSSYVQAELELNGVEVLSD VVYMLEDLARGTVPFDTVTEVAGWLGLSLFKFPLKARVSCEIVVNRTNQTIIRQNCYP MVAASQPGATTHYHCNYREIVGQITSRACLV" CDS complement(join(17710518..17710529,17710661..17710732, 17711954..17712538)) /locus_tag="TCM_028721" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG028725t4" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein isoform 3" /protein_id="EOY26757.1" /db_xref="Phytozome:POPTR_0001s18090.1" /db_xref="TAIR:AT1G52330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GX09" /translation="MVFSKLEQPPPPEEPSSPCHYFTALPSQPPDQNYLVLPYYRPTL RWCGCRILCTASLVLLATSVYIFWPSDPEVKIVRMHVDRMQLHTIPIIALDISLLVTL KVRNSDVYSVDFTSLDVAVGYRGKMLGHVTSEHGHVRAWGSSYVQAELELNGVEVLSD VVYMLEDLARGTVPFDTVTEVAGWLGLSLFKFPLKARVSCEIVVNRTNQTIIRQNCYP MSSN" mobile_element complement(17713147..17713716) /note="source:scaffold_1_CACTA_0009 13257 13828" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17713427..17717760 /note="source:CACAO_M_E33977_F20_scaffold_4 5405 9713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17717361..17718090 /note="source:scaffold_9_CACTA_0922 1602 2140" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17718511..17723427) /note="source:CACAO_Mutator_E1410_scaffold_6 40 5060" /mobile_element_type="transposon:TIR/Mutator" gene complement(17719117..17724734) /locus_tag="TCM_028723" /note="dbxref CacaoGD:Thecc1EG028723" mRNA complement(join(17719117..17719607,17719734..17719862, 17719964..17720433,17720962..17721141,17721382..17721453, 17721533..17721604,17721679..17721951,17722932..17723018, 17723311..17723370,17724169..17724734)) /locus_tag="TCM_028723" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032598t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS complement(join(17719265..17719607,17719734..17719862, 17719964..17720433,17720962..17721141,17721382..17721453, 17721533..17721604,17721679..17721951,17722932..17723018, 17723311..17723370,17724169..17724252)) /locus_tag="TCM_028723" /note="paralog of Thecc1EG032598t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26758.1" /translation="MEGICETLELRVGDTPWWESVTQPRSELVSRSGFRGFGCLSCDA IIIIIQCRQYEDLDSLLIVLREKWAFNVAITPTLWALETLETTADEALREYFVDLDVP LSEGHEYLLIRHMEDRSDWGLGARQKMRSLKEKRASGGTKQMCTVAALIDELMDKGDD HGQGSEQPLDHGLAAPKPPTGPPQTQSGYDPLFTKKTIGPQAQISPAQPQTANEPMLT QSRIVNDEAVTTRQLRRIMRKHEKEMLELKTSIQSLSVAMQALEDRIVGRILDGLKSQ GSASQGAGLKHDDANDGQHHEPGVDIDDDVLGANGEHITHVDDVVEKAVAVDVTLQSD DAEGEHLPPTDAFVDAAARAIVLYRGSTSDAVEIQWSSPESSAVHHGAAEISDPTERA RLKMVSKYMASPFVDPLVTRRDVRDKIIEDYEAFKKEKSASILGDQGVDFFITLEDPN EELTSERIDTCLSLLRKRMTGPKSKLTPSVCYTPNFQQKMPRATMQIPDELRGYVEGE RPTYAKKWEDVDFILAPCNVSGHLVVAKINLVRWTIKVVDSARTSDAKDNGVSAGQMT PLTTMMPFICHQAGYYNNIRRKR" mobile_element 17723097..17724785 /note="source:CACAO_M_E33977_F20_scaffold_4 14946 16543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17726184..17728755 /note="source:INTACT477_F225_scaffold_9-int 165 2783" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17729392..17731028 /note="source:INTACT477_F225_scaffold_9-int 2800 4469" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17731819..17732041) /note="source:CACAO_M_E5899_F5_scaffold_2 980 1201" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17735534..17738280) /locus_tag="TCM_028725" /note="dbxref CacaoGD:Thecc1EG028725" mRNA complement(join(17735534..17735889,17736455..17736540, 17737512..17738280)) /locus_tag="TCM_028725" /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein isoform 1" /inference="alignment:exonerate- protein:2:frave:gene05943.2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18090.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028721t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s18090.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1281t3; alternateUTRof:Thecc1EG028725t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3844t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1281t10" mRNA complement(join(17735534..17735889,17736279..17736343, 17737505..17738280)) /locus_tag="TCM_028725" /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein isoform 4" /inference="alignment:exonerate- protein:2:frave:gene05943.2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18090.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028721t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s05380.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1281t11; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3844t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1281t10" mRNA complement(join(17735540..17735889,17736261..17736318, 17736455..17736540,17737512..17738044)) /locus_tag="TCM_028725" /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18090.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028721t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s18090.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3844t1" CDS complement(join(17735884..17735889,17736279..17736343, 17737505..17737937)) /locus_tag="TCM_028725" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG028721t1" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein isoform 4" /protein_id="EOY26762.1" /db_xref="Phytozome:POPTR_0003s05380.1" /db_xref="TAIR:AT1G52330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GX09" /translation="MAFLVLLAASVYIFWPSQPEVKIVRMHVKRMQMHTVPIIALDIS LLVTLKVRNSDVYSMDFTSLDMAVGYRGKMLGHVKSEHDHLRAWGSSYLQAELELNGV EVLSDVVYMLEDLARGTVPFDTITEVAGWLGLSLFKFPLKVKISCEIVVNRTNQIIIH QNCYPLK" mRNA complement(join(17736402..17736645,17737512..17738104)) /locus_tag="TCM_028725" /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein isoform 3" /inference="alignment:exonerate- protein:2:frave:gene05943.2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18090.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028721t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s18090.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08293t00001; inference alignment:Newbler:10:TSA:cgbaL_g08293t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1281t10" CDS complement(join(17736469..17736540,17737512..17737937)) /locus_tag="TCM_028725" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG028721t2" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein isoform 1" /protein_id="EOY26759.1" /db_xref="Phytozome:POPTR_0001s18090.1" /db_xref="TAIR:AT1G52330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEL9" /translation="MAFLVLLAASVYIFWPSQPEVKIVRMHVKRMQMHTVPIIALDIS LLVTLKVRNSDVYSMDFTSLDMAVGYRGKMLGHVKSEHDHLRAWGSSYLQAELELNGV EVLSDVVYMLEDLARGTVPFDTITEVAGWLGLSLFKFPLKFAIEHPHFNTQTSAQRNT MKWKH" CDS complement(join(17736469..17736540,17737512..17737937)) /locus_tag="TCM_028725" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG028721t2" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein isoform 1" /protein_id="EOY26760.1" /db_xref="Phytozome:POPTR_0001s18090.1" /db_xref="TAIR:AT1G52330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEL9" /translation="MAFLVLLAASVYIFWPSQPEVKIVRMHVKRMQMHTVPIIALDIS LLVTLKVRNSDVYSMDFTSLDMAVGYRGKMLGHVKSEHDHLRAWGSSYLQAELELNGV EVLSDVVYMLEDLARGTVPFDTITEVAGWLGLSLFKFPLKFAIEHPHFNTQTSAQRNT MKWKH" CDS complement(join(17736595..17736645,17737512..17737937)) /locus_tag="TCM_028725" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG028721t2" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycofamily protein isoform 3" /protein_id="EOY26761.1" /db_xref="Phytozome:POPTR_0001s18090.1" /db_xref="TAIR:AT1G52330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GEL9" /translation="MAFLVLLAASVYIFWPSQPEVKIVRMHVKRMQMHTVPIIALDIS LLVTLKVRNSDVYSMDFTSLDMAVGYRGKMLGHVKSEHDHLRAWGSSYLQAELELNGV EVLSDVVYMLEDLARGTVPFDTITEVAGWLGLSLFKFPLKMFYADCFGLLMMLSTF" gene complement(17738774..17744176) /locus_tag="TCM_028726" /note="dbxref CacaoGD:Thecc1EG028726" mRNA complement(join(17738774..17739238,17739346..17739534, 17739695..17739756,17740109..17742906,17743440..17744176)) /locus_tag="TCM_028726" /product="Cc-nbs-lrr resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s15070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027016t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s03970.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3846t2; alternateUTRof:Thecc1EG028726t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3846t1" mRNA complement(join(17738774..17739238,17739346..17739407, 17739535..17739597,17739695..17739756,17740109..17742906, 17743440..17744176)) /locus_tag="TCM_028726" /product="Cc-nbs-lrr resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s15070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027016t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s03970.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3846t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3846t1" mRNA complement(join(17738940..17739238,17739346..17739597, 17739695..17739756,17740109..17742906,17743440..17743882)) /locus_tag="TCM_028726" /product="Cc-nbs-lrr resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s15070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027016t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s03970.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1334t2; alternateUTRof:Thecc1EG028726t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3846t1" mRNA complement(join(17739380..17739407,17739535..17739617, 17739695..17739756,17740109..17742906,17743440..17743882)) /locus_tag="TCM_028726" /product="Cc-nbs-lrr resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s15070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027016t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s03970.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1334t1; alternateUTRof:Thecc1EG028726t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3846t1" CDS complement(join(17739708..17739756,17740109..17742906, 17743440..17743607)) /locus_tag="TCM_028726" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG027016t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative isoform 1" /protein_id="EOY26763.1" /db_xref="Phytozome:POPTR_0018s03970.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA21" /translation="MAKSIVCAVLEKLGSLISEEIKQNVGLALGLEEGIQKMTSNFED IKSVLQDAETKQVKDANVRHWLKKLKDVAYDVDDVLDEWNTAKLKSQIEKQVKDVDNA PLLKKIRNSISSFTSQSTIFYNIAWKIRDLNERLDCIATDKDRYNFGLETAVEEPKRQ ITASFLDEEEVYGRSQETTILVNMLVGEKSNGGESSLHVISIVGMGGIGKTTLAQLVY NHNEVECHFDKRIWICVSDPFDEIRIAKEILEAFKGETPNMVGKDNILRQIRSYVLEK KILLVLDDVWIEDATKWEQLKNSLKYCSLGSRILITTRKNKVAIIMGTTTENLYPLHT LSQEECWSLLSHRAFYGRTREECENLEDISKKIAVKCQGLPLAAKILGGLLRFKRSRE QWQSVLDCEMLNLEEAERDLFPPLFLSYYELPMALKQCISYCAVFPKGKILNKDELIK LWMAQGYLKGAQCKEMETVGEEYFDELMMRSFLQDFKRVVELDSGIMECKMHAIVHDF VQLLTKTECLILVNDDFEELRVDAFCEDARHVTLIRKEAIPTDPNINHFKKLRSLFID SSNHDTSSLSTSLPKLFDQLDCLRTLNLSNSMFGNSIKELPDQIGKLVHLRYLDLKHN RKLKKLPESVCELCNLQTLNLTWCKSLKELPCGIGKLINLRHLENEKTDLSLMAMPKG IGRLTCLQTLRVFVAMDGGINGKASTLGDLRNLMHLQGHLKISGLGDVWDVTEAKRAE LQNKKGLRGLILDFTNSKGLMSKRLPRRDDELLLEALQPPLSLEKLEIWGYSSTTSFP NWMMGLTKLRHVSLGFCCHLNFLPPLGKLPSLESLYIGEMRRVEKVGVEFLGVGEGTL ALSPSSESSSSSIIAFPSLKHLEFRNMEEWDCWISFTSTGADHICIMPRLCSLTIDSC PKLRALPWYILQNTSLEQLDISQSPFLSERCRKETGEDWLHISHIPSIIIDGLCMQVN CSSFEEFGVLQLQPLHSSLLSSNDFLKVFEQN" CDS complement(join(17739708..17739756,17740109..17742906, 17743440..17743607)) /locus_tag="TCM_028726" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG027016t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative isoform 1" /protein_id="EOY26764.1" /db_xref="Phytozome:POPTR_0018s03970.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA21" /translation="MAKSIVCAVLEKLGSLISEEIKQNVGLALGLEEGIQKMTSNFED IKSVLQDAETKQVKDANVRHWLKKLKDVAYDVDDVLDEWNTAKLKSQIEKQVKDVDNA PLLKKIRNSISSFTSQSTIFYNIAWKIRDLNERLDCIATDKDRYNFGLETAVEEPKRQ ITASFLDEEEVYGRSQETTILVNMLVGEKSNGGESSLHVISIVGMGGIGKTTLAQLVY NHNEVECHFDKRIWICVSDPFDEIRIAKEILEAFKGETPNMVGKDNILRQIRSYVLEK KILLVLDDVWIEDATKWEQLKNSLKYCSLGSRILITTRKNKVAIIMGTTTENLYPLHT LSQEECWSLLSHRAFYGRTREECENLEDISKKIAVKCQGLPLAAKILGGLLRFKRSRE QWQSVLDCEMLNLEEAERDLFPPLFLSYYELPMALKQCISYCAVFPKGKILNKDELIK LWMAQGYLKGAQCKEMETVGEEYFDELMMRSFLQDFKRVVELDSGIMECKMHAIVHDF VQLLTKTECLILVNDDFEELRVDAFCEDARHVTLIRKEAIPTDPNINHFKKLRSLFID SSNHDTSSLSTSLPKLFDQLDCLRTLNLSNSMFGNSIKELPDQIGKLVHLRYLDLKHN RKLKKLPESVCELCNLQTLNLTWCKSLKELPCGIGKLINLRHLENEKTDLSLMAMPKG IGRLTCLQTLRVFVAMDGGINGKASTLGDLRNLMHLQGHLKISGLGDVWDVTEAKRAE LQNKKGLRGLILDFTNSKGLMSKRLPRRDDELLLEALQPPLSLEKLEIWGYSSTTSFP NWMMGLTKLRHVSLGFCCHLNFLPPLGKLPSLESLYIGEMRRVEKVGVEFLGVGEGTL ALSPSSESSSSSIIAFPSLKHLEFRNMEEWDCWISFTSTGADHICIMPRLCSLTIDSC PKLRALPWYILQNTSLEQLDISQSPFLSERCRKETGEDWLHISHIPSIIIDGLCMQVN CSSFEEFGVLQLQPLHSSLLSSNDFLKVFEQN" CDS complement(join(17739708..17739756,17740109..17742906, 17743440..17743607)) /locus_tag="TCM_028726" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG027016t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative isoform 1" /protein_id="EOY26765.1" /db_xref="Phytozome:POPTR_0018s03970.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA21" /translation="MAKSIVCAVLEKLGSLISEEIKQNVGLALGLEEGIQKMTSNFED IKSVLQDAETKQVKDANVRHWLKKLKDVAYDVDDVLDEWNTAKLKSQIEKQVKDVDNA PLLKKIRNSISSFTSQSTIFYNIAWKIRDLNERLDCIATDKDRYNFGLETAVEEPKRQ ITASFLDEEEVYGRSQETTILVNMLVGEKSNGGESSLHVISIVGMGGIGKTTLAQLVY NHNEVECHFDKRIWICVSDPFDEIRIAKEILEAFKGETPNMVGKDNILRQIRSYVLEK KILLVLDDVWIEDATKWEQLKNSLKYCSLGSRILITTRKNKVAIIMGTTTENLYPLHT LSQEECWSLLSHRAFYGRTREECENLEDISKKIAVKCQGLPLAAKILGGLLRFKRSRE QWQSVLDCEMLNLEEAERDLFPPLFLSYYELPMALKQCISYCAVFPKGKILNKDELIK LWMAQGYLKGAQCKEMETVGEEYFDELMMRSFLQDFKRVVELDSGIMECKMHAIVHDF VQLLTKTECLILVNDDFEELRVDAFCEDARHVTLIRKEAIPTDPNINHFKKLRSLFID SSNHDTSSLSTSLPKLFDQLDCLRTLNLSNSMFGNSIKELPDQIGKLVHLRYLDLKHN RKLKKLPESVCELCNLQTLNLTWCKSLKELPCGIGKLINLRHLENEKTDLSLMAMPKG IGRLTCLQTLRVFVAMDGGINGKASTLGDLRNLMHLQGHLKISGLGDVWDVTEAKRAE LQNKKGLRGLILDFTNSKGLMSKRLPRRDDELLLEALQPPLSLEKLEIWGYSSTTSFP NWMMGLTKLRHVSLGFCCHLNFLPPLGKLPSLESLYIGEMRRVEKVGVEFLGVGEGTL ALSPSSESSSSSIIAFPSLKHLEFRNMEEWDCWISFTSTGADHICIMPRLCSLTIDSC PKLRALPWYILQNTSLEQLDISQSPFLSERCRKETGEDWLHISHIPSIIIDGLCMQVN CSSFEEFGVLQLQPLHSSLLSSNDFLKVFEQN" CDS complement(join(17739708..17739756,17740109..17742906, 17743440..17743607)) /locus_tag="TCM_028726" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG027016t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative isoform 1" /protein_id="EOY26766.1" /db_xref="Phytozome:POPTR_0018s03970.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA21" /translation="MAKSIVCAVLEKLGSLISEEIKQNVGLALGLEEGIQKMTSNFED IKSVLQDAETKQVKDANVRHWLKKLKDVAYDVDDVLDEWNTAKLKSQIEKQVKDVDNA PLLKKIRNSISSFTSQSTIFYNIAWKIRDLNERLDCIATDKDRYNFGLETAVEEPKRQ ITASFLDEEEVYGRSQETTILVNMLVGEKSNGGESSLHVISIVGMGGIGKTTLAQLVY NHNEVECHFDKRIWICVSDPFDEIRIAKEILEAFKGETPNMVGKDNILRQIRSYVLEK KILLVLDDVWIEDATKWEQLKNSLKYCSLGSRILITTRKNKVAIIMGTTTENLYPLHT LSQEECWSLLSHRAFYGRTREECENLEDISKKIAVKCQGLPLAAKILGGLLRFKRSRE QWQSVLDCEMLNLEEAERDLFPPLFLSYYELPMALKQCISYCAVFPKGKILNKDELIK LWMAQGYLKGAQCKEMETVGEEYFDELMMRSFLQDFKRVVELDSGIMECKMHAIVHDF VQLLTKTECLILVNDDFEELRVDAFCEDARHVTLIRKEAIPTDPNINHFKKLRSLFID SSNHDTSSLSTSLPKLFDQLDCLRTLNLSNSMFGNSIKELPDQIGKLVHLRYLDLKHN RKLKKLPESVCELCNLQTLNLTWCKSLKELPCGIGKLINLRHLENEKTDLSLMAMPKG IGRLTCLQTLRVFVAMDGGINGKASTLGDLRNLMHLQGHLKISGLGDVWDVTEAKRAE LQNKKGLRGLILDFTNSKGLMSKRLPRRDDELLLEALQPPLSLEKLEIWGYSSTTSFP NWMMGLTKLRHVSLGFCCHLNFLPPLGKLPSLESLYIGEMRRVEKVGVEFLGVGEGTL ALSPSSESSSSSIIAFPSLKHLEFRNMEEWDCWISFTSTGADHICIMPRLCSLTIDSC PKLRALPWYILQNTSLEQLDISQSPFLSERCRKETGEDWLHISHIPSIIIDGLCMQVN CSSFEEFGVLQLQPLHSSLLSSNDFLKVFEQN" gene 17745359..17749425 /locus_tag="TCM_028727" /note="dbxref CacaoGD:Thecc1EG028727" mRNA join(17745359..17745724,17746313..17746390, 17746481..17746648,17747368..17747416,17748037..17748110, 17748452..17748545,17748869..17749059,17749352..17749425) /locus_tag="TCM_028727" /product="Ras-related small GTP-binding family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05370.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037896t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s05370.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06474t00001" CDS join(17745686..17745724,17746313..17746390, 17746481..17746648,17747368..17747416,17748037..17748110, 17748452..17748545,17748869..17748969) /locus_tag="TCM_028727" /note="paralog of Thecc1EG037896t1" /codon_start=1 /product="Ras-related small GTP-binding family protein" /protein_id="EOY26767.1" /db_xref="Phytozome:POPTR_0003s05370.1" /db_xref="TAIR:AT4G19640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q86JP3" /translation="MARPGNKIIQAKLVLLGDMGTGKTSLVLRFVKGQFFDHQEPTIG AAFFTQILSVTEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISSTDTFVRAK KWVQELQRQGNPNLVMALVANKSDLDSKREVENEDGEHFAQENGMFFIETSAKSAQNV NELFYEIAKRLARACPPKPSGINLNNERQVRRGKLFCCLG" gene complement(17749032..17756341) /locus_tag="TCM_028729" /note="dbxref CacaoGD:Thecc1EG028729" mRNA complement(join(17749032..17749060,17749353..17749595, 17749772..17751099,17751473..17751693,17753028..17753209, 17755082..17756341)) /locus_tag="TCM_028729" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05546" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037132t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s18130.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc496t1; alternateUTRof:Thecc1EG028729t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc496t6_C1" mRNA complement(join(17749036..17749060,17749353..17751099, 17751473..17751693,17753028..17753209,17755082..17756341)) /locus_tag="TCM_028729" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05546" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037132t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s18130.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc478t6; alternateUTRof:Thecc1EG028729t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc496t6_C1" mRNA complement(join(17749352..17749595,17749772..17751099, 17751473..17751693,17753028..17753209,17755082..17756341)) /locus_tag="TCM_028729" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05546" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037132t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s18130.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc496t6_C1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc496t6_C1" mRNA complement(join(17749567..17749855,17750341..17751099, 17751473..17751693,17753028..17753209,17755082..17756341)) /locus_tag="TCM_028729" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate-protein:2:frave:gene05546" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037132t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s18130.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc496t2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc496t6_C1" CDS complement(join(17749795..17749855,17750341..17751099, 17751473..17751693,17753028..17753209,17755082..17756090)) /locus_tag="TCM_028729" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG037132t1" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY26771.1" /db_xref="Phytozome:POPTR_0001s18130.1" /db_xref="TAIR:AT1G52320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B8V5" /translation="MGCSQSKIENEEAVTRCKERKQFMKEAVAARNAFAAAHSAYAMS LKNTGAALSDYAHGEVQNPNLSSHSGPSVVGPPPPQLPLVDTLLRPPPPPGNLSGDPG VPIQRSASMPIQMPLKGKQRETSTGTILEDEEEDDDVEGNDRLVKRRSGYRGSGSGGR SRREVVEEAEEVEERVTSTTVQARAMQSQPSQDSTYYYFFPTEDSVPGPSLGEVEETR VEDREVERKVFEEIPKAMEAEEKRRDEEVVVDRGQKTAMEAEKPVAAMAGVGKGTKKV GKVGVGSSGEKRLVKGSFNLLQVFAELDDHFLKASESAHEVSKMLEATRLHYHSNFAD NRGHIDHSARVMRVITWNRSFRGLKSDNVDNVKDDFDSEENETHATVLDKLLAWEKKL YDEVKAGELMKFEYQRKVATLNKLKKRGNPEALEKAKAAVSHLHTRYIVDMQSMDSTV SEINRLRDDQLYPKLVQLVDGMATMWETMKVQHDSQFRIVTVLKDLDLSQSPKETSEH HHERTIQLLAIVQDWHMQFCKLVDHQKGYIIALNNWLRLNLVPIESSLKEKVSSPPRV ETPPILGLLTAWQNQLEKLPDEIARSAINNFAHVLDTIMQHQLDEMKLKEKCEESEKE LQRKERQFKDWYHKYMQRRTPEELDPERTEANPNNEAVTERQVMVEAVKKRWEEEKEA YQRLCIQVREKSMVSLKTRLPELFNAMTGIAKACSKLYGELRYCVSEPFLPQLWPHLA SLL" CDS complement(join(17750301..17751099,17751473..17751693, 17753028..17753209,17755082..17756090)) /locus_tag="TCM_028729" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037132t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY26768.1" /db_xref="Phytozome:POPTR_0001s18130.1" /db_xref="TAIR:AT1G52320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B8V5" /translation="MGCSQSKIENEEAVTRCKERKQFMKEAVAARNAFAAAHSAYAMS LKNTGAALSDYAHGEVQNPNLSSHSGPSVVGPPPPQLPLVDTLLRPPPPPGNLSGDPG VPIQRSASMPIQMPLKGKQRETSTGTILEDEEEDDDVEGNDRLVKRRSGYRGSGSGGR SRREVVEEAEEVEERVTSTTVQARAMQSQPSQDSTYYYFFPTEDSVPGPSLGEVEETR VEDREVERKVFEEIPKAMEAEEKRRDEEVVVDRGQKTAMEAEKPVAAMAGVGKGTKKV GKVGVGSSGEKRLVKGSFNLLQVFAELDDHFLKASESAHEVSKMLEATRLHYHSNFAD NRGHIDHSARVMRVITWNRSFRGLKSDNVDNVKDDFDSEENETHATVLDKLLAWEKKL YDEVKAGELMKFEYQRKVATLNKLKKRGNPEALEKAKAAVSHLHTRYIVDMQSMDSTV SEINRLRDDQLYPKLVQLVDGMATMWETMKVQHDSQFRIVTVLKDLDLSQSPKETSEH HHERTIQLLAIVQDWHMQFCKLVDHQKGYIIALNNWLRLNLVPIESSLKEKVSSPPRV ETPPILGLLTAWQNQLEKLPDEIARSAINNFAHVLDTIMQHQLDEMKLKEKCEESEKE LQRKERQFKDWYHKYMQRRTPEELDPERTEANPNNEAVTERQVMVEAVKKRWEEEKEA YQRLCIQVREKSMVSLKTRLPELFNAMTGIAKACSKLYGELRSISHSKNPSYSP" CDS complement(join(17750301..17751099,17751473..17751693, 17753028..17753209,17755082..17756090)) /locus_tag="TCM_028729" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037132t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY26769.1" /db_xref="Phytozome:POPTR_0001s18130.1" /db_xref="TAIR:AT1G52320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B8V5" /translation="MGCSQSKIENEEAVTRCKERKQFMKEAVAARNAFAAAHSAYAMS LKNTGAALSDYAHGEVQNPNLSSHSGPSVVGPPPPQLPLVDTLLRPPPPPGNLSGDPG VPIQRSASMPIQMPLKGKQRETSTGTILEDEEEDDDVEGNDRLVKRRSGYRGSGSGGR SRREVVEEAEEVEERVTSTTVQARAMQSQPSQDSTYYYFFPTEDSVPGPSLGEVEETR VEDREVERKVFEEIPKAMEAEEKRRDEEVVVDRGQKTAMEAEKPVAAMAGVGKGTKKV GKVGVGSSGEKRLVKGSFNLLQVFAELDDHFLKASESAHEVSKMLEATRLHYHSNFAD NRGHIDHSARVMRVITWNRSFRGLKSDNVDNVKDDFDSEENETHATVLDKLLAWEKKL YDEVKAGELMKFEYQRKVATLNKLKKRGNPEALEKAKAAVSHLHTRYIVDMQSMDSTV SEINRLRDDQLYPKLVQLVDGMATMWETMKVQHDSQFRIVTVLKDLDLSQSPKETSEH HHERTIQLLAIVQDWHMQFCKLVDHQKGYIIALNNWLRLNLVPIESSLKEKVSSPPRV ETPPILGLLTAWQNQLEKLPDEIARSAINNFAHVLDTIMQHQLDEMKLKEKCEESEKE LQRKERQFKDWYHKYMQRRTPEELDPERTEANPNNEAVTERQVMVEAVKKRWEEEKEA YQRLCIQVREKSMVSLKTRLPELFNAMTGIAKACSKLYGELRSISHSKNPSYSP" CDS complement(join(17750301..17751099,17751473..17751693, 17753028..17753209,17755082..17756090)) /locus_tag="TCM_028729" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG037132t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY26770.1" /db_xref="Phytozome:POPTR_0001s18130.1" /db_xref="TAIR:AT1G52320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B8V5" /translation="MGCSQSKIENEEAVTRCKERKQFMKEAVAARNAFAAAHSAYAMS LKNTGAALSDYAHGEVQNPNLSSHSGPSVVGPPPPQLPLVDTLLRPPPPPGNLSGDPG VPIQRSASMPIQMPLKGKQRETSTGTILEDEEEDDDVEGNDRLVKRRSGYRGSGSGGR SRREVVEEAEEVEERVTSTTVQARAMQSQPSQDSTYYYFFPTEDSVPGPSLGEVEETR VEDREVERKVFEEIPKAMEAEEKRRDEEVVVDRGQKTAMEAEKPVAAMAGVGKGTKKV GKVGVGSSGEKRLVKGSFNLLQVFAELDDHFLKASESAHEVSKMLEATRLHYHSNFAD NRGHIDHSARVMRVITWNRSFRGLKSDNVDNVKDDFDSEENETHATVLDKLLAWEKKL YDEVKAGELMKFEYQRKVATLNKLKKRGNPEALEKAKAAVSHLHTRYIVDMQSMDSTV SEINRLRDDQLYPKLVQLVDGMATMWETMKVQHDSQFRIVTVLKDLDLSQSPKETSEH HHERTIQLLAIVQDWHMQFCKLVDHQKGYIIALNNWLRLNLVPIESSLKEKVSSPPRV ETPPILGLLTAWQNQLEKLPDEIARSAINNFAHVLDTIMQHQLDEMKLKEKCEESEKE LQRKERQFKDWYHKYMQRRTPEELDPERTEANPNNEAVTERQVMVEAVKKRWEEEKEA YQRLCIQVREKSMVSLKTRLPELFNAMTGIAKACSKLYGELRSISHSKNPSYSP" gene complement(17757885..17761604) /locus_tag="TCM_028730" /note="dbxref CacaoGD:Thecc1EG028730" mRNA complement(join(17757885..17758231,17758518..17758594, 17758805..17758952,17759046..17759151,17759689..17759827, 17759967..17760117,17760219..17760269,17760817..17760919, 17761027..17761100,17761190..17761509,17761578..17761604)) /locus_tag="TCM_028730" /product="Methyltransferase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400010037" /inference="similar to AA sequence:Phytozome:GSVIVT01017098001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc330t5" CDS complement(join(17758807..17758952,17759046..17759151, 17759689..17759827,17759967..17760117,17760219..17760269, 17760817..17760919,17761027..17761100,17761190..17761433)) /locus_tag="TCM_028730" /codon_start=1 /product="Methyltransferase family protein, putative" /protein_id="EOY26772.1" /db_xref="Phytozome:GSVIVT01017098001" /db_xref="TAIR:AT1G79915.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HQD3" /translation="MKGGDSKKDKEEQQQVMSEVHLGCPPGISGPHISRFIISLPAGI PEVESSRFHELFKEEEACTDQDISFDEDGDLVLPRRRRNSRRCFTMKIQHNITSSIPS VGLQVWRAELVLSDFVLHKMCTTTDFDGIVSLELGAGTGLAGMLLAHAAKTVFLTDHG DKILENCVKNVQLNSGVFNCQAAVHVRELDWVQPWPPKVGLDLVSQERYSWSLSELEE VQKASLLVAADVIYSDDLTDALFGILEGLMSQGSEKVLYLALEKRYNFSLEDLDVVAN GYSHFRSYLREDDECEGLEHRSLPCFMGRRINVAEIPQYVGEYDRGKDAELWQIRYNK GQL" gene complement(17761843..17766324) /locus_tag="TCM_028731" /note="dbxref CacaoGD:Thecc1EG028731" mRNA complement(join(17761843..17763135,17763450..17763590, 17763691..17763835,17764089..17764192,17765463..17765595, 17765722..17766324)) /locus_tag="TCM_028731" /product="Regulator of Vps4 activity in the MVB pathway protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05340.1" /inference="similar to AA sequence:Phytozome:POPTR_0109s00230.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1587t3" CDS complement(join(17762164..17763135,17763450..17763590, 17763691..17763835,17764089..17764192,17765463..17765595, 17765722..17765762)) /locus_tag="TCM_028731" /codon_start=1 /product="Regulator of Vps4 activity in the MVB pathway protein, putative" /protein_id="EOY26773.1" /db_xref="Phytozome:POPTR_0109s00230.1" /db_xref="TAIR:AT1G79910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RQQ1" /translation="MFDLLMKPKFYAKCKSDIRMIKMRLETIQKKRNTVEKYLKNDIA ELLRSGLDYNAYGRAEGLLIEQNRTACYNLIEQFSECISKHVSVMQKSSECPEECKEA IPSLIYAAARFADLPELRDLRTMFTERYGNSLESFLNQEFVWKLKAEPPTKEMKLQLM HDVAQEFSIEWDSKALEQKLFKPPPPQQNEAWHKSLDDADDDGHKLYRSKNDTFQKSN NHDDENGLGNMLENTRPKRKETDLTSHGRKDDTDDKYKLHSSSEDELSDKVFPNTSST SVESVSEDNIENRKPFYYRFMPPPYVRPSLGKEKSSTEEPTTPSDNTDNEKNRKWDDS VGESKPKPRSVRRRPLKTPPGREVLSSDENDGAAKNFSSSAVNREEARKGLASIQMEE SDERDNEEKMMDGLLMHYSTKKSPYESASKWKANLRLAPGRQTAEDSSKGSRFRSTKS DPNSPPGRAATFPKEATSPTETTGRHARASSLQPDMFAGHVHPKLPEYDDLAARLAAL RGG" gene complement(17768999..17770844) /locus_tag="TCM_028732" /note="dbxref CacaoGD:Thecc1EG028732" mRNA complement(join(17768999..17769993,17770089..17770291, 17770379..17770844)) /locus_tag="TCM_028732" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene30877.2" /inference="similar to AA sequence:frave:gene30877" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00628t00002" CDS complement(join(17769993,17770089..17770291, 17770379..17770381)) /locus_tag="TCM_028732" /note="dbxref frave:gene30877" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26774.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GFP1" /translation="MSLMPLMVRPLARLLTALVAHPAASVTTLLYYSDLLPRNLDLER LVRRDLLDRENYLFHFLINLLRCF" gene complement(17772800..17778104) /locus_tag="TCM_028733" /note="dbxref CacaoGD:Thecc1EG028733" mRNA complement(join(17772800..17773096,17773690..17774060, 17774202..17774352,17774436..17774673,17774782..17774992, 17775059..17775267,17775396..17775500,17776107..17777557, 17777837..17778104)) /locus_tag="TCM_028733" /product="Serine/threonine-protein kinase PBS1, putative" /inference="alignment:exonerate- protein:2:ricco:30146.m003609" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037893t1" /inference="similar to AA sequence:ricco:30146.m003609" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1374t1" CDS complement(join(17773752..17774060,17774202..17774352, 17774436..17774673,17774782..17774992,17775059..17775267, 17775396..17775500,17776107..17777253)) /locus_tag="TCM_028733" /note="dbxref ricco:30146.m003609; paralog of Thecc1EG037893t1" /codon_start=1 /product="Serine/threonine-protein kinase PBS1, putative" /protein_id="EOY26775.1" /db_xref="TAIR:AT3G16030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RQP5" /translation="MASRAKNLVLFSLSCFLPWLCTTTYSQTATIGQGQQLKHYQQLV SNSGMFKLGFKSVHHNNSYLGIWYYGDDDNLLWVANRDTPISGTSGILEIDDHGNLII VNEPADPFVLYSVEEPSNTNATLEDSGNFVLHELSSDGSIKQVLWQSFDHPTDTLLPG MKLGINSKTGLNWSLTSWRSDMSPASGSFTLGLDPRDTSQLVIWWRGETYWKSGSFLQ GSSLVALVNGSYNFGFISNENETYFNYTVKKAVTIFPRLKLNPEGELVSSRADSVALE VSCTKNLSVGCLKQNIPACRSLGNKVFQHHTGFMSNTGFKFSQSDNLSRIDCQAECLH DCSCVAYASKNDDGTGCEIWSTGISFTESITRDDRSDVRRDIFILEPRENKWWIWLII VLGGLMVVPPLCSICYVIWKWSKRRGDGKMNQRMLLNEIGGGAMPSTSNENGLSRKKD GHDNQLDVFSFESIAASTNYFSVGNKLGEGGFGPVYKGKLLDGREIAVKRLSSHSGQG LLEFKNEAILIAKLQHTNLVRLLGFCIQGEEKILIYEYMPNKSLDFFIFDSDRKYRLN WKKRFNIIEGITQGLLYLHKYSRLKVIHRDLKAGNILLDDEMNPKISDFGMARIFGLN ESEANTKRVVGTYGYMSPEYAFRGIVSIKTDVFSFGVLLLEIVSGKKNNCCYHSDRPL NLIGYAWQLWNEGRGLVLIDPILDESCNRNEALRCIHVGLLCVQDRAIDRPTMPDVVS MLSNETVQLPAPKQPAFFIYAAEEEPDIADVKSNKCSINYVSVSVMEAR" mobile_element 17779080..17781907 /note="source:CACAO_M_S_E84438_F15_scaffold_6 1 2828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17782344..17782781 /note="source:INTACT201_F33_scaffold_5-int 10961 11395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17783283..17783810 /note="source:INTACT201_F33_scaffold_5-int 11895 12422" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17784059..17784607 /note="source:INTACT201_F33_scaffold_5-int 2400 2947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17784831..17786072 /note="source:CACAO_M_E13363_F273_scaffold_3 1 1140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17786039..17786237) /note="source:CACAO_M_E1841_F5_scaffold_1 16466 16663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17787737..17790023) /note="source:CACAO_M_S_E122136_F76_scaffold_10 12329 14596" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17795190..17795951) /note="source:CACAO_M_E1763_F323_scaffold_1 1 731" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17795952..17797686) /note="source:CACAO_on_E279_scaffold_9 803 2497" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(17799068..17801426) /note="source:CACAO_M_S_E38262_F319_scaffold_4 6182 8552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17802768..17803565) /note="source:CACAO_M_E12489_F323_scaffold_3 1142 1939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17803894..17804503 /note="source:CACAO_M_E1763_F323_scaffold_1 2754 3366" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17805420..17805708 /note="source:INTACT157_F155_scaffold_1-int 1 247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17805835..17808323 /note="source:INTACT61_F128_scaffold_2-int 4095 6571" /mobile_element_type="retrotransposon:LTR/Gypsy" assembly_gap 17808324..17818323 /estimated_length=10000 /gap_type="between scaffolds" gene 17819178..17820535 /locus_tag="TCM_028735" /note="dbxref CacaoGD:Thecc1EG028735" mRNA join(17819178..17819417,17819558..17819613, 17820087..17820128,17820240..17820535) /locus_tag="TCM_028735" /product="F9L1.21 protein" /inference="similar to AA sequence:TAIR:AT1G15270.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16013t1" CDS join(17819402..17819417,17819558..17819613, 17820087..17820128,17820240..17820320) /locus_tag="TCM_028735" /codon_start=1 /product="F9L1.21 protein" /protein_id="EOY26776.1" /db_xref="TAIR:AT1G15270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2D964" /translation="MSSKQGGKLKPLKQPKSDKKEYDEHDMANIQKKKEEEKALKELR AKAQQKGSFGGSGLKKSGKK" gene complement(17821284..17824007) /locus_tag="TCM_028736" /note="dbxref CacaoGD:Thecc1EG028736" mRNA complement(join(17821284..17821737,17822270..17822378, 17822470..17822492,17823621..17824007)) /locus_tag="TCM_028736" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s05810.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15959t2" CDS complement(join(17821549..17821737,17822270..17822378, 17822470..17822492,17823621..17823914)) /locus_tag="TCM_028736" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26777.1" /translation="MALLTTATLTKLPLILSSSFPSSNSSTSTSTSTSSSCIKFQHQT HNFRSLYLGPSPAFRRNPITIIPRTSYNVGKRHVVCMAPEEEKMTRRSPLDFPITPNL KFNRASSLSLSHLGLLYGVELVVESWQILKINEHIAYTVKEWERPKPGRRPDIFPQFS PMKTPLPIPMPADPPEEEEEEEEKKEEEEEDPEKVEEPENPEKQ" gene 17826885..17829809 /locus_tag="TCM_028737" /note="dbxref CacaoGD:Thecc1EG028737" mRNA join(17826885..17827174,17827333..17827742, 17829073..17829809) /locus_tag="TCM_028737" /product="Mitochondrial substrate carrier family protein" /inference="alignment:exonerate-protein:2:frave:gene20469" /inference="similar to AA sequence:ricco:30146.m003605" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc603t9" CDS join(17827509..17827742,17829073..17829786) /locus_tag="TCM_028737" /note="dbxref ricco:30146.m003605" /codon_start=1 /product="Mitochondrial substrate carrier family protein" /protein_id="EOY26778.1" /db_xref="TAIR:AT1G79900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CA93" /translation="MDFWPEFLASSWGREFVAGGFGGMAGIISGYPLDTLRIRQQSSN SGSALSILRRVVATEGPGALYRGMGAPLASVTFQNAMVFQIYAILSRAFDSSVSSTDP PAYKGVALAGVGTGALQSIMLSPVELVKIRLQLQNTSYPTLQLPRALTGPVTVAKSIL KTEGLRGLYCGFTITALRDAPAHGFYFWTYEYMREQLHPGCRKSGQESLRTMLIAGGL AGVASWICCYPLDVVKTRLQAQSPSSPQKYNGIIDCLQKSVKQEGFGVLWRGLGTAVA RAFVVNGAIFSAYEITLRCLFNNGNIQTENTIENNLDNT" gene complement(17829935..17833197) /locus_tag="TCM_028738" /note="dbxref CacaoGD:Thecc1EG028738" mRNA complement(join(17829935..17830768,17830852..17830920, 17832070..17833197)) /locus_tag="TCM_028738" /product="Pyridoxine biosynthesis 1.2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021693t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s18240.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc503t1" CDS complement(join(17830663..17830768,17830852..17830920, 17832070..17832965)) /locus_tag="TCM_028738" /note="paralog of Thecc1EG021693t1" /codon_start=1 /product="Pyridoxine biosynthesis 1.2" /protein_id="EOY26779.1" /db_xref="Phytozome:POPTR_0001s18240.1" /db_xref="TAIR:AT3G16050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L940" /translation="MAEDGAVTLYNNTAITDAKKNSFSIKVGMAQMLRGGAILQVSTL SQAKIAEEAGACCLVLTEPNCQGISRMPDPSLIKQIKRTVSVPVMARSRIGHFVEAQI LERVGVDYIDESEVLAIADEDNFINKHNFICPFVCGCKNLGEALRRVREGAAMIRTQG DLLGTGNIAETVKNVRSVMGEIRVLNNMDEDEVFAFSKKIAAPYDLVAQTKQMGRLPV VHFAAGGILTPADAALMMQLGCDGVFVGSEVFDNCSDPYKRVRGIVEAVRHYNDPHVL VENSCGLEEEMAGLNVTEERMEQIHKTIPSFLVPLTNVYVDGQWQSIVELQRKISSHR CRALLKRQDQAPSCSLWATMHG" gene 17836968..17837664 /locus_tag="TCM_028739" /note="dbxref CacaoGD:Thecc1EG028739" mRNA join(17836968..17837105,17837259..17837664) /locus_tag="TCM_028739" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage" CDS join(17837065..17837105,17837259..17837484) /locus_tag="TCM_028739" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26780.1" /translation="MTTCTTPSSSLMLADSKHVVVAAVAAEAAEGKEGVVEGATAIAT ALPNPKKGKAALPLNRTEIDRTETPLKPFETDFRHHAVRSVRIA" gene 17839149..17845390 /locus_tag="TCM_028740" /note="dbxref CacaoGD:Thecc1EG028740" mRNA join(17839149..17839648,17840243..17840473, 17840921..17841115,17841358..17841459,17841900..17841977, 17842089..17842170,17842547..17842706,17842788..17843090, 17843615..17843833,17843959..17844316,17844403..17844468, 17844695..17845390) /locus_tag="TCM_028740" /product="ATP binding microtubule motor family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30146.m003602" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037890t1" /inference="similar to AA sequence:ricco:30146.m003602" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3894t4" mRNA join(17839199..17839648,17840243..17840473, 17840921..17841115,17841358..17841459,17841900..17841977, 17842089..17842170,17842547..17842706,17842788..17843090, 17843615..17843833,17843959..17844338,17844654..17845034) /locus_tag="TCM_028740" /product="ATP binding microtubule motor family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30146.m003602" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037890t1" /inference="similar to AA sequence:ricco:30146.m003602" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc109t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3894t4; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc93t3_C1" CDS join(17839478..17839648,17840243..17840473, 17840921..17841115,17841358..17841459,17841900..17841977, 17842089..17842170,17842547..17842706,17842788..17843090, 17843615..17843833,17843959..17844316,17844403..17844468, 17844695..17844874) /locus_tag="TCM_028740" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30146.m003602; paralog of Thecc1EG037890t1" /codon_start=1 /product="ATP binding microtubule motor family protein isoform 1" /protein_id="EOY26781.1" /db_xref="TAIR:AT3G16060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GX18" /translation="MNGMGRQGQRSGSTGVQVHHQRQYSDNFLETTSNGRWLQSAGLQ HLHSSNNSIPPLQDYAFYGGGVGGGGGQGSRMYRNVQRGFNTGNDFFTEPTTPPVSSR PSSQRKNGGDSPSEFSPGLLDLHSFDTELLPEMPVPNLYDGPSLYNPVRGRSFDDSEP YISDNKQASRARGVPENSLLKSFASDKEKANSVAKIKVVVRKRPLNKKELAKNEEDII ETLSNSLVVHETKLKVDLTEYMEKHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRT KATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRNQGFQLFVSFFEIYGGKLFD LLSDRKKLCMREDGKQQVCIVGLQEYRVSDVETIKELIEKGNATRSTGTTGANEESSR SHAILQLAIKRSVDGNESKPPRVVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKS LLALKECIRALDNDQGHIPFRGSKLTEVLRDSFMGNSRTVMISCISPSSGSCEHTLNT LRYADRVKSLSKGGNPKKDVLSSTLNLKESTALPLSSVLPTASTFEDDINDTWPDQNE RDDFDASEDSYEPEKAMWKKNVKPDQYSFSTLEDKLWKPNGQTKWKEPLRTDFKHSKS DDDLNALLQEEEDLVNAHRKQVEETMNIVKEEMNLLVEADKPGNQLDDYISRLNAILS QKAAGIMQLQTRLAHFQKRLKEHNVLVSSSGY" CDS join(17839478..17839648,17840243..17840473, 17840921..17841115,17841358..17841459,17841900..17841977, 17842089..17842170,17842547..17842706,17842788..17843090, 17843615..17843833,17843959..17844338,17844654..17844673) /locus_tag="TCM_028740" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30146.m003602; paralog of Thecc1EG037890t1" /codon_start=1 /product="ATP binding microtubule motor family protein isoform 2" /protein_id="EOY26782.1" /db_xref="TAIR:AT3G16060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GX18" /translation="MNGMGRQGQRSGSTGVQVHHQRQYSDNFLETTSNGRWLQSAGLQ HLHSSNNSIPPLQDYAFYGGGVGGGGGQGSRMYRNVQRGFNTGNDFFTEPTTPPVSSR PSSQRKNGGDSPSEFSPGLLDLHSFDTELLPEMPVPNLYDGPSLYNPVRGRSFDDSEP YISDNKQASRARGVPENSLLKSFASDKEKANSVAKIKVVVRKRPLNKKELAKNEEDII ETLSNSLVVHETKLKVDLTEYMEKHEFVFDAVLNEEVSNDEVYRETVEPIVPIIFQRT KATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRNQGFQLFVSFFEIYGGKLFD LLSDRKKLCMREDGKQQVCIVGLQEYRVSDVETIKELIEKGNATRSTGTTGANEESSR SHAILQLAIKRSVDGNESKPPRVVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKS LLALKECIRALDNDQGHIPFRGSKLTEVLRDSFMGNSRTVMISCISPSSGSCEHTLNT LRYADRVKSLSKGGNPKKDVLSSTLNLKESTALPLSSVLPTASTFEDDINDTWPDQNE RDDFDASEDSYEPEKAMWKKNVKPDQYSFSTLEDKLWKPNGQTKWKEPLRTDFKHSKS DDDLNALLQVILQDNDYLLKFY" gene 17845152..17848170 /locus_tag="TCM_028741" /note="dbxref CacaoGD:Thecc1EG028741" mRNA join(17845152..17845922,17846375..17846563, 17846639..17846804,17847374..17848170) /locus_tag="TCM_028741" /product="Peroxidase superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30146.m003601" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032808t1" /inference="similar to AA sequence:ricco:30146.m003601" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09900t00001" CDS join(17845560..17845922,17846375..17846563, 17846639..17846804,17847374..17847918) /locus_tag="TCM_028741" /note="dbxref ricco:30146.m003601; paralog of Thecc1EG032808t1" /codon_start=1 /product="Peroxidase superfamily protein, putative" /protein_id="EOY26783.1" /db_xref="TAIR:AT4G33870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HYE9" /translation="MPRSFSESATMRTLSFFIVLLCVWISFRMTNRSNHFSFSFSSSF SLNSKSNSFWIFQDILLDSEALEDGQAPARSLEYDFYRETCPEADKIIRAKVHQLFKI KASLAPALLRLAFHDCFIEGCDASILLDAVEGMDSEKDSPPNESLKGFDGIDIIKSDV EQVCPGVVSCADILVLAAREAVLLSGGPFYPLNTGRRDSTASFSDSATNELPSPHADL SETLASFSSRGFDERETVTLLGAHSIGVIHCKFFQNRLYNFGGTDEPDPTLDSEILEQ MRSKCPKNHSSSSPAAPPFSDGSPMKAPRSPSLYNSLSSAVPPSTSFDKLLSSSPKDQ GTVMTYGGTGADFGTVYYRSLLQGKGILYADQQLMAGEETGLWVRAYASDASLYQRDF ALAMMKLSNLHVLTAPRGQIRLNCSRVA" gene complement(17848450..17849345) /locus_tag="TCM_028742" /note="dbxref CacaoGD:Thecc1EG028742" mRNA complement(17848450..17849345) /locus_tag="TCM_028742" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05250.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s05250.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5305t1" CDS complement(17848633..17849286) /locus_tag="TCM_028742" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26784.1" /db_xref="Phytozome:POPTR_0003s05250.1" /translation="MPLMDSIQKSKNFFHKTVENLKSLFFVGYQKLSKPPLLVLDSFS CTGGSRKKHQQDQFYTDFSDDWEVCLEEAKMRKQNDAMTLKGQMMEEDAYSGSSMDFA DKNPVKNKKQNGGKEEIKKVGNSQLVKGEEQYYYKRNGGGYALAQKMKELEMMDVGDM EHVLDVEEALHYYSRLKSPVYLSIVDKFFMDMYSDFSVPQASASINRSKRRFRSIRL" gene complement(17849990..17855794) /locus_tag="TCM_028743" /note="dbxref CacaoGD:Thecc1EG028743" mRNA complement(join(17849990..17851189,17851605..17852151, 17852363..17852584,17852765..17853007,17853115..17853417, 17853716..17854069,17854405..17854493,17854573..17855208, 17855592..17855794)) /locus_tag="TCM_028743" /product="RAD3-like DNA-binding helicase protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18290.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s18290.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1080t6" mRNA complement(join(17850371..17851189,17851605..17852151, 17852363..17852584,17852765..17853007,17853115..17853417, 17853716..17854069,17854405..17854493,17854573..17855208, 17855709..17855772)) /locus_tag="TCM_028743" /product="RAD3-like DNA-binding helicase protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18290.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s18290.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1080t3; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1080t6" CDS complement(join(17850975..17851189,17851605..17852151, 17852363..17852584,17852765..17853007,17853115..17853417, 17853716..17854069,17854405..17854493,17854573..17855208, 17855709..17855721)) /locus_tag="TCM_028743" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RAD3-like DNA-binding helicase protein isoform 2" /protein_id="EOY26786.1" /db_xref="Phytozome:POPTR_0001s18290.1" /db_xref="TAIR:AT1G79890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GG23" /translation="MENGGTGKTLSIICSALQWVLDQRQKQKSEERVASDEKQENIGQ IGSDDEPDWIKNFVVNKDNQMDDKKSKKKKYGFASAKPAKRNNKDSSKDLFSCDPGEA CFNKKKECKKTVKKNDADELGGEEFLLEEYESEEEGEVGSSNSKRKASTFSVSSSSDE EGESEEEEEEVKLKVFFCSRTHSQLSQFIKELRKTVFANEMNIVSLGSRKNFCINEEV LRLGNSTRINERCLELQKSKKKEISKIKNLGAEGRIRQTKASSGCPMLRKHKLQRQFR SEISQQGALDIEDLVQLGRNIGTCPYYGSRSMITPADLVVLPYQSLLSKSSCEALGLN LKNNVVIIDEAHNLADSLISMYDAKITLPQLEKVHSHIEKYFGRFHSLLGSGNRRYIQ TLLVLTRAFLRVLVDDKDVNCLNTCPDAQTGVGEKHRFDSSMAINDFLFSLNIDNINL MKVLQYIKESNIMHKVSGYGDKMTTLQKGSAVKENGESCDDGSTLSGFRALADMLLSL TNNDGDGRIIISRKRPTCSRQGAYLKYVMLTGEKIFSEIVHEAHAVVLAGGTLQPIEE TRERLFPWLPSNQLHFFSCSHIVPPESILPLAVSCGPSGRSFDFSYNLRSSSTMIEEL GLLLCNLATVVPEGIVVFLSSFEYEGQVYDAWKTSGILERLMKKKYVFREPRKNTKVE VILKEYKEAIDNPAPRSGAILLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSDIEL LERVKHIEGLGDSSTMKSLKLLSCEEYNGGDIQAAFNILRSCTRRGKEYYENLCMKAV NQSIGRAIRHINDYAAILLVDIRYASDSSKRSFSHPSSKLPQWIKDRLVSATNNYGEV HKLLHHFFKLNKNRGCK" CDS complement(join(17850975..17851189,17851605..17852151, 17852363..17852584,17852765..17853007,17853115..17853417, 17853716..17854069,17854405..17854493,17854573..17855208, 17855592..17855721)) /locus_tag="TCM_028743" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RAD3-like DNA-binding helicase protein isoform 1" /protein_id="EOY26785.1" /db_xref="Phytozome:POPTR_0001s18290.1" /db_xref="TAIR:AT1G79890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GG23" /translation="MENGGEPKFPAFPYKPYSIQIDFMNALYHSLDTGGVSMLESPTG TGKTLSIICSALQWVLDQRQKQKSEERVASDEKQENIGQIGSDDEPDWIKNFVVNKDN QMDDKKSKKKKYGFASAKPAKRNNKDSSKDLFSCDPGEACFNKKKECKKTVKKNDADE LGGEEFLLEEYESEEEGEVGSSNSKRKASTFSVSSSSDEEGESEEEEEEVKLKVFFCS RTHSQLSQFIKELRKTVFANEMNIVSLGSRKNFCINEEVLRLGNSTRINERCLELQKS KKKEISKIKNLGAEGRIRQTKASSGCPMLRKHKLQRQFRSEISQQGALDIEDLVQLGR NIGTCPYYGSRSMITPADLVVLPYQSLLSKSSCEALGLNLKNNVVIIDEAHNLADSLI SMYDAKITLPQLEKVHSHIEKYFGRFHSLLGSGNRRYIQTLLVLTRAFLRVLVDDKDV NCLNTCPDAQTGVGEKHRFDSSMAINDFLFSLNIDNINLMKVLQYIKESNIMHKVSGY GDKMTTLQKGSAVKENGESCDDGSTLSGFRALADMLLSLTNNDGDGRIIISRKRPTCS RQGAYLKYVMLTGEKIFSEIVHEAHAVVLAGGTLQPIEETRERLFPWLPSNQLHFFSC SHIVPPESILPLAVSCGPSGRSFDFSYNLRSSSTMIEELGLLLCNLATVVPEGIVVFL SSFEYEGQVYDAWKTSGILERLMKKKYVFREPRKNTKVEVILKEYKEAIDNPAPRSGA ILLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSDIELLERVKHIEGLGDSSTMKSL KLLSCEEYNGGDIQAAFNILRSCTRRGKEYYENLCMKAVNQSIGRAIRHINDYAAILL VDIRYASDSSKRSFSHPSSKLPQWIKDRLVSATNNYGEVHKLLHHFFKLNKNRGCK" gene 17855899..17858916 /locus_tag="TCM_028744" /note="dbxref CacaoGD:Thecc1EG028744" mRNA join(17855899..17856084,17856181..17856316, 17856847..17856948,17857078..17857125,17858813..17858916) /locus_tag="TCM_028744" /product="Zinc-binding ribosomal protein family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037139t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s18370.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16093t1" CDS join(17856082..17856084,17856181..17856316, 17856847..17856948,17857078..17857124) /locus_tag="TCM_028744" /note="paralog of Thecc1EG037139t2" /codon_start=1 /product="Zinc-binding ribosomal protein family protein" /protein_id="EOY26787.1" /db_xref="Phytozome:POPTR_0001s18370.1" /db_xref="TAIR:AT3G16080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q43292" /translation="MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACGFPAARK RKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRKKVAAASA" mobile_element complement(17857899..17858829) /note="source:CACAO_M_E49279_F74_scaffold_6 1004 1935" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17858774..17867437) /locus_tag="TCM_028745" /note="dbxref CacaoGD:Thecc1EG028745" mRNA complement(join(17858774..17859438,17859755..17859837, 17859958..17860147,17860675..17860810,17860944..17861023, 17861211..17861584,17861689..17861734,17861880..17861948, 17862247..17862391,17862563..17862666,17862769..17864008, 17864087..17864226,17864363..17864540,17864628..17865021, 17866816..17867437)) /locus_tag="TCM_028745" /product="Phox-associated domain,Phox-like,Sorting nexin isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05200.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s18360.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc637t13" CDS complement(join(17859304..17859438,17859755..17859837, 17859958..17860147,17860675..17860810,17860944..17861023, 17861211..17861584,17861689..17861734,17861880..17861948, 17862247..17862391,17862563..17862666,17862769..17864008, 17864087..17864226,17864363..17864540,17864628..17865021, 17866816..17866921)) /locus_tag="TCM_028745" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Phox-associated domain,Phox-like,Sorting nexin isoform 1" /protein_id="EOY26788.1" /db_xref="Phytozome:POPTR_0001s18360.1" /db_xref="TAIR:AT1G15240.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RQN0" /translation="MNRSKQVTARDLVEEAKKRIVILAICVVGLSYLMSLTSSSVLVN LPAAAALIILLRYFSLDYEMRRKAAVYNSKPASTNALNTKQPPEYLKAVERSDWRRKV NSPVVEDAIDHFTRHLISEWVTDLWYSRLTPDREGPEELVQIMNGVLGEFSDRMRNIN LIELLTRDFINLICSHLELFRLNQAKIEKQKSGPLTIKDRDTEIRCVLAAENKLHPAL FSAEAEHKVLQHLMDGLISFTFRPEDLQCSFFRYIVRELLACAVMRPVLNLVSPRFIN ERIESAVISMTKAKGGFNAAQDASQHKPNGSSRISSDHFSKFLDPSVTGVELVQLKTD QPRAAGGTAAADNLNGTHLSKDPLLSLDTRSSRSWSSVPLNSQTGVEGGIQRHRSGGE WGAMLDLISRRKTEALAPENFENMWTKGRNYKKKEGEKRLIEQVPQHSSIRNAATMDH SKAVSKTREKYPIKHNSSESSASQSALTDQRKIEKSFPHEPKSVSYCSSVASYQEDDE HSLVDLEEVESESSDSFTSEEEETGNVTGLDSPGTKVWDGKSNRNLTVSHIHHPLENP EGHMAKKAGGRRVRYQRLTRTPSSRKRSRLTSQKLPVWQEVERTSFLSGDGQDILNSL NGHGKADDSSDDSDAEFFGRVHSGATASSSAASISISESRSLTANSLQNSLVVDSFFK LRCEVLGANIVKSGSRMFAVYSISVTDVNNNNSWSIKRRFRHFEELHQRLKQFPDYKL HLPPKHFLSTGLDVYVIRERCKWLDGYLKKLLQLPTISGSIEVWDFLSVDSQTYVFSN SFSIVETLSVDLDDNPSEKIKKASNVMGPLMGSLSSRREQLDTGSKEPALQMKLNLAT DGLRNAKDISYSPSKFPTKERGKSLEESGSDSDTRLQNNSVVRDMGKNAKGKENKRTE DTSELLLDAATYPILPTEWVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQILQL GMGDAFDDWLIEKIQLLRKGSVVASGIKRIEQILWPDGIFITKHPKRQRPPSSSRPSQ ASPRSPQSPEISSPRFSDEQQKLEAERRAKFVYELMIDNAPTAIVGLVGRKEYEQCAK DLYFFIQSSVCLKLLAYDLVELLLLSAFPEMEYVFKQLHEEKHKFGEFKAE" mRNA complement(join(<17859809..17859837,17859958..17860147, 17860675..17860810,17860944..17861023,17861211..17861584, 17861689..17861734,17861880..17861948,17862247..17862391, 17862563..17862666,17862769..17864008,17864087..17864226, 17864363..17864540,17864628..17865021,17866816..17867290)) /locus_tag="TCM_028745" /product="Phox-associated domain,Phox-like,Sorting nexin isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05200.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s18360.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc637t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5363t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc637t13" mRNA complement(join(17859809..17859837,17859958..17860147, 17860675..17860810,17860944..17861023,17861211..17861734, 17861880..17861948,17862247..17862391,17862563..17862666, 17862769..17864008,17864087..17864226,17864363..17864540, 17864628..17865021,17866816..17867290)) /locus_tag="TCM_028745" /product="Phox-associated domain,Phox-like,Sorting nexin isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05200.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s05200.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc637t6; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc637t13; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5363t1" mRNA complement(join(17859809..17859837,17859958..17860147, 17860675..17860810,17860944..17861023,17861211..17861584, 17861689..17861948,17862247..17862391,17862563..17862666, 17862769..17864008,17864087..17864226,17864363..17864540, 17864628..17865021,17866816..17867290)) /locus_tag="TCM_028745" /product="Phox-associated domain,Phox-like,Sorting nexin isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05200.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s05200.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc637t7; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc637t13; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5363t1" CDS complement(join(<17859809..17859837,17859958..17860147, 17860675..17860810,17860944..17861023,17861211..17861584, 17861689..17861734,17861880..17861948,17862247..17862391, 17862563..17862666,17862769..17864008,17864087..17864226, 17864363..17864540,17864628..17865021,17866816..17866921)) /locus_tag="TCM_028745" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Phox-associated domain,Phox-like,Sorting nexin isoform 2" /protein_id="EOY26789.1" /db_xref="Phytozome:POPTR_0001s18360.1" /db_xref="TAIR:AT1G15240.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RQN0" /translation="MNRSKQVTARDLVEEAKKRIVILAICVVGLSYLMSLTSSSVLVN LPAAAALIILLRYFSLDYEMRRKAAVYNSKPASTNALNTKQPPEYLKAVERSDWRRKV NSPVVEDAIDHFTRHLISEWVTDLWYSRLTPDREGPEELVQIMNGVLGEFSDRMRNIN LIELLTRDFINLICSHLELFRLNQAKIEKQKSGPLTIKDRDTEIRCVLAAENKLHPAL FSAEAEHKVLQHLMDGLISFTFRPEDLQCSFFRYIVRELLACAVMRPVLNLVSPRFIN ERIESAVISMTKAKGGFNAAQDASQHKPNGSSRISSDHFSKFLDPSVTGVELVQLKTD QPRAAGGTAAADNLNGTHLSKDPLLSLDTRSSRSWSSVPLNSQTGVEGGIQRHRSGGE WGAMLDLISRRKTEALAPENFENMWTKGRNYKKKEGEKRLIEQVPQHSSIRNAATMDH SKAVSKTREKYPIKHNSSESSASQSALTDQRKIEKSFPHEPKSVSYCSSVASYQEDDE HSLVDLEEVESESSDSFTSEEEETGNVTGLDSPGTKVWDGKSNRNLTVSHIHHPLENP EGHMAKKAGGRRVRYQRLTRTPSSRKRSRLTSQKLPVWQEVERTSFLSGDGQDILNSL NGHGKADDSSDDSDAEFFGRVHSGATASSSAASISISESRSLTANSLQNSLVVDSFFK LRCEVLGANIVKSGSRMFAVYSISVTDVNNNNSWSIKRRFRHFEELHQRLKQFPDYKL HLPPKHFLSTGLDVYVIRERCKWLDGYLKKLLQLPTISGSIEVWDFLSVDSQTYVFSN SFSIVETLSVDLDDNPSEKIKKASNVMGPLMGSLSSRREQLDTGSKEPALQMKLNLAT DGLRNAKDISYSPSKFPTKERGKSLEESGSDSDTRLQNNSVVRDMGKNAKGKENKRTE DTSELLLDAATYPILPTEWVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQILQL GMGDAFDDWLIEKIQLLRKGSVVASGIKRIEQILWPDGIFITKHPKRQRPPSSSRPSQ ASPRSPQSPEISSPRFSDEQQKLEAERRAKFVYELMIDNAPTAIVGL" CDS complement(join(17861581..17861584,17861689..17861948, 17862247..17862391,17862563..17862666,17862769..17864008, 17864087..17864226,17864363..17864540,17864628..17865021, 17866816..17866921)) /locus_tag="TCM_028745" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Phox-associated domain,Phox-like,Sorting nexin isoform 4" /protein_id="EOY26791.1" /db_xref="Phytozome:POPTR_0003s05200.1" /db_xref="TAIR:AT1G15240.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RQN0" /translation="MNRSKQVTARDLVEEAKKRIVILAICVVGLSYLMSLTSSSVLVN LPAAAALIILLRYFSLDYEMRRKAAVYNSKPASTNALNTKQPPEYLKAVERSDWRRKV NSPVVEDAIDHFTRHLISEWVTDLWYSRLTPDREGPEELVQIMNGVLGEFSDRMRNIN LIELLTRDFINLICSHLELFRLNQAKIEKQKSGPLTIKDRDTEIRCVLAAENKLHPAL FSAEAEHKVLQHLMDGLISFTFRPEDLQCSFFRYIVRELLACAVMRPVLNLVSPRFIN ERIESAVISMTKAKGGFNAAQDASQHKPNGSSRISSDHFSKFLDPSVTGVELVQLKTD QPRAAGGTAAADNLNGTHLSKDPLLSLDTRSSRSWSSVPLNSQTGVEGGIQRHRSGGE WGAMLDLISRRKTEALAPENFENMWTKGRNYKKKEGEKRLIEQVPQHSSIRNAATMDH SKAVSKTREKYPIKHNSSESSASQSALTDQRKIEKSFPHEPKSVSYCSSVASYQEDDE HSLVDLEEVESESSDSFTSEEEETGNVTGLDSPGTKVWDGKSNRNLTVSHIHHPLENP EGHMAKKAGGRRVRYQRLTRTPSSRKRSRLTSQKLPVWQEVERTSFLSGDGQDILNSL NGHGKADDSSDDSDAEFFGRVHSGATASSSAASISISESRSLTANSLQNSLVVDSFFK LRCEVLGANIVKSGSRMFAVYSISVTDVNNNNSWSIKRRFRHFEELHQRLKQFPDYKL HLPPKHFLSTGLDVYVIRERCKWLDGYLKKLLQLPTISGSIEVWDFLSVDSQVDFYFP FFFERKNSCSFLFYFLGREVGREAVSDFFPFMYLLLYALCNADICILKFFFYRRNIVS " CDS complement(join(17861666..17861734,17861880..17861948, 17862247..17862391,17862563..17862666,17862769..17864008, 17864087..17864226,17864363..17864540,17864628..17865021, 17866816..17866921)) /locus_tag="TCM_028745" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Phox-associated domain,Phox-like,Sorting nexin isoform 3" /protein_id="EOY26790.1" /db_xref="Phytozome:POPTR_0003s05200.1" /db_xref="TAIR:AT1G15240.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RQN0" /translation="MNRSKQVTARDLVEEAKKRIVILAICVVGLSYLMSLTSSSVLVN LPAAAALIILLRYFSLDYEMRRKAAVYNSKPASTNALNTKQPPEYLKAVERSDWRRKV NSPVVEDAIDHFTRHLISEWVTDLWYSRLTPDREGPEELVQIMNGVLGEFSDRMRNIN LIELLTRDFINLICSHLELFRLNQAKIEKQKSGPLTIKDRDTEIRCVLAAENKLHPAL FSAEAEHKVLQHLMDGLISFTFRPEDLQCSFFRYIVRELLACAVMRPVLNLVSPRFIN ERIESAVISMTKAKGGFNAAQDASQHKPNGSSRISSDHFSKFLDPSVTGVELVQLKTD QPRAAGGTAAADNLNGTHLSKDPLLSLDTRSSRSWSSVPLNSQTGVEGGIQRHRSGGE WGAMLDLISRRKTEALAPENFENMWTKGRNYKKKEGEKRLIEQVPQHSSIRNAATMDH SKAVSKTREKYPIKHNSSESSASQSALTDQRKIEKSFPHEPKSVSYCSSVASYQEDDE HSLVDLEEVESESSDSFTSEEEETGNVTGLDSPGTKVWDGKSNRNLTVSHIHHPLENP EGHMAKKAGGRRVRYQRLTRTPSSRKRSRLTSQKLPVWQEVERTSFLSGDGQDILNSL NGHGKADDSSDDSDAEFFGRVHSGATASSSAASISISESRSLTANSLQNSLVVDSFFK LRCEVLGANIVKSGSRMFAVYSISVTDVNNNNSWSIKRRFRHFEELHQRLKQFPDYKL HLPPKHFLSTGLDVYVIRERCKWLDGYLKKLLQLPTISGSIEVWDFLSVDSQTYVFSN SFSIVETLSGDLDLIQ" mobile_element complement(17865515..17865560) /note="source:CACAO_M_E14153_F378_scaffold_3 1784 1830" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17867656..17867819) /note="source:scaffold_7_CACTA_0795 2863 3025" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17868916..17870002 /note="source:MITE_hAT_22 1 1092" /mobile_element_type="transposon:TIR/MITE" gene 17872194..17877870 /locus_tag="TCM_028747" /note="dbxref CacaoGD:Thecc1EG028747" mRNA join(17872194..17872926,17874065..17874574, 17875380..17875466,17875560..17875630,17875982..17876058, 17876217..17876364,17876646..17876807,17877140..17877870) /locus_tag="TCM_028747" /product="Proline extensin-like receptor kinase 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0275s00210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037873t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s05220.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04769t00001" CDS join(17872590..17872926,17874065..17874574, 17875380..17875466,17875560..17875630,17875982..17876058, 17876217..17876364,17876646..17876807,17877140..17877448) /locus_tag="TCM_028747" /note="paralog of Thecc1EG037873t1" /codon_start=1 /product="Proline extensin-like receptor kinase 1" /protein_id="EOY26792.1" /db_xref="Phytozome:POPTR_0003s05220.1" /db_xref="TAIR:AT1G52290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C8F2" /translation="MSTPPSPSPTSPPSSSNTTSPPAALPPSTNTSSSVSPPPPAAAP PNGTSPVAQESPPSGGLPRGTLAGLIVGVGLGAIIVLIGVGIFVIFYRRRKRKLAQNY SGGPPPQGPKVDPQHWQHNAPQVAGLPKPTPPPGIAPHLHQPLVNEYASAEPPSTSTS LGFEKPSHPLASPGMGIGHSLGTFTYEDLALATDNFSDPNLIGQGGFGYVHKGVLKNG KVVAVKQLKAGSGQGEREFQAEVDIISRVHHRHLVSLVGYCITGDKRLLVYEFVPNNT LEFHLHGKDRPVMNWSTRLKIALGAAKGLAYLHEDCQPKIIHRDIKAANILLDNGFEA KVADFGLAKYSLDTDTHVSTRVMGTFGYMAPEYASSGKLTEKSDVFSFGIVLLGLITG RRPVDKAQPFFDDSIVDWARPLLSQALEQGNFDAFVDPRLQKDYDSSELTQMVACAAA CVRHSARHRPRMSQIARTLEGNMSLDDLNEGITPGHSTVFSSYGSSDYSATQYKEDIK KFRKMALESQELGSSEYSGHTSDYGLNPSSSSTEGQHTTQEMDTSKVEKESKDVSGSS " gene 17877992..17881512 /locus_tag="TCM_028748" /note="dbxref CacaoGD:Thecc1EG028748" mRNA join(17877992..17878508,17878870..17878948, 17879660..17879806,17879880..17879960,17880099..>17880214) /locus_tag="TCM_028748" /product="RAB GTPase G3D isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017061001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037872t1" /inference="similar to AA sequence:frave:gene25744" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc864t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16000t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc695t8_C2" mRNA join(17878189..17878508,17878704..17878730, 17878849..17878948,17879660..17879806,17879880..17879960, 17880099..17880244,17881131..17881512) /locus_tag="TCM_028748" /product="RAB GTPase G3D isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017061001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037872t1" /inference="similar to AA sequence:ricco:30146.m003584" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16000t1" CDS join(17878456..17878508,17878704..17878730, 17878849..17878948,17879660..17879806,17879880..17879960, 17880099..17880244,17881131..17881200) /locus_tag="TCM_028748" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30146.m003584; paralog of Thecc1EG037872t1" /codon_start=1 /product="RAB GTPase G3D isoform 1" /protein_id="EOY26793.1" /db_xref="TAIR:AT1G52280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LS94" /translation="MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGAD FLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNW REEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK EGFNVDAAFECIAKNALKNEPEEEIYLPETIDVAGGGRSQRSTGCEC" CDS join(17878456..17878508,17878870..17878948, 17879660..17879806,17879880..17879960,17880099..>17880212) /locus_tag="TCM_028748" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene25744; paralog of Thecc1EG037872t1" /codon_start=1 /product="RAB GTPase G3D isoform 2" /protein_id="EOY26794.1" /db_xref="TAIR:AT1G52280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LS94" /translation="MASRRRMLLKVIILGDSGNQYKATIGADFLTKEVQFEDRLFTLQ IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF PFVVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIAK" gene 17882195..17882966 /locus_tag="TCM_028749" /note="dbxref CacaoGD:Thecc1EG028749" mRNA 17882195..17882966 /locus_tag="TCM_028749" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30146.m003583" /inference="similar to AA sequence:TAIR:AT1G15230.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08639t00001" CDS 17882263..17882808 /locus_tag="TCM_028749" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26795.1" /db_xref="TAIR:AT1G15230.1" /translation="MEATRGREATGFLDMVLPPRLEDAGLEDCALPPDSIHEAFRKAA SAVKSRGATFFHSDDEDDDEPGCGDDPFPDSAKCSSEFLASLPCQDMSDVLVVGEPLD PASDSVGGCVKVKEGGREVVEGRDTVVVGGDGVEAGDGRGCIDDELKGLEIGRKERRK NENQEEEETGKEKPILVEGFA" gene 17888341..17892342 /locus_tag="TCM_028751" /note="dbxref CacaoGD:Thecc1EG028751" mRNA join(17888341..17889140,17889538..17889697, 17889979..17890179,17890258..17890322,17890408..17890435, 17890523..17890614,17890757..17890843,17890982..17891032, 17891131..17891352,17891474..17891578,17891663..17891803, 17891933..17892342) /locus_tag="TCM_028751" /product="Sulfite exporter TauE/SafE family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037147t1" /inference="similar to AA sequence:ricco:30146.m003580" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:PASA:2:TSA:puevd3b027806t1a2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1658t2" mRNA join(17888341..17889140,17889538..17889697, 17889979..17890179,17890258..17890322,17890408..17890435, 17890523..17890614,17890757..17890843,17890982..17891032, 17891131..17891352,17891485..17891578,17891663..17891803, 17891933..17892342) /locus_tag="TCM_028751" /product="Sulfite exporter TauE/SafE family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037147t1" /inference="similar to AA sequence:ricco:30146.m003580" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1658t2" CDS join(17888907..17889140,17889538..17889697, 17889979..17890179,17890258..17890322,17890408..17890435, 17890523..17890614,17890757..17890843,17890982..17891032, 17891131..17891352,17891485..17891578,17891663..17891803, 17891933..17892018) /locus_tag="TCM_028751" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30146.m003580; paralog of Thecc1EG037147t1" /codon_start=1 /product="Sulfite exporter TauE/SafE family protein, putative isoform 1" /protein_id="EOY26796.1" /db_xref="TAIR:AT2G25737.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7A0" /translation="MWGSSNMIAGGRSNQWRLISTAFVLIGFLAVDLVLVTAEPRLSQ AVSGYNETQEKNYVRKALKFLELNSKPRYEHEWPDMRFGWKIVVGSILGFVGAAFGSV GGVGGGGIFVPMLALIIGFDPKSSTAISKCMITGAAAATVCYNIRQRHPTLELPLIDY DLALLFQPMLVLGISIGVGFNVIFADWMITILLIILFIGMSTKSFFKGVGTWKKETIK KKEAARQLELNGNARDAVEIKTEHEATTNDTQTGDKELGKSKVSLIENIRWKELGLLI VVWILILALQIAKNYSTTCSVEYWVLNFLQIPVAVGVSSYEAVCLYKGRRRIASKGDV VANWRVHKLVIYCAFGLLAGILGGMLGLGGGFILGPLFLEMGIPPQVSSATSTFAMLF SASMSVVEYYLLKRFPVPYALYLSLVATIAAFVGQHVVGKVIKILGRASIIIFILAGM IFGSAISLGGLGIAKMIKRIERKEYMGFDDICSYQP" CDS join(17888907..17889140,17889538..17889697, 17889979..17890179,17890258..17890322,17890408..17890435, 17890523..17890614,17890757..17890843,17890982..17891032, 17891131..17891352,17891474..17891557) /locus_tag="TCM_028751" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30146.m003580; paralog of Thecc1EG037147t1" /codon_start=1 /product="Sulfite exporter TauE/SafE family protein, putative isoform 2" /protein_id="EOY26797.1" /db_xref="TAIR:AT2G25737.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7A0" /translation="MWGSSNMIAGGRSNQWRLISTAFVLIGFLAVDLVLVTAEPRLSQ AVSGYNETQEKNYVRKALKFLELNSKPRYEHEWPDMRFGWKIVVGSILGFVGAAFGSV GGVGGGGIFVPMLALIIGFDPKSSTAISKCMITGAAAATVCYNIRQRHPTLELPLIDY DLALLFQPMLVLGISIGVGFNVIFADWMITILLIILFIGMSTKSFFKGVGTWKKETIK KKEAARQLELNGNARDAVEIKTEHEATTNDTQTGDKELGKSKVSLIENIRWKELGLLI VVWILILALQIAKNYSTTCSVEYWVLNFLQIPVAVGVSSYEAVCLYKGRRRIASKGDV VANWRVHKLVIYCAFGLLAGILGGMLGLGGGFILGPLFLEMGIPPQILCRCQVPRPPL PCFFQHPCQLLNTIF" gene 17892664..17894824 /locus_tag="TCM_028752" /note="dbxref CacaoGD:Thecc1EG028752" mRNA join(17892664..17893292,17893596..17893681, 17893760..17893852,17894093..17894824) /locus_tag="TCM_028752" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.22 coverage" CDS join(17893240..17893292,17893596..17893681, 17893760..17893852,17894093..17894205) /locus_tag="TCM_028752" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26798.1" /translation="MLSMSLGSAVANEDSKDRPTSWEHFLKWNTDHCLAILVRYDKLF RAVLFPNFLIGSYQRSFNGIAAKLTNQEAKELAARSAYRTYRSIKNSARAGYVVRRAC KSHVIRKVSLIV" gene complement(17894991..17901353) /locus_tag="TCM_028753" /note="dbxref CacaoGD:Thecc1EG028753" mRNA complement(join(17894991..17895495,17895580..17895633, 17896145..17896279,17896602..17896682,17897181..17897249, 17897329..17897400,17897505..17897594,17897669..17897749, 17898340..17898458,17898755..17898920,17900220..17900349, 17900469..17901353)) /locus_tag="TCM_028753" /product="PDI-like 1-6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18400.1" /inference="similar to AA sequence:Phytozome:GSVIVT01017063001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01202t00001" CDS complement(join(17895400..17895495,17895580..17895633, 17896145..17896279,17896602..17896682,17897181..17897249, 17897329..17897400,17897505..17897594,17897669..17897749, 17898340..17898458,17898755..17898920,17900220..17900349, 17900469..17900989)) /locus_tag="TCM_028753" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="PDI-like 1-6 isoform 1" /protein_id="EOY26799.1" /db_xref="Phytozome:GSVIVT01017063001" /db_xref="TAIR:AT3G16110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A3KPF5" /translation="MLFPQKPTSTFLLLTLTLLLLVSFAININASDSTSAEDDFDDLE QLLALDEQEDQQQQGQEQEFSNRFSEAEVLSKAQRIVLELNSDNSKRVIDENELVMVL GYAPWCVRSAVLMPQFAEAATSLKELGSPLLMAKLDAERYPKVASLLDIKGFPTLLLF VNGTSQAYTGGFSAEEIVIWARKKTGVPVIRISTVTEAEEFLKKHQMFVIGLFEKFEG PDYESFIKAATSDNEIQFVETSSIEVAKVLYPDIKATNLFLGIVKNEPERYTVYEGTF ETESILQFLDYNKFPLVTKLTELNSVRVYSSPIKLQVYVFAKADDFKTLLEPLQDVAR KFTKKVMFMYIDIMDENLAKPFLTLFGLEEAKNTLVTAFDNKGSSKFLLQSDPTPSNI EEFCSGLLHGSISTYFKSQPIPDNKNASVLAVVGKTFDDLVLNSPKNVLLEVYTPWCI NCETTSKQVEKLAKHFKGVHNLVFAKIDASANEHPKLQVDDYPTLLLYKAGDKNNPIK LSTKSGSKELAAFINKHVRTKDQVAKDEL" mRNA complement(join(17895607..17895633,17896145..17896279, 17896401..17896528,17896602..17896682,17897181..17897249, 17897329..17897400,17897505..17897594,17897669..17897749, 17898340..17898458,17898755..17898920,17900220..17900349, 17900469..17901254)) /locus_tag="TCM_028753" /product="PDI-like 1-5 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18400.1" /inference="similar to AA sequence:Phytozome:GSVIVT01017063001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc877t5; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc877t5; inference alignment:Newbler:10:TSA:cgbaL_g01202t00001" CDS complement(join(17896502..17896528,17896602..17896682, 17897181..17897249,17897329..17897400,17897505..17897594, 17897669..17897749,17898340..17898458,17898755..17898920, 17900220..17900349,17900469..17900989)) /locus_tag="TCM_028753" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="PDI-like 1-5 isoform 2" /protein_id="EOY26800.1" /db_xref="Phytozome:GSVIVT01017063001" /db_xref="TAIR:AT3G16110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A3KPF5" /translation="MLFPQKPTSTFLLLTLTLLLLVSFAININASDSTSAEDDFDDLE QLLALDEQEDQQQQGQEQEFSNRFSEAEVLSKAQRIVLELNSDNSKRVIDENELVMVL GYAPWCVRSAVLMPQFAEAATSLKELGSPLLMAKLDAERYPKVASLLDIKGFPTLLLF VNGTSQAYTGGFSAEEIVIWARKKTGVPVIRISTVTEAEEFLKKHQMFVIGLFEKFEG PDYESFIKAATSDNEIQFVETSSIEVAKVLYPDIKATNLFLGIVKNEPERYTVYEGTF ETESILQFLDYNKFPLVTKLTELNSVRVYSSPIKLQVYVFAKADDFKTLLEPLQDVAR KFTKKVMFMYIDIMDENLAKPFLTLFGLEEAKNTLVTAFDNKGSSKFLLQSDPTPSNI EEFCSGLLHGSISTYFKSQPIPDNKNASVLAVVGKTFDDLVLNSPKNVLLESMPMRHV S" gene complement(17901586..17904396) /locus_tag="TCM_028754" /note="dbxref CacaoGD:Thecc1EG028754" mRNA complement(join(17901586..17902473,17902599..17902784, 17903359..17904396)) /locus_tag="TCM_028754" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037866t1" /inference="similar to AA sequence:ricco:30146.m003578" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10102t00001" CDS complement(join(17902195..17902473,17902599..17902784, 17903359..17903811)) /locus_tag="TCM_028754" /note="dbxref ricco:30146.m003578; paralog of Thecc1EG037866t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26801.1" /db_xref="TAIR:AT1G45688.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GX27" /translation="MMLSAKSESDITSLAPSSPSRSPKRPVYYVQSPSRDSHDGDKSS SMQPSPMESPSHPSSFGRHSRNSSASRFSGIFRSSSGRKGSRKRNDKGWPECNVIMEE GSYDEYEDKAFTRRFQALIAVLTFVVLFTVFCLIIWGASKPYKAEITVKSLAVHNFYI GEGSDFSGVPTKMLTVNGSLKLSVYNPATIFGIHVSSNPINLIYSEIPVATGQLKKYY QPRKSRRTVSVVLEGKKVPLYGAGSSLTFTQNGAEIPLTLKFEVHSRGNVVGKLVRTK HRRQISCPLVMDSTRTNPIKFKKGTCTYD" mobile_element 17905704..17907829 /note="source:scaffold_5_CACTA_0615 176 2253" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17907835..17908107 /note="source:scaffold_8_CACTA_0858 14239 14532" /mobile_element_type="transposon:TIR/CACTA" gene 17908074..17909814 /locus_tag="TCM_028755" /note="dbxref CacaoGD:Thecc1EG028755" mRNA join(17908074..17908194,17908614..17909814) /locus_tag="TCM_028755" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.44 coverage" CDS join(17908134..17908194,17908614..17908837) /locus_tag="TCM_028755" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26802.1" /translation="MLPSPSDWCSLFLVSWGAPIGSNPGSGKFFADLFYLSKRDRVQN SPTVGVTCRFFVYDQSKTVSFIINASQDESQTQWVEGDGNMQFVGNSLTD" gene complement(17910180..17911248) /locus_tag="TCM_028756" /note="dbxref CacaoGD:Thecc1EG028756" mRNA complement(join(17910180..17910508,17910739..17911248)) /locus_tag="TCM_028756" /product="Cryptic loci regulator protein 1, putative" /inference="alignment:exonerate- protein:2:ricco:29917.m002021" /inference="similar to AA sequence:TAIR:AT3G27520.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12169t00001" CDS complement(join(17910350..17910508,17910739..17911158)) /locus_tag="TCM_028756" /codon_start=1 /product="Cryptic loci regulator protein 1, putative" /protein_id="EOY26803.1" /db_xref="TAIR:AT3G27520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PC69" /translation="MDPPSSSQTATATASDEWELYNDDGFIYKRKKRPRFLTEPAPLP ADPEEEEKRRREWKRKNLLRVREKYKKEIKEWEILSNTLKAMQEKALEFQVQQQERRK LRETEEKQRTASSSGSEKKDKDKKENASGSLVDELLLQVEAQDMTIRDVSNLCDIAEA MCNAQEEQLKLSYFDLPIWASPRDLMASLCDE" mobile_element complement(17912273..17914248) /note="source:scaffold_5_CACTA_0615 179 2253" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17917497..17917755 /note="source:CACAO_M_E5627_F4_scaffold_2 19182 19397" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17917514..17917530 /note="source:scaffold_8_CACTA_0858 8455 8503" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17917531..17917762) /note="source:CACAO_M_S_E15657_F60_scaffold_2 607 812" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17917676..17918369) /note="source:INTACT686_F300_scaffold_3-int 7077 7741" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17917763..17917845 /note="source:scaffold_8_CACTA_0858 8504 8759" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17920022..17920164 /note="source:scaffold_5_CACTA_0607 13916 14068" /mobile_element_type="transposon:TIR/CACTA" gene 17921140..17921851 /locus_tag="TCM_028757" /note="dbxref CacaoGD:Thecc1EG028757" mRNA join(17921140..17921371,17921593..17921851) /locus_tag="TCM_028757" /product="RHO guanyl-nucleotide exchange factor 11" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017066001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037861t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s05160.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g12862t00001" CDS join(17921234..17921371,17921593..17921748) /locus_tag="TCM_028757" /note="paralog of Thecc1EG037861t1" /codon_start=1 /product="RHO guanyl-nucleotide exchange factor 11" /protein_id="EOY26804.1" /db_xref="Phytozome:POPTR_0003s05160.1" /db_xref="TAIR:AT1G52240.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXB1" /translation="MLEGKALVEDTDMPLRMQIQAMSSASQALDLYDVLDCKSIAGYI KKEFDSKYGNGWQCVVGSNFGCFFTHSKGTFIYFTLERLKFLIFKGASSSTSP" mobile_element complement(17922506..17922760) /note="source:scaffold_4_CACTA_0482 16794 17048" /mobile_element_type="transposon:TIR/CACTA" gene complement(17923919..17926689) /locus_tag="TCM_028758" /note="dbxref CacaoGD:Thecc1EG028758" mRNA complement(join(17923919..17924753,17926025..17926689)) /locus_tag="TCM_028758" /product="D-isomer specific 2-hydroxyacid dehydrogenase family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400013394" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028760t1" /inference="similar to AA sequence:ricco:30146.m003575" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06829t00001" CDS complement(join(17924235..17924753,17926025..17926450)) /locus_tag="TCM_028758" /note="dbxref ricco:30146.m003575; paralog of Thecc1EG028760t1" /codon_start=1 /product="D-isomer specific 2-hydroxyacid dehydrogenase family protein" /protein_id="EOY26805.1" /db_xref="TAIR:AT1G79870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CA90" /translation="MNNTCVLVTCPMFTYLEQELETRFNLFKLWDHSSSKAEFFNNYS SSIKAVVGNTKVGADAKLIDSLPNLEIVASYSVGLDKIDLDKCKQRGIKVTNTPDVLT DDVADLAIGLALAVLRKVCVCDQFVRSGNWINGDFGLATKFSGKSVGIVGLGRIGSAI AKRAEAFQCPISYHSRSKKPNTNYKYYLNIVDLAANCEILVVACALTEETHHIVNRKV IDALGPKGFLINIARGAHVDEPELVSALLEGRLGGAGLDVFENEPEPPEQLFALDNVV LVPHVGSDTGETSKAMADLVISNLEAHFKGKPLLTPVI" mobile_element complement(17934905..17937667) /note="source:INTACT7_F3_scaffold_8-int 1572 4415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17937664..17937695) /note="source:CACAO_M_S_E119191_F3_scaffold_9 1584 1615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17937675..17937793) /note="source:CACAO_M_E84368_F4_scaffold_10 12188 12296" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17937691..17938468 /note="source:CACAO_M_E42395_F3_scaffold_5 964 1771" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17938849..17943167) /locus_tag="TCM_028760" /note="dbxref CacaoGD:Thecc1EG028760" mRNA complement(join(17938849..17939580,17942412..17943167)) /locus_tag="TCM_028760" /product="D-isomer specific 2-hydroxyacid dehydrogenase family protein" /inference="alignment:exonerate- protein:2:ricco:30146.m003573" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028758t1" /inference="similar to AA sequence:ricco:30146.m003573" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09294t00001" CDS complement(join(17939062..17939580,17942412..17942834)) /locus_tag="TCM_028760" /note="dbxref ricco:30146.m003573; paralog of Thecc1EG028758t1" /codon_start=1 /product="D-isomer specific 2-hydroxyacid dehydrogenase family protein" /protein_id="EOY26806.1" /db_xref="TAIR:AT1G79870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CA90" /translation="MESIGVLMVCPMNSYLEHELEKRFNLFRFWTVPEKSAFLATNKN SIRAVVGNSSAGADAELIEVLPKLEIVASFSVGLDKIDLAKCKEKGIRVTNTPDVLTD DVADLAIGLMLAVLRKLCESDRYVRSGKWKKGDYRLTTKFTGKKVGIIGLGRIGMAVA KRAEAFSCPISYYSRTEKPEIKYKYYPGVVELAANCDILVVACSLTEETLHIINREVI DALGPKGVLINVGRGPHVDEPELVSALVERRLGGAGLDVFEHEPEVPEELFGLDNVVL LPHVGSGTVETRQAMADLVIGNLEAHFLNRPLLTPVV" mobile_element 17944089..17944167 /note="source:INTACT686_F300_scaffold_3-int 7258 7332" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17944471..17944706 /note="source:CACAO_M_E84368_F4_scaffold_10 12188 12352" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17944707..17946845 /note="source:CACAO_M_E84368_F4_scaffold_10 5356 7489" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17946843..17949891 /note="source:CACAO_M_E33018_F264_scaffold_4 12 3041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17949849..17949901) /note="source:CACAO_M_E3326_F17_scaffold_1 9154 9206" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17950326..17951060 /note="source:CACAO_M_E639_F17_scaffold_1 4247 5013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17951064..17953832) /note="source:INTACT528_F17_scaffold_6-int 1134 3910" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17953830..17954217 /note="source:CACAO_M_E639_F17_scaffold_1 6751 7138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17956779..17959790) /note="source:CACAO_M_E22722_F42_scaffold_3 7274 10316" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17958930..17962086 /note="source:CACAO_M_E52352_F42_scaffold_7 2217 5408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17960781..17962095) /note="source:INTACT1263F_F42_scaffold_7-int 4575 5887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17962096..17963732 /note="source:CACAO_M_E14787_F15_scaffold_3 1 1636" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17964031..17964516) /note="source:CACAO_M_E43833_F15_scaffold_5 682 1167" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17964617..17965291) /note="source:CACAO_M_E49110_F15_scaffold_6 1 675" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17965292..17969819) /note="source:CACAO_M_E58440_F42_scaffold_9 1 4576" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17969285..17976027 /locus_tag="TCM_028763" /note="dbxref CacaoGD:Thecc1EG028763" mRNA join(17969285..17969397,17969944..17970015, 17972739..17973321,17973637..17973753,17973929..17974083, 17974206..17974280,17974400..17974672,17974769..17975089, 17975348..17976027) /locus_tag="TCM_028763" /product="RHO guanyl-nucleotide exchange factor 12" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05120.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037859t1" /inference="similar to AA sequence:ricco:30146.m003571" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1699t1" CDS join(17973036..17973321,17973637..17973753, 17973929..17974083,17974206..17974280,17974400..17974672, 17974769..17975089,17975348..17975746) /locus_tag="TCM_028763" /note="dbxref ricco:30146.m003571; paralog of Thecc1EG037859t1" /codon_start=1 /product="RHO guanyl-nucleotide exchange factor 12" /protein_id="EOY26807.1" /db_xref="TAIR:AT1G79860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CA89" /translation="MVRALEQEQENYRSRLFHFRDMNENTGRHAKSLSIESASRLEEA GMGEEVAVRSQGSRTQNDLLSLNRGDRGLRSRIGKEEMAAAFQAREKQLLNDMEQMKE KFAKLLLGEDMSGGGKGVSSALALSNAITNLAASVFGEQSRLEPMSAERKGRWRKEID WLLSVTDHIVEFVPSQQKNKDGSNMEIMVTKQRADLHMNIPALRKIDTLLTDCLDNFK DQNEFFYLSRDAPDSEKGNNKRKDDKWWLPTVKVPQDGLSDASRKNLQYQKDCVSQVL KAAMAINAQVLSEMEVPENYIESLPKNGRASLGDSIYRSITVEFFDPDQFLSTMDLSS EHKIVDLKNRIEASIIIWKRKMNQKDGKSAWGSAVSLEKRELFEERAETILLIIKQRF PGIPQSSLDISKIQYNRDVGQAVLESYSRILESLAFTVLSRIEDVLHADFVAQNPSQA SCKRNPLTDDSQPILVLPNPKYDADTPNSMTLSDLLTWSLDQNDSEANKDSTDELSKE GDAKHMQKLNVVTNKKVSYLESLGGLRSPTARH" gene complement(17976384..17978137) /locus_tag="TCM_028764" /note="dbxref CacaoGD:Thecc1EG028764" mRNA complement(join(17976384..17976759,17977576..17977702, 17977853..17978137)) /locus_tag="TCM_028764" /product="Photosystem I subunit H2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05110.1" /inference="similar to AA sequence:ricco:30146.m003570" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00179t00003" CDS complement(join(17976580..17976759,17977576..17977702, 17977853..17977980)) /locus_tag="TCM_028764" /note="dbxref ricco:30146.m003570" /codon_start=1 /product="Photosystem I subunit H2" /protein_id="EOY26808.1" /db_xref="TAIR:AT1G52230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SUI7" /translation="MASVATLAAVQPTTIKGLGGSSLSGTKLFVKPSRQSFKPKNYRA GAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDASSPYNSLQSKFFETFAAPFTKRGLL LKFLLLGGGSLLLFLSATASDDLLPIKKGPQLPPKPGPRGKI" gene 17978232..17987146 /locus_tag="TCM_028765" /note="dbxref CacaoGD:Thecc1EG028765" mRNA join(17978232..17978341,17980312..17980398, 17980496..17980559,17980663..17980693,17981791..17982434, 17982546..17983067,17983500..17986053,17986464..17986530, 17986999..17987146) /locus_tag="TCM_028765" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="alignment:exonerate- protein:2:frave:gene20290.7" /inference="similar to AA sequence:frave:gene20290" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc6844t1" CDS join(17980330..17980398,17980496..17980559, 17980663..17980693,17981791..17982434,17982546..17983067, 17983500..17985937) /locus_tag="TCM_028765" /note="dbxref frave:gene20290" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY26809.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B1E1" /translation="MHNSILDVMICSGPGCSSIGDGFCQISWSYSGTAGDYCNGDDST NKILFTFILKWVCNLQYTLGNISQGSRTVDSYFIELKGIWEELRSYRPLPHCKCGNCN SDCFKAYSDQYQKDMVFRFLNGLNDSFSAIRSQIIMMDPIPTLDKVYSLVQREETQRS LLIQGQAVFESSAMMTVVETRKKCTRKDISRDHCGKKGHTKDKCYKVIGFLEDFKFTK SKPNFMKAKAVANNATSIHEGPESDGCKIEQLEEGTGTGSMSQLLAIKQQISITLGHL CFHTSNNLPPNLKNVNAQMIKQNHWIVDSGATDHICYSLDSFESTKTVNNCYVELPND RKATVSHIGIVKLSPTLTLKNVLHVPSFKFNLLFVGKLTQNKKTYVLFTDMHCIVQDV ISQTVIGVARAYTGLYLMQEKHVEKDTSMSGFDKLKFPFISSVNGCDSADRFHQLSCV ETLQQNGVVERKHQHILVVARALLFQSSLPTHFWGDAVMTAVHIINRVPTRLLKNKSL FELLYKRQPSYEHLRVFGSLCFVSTLSQHRKKLDQRATKCIFLGYPNNTKGYRVYDLN ANRIIISRNIVFHEGTFPFQSKQHTTWPEPFCQTLGMHTKYSPQIDSKLPNFHCQDYI PADTYSSEPNTSAQTPSTSQINDFEPNSLDTVSMPTATNNENVTSSNEHDPNENLPVR KSTRHKHAPKYMDAYHLDMPSKSHNVTAHPITKFLSTKNLSPAYKTFTTSLSYTFEPS TYHQAASYSHWRDAMSAELKALQDNETWSIIPRPLNSHVIGCKWVYKVKLNADGQIER YKARLVAKGYNQIAGFDYKETFSPVAKQTTVRVFFAIATAFNWHLTQLDVNNAFLNGD LKEEVYMDIPPGYEIQGEYPENVKLVCKLHKSLYGLKQASREWNAKITSLIIQYGFIQ SNADRSLFTMKTNNGEFFALLLYVDDILVGSYSKQAADAMKLFLSSHFKLKDLGTVKY FLGLEIARSPKGISISQRKYTLDLLEEHGLLGAKPVSTPIDYNQKLVKAQDEEKLINS IDYRQLVKKLLYLTFSRPDIAYAVQVLSQFMDKPSLEHMNAAHRVLKYLKGSLGQGIL MKSESNLMIVGYCDSDWAGCPNSRKSITRYNMFIGNSLVTWKFKKQSVVSRSSEEAKY RAMASASCEIIWLKHLLADFGIEHKVAVVLYSDSQSTIHISKNPVFHERTKHIEMDCH FIREKVIEGTIKPIYISTDLQLADLFTKALQPRQFHNLLNKMNVHNIHISS" gene 17987465..17988098 /locus_tag="TCM_028766" /note="dbxref CacaoGD:Thecc1EG028766" mRNA 17987465..17988098 /locus_tag="TCM_028766" /product="Ribosomal protein S17" /inference="alignment:exonerate- protein:2:ricco:30146.m003569" /inference="similar to AA sequence:TAIR:AT1G79850.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g10628t00001" CDS 17987503..17987961 /locus_tag="TCM_028766" /codon_start=1 /product="Ribosomal protein S17" /protein_id="EOY26810.1" /db_xref="TAIR:AT1G79850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GG36" /translation="MSITSSLQSLKLSSPFLHGSTSLSLLSKPNSSLSHQPLKTPTFL PPIRALKSLQGKVVCATNDKTVSVEVVRLAPHPKYKRRVRKKKKFQAHDPDNQFKVGD YVQLEKSRPISKTKTFIAVPVPSKNGRQEKKETGELGIPLESQQPQEQQA" gene complement(17988857..17994430) /locus_tag="TCM_028767" /note="dbxref CacaoGD:Thecc1EG028767" mRNA complement(join(17988857..17989737,17989880..17989966, 17990060..17990331,17990417..17990591,17990747..17990956, 17991914..17992015,17992144..17992521,17992631..17992825, 17993006..17993123,17993756..17994027,17994181..17994430)) /locus_tag="TCM_028767" /product="HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017073001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005412t2" /inference="similar to AA sequence:ricco:30146.m003568" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4304t1" CDS complement(join(17989354..17989737,17989880..17989966, 17990060..17990331,17990417..17990591,17990747..17990956, 17991914..17992015,17992144..17992521,17992631..17992825, 17993006..17993123,17993756..17994027,17994181..17994249)) /locus_tag="TCM_028767" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30146.m003568; paralog of Thecc1EG005412t2" /codon_start=1 /product="HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain isoform 1" /protein_id="EOY26811.1" /db_xref="TAIR:AT1G79840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GG37" /translation="MGVDMSNPPTKDFFASPALSLSLAGIFRDAGAAAAAAAANMEVE EGDEGSGGGGSGKREETVEISSENSGPARSRSEDDLLEHDDEEDDGDKSKKKKRKKYH RHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHE NSLLKHELDKLRDDNKAMRETINKACCPNCGMATTSKDGSVTTEEQQLRIENAKLKAE VEKLRAAIGKYAPGAASTSSCSAGNDQENRSSLDFYTGIFGLEKSRIMEIVNQATEEL KKMATASEPLWVRSVETGREILNYDEYVKEFSVENSSNGRPKRSIEASRETGVVFVDL PRLVQSFMDVNQWKEMFPCLVSKVATVDVICNGEAPNRNGAVQLMFAELQMLTPLVPT REVYFVRYCKQLSAEQWAIVDVSIDKVEENIDASLVKCRKRPSGCIIEDKSNGHCKVT WVEHLECQKSTVHTMYRTVVSSGLAFGARHWMATLQLQCERLVFFMATNVPTKDSTGV ATLAGRKSILKLAQRMTWSFCHAIGASSYNTWNKVPSKTGEDIRVSSRKNLNDPGEPL GVIVCAVSSVWLPVSPNALFDFLRDEAHRNEWDIMSNGGPVQSIANLAKGQDRGNAVT IQAMKSKENSMWVLQDSCTNAFESMVIFAPVDIAGMQSVITGCDSSNMAILPSGFSIL PDGLESRPLVITSRQEKSNDTEGGSLLTIAFQILTNSSPTAKLTMESVESVNTLISCT LRNIKTSLQCEDG" mRNA complement(join(<17990060..17990331,17990417..17990591, 17990747..17990956,17991914..17992015,17992144..17992521, 17992631..17992825,17993006..17993123,17993756..17994027, 17994181..17994353)) /locus_tag="TCM_028767" /product="HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017073001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005412t1" /inference="similar to AA sequence:ricco:30146.m003568" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc399t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4304t1" CDS complement(join(<17990060..17990331,17990417..17990591, 17990747..17990956,17991914..17992015,17992144..17992521, 17992631..17992825,17993006..17993123,17993756..17994027, 17994181..17994249)) /locus_tag="TCM_028767" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30146.m003568; paralog of Thecc1EG005412t1" /codon_start=1 /product="HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain isoform 2" /protein_id="EOY26812.1" /db_xref="TAIR:AT1G79840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GG37" /translation="MGVDMSNPPTKDFFASPALSLSLAGIFRDAGAAAAAAAANMEVE EGDEGSGGGGSGKREETVEISSENSGPARSRSEDDLLEHDDEEDDGDKSKKKKRKKYH RHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHE NSLLKHELDKLRDDNKAMRETINKACCPNCGMATTSKDGSVTTEEQQLRIENAKLKAE VEKLRAAIGKYAPGAASTSSCSAGNDQENRSSLDFYTGIFGLEKSRIMEIVNQATEEL KKMATASEPLWVRSVETGREILNYDEYVKEFSVENSSNGRPKRSIEASRETGVVFVDL PRLVQSFMDVNQWKEMFPCLVSKVATVDVICNGEAPNRNGAVQLMFAELQMLTPLVPT REVYFVRYCKQLSAEQWAIVDVSIDKVEENIDASLVKCRKRPSGCIIEDKSNGHCKVT WVEHLECQKSTVHTMYRTVVSSGLAFGARHWMATLQLQCERLVFFMATNVPTKDSTGV ATLAGRKSILKLAQRMTWSFCHAIGASSYNTWNKVPSKTGEDIRVSSRKNLNDPGEPL GVIVCAVSSVWLPVSPNALFDFLRDEAHRNE" mobile_element complement(18002483..18003415) /note="source:scaffold_4_CACTA_0498 1128 2085" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18005323..18006379 /note="source:INTACT72F_F343_scaffold_2-int 10274 11363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18006044..18006904) /note="source:INTACT555_F251_scaffold_2-int 10926 11789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18006459..18017196 /note="source:INTACT72F_F343_scaffold_2-int 853 11363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18016862..18018023) /note="source:CACAO_on_S_E46_scaffold_2 7655 8770" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(18018218..18018325) /note="source:INTACT59_F126_scaffold_9-int 14354 14469" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18018546..18022876) /locus_tag="TCM_028769" /note="dbxref CacaoGD:Thecc1EG028769" mRNA complement(join(18018546..18019637,18019789..18021514, 18021626..18022078,18022195..18022281,18022738..18022876)) /locus_tag="TCM_028769" /product="Serine-threonine protein kinase, plant-type, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s06050.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001779t1" /inference="similar to AA sequence:ricco:29636.m000741" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS complement(join(18019445..18019637,18019789..18021514, 18021626..18022078,18022195..18022281,18022738..18022747)) /locus_tag="TCM_028769" /note="dbxref ricco:29636.m000741; paralog of Thecc1EG001779t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY26813.1" /db_xref="TAIR:AT4G32300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SIQ7" /translation="MALVETDYASAELSNTWRNNDFISRGSVDFVDVEATIDSTIIES GSPQILWIANRDNPVENNATLEFTGDGNLVLTDADGMFIWSSNTSDSSVNYMNITGNG TLMLVEFNGLELFSTTVWSSLDYPINTWLPGQTIEEGQRLIPSVSASNWTPGQFYLSF ANDNLYAFIQSSPPQMYLKVFSEDTDGHLRVYQWDRSKASEVADILTDNRGICAYPTV SGKYGICSNGQCSCPVGNNGDTSYFQQLNSSAGCKQATPLSCHSTHLHSFIELPNVSY FSFVAAISDTDIENCKQACLENCSCKAAFFHYNSNNLSGNCSLPSQIFSLMSTSPVLD PYNSTSFIKVQRSTLVPASPESPSPSPPLAPLPSPPLARKKSIRIELIIGPLVAALIF TFILIWASVHFLRKRGSIEEEGRRKTEDDWEKSLNLATNLPTRFNYEDLRSATENFNR RIGGGGFGSVFEGTLGDGTKIAVKRLDRLGQGRKEFLAEVKTIGSIHHVNLVRLIGFC IGNSNRLLVYEHMNNGSLDKWIFHKNPATTLKWEIRKNIILDIAKGLAYLHEDCRMRI AHLDVKPENILLDGSFNAKLSDFGLARPIDRNQSHVITQMRGTRGYLAPEWLSRRITE KVDVYSFGVVILEIVCGRRNLDFSQPDEDDYLLLPVLKQKAEQNQLFDMVDSCIEGIQ QNAEEVVKMIRIAIWCLQRDYNKRPSMSMVLKVLEGLLTMEPISDYRFLTSTVVEAPA EVVMVPSSPQPASILSGPSNSQTYRNNLKNSKESHSKAFNCHGSEGFGRSNDHGTYLS SWLVDIDTMVALQLKLQGDYLELQ" mobile_element 18023378..18023453 /note="source:scaffold_5_CACTA_0596 6999 7075" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18023403..18023477) /note="source:CACAO_M_S_E14444_F98_scaffold_2 2019 2085" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18023412..18023485 /note="source:CACAO_M_E14153_F378_scaffold_3 1769 1844" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18023421..18023522 /note="source:CACAO_on_E205_scaffold_7 531 631" /mobile_element_type="transposon:TIR/Mutator" gene 18024001..18026925 /locus_tag="TCM_028770" /note="dbxref CacaoGD:Thecc1EG028770" mRNA join(18024001..18024080,18024230..18024335, 18025273..18025364,18026066..18026155,18026299..18026361, 18026577..18026614,18026783..18026925) /locus_tag="TCM_028770" /product="Thylakoid membrane phosphoprotein 14 kDa" /inference="similar to AA sequence:Phytozome:POPTR_0003s05070.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g15999t1" CDS join(18024236..18024335,18025273..18025364, 18026066..18026155,18026299..18026361,18026577..18026614, 18026783..18026837) /locus_tag="TCM_028770" /codon_start=1 /product="Thylakoid membrane phosphoprotein 14 kDa" /protein_id="EOY26814.1" /db_xref="Phytozome:POPTR_0003s05070.2" /db_xref="TAIR:AT1G52220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M812" /translation="MASITASLPPPLFLQASKTLFRTLQKPPVPCIRERQNCAFVVKA TGESSESSTSLSIVKSVQNVWDKSDEDRVGLIGLGFATIVALWASANLVSAVDKLPLI PNVLEVIGILFSLWFIYRYLLFKPDREELFQIIIKSISEIFGR" mobile_element complement(18025393..18025440) /note="source:scaffold_5_CACTA_0580 13311 13358" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18027153..18027540 /note="source:CACAO_on_E717_scaffold_9 6 416" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(18027337..18032819) /locus_tag="TCM_028771" /note="dbxref CacaoGD:Thecc1EG028771" mRNA complement(join(18027337..18027765,18028509..18028856, 18029179..18029270,18029371..18029474,18029602..18030090, 18030598..18030775,18031342..18031455,18031759..18032159, 18032712..18032819)) /locus_tag="TCM_028771" /product="Tesmin/TSO1-like CXC domain-containing protein" /inference="alignment:exonerate- protein:2:TAIR:AT3G16160.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s18550.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1671t2_C2" CDS complement(join(18027659..18027765,18028509..18028856, 18029179..18029270,18029371..18029474,18029602..18030090, 18030598..18030775,18031342..18031455,18031759..18032054)) /locus_tag="TCM_028771" /codon_start=1 /product="Tesmin/TSO1-like CXC domain-containing protein" /protein_id="EOY26815.1" /db_xref="Phytozome:POPTR_0001s18550.1" /db_xref="TAIR:AT4G29000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GG44" /translation="MRQLEIENGDFPPKTIEVVTATPCFPPKGIKSVERTRDSVKVTV KERSSPHFPPKKKLARQLIFTEFGLSPIITTSPPLPVVKPSSELHLSPRCAFSSIKSE TPIPIPLPQANIKANSGTPKGPKQCGCKQSKCLKLYCECFASREYCNGCNCADCCNNV ENGDLRKAAAEIILERNPHAFKPKIASTPCSPQNVGGDKEDTPPVGRHERGCHCKKSE CLKRYCECFQANVFCSENCKCMDCKNFEVCKGTMAASGKDDSKSKICENSKGCEGRIA ISPKDNGNRKFYRSFKGSEGLMAEIGEDCIDTKIYTQRVTAATSNATGLSGQCLSQES RKRKHLELHSNEKETLIESFSDFQKVNNLKNSCPSATLSVEPTCHIINSAMVGSFRHP YRLTLADVLHLEDTRKVCSGLAVLAEAAKQFADKVGKADVKDAAENKHGDALGAKEKD CQGGPAYFQKRVPDDLHLDGGATDAHEGRTLPHGTVKLICNEKHKQFMEPTSPKQILD RDIKNASAEQERCVLSSFRDFLEKLITFTNIKDEAFLFPYWYLVHVTGTNEFSSARAV LMEKTGTEG" gene 18032914..18049907 /locus_tag="TCM_028772" /note="dbxref CacaoGD:Thecc1EG028772" mRNA join(18032914..18033252,18038303..18038579, 18038987..18039206,18040017..18040960,18041570..18041641, 18042798..18042872,18044452..18044566,18045077..18045138, 18045248..18045295,18046026..18046310,18046398..18046457, 18046566..18046649,18046758..18046823,18046923..18047021, 18047103..18047321,18047677..18047791,18047863..18048083, 18048227..18048286,18048401..18048514,18048838..18048912, 18049031..18049907) /locus_tag="TCM_028772" /product="Golgin candidate 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05060.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s05060.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01541t00001" mobile_element 18034017..18034603 /note="source:scaffold_2_CACTA_0262 3313 3981" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18035455..18035679 /note="source:scaffold_2_CACTA_0262 4917 5134" /mobile_element_type="transposon:TIR/CACTA" CDS join(18039056..18039206,18040017..18040960, 18041570..18041641,18042798..18042872,18044452..18044566, 18045077..18045138,18045248..18045295,18046026..18046310, 18046398..18046457,18046566..18046649,18046758..18046823, 18046923..18047021,18047103..18047321,18047677..18047791, 18047863..18048083,18048227..18048286,18048401..18048514, 18048838..18048912,18049031..18049060) /locus_tag="TCM_028772" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Golgin candidate 5 isoform 1" /protein_id="EOY26816.1" /db_xref="Phytozome:POPTR_0003s05060.1" /db_xref="TAIR:AT1G79830.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVL7" /translation="MAWFSGKVSLGGFPDLAGAVNKLQESVKNIEKNFDTALGFEEKS ESSSNEGSGLWSSDRKALFDPVMALMGHKSEETAVESSGKLESSQAPPEVEEKEEAET DRSLHSPDQTTAEEDKSAVQVEKDDEHSEVVESSDNVFPDPGKTEPESEPVSVQPSES TFQNVESSDSPDNEQQKESSGLVPSESADSKEAKLEAAEIDQVEDAMAVPAESSNVVD MHESTDEQKPQTEDALEKGSPVKSEESRDSQASAGGGPDELEFLRSHSITVEETKSAH EFLLPSVVPSDEAQGMVSESVFFENDANTKRVEVDQRTNDSETDAKEEQCLSSATTMS DSADSMHELEKVKMEMKMMESALQGAARQAQAKADEIAKLMNENEQLKVVIEDLKRKS NEAEIESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVM AEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLTTKLQVEENKVESIKKDKTATEKL LQETIEKHQAELAGQKEFYTNALNAAKEAEALAEARANSEARTELESRLREAEEREAM LVQTLEELRQTLSRKEQQAVFREDMLRRDVEDLQKRYQASERRCEELITQVPESTRPL LRQIEAMQETTSRRAEAWAAVERSLNSRLQEAEAKAAAAEERERSVNERLSQTLSRIN VLEAQISCLRAEQTQLSKSIEKERQRAAENRQEYLAAKEEADTQEGRANQLEEEIREL RRKHKQELHDALVHRELLQQEVEREKAARLDLERTARVHSVAVSEQASISRHNSALEN GSLSRKLSTASSMGSMEESYFLQASLDSSDGFAEKRNIGEATLSPLYMKSMTPSAFES ALRQKEGELASYMSRLTSMESIRDSLAEELVKMTEQCEKLKAEAATLPGIRAELEALR RRHSAALELMGERDEELEELRADIVDLKEMYREQVNLLVNKIQIMSSSNG" mRNA join(<18040149..18040960,18041570..18041641, 18042798..18042872,18044452..18044566,18045077..18045138, 18045248..18045295,18046026..18046310,18046398..18046457, 18046566..18046649,18046758..18046823,18046923..18047021, 18047103..18047321,18047646..18047791,18047863..18048083, 18048227..18048286,18048401..18048514,18048838..18048912, 18049031..18049525) /locus_tag="TCM_028772" /product="Golgin candidate 5 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05060.1" /inference="similar to AA sequence:Phytozome:GSVIVT01038690001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc177t3; inference alignment:Newbler:10:TSA:cgbaB_g01541t00001" mRNA join(18040149..18040960,18041570..18041641, 18042798..18042872,18044452..18044566,18045077..18045138, 18045248..18045295,18046026..18046310,18046398..18046457, 18046566..18046649,18046758..18046823,18046923..18047021, 18047103..18047321,18047677..18047791,18047863..18048083, 18048227..18048315,18048401..18048514,18048838..18048912, 18049031..18049525) /locus_tag="TCM_028772" /product="Golgin candidate 5 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05060.1" /inference="similar to AA sequence:Phytozome:GSVIVT01038690001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc177t4; inference alignment:Newbler:10:TSA:cgbaB_g01541t00001" CDS join(<18040151..18040960,18041570..18041641, 18042798..18042872,18044452..18044566,18045077..18045138, 18045248..18045295,18046026..18046310,18046398..18046457, 18046566..18046649,18046758..18046823,18046923..18047021, 18047103..18047321,18047646..18047750) /locus_tag="TCM_028772" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Golgin candidate 5 isoform 2" /protein_id="EOY26817.1" /db_xref="Phytozome:GSVIVT01038690001" /db_xref="TAIR:AT1G79830.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVL7" /translation="EKEEAETDRSLHSPDQTTAEEDKSAVQVEKDDEHSEVVESSDNV FPDPGKTEPESEPVSVQPSESTFQNVESSDSPDNEQQKESSGLVPSESADSKEAKLEA AEIDQVEDAMAVPAESSNVVDMHESTDEQKPQTEDALEKGSPVKSEESRDSQASAGGG PDELEFLRSHSITVEETKSAHEFLLPSVVPSDEAQGMVSESVFFENDANTKRVEVDQR TNDSETDAKEEQCLSSATTMSDSADSMHELEKVKMEMKMMESALQGAARQAQAKADEI AKLMNENEQLKVVIEDLKRKSNEAEIESLREEYHQRVATLERKVYALTKERDTLRREQ NKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKKGLTTK LQVEENKVESIKKDKTATEKLLQETIEKHQAELAGQKEFYTNALNAAKEAEALAEARA NSEARTELESRLREAEEREAMLVQTLEELRQTLSRKEQQAVFREDMLRRDVEDLQKRY QASERRCEELITQVPESTRPLLRQIEAMQETTSRRAEAWAAVERSLNSRLQEAEAKAA AAEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLSKSIEKERQRAAENRQEYLAA KEEADTQEGRANQLEEEIRELRRKHKQELHDALVHRELLQQFTEGSFWFVTGSGKGES CSVRLGKDSAGTFCGCV" CDS join(18040484..18040960,18041570..18041641, 18042798..18042872,18044452..18044566,18045077..18045138, 18045248..18045295,18046026..18046310,18046398..18046457, 18046566..18046649,18046758..18046823,18046923..18047021, 18047103..18047321,18047677..18047791,18047863..18048083, 18048227..18048315,18048401..18048413) /locus_tag="TCM_028772" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Golgin candidate 5 isoform 3" /protein_id="EOY26818.1" /db_xref="Phytozome:GSVIVT01038690001" /db_xref="TAIR:AT1G79830.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVL7" /translation="MAVPAESSNVVDMHESTDEQKPQTEDALEKGSPVKSEESRDSQA SAGGGPDELEFLRSHSITVEETKSAHEFLLPSVVPSDEAQGMVSESVFFENDANTKRV EVDQRTNDSETDAKEEQCLSSATTMSDSADSMHELEKVKMEMKMMESALQGAARQAQA KADEIAKLMNENEQLKVVIEDLKRKSNEAEIESLREEYHQRVATLERKVYALTKERDT LRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIRELEEEKK GLTTKLQVEENKVESIKKDKTATEKLLQETIEKHQAELAGQKEFYTNALNAAKEAEAL AEARANSEARTELESRLREAEEREAMLVQTLEELRQTLSRKEQQAVFREDMLRRDVED LQKRYQASERRCEELITQVPESTRPLLRQIEAMQETTSRRAEAWAAVERSLNSRLQEA EAKAAAAEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLSKSIEKERQRAAENRQ EYLAAKEEADTQEGRANQLEEEIRELRRKHKQELHDALVHRELLQQEVEREKAARLDL ERTARVHSVAVSEQASISRHNSALENGSLSRKLSTASSMGSMEESYFLQASLDSSDGF AEKRNIGEATLSPLYMKSMTPSAFESALRQKEGELASYMSRLTSMESIRDSLAEELVK MTEQVSFPSAAELNAKS" mobile_element 18049948..18049996 /note="source:scaffold_8_CACTA_0858 14046 14094" /mobile_element_type="transposon:TIR/CACTA" gene 18051320..18058097 /locus_tag="TCM_028773" /note="dbxref CacaoGD:Thecc1EG028773" mRNA join(18051320..18051889,18052482..18052626, 18053117..18053228,18053315..18053382,18053459..18053591, 18054006..18054105,18054216..18054328,18054581..18054674, 18055423..18055576,18055670..18055813,18055897..18055970, 18056054..18056142,18056517..18056631,18057109..18057293, 18057569..18058097) /locus_tag="TCM_028773" /product="Major facilitator superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT1G79820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037849t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s18590.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4081t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4081t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16010t1" mRNA join(18051321..18051889,18051997..18052058, 18052482..18052626,18053117..18053228,18053315..18053382, 18053459..18053591,18054006..18054105,18054216..18054328, 18054581..18054674,18055423..18055576,18055670..18055813, 18055897..18055970,18056054..18056142,18056517..18056631, 18057109..18057293,18057569..18057950) /locus_tag="TCM_028773" /product="Major facilitator superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G79820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037849t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s18590.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16010t1" mRNA join(18051860..18051889,18052482..18052626, 18053117..18053228,18053315..18053382,18053459..18053591, 18054006..18054105,18054216..18054328,18054581..18054674, 18055423..18055576,18055670..18055763,18057108..18057293, 18057569..18057885) /locus_tag="TCM_028773" /product="Major facilitator superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT1G79820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037849t5" /inference="similar to AA sequence:Phytozome:POPTR_0001s18590.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc685t7_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4081t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16010t1" CDS join(18051868..18051889,18051997..18052058, 18052482..18052626,18053117..18053228,18053315..18053382, 18053459..18053591,18054006..18054105,18054216..18054328, 18054581..18054674,18055423..18055576,18055670..18055813, 18055897..18055970,18056054..18056142,18056517..18056631, 18057109..18057291) /locus_tag="TCM_028773" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037849t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 1" /protein_id="EOY26819.1" /db_xref="Phytozome:POPTR_0001s18590.1" /db_xref="TAIR:AT1G79820.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2V4B9" /translation="MLSFLITVFFFFFALNLFFLSSSLKPKMLTAESFVFSSGDGAYN NMAMRGRHLDAYSMYKRGSKDYINAHDKEQGSARLLNGAGKDIGNPSWNRSLPHILVA TLSSLLFGYHLGVVNETLESMSHDLGFHGNTMAEGLVVSTCLGGAFVGSLFSGSIADG VGRRRAFQLCALPMIIGSSMSATAKNLWGMLLGRLFVGSGMGIGPPVAALYVTEVSPA YVRGTYGSCTQIATCLGLMGALFIGLPAKETEGWWRICFWVSAVPAAMLALFMEFSAE SPQWLFKRGRGADAEAEFEKLLGGPYVKGAMAELSKSDRGDEADTVRFSELLYGRHRK VIFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSESANICVGIANLIGSFVALLLMD KLGRKLLLIGSFSGMAVAMGLQATSASSLVSSSNEVYMSVGGMLLFVLTFAMGAGPVP GLLLSEMFPGRIRAKAMSICMAVHWVINFFVGLLFLRLLEQIGPLVLNTIFGTFCLLA VIFVKKNVLETKGKSLQEIEIAFLPPE" CDS join(18052533..18052626,18053117..18053228, 18053315..18053382,18053459..18053591,18054006..18054105, 18054216..18054328,18054581..18054674,18055423..18055576, 18055670..18055813,18055897..18055970,18056054..18056142, 18056517..18056631,18057109..18057291) /locus_tag="TCM_028773" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037849t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 2" /protein_id="EOY26820.1" /db_xref="Phytozome:POPTR_0001s18590.1" /db_xref="TAIR:AT1G79820.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2V4B9" /translation="MAMRGRHLDAYSMYKRGSKDYINAHDKEQGSARLLNGAGKDIGN PSWNRSLPHILVATLSSLLFGYHLGVVNETLESMSHDLGFHGNTMAEGLVVSTCLGGA FVGSLFSGSIADGVGRRRAFQLCALPMIIGSSMSATAKNLWGMLLGRLFVGSGMGIGP PVAALYVTEVSPAYVRGTYGSCTQIATCLGLMGALFIGLPAKETEGWWRICFWVSAVP AAMLALFMEFSAESPQWLFKRGRGADAEAEFEKLLGGPYVKGAMAELSKSDRGDEADT VRFSELLYGRHRKVIFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSESANICVGIA NLIGSFVALLLMDKLGRKLLLIGSFSGMAVAMGLQATSASSLVSSSNEVYMSVGGMLL FVLTFAMGAGPVPGLLLSEMFPGRIRAKAMSICMAVHWVINFFVGLLFLRLLEQIGPL VLNTIFGTFCLLAVIFVKKNVLETKGKSLQEIEIAFLPPE" CDS join(18052533..18052626,18053117..18053228, 18053315..18053382,18053459..18053591,18054006..18054105, 18054216..18054328,18054581..18054674,18055423..18055576, 18055670..18055763,18057108..18057291) /locus_tag="TCM_028773" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG037849t5" /codon_start=1 /product="Major facilitator superfamily protein isoform 3" /protein_id="EOY26821.1" /db_xref="Phytozome:POPTR_0001s18590.1" /db_xref="TAIR:AT1G79820.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2V4B9" /translation="MAMRGRHLDAYSMYKRGSKDYINAHDKEQGSARLLNGAGKDIGN PSWNRSLPHILVATLSSLLFGYHLGVVNETLESMSHDLGFHGNTMAEGLVVSTCLGGA FVGSLFSGSIADGVGRRRAFQLCALPMIIGSSMSATAKNLWGMLLGRLFVGSGMGIGP PVAALYVTEVSPAYVRGTYGSCTQIATCLGLMGALFIGLPAKETEGWWRICFWVSAVP AAMLALFMEFSAESPQWLFKRGRGADAEAEFEKLLGGPYVKGAMAELSKSDRGDEADT VRFSELLYGRHRKVIFIGSTLFALQQLSGINAVFYFSSTVFKNAGVINFFVGLLFLRL LEQIGPLVLNTIFGTFCLLAVIFVKKNVLETKGKSLQEIEIAFLPPE" mobile_element complement(18052794..18052832) /note="source:CACAO_M_S_E145942_F369_scaffold_11 1881 1919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18058528..18058706 /note="source:CACAO_Mariner_E220_scaffold_9 11575 11768" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 18058656..18058751 /note="source:CACAO_PIF_E54_scaffold_3 7607 7716" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 18059162..18059343 /note="source:scaffold_5_CACTA_0614 115 305" /mobile_element_type="transposon:TIR/CACTA" gene 18059570..18061419 /locus_tag="TCM_028774" /note="dbxref CacaoGD:Thecc1EG028774" mRNA join(18059570..18059632,18060124..18060313, 18060967..18061098,18061192..18061419) /locus_tag="TCM_028774" /product="Cytochrome c biogenesis protein family" /inference="alignment:exonerate- protein:2:ricco:30146.m003557" /inference="similar to AA sequence:ricco:30146.m003557" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g10939t00001" CDS join(18060170..18060313,18060967..18061098, 18061192..18061395) /locus_tag="TCM_028774" /note="dbxref ricco:30146.m003557" /codon_start=1 /product="Cytochrome c biogenesis protein family" /protein_id="EOY26822.1" /db_xref="TAIR:AT1G15220.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXC0" /translation="MENKDGEVKKAQVVEARARNISHNVRCTECGSQSIEDSQADIAI LLRKLIRDEIRSGKSDKEIYKKLEEDYGETVLYAPKFDLQTAALWLSPLLVAGAAAGI WAYNKHRQNTNVHIMALNLVRGVPLTPKEKETMLDLLTPPPPQGVTPSSLWSRWRGQ" gene 18061482..18072005 /locus_tag="TCM_028775" /note="dbxref CacaoGD:Thecc1EG028775" mRNA join(18061482..18061511,18063989..18064483, 18064769..18064941,18065028..18065204,18065745..18065916, 18066041..18066129,18066589..18066658,18066819..18066871, 18067097..18067204,18067688..18067786,18067977..18068069, 18068194..18068271,18068937..18069038,18069434..18069524, 18070641..18070714,18070885..18071061,18071482..18071535, 18071648..18072005) /locus_tag="TCM_028775" /product="Long-chain-fatty-acid-CoA ligase-like protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30146.m003560" /inference="similar to AA sequence:ricco:30146.m003560" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc116t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4091t4" mobile_element complement(18062534..18062854) /note="source:scaffold_4_CACTA_0511 3095 3374" /mobile_element_type="transposon:TIR/CACTA" mRNA join(18062643..18062931,18063883..18064483, 18064769..18064932,18065028..18065204,18065745..18065916, 18066041..18066129,18066589..18066625,18066864..18066871, 18067097..18067204,18067688..18067786,18067977..18068069, 18068194..18068271,18068937..18069038,18069434..18069524, 18070641..18070714,18070885..18071061,18071482..18071535, 18071648..18071899) /locus_tag="TCM_028775" /product="Long-chain-fatty-acid-CoA ligase-like protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30146.m003560" /inference="similar to AA sequence:ricco:30146.m003560" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4091t4" mobile_element complement(18063180..18063244) /note="source:CACAO_on_E362_scaffold_1 4170 4234" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 18063393..18063500 /note="source:scaffold_4_CACTA_0482 7631 7738" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18063615..18063717 /note="source:scaffold_3_CACTA_0377 5911 6017" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18063629..18063739) /note="source:CACAO_on_E329_A_scaffold_147 4304 4419" /mobile_element_type="transposon:TIR/PIF-Harbinger" mRNA join(18063953..18064483,18064769..18064932, 18065028..18065204,18065745..18065916,18066041..18066129, 18066589..18066658,18066819..18066871,18067097..18067204, 18067688..18067786,18067977..18068069,18068194..18068271, 18068937..18069038,18069434..18069524,18070641..18070714, 18070885..18071061,18071482..18071535,18071648..18071940) /locus_tag="TCM_028775" /product="Long-chain-fatty-acid-CoA ligase-like protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30146.m003560" /inference="similar to AA sequence:ricco:30146.m003560" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4091t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4091t4" CDS join(18064300..18064483,18064769..18064941, 18065028..18065204,18065745..18065916,18066041..18066129, 18066589..18066658,18066819..18066871,18067097..18067204, 18067688..18067786,18067977..18068069,18068194..18068271, 18068937..18069038,18069434..18069524,18070641..18070714, 18070885..18071061,18071482..18071535,18071648..18071692) /locus_tag="TCM_028775" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30146.m003560" /codon_start=1 /product="Long-chain-fatty-acid-CoA ligase-like protein isoform 2" /protein_id="EOY26824.1" /db_xref="TAIR:AT3G16170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LW70" /translation="MRGSIISSFKALNYNSLILLPRPCLFNRHRFLFNNNNYYYYLYP FVRPPFASASFSSSSHCSGSESGSFMEVVKAACRRGSSAADRIAIRADQNSYTYTQLV SSAFNISRLLSSSNVKTNDGVSSGHGNLGGARIGIVAKPSAEFVAGMLGTWFSGGVAV PLALSYPEAELLHVMNDSDISFVLSTEEYRETMQSVAARSAAQFSLIPPVPSISSSPN FTDQIQIGEIEAEGSLIGENPALVVYTSGTTGKPKGVVHTHKSITAQVQMLTEAWEYT SSDQFLHCLPLHHVHGLFNALLAPLYAGSTVEFMPKFSVRGIWQRWRESYTINGSKAD DSITVFTGVPTMYTRLIQGYHAMDPEQQAVSASAARQLRLMMCGSSALPQPVMQEWET ITGHLLLERYGMTEFVMAISNPLRGARKAGTVGKPFPGVQVRIAEDKSGGDMMGVGEL CVKSPSLFKEYWKLPQVTKESFTDDGFFKTGDAGRVDEDGYYIILGRTSADIMKVGGY KLSALEIESVLLEHPDIAECCVLGLPDKDYGEAVSAIVVLESERKGKQEDSNSALSLE ELCTWAKDKLAPYKLPTRLMLWDSLPRNAMGKVNKKELKRQLGGEK" CDS join(18064300..18064483,18064769..18064932, 18065028..18065204,18065745..18065916,18066041..18066129, 18066589..18066658,18066819..18066871,18067097..18067204, 18067688..18067786,18067977..18068069,18068194..18068271, 18068937..18069038,18069434..18069524,18070641..18070714, 18070885..18071061,18071482..18071535,18071648..18071692) /locus_tag="TCM_028775" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30146.m003560" /codon_start=1 /product="Long-chain-fatty-acid-CoA ligase-like protein isoform 3" /protein_id="EOY26825.1" /db_xref="TAIR:AT3G16170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LW70" /translation="MRGSIISSFKALNYNSLILLPRPCLFNRHRFLFNNNNYYYYLYP FVRPPFASASFSSSSHCSGSESGSFMEVVKAACRRGSSAADRIAIRADQNSYTYTQLV SSAFNISRLLSSSNNDGVSSGHGNLGGARIGIVAKPSAEFVAGMLGTWFSGGVAVPLA LSYPEAELLHVMNDSDISFVLSTEEYRETMQSVAARSAAQFSLIPPVPSISSSPNFTD QIQIGEIEAEGSLIGENPALVVYTSGTTGKPKGVVHTHKSITAQVQMLTEAWEYTSSD QFLHCLPLHHVHGLFNALLAPLYAGSTVEFMPKFSVRGIWQRWRESYTINGSKADDSI TVFTGVPTMYTRLIQGYHAMDPEQQAVSASAARQLRLMMCGSSALPQPVMQEWETITG HLLLERYGMTEFVMAISNPLRGARKAGTVGKPFPGVQVRIAEDKSGGDMMGVGELCVK SPSLFKEYWKLPQVTKESFTDDGFFKTGDAGRVDEDGYYIILGRTSADIMKVGGYKLS ALEIESVLLEHPDIAECCVLGLPDKDYGEAVSAIVVLESERKGKQEDSNSALSLEELC TWAKDKLAPYKLPTRLMLWDSLPRNAMGKVNKKELKRQLGGEK" CDS join(18064300..18064483,18064769..18064932, 18065028..18065204,18065745..18065916,18066041..18066129, 18066589..18066625,18066864..18066871,18067097..18067204, 18067688..18067786,18067977..18068069,18068194..18068271, 18068937..18069038,18069434..18069524,18070641..18070714, 18070885..18071061,18071482..18071535,18071648..18071692) /locus_tag="TCM_028775" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30146.m003560" /codon_start=1 /product="Long-chain-fatty-acid-CoA ligase-like protein isoform 1" /protein_id="EOY26823.1" /db_xref="TAIR:AT3G16170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LW70" /translation="MRGSIISSFKALNYNSLILLPRPCLFNRHRFLFNNNNYYYYLYP FVRPPFASASFSSSSHCSGSESGSFMEVVKAACRRGSSAADRIAIRADQNSYTYTQLV SSAFNISRLLSSSNNDGVSSGHGNLGGARIGIVAKPSAEFVAGMLGTWFSGGVAVPLA LSYPEAELLHVMNDSDISFVLSTEEYRETMQSVAARSAAQFSLIPPVPSISSSPNFTD QIQIGEIEAEGSLIGENPALVVYTSGTTGKPKGVVHTHKSITAQVQMLTEAWEYTSSS TVEFMPKFSVRGIWQRWRESYTINGSKADDSITVFTGVPTMYTRLIQGYHAMDPEQQA VSASAARQLRLMMCGSSALPQPVMQEWETITGHLLLERYGMTEFVMAISNPLRGARKA GTVGKPFPGVQVRIAEDKSGGDMMGVGELCVKSPSLFKEYWKLPQVTKESFTDDGFFK TGDAGRVDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPDIAECCVLGLPDKD YGEAVSAIVVLESERKGKQEDSNSALSLEELCTWAKDKLAPYKLPTRLMLWDSLPRNA MGKVNKKELKRQLGGEK" mobile_element complement(18073718..18074858) /note="source:INTACT639F_F363_scaffold_5-int 7466 8572" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18074775..18074874 /note="source:CACAO_PIF_E62_scaffold_2 8187 8280" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 18075565..18076653 /locus_tag="TCM_028776" /note="dbxref CacaoGD:Thecc1EG028776" mRNA join(18075565..18075744,18076009..18076149, 18076291..18076653) /locus_tag="TCM_028776" /product="Thioesterase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g000890.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028791t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017055001" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc2751t1" CDS join(18075577..18075744,18076009..18076149, 18076291..18076446) /locus_tag="TCM_028776" /note="paralog of Thecc1EG028791t1" /codon_start=1 /product="Thioesterase superfamily protein, putative" /protein_id="EOY26826.1" /db_xref="Phytozome:GSVIVT01017055001" /db_xref="TAIR:AT3G16175.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U0G7" /translation="MEESFVQVQRSVKWLEDITTGAIGFELESRTLQGLRVIRAQRGF LRCSFTVPSDASDANGNWHVGAIATIIDNVGGAAIYSTADRVKVTLDFNISYYSAART QEQVEIEAKVIGNKGKLTSVVVEVRKKDNGELIAIGKQWTASNAYRSPQSKL" mobile_element complement(18077027..18077604) /note="source:scaffold_1_CACTA_0009 2222 3182" /mobile_element_type="transposon:TIR/CACTA" gene 18077738..18078540 /locus_tag="TCM_028777" /note="dbxref CacaoGD:Thecc1EG028777" mRNA join(18077738..18077824,18078267..18078540) /locus_tag="TCM_028777" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" CDS join(18077781..18077824,18078267..18078423) /locus_tag="TCM_028777" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26827.1" /translation="MVDESIVQIQRSLRRNWQVGDIATLIDNVGGAAMYSTIDRLKVT FDFNISYYSTARIRFFFKYFIV" gene 18083055..18084219 /locus_tag="TCM_028778" /note="dbxref CacaoGD:Thecc1EG028778" mRNA join(18083055..18083299,18083402..18083542, 18083627..18083770,18084103..18084219) /locus_tag="TCM_028778" /product="Thioesterase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05040.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028776t1" /inference="similar to AA sequence:ricco:30146.m003561" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01747t00001" CDS join(18083135..18083299,18083402..18083542, 18083627..18083770,18084103..18084120) /locus_tag="TCM_028778" /note="dbxref ricco:30146.m003561; paralog of Thecc1EG028776t1" /codon_start=1 /product="Thioesterase superfamily protein, putative" /protein_id="EOY26828.1" /db_xref="TAIR:AT3G16175.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U0G7" /translation="MQEDNSLEKSLAWLQDVVQGAIGQELETRALDGLRITHAQKGFI RCNFVVSNRASGVDGNWHVGAIATLMDVVGAVAVYSVAHRVITSVDFSISYYSTAKIH EQVEVDAKVMANKGRLTQVMVEVRRKGNGELIASGKQWMASNNLRVSQVEHSI" gene complement(18083989..18090213) /locus_tag="TCM_028779" /note="dbxref CacaoGD:Thecc1EG028779" mRNA complement(join(18083989..18085650,18085792..18086009, 18086153..18086378,18090139..18090213)) /locus_tag="TCM_028779" /product="Major facilitator superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30146.m003553" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028817t1" /inference="similar to AA sequence:ricco:30146.m003553" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g3988t1" CDS complement(join(18084253..18085650,18085792..18086009, 18086153..18086243)) /locus_tag="TCM_028779" /note="dbxref ricco:30146.m003553; paralog of Thecc1EG028817t1" /codon_start=1 /product="Major facilitator superfamily protein, putative" /protein_id="EOY26829.1" /db_xref="TAIR:AT1G52190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M817" /translation="MASEKIMEKGIRQDSSERRKGGFIALPFIIANEALEKVPSYALV PSMTLYLKSNYHLTIAAVHNLINHWQAFSNFAPILGAFFADSFMGRFVTIGLGSISSF LGVAILWLTTVIPQATPPPCDHLAQSCKSATAGQVAILVAALFFKSIGAGGIRPCSMP FGADQLSNKNEKILESYFSWYYAAASLGGSLGLTSVIYILQMYGWMVGYGVCAILMFL ATVAFYIASPLYVKRKASTSLFTGFAQVLVVAYKNRNLPFPSKDSGYHHGKDSEITVP SEKLKFLNKACIIRNAEQEIGSDGLALDPWRVSTVWKVEELKALLKVIPIWSTGIVMA IAGSQHSFPVLQASSVNRHVLGGFEIPAASVTVFVYCTVVVWVVLYERVIIPLASKIK GEQVYISVQLRMGIGLFLSVIALGLTAIVESARRRKAIQEGLLKNPIAVVNMSVIWLL PQHIVMGVAEAFSTLGYFEFYHREFPKTMSSIGNSLFFLALAFAHILSSALFNIVNKT TSRGGKPSWVADNLNEARFDNYYWLLAGLSLVNLLYYIICSRSYGSTAEVIDEGYESE EE" mobile_element 18089160..18090600 /note="source:INTACT193_F12_scaffold_1-int 6584 8016" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18090985..18093683 /note="source:CACAO_M_S_E5046_F335_scaffold_1 18249 20864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18093596..18093693) /note="source:INTACT595F_F13_scaffold_4-int 2434 2531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18096828..18106976 /note="source:INTACT264_F12_scaffold_6-int 1 10149" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18111930..18113471 /locus_tag="TCM_028782" /note="dbxref CacaoGD:Thecc1EG028782" mRNA join(18111930..18112283,18112827..18113471) /locus_tag="TCM_028782" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031097t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.50 coverage" CDS 18112836..18113171 /locus_tag="TCM_028782" /note="paralog of Thecc1EG031097t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26830.1" /translation="MKLGRDTTICLEDILTMGLPKWLLVQTFYSGLFGSIRTTIDVAA CRTLMGKSIDEAYDLLEEMTFSIYQWPFERLVLRKVASVHELDSIIALTAQVAGLSKK FDILGVHSI" mobile_element 18120581..18123205 /note="source:CACAO_M_E619_F15_scaffold_1 6518 9143" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18122594..18140298 /locus_tag="TCM_028784" /note="dbxref CacaoGD:Thecc1EG028784" mRNA join(18122594..18122715,18125334..18125781, 18125914..18126226,18126668..18126792,18127352..18127517, 18127610..18127784,18131758..18131867,18135075..18135222, 18140155..18140298) /locus_tag="TCM_028784" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:Glyma14g01400.1" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete" mobile_element 18124698..18125454 /note="source:CACAO_M_E52071_F15_scaffold_7 2341 3095" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(18125560..18125781,18125914..18126226, 18126668..18126792,18127352..18127517,18127610..18127784, 18131758) /locus_tag="TCM_028784" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26831.1" /db_xref="Phytozome:Glyma14g01400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BSN7" /translation="MAQLANTSNNWALGTSPSDIETNQRREENEHCKAITLKNGKKVE RSSMQSNSLSKLVQKETMSEKKDEKVQEEKMPSYVKFLKHIMTKKRRLGEFETIALIK KCSVIIQNKLPLKLKDLGSFTISCIISTLFFAKALSDLRASINFMLLSIYRKLGLREI KPTSVTLQLTVQSFTYPRATKPFIEEPPKLELKPLQTHLWYAFLGNSSTLLVIISFSL TNRIAFGFCNALATFQRCIIAIFTDMVEQCLELFMDDFSVFENSFDDCLHNLVEFLKG IEMDKVKAEMINKLPPPTLVKGIWSFLNHVGFYRHFIKDFSRISKPLCNLLKNDTPF" mobile_element complement(18127793..18129869) /note="source:CACAO_M_S_E66657_F76_scaffold_5 4944 6119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18129870..18132467 /note="source:CACAO_M_S_E84461_F259_scaffold_6 1 2551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18133869..18134042) /note="source:CACAO_M_S_E4911_F76_scaffold_1 131 297" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18134659..18135883 /note="source:CACAO_M_S_E122077_F328_scaffold_10 113 1338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18135854..18138729) /note="source:CACAO_M_E86216_F281_scaffold_13 1 2951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18138730..18138921 /note="source:CACAO_M_E44899_F328_scaffold_6 11186 11377" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18139757..18139834) /note="source:INTACT216_F33_scaffold_5-int 2866 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18139796..18140299 /note="source:scaffold_4_CACTA_0503 3215 3721" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18141736..18141989) /note="source:INTACT283_F50_scaffold_9-int 7902 8156" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18142090..18142450 /note="source:scaffold_4_CACTA_0503 770 1130" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18142154..18143255 /note="source:CACAO_M_E14081_F316_scaffold_3 10559 11675" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18145139..18145500 /note="source:CACAO_M_E44265_F33_scaffold_5 1496 1865" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18145827..18147252) /note="source:INTACT670_F33_scaffold_3-int 6021 7446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18147353..18147564 /note="source:CACAO_M_E44265_F33_scaffold_5 3596 3807" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18152178..18152946 /note="source:CACAO_M_E53009_F42_scaffold_8 4878 5646" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18153047..18153490) /note="source:CACAO_M_E44762_F33_scaffold_6 1 439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18154341..18154573 /note="source:CACAO_M_E12081_F82_scaffold_2 2921 3152" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18174459..18176250) /note="source:CACAO_M_E57059_F42_scaffold_8 2777 4562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18178387..18178893) /note="source:CACAO_M_S_E32427_F42_scaffold_3 1 510" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18178895..18178947 /note="source:CACAO_M_E619_F15_scaffold_1 1781 1833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18178957..18179772) /note="source:CACAO_M_E14081_F316_scaffold_3 4724 5510" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18180648..18180734 /note="source:CACAO_M_S_E5860_F197_scaffold_2 11030 11115" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18180894..18181657 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17251 17972" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18181841..18181913) /note="source:CACAO_M_S_E122136_F76_scaffold_10 554 618" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18181942..18182917) /note="source:CACAO_M_E69236_F12_scaffold_9 3470 4441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18183023..18186322) /note="source:CACAO_M_E59482_F82_scaffold_9 1 3323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18186179..18186196) /note="source:CACAO_M_S_E5285_F300_scaffold_1 13560 13732" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18186197..18186345) /note="source:CACAO_on_SS_E90_scaffold_6 3559 3707" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(18186345..18186986) /note="source:CACAO_M_E294_F134_scaffold_1 9445 10083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18187841..18188362 /note="source:INTACT135_F42_scaffold_4-int 5812 6334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18188360..18192332 /note="source:CACAO_M_E3859_F82_scaffold_1 3152 7136" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18192569..18193642) /note="source:CACAO_M_E35106_F82_scaffold_5 1737 2809" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18196333..18196791) /note="source:CACAO_M_E49108_F15_scaffold_6 1 459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18196792..18198461) /note="source:CACAO_M_E59482_F82_scaffold_9 1 1693" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18200613..18210726 /locus_tag="TCM_028791" /note="dbxref CacaoGD:Thecc1EG028791" mRNA join(18200613..18200775,18201433..18201597, 18201687..18201827,18201912..18202320,18210538..18210726) /locus_tag="TCM_028791" /product="Thioesterase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s05040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028776t1" /inference="similar to AA sequence:ricco:30146.m003561" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc986t1_C2" CDS join(18200620..18200775,18201433..18201597, 18201687..18201827,18201912..18202076) /locus_tag="TCM_028791" /note="dbxref ricco:30146.m003561; paralog of Thecc1EG028776t1" /codon_start=1 /product="Thioesterase superfamily protein, putative" /protein_id="EOY26832.1" /db_xref="TAIR:AT3G16175.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U0G7" /translation="MICNPSYFDYLITIAHRGSAKADTRALRGFDQHSGRRMFVEASW RLSLAQWGKIEDGSRQKSLKWLVDLSKGTISHELEALTLEGLQILQGQKGFIRCNFVV PSRASDADGNWRVGAMATLIDDVGAAAIYSIADHVKASLDFNISFYSTAKIQEEVEIE AKVTGDKEKLAHVVVEVRRKENRELIALGKQWMASSKNTAKAAQGSKL" mobile_element complement(18200822..18200917) /note="source:CACAO_M_S_E122136_F76_scaffold_10 455 548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18202474..18202679) /note="source:INTACT622_F276_scaffold_7-int 389 594" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18202681..18206009 /note="source:CACAO_M_E49106_F85_scaffold_6 1 3329" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18206010..18206698) /note="source:INTACT622_F276_scaffold_7-int 6691 7252" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18206662..18206796) /note="source:INTACT774_F328_scaffold_5-int 3075 3191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18206797..18209889 /note="source:CACAO_M_E49108_F15_scaffold_6 1 3093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18209889..18210011 /note="source:CACAO_Again_on_E14_scaffold_1 931 1066" /mobile_element_type="transposon:TIR/hAT" mobile_element 18209890..18209930 /note="source:scaffold_9_CACTA_0931 13096 13133" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18210012..18213230 /note="source:INTACT135_F42_scaffold_4-int 1 3228" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18210409..18213862) /note="source:INTACT774_F328_scaffold_5-int 6646 10155" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18213863..18217987 /note="source:CACAO_M_E45364_F328_scaffold_6 1 7885" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18220331..18222086 /note="source:INTACT135_F42_scaffold_4-int 10136 11904" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18222083..18224589 /note="source:CACAO_M_E49857_F85_scaffold_7 15438 17904" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18224561..18225358) /note="source:INTACT622_F276_scaffold_7-int 4884 5786" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18225359..18228452 /note="source:CACAO_M_E49110_F15_scaffold_6 1 3094" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18228453..18229556) /note="source:INTACT622_F276_scaffold_7-int 3785 4888" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18229557..18232892 /note="source:CACAO_M_E49112_F85_scaffold_6 1 3336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18232809..18232906) /note="source:CACAO_M_S_E5285_F300_scaffold_1 6622 6718" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18232888..18236664) /note="source:INTACT622_F276_scaffold_7-int 22 3794" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18236665..18238488) /note="source:CACAO_M_E49195_F17_scaffold_6 13219 15012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18239018..18239439 /note="source:INTACT132_F12_scaffold_9-int 1 425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18239439..18242392) /note="source:CACAO_M_E69760_F9_scaffold_9 6706 9648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18242389..18243049 /note="source:INTACT132_F12_scaffold_9-int 417 1076" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18243049..18245027) /note="source:CACAO_M_E49195_F17_scaffold_6 3397 5399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18245319..18246140) /note="source:CACAO_M_E49195_F17_scaffold_6 2415 3223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18246141..18246552) /note="source:INTACT584_F15_scaffold_3-int 10878 11289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18246653..18246974 /note="source:CACAO_M_E49857_F85_scaffold_7 15371 15692" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18246971..18247101 /note="source:CACAO_M_S_E6875_F7_scaffold_2 3229 3359" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18254543..18254929 /note="source:CACAO_M_E12297_F14_scaffold_3 9668 10053" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18255879..18256507 /note="source:CACAO_M_E12297_F14_scaffold_3 11003 11630" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18259739..18262108) /note="source:CACAO_M_E33422_F33_scaffold_4 1 2370" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18262109..18265096) /note="source:CACAO_M_E14957_F86_scaffold_3 979 3987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18265081..18265217 /note="source:CACAO_M_E59600_F12_scaffold_9 1320 1453" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18265095..18265776) /note="source:CACAO_M_E22348_F13_scaffold_3 7396 8076" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18266676..18266902) /note="source:CACAO_M_E23144_F272_scaffold_4 9626 9852" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18268452..18269165) /note="source:CACAO_M_E49857_F85_scaffold_7 20088 20801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18271654..18271942) /note="source:CACAO_M_E49857_F85_scaffold_7 3415 3717" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18295303..18296240) /note="source:INTACT135F_F90_scaffold_2-int 5634 6565" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18299227..18308019 /note="source:CACAO_M_E49126_F13_scaffold_6 1 8793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18308409..18310569 /note="source:CACAO_Mutator_E1149_scaffold_5 10585 12752" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18310545..18313444 /note="source:CACAO_Mutator_E1998_scaffold_9 7119 10206" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18313292..18313745 /note="source:scaffold_1_CACTA_0009 13310 13824" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18316407..18317612 /note="source:CACAO_M_E22186_F143_scaffold_3 1 1205" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18317609..18318108 /note="source:CACAO_M_S_E100312_F82_scaffold_9 3913 4412" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18318680..18319528 /note="source:scaffold_5_CACTA_0611 1175 2011" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18318681..18322849) /note="source:CACAO_M_E10145_F15_scaffold_2 1 3105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18322850..18323461 /note="source:scaffold_5_CACTA_0611 5321 5941" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18323562..18325153 /note="source:CACAO_M_E22186_F143_scaffold_3 1323 2905" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18325154..18326349 /note="source:CACAO_M_E50361_F82_scaffold_7 1 1195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18326452..18328578 /note="source:CACAO_M_E2982_F85_scaffold_1 1209 3335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18328577..18328668 /note="source:CACAO_M_E22186_F143_scaffold_3 2899 2981" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18328579..18328636) /note="source:CACAO_M_S_E64023_F13_scaffold_5 5809 5862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18329841..18330128) /note="source:CACAO_on_E193_scaffold_6 567 854" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18330091..18331608 /note="source:CACAO_M_S_E122136_F76_scaffold_10 1289 2808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18331609..18331941) /note="source:CACAO_M_E53587_F207_scaffold_8 19992 20325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18332861..18332906) /note="source:CACAO_M_S_E122138_F207_scaffold_10 7186 7231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18332879..18334801 /note="source:CACAO_M_E33778_F134_scaffold_4 1024 2960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18335449..18335614) /note="source:INTACT277_F12_scaffold_9-int 13868 14018" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18335471..18335598 /note="source:CACAO_M_E44286_F33_scaffold_6 1 128" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18335599..18336041) /note="source:CACAO_M_E44874_F85_scaffold_6 2893 3332" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18338597..18338877) /note="source:CACAO_M_E69001_F82_scaffold_9 1 281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18338878..18339873 /note="source:CACAO_M_E12901_F33_scaffold_3 124 1117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18339873..18340842 /note="source:CACAO_M_S_E122136_F76_scaffold_10 1326 2267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18340959..18342897 /note="source:CACAO_M_S_E122136_F76_scaffold_10 2341 4277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18342896..18343282 /note="source:CACAO_M_E12901_F33_scaffold_3 1111 1497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18343283..18343734 /note="source:CACAO_M_E65145_F15_scaffold_9 1 453" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18344639..18345496 /note="source:CACAO_M_E3891_F15_scaffold_1 1356 2215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18346215..18346389) /note="source:CACAO_M_S_E101707_F15_scaffold_9 13288 13462" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18346376..18346997 /note="source:CACAO_M_S_E4522_F33_scaffold_1 1485 2107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18347429..18348254 /note="source:CACAO_M_E53388_F15_scaffold_8 3277 4101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18348835..18349351 /note="source:CACAO_M_E53388_F15_scaffold_8 4683 5200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18349452..18349809 /note="source:CACAO_M_E53388_F15_scaffold_8 5225 5585" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18349911..18350689 /note="source:CACAO_M_E53388_F15_scaffold_8 5599 6375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18350681..18351545) /note="source:CACAO_M_S_E83672_F33_scaffold_6 1 865" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18353250..18356203 /note="source:CACAO_M_E49143_F273_scaffold_6 1 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18356858..18359524 /note="source:CACAO_M_E49145_F369_scaffold_6 1 2667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18361787..18364718 /note="source:CACAO_M_S_E120308_F33_scaffold_10 2 2939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18366399..18368208 /note="source:INTACT126_F14_scaffold_3-int 3153 4985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18366401..18368811) /note="source:CACAO_M_E43744_F324_scaffold_5 5358 7769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18368796..18373820) /note="source:CACAO_M_E43744_F324_scaffold_5 1197 7778" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18370958..18393858 /locus_tag="TCM_028804" /note="dbxref CacaoGD:Thecc1EG028804" mRNA join(18370958..18371100,18391777..18391994, 18392127..18392532,18393837..18393858) /locus_tag="TCM_028804" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028810t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage" mobile_element 18373822..18374275 /note="source:CACAO_M_E33282_F13_scaffold_4 1 438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18374256..18375056 /note="source:INTACT585_F12_scaffold_8-int 2084 2883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18376826..18377549 /note="source:INTACT1332F_F13_scaffold_8-int 13088 13812" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18377406..18377589) /note="source:CACAO_M_E58819_F24_scaffold_9 11241 11420" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18377550..18387405 /note="source:INTACT447_F13_scaffold_6-int 432 10293" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18388505..18389588 /locus_tag="TCM_028807" /note="dbxref CacaoGD:Thecc1EG028807" mRNA join(18388505..18388645,18388814..18389049, 18389444..18389588) /locus_tag="TCM_028807" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.72 coverage" CDS join(18388820..18389049,18389444..18389522) /locus_tag="TCM_028807" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26834.1" /translation="MQPKTRTPSKATTKYDVFDETMVRQQTSLSRSCGRARAARCAQN VEPNDVPTGNDYKEGRNDHLTGRNVTLEDLAASVRDTKAQEFETLMQTPDMSMMKHDI " CDS join(18391826..18391994,18392127..18392287) /locus_tag="TCM_028804" /note="paralog of Thecc1EG028810t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26833.1" /translation="MHMAILKLRVIKPCLVLSYLLHFPLENLPSVPAIIMASKQATVA FAALIICLLLSSGIGVSGQTCYYIEENCRANADCTKICSNQGYESGAICVPNNTGSTH CCCVIDS" mobile_element complement(18395555..18398312) /note="source:CACAO_M_E33282_F13_scaffold_4 6355 10932" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18399319..18401465 /locus_tag="TCM_028809" /note="dbxref CacaoGD:Thecc1EG028809" mRNA join(18399319..18399658,18401044..18401465) /locus_tag="TCM_028809" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage" CDS join(18399504..18399658,18401044..18401239) /locus_tag="TCM_028809" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26835.1" /translation="MKMVVSRNGGFVLPVISVHSVMMPSVKASSDDDYVLCRLLRQWG VTMMICCLSRGRAKAARCAQNVEPNDVPTGDDYKEGRNDHSMGRDVTVEDLIARLQSL AHEFTKFSSRGEYS" gene 18403938..18404609 /locus_tag="TCM_028810" /note="dbxref CacaoGD:Thecc1EG028810" mRNA join(18403938..18404126,18404260..18404609) /locus_tag="TCM_028810" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028804t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1304t1" CDS join(18403958..18404126,18404260..18404420) /locus_tag="TCM_028810" /note="paralog of Thecc1EG028804t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26836.1" /translation="MHMAILKLHVIKPCLVQGYLLHFPFENLPSVPAIIMASKQATVA FAALIICLLLFLGIGVSGQTCYYIEENCRVNADCTKICSNQGYESGAICVPNNTGSTH CCCVIDS" mobile_element 18404906..18404921 /note="source:CACAO_on_SS_E90_scaffold_6 3564 3581" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(18404922..18413520) /note="source:INTACT659F_F82_scaffold_5-int 1629 10175" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18409789..18433412 /locus_tag="TCM_028812" /note="dbxref CacaoGD:Thecc1EG028812" mRNA join(18409789..18409914,18413782..18414026, 18414678..18414757,18415620..18416299,18416381..18416460, 18417827..18417933,18426969..18427117,18428121..18428228, 18428415..18428666,18433233..18433412) /locus_tag="TCM_028812" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.31 coverage" mobile_element 18413496..18413608 /note="source:CACAO_M_S_E100312_F82_scaffold_9 3898 4005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18415930..18416310) /note="source:CACAO_M_E35674_F13_scaffold_5 10895 11273" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(18416194..18416299,18416381..18416460, 18417827..18417933,18426969..18427117,18428121..18428228, 18428415..18428632) /locus_tag="TCM_028812" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26837.1" /translation="MRKLMLSLAGFRSAFGVMSAYRDVAAVVTGPMGVPGGEQSTLVK VQRLCLETGIRSTSTPRTCESLCESLARFRSTFGVKNVCRGFAAVVTGSMGSSGDSGF VLLVIRVHSVMMPSVKAFSDDDYVLCRLLRQWGVTMMICCLSVGHCSCMPVMNPRICL PDSCMPIMDHWVWIVINLVLEGIVKIQPKTRATSWAMTEYDVFDETMVRPQTSSLRSR GRARAARCAQNVEPSDVPISDDYKEGRNDHSTRRHAT" mobile_element 18416309..18417942 /note="source:CACAO_M_E35137_F82_scaffold_5 1651 3284" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18417943..18417991) /note="source:CACAO_M_E65029_F82_scaffold_9 5938 5983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18430587..18430746) /note="source:INTACT494_F82_scaffold_3-int 3171 3325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18430609..18430730 /note="source:CACAO_on_SS_E90_scaffold_6 1 567" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18430731..18434857 /note="source:CACAO_M_S_E121311_F85_scaffold_10 186 4325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18434858..18436190 /note="source:CACAO_on_SS_E90_scaffold_6 568 6816" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18436291..18446101 /note="source:CACAO_on_SS_E90_scaffold_6 2577 12387" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(18445874..18446716) /note="source:CACAO_M_S_E97714_F207_scaffold_8 2496 3338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18446717..18449193 /note="source:CACAO_M_E22639_F33_scaffold_3 1 2479" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18452297..18452778) /note="source:CACAO_M_E52884_F33_scaffold_8 1 481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18452779..18455277) /note="source:CACAO_M_E12556_F207_scaffold_3 1 2503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18455278..18455303) /note="source:CACAO_M_S_E5285_F300_scaffold_1 6616 6634" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18458426..18458563) /note="source:CACAO_Again_on_E100_scaffold_4 99 259" /mobile_element_type="transposon:TIR/hAT" gene complement(18460171..18461612) /locus_tag="TCM_028816" /note="dbxref CacaoGD:Thecc1EG028816" mRNA complement(join(18460171..18460638,18460770..18460828, 18461217..18461612)) /locus_tag="TCM_028816" /product="Thioredoxin-dependent peroxidase 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s09030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022426t1" /inference="similar to AA sequence:ricco:29912.m005490" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc876t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4026t1" mRNA complement(join(18460192..18460638,18460749..18460828, 18461217..18461544)) /locus_tag="TCM_028816" /product="Thioredoxin-dependent peroxidase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s09030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022426t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s44990.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4026t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4026t1" CDS complement(join(18460385..18460638,18460770..18460828, 18461217..18461371)) /locus_tag="TCM_028816" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29912.m005490; paralog of Thecc1EG022426t1" /codon_start=1 /product="Thioredoxin-dependent peroxidase 1 isoform 2" /protein_id="EOY26839.1" /db_xref="TAIR:AT1G65980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9TSX9" /translation="MTCTAVGDTIPDGTLSYADEDDQILNVSVHSLAACKQVILVGVP GAFTPTCSLKHVPGFIEKAEELKSKGIINDPYVMKAWAKSYPENKHVKFFSDSSAAYI KTLGLDLDVSDRGFGVRSQRFALLIDDLKVKVVNVESGGQFKVSSAEDMLKSL" CDS complement(join(18460385..18460638,18460749..18460828, 18461217..18461371)) /locus_tag="TCM_028816" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022426t1" /codon_start=1 /product="Thioredoxin-dependent peroxidase 1 isoform 1" /protein_id="EOY26838.1" /db_xref="Phytozome:POPTR_0001s44990.1" /db_xref="TAIR:AT1G65980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9TSX9" /translation="MTCTAVGDTIPDGTLSYADEDDQILNVSVHSLAACKQVILVGVP GAFTPTCSLKHVPGFIEKAEELKSKGISEIFLISVNDPYVMKAWAKSYPENKHVKFFS DSSAAYIKTLGLDLDVSDRGFGVRSQRFALLIDDLKVKVVNVESGGQFKVSSAEDMLK SL" gene complement(18462156..18467360) /locus_tag="TCM_028817" /note="dbxref CacaoGD:Thecc1EG028817" mRNA complement(join(18462156..18463436,18463525..18464075, 18466368..18466585,18466896..18467360)) /locus_tag="TCM_028817" /product="Major facilitator superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035998t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s18640.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4076t1" CDS complement(join(18462491..18463436,18463525..18464075, 18466368..18466585,18466896..18466998)) /locus_tag="TCM_028817" /note="paralog of Thecc1EG035998t1" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY26840.1" /db_xref="Phytozome:POPTR_0001s18640.1" /db_xref="TAIR:AT1G52190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M817" /translation="MEDKMEGSSDQREMTHQDIPDRQKGGLITMPFIIANESLEKVAS YGLVPNMILYLIKDYHMGVAKGTNTLFFWQAATNFTPILCAFVSDSYLGRYLTIGLGS ICSLLGMILLWLTAMIPQSKPFPCDLLTQSCRSPTAAQMTLLTSSFVLISVGAGGVRP CSLAFGADQLDRRDNPKNDRVLESFFGWYYASAAISVLIALTGIVYIQDHLGWKVGFG VPAILMLLSAIVFFLASPLYLKQKASKSLFTGFVQVVVVAYKNRNLTFPLPNSSGCYH HKRDSNIVAPTDKLRFLNKACIIRNPEQDIAADGSASNSWSLCTVEQVEELKALIKVL PVWSTGIIMSINLSQTSFPVLQATSMDRYLTKKFQIPAGSYAMFNIISLALWVILYDR AILPMASKIKGKPVRLGVKLRMGIGLFLTCMAMVVSAIVENARRRKAIRDGFLDNPRA VLDMSAMWLAPQFCLNGLAEAFTAIGQTEFFYSEVPKSMSSIAAALFGLGLAVANLLA SVVVSIIDDITSRGGKESWVSSNINKGRIDNYYWVLAVLSFINLLYYFVCAWAYGPCG EQVKKVSDAGNGLTKEEELSNLVTKDRDEGNGLKDGEDQ" gene complement(18475147..18479045) /locus_tag="TCM_028818" /note="dbxref CacaoGD:Thecc1EG028818" mRNA complement(join(18475147..18475664,18477608..18477724, 18477867..18478101,18478725..18478838,18478922..18479045)) /locus_tag="TCM_028818" /product="Isochorismatase family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene25823" /inference="similar to AA sequence:Phytozome:POPTR_0003s05020.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:PASA:2:TSA:puevd3b027871t1a2; inference alignment:Newbler:10:TSA:cgbaL_g03378t00002" mRNA complement(join(18475147..18475668,18477608..18477724, 18477867..18478101,18478725..18479045)) /locus_tag="TCM_028818" /product="Isochorismatase family protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene25823" /inference="similar to AA sequence:Phytozome:POPTR_0003s05020.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:PASA:2:TSA:puevd3b027871t1a3; inference alignment:Newbler:10:TSA:cgbaL_g03378t00002" mRNA complement(join(18475360..18475668,18477608..18477724, 18477867..18478101,18478725..18478838,18478922..18479040)) /locus_tag="TCM_028818" /product="Isochorismatase family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene25823" /inference="similar to AA sequence:Phytozome:POPTR_0003s05020.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03378t00002; inference alignment:Newbler:10:TSA:cgbaL_g03378t00002" CDS complement(join(18475595..18475668,18477608..18477724, 18477867..18478101,18478725..18478838,18478922..18478969)) /locus_tag="TCM_028818" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Isochorismatase family protein isoform 1" /protein_id="EOY26841.1" /db_xref="Phytozome:POPTR_0003s05020.1" /db_xref="TAIR:AT3G16190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z51" /translation="MADKWKQTALIVIDMQKDYILEDKIMAVKGGKAIVPNVIKAVEI ARQRGILVVWVVREHDYFGRDVELFRRHFYSPEKGGPTTKGSVGAELVDGLVIKEEDY KLVKTRFSAFFNTNLHIFLQSNGVNNLVVVGVQTPNCIRQTVFDAVAHDYQSVAVIVD ATAAATPEVHDASIFDMKNIGVATPTLQEWCKTNA" CDS complement(join(18475595..18475668,18477608..18477724, 18477867..18478101,18478725..18478811)) /locus_tag="TCM_028818" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Isochorismatase family protein isoform 3" /protein_id="EOY26843.1" /db_xref="Phytozome:POPTR_0003s05020.1" /db_xref="TAIR:AT3G16190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z51" /translation="MAVKGGKAIVPNVIKAVEIARQRGILVVWVVREHDYFGRDVELF RRHFYSPEKGGPTTKGSVGAELVDGLVIKEEDYKLVKTRFSAFFNTNLHIFLQSNGVN NLVVVGVQTPNCIRQTVFDAVAHDYQSVAVIVDATAAATPEVHDASIFDMKNIGVATP TLQEWCKTNA" CDS complement(join(18475651..18475664,18477608..18477724, 18477867..18478101,18478725..18478838,18478922..18478969)) /locus_tag="TCM_028818" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Isochorismatase family protein isoform 2" /protein_id="EOY26842.1" /db_xref="Phytozome:POPTR_0003s05020.1" /db_xref="TAIR:AT3G16190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z51" /translation="MADKWKQTALIVIDMQKDYILEDKIMAVKGGKAIVPNVIKAVEI ARQRGILVVWVVREHDYFGRDVELFRRHFYSPEKGGPTTKGSVGAELVDGLVIKEEDY KLVKTRFSAFFNTNLHIFLQSNGVNNLVVVGVQTPNCIRQTVFDAVAHDYQSVAVIVD ATAAATPEVHDVSLT" mobile_element 18480413..18480605 /note="source:CACAO_Again_on_E14_scaffold_1 1 225" /mobile_element_type="transposon:TIR/hAT" mobile_element 18480574..18480994 /note="source:INTACT215_F33_scaffold_4-int 7973 8399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18483350..18483570 /note="source:CACAO_Again_on_E160_scaffold_6 583 803" /mobile_element_type="transposon:TIR/hAT" mobile_element 18483671..18484067 /note="source:CACAO_Again_on_E160_scaffold_6 804 1200" /mobile_element_type="transposon:TIR/hAT" mobile_element 18485337..18485679 /note="source:CACAO_Again_on_E160_scaffold_6 1201 1543" /mobile_element_type="transposon:TIR/hAT" mobile_element 18494378..18494714 /note="source:CACAO_Again_on_E160_scaffold_6 1544 1880" /mobile_element_type="transposon:TIR/hAT" mobile_element 18495394..18498680 /note="source:CACAO_Again_on_E160_scaffold_6 2301 5587" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(18499697..18500830) /note="source:scaffold_8_CACTA_0859 16513 17631" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18501937..18502016 /note="source:scaffold_9_CACTA_0931 3062 3140" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18503761..18504720) /note="source:CACAO_M_E3884_F22_scaffold_1 8951 9909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18504821..18506948 /note="source:CACAO_M_E22953_F359_scaffold_3 998 3113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18507201..18507338 /note="source:CACAO_M_E70891_F369_scaffold_10 14264 14401" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18507327..18507613) /note="source:CACAO_M_E3884_F22_scaffold_1 9623 9909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18507615..18508129) /note="source:CACAO_M_E53388_F15_scaffold_8 5858 6375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18510033..18510507) /note="source:CACAO_M_E53388_F15_scaffold_8 3276 3749" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18510507..18513157) /note="source:CACAO_M_E3884_F22_scaffold_1 7036 9628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18513157..18513554 /note="source:scaffold_9_CACTA_0931 1109 1517" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18515022..18515040 /note="source:CACAO_M_E22375_F15_scaffold_3 7876 7889" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18515041..18515608) /note="source:CACAO_M_E49872_F15_scaffold_7 2416 3013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18515604..18516516) /note="source:INTACT93_F15_scaffold_3-int 3636 4549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18516617..18516967) /note="source:CACAO_M_E3109_F15_scaffold_1 2797 3147" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18523048..18524457) /note="source:CACAO_M_E58324_F9_scaffold_9 8855 10225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18527660..18527709) /note="source:INTACT296_F13_scaffold_9-int 13194 13243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18527690..18528167) /note="source:INTACT296_F13_scaffold_9-int 12491 12996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18528168..18531273 /note="source:CACAO_M_E49168_F15_scaffold_6 1 3106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18531274..18532000) /note="source:CACAO_M_E58324_F9_scaffold_9 7663 8385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18542619..18542705) /note="source:CACAO_M_E22186_F143_scaffold_3 9946 10026" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18542664..18542711 /note="source:CACAO_M_E49559_F88_scaffold_7 7632 7679" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18542784..18543565 /note="source:CACAO_M_E44899_F328_scaffold_6 6404 7184" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18545388..18545844) /note="source:CACAO_Again_on_E205_scaffold_9 1375 1831" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(18545845..18545910) /note="source:CACAO_M_E5800_F12_scaffold_2 4513 5023" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18546447..18547568 /note="source:CACAO_M_E84232_F328_scaffold_10 1 1123" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18547569..18548004) /note="source:CACAO_M_E10437_F15_scaffold_2 1675 2111" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18550931..18553062) /note="source:CACAO_M_E45364_F328_scaffold_6 6525 8651" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18554818..18555951 /note="source:CACAO_M_E49173_F86_scaffold_6 1148 2281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18555952..18556199) /note="source:CACAO_M_E45364_F328_scaffold_6 6282 6529" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18556200..18557267) /note="source:CACAO_M_E10437_F15_scaffold_2 1044 2111" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18559893..18560594) /note="source:CACAO_M_E45364_F328_scaffold_6 5521 6222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18560595..18560740) /note="source:CACAO_M_E22265_F82_scaffold_3 12849 12994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18567331..18569684) /note="source:CACAO_M_E59582_F53_scaffold_9 3163 5517" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18590041..18590555) /note="source:scaffold_4_CACTA_0503 2616 3130" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18590656..18592531 /note="source:INTACT615_F273_scaffold_2-int 3578 5461" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18591655..18593652) /note="source:scaffold_4_CACTA_0503 4737 6187" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18593753..18594266) /note="source:scaffold_4_CACTA_0503 4198 4712" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18594689..18595232) /note="source:scaffold_5_CACTA_0610 9334 9874" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18595229..18595405) /note="source:INTACT646F_F95_scaffold_5-int 5721 5897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18595402..18596899) /note="source:CACAO_M_E45364_F328_scaffold_6 4042 5527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18596896..18597466) /note="source:CACAO_on_E732_scaffold_9 3398 3932" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(18597567..18598531) /note="source:CACAO_on_E732_scaffold_9 2378 3342" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(18598632..18601720) /note="source:CACAO_PIF_E8_scaffold_1 1817 4862" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 18601721..18601959 /note="source:CACAO_M_E44087_F42_scaffold_5 1 239" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18602339..18602611 /note="source:CACAO_M_E1635_F42_scaffold_1 619 893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18602910..18603888 /note="source:CACAO_M_E44087_F42_scaffold_5 1193 2173" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18605758..18606658) /note="source:CACAO_PIF_E8_scaffold_1 1 955" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 18607085..18607359 /note="source:INTACT699_F86_scaffold_3-int 5647 5919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18607418..18607564 /note="source:INTACT775_F86_scaffold_2-int 5717 5868" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18607670..18608656) /note="source:CACAO_M_E57743_F204_scaffold_9 2527 3549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18617616..18617700) /note="source:scaffold_8_CACTA_0858 10727 10811" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18617677..18619057) /note="source:CACAO_M_E52617_F328_scaffold_7 1 1370" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18617701..18617721 /note="source:CACAO_M_E49559_F88_scaffold_7 5226 5321" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18624466..18625458) /note="source:CACAO_M_S_E84822_F86_scaffold_7 4010 5003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18626619..18627300) /note="source:CACAO_M_E69760_F9_scaffold_9 8679 9350" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18627185..18627321 /note="source:CACAO_M_E69460_F12_scaffold_9 5048 5184" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18627422..18627713 /note="source:CACAO_M_E69460_F12_scaffold_9 5188 5479" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18627999..18628391 /note="source:CACAO_M_E11415_F328_scaffold_2 10890 11282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18628492..18629464 /note="source:CACAO_M_E69460_F12_scaffold_9 6185 7159" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18629466..18631626 /note="source:CACAO_M_E57859_F86_scaffold_9 6417 8582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18631727..18632272 /note="source:CACAO_M_E22420_F86_scaffold_3 2380 2924" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18633892..18636696) /note="source:CACAO_M_E44014_F172_scaffold_5 96 2882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18636674..18636864) /note="source:CACAO_Mariner_E176_scaffold_6 1 191" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 18636697..18637260 /note="source:CACAO_M_E1489_F33_scaffold_1 1 564" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18639001..18639297 /note="source:CACAO_M_E22152_F33_scaffold_3 1067 1363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18640472..18642556 /note="source:CACAO_M_E12782_F33_scaffold_3 874 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18642533..18642673 /note="source:CACAO_M_E14081_F316_scaffold_3 3855 3994" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18642557..18642656) /note="source:CACAO_M_E69614_F33_scaffold_9 1 106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18645857..18645990) /note="source:INTACT901F_F95_scaffold_6-int 12442 12552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18645988..18646177) /note="source:CACAO_on_S_E390_scaffold_9 5547 5736" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18646278..18646772 /note="source:CACAO_M_E12137_F33_scaffold_3 2524 3014" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18646703..18647501) /note="source:CACAO_M_E49857_F85_scaffold_7 1 818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18647502..18647873) /note="source:CACAO_M_E52278_F17_scaffold_7 516 889" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18647870..18648868 /note="source:CACAO_Again_on_E205_scaffold_9 373 1373" /mobile_element_type="transposon:TIR/hAT" mobile_element 18648865..18649309 /note="source:CACAO_Again_on_E205_scaffold_9 3475 3920" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(18649006..18649533) /note="source:scaffold_9_CACTA_0934 4170 4717" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18649785..18650507) /note="source:CACAO_on_S_E390_scaffold_9 10640 11362" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18651165..18652171 /note="source:CACAO_M_E33422_F33_scaffold_4 1 1008" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18652946..18653735) /note="source:CACAO_M_E12297_F14_scaffold_3 6346 7134" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18653736..18654419 /note="source:CACAO_M_E44425_F33_scaffold_6 8715 9399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18655606..18655903) /note="source:INTACT901F_F95_scaffold_6-int 11841 12137" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18656514..18656575 /note="source:CACAO_M_E49559_F88_scaffold_7 7677 7739" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18656670..18656693 /note="source:CACAO_M_S_E17777_F2_scaffold_3 3014 3050" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18656694..18656759 /note="source:scaffold_3_CACTA_0382 10552 10624" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18656760..18656828 /note="source:CACAO_M_S_E17777_F2_scaffold_3 3051 3163" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18657359..18658006 /note="source:CACAO_M_S_E89594_F17_scaffold_8 1 649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18660536..18661582 /note="source:CACAO_M_E33872_F33_scaffold_4 1 1072" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18661582..18661892) /note="source:CACAO_M_E492_F82_scaffold_1 1683 1993" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18674843..18676017) /note="source:CACAO_M_E22588_F143_scaffold_3 1 1172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18676018..18676502 /note="source:CACAO_M_S_E50731_F17_scaffold_4 1016 1504" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18677436..18685241 /note="source:CACAO_M_E49195_F17_scaffold_6 1 7806" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18685342..18690618 /note="source:CACAO_M_E49195_F17_scaffold_6 7807 13083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18692921..18694849 /note="source:CACAO_M_E49195_F17_scaffold_6 13084 15012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18695348..18695718 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17252 17579" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18695771..18695886 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17760 17862" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18697090..18698348 /note="source:CACAO_M_E22484_F328_scaffold_3 4030 5293" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18708442..18710679 /note="source:CACAO_M_E42782_F273_scaffold_5 943 2932" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18715618..18720468) /locus_tag="TCM_028827" /note="dbxref CacaoGD:Thecc1EG028827" mRNA complement(join(18715618..18716309,18716939..18716983, 18718204..18718260,18718416..18718481,18718744..18718809, 18719048..18719122,18719282..18719618,18720048..18720228)) /locus_tag="TCM_028827" /product="Basic helix-loop-helix DNA-binding superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037840t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s18660.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09879t00001" mRNA complement(join(18715979..18716309,18716939..18717006, 18718204..18718260,18718416..18718481,18718744..18718809, 18719048..18719122,18719282..18719618,18720048..18720468)) /locus_tag="TCM_028827" /product="Basic helix-loop-helix DNA-binding superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037840t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s18660.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc429t2; inference alignment:Newbler:10:TSA:cgbaB_g09879t00001" CDS complement(join(18716181..18716309,18716939..18716983, 18718204..18718260,18718416..18718481,18718744..18718809, 18719048..18719122,18719282..18719618,18720048..18720226)) /locus_tag="TCM_028827" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037840t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein isoform 1" /protein_id="EOY26844.1" /db_xref="Phytozome:POPTR_0001s18660.1" /db_xref="TAIR:AT4G29100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GG53" /translation="MMAGNSSWWSMHPPSQQSSALLTPSPSFFPPQYVLGSSTLPPNS LADNQELPQSWSQLLLGGLSGEEERFGPSHFQTKKLENWENQILNPSPRVPVVDVKQE VTQNSNLYGHGDEEFQASKPPAAVVAWSHIMPVSSPRSCITSLSSSNILDFSYNKAAD GTNTQPLDHSSECNSTATGGVCKKARVQPSSSQPPLKVRKEKLGDRVTTLHQLVSPFG KTDTASVLLEAIGYIRFLQGQIEALSSPYLGTASTNMRNQQSVQRERNCAFPEDQGQD IQDKPKDLRSRGLCLVPVSCTQQVGSDNGADYWAPAFGGGF" CDS complement(join(18716992..18717006,18718204..18718260, 18718416..18718481,18718744..18718809,18719048..18719122, 18719282..18719618,18720048..18720226)) /locus_tag="TCM_028827" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037840t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein isoform 2" /protein_id="EOY26845.1" /db_xref="Phytozome:POPTR_0001s18660.1" /db_xref="TAIR:AT4G29100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GG53" /translation="MMAGNSSWWSMHPPSQQSSALLTPSPSFFPPQYVLGSSTLPPNS LADNQELPQSWSQLLLGGLSGEEERFGPSHFQTKKLENWENQILNPSPRVPVVDVKQE VTQNSNLYGHGDEEFQASKPPAAVVAWSHIMPVSSPRSCITSLSSSNILDFSYNKAAD GTNTQPLDHSSECNSTATGGVCKKARVQPSSSQPPLKVRKEKLGDRVTTLHQLVSPFG KTDTASVLLEAIGYIRFLQGQIEALSSPYLGTASTNMRNQQSVILI" gene complement(18722832..18727657) /locus_tag="TCM_028828" /note="dbxref CacaoGD:Thecc1EG028828" mRNA complement(join(18722832..18723773,18724155..18724321, 18724892..18725009,18725367..18725467,18725570..18725706, 18726411..18726564,18726658..18726774,18727352..18727657)) /locus_tag="TCM_028828" /product="Pex2/Pex12 N-terminal domain-containing protein / zinc finger family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g21760.1" /inference="similar to AA sequence:Phytozome:Glyma08g21760.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08887t00001" CDS complement(join(18723644..18723773,18724155..18724321, 18724892..18725009,18725367..18725467,18725570..18725706, 18726411..18726564,18726658..18726774,18727352..18727465)) /locus_tag="TCM_028828" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pex2/Pex12 N-terminal domain-containing protein / zinc finger family protein isoform 1" /protein_id="EOY26846.1" /db_xref="Phytozome:Glyma08g21760.1" /db_xref="TAIR:AT1G79810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CA86" /translation="MISVRSNPSPPALPQEDAWITSYQKLLPHWHSLSLSHQYSTLPI SISRVNQFDAARLDIEMSAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIW VDKPTPGNALMNLRYRDERAMEIRRKVRTGLEGPGLTVAQKMWYCIATVGGQYIWARL QSFSAFRRWGDSEQRPLARRAWGLMQRIEGLYKAASFGNLLIFLYTGRYRNLIERALR ARLVYESPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSTVKSFLHPFSKDKSSS STEDDSTCPICRASPTLPYLALPCQHRYCYYCLRTRCAAAPSFRCSRCSEPVVAMQRH GSVVEHRTQSQ" mRNA complement(join(<18724176..18724321,18724892..18725009, 18725367..18725467,18725570..18725706,18726411..18726564, 18726658..18726774,18727352..>18727612)) /locus_tag="TCM_028828" /product="Pex2/Pex12 N-terminal domain-containing protein / zinc finger family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g21760.1" /inference="similar to AA sequence:Phytozome:Glyma08g21760.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07126t00001; inference alignment:Newbler:10:TSA:cgbaB_g08887t00001" CDS complement(join(<18724178..18724321,18724892..18725009, 18725367..18725467,18725570..18725706,18726411..18726564, 18726658..18726774,18727352..>18727612)) /locus_tag="TCM_028828" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pex2/Pex12 N-terminal domain-containing protein / zinc finger family protein isoform 2" /protein_id="EOY26847.1" /db_xref="Phytozome:Glyma08g21760.1" /db_xref="TAIR:AT1G79810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CA86" /translation="TSQGFLAAFSETGQSPGKKRNHLLIFKASTSNKSHQIIFPKKTH IITHQMISVRSNPSPPALPQEDAWITSYQKLLPHWHSLSLSHQYSTLPISISRVNQFD AARLDIEMSAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNA LMNLRYRDERAMEIRRKVRTGLEGPGLTVAQKMWYCIATVGGQYIWARLQSFSAFRRW GDSEQRPLARRAWGLMQRIEGLYKAASFGNLLIFLYTGRYRNLIERALRARLVYESPN MNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSTVKSFLHPFSKDKSSSSTEDDSTCP ICRASPTLPY" gene complement(18727767..18728811) /locus_tag="TCM_028829" /note="dbxref CacaoGD:Thecc1EG028829" mRNA complement(18727767..18728811) /locus_tag="TCM_028829" /product="Emb:CAB51178.1, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017048001" /inference="similar to AA sequence:TAIR:AT3G27750.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4089t1" CDS complement(18727982..18728662) /locus_tag="TCM_028829" /codon_start=1 /product="Emb:CAB51178.1, putative" /protein_id="EOY26848.1" /db_xref="TAIR:AT3G27750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVW6" /translation="MASYLCFNLTSLYSLYPIPTQRSFTPIRCGPRDNRGPLVKGRIL STEAIQAIQSLKRAYRNSSPTTTNTQLPSLSRLIKSDLLATLLELLRQDQCILALHVL STVRSEYPPLHLTLYADVVTALARNQLGGEIDGLIGEMEAIECDDEKALVRLIKGVVG AGRRESTVRICGLMKENGVGSRKRVGQYVVKVLSKGLRRFGEVGLALEVESEFGGSSR VSLDKLRI" mobile_element complement(18733272..18733309) /note="source:scaffold_9_CACTA_0936 4284 4321" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18733277..18733356 /note="source:scaffold_5_CACTA_0613 861 946" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18733310..18733320 /note="source:CACAO_M_S_E90022_F9_scaffold_8 3105 3153" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18736790..18736869 /note="source:scaffold_1_CACTA_0011 7457 7537" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18736809..18736886) /note="source:scaffold_5_CACTA_0596 6983 7061" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18737813..18740850 /note="source:scaffold_4_CACTA_0497 59 3008" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18742078..18743905 /note="source:INTACT594_F265_scaffold_8-int 1275 3106" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18746518..18750380 /locus_tag="TCM_028831" /note="dbxref CacaoGD:Thecc1EG028831" mRNA join(18746518..18746918,18749638..18750380) /locus_tag="TCM_028831" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.56 coverage" CDS join(18746756..18746918,18749638..18749780) /locus_tag="TCM_028831" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26849.1" /translation="MNGRKEKMKVGWMRGSMVARGGQRSSREKWEKCKDGDSKVGGLC DGRRGSLVIVVVLSRAIPFPALCCRLPACAAPSAPLGSCSFTFPPSIYYPYAFIFFL" gene 18750279..18753843 /locus_tag="TCM_028832" /note="dbxref CacaoGD:Thecc1EG028832" mRNA join(18750279..18750505,18750642..18751173, 18751655..18751869,18752690..>18752826) /locus_tag="TCM_028832" /product="Phytochrome-associated protein 2 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30146.m003546" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037837t1" /inference="similar to AA sequence:ricco:30146.m003546" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc161t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16074t1" mRNA join(18750346..18751173,18751655..18751869, 18752690..18752831,18753190..18753251,18753490..18753840) /locus_tag="TCM_028832" /product="Phytochrome-associated protein 2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30146.m003546" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037837t1" /inference="similar to AA sequence:ricco:30146.m003546" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4300t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16074t1" mRNA join(18750425..18751173,18751655..18751869, 18752690..18752831,18753190..18753251,18753467..18753843) /locus_tag="TCM_028832" /product="Phytochrome-associated protein 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30146.m003546" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037837t1" /inference="similar to AA sequence:ricco:30146.m003546" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16074t1" CDS join(18750611..18751173,18751655..18751869, 18752690..18752831,18753190..18753251,18753467..18753591) /locus_tag="TCM_028832" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30146.m003546; paralog of Thecc1EG037837t1" /codon_start=1 /product="Phytochrome-associated protein 2 isoform 1" /protein_id="EOY26850.1" /db_xref="TAIR:AT4G29080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZSY8" /translation="MSTPLEHDYIGLTETSPMERSSEKISSSSSSSSTHSIEDKANKT TNNTTLNLKETELRLGLPGSQSPERKVSLFGKDLESNDKNSGFSVSPLKNLVSGAKRG FSDAIDASNGKWVFPMNGKSDVELAKGAGLASSRGCLESKNNSQQAKVSIPAMKEVGG LPQSPKPVQDKKNLVSPPNEHASAPAAKAQVVGWPPIRSFRKNTMASNLAKNSDDAAG CLYVKVSMDGAPYLRKVDLKTYKNYTELSSALEKMFSCFTIGQCSSHGLPVRDGLTES RLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLVSPYACF QLQGPWRNARTRPKRKSMVKTKNKQVLKTPEFEG" CDS join(18750611..18751173,18751655..18751869, 18752690..18752831,18753190..18753251,18753490..18753527) /locus_tag="TCM_028832" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30146.m003546; paralog of Thecc1EG037837t1" /codon_start=1 /product="Phytochrome-associated protein 2 isoform 2" /protein_id="EOY26851.1" /db_xref="TAIR:AT4G29080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZSY8" /translation="MSTPLEHDYIGLTETSPMERSSEKISSSSSSSSTHSIEDKANKT TNNTTLNLKETELRLGLPGSQSPERKVSLFGKDLESNDKNSGFSVSPLKNLVSGAKRG FSDAIDASNGKWVFPMNGKSDVELAKGAGLASSRGCLESKNNSQQAKVSIPAMKEVGG LPQSPKPVQDKKNLVSPPNEHASAPAAKAQVVGWPPIRSFRKNTMASNLAKNSDDAAG CLYVKVSMDGAPYLRKVDLKTYKNYTELSSALEKMFSCFTIGQCSSHGLPVRDGLTES RLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAMEK CKNQT" CDS join(18750662..18751173,18751655..18751869, 18752690..>18752826) /locus_tag="TCM_028832" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30146.m003546; paralog of Thecc1EG037837t1" /codon_start=1 /product="Phytochrome-associated protein 2 isoform 3" /protein_id="EOY26852.1" /db_xref="TAIR:AT4G29080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZSY8" /translation="MERSSEKISSSSSSSSTHSIEDKANKTTNNTTLNLKETELRLGL PGSQSPERKVSLFGKDLESNDKNSGFSVSPLKNLVSGAKRGFSDAIDASNGKWVFPMN GKSDVELAKGAGLASSRGCLESKNNSQQAKVSIPAMKEVGGLPQSPKPVQDKKNLVSP PNEHASAPAAKAQVVGWPPIRSFRKNTMASNLAKNSDDAAGCLYVKVSMDGAPYLRKV DLKTYKNYTELSSALEKMFSCFTIGQCSSHGLPVRDGLTESRLMDLLHGSEYVLTYED KDGDWMLVGDVP" mobile_element complement(18753630..18753678) /note="source:scaffold_5_CACTA_0584 1976 2024" /mobile_element_type="transposon:TIR/CACTA" gene complement(18754204..18758902) /locus_tag="TCM_028833" /note="dbxref CacaoGD:Thecc1EG028833" mRNA complement(join(18754204..18754903,18756187..18756302, 18756426..18756870,18758085..18758902)) /locus_tag="TCM_028833" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30146.m003545" /inference="similar to AA sequence:TAIR:AT3G16200.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05899t00001" CDS complement(join(18754482..18754903,18756187..18756302, 18756426..18756870,18758085..18758523)) /locus_tag="TCM_028833" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26853.1" /db_xref="TAIR:AT3G16200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU25" /translation="MSTRHSQSHSHSHSHSHSPKTPTKMLDRALSSRRTQPHSDFDFP ATAAPTAVSSDLESSSLLADESKTKKQHLYLLATNYISRLGLVKSPCLCLSLCLLFVL FMLFSLMLNSRSFVCVSSYDPISRASFFGLDGLDSDFGSLGVPWCRSKHGKTVEWTSK DLIKGLEEFVPVYETRPIKNNMYGMGFDHSFGLWFIARWLKPDIMIESGAFKGHSTWV LRQAMPDRPIISLTPRHPEKYLKKGPAYVDGNCTYFAGKDFVDFGSVDWDRVLKNHGI SDFSRVLVFFDDHQNELKRLKQALKAGFHHLVFEDNYDTGTGDHYSLRQICDQFYIRG GGHSCFRDSDEARIRSKRKKFWEKAVDIDELCGPHEAWWGVSGEMRDNFNHNKTAISY GEHFQNSRFVESILDVYWELPPAAGPSLTHQTRYDPARAPTPIVEDGRYGLFQRLGLG RLERSVFNGYTQMVYLRISKPES" gene 18758963..18763138 /locus_tag="TCM_028834" /note="dbxref CacaoGD:Thecc1EG028834" mRNA join(18758963..18760044,18761322..18762251, 18762349..18762419,18762574..18762788) /locus_tag="TCM_028834" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400045966" /inference="similar to AA sequence:Phytozome:GSVIVT01017044001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1029t2" mRNA join(18759003..18760044,18761322..18762251, 18762349..18762419,18762506..18763138) /locus_tag="TCM_028834" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400045966" /inference="similar to AA sequence:Phytozome:GSVIVT01017044001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1029t2; alternateUTRof:Thecc1EG028834t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1029t2" mRNA join(18759290..18760044,18761322..18762419, 18762506..18763138) /locus_tag="TCM_028834" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400045966" /inference="similar to AA sequence:Phytozome:GSVIVT01017044001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1029t1; alternateUTRof:Thecc1EG028834t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1029t2" CDS join(18759394..18760044,18761322..18762050) /locus_tag="TCM_028834" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY26854.1" /db_xref="Phytozome:GSVIVT01017044001" /db_xref="TAIR:AT3G50390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H901" /translation="MASLDSPNSPPNSSFAIRETTTHPKTNVASILDPAPNSPPNPSF AVRESTAHSFLRSISTKEASFAGFHFSPPRYSTPSLHSTSPLSSPLRTFSPNPASNHT ISLDASYKCLSSVLKKDGQILSIAISNGIVYTGSDTNLIRIWKLPEFSECGVLKTKAC TVVAIAVSHDRLFAGYGDTKIRVWRRTWDGTLKHVKLATIPRTGGYVRSYIAGKDKMM RHMGPITSLAVNISDNILYSASLDKTVKVWRISDLKCIENIPAHSEPINAIVVADDGI LYTASDDATIRVWRRNFCRGEWPHSLMVTLPAKCSPVKTLTLTGDGGVLYGGCTDGYV HYWLKGWLSGQLRYGGALQGHTHAVMCLATVSNFVISGSADSSSRVWTREQDGQHVCL AVLVGHRGPIRCVTAFLGHSGEEVEDGCTICTGSLDGVLKVWRVTPMKSASGRFVKND YFELEEEGV" CDS join(18759394..18760044,18761322..18762050) /locus_tag="TCM_028834" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY26855.1" /db_xref="Phytozome:GSVIVT01017044001" /db_xref="TAIR:AT3G50390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H901" /translation="MASLDSPNSPPNSSFAIRETTTHPKTNVASILDPAPNSPPNPSF AVRESTAHSFLRSISTKEASFAGFHFSPPRYSTPSLHSTSPLSSPLRTFSPNPASNHT ISLDASYKCLSSVLKKDGQILSIAISNGIVYTGSDTNLIRIWKLPEFSECGVLKTKAC TVVAIAVSHDRLFAGYGDTKIRVWRRTWDGTLKHVKLATIPRTGGYVRSYIAGKDKMM RHMGPITSLAVNISDNILYSASLDKTVKVWRISDLKCIENIPAHSEPINAIVVADDGI LYTASDDATIRVWRRNFCRGEWPHSLMVTLPAKCSPVKTLTLTGDGGVLYGGCTDGYV HYWLKGWLSGQLRYGGALQGHTHAVMCLATVSNFVISGSADSSSRVWTREQDGQHVCL AVLVGHRGPIRCVTAFLGHSGEEVEDGCTICTGSLDGVLKVWRVTPMKSASGRFVKND YFELEEEGV" CDS join(18759394..18760044,18761322..18762050) /locus_tag="TCM_028834" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY26856.1" /db_xref="Phytozome:GSVIVT01017044001" /db_xref="TAIR:AT3G50390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H901" /translation="MASLDSPNSPPNSSFAIRETTTHPKTNVASILDPAPNSPPNPSF AVRESTAHSFLRSISTKEASFAGFHFSPPRYSTPSLHSTSPLSSPLRTFSPNPASNHT ISLDASYKCLSSVLKKDGQILSIAISNGIVYTGSDTNLIRIWKLPEFSECGVLKTKAC TVVAIAVSHDRLFAGYGDTKIRVWRRTWDGTLKHVKLATIPRTGGYVRSYIAGKDKMM RHMGPITSLAVNISDNILYSASLDKTVKVWRISDLKCIENIPAHSEPINAIVVADDGI LYTASDDATIRVWRRNFCRGEWPHSLMVTLPAKCSPVKTLTLTGDGGVLYGGCTDGYV HYWLKGWLSGQLRYGGALQGHTHAVMCLATVSNFVISGSADSSSRVWTREQDGQHVCL AVLVGHRGPIRCVTAFLGHSGEEVEDGCTICTGSLDGVLKVWRVTPMKSASGRFVKND YFELEEEGV" gene 18762932..18772013 /locus_tag="TCM_028835" /note="dbxref CacaoGD:Thecc1EG028835" mRNA join(18762932..18763022,18764314..18764475, 18764966..18765029,18765890..18766031,18766414..18766586, 18766936..18766973,18767049..18767128,18767601..18767668, 18768400..18768625,18769358..18769470,18769555..18769620, 18769943..18770033,18770190..18770257,18770715..18770752, 18770919..18772013) /locus_tag="TCM_028835" /product="Eukaryotic LigT isoform 3" /inference="alignment:exonerate- protein:2:ricco:30146.m003543" /inference="similar to AA sequence:ricco:30146.m003543" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:PASA:2:TSA:puevd3b027888t1a2; inference alignment:Newbler:10:TSA:cgbaL_g01482t00002" mRNA join(18762932..18763022,18764314..18764475, 18765890..18766031,18766414..18766586,18766936..18766973, 18767049..18767128,18767601..18767668,18768307..18768625, 18769358..18769470,18769555..18769620,18769943..18770033, 18770190..18770257,18770715..18770752,18770919..18772013) /locus_tag="TCM_028835" /product="Eukaryotic LigT isoform 4" /inference="alignment:exonerate- protein:2:ricco:30146.m003543" /inference="similar to AA sequence:ricco:30146.m003543" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:PASA:2:TSA:puevd3b027888t1a3; inference alignment:Newbler:10:TSA:cgbaL_g01482t00002" mRNA join(18764354..18764475,18764966..18765029, 18765890..18766031,18766414..18766586,18766936..18766973, 18767049..18767128,18767601..18767668,18768307..18768629, 18768744..18768805,18769358..18769470,18769555..18769620, 18769943..18770033,18770190..18770257,18770715..18770752, 18770919..18771714) /locus_tag="TCM_028835" /product="Eukaryotic LigT isoform 1" /inference="alignment:exonerate- protein:2:ricco:30146.m003543" /inference="similar to AA sequence:ricco:30146.m003543" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01482t00002" mRNA join(18764429..18764475,18764966..18765029, 18765890..18766031,18766414..18766586,18766936..18766973, 18767049..18767128,18767601..18767668,18768307..18768625, 18769358..18769470,18769555..18769620,18769943..18770033, 18770190..18770257,18770715..18770752,18770919..18771363) /locus_tag="TCM_028835" /product="Eukaryotic LigT isoform 2" /inference="alignment:exonerate- protein:2:ricco:30146.m003543" /inference="similar to AA sequence:ricco:30146.m003543" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00433t00001; inference alignment:Newbler:10:TSA:cgbaL_g01482t00002; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc956t3" CDS join(18764450..18764475,18764966..18765029, 18765890..18766031,18766414..18766586,18766936..18766973, 18767049..18767128,18767601..18767668,18768307..18768629, 18768744..18768805,18769358..18769470,18769555..18769620, 18769943..18770033,18770190..18770257,18770715..18770752, 18770919..18771105) /locus_tag="TCM_028835" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30146.m003543" /codon_start=1 /product="Eukaryotic LigT isoform 1" /protein_id="EOY26857.1" /db_xref="TAIR:AT3G16230.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DH47" /translation="MLACRSLFRVDRLLKLTNTYVKLKPFNCFQGYYSYHSLSLDLRI SVAKKKLGTMDKKKRKIGTPVWKPVCTQPSSLEEHAIKDVMVESENGSEMQEVNEVTN ATVSPKALEDDIEDGALKEEPVLSDEKHSLSVEIGASLIRFVRGKEGSTKEKIEKEMG VQIILPSSKQEDSIMIEGTSADSVTKASKEIQHIIDEAVKTPILDYSHFVSLPLAIHP ELVDKLVDFQNSILGISDACVDDNQEDNSDGDTSEDEAQEQQSGKGPAMAVEVKVSDD KKSVKVDVSSIPFVSYVPKESKSSNLSGKHKYLYSICLKLKLILLLVVPNLGIEKSIF IKPKTFHLTVLMLKLWNKERVNLAAEVLKSISSKVMDALDNRPIFVRLKGLNCMRGSL ARARVVYAPVEEIGSENRLLCACEVIINAFVEAGLVLEKDARHELKLHATVMNARHRK RKGKRGKFDSFDARGIFKQFGSEEWGEYLIREAHLSQRFKFDEYGYYHCCASIPFPEN MQVD" CDS join(18764450..18764475,18764966..18765029, 18765890..18766031,18766414..18766586,18766936..18766973, 18767049..18767128,18767601..18767668,18768307..18768625, 18769358..18769470,18769555..18769620,18769943..18770033, 18770190..18770257,18770715..18770752,18770919..18771105) /locus_tag="TCM_028835" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30146.m003543" /codon_start=1 /product="Eukaryotic LigT isoform 2" /protein_id="EOY26858.1" /db_xref="TAIR:AT3G16230.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DH47" /translation="MLACRSLFRVDRLLKLTNTYVKLKPFNCFQGYYSYHSLSLDLRI SVAKKKLGTMDKKKRKIGTPVWKPVCTQPSSLEEHAIKDVMVESENGSEMQEVNEVTN ATVSPKALEDDIEDGALKEEPVLSDEKHSLSVEIGASLIRFVRGKEGSTKEKIEKEMG VQIILPSSKQEDSIMIEGTSADSVTKASKEIQHIIDEAVKTPILDYSHFVSLPLAIHP ELVDKLVDFQNSILGISDACVDDNQEDNSDGDTSEDEAQEQQSGKGPAMAVEVKVSDD KKSVKVDVSSIPFVSYVPKESKSSNLSDLGIEKSIFIKPKTFHLTVLMLKLWNKERVN LAAEVLKSISSKVMDALDNRPIFVRLKGLNCMRGSLARARVVYAPVEEIGSENRLLCA CEVIINAFVEAGLVLEKDARHELKLHATVMNARHRKRKGKRGKFDSFDARGIFKQFGS EEWGEYLIREAHLSQRFKFDEYGYYHCCASIPFPENMQVD" CDS join(18764450..18764475,18764966..18765029, 18765890..18766031,18766414..18766586,18766936..18766973, 18767049..18767128,18767601..18767668,18768400..18768625, 18769358..18769470,18769555..18769620,18769943..18770033, 18770190..18770257,18770715..18770752,18770919..18771105) /locus_tag="TCM_028835" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30146.m003543" /codon_start=1 /product="Eukaryotic LigT isoform 3" /protein_id="EOY26859.1" /db_xref="TAIR:AT3G16230.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DH47" /translation="MLACRSLFRVDRLLKLTNTYVKLKPFNCFQGYYSYHSLSLDLRI SVAKKKLGTMDKKKRKIGTPVWKPVCTQPSSLEEHAIKDVMVESENGSEMQEVNEVTN ATVSPKALEDDIEDGALKEEPVLSDEKHSLSVEIGASLIRFVRGKEGSTKEKIEKEMG VQIILPSSKQEDSIMIEGTSADSVTKASKEIQHIIDENSILGISDACVDDNQEDNSDG DTSEDEAQEQQSGKGPAMAVEVKVSDDKKSVKVDVSSIPFVSYVPKESKSSNLSDLGI EKSIFIKPKTFHLTVLMLKLWNKERVNLAAEVLKSISSKVMDALDNRPIFVRLKGLNC MRGSLARARVVYAPVEEIGSENRLLCACEVIINAFVEAGLVLEKDARHELKLHATVMN ARHRKRKGKRGKFDSFDARGIFKQFGSEEWGEYLIREAHLSQRFKFDEYGYYHCCASI PFPENMQVD" CDS join(18765959..18766031,18766414..18766586, 18766936..18766973,18767049..18767128,18767601..18767668, 18768307..18768625,18769358..18769470,18769555..18769620, 18769943..18770033,18770190..18770257,18770715..18770752, 18770919..18771105) /locus_tag="TCM_028835" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30146.m003543" /codon_start=1 /product="Eukaryotic LigT isoform 4" /protein_id="EOY26860.1" /db_xref="TAIR:AT3G16230.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DH47" /translation="MDKKKRKIGTPVWKPVCTQPSSLEEHAIKDVMVESENGSEMQEV NEVTNATVSPKALEDDIEDGALKEEPVLSDEKHSLSVEIGASLIRFVRGKEGSTKEKI EKEMGVQIILPSSKQEDSIMIEGTSADSVTKASKEIQHIIDEAVKTPILDYSHFVSLP LAIHPELVDKLVDFQNSILGISDACVDDNQEDNSDGDTSEDEAQEQQSGKGPAMAVEV KVSDDKKSVKVDVSSIPFVSYVPKESKSSNLSDLGIEKSIFIKPKTFHLTVLMLKLWN KERVNLAAEVLKSISSKVMDALDNRPIFVRLKGLNCMRGSLARARVVYAPVEEIGSEN RLLCACEVIINAFVEAGLVLEKDARHELKLHATVMNARHRKRKGKRGKFDSFDARGIF KQFGSEEWGEYLIREAHLSQRFKFDEYGYYHCCASIPFPENMQVD" misc_feature join(18767103..18767128,18767601..18768266) /locus_tag="TCM_028835" /note="Gene fragment of Thecc1EG028835t1; dbxref gnl|CacaoGD|Thecc1EG028835t1; quality class is mediumpartial-partof is thecc1eg028835t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc947t12; dbxref CacaoGD:Thecc1EG028836t1" gene 18774282..18776155 /locus_tag="TCM_028837" /note="dbxref CacaoGD:Thecc1EG028837" mRNA join(18774282..18774468,18774736..18774986, 18775314..18776155) /locus_tag="TCM_028837" /product="Delta tonoplast integral protein" /inference="alignment:exonerate- protein:2:ricco:30146.m003542" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015946t1" /inference="similar to AA sequence:ricco:30146.m003542" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1508t5" CDS join(18774342..18774468,18774736..18774986, 18775314..18775682) /locus_tag="TCM_028837" /note="dbxref ricco:30146.m003542; paralog of Thecc1EG015946t1" /codon_start=1 /product="Delta tonoplast integral protein" /protein_id="EOY26861.1" /db_xref="TAIR:AT3G16240.1" /translation="MARIAFGRFDDSFSLGSLKAYLAEFISTLLFVFAGVGSAIAYNK LTSDAALDPDGLIAVAICHGFALFVAVAVGANISGGHVNPAVTFGLALSGQITILTGI FYWIAQLLGSIVACFLLKAVTGGLAIPIHSVAAGVGAIQGVVMEIITTFALVYTVYAT AADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGDFHDNWIYW VGPLIGGGLAGLIYGNVFMQSEHAPLSNDF" gene complement(18776299..18779232) /locus_tag="TCM_028838" /note="dbxref CacaoGD:Thecc1EG028838" mRNA complement(join(18776299..18776466,18776568..18776630, 18776769..18776987,18777404..18777460,18777554..18777664, 18777769..18778015,18779144..18779232)) /locus_tag="TCM_028838" /product="NDH-dependent cyclic electron flow 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017041001" /inference="similar to AA sequence:Phytozome:POPTR_0001s18740.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b027890t1a2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc384t3_C2" mRNA complement(join(18776303..18776466,18776568..18776630, 18776925..18776987,18777404..18777460,18777554..18777664, 18777769..18778015,18779144..18779232)) /locus_tag="TCM_028838" /product="NDH-dependent cyclic electron flow 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017041001" /inference="similar to AA sequence:Phytozome:GSVIVT01017041001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14872t00001" CDS complement(join(18776389..18776466,18776568..18776630, 18776925..18776987,18777404..18777460,18777554..18777664, 18777769..18777981)) /locus_tag="TCM_028838" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="NDH-dependent cyclic electron flow 1 isoform 1" /protein_id="EOY26862.1" /db_xref="Phytozome:GSVIVT01017041001" /db_xref="TAIR:AT3G16250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU21" /translation="MGTLQLNTHGLATLSVPYKFNFTSSSHKALGLSRHLSISRGRIR AVRTVLESESLAREPEEPPAVDFAFVHSVLLPDGTPDVHFRSACGGQKLRDIMLDNNI ELYGPYARPLLNCAGGGTCGTCMVEVVEGKELLTPRTDKEKEKLKRKPKNWRLACQTT VGKPDSRGLLVIQQLPEWKAHEWTYETIAPSEEP" mRNA complement(join(18776605..18776630,18776769..18776840, 18776925..18776987,18777404..18777460,18777554..18777664, 18777769..18778034)) /locus_tag="TCM_028838" /product="NDH-dependent cyclic electron flow 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017041001" /inference="similar to AA sequence:Phytozome:POPTR_0001s18740.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1508t4; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc384t3_C2; inference alignment:Newbler:10:TSA:cgbaB_g14872t00001" CDS complement(join(18776814..18776840,18776925..18776987, 18777404..18777460,18777554..18777664,18777769..18777981)) /locus_tag="TCM_028838" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="NDH-dependent cyclic electron flow 1 isoform 3" /protein_id="EOY26864.1" /db_xref="Phytozome:POPTR_0001s18740.1" /db_xref="TAIR:AT3G16250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU21" /translation="MGTLQLNTHGLATLSVPYKFNFTSSSHKALGLSRHLSISRGRIR AVRTVLESESLAREPEEPPAVDFAFVHSVLLPDGTPDVHFRSACGGQKLRDIMLDNNI ELYGPYARPLLNCAGGGTCGTCMVEVVEGKELLTPRTDKEKEKLKRSIPHDHVV" CDS complement(join(18776907..18776987,18777404..18777460, 18777554..18777664,18777769..18777981)) /locus_tag="TCM_028838" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="NDH-dependent cyclic electron flow 1 isoform 2" /protein_id="EOY26863.1" /db_xref="Phytozome:POPTR_0001s18740.1" /db_xref="TAIR:AT3G16250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU21" /translation="MGTLQLNTHGLATLSVPYKFNFTSSSHKALGLSRHLSISRGRIR AVRTVLESESLAREPEEPPAVDFAFVHSVLLPDGTPDVHFRSACGGQKLRDIMLDNNI ELYGPYARPLLNCAGGGTCGTCMVEVVEGKELLTPRTDKEKEKLKRVYHSL" mobile_element 18778804..18778832 /note="source:scaffold_7_CACTA_0795 2820 2968" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18778833..18778946 /note="source:CACAO_PIF_E119_scaffold_3 1756 1867" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 18779001..18785465 /locus_tag="TCM_028839" /note="dbxref CacaoGD:Thecc1EG028839" mRNA join(18779001..18779945,18780492..18780581, 18781421..18781465,18781561..18781615,18781762..18781805, 18781889..18782281,18782399..18782667,18782758..18782905, 18783005..18783055,18783306..18783709,18783804..18784467, 18784806..18785105,18785248..18785465) /locus_tag="TCM_028839" /product="TRNAse Z4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004552" /inference="similar to AA sequence:Phytozome:GSVIVT01017040001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc534t5" mobile_element complement(18779205..18779353) /note="source:scaffold_1_CACTA_0008 14022 14181" /mobile_element_type="transposon:TIR/CACTA" mRNA join(18779534..18779945,18780492..18780581, 18781421..18781465,18781561..18781615,18781699..18781805, 18781889..18782281,18782399..18782667,18782758..18782905, 18783005..18783055,18783306..18783709,18783804..18784467, 18784806..18785105,18785248..18785368) /locus_tag="TCM_028839" /product="TRNAse Z4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004552" /inference="similar to AA sequence:Phytozome:GSVIVT01017040001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc534t3; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc534t5" CDS join(18779553..18779945,18780492..18780581, 18781421..18781465,18781561..18781615,18781762..18781805, 18781889..18782281,18782399..18782667,18782758..18782905, 18783005..18783055,18783306..18783709,18783804..18784467, 18784806..18785105,18785248..18785295) /locus_tag="TCM_028839" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="TRNAse Z4 isoform 1" /protein_id="EOY26865.1" /db_xref="Phytozome:GSVIVT01017040001" /db_xref="TAIR:AT3G16260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGK5" /translation="MPCISPNLRLLFFPVKPALSLPLFISKPNPKPFSLFTLLASSSP SKRPRSVPYRDSLNLARRRSSTFNERKGRGREVAMEETVEESGGSSSSSFGFNKRRAE GKDKSDRPNKNPQLKERKLNPTNTIAYVQILGTGMDTQDTSPSVLLFFDKQRFIFNAG EGLQRFCTEHKIKLSKIDHIFLSRVCSETAGGLPGLLLTLAGMGEEGYTVKIWGPSDL NFLVGAMKSFIPHAAMVHTQSFGPASTSDDAADMPTPSKVADPIVLVEDEVVKISAIL LQPHCSGQSQIKPGEMSVIYVCELPELMGKFDPKKAAALGLKAGPKYGELQHGKSVKS DSLDIMVHPSDVMDPPVPGPIVFLVDCPTESHVQELLSIECLNGYYTDVSGHLTQGTK PVNCVIHLSPASVVSSPNYQKWMKKFGSAQHIMAGHETKNLEVPILKSSARIAARLNY LCPQFFPAPGFWSLQHLNYKESDAIASREGRASKICESISAENLLKFTLRPYAQLGLD RSHIPTLIGQSEVIDELHSEIPEIADAAQQVRQLWRGLKGSREELTPLNDNRVIVEEP WLAENTLPNCLENIRRDDLEIVLLGTGSSQPSKYRNVSSVYINLFSKGSLLLDCGEGT LGQLKRRYGVDGADTAIRNLKCVWISHIHADHHTGLARVLALRRDLLKGVPHEPLLVI GPRQLKRYLDAYQRLEDLDMQFLDCRSTTEASWDTFESDKESNNDGSSPGSPRHSNVN NESMQDINGTLFARGSRMQSYWRRPGSPVDHSAAYPFLKNLKKVLGEAGLEALVSFPV VHCPQAFGIVLKAAERVNSVGKVIPGWKIVYSGDTRPCPELVDASRGATVLIHEATFE DGLVEEAVARNHSTTKEAIEVGNSAGAYRIVLTHFSQRYPKIPVFDETHMHKTCIAFD MMSINIADLPVLPKVVPYLKLLFRNEMAVDESDDVIDTRGAALATQTAFGFES" mRNA join(18781567..18781615,18781762..18781805, 18781889..18782281,18782399..18782667,18782758..18782905, 18783005..18783055,18783306..18783709,18783804..18784471, 18784806..18785105,18785248..18785368) /locus_tag="TCM_028839" /product="TRNAse Z4 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004552" /inference="similar to AA sequence:Phytozome:GSVIVT01017040001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4168t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc534t5" CDS join(18781785..18781805,18781889..18782281, 18782399..18782667,18782758..18782905,18783005..18783055, 18783306..18783709,18783804..18784467,18784806..18785105, 18785248..18785295) /locus_tag="TCM_028839" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="TRNAse Z4 isoform 2" /protein_id="EOY26866.1" /db_xref="Phytozome:GSVIVT01017040001" /db_xref="TAIR:AT3G16260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGK5" /translation="MGEEGYTVKIWGPSDLNFLVGAMKSFIPHAAMVHTQSFGPASTS DDAADMPTPSKVADPIVLVEDEVVKISAILLQPHCSGQSQIKPGEMSVIYVCELPELM GKFDPKKAAALGLKAGPKYGELQHGKSVKSDSLDIMVHPSDVMDPPVPGPIVFLVDCP TESHVQELLSIECLNGYYTDVSGHLTQGTKPVNCVIHLSPASVVSSPNYQKWMKKFGS AQHIMAGHETKNLEVPILKSSARIAARLNYLCPQFFPAPGFWSLQHLNYKESDAIASR EGRASKICESISAENLLKFTLRPYAQLGLDRSHIPTLIGQSEVIDELHSEIPEIADAA QQVRQLWRGLKGSREELTPLNDNRVIVEEPWLAENTLPNCLENIRRDDLEIVLLGTGS SQPSKYRNVSSVYINLFSKGSLLLDCGEGTLGQLKRRYGVDGADTAIRNLKCVWISHI HADHHTGLARVLALRRDLLKGVPHEPLLVIGPRQLKRYLDAYQRLEDLDMQFLDCRST TEASWDTFESDKESNNDGSSPGSPRHSNVNNESMQDINGTLFARGSRMQSYWRRPGSP VDHSAAYPFLKNLKKVLGEAGLEALVSFPVVHCPQAFGIVLKAAERVNSVGKVIPGWK IVYSGDTRPCPELVDASRGATVLIHEATFEDGLVEEAVARNHSTTKEAIEVGNSAGAY RIVLTHFSQRYPKIPVFDETHMHKTCIAFDMMSINIADLPVLPKVVPYLKLLFRNEMA VDESDDVIDTRGAALATQTAFGFES" CDS join(18781785..18781805,18781889..18782281, 18782399..18782667,18782758..18782905,18783005..18783055, 18783306..18783709,18783804..18784471,18784806..18784816) /locus_tag="TCM_028839" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="TRNAse Z4 isoform 3" /protein_id="EOY26867.1" /db_xref="Phytozome:GSVIVT01017040001" /db_xref="TAIR:AT3G16260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGK5" /translation="MGEEGYTVKIWGPSDLNFLVGAMKSFIPHAAMVHTQSFGPASTS DDAADMPTPSKVADPIVLVEDEVVKISAILLQPHCSGQSQIKPGEMSVIYVCELPELM GKFDPKKAAALGLKAGPKYGELQHGKSVKSDSLDIMVHPSDVMDPPVPGPIVFLVDCP TESHVQELLSIECLNGYYTDVSGHLTQGTKPVNCVIHLSPASVVSSPNYQKWMKKFGS AQHIMAGHETKNLEVPILKSSARIAARLNYLCPQFFPAPGFWSLQHLNYKESDAIASR EGRASKICESISAENLLKFTLRPYAQLGLDRSHIPTLIGQSEVIDELHSEIPEIADAA QQVRQLWRGLKGSREELTPLNDNRVIVEEPWLAENTLPNCLENIRRDDLEIVLLGTGS SQPSKYRNVSSVYINLFSKGSLLLDCGEGTLGQLKRRYGVDGADTAIRNLKCVWISHI HADHHTGLARVLALRRDLLKGVPHEPLLVIGPRQLKRYLDAYQRLEDLDMQFLDCRST TEASWDTFESDKESNNDGSSPGSPRHSNVNNESMQDINGTLFARGSRMQSYWRRPGSP VDHSAAYPFLKNLKKVLGEAGLEALVSFPVVHCPQAFGIVLKAAERVNSVGKVIPGWK IVYSGDTRPCPELVDASRGATVLIHEASNF" mobile_element 18785470..18785548 /note="source:CACAO_PIF_E144_scaffold_10 6009 6093" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 18787288..18791429 /locus_tag="TCM_028840" /note="dbxref CacaoGD:Thecc1EG028840" mRNA join(18787288..18787552,18787918..18788137, 18788897..18789136,18789244..18789387,18789944..18790078, 18790895..18791143,18791238..18791350) /locus_tag="TCM_028840" /product="Methyl esterase 12 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s10600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011516t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s10600.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07035t00001" mRNA join(18787758..18787825,18787918..18788137, 18788897..18789136,18789244..18789387,18789944..18790078, 18790895..18791143,18791238..18791429) /locus_tag="TCM_028840" /product="Methyl esterase 12 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s10600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011516t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s10600.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07748t00001; inference alignment:Newbler:10:TSA:cgbaP2_g07035t00001" CDS join(18787758..18787825,18787918..18788137, 18788897..18789136,18789244..18789387,18789944..18790078, 18790895..18791143,18791238..18791297) /locus_tag="TCM_028840" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011516t1" /codon_start=1 /product="Methyl esterase 12 isoform 2" /protein_id="EOY26869.1" /db_xref="Phytozome:POPTR_0019s10600.1" /db_xref="TAIR:AT4G09900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940H7" /translation="MRLSIYQKPLLSCTISGLSFAFLKKKDTKDNGSRSKRVGRSQRK MLAEEEFLHRQALSMALHQHQLSQRFDGSMSRRIGTTSSRRHSDPLANNEKKVLESLE NVKFKRIILIHGEGFGAWCWYKTIAQLEEVGLQPTALDLTGSGIDLTDTNTVTTLAEY SKPLIQYLENLPEDEKVILVGHSSGGACLSYALEHFPEKISKAIFLCATMVSNGQRPF DVFAEELGSAERFMQESQFLIHGNGKDKPPTGFMFENQLMKGLYFNQSPTKDVALAMV SMRPTPLGPIMEKLSLSPEKYGTGRRFYIQTLDDRALSPDVQEKLVRENPPAGVFKIK GSDHCPFFSKPQSLHKILTTGGWSLHSCDRPFLYVEH" CDS join(18787982..18788137,18788897..18789136, 18789244..18789387,18789944..18790078,18790895..18791143, 18791238..18791297) /locus_tag="TCM_028840" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011516t1" /codon_start=1 /product="Methyl esterase 12 isoform 1" /protein_id="EOY26868.1" /db_xref="Phytozome:POPTR_0019s10600.1" /db_xref="TAIR:AT4G09900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940H7" /translation="MLAEEEFLHRQALSMALHQHQLSQRFDGSMSRRIGTTSSRRHSD PLANNEKKVLESLENVKFKRIILIHGEGFGAWCWYKTIAQLEEVGLQPTALDLTGSGI DLTDTNTVTTLAEYSKPLIQYLENLPEDEKVILVGHSSGGACLSYALEHFPEKISKAI FLCATMVSNGQRPFDVFAEELGSAERFMQESQFLIHGNGKDKPPTGFMFENQLMKGLY FNQSPTKDVALAMVSMRPTPLGPIMEKLSLSPEKYGTGRRFYIQTLDDRALSPDVQEK LVRENPPAGVFKIKGSDHCPFFSKPQSLHKILTTGGWSLHSCDRPFLYVEH" mobile_element 18788926..18788967 /note="source:CACAO_M_S_E15347_F33_scaffold_2 10104 10146" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18791650..18805139) /locus_tag="TCM_028841" /note="dbxref CacaoGD:Thecc1EG028841" mRNA complement(join(18791650..18792127,18792405..18792504, 18793121..18793175,18793261..18793379,18793497..18793556, 18793676..18793837,18793946..18794186,18794361..18794461, 18795547..18795670,18797255..18797350,18798280..18798359, 18798460..18798558,18798682..18798777,18798983..18799089, 18799734..18800080)) /locus_tag="TCM_028841" /product="Smg-4/UPF3 family protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene25065" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006150t1" /inference="similar to AA sequence:frave:gene25065" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b027893t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4279t4" mRNA complement(join(18791650..18792127,18793121..18793177, 18793261..18793379,18793497..18793556,18793676..18793837, 18793946..18794186,18794361..18794461,18795547..18795670, 18797255..18797350,18798280..18798359,18798460..18798558, 18798682..18798777,18798983..18799089,18799734..18800080)) /locus_tag="TCM_028841" /product="Smg-4/UPF3 family protein, putative isoform 5" /inference="alignment:exonerate-protein:2:frave:gene25065" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006150t1" /inference="similar to AA sequence:frave:gene25065" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4279t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4279t4" mRNA complement(join(18791650..18792127,18793121..18793379, 18793495..18793556,18793676..18793837,18793946..18794186, 18794361..18794461,18795547..18795670,18797255..18797350, 18798280..18798359,18798460..18798558,18798682..18798777, 18798983..18799089,18799734..18800080)) /locus_tag="TCM_028841" /product="Smg-4/UPF3 family protein, putative isoform 6" /inference="alignment:exonerate-protein:2:frave:gene25065" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006150t1" /inference="similar to AA sequence:frave:gene25065" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4279t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4279t4" mRNA complement(join(18791650..18792127,18792405..18792504, 18793121..18793175,18793261..18793379,18793497..18793556, 18793676..18794186,18794361..18794461,18795547..18795670, 18797255..18797350,18798280..18798359,18798460..18798558, 18798682..18798777,18798983..18799089,18799734..18800080)) /locus_tag="TCM_028841" /product="Smg-4/UPF3 family protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene25065" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006150t1" /inference="similar to AA sequence:frave:gene25065" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b027893t1a4; alternateUTRof:Thecc1EG028841t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4279t4" mRNA complement(join(18791650..18792127,18792359..18792504, 18793121..18793175,18793261..18793379,18793497..18793556, 18793676..18794186,18794361..18794461,18795547..18795670, 18797255..18797350,18798280..18798359,18798460..18798558, 18798682..18798777,18798983..18799089,18799734..18800080)) /locus_tag="TCM_028841" /product="Smg-4/UPF3 family protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene25065" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006150t1" /inference="similar to AA sequence:frave:gene25065" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4279t3; alternateUTRof:Thecc1EG028841t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4279t4" mRNA complement(join(18791751..18792127,18793121..18793175, 18793261..18793379,18793497..18793556,18793676..18794186, 18794361..18794461,18795547..18795670,18797255..18797350, 18798280..18798359,18798460..18798558,18798682..18798777, 18798983..18799089,18799734..18800012,18804979..18805139)) /locus_tag="TCM_028841" /product="Smg-4/UPF3 family protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene25065" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006150t1" /inference="similar to AA sequence:frave:gene25065" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4279t4" mobile_element 18792318..18792471 /note="source:CACAO_Helitron_S_E45_scaffold_6 1 154" /mobile_element_type="transposon:Helitron" CDS complement(join(18793124..18793177,18793261..18793379, 18793497..18793556,18793676..18793837,18793946..18794186, 18794361..18794461,18795547..18795670,18797255..18797350, 18798280..18798359,18798460..18798558,18798682..18798777, 18798983..18799089,18799734..18799873)) /locus_tag="TCM_028841" /note="encoded by transcript variant 5; alternatively spliced; dbxref frave:gene25065; paralog of Thecc1EG006150t1" /codon_start=1 /product="Smg-4/UPF3 family protein, putative isoform 5" /protein_id="EOY26874.1" /db_xref="TAIR:AT1G33980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0F2" /translation="MKEPLRRTKVVIRHLPPSVTQSFLFSQIDDRFSDRYNWFSFRLG KSSHKHQRYSRAYINFKRPEDVFEFAEFFDGHVFVNEKGTQFKAIVEYAPSQRVPKPG TKKDGREGTIFKDPDYLEFLKLIAKPVDNLPSAEIQLERKEVELSGAPKETPVITPLM AFVRQKRAAESGTQGPVTRRKIGRKAGAASTGKSGSSSKRGSEKKKYILKDSVKGTHH KDKSKFFVASKQEDQPVPSVGKEKRENGTVYGIDGPVTGITLTADSGKKKILLLKPKD QEAPHVPQGASEQQGSSSPVANSPGSTAPKQSQRREAGGRLIRSILLSNEASQNQPLA GVKPQQKTQTMNLDNVKRPPRPANTRLGSGSEKHEKRIRNKDRLDRGVWAPLRGSDVS QASEERFSPSMSQSAQASSNSIEGEMKGDIPNGRSGRNVPSENGSNRHFDRRSAAYNI KDDGSVISSESKSSKRGATGSGAHERNKFGFRSHLQVLRKST" CDS complement(join(18793137..18793175,18793261..18793379, 18793497..18793556,18793676..18793837,18793946..18794186, 18794361..18794461,18795547..18795670,18797255..18797350, 18798280..18798359,18798460..18798558,18798682..18798777, 18798983..18799089,18799734..18799873)) /locus_tag="TCM_028841" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene25065; paralog of Thecc1EG006150t1" /codon_start=1 /product="Smg-4/UPF3 family protein, putative isoform 2" /protein_id="EOY26871.1" /db_xref="TAIR:AT1G33980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N0F2" /translation="MKEPLRRTKVVIRHLPPSVTQSFLFSQIDDRFSDRYNWFSFRLG KSSHKHQRYSRAYINFKRPEDVFEFAEFFDGHVFVNEKGTQFKAIVEYAPSQRVPKPG TKKDGREGTIFKDPDYLEFLKLIAKPVDNLPSAEIQLERKEVELSGAPKETPVITPLM AFVRQKRAAESGTQGPVTRRKIGRKAGAASTGKSGSSSKRGSEKKKYILKDSVKGTHH KDKSKFFVASKQEDQPVPSVGKEKRENGTVYGIDGPVTGITLTADSGKKKILLLKPKD QEAPHVPQGASEQQGSSSPVANSPGSTAPKQSQRREAGGRLIRSILLSNEASQNQPLA GVKPQQKTQTMNLDNVKRPPRPANTRLGSGSEKHEKRIRNKDRLDRGVWAPLRGSDVS QASEERFSPSMSQSAQASSNSIEGEMKGDIPNGRSGRNVPSENGSNRHFDRRSAAYNI KDDGSVISSESKSSKRGATGSGAHEKQIWVQKSSSGS" CDS complement(join(18793137..18793175,18793261..18793379, 18793497..18793556,18793676..18794186,18794361..18794461, 18795547..18795670,18797255..18797350,18798280..18798359, 18798460..18798558,18798682..18798777,18798983..18799089, 18799734..18799873)) /locus_tag="TCM_028841" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene25065; paralog of Thecc1EG006150t1" /codon_start=1 /product="Smg-4/UPF3 family protein, putative isoform 1" /protein_id="EOY26870.1" /db_xref="TAIR:AT1G33980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IQD6" /translation="MKEPLRRTKVVIRHLPPSVTQSFLFSQIDDRFSDRYNWFSFRLG KSSHKHQRYSRAYINFKRPEDVFEFAEFFDGHVFVNEKGTQFKAIVEYAPSQRVPKPG TKKDGREGTIFKDPDYLEFLKLIAKPVDNLPSAEIQLERKEVELSGAPKETPVITPLM AFVRQKRAAESGTQGPVTRRKIGRKAGAASTGKSGSSSKRGSEKKKYILKDSVKGTHH KDKSKFFVASKQEDQPVPSVGKEKRENGTVYGIDGPVTGITLTADSGKKKILLLKPKD QEAPHVPQGASEQQGSSSPVANSPGSTAPKQSQRREAGGRLIRSILLSNEASQNQPLA GVKPQQKTQTMNLDNVKRPPRPANTRLGMHGHASNNEIPALKSDGDKKGASNDKFIKK GLYGSGSGSEKHEKRIRNKDRLDRGVWAPLRGSDVSQASEERFSPSMSQSAQASSNSI EGEMKGDIPNGRSGRNVPSENGSNRHFDRRSAAYNIKDDGSVISSESKSSKRGATGSG AHEKQIWVQKSSSGS" CDS complement(join(18793137..18793175,18793261..18793379, 18793497..18793556,18793676..18794186,18794361..18794461, 18795547..18795670,18797255..18797350,18798280..18798359, 18798460..18798558,18798682..18798777,18798983..18799089, 18799734..18799873)) /locus_tag="TCM_028841" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene25065; paralog of Thecc1EG006150t1" /codon_start=1 /product="Smg-4/UPF3 family protein, putative isoform 1" /protein_id="EOY26872.1" /db_xref="TAIR:AT1G33980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IQD6" /translation="MKEPLRRTKVVIRHLPPSVTQSFLFSQIDDRFSDRYNWFSFRLG KSSHKHQRYSRAYINFKRPEDVFEFAEFFDGHVFVNEKGTQFKAIVEYAPSQRVPKPG TKKDGREGTIFKDPDYLEFLKLIAKPVDNLPSAEIQLERKEVELSGAPKETPVITPLM AFVRQKRAAESGTQGPVTRRKIGRKAGAASTGKSGSSSKRGSEKKKYILKDSVKGTHH KDKSKFFVASKQEDQPVPSVGKEKRENGTVYGIDGPVTGITLTADSGKKKILLLKPKD QEAPHVPQGASEQQGSSSPVANSPGSTAPKQSQRREAGGRLIRSILLSNEASQNQPLA GVKPQQKTQTMNLDNVKRPPRPANTRLGMHGHASNNEIPALKSDGDKKGASNDKFIKK GLYGSGSGSEKHEKRIRNKDRLDRGVWAPLRGSDVSQASEERFSPSMSQSAQASSNSI EGEMKGDIPNGRSGRNVPSENGSNRHFDRRSAAYNIKDDGSVISSESKSSKRGATGSG AHEKQIWVQKSSSGS" CDS complement(join(18793137..18793175,18793261..18793379, 18793497..18793556,18793676..18794186,18794361..18794461, 18795547..18795670,18797255..18797350,18798280..18798359, 18798460..18798558,18798682..18798777,18798983..18799089, 18799734..18799873)) /locus_tag="TCM_028841" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene25065; paralog of Thecc1EG006150t1" /codon_start=1 /product="Smg-4/UPF3 family protein, putative isoform 1" /protein_id="EOY26873.1" /db_xref="TAIR:AT1G33980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IQD6" /translation="MKEPLRRTKVVIRHLPPSVTQSFLFSQIDDRFSDRYNWFSFRLG KSSHKHQRYSRAYINFKRPEDVFEFAEFFDGHVFVNEKGTQFKAIVEYAPSQRVPKPG TKKDGREGTIFKDPDYLEFLKLIAKPVDNLPSAEIQLERKEVELSGAPKETPVITPLM AFVRQKRAAESGTQGPVTRRKIGRKAGAASTGKSGSSSKRGSEKKKYILKDSVKGTHH KDKSKFFVASKQEDQPVPSVGKEKRENGTVYGIDGPVTGITLTADSGKKKILLLKPKD QEAPHVPQGASEQQGSSSPVANSPGSTAPKQSQRREAGGRLIRSILLSNEASQNQPLA GVKPQQKTQTMNLDNVKRPPRPANTRLGMHGHASNNEIPALKSDGDKKGASNDKFIKK GLYGSGSGSEKHEKRIRNKDRLDRGVWAPLRGSDVSQASEERFSPSMSQSAQASSNSI EGEMKGDIPNGRSGRNVPSENGSNRHFDRRSAAYNIKDDGSVISSESKSSKRGATGSG AHEKQIWVQKSSSGS" CDS complement(join(18793335..18793379,18793495..18793556, 18793676..18793837,18793946..18794186,18794361..18794461, 18795547..18795670,18797255..18797350,18798280..18798359, 18798460..18798558,18798682..18798777,18798983..18799089, 18799734..18799873)) /locus_tag="TCM_028841" /note="encoded by transcript variant 6; alternatively spliced; dbxref frave:gene25065; paralog of Thecc1EG006150t1" /codon_start=1 /product="Smg-4/UPF3 family protein, putative isoform 6" /protein_id="EOY26875.1" /db_xref="TAIR:AT1G33980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FX10" /translation="MKEPLRRTKVVIRHLPPSVTQSFLFSQIDDRFSDRYNWFSFRLG KSSHKHQRYSRAYINFKRPEDVFEFAEFFDGHVFVNEKGTQFKAIVEYAPSQRVPKPG TKKDGREGTIFKDPDYLEFLKLIAKPVDNLPSAEIQLERKEVELSGAPKETPVITPLM AFVRQKRAAESGTQGPVTRRKIGRKAGAASTGKSGSSSKRGSEKKKYILKDSVKGTHH KDKSKFFVASKQEDQPVPSVGKEKRENGTVYGIDGPVTGITLTADSGKKKILLLKPKD QEAPHVPQGASEQQGSSSPVANSPGSTAPKQSQRREAGGRLIRSILLSNEASQNQPLA GVKPQQKTQTMNLDNVKRPPRPANTRLGSGSEKHEKRIRNKDRLDRGVWAPLRGSDVS QASEERFSPSMSQSAQASSNSIEGEMKGDIPNGRSGRNVPSENGVQIDILIGAQQPII " mobile_element complement(18800073..18800258) /note="source:CACAO_MITE_S202_scaffold_8 393 590" /mobile_element_type="transposon:TIR/MITE" mobile_element 18800106..18800339 /note="source:scaffold_4_CACTA_0482 4545 4804" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18800774..18801548) /note="source:CACAO_Again_on_S_E38_scaffold_1 2 787" /mobile_element_type="transposon:TIR/hAT" mobile_element 18801695..18801805 /note="source:INTACT446_F218_scaffold_9-int 7173 7281" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(18801728..18803696) /note="source:scaffold_5_CACTA_0615 177 2220" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18805012..18805237) /note="source:scaffold_5_CACTA_0580 4387 4605" /mobile_element_type="transposon:TIR/CACTA" gene 18805242..18810956 /locus_tag="TCM_028843" /note="dbxref CacaoGD:Thecc1EG028843" mRNA join(18805242..18805981,18806377..18807123, 18807370..18807525,18808351..18809316,18810073..18810169, 18810586..18810956) /locus_tag="TCM_028843" /product="VHS domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017039001" /inference="similar to AA sequence:Phytozome:GSVIVT01017039001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4174t1" CDS join(18805775..18805981,18806377..18807123, 18807370..18807525,18808351..18809316,18810073..18810114) /locus_tag="TCM_028843" /codon_start=1 /product="VHS domain-containing protein" /protein_id="EOY26876.1" /db_xref="Phytozome:GSVIVT01017039001" /db_xref="TAIR:AT3G16270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C5H4" /translation="MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSH VSIVKEVSEFILKRLDHKSPIVKQKALRLIKYAVGKSGVEFRREMQRNSVAVRQLFHY KGQPDPLKGDALNKAVRDTAHEAISAIFAEDNNNTKPSPADDLNKRIQGFGNTNFEMP SDDKKSFLSEVVGIGSASIKQGISSFTQGHSLRKNDNGNYKSPTLRRSLTTESDHSDR YEPVELRNDTQGVSKITASGPWGQDSKVLKTETTNGEASSNYSETKTREERLLETIVT SGGVRLQPTRDAIQAFLVEAAKLDALALSHALESKLLSPMWQVRMKAVCVLESILRRK EDEHFLIVASYFTENKDVVLRCSESPQTSLREKANKVLILLNGEQTGGLASNSEKSLK AETTPVQMPDLIDTGGPDDYTGLDNSTKNQHDQNIANLTATPLIDDLFGDGLDAGLST SEQKNDDDPFADVSFHTDEGRENVDDLFSGMTIDDKSVVNGNHAAANIKSELIDIFGT NSEAPFEPENKQNDVNDLMVGLSMNENSSSLKQKGISSEAHPENIFADINTHSSHEAS NDALSGTLGSQAAGMNTNPMFPLGTMPYSFSPGIMLNPAFSSQPMNYGAMGSFFAQQQ LLATMSNLQHLANLNAQNAAINHVSSGSNGGYSSALPDIFQSNFPIQTPSSMMNSSKK EDTRAFDFISDHLAAARDPKRTM" gene complement(18810019..18818553) /locus_tag="TCM_028844" /note="dbxref CacaoGD:Thecc1EG028844" mRNA complement(join(18810019..18811429,18811520..18811579, 18812134..18812304,18812396..18812518,18813519..18813687, 18813795..18813851,18813959..18814182,18814429..18814501, 18814588..18814706,18815120..18815456,18815661..18815819, 18816099..18816190,18816451..18816874,18817703..18818553)) /locus_tag="TCM_028844" /product="LETM1 and EF-hand domain-containing protein anon-60Da isoform 2" /inference="alignment:exonerate-protein:2:frave:gene25761" /inference="similar to AA sequence:ricco:30146.m003538" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:PASA:2:TSA:puevd3b027895t1a2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc649t6" mRNA complement(join(18810969..18811429,18811520..18811579, 18812134..18812304,18812396..18812527,18813519..18813687, 18813795..18813851,18813959..18814182,18814429..18814501, 18814588..18814706,18815120..18815456,18815661..18815819, 18816099..18816190,18816451..18816874,18817703..18818553)) /locus_tag="TCM_028844" /product="LETM1 and EF-hand domain-containing protein anon-60Da isoform 1" /inference="alignment:exonerate-protein:2:frave:gene25761" /inference="similar to AA sequence:ricco:30146.m003538" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc649t6" CDS complement(join(18811322..18811429,18811520..18811579, 18812134..18812304,18812396..18812518,18813519..18813687, 18813795..18813851,18813959..18814182,18814429..18814501, 18814588..18814706,18815120..18815456,18815661..18815819, 18816099..18816190,18816451..18816874,18817703..18818073)) /locus_tag="TCM_028844" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30146.m003538" /codon_start=1 /product="LETM1 and EF-hand domain-containing protein anon-60Da isoform 2" /protein_id="EOY26878.1" /db_xref="TAIR:AT3G11560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RQH6" /translation="MKNQDCGILLPCALNPKRKPAKSIVNVPGLAGAGGLNSDGNGKY HHWFLSENWGFANSRSAELWAIREWPYIHIHNALLVLLNECRCLYGTAECGSSEAHLA GRENNCADKLARSNGDEGDAFGQTFRSYNGWNWKINSSAPHCSKFRGRQQGNNFLAKK SNSLGLWFAGYTFSRVIFQSALSSMSSSPKYCGPTESGDGALVPEPDPPAVEFNRVNC LVWVLHESARSFSLAVESLELAGSSAELAMAWNGKDVHQWHRHIAHRVAVYALLKTAI EVEILLSQERHNNPSPVRKILTPETDLLEEFIETQLKLRHSELVQWFRVVELPRIAGF FIPLLKKWSMEYAGSGVAGIIVAISCCAAVEKLGSDRTSCPLSTMSIGDVLVELMNLS HSIVSVDKLHQLATEAGFELDFLSHFGAKILSSKKSDELEFWIGLALRKLSVAFCKET MIPGKLAIYSKGQADSLATLGLFAYLGRKTRLYLSRMRINDLDELVKDFLSYLECGSL FIYPEFSSISVYQFFMEVVTDEIGWLDFYDTTRCISNQEKRRSKQHTIQAEKEIILSQ VFTVCYDVFSGFAHFSRSAQQPLNSELLAFLLRSQSLLTICLEDYWAAYDRSGEPLKI TESGASRHTPSTGATGTTQLAVVMEAQEELTGLMTEECQNDESEHEHMLKKTSSSAST DAITCGEGIDIPKSNSPNESLIRKYSIKLISSSFDVWLGTQLLFIDITVSLELLLKRL RGQKVTARDKRKLQRTLNDIATLIPVTILMLLPVSAVGHAAMLAAINKYIPSLIPSPF SSERLDVAKQLKRTKKMEVKSWSNLEGTNL" CDS complement(join(18811322..18811429,18811520..18811579, 18812134..18812304,18812396..18812527,18813519..18813687, 18813795..18813851,18813959..18814182,18814429..18814501, 18814588..18814706,18815120..18815456,18815661..18815819, 18816099..18816190,18816451..18816874,18817703..18818073)) /locus_tag="TCM_028844" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30146.m003538" /codon_start=1 /product="LETM1 and EF-hand domain-containing protein anon-60Da isoform 1" /protein_id="EOY26877.1" /db_xref="TAIR:AT3G11560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RQH6" /translation="MKNQDCGILLPCALNPKRKPAKSIVNVPGLAGAGGLNSDGNGKY HHWFLSENWGFANSRSAELWAIREWPYIHIHNALLVLLNECRCLYGTAECGSSEAHLA GRENNCADKLARSNGDEGDAFGQTFRSYNGWNWKINSSAPHCSKFRGRQQGNNFLAKK SNSLGLWFAGYTFSRVIFQSALSSMSSSPKYCGPTESGDGALVPEPDPPAVEFNRVNC LVWVLHESARSFSLAVESLELAGSSAELAMAWNGKDVHQWHRHIAHRVAVYALLKTAI EVEILLSQERHNNPSPVRKILTPETDLLEEFIETQLKLRHSELVQWFRVVELPRIAGF FIPLLKKWSMEYAGSGVAGIIVAISCCAAVEKLGSDRTSCPLSTMSIGDVLVELMNLS HSIVSVDKLHQLATEAGFELDFLSHFGAKILSSKKSDELEFWIGLALRKLSVAFCKET MIPGKLAIYSKGQADSLATLGLFAYLGRKTRLYLSRMRINDLDELVKDFLSYLECGSL FIYPEFSSISVYQFFMEVVTDEIGWLDFYDTTRCISNQEKRRSKQHTIQAEKEIILSQ VFTVCYDVFSGFAHFSRSAQQPLNSELLAFLLRSQSLLTICLEDYWAAYDRSGEPLKI TESGASRHTPSTGATGTTQLAVVMEAQEELTGLMTEECQNDESEHEHMLKKLLQTSSS ASTDAITCGEGIDIPKSNSPNESLIRKYSIKLISSSFDVWLGTQLLFIDITVSLELLL KRLRGQKVTARDKRKLQRTLNDIATLIPVTILMLLPVSAVGHAAMLAAINKYIPSLIP SPFSSERLDVAKQLKRTKKMEVKSWSNLEGTNL" gene complement(18818969..18821005) /locus_tag="TCM_028845" /note="dbxref CacaoGD:Thecc1EG028845" mRNA complement(join(18818969..18819240,18819487..18819677, 18820171..18820268,18820380..18820468,18820593..18820664, 18820877..18820997)) /locus_tag="TCM_028845" /product="Cytochrome c oxidase 19-1 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene25761" /inference="similar to AA sequence:Phytozome:POPTR_0001s18780.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc889t8" mRNA complement(join(18819329..18819677,18820171..18820268, 18820380..18820468,18820877..18821005)) /locus_tag="TCM_028845" /product="Cytochrome c oxidase 19-1 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene25761" /inference="similar to AA sequence:Phytozome:POPTR_0001s18780.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00817t00003; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc889t8" CDS complement(join(18819578..18819677,18820171..18820268, 18820380..18820468,18820877..18820886)) /locus_tag="TCM_028845" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cytochrome c oxidase 19-1 isoform 2" /protein_id="EOY26880.1" /db_xref="Phytozome:POPTR_0001s18780.1" /db_xref="TAIR:AT1G66590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9L6" /translation="MSAGGAFGGNRGLSPVPPEKGIFPLDHLHECDLEKKEYLNCLKT SGHKSDKCRQFSKKYLQCRMEKNLMAKQDLSELGFGKQSEMEASGEKNTQTIDN" CDS complement(join(18819578..18819677,18820171..18820268, 18820380..18820468,18820593..18820664,18820877..18820886)) /locus_tag="TCM_028845" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cytochrome c oxidase 19-1 isoform 1" /protein_id="EOY26879.1" /db_xref="Phytozome:POPTR_0001s18780.1" /db_xref="TAIR:AT1G66590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9L6" /translation="MSAALYFLRFNWKFISCLINVLGRCWFCGAFGGNRGLSPVPPEK GIFPLDHLHECDLEKKEYLNCLKTSGHKSDKCRQFSKKYLQCRMEKNLMAKQDLSELG FGKQSEMEASGEKNTQTIDN" gene complement(18821250..18825250) /locus_tag="TCM_028846" /note="dbxref CacaoGD:Thecc1EG028846" mRNA complement(join(18821250..18821620,18821874..18821930, 18822281..18822377,18822551..18822642,18822745..18822790, 18822877..18823031,18823142..18823370,18823984..18824060, 18824695..18825250)) /locus_tag="TCM_028846" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G52155.1" /inference="similar to AA sequence:Phytozome:GSVIVT01017035001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4120t4" CDS complement(join(18821504..18821620,18821874..18821930, 18822281..18822377,18822551..18822642,18822745..18822790, 18822877..18823031,18823142..18823370,18823984..18824060, 18824695..18824844)) /locus_tag="TCM_028846" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26881.1" /db_xref="Phytozome:GSVIVT01017035001" /db_xref="TAIR:AT1G52155.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IBA7" /translation="MNVSEIGESNPVGLDESYRPLPSLYLGFLSIWFFSACSWTFNTY KNRHFQTNNLQWTLASVPLIKAFQLTLSFLFWYSCFYLQVCSLWMSFGVYVTGVLFQT ASFVSFMLISHGYCITCERLSVTERRTTAALGCVFYLTLVGYRASVPYFTVLLLLNYI ISFYVIFHHISRNLVVLREQLTFIEDEDVQSMRDAVYAKYKMFKKFQGAMLIVAMAET VIYLNMDDFSENYWLRLLVREWAQFCIFMYIGWTFRSQELATHFSVMPTLKSIVDSMV PPIYRIEMDATTFREFTSHEWHIGVPTSVRDKSPRDSVLVIIQHPHAFRPTSGAAPSS RKQPA" mobile_element complement(18826421..18826524) /note="source:CACAO_PIF_E119_scaffold_3 2159 2263" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(18829047..18829069) /note="source:CACAO_M_E58877_F5_scaffold_9 20747 20759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18829070..18829648 /note="source:INTACT666_F293_scaffold_9-int 1 582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18830433..18831850 /note="source:CACAO_M_E44210_F112_scaffold_5 11202 12465" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18830518..18832286 /note="source:INTACT157_F155_scaffold_1-int 12891 14525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18834099..18834178) /note="source:scaffold_5_CACTA_0607 8666 8745" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18835453..18835487) /note="source:CACAO_M_E14113_F106_scaffold_3 17298 17332" /mobile_element_type="retrotransposon:LTR/Copia" gene 18837847..18841134 /locus_tag="TCM_028848" /note="dbxref CacaoGD:Thecc1EG028848" mRNA join(18837847..18837855,18838827..18839472, 18839662..18839822,18840377..18841134) /locus_tag="TCM_028848" /product="Pyridoxal phosphate (PLP)-dependent transferases superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s12240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018643t2" /inference="similar to AA sequence:ricco:29635.m000441" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.55 coverage" gene 18838038..18839650 /locus_tag="TCM_028849" /note="dbxref CacaoGD:Thecc1EG028849" mRNA join(18838038..18838181,18838827..18839650) /locus_tag="TCM_028849" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s12240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018643t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400014873" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage" CDS join(18838120..18838181,18838827..18839271) /locus_tag="TCM_028849" /note="paralog of Thecc1EG018643t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26883.1" /db_xref="Phytozome:PGSC0003DMP400014873" /translation="MEGKILWKMLLKNYVECLGLMQQARVRSSRRVTTASFCIGGIDD EGLSSLIFRFSPKFVRQLSIKACPNCSNIGVPQIVAASWSNSPASSSPSSAVAAAQAT AATTVHISDDVAVVQGCNDNGSVLSGGSDNSTTFFLSSDRTITVHAIDRLGWGIVIVA ITTPVINT" CDS join(18839409..18839472,18839662..18839822, 18840377..18840952) /locus_tag="TCM_028848" /note="dbxref ricco:29635.m000441; paralog of Thecc1EG018643t2" /codon_start=1 /product="Pyridoxal phosphate (PLP)-dependent transferases superfamily protein, putative" /protein_id="EOY26882.1" /db_xref="TAIR:AT3G01120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P55217" /translation="MECALAQSSHADGIGSCWWAYEKVSKLCHSKGVLVCIDGTFAIP LNQKVLALGADLVLHYVIKFIGGHNDILAGCRHEDIASSCTTTEFNNIKDGKVLEAHP WVKRFYHPGLPSHSEHEIAKQQMTGFGGVVSFEVDRDLMTTIKFVDAFKIPNIAPSLG GCESIADQPTIMSYWDLTQAERRKYGIEDNLVRFSFGVEDFKDLKADILQAPRNHIKA SIAFLIFIFKIFDCSLQTFWSGLVILVFQLALISKVSVVFQLGSSLLE" mobile_element 18841794..18859961 /note="source:CACAO_M_E49205_F4_scaffold_6 1 18168" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18860030..18860094) /note="source:CACAO_M_S_E16543_F3_scaffold_2 4776 4838" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18862994..18864061 /locus_tag="TCM_028851" /note="dbxref CacaoGD:Thecc1EG028851" mRNA 18862994..18864061 /locus_tag="TCM_028851" /product="Integrase-type DNA-binding superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30146.m003535" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037194t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s18800.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1176t1" CDS 18863049..18863768 /locus_tag="TCM_028851" /note="paralog of Thecc1EG037194t1" /codon_start=1 /product="Integrase-type DNA-binding superfamily protein" /protein_id="EOY26884.1" /db_xref="Phytozome:POPTR_0001s18800.1" /db_xref="TAIR:AT5G25810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYD3" /translation="MTETNHSSSEVESCSSNNSNSSASSSSQTRQNLPRKSNPAQSPE DSRAKKPRDSSSKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDV AALSIKGDSAILNFPELAELLPRPVSLMPRDIQAAAAKAASMVNFDTLSSSSSSSPES SSLSESNASEEPEELGEIVQLPNIEGNFDSLFDSRNEFILLDSVDGWAYPPQDFYGGF CDQIWATENLIPGSFGTSMWE" mobile_element complement(18864679..18864729) /note="source:CACAO_M_E14113_F106_scaffold_3 13813 13863" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18866753..18866824 /note="source:scaffold_5_CACTA_0584 1913 1986" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18866760..18866825) /note="source:CACAO_M_E14113_F106_scaffold_3 13788 13856" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18868926..18869226) /note="source:CACAO_hAT_E2982_scaffold_7 735 1033" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(18869220..18869518) /note="source:CACAO_hAT_E410_scaffold_1 126 446" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(18869630..18869701) /note="source:CACAO_Again_on_E100_scaffold_4 103 173" /mobile_element_type="transposon:TIR/hAT" mobile_element 18875579..18875966 /note="source:CACAO_on_E576_scaffold_5 1 401" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(18877908..18884153) /locus_tag="TCM_028852" /note="dbxref CacaoGD:Thecc1EG028852" mRNA complement(join(18877908..18878345,18878449..18878572, 18879419..18879511,18879601..18879693,18879790..18879894, 18880025..18880096,18880200..18880277,18880365..18880534, 18880622..18880856,18880979..18881221,18881358..18881453, 18881556..18881693,18882078..18882203,18882286..18882539, 18883668..18884153)) /locus_tag="TCM_028852" /product="TCP-1/cpn60 chaperonin family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400041521" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039855t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017032001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09022t00001" CDS complement(join(18878332..18878345,18878449..18878572, 18879419..18879511,18879601..18879693,18879790..18879894, 18880025..18880096,18880200..18880277,18880365..18880534, 18880622..18880856,18880979..18881221,18881358..18881453, 18881556..18881693,18882078..18882203,18882286..18882525)) /locus_tag="TCM_028852" /note="paralog of Thecc1EG039855t1" /codon_start=1 /product="TCP-1/cpn60 chaperonin family protein" /protein_id="EOY26885.1" /db_xref="Phytozome:GSVIVT01017032001" /db_xref="TAIR:AT3G13470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P21240" /translation="MTSSFNALLYSSPAFPCSRTMDKKFLSSSGRLSSFDSISSSAIV GRKQNVILRRGHSSKIWAMAKELHFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVV LESKFGSPKIVNDGVTVAKEVELEHPVENIGARLVRQAASKTNDLAGDGTTTSVVLAQ GLITEGVKVVAAGANPVQITKGIESTTKALVSELKMMSKEVEDSELADVAAVSAGNNY EVGNMIAEAMGKVGRKGIVTLEEGSGSENSMYVVEGMQFDRGYISPYFVTDSEKMAVE CENCKLLLVDKKITNARDLIHVLEDAIKEGYPIVIIAEDIEQEALATLVVNKLRGSLK IAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLSLDKAEKEVLGQAAKVVLTKETT TIVGDGSTQEAVNKRVAQIKNLVEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETE LKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAAKVDAVRETLDNDEQKVGADIVK RALSYPMKLIAKNAGVNGSVVIEKVLSSDNPNYGYNAATGKYEDLMAAGIIDPTKVVR CCLEHAASVARTFLTSDAVVVDIKEPETAAAGNPMDNSGYGY" mobile_element complement(18886372..18886442) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3863 3934" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18886959..18888093 /locus_tag="TCM_028854" /note="dbxref CacaoGD:Thecc1EG028854" mRNA 18886959..18888093 /locus_tag="TCM_028854" /product="Ankyrin repeat family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028855t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017031001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1981t1" CDS 18887128..18888048 /locus_tag="TCM_028854" /note="paralog of Thecc1EG028855t1" /codon_start=1 /product="Ankyrin repeat family protein" /protein_id="EOY26886.1" /db_xref="Phytozome:GSVIVT01017031001" /db_xref="TAIR:AT2G24600.4" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HYC4" /translation="MVLPTQWHQRKHLSKSCGHLSALSTIEASRKDLHEHGYGEKSNV QEEGELSEPESSKEEQDKLRNLWQLKCASERHRKELSKLHRSRQHKQYEMHREAALNA RNTIILVAILIATVTFAAGINPPGGVYQEGPLKGKSTVGRTKAFKVFMISNYIALFTS LGIVVALVSIIPFQRKQLMRLILITHKLLWVSLSFTTTAFISGTCVVMPQGRDGGWIV EFLLAASVGSLGILFIYLGVALSRHRRRKLRWREEKDKKKETVVDAAIEGKNRSQYSI FDSRSENQSELSQSTNSDVDSSTSLGYHAY" gene 18888973..18898288 /locus_tag="TCM_028855" /note="dbxref CacaoGD:Thecc1EG028855" mRNA join(18888973..18889066,18895046..18895525, 18895686..18895885,18896013..18896074,18896421..18898288) /locus_tag="TCM_028855" /product="Ankyrin repeat family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g02150.1.2" /inference="similar to AA sequence:frave:gene25629" /note="quality class is medium, express is weak, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4140t1" mobile_element 18889356..18889404 /note="source:CACAO_M_E27_F84_scaffold_1 466 514" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18889411..18889500 /note="source:CACAO_M_E27_F84_scaffold_1 412 501" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18889532..18890256 /note="source:CACAO_on_E614_scaffold_6 1 725" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 18893308..18894298 /note="source:CACAO_on_E614_scaffold_6 726 1716" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(18894400..18894698) /note="source:INTACT746_F84_scaffold_2-int 2 325" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(18895075..18895525,18895686..18895885, 18896013..18896074,18896421..18897435) /locus_tag="TCM_028855" /note="dbxref frave:gene25629" /codon_start=1 /product="Ankyrin repeat family protein, putative" /protein_id="EOY26887.1" /db_xref="TAIR:AT1G10340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HYC4" /translation="MDPRLLEAIAGNDALALTSLVRENEGILEQRTTNSLNTALHLAL RFGSNNLVMEIIKLQPNLVATENRKLETPLHEACRAGNAEAVMLLLESNPWIACNLNC ENQSPLFIACSNGRLNLIKLLLNQPWLQGLEDDADLTCAHEAASKGHIEKMREILKIF PDMGRKVDRNGRSPLHYACSKGHLDITKMLLKHDLDLAFQFDNNGYTPLHLAAMNDDW FSVRPISSTDQTRMGTQSCIGHTVLDILNQAGYTSEIQLLKESIKRAGDRTGIAFPEI QSPREALEQQFELLLETGSQHEYAHDNRVPELLPRSVMATNSRVNLLPRQAHEKPEIE NADSLQCESSQRTKRSPPISMRQCRRHSRRNRQDMIEFYKYGQHKQHNAYKEALQNAR NTITIVAVLIATVTFSAGISPPGGVYQEGLLKGKSMVGRTIAFKVFVISNNIALFTSL SIVIFLVSIIPFQRKPLMRFLIIAHKVMWLAVSFMTKAFVAATCIIVPHGHGNGWLRE ASAAIGAGSVVLAFICLGVMLARHMVRKVKWRKEKGERKETNNESKSHSHSSNSDQES AKYLGYHAY" gene complement(18898551..18899639) /locus_tag="TCM_028856" /note="dbxref CacaoGD:Thecc1EG028856" mRNA complement(join(18898551..18899162,18899350..18899639)) /locus_tag="TCM_028856" /product="Early nodulin-like protein 7, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18820.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s18820.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1166t1" CDS complement(join(18898828..18899162,18899350..18899581)) /locus_tag="TCM_028856" /codon_start=1 /product="Early nodulin-like protein 7, putative" /protein_id="EOY26888.1" /db_xref="Phytozome:POPTR_0001s18820.1" /db_xref="TAIR:AT1G79800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U0E6" /translation="MKSEARNTKMNNSSMEPFRGLVCTCFLILAAMNIGSVEASKGFK VGDHIGWQQPSANNTAVYSQWARSKRFHVGDSLSFEYQNDSVLVVEKWDYFHCNTNKP ISSFNDGKTVINLDRPGLFYFLSGAVDHCKKGQKLLIRVMGLHQRAESPPSGVDIAPG PHPSSGLVVTVTLSSVFVALTVTVVTLV" gene complement(18899698..18908249) /locus_tag="TCM_028857" /note="dbxref CacaoGD:Thecc1EG028857" mRNA complement(join(18899698..18900275,18900368..18900424, 18900794..18900916,18901853..18901931,18902205..18902290, 18903108..18903266,18903578..18903718,18903855..18904019, 18904154..18904255,18904482..18904654,18905917..18907770, 18908157..18908249)) /locus_tag="TCM_028857" /product="Cell division protein ftsH, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04910.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s04910.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04209t00001" CDS complement(join(18900060..18900275,18900368..18900424, 18900794..18900916,18901853..18901931,18902205..18902290, 18903108..18903266,18903578..18903718,18903855..18904019, 18904154..18904255,18904482..18904654,18905917..18907249)) /locus_tag="TCM_028857" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cell division protein ftsH, putative isoform 1" /protein_id="EOY26889.1" /db_xref="Phytozome:POPTR_0003s04910.1" /db_xref="TAIR:AT3G16290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RQG8" /translation="MACHFSFGSSLYPELPSLKLKSQNPFFSTTYPSISCQIYSFKSN NSDDDDKTKKSQFNFLALPITLTIISTSFPQKSSLAAVKVSDRKKTQKKTQEALTPEQ LKQWSKDLPIVKSRIPYTEILSLKLEGKLKHLIKPPSVSLKQRAEPVLVVLEDSRVLR TVLPSIDSDRKFWDSWDELKIESLCVNAYTPPIKRPEVPAPYLGFLGRVPASMLSWFK PKKESKRAAEIRRAREEFKRQRKEELARMREEREMIEKAIKVQKKEEVRRKKQEIRKR KYEESLRDARRNYQSMANVWASLAQDSNVATALGLVFFVIFYRTVVLSYRRQKKDYED RLKIEKAEAEERRKMRELEREMEGIEGEDDEAEQVGGEQNPYLKMAMQFMKSGARVRR AHNKRLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLC GPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEARENAPSVVF IDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPAL VRPGRFDRKIFIPKPGLIGRMEILQVHARKKPMAEDVDYMAVASMTDGMVGAELANIV EVAAINMIRDGRTEITTDDLLQAAQIEERGMLDRKERGPETWKQVAINEAAMAVVAVN FPDLRNIEFVTIAPRAGRELGYVRMKMDHIKFKEGMLSRQSLLDHITVQLAPRAADEL WYGEGQLSTIWAETADNARSAARTFVLGGLSEKHHGLSNFWVADRINEVDLEALRIVN MCYERAKEILQQNRKLMDAVVDELVQKKSLTKQEFFGLVELHGSLKPMPPSILDVRLA KRAQFQEMMMNQKVEVAGSSS" mRNA complement(join(18900895..18900916,18901853..18901931, 18902205..18902290,18903108..18903280,18903578..18903718, 18903855..18904019,18904154..18904255,18904482..18904654, 18905917..18907469)) /locus_tag="TCM_028857" /product="Cell division protein ftsH, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04910.1" /inference="similar to AA sequence:ricco:30146.m003530" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc163t6; inference alignment:Newbler:10:TSA:cgbaB_g04209t00001" mRNA complement(join(18901848..18902204,18903578..18903718, 18903855..18904019,18904154..18904255,18904482..18904654, 18905917..18907469)) /locus_tag="TCM_028857" /product="Cell division protein ftsH, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04910.1" /inference="similar to AA sequence:ricco:30146.m003530" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc193t6_C1; inference alignment:Newbler:10:TSA:cgbaB_g04209t00001" CDS complement(join(18902178..18902204,18903578..18903718, 18903855..18904019,18904154..18904255,18904482..18904654, 18905917..18907249)) /locus_tag="TCM_028857" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30146.m003530" /codon_start=1 /product="Cell division protein ftsH, putative isoform 3" /protein_id="EOY26891.1" /db_xref="TAIR:AT3G16290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RQG8" /translation="MACHFSFGSSLYPELPSLKLKSQNPFFSTTYPSISCQIYSFKSN NSDDDDKTKKSQFNFLALPITLTIISTSFPQKSSLAAVKVSDRKKTQKKTQEALTPEQ LKQWSKDLPIVKSRIPYTEILSLKLEGKLKHLIKPPSVSLKQRAEPVLVVLEDSRVLR TVLPSIDSDRKFWDSWDELKIESLCVNAYTPPIKRPEVPAPYLGFLGRVPASMLSWFK PKKESKRAAEIRRAREEFKRQRKEELARMREEREMIEKAIKVQKKEEVRRKKQEIRKR KYEESLRDARRNYQSMANVWASLAQDSNVATALGLVFFVIFYRTVVLSYRRQKKDYED RLKIEKAEAEERRKMRELEREMEGIEGEDDEAEQVGGEQNPYLKMAMQFMKSGARVRR AHNKRLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLC GPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEARENAPSVVF IDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPAL VRPGRFDRKIFIPKPGLIGRMEILQVHARKKPMAEDVDYMAVASMTDGMVGAELANIV EVAAINMIRDGRTEVCNISSCL" CDS complement(join(18903230..18903280,18903578..18903718, 18903855..18904019,18904154..18904255,18904482..18904654, 18905917..18907249)) /locus_tag="TCM_028857" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30146.m003530" /codon_start=1 /product="Cell division protein ftsH, putative isoform 2" /protein_id="EOY26890.1" /db_xref="TAIR:AT3G16290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RQG8" /translation="MACHFSFGSSLYPELPSLKLKSQNPFFSTTYPSISCQIYSFKSN NSDDDDKTKKSQFNFLALPITLTIISTSFPQKSSLAAVKVSDRKKTQKKTQEALTPEQ LKQWSKDLPIVKSRIPYTEILSLKLEGKLKHLIKPPSVSLKQRAEPVLVVLEDSRVLR TVLPSIDSDRKFWDSWDELKIESLCVNAYTPPIKRPEVPAPYLGFLGRVPASMLSWFK PKKESKRAAEIRRAREEFKRQRKEELARMREEREMIEKAIKVQKKEEVRRKKQEIRKR KYEESLRDARRNYQSMANVWASLAQDSNVATALGLVFFVIFYRTVVLSYRRQKKDYED RLKIEKAEAEERRKMRELEREMEGIEGEDDEAEQVGGEQNPYLKMAMQFMKSGARVRR AHNKRLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLC GPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEARENAPSVVF IDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPAL VRPGRFDRKIFIPKPGLIGRMEILQVHARKKPMAEDVDYMAVASMTDGMVGAELANIV EVAAINMIRDGRTELHFCRLRPMICSKLHK" mobile_element 18908243..18908627 /note="source:CACAO_MITE_S174_scaffold_7 1 411" /mobile_element_type="transposon:TIR/MITE" gene complement(18908794..18911514) /locus_tag="TCM_028858" /note="dbxref CacaoGD:Thecc1EG028858" mRNA complement(join(18908794..18909698,18909781..18909916, 18910932..18911514)) /locus_tag="TCM_028858" /product="CASP-like protein POPTRDRAFT_553757, putative" /inference="alignment:exonerate- protein:2:ricco:30146.m003529" /inference="similar to AA sequence:Phytozome:POPTR_0003s04890.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02927t00001" CDS complement(join(18909483..18909698,18909781..18909916, 18910932..18911245)) /locus_tag="TCM_028858" /codon_start=1 /product="CASP-like protein POPTRDRAFT_553757, putative" /protein_id="EOY26892.1" /db_xref="Phytozome:POPTR_0003s04890.1" /db_xref="TAIR:AT3G16300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXD6" /translation="MMMNGYKRPPSPPLSTLPMQLTEAKVVAENGQSEPRVGLFNAGL GSKTGVWTRGDVVLVILRLLCMGASLTAMLFMVTARQVSTASFYGFQLQLHSKWSFSY SFEYLVGVTAAAAGYSLLQSLIGGSRLLRKSPLIPSRNQAWLTFAGDQILAYAMMSAG SAASGVTNLNRTGIRHTALPNFCKALDSFCDHVAVSIAFTFFSCVLYAASAVQDVIWL SKH" mobile_element 18914073..18914125 /note="source:INTACT135F_F90_scaffold_2-int 12864 12916" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18914126..18914151 /note="source:scaffold_9_CACTA_0932 2785 2863" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18914353..18914800 /note="source:scaffold_5_CACTA_0614 2 452" /mobile_element_type="transposon:TIR/CACTA" gene complement(18914737..18918142) /locus_tag="TCM_028859" /note="dbxref CacaoGD:Thecc1EG028859" mRNA complement(join(18914737..18915502,18916179..18916290, 18916864..18917472,18917990..18918142)) /locus_tag="TCM_028859" /product="Mitotic phosphoprotein N' end (MPPN) family protein" /inference="alignment:exonerate- protein:2:ricco:30146.m003528" /inference="similar to AA sequence:Phytozome:Glyma15g02180.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16039t1" CDS complement(join(18915200..18915502,18916179..18916290, 18916864..18917438)) /locus_tag="TCM_028859" /codon_start=1 /product="Mitotic phosphoprotein N' end (MPPN) family protein" /protein_id="EOY26893.1" /db_xref="Phytozome:Glyma15g02180.1" /db_xref="TAIR:AT3G16310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04326" /translation="MSTTVHRTPKSGRQSLFFQDLASPVSARRGKFSSPGQAAAVSAL WRENFGGSDLPPPPMYTLEDRSDFSPESGILDYPMSPEIKSDPRNPVQTSGRDFSTPA KSKSEASTSFSVLSGQQNQQSPTSLSWWSPTKASGSEQDDKGKGSPVEGVVQPGALIT LPPPREVARPEIQRNSIPAGNLDEEEWVTVYGFSPADTNLVLREFEKCGVILKHVPGP RDANWMHILYQNRSDAQRALGKNGMQINGVLIVGVKPVDPMQRQALDERLNNQGFMTL PPPASRSSELNNFRPSHPYYLQNGNTNARQSGGAIANPTKSLGLKVMEFLFGY" gene complement(18918612..18930685) /locus_tag="TCM_028860" /note="dbxref CacaoGD:Thecc1EG028860" mRNA complement(join(18918612..18919091,18919200..18919262, 18919880..18920062,18930445..18930685)) /locus_tag="TCM_028860" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s18890.1" /inference="similar to AA sequence:Phytozome:GSVIVT01017012001" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc5840t4" CDS complement(join(18918909..18919091,18919200..18919262, 18919880..18919951)) /locus_tag="TCM_028860" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26894.1" /db_xref="Phytozome:GSVIVT01017012001" /translation="MANVCCSIETEPRTLNQGQLNHAREMAADVAQKLEPREASAILI EGLITAAEIKEVELTDKEKEVECNQRAHITERPCQCSCNNVESPDTNNILNNLKEPVT APF" mobile_element complement(18921756..18923428) /note="source:INTACT153_F18_scaffold_9-int 3697 5380" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18923417..18923847 /note="source:scaffold_2_CACTA_0267 3291 3726" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18923848..18924961 /note="source:MITE_hAT_19 1 1114" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(18924960..18926827) /note="source:INTACT153_F18_scaffold_9-int 227 2061" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18928032..18928094 /note="source:CACAO_M_E3248_F5_scaffold_1 3658 3711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18928043..18928121) /note="source:CACAO_M_S_E5162_F13_scaffold_1 5144 5212" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18930732..18932366) /locus_tag="TCM_028861" /note="dbxref CacaoGD:Thecc1EG028861" mRNA complement(join(18930732..18931430,18931661..18932366)) /locus_tag="TCM_028861" /product="GATA transcription factor 9, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g01960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037205t1" /inference="similar to AA sequence:Phytozome:Glyma07g01960.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc554t1" CDS complement(join(18930768..18931430,18931661..18931960)) /locus_tag="TCM_028861" /note="paralog of Thecc1EG037205t1" /codon_start=1 /product="GATA transcription factor 9, putative" /protein_id="EOY26895.1" /db_xref="Phytozome:Glyma07g01960.1" /db_xref="TAIR:AT4G32890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIY7" /translation="MEAADFFVGGYYGGAAGGDFSSEMRMSAEQKLAENFTVDDLLDF SNEDAIISDGFFDNVAGNSTDSSTVTCNSSVSGGDNHFSSANFPHSSQFSGELCVPYD DLAELEWLSNFVEDSFSTDQNLQSNLQILATSKSPTPESSSSSTRIESLTRSPTNPIF QNDTPLPGKARSKRSRAAPCDWSTRLLHLTPKSTGQKKRDNPNANSESLGRKCLHCAA EKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFMSTKHSNSHRKVVELRR QKDLQRAQQQQFLSQTSIFGISNGGGGGDDFLIHHGGPDFRHMI" gene 18934587..18944026 /locus_tag="TCM_028862" /note="dbxref CacaoGD:Thecc1EG028862" mRNA join(18934587..18935110,18941943..18942396, 18942617..18942721,18942795..18942910,18943816..18944026) /locus_tag="TCM_028862" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.25 coverage" mobile_element 18934702..18934741 /note="source:CACAO_PIF_E8_scaffold_1 1 40" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 18935970..18936751 /note="source:scaffold_4_CACTA_0497 9565 10136" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18936876..18938152 /note="source:CACAO_on_E732_scaffold_9 122 1393" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 18938150..18938619 /note="source:CACAO_PIF_E119_scaffold_3 1806 2301" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS join(18942146..18942396,18942617..18942721, 18942795..18942858) /locus_tag="TCM_028862" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26896.1" /translation="MLFALEGQVSKMEVVMGEVKDRFKEFKANIKELRSRDGKLYGKM QSILNESVDMLNQQDVMLKNLVKVLKQRYKGLRMSFSHLRCDEKLSGMAISTWMKFQK QLYLKYVNDETRAKLRSGKEAFLAFLNDLKPWAKLEL" gene complement(18943980..18947984) /locus_tag="TCM_028864" /note="dbxref CacaoGD:Thecc1EG028864" mRNA complement(join(18943980..18944351,18946417..18947311, 18947911..18947984)) /locus_tag="TCM_028864" /product="Transducin family protein / WD-40 repeat family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s08010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017927t1" /inference="similar to AA sequence:Phytozome:Glyma08g43390.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16057t2" CDS complement(join(18944298..18944351,18946417..18947301)) /locus_tag="TCM_028864" /note="paralog of Thecc1EG017927t1" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein" /protein_id="EOY26897.1" /db_xref="Phytozome:Glyma08g43390.1" /db_xref="TAIR:AT2G30050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6ZLM6" /translation="MPPQKIETGHQDTVHDVAMDYYGKRIASASSDTTIKIAGVSNNT HQHLATLSAHQGPVWQVAWAHPKFGSLLASCSYDGRVIIWKEGNQNEWSQAHVFEDHK SSVNSIAWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS TAPGALVGSGLLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWA PNLGLPKSTIASASQDGKVIIWTVAKEGDQWEGKVLHDFNTPVWRVSWSLTGNILAVA DGNNNVTLWKEAVDGEWQQLVCFPSTMCLVGLLHFL" gene 18949173..18952642 /locus_tag="TCM_028865" /note="dbxref CacaoGD:Thecc1EG028865" mRNA join(18949173..18949587,18952307..18952642) /locus_tag="TCM_028865" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.21 coverage" CDS 18949352..18949576 /locus_tag="TCM_028865" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26898.1" /translation="MDATSPPSSAHQNHSRTPPNFLSGHACLLPTYLKRSGMCVSRAE DFMCMTSMDGDSAFSRPDCPCCTTYFDYLT" gene 18953085..18962294 /locus_tag="TCM_028866" /note="dbxref CacaoGD:Thecc1EG028866" mRNA join(18953085..18953594,18954372..18954659, 18954947..18955106,18955356..18955456,18955563..18955653, 18955950..18956045,18956132..18956245,18956332..18956415, 18956574..18956729,18956826..18956900,18957071..18957177, 18957264..18957456,18958175..18958360,18958506..18958586, 18959258..18959392,18959488..18959813,18960356..18960461, 18960926..18961075,18961231..18961923) /locus_tag="TCM_028866" /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30146.m003520" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037207t1" /inference="similar to AA sequence:ricco:30146.m003520" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16069t1" CDS join(18954451..18954659,18954947..18955106, 18955356..18955456,18955563..18955653,18955950..18956045, 18956132..18956245,18956332..18956415,18956574..18956729, 18956826..18956900,18957071..18957177,18957264..18957456, 18958175..18958360,18958506..18958586,18959258..18959392, 18959488..18959813,18960356..18960461,18960926..18961075, 18961231..18961377) /locus_tag="TCM_028866" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30146.m003520; paralog of Thecc1EG037207t1" /codon_start=1 /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 1" /protein_id="EOY26899.1" /db_xref="TAIR:AT1G52150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZU11" /translation="MAMSCKDGKLGNLDNGKYVRYTPEQVEALERLYHECPKPSSIRR QQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDR LQKQVSQLVYENGYFRQHTQNATLATKDPSCESVVTSGQHHVTPQHPPRDASPAGLLS IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT RVAELLKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYT SVLEDGSLVVCERSLKNTQNGPSMPAVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHM DLEPWRVPEVLRPLYESSTVLAQKTTMAALRQLRQIAQEVSQSNVTGWGRRPAALRAL SQRLSRGFNEALNGFTDEGWSMMGNDGMDDVTILVNSSPDKLMGLNLSFANGFPSVSN AVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAVKVGPCSLPGSRVGGF GGQVILPLAHTIEHEEFLEVIKLEGVAHSPEDAIMPRDVFLLQLCSGMDENAVGTCAE LIFAPIDASFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALEIGPTGNKASNDY SGNSGCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHA GLRTPLGTPEAQTLARWICQSYRLYMGVELLKSGSEGSETILKTLWHHSDAIMCCSLK ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKTLCTEFPQIMQQGFACLQGG ICLSSMGRPVSYERAVAWKVLNEEENAHCICFMFINWSFV" mRNA join(18955078..18955106,18955356..18955456, 18955563..18955653,18955950..18956045,18956132..18956245, 18956332..18956415,18956574..18956729,18956826..18956900, 18957071..18957177,18957264..18957456,18958175..18958360, 18958506..18958586,18959258..18959392,18959488..18959813, 18960356..18960461,18960917..18961075,18961231..18962294) /locus_tag="TCM_028866" /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30146.m003520" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037207t1" /inference="similar to AA sequence:ricco:30146.m003520" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc252t7; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16069t1" mRNA join(18955078..18955106,18955356..18955456, 18955563..18955653,18955950..18956045,18956132..18956245, 18956332..18956415,18956574..18956729,18956826..18956900, 18957071..18957177,18957264..18957456,18958175..18958360, 18958506..18958586,18959258..18959392,18959488..18959813, 18960356..18960461,18960956..18961075,18961231..18962294) /locus_tag="TCM_028866" /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30146.m003520" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037207t1" /inference="similar to AA sequence:ricco:30146.m003520" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc252t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16069t1" mRNA join(18955078..18955106,18955356..18955456, 18955563..18955653,18955950..18956045,18956132..18956245, 18956332..18956415,18956574..18956729,18956826..18956900, 18957071..18957177,18957264..18957456,18958175..18958360, 18958506..18958586,18959258..18959392,18959488..18959813, 18960356..18960461,18960998..18961075,18961231..18962294) /locus_tag="TCM_028866" /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30146.m003520" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037207t1" /inference="similar to AA sequence:ricco:30146.m003520" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc252t5; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16069t1" CDS join(18955639..18955653,18955950..18956045, 18956132..18956245,18956332..18956415,18956574..18956729, 18956826..18956900,18957071..18957177,18957264..18957456, 18958175..18958360,18958506..18958586,18959258..18959392, 18959488..18959813,18960356..18960461,18960917..18961075, 18961231..18961377) /locus_tag="TCM_028866" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30146.m003520; paralog of Thecc1EG037207t1" /codon_start=1 /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 2" /protein_id="EOY26900.1" /db_xref="TAIR:AT1G52150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZU11" /translation="MPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAELLKD RPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSL VVCERSLKNTQNGPSMPAVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWRVP EVLRPLYESSTVLAQKTTMAALRQLRQIAQEVSQSNVTGWGRRPAALRALSQRLSRGF NEALNGFTDEGWSMMGNDGMDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKAS MLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAVKVGPCSLPGSRVGGFGGQVILPL AHTIEHEEFLEVIKLEGVAHSPEDAIMPRDVFLLQLCSGMDENAVGTCAELIFAPIDA SFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALEIGPTGNKASNDYSGNSGCMR SVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRTPLGT PEAQTLARWICQSYRLYMGVELLKSGSEGSETILKTLWHHSDAIMCCSLKFLQALPVF TFANQAGLDMLETTLVALQDITLEKIFDDHGRKTLCTEFPQIMQQGFACLQGGICLSS MGRPVSYERAVAWKVLNEEENAHCICFMFINWSFV" CDS join(18955639..18955653,18955950..18956045, 18956132..18956245,18956332..18956415,18956574..18956729, 18956826..18956900,18957071..18957177,18957264..18957456, 18958175..18958360,18958506..18958586,18959258..18959392, 18959488..18959813,18960356..18960461,18960956..18961075, 18961231..18961377) /locus_tag="TCM_028866" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30146.m003520; paralog of Thecc1EG037207t1" /codon_start=1 /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 3" /protein_id="EOY26901.1" /db_xref="TAIR:AT1G52150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZU11" /translation="MPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAELLKD RPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSL VVCERSLKNTQNGPSMPAVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWRVP EVLRPLYESSTVLAQKTTMAALRQLRQIAQEVSQSNVTGWGRRPAALRALSQRLSRGF NEALNGFTDEGWSMMGNDGMDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKAS MLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAVKVGPCSLPGSRVGGFGGQVILPL AHTIEHEEFLEVIKLEGVAHSPEDAIMPRDVFLLQLCSGMDENAVGTCAELIFAPIDA SFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALEIGPTGNKASNDYSGNSGCMR SVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRTPLGT PEAQTLARWICQSYRLYMGVELLKSGSEGSETILKTLWHHSDAIMCCSLKAGLDMLET TLVALQDITLEKIFDDHGRKTLCTEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAW KVLNEEENAHCICFMFINWSFV" CDS join(18955639..18955653,18955950..18956045, 18956132..18956245,18956332..18956415,18956574..18956729, 18956826..18956900,18957071..18957177,18957264..18957456, 18958175..18958360,18958506..18958586,18959258..18959392, 18959488..18959813,18960356..18960461,18960998..18961075, 18961231..18961377) /locus_tag="TCM_028866" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30146.m003520; paralog of Thecc1EG037207t1" /codon_start=1 /product="Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 4" /protein_id="EOY26902.1" /db_xref="TAIR:AT1G52150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZU11" /translation="MPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAELLKD RPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSL VVCERSLKNTQNGPSMPAVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWRVP EVLRPLYESSTVLAQKTTMAALRQLRQIAQEVSQSNVTGWGRRPAALRALSQRLSRGF NEALNGFTDEGWSMMGNDGMDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKAS MLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAVKVGPCSLPGSRVGGFGGQVILPL AHTIEHEEFLEVIKLEGVAHSPEDAIMPRDVFLLQLCSGMDENAVGTCAELIFAPIDA SFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALEIGPTGNKASNDYSGNSGCMR SVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRTPLGT PEAQTLARWICQSYRLYMGVELLKSGSEGSETILKTLWHHSDAIMCCSLKDITLEKIF DDHGRKTLCTEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICF MFINWSFV" gene complement(18963130..18963844) /locus_tag="TCM_028868" /note="dbxref CacaoGD:Thecc1EG028868" mRNA complement(18963130..18963844) /locus_tag="TCM_028868" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30146.m003521" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037210t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s04870.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2877t2" CDS complement(18963170..18963775) /locus_tag="TCM_028868" /note="paralog of Thecc1EG037210t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26903.1" /db_xref="Phytozome:POPTR_0003s04870.1" /db_xref="TAIR:AT5G25840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXD8" /translation="MAPHGEAITSTYTRSKNFPEPPRLSNDNLHRTISDISFQLISKE VLDYQEAAVADEKQLPPISEVEDAKCECCGMSEECTPEYIERVRNKFLGKWICGLCAE AVKEEMEKNGGKIDEALSAHMNTCARFNKFGRAYPALLTAEAMREILRKGSRLEGKGT LRSKSISPRDIRGAQKKGGIARSSSCIPAITREMNNLTVAN" gene 18973114..18985026 /locus_tag="TCM_028869" /note="dbxref CacaoGD:Thecc1EG028869" mRNA join(18973114..18973287,18973403..18973475, 18973607..18973716,18973836..18973882,18974519..18974616, 18975395..18975699,18976590..18976712,18977990..18978176, 18979368..18979591,18979692..18979757,18980221..18980340, 18981394..18981470,18982081..18982200,18982289..18982508, 18983048..18983329,18984408..18985026) /locus_tag="TCM_028869" /product="CDC27 family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT3G16320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037805t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s09330.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4211t3" CDS join(18973183..18973287,18973403..18973475, 18973607..18973716,18973836..18973882,18974519..18974616, 18975395..18975699,18976590..18976712,18977990..18978176, 18979368..18979591,18979692..18979757,18980221..18980340, 18981394..18981470,18982081..18982200,18982289..18982508, 18983048..18983329,18984408..18984458) /locus_tag="TCM_028869" /note="paralog of Thecc1EG037805t1" /codon_start=1 /product="CDC27 family protein, putative" /protein_id="EOY26904.1" /db_xref="Phytozome:POPTR_0018s09330.1" /db_xref="TAIR:AT2G20000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LGU6" /translation="MEALLANYVEKSLNNYMRRNAIFLCERLCAEFPSEVNLQLLARC YLNNNQAHSAYHILKGTRTAQSRYLFALACLEMDLFGEAEAALLPIEELSAEVSNGAA VQYLLGIIYRDTDRMKSSVEHFRKALSVDPLFWAAYEELCILGEAEEATIYFGDAAIR YVQEHYLRNASSCLQIAGVDQSLDSSQTFGLEDLSLRRSQQMEGNNIKDICHNNHGRP LLTGPAGQTTNSCCKISVLNTPSPLLTQLSDMAPAPLIRNIQRPQSEGFLRSSTQPRR KSVHVNESAQVIRGSLFLDSGCRRSARLAAARRCFNRSQGSENDANNLLALTKSNSRT YSSTVCRGQTENLEEGKLPETYDDAVSEFRAPSSLSSSNDVKSVQHEIVNTELSSSIS NGSTIKSGVLDTMSLLRILGEGYRHLCGYRCQEALNVYQKLSLKQYNTGWVLSQVGKA YFELVDYLNADYAFSLARQISPYHPEGMDVYSTVLYHLKEDMKLKYLAQELISVDRFA PQSWCAIGNCYSLQKDHETALKSFQRAVQLNSRFAYAHTLSGHEHVIMEDYRDGVECY QRALRVDARHYKSWYGLGMIYLRQEKFEFAEHHFRQAYQINPYSSVIMYYLGTTLESL KRSEEALEMMEKAIVTDNKNPLPKYNKAKMLVTLGKLNEALEILEELKECSPRESSIY ALIGEIYKQHKKHDKAMLHFGIALDLKPCTLDVAEIEAAIEKLILPDEIDDDF" gene 18987939..18988939 /locus_tag="TCM_028870" /note="dbxref CacaoGD:Thecc1EG028870" mRNA 18987939..18988939 /locus_tag="TCM_028870" /product="Avr9/Cf-9 rapidly elicited protein 146, putative" /inference="alignment:exonerate-protein:2:frave:gene25644" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037801t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s18950.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07361t00001" CDS 18988044..18988679 /locus_tag="TCM_028870" /note="paralog of Thecc1EG037801t1" /codon_start=1 /product="Avr9/Cf-9 rapidly elicited protein 146, putative" /protein_id="EOY26905.1" /db_xref="Phytozome:POPTR_0001s18950.1" /db_xref="TAIR:AT1G52140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FQZ6" /translation="MEQNLPVIAKRVWSIVRAVLFMMRKGISKRKLMVDLNMMLKRGK IASAKAIGNLMFHHHHNHSNHHKDPHISSFMAAAQEYEFSCSNTPNYIFPFNLATKKK SSINNYYHHFFACTHAPPTHDDDDVATVNAVKVVLEMFNNNDSNMVVEASPMLPGFGQ TPLARQLRITDSPFPLRDVDEDNGYVDKAAEDFINRFYKDLKQQNKRMAEL" mobile_element complement(18994931..18995095) /note="source:scaffold_5_CACTA_0610 5153 5340" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18999345..19002288) /note="source:INTACT620_F275_scaffold_2-int 27 2977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19003615..19003849) /note="source:scaffold_5_CACTA_0610 5080 5290" /mobile_element_type="transposon:TIR/CACTA" gene 19004084..19045163 /locus_tag="TCM_028872" /note="dbxref CacaoGD:Thecc1EG028872" mRNA join(19004084..19005035,19006477..19006608, 19006701..19006774,19006858..19006927,19007030..19007085, 19007192..19007263,19007482..19007576,19007662..19007728, 19007818..19007947,19008061..19008279,19008488..19008630, 19008865..19009039,19009198..19009288,19009374..19009531, 19009619..19009807,19009901..19010479) /locus_tag="TCM_028872" /product="Casein kinase I protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017003001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037217t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017003001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4298t5" mRNA join(19004249..19005035,19006477..19006608, 19006701..19006774,19006858..19006927,19007030..19007085, 19007192..19007263,19007482..19007576,19007662..19007728, 19007818..19007947,19008061..19008279,19008488..19008630, 19009669..19009807,19009901..19010534) /locus_tag="TCM_028872" /product="Casein kinase I protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017003001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037217t1" /inference="similar to AA sequence:Phytozome:Glyma04g09070.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc404t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4298t5" CDS join(19004583..19005035,19006477..19006608, 19006701..19006774,19006858..19006927,19007030..19007085, 19007192..19007263,19007482..19007576,19007662..19007728, 19007818..19007947,19008061..19008279,19008488..19008630, 19008865..19009039,19009198..19009288,19009374..19009531, 19009619..19009807,19009901..19009960) /locus_tag="TCM_028872" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037217t1" /codon_start=1 /product="Casein kinase I protein isoform 1" /protein_id="EOY26906.1" /db_xref="Phytozome:GSVIVT01017003001" /db_xref="TAIR:AT2G25760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4ISN5" /translation="MPVLRSGARRGRAAAPKQQQQQQQPNPIEEGEAIATRTRRRRKA AEEAAAAAAAPVPKNNNNNNNNNDDKNKNKKQRVQGINEKLAVAAAGAAAVKVEEKNN NNRVLEEGERAEKEEVGEKAMDEFDSGGRSNDKGNAGEDEGGTAPLPEKVQVGGSPVY RIDRKLGKGGFGQVCVGRRVSAVNTNDRNGSGAVEVALKFEHRSSKGCNYGPPYEWQV YNTLGGSHGIPRVHYKGRQGDYYIMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAI SILEKMHSRGYVHGDVKPENFLLGPIGTPDEKKLFLVDLGLATRWRDSSTGLHVEYDQ RPDVFRGTVRYASVHAHLGRTCSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFFVC KKKMSTSPDALCCFCPIPFRLFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPLN TEGAQKLIFQVGHKRGRLTMDEEEDEQPKKKVRMGMPATQWISVYNACRPMKQRYHYN VADGRLAQHIEKGNEDGLFISSVASCQNLWALIMDAGTGFSSQVYELSPHFLHKEWIM EQWEKNYYISAIAGATNGFSLVVMSRGTQYSQQSYKVSESFPFKWINKKWKEGFHVTS MATSGSRWGVVMSRGAGFSDQVVELDFLYPSEGIHRRWDCGYRITATAATWDQAAFVL SVPRRKPMDETQETLRTSAFPSTHVKEKWAKNLYIASVCYGRTVS" CDS join(19004583..19005035,19006477..19006608, 19006701..19006774,19006858..19006927,19007030..19007085, 19007192..19007263,19007482..19007576,19007662..19007728, 19007818..19007947,19008061..19008279,19008488..19008630, 19009669..19009807,19009901..19009960) /locus_tag="TCM_028872" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG037217t1" /codon_start=1 /product="Casein kinase I protein isoform 3" /protein_id="EOY26908.1" /db_xref="Phytozome:Glyma04g09070.1" /db_xref="TAIR:AT2G25760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4ISN5" /translation="MPVLRSGARRGRAAAPKQQQQQQQPNPIEEGEAIATRTRRRRKA AEEAAAAAAAPVPKNNNNNNNNNDDKNKNKKQRVQGINEKLAVAAAGAAAVKVEEKNN NNRVLEEGERAEKEEVGEKAMDEFDSGGRSNDKGNAGEDEGGTAPLPEKVQVGGSPVY RIDRKLGKGGFGQVCVGRRVSAVNTNDRNGSGAVEVALKFEHRSSKGCNYGPPYEWQV YNTLGGSHGIPRVHYKGRQGDYYIMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAI SILEKMHSRGYVHGDVKPENFLLGPIGTPDEKKLFLVDLGLATRWRDSSTGLHVEYDQ RPDVFRGTVRYASVHAHLGRTCSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFFVC KKKMSTSPDALCCFCPIPFRLFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPLN TEGAQKLIFQVGHKRGRLTMDEEEDEQPKKKVRMGMPATQWISVYNACRPMKQRDCGY RITATAATWDQAAFVLSVPRRKPMDETQETLRTSAFPSTHVKEKWAKNLYIASVCYGR TVS" mRNA join(19006745..19006774,19006858..19006927, 19007030..19007085,19007192..19007263,19007482..19007576, 19007662..19007728,19007818..19007947,19008061..19008279, 19008488..19008630,19008865..19009039,19009198..19009288, 19009374..19009531,19009619..19009807,19009907..19010257, 19036703..19036717,19036997..19036999,19045151..19045163) /locus_tag="TCM_028872" /product="Kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017003001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037217t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017003001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc408t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4298t5" CDS join(19006925..19006927,19007030..19007085, 19007192..19007263,19007482..19007576,19007662..19007728, 19007818..19007947,19008061..19008279,19008488..19008630, 19008865..19009039,19009198..19009288,19009374..19009531, 19009619..19009807,19009907..19009960) /locus_tag="TCM_028872" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037217t1" /codon_start=1 /product="Kinase family protein isoform 2" /protein_id="EOY26907.1" /db_xref="Phytozome:GSVIVT01017003001" /db_xref="TAIR:AT2G25760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4ISN5" /translation="MVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSRG YVHGDVKPENFLLGPIGTPDEKKLFLVDLGLATRWRDSSTGLHVEYDQRPDVFRGTVR YASVHAHLGRTCSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFFVCKKKMSTSPDA LCCFCPIPFRLFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPLNTEGAQKLIFQ VGHKRGRLTMDEEEDEQPKKKVRMGMPATQWISVYNACRPMKQRYHYNVADGRLAQHI EKGNEDGLFISSVASCQNLWALIMDAGTGFSSQVYELSPHFLHKEWIMEQWEKNYYIS AIAGATNGFSLVVMSRGTQYSQQSYKVSESFPFKWINKKWKEGFHVTSMATSGSRWGV VMSRGAGFSDQVVELDFLYPSEGIHRRWDCGYRITATAATWDQAAFVLSVPRRKPMDE TQETLRTSAFPSTHVKWAKNLYIASVCYGRTVS" gene complement(19010822..19014715) /locus_tag="TCM_028873" /note="dbxref CacaoGD:Thecc1EG028873" mRNA complement(join(19010822..19011159,19011330..19011449, 19011545..19011606,19011689..19011746,19011837..19011980, 19012208..19012259,19012856..19012916,19013673..19013808, 19013900..19013945,19014071..19014156,19014461..19014715)) /locus_tag="TCM_028873" /product="F9L1.16, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g022620.1" /inference="similar to AA sequence:ricco:30146.m003517" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12030t00001" mRNA complement(join(19010905..19011158,19011837..19011980, 19012208..19012259,19012856..19012916,19013673..19013808, 19013900..19013945,19014071..19014156,19014461..19014665)) /locus_tag="TCM_028873" /product="F9L1.16, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g022620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037218t2" /inference="similar to AA sequence:ricco:30146.m003517" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc530t8_C2; inference alignment:Newbler:10:TSA:cgbaB_g12030t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4258t1" mRNA complement(join(19010906..19011159,19011330..19011449, 19011837..19011980,19012208..19012259,19012856..19012916, 19013673..19013808,19013900..19013945,19014071..19014156, 19014461..19014575)) /locus_tag="TCM_028873" /product="Sequence-specific DNA binding, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g022620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037218t2" /inference="similar to AA sequence:ricco:30146.m003517" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4258t3; inference alignment:Newbler:10:TSA:cgbaB_g12030t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4258t1" CDS complement(join(19011090..19011158,19011837..19011980, 19012208..19012259,19012856..19012916,19013673..19013808, 19013900..19013945,19014071..19014156,19014461..19014613)) /locus_tag="TCM_028873" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30146.m003517; paralog of Thecc1EG037218t2" /codon_start=1 /product="F9L1.16, putative isoform 5" /protein_id="EOY26913.1" /db_xref="TAIR:AT1G15215.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XI47" /translation="MTLFTLLKPPKTKSIVTFKGNSACIGKDFRFWSVMDDKDSWDSV SEFTLAEILEMENIYKEIGEKTLNKEFCQELATNFSCSSNRMGKSAVTWQQVQIWFQE KQMETQSKQRPSPMALELFVDLSSANSSKPPGSLRRHKGKVEDLKELSFEARSSKDYA WYDVDSFLTYRVLSTGELEVRVRFSGFAKTEDEWVNVEKAVRERSIPLEPSECNIVKI GDLVLCYQKRFRCRGYVAGLRNRFFGFTSK" CDS complement(join(19011115..19011159,19011330..19011449, 19011545..19011606,19011689..19011746,19011837..19011980, 19012208..19012259,19012856..19012916,19013673..19013808, 19013900..19013945,19014071..19014156,19014461..19014613)) /locus_tag="TCM_028873" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30146.m003517" /codon_start=1 /product="F9L1.16, putative isoform 1" /protein_id="EOY26909.1" /db_xref="TAIR:AT1G15215.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XI47" /translation="MTLFTLLKPPKTKSIVTFKGNSACIGKDFRFWSVMDDKDSWDSV SEFTLAEILEMENIYKEIGEKTLNKEFCQELATNFSCSSNRMGKSAVTWQQVQIWFQE KQMETQSKQRPSPMALELFVDLSSANSSKPPGSLRRHKGKVEDLKELSFEARSSKDYA WYDVDSFLTYRVLSTGELEVRVRFSGFAKTEDEWVNVEKAVRERSIPLEPSECNIVKI GDLVLCYQTQRPDDLLIFPCNSPVYGLALRSNGRVYLTDIDGEGTVRKDREHYQVYYD AHVVDIQRRVHDVRGCSCIFVVCYDHDYSKEKVPLQRLCCRPPQ" CDS complement(join(19011115..19011159,19011330..19011449, 19011837..19011980,19012208..19012259,19012856..19012916, 19013673..19013808,19013900..19013945,19014071..19014156, 19014461..19014511)) /locus_tag="TCM_028873" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30146.m003517; paralog of Thecc1EG037218t2" /codon_start=1 /product="Sequence-specific DNA binding, putative isoform 3" /protein_id="EOY26911.1" /db_xref="TAIR:AT1G15215.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XI47" /translation="MDDKDSWDSVSEFTLAEILEMENIYKEIGEKTLNKEFCQELATN FSCSSNRMGKSAVTWQQVQIWFQEKQMETQSKQRPSPMALELFVDLSSANSSKPPGSL RRHKGKVEDLKELSFEARSSKDYAWYDVDSFLTYRVLSTGELEVRVRFSGFAKTEDEW VNVEKAVRERSIPLEPSECNIVKIGDLVLCYQDREHYQVYYDAHVVDIQRRVHDVRGC SCIFVVCYDHDYSKEKVPLQRLCCRPPQ" mRNA complement(join(19011329..19011449,19011545..19011705, 19011837..19011980,19012208..19012259,19012856..19012916, 19013673..19013808,19013900..19013945,19014071..19014156, 19014461..19014665)) /locus_tag="TCM_028873" /product="F9L1.16, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g022620.1" /inference="similar to AA sequence:ricco:30146.m003517" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc530t6_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4258t1; inference alignment:Newbler:10:TSA:cgbaB_g12030t00001" mRNA complement(join(19011426..19011705,19011837..19011980, 19012208..19012259,19012856..19012916,19013673..19013808, 19013900..19013945,19014071..19014156,19014461..19014665)) /locus_tag="TCM_028873" /product="F9L1.16, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g022620.1" /inference="similar to AA sequence:ricco:30146.m003517" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc530t7_C2; alternateUTRof:Thecc1EG028873t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4258t1; inference alignment:Newbler:10:TSA:cgbaB_g12030t00001" CDS complement(join(19011601..19011705,19011837..19011980, 19012208..19012259,19012856..19012916,19013673..19013808, 19013900..19013945,19014071..19014156,19014461..19014613)) /locus_tag="TCM_028873" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30146.m003517" /codon_start=1 /product="F9L1.16, putative isoform 2" /protein_id="EOY26910.1" /db_xref="TAIR:AT1G15215.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XI47" /translation="MTLFTLLKPPKTKSIVTFKGNSACIGKDFRFWSVMDDKDSWDSV SEFTLAEILEMENIYKEIGEKTLNKEFCQELATNFSCSSNRMGKSAVTWQQVQIWFQE KQMETQSKQRPSPMALELFVDLSSANSSKPPGSLRRHKGKVEDLKELSFEARSSKDYA WYDVDSFLTYRVLSTGELEVRVRFSGFAKTEDEWVNVEKAVRERSIPLEPSECNIVKI GDLVLCYQSCLWFRYLNRTTVKSWCFAFWIYIHELPIKITQH" CDS complement(join(19011601..19011705,19011837..19011980, 19012208..19012259,19012856..19012916,19013673..19013808, 19013900..19013945,19014071..19014156,19014461..19014613)) /locus_tag="TCM_028873" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30146.m003517" /codon_start=1 /product="F9L1.16, putative isoform 2" /protein_id="EOY26912.1" /db_xref="TAIR:AT1G15215.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XI47" /translation="MTLFTLLKPPKTKSIVTFKGNSACIGKDFRFWSVMDDKDSWDSV SEFTLAEILEMENIYKEIGEKTLNKEFCQELATNFSCSSNRMGKSAVTWQQVQIWFQE KQMETQSKQRPSPMALELFVDLSSANSSKPPGSLRRHKGKVEDLKELSFEARSSKDYA WYDVDSFLTYRVLSTGELEVRVRFSGFAKTEDEWVNVEKAVRERSIPLEPSECNIVKI GDLVLCYQSCLWFRYLNRTTVKSWCFAFWIYIHELPIKITQH" gene complement(19014850..19017395) /locus_tag="TCM_028874" /note="dbxref CacaoGD:Thecc1EG028874" mRNA complement(join(19014850..19015191,19015974..19016334, 19016493..19017395)) /locus_tag="TCM_028874" /product="Downstream target of A-4, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04760.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04760.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g08341t00001" CDS complement(join(19014964..19015191,19015974..19016334, 19016493..19017022)) /locus_tag="TCM_028874" /codon_start=1 /product="Downstream target of A-4, putative" /protein_id="EOY26914.1" /db_xref="Phytozome:POPTR_0011s04760.1" /db_xref="TAIR:AT1G79760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYL0" /translation="MAVSPESMPEKPLDFRAPPPSPIASGRRSCVTNDDVLSEFLEHS LRVPDLILPDKVFPRQKFIENPPKIDFQLLSSMESDSVPKILDSIATIGCFQLVNYGI PGESIRSALAAAAGIFQLPPEKRTAVTRSPEKLYGFEEVHGEEEGEQSEEFVWCRGEG LKLEMEGIWTVGYSNFSEKMETLLSDIEKVAEKILLVIKESSPQKSVYENDMMQGQDI IGSACYLYKHSRNVSADQWSSSLRYDVIRMLIRGIDYSHALCLHICDESSEFHVYSKK GWVSFCPEKDALVITVGDQTQALSGGQFKHVIGRPIYKGEKEDYISMAFLYSPPPPSI SSRIDQEKGKTISLSQQAMAAILLTLVYRILVYVYNKF" mobile_element complement(19021368..19022106) /note="source:CACAO_MITE_S250_scaffold_10 255 928" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(19022221..19022815) /note="source:CACAO_on_E459_scaffold_2 1916 2510" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 19023494..19032522 /note="source:INTACT60_F127_scaffold_9-int 2697 11714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19024486..19035454) /note="source:INTACT59_F126_scaffold_9-int 1888 12856" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19031915..19036235) /locus_tag="TCM_028876" /note="dbxref CacaoGD:Thecc1EG028876" mRNA complement(join(19031915..19033730,19033809..19034151, 19035791..19036235)) /locus_tag="TCM_028876" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032030t1" /inference="similar to AA sequence:Phytozome:Glyma08g41350.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc12698t5_G4" CDS complement(join(19032531..19033730,19033809..19034151, 19035791..19035801)) /locus_tag="TCM_028876" /note="paralog of Thecc1EG032030t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26915.1" /db_xref="Phytozome:Glyma08g41350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N7D4" /translation="MFFGANLNFLSYAYLHHNKKSICHLTTINRVDPIAYMESSWPSS SYDGIYQVTQHMASTQQSEGDCLSKDHFSSLPDRVHLDLKQNDFTDLLNIWDKWGATT RTNFDRKYGHIARLLKVDMVPTIEEYSTLLQIDLDNLDKIYWRGQKTGHRRKLAKMMG ITSAKVDQNLRKKGDNECIPWIFLRSYIMKHRDTEQAQLVMALGIYGLVIFPKILGHI EVGIIDFFEQVINKVNPSPSILAETLRSLNYYRKKGEGRFVGCAQLLSIWIVSHFECK VDKFRKPFHPQTAPIREFCESEWPENRTKEQWISRFRELMSVEVTWRAPWMPHHPVLY KCGNEPWVPLMGPWGAISYAPIMVRRQFGSEQFVPMTHRLNTLEFAYGEPGFLKRIEE IAQAWKKTSRVDQGRYTDEVTTGYQIWHDQRVKDVVYPKEDALRGLVDPEPRDALLES ELARKNSEAENASWKQRYEDLQKECEKMKREVSEQRKKVRKMEGKYESLNDKFSATTS ELQREIQVR" mobile_element complement(19036953..19037209) /note="source:CACAO_MITE_S250_scaffold_10 1 234" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(19040806..19040968) /note="source:CACAO_Helitron_SS_E7_scaffold_1 559 745" /mobile_element_type="transposon:Helitron" mobile_element 19040982..19041086 /note="source:CACAO_Helitron_S_E26_scaffold_3 1 112" /mobile_element_type="transposon:Helitron" mobile_element 19043375..19043545 /note="source:CACAO_on_SS_E135_scaffold_10 8178 8339" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(19043393..19043921) /note="source:INTACT805_F19_scaffold_8-int 1 547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19043922..19044149 /note="source:CACAO_on_E69_scaffold_9 104 330" /mobile_element_type="transposon:TIR/hAT" mobile_element 19044157..19044716 /note="source:scaffold_1_CACTA_0009 2217 2737" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19044719..19045042) /note="source:scaffold_4_CACTA_0511 13195 13528" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19044759..19045082 /note="source:CACAO_on_E33_A_scaffold_3 863 1177" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(19045980..19046151) /note="source:MITE_CACTA_5 54 223" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(19046982..19047077) /note="source:CACAO_M_S_E52697_F28_scaffold_5 6059 6153" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19047015..19047092) /note="source:scaffold_9_CACTA_0927 15054 15140" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19047033..19047095 /note="source:INTACT296_F13_scaffold_9-int 13210 13269" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19048851..19063298 /locus_tag="TCM_028878" /note="dbxref CacaoGD:Thecc1EG028878" mRNA join(19048851..19049330,19052884..19053262, 19053719..19054125,19055227..19055436,19055519..19055603, 19055741..19055900,19055994..19056070,19056202..19056255, 19056666..19056756,19057330..19057631,19057839..19058437, 19058565..19058725,19058837..19058946,19059077..19059230, 19059332..19059487,19059590..19059762,19059900..19060232, 19060325..19060699,19060805..19060938,19061028..19061255, 19061381..19061552,19061726..19061980,19062078..19063298) /locus_tag="TCM_028878" /product="ABC-2 and Plant PDR ABC-type transporter family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004674" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028881t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016999001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4321t3" mobile_element 19049108..19049178 /note="source:INTACT93F_F345_scaffold_2-int 16846 16913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19049133..19049183 /note="source:scaffold_5_CACTA_0608 966 1016" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19050007..19050769) /note="source:CACAO_on_E193_scaffold_6 10370 11130" /mobile_element_type="transposon:TIR/Mutator" mRNA join(19053246..19053707,19053894..19054125, 19055227..19055436,19055519..19055603,19055741..19055900, 19055994..19056070,19056202..19056255,19056666..19056756, 19057330..19057631,19057839..19058437,19058565..19058725, 19058837..19058946,19059077..19059230,19059332..19059487, 19059590..19059762,19059900..19060232,19060325..19060699, 19060805..19060938,19061028..19061255,19061381..19061552, 19061726..19061980,19062078..19062769) /locus_tag="TCM_028878" /product="ABC-2 and Plant PDR ABC-type transporter family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004674" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028881t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016999001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc660t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4321t3" CDS join(19053674..19053707,19053894..19054125, 19055227..19055436,19055519..19055603,19055741..19055900, 19055994..19056070,19056202..19056255,19056666..19056756, 19057330..19057631,19057839..19058437,19058565..19058725, 19058837..19058946,19059077..19059230,19059332..19059487, 19059590..19059762,19059900..19060232,19060325..19060699, 19060805..19060938,19061028..19061255,19061381..19061552, 19061726..19061980,19062078..19062350) /locus_tag="TCM_028878" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG028881t1" /codon_start=1 /product="ABC-2 and Plant PDR ABC-type transporter family protein isoform 2" /protein_id="EOY26917.1" /db_xref="Phytozome:GSVIVT01016999001" /db_xref="TAIR:AT1G59870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U0C4" /translation="MIWVTFHFPSTKALKWAAIEKLPTYDRLRTSIMQSFVDHEIVGN KVEHRAVDVTKLDMDDRQKFIDMLFKVAEEDNERFLKKFRNRIDKVGIRLPTVEVRFE HLTIEADCYIGSRALPTLPNVARNIAESALGMVGIRHAKRTNLTILKDASGIIKPSRM TLLLGPPSSGKTTLLLALAGKLDPSLRVKGEVTYNGYRLNEFVPRKTSAYISQNDVHV GEMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEADVDLFMKATAMEGVESS LFTDYTLKLLGLDICKDTIVGDEMQRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL DSSTTFQIVKCLQQIVHLTEATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRQHI LEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRSKPYRYITVTEFANRFKRFHV GMRLENELSVPFDKSRGHRAALAFQKYSVSKVELLKACWDKEWLLIKRNSFLYVFKTS QIVIVAFIASTVFLRTELHTRTEQDGAIYVGALLFAMITNMFNGIPELSLMINRLPVF YKQRDLLFHPVWTFTLPTFLLRIPISILETTVWMVITYYSIGFAPEASRFFKNFLLVF LIQQMAAGLFRLIAGLCRTMIISNTGGALTLLLVFLLGGFIIPKGQIPNWWEWGYWVS PMSYGFNAFTVNEIYAPRWMNKLASDNVTRLGVAVLRNFDVPNDKNWFWIGVAALLGF TVLFNILFTFALMYLNPLGKRQAIISEETAEELEAGHEGSKEEPRLRRPRSSKDSFPR SLSSADANNSKEMAIRRTSSRTNPNGMSRNDSSLEAVNGVAPKRGMVLPFSPLAMSFD TVNYYVDMPPEMKAQGVAEDRLQLLRGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR KTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRVPKEVS NEEKMIFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDE PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG PLGRNSHKIIEYFESIPGIPKIKEKYNPATWMLEVSSVAAEVRLGIDFAEHYKSSSLH QRNKALVKELSTPPPGAKDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRYFF TLVAALMVGTIFWQVGTKRESTTDLTMIIGAMYAAVLFVGINNCSTVQPVVSIERTVF YRERAAGMYSALPYALAQVFCEIPYIFVETTYYTLIVYAMVSFQWTAAKFFWFFFVNF FSFLYFTYYGMMTVSITPNLQIAAIFASAFYALFNVFSGFFIPRPRIPKWWIWYYWIC PVAWTVYGLIASQYGDTEDTIKAPGIVPDPTVKWYIKDQYGYDADFMGPVAAVLVGFA VFFAFMFAYCIRTLNFQTR" CDS join(19053743..19054125,19055227..19055436, 19055519..19055603,19055741..19055900,19055994..19056070, 19056202..19056255,19056666..19056756,19057330..19057631, 19057839..19058437,19058565..19058725,19058837..19058946, 19059077..19059230,19059332..19059487,19059590..19059762, 19059900..19060232,19060325..19060699,19060805..19060938, 19061028..19061255,19061381..19061552,19061726..19061980, 19062078..19062350) /locus_tag="TCM_028878" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG028881t1" /codon_start=1 /product="ABC-2 and Plant PDR ABC-type transporter family protein isoform 1" /protein_id="EOY26916.1" /db_xref="Phytozome:GSVIVT01016999001" /db_xref="TAIR:AT1G59870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U0C4" /translation="MDSIERARNPSKRTGHSSIGRSLSRSSWSMEDVFSGSKHSRRSS RVDDDEEALKWAAIEKLPTYDRLRTSIMQSFVDHEIVGNKVEHRAVDVTKLDMDDRQK FIDMLFKVAEEDNERFLKKFRNRIDKVGIRLPTVEVRFEHLTIEADCYIGSRALPTLP NVARNIAESALGMVGIRHAKRTNLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALA GKLDPSLRVKGEVTYNGYRLNEFVPRKTSAYISQNDVHVGEMTVKETLDFSARCQGVG TRYDLLSELARREKDAGIFPEADVDLFMKATAMEGVESSLFTDYTLKLLGLDICKDTI VGDEMQRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLT EATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRQHILEFFESCGFKCPERKGTAD FLQEVTSKKDQEQYWADRSKPYRYITVTEFANRFKRFHVGMRLENELSVPFDKSRGHR AALAFQKYSVSKVELLKACWDKEWLLIKRNSFLYVFKTSQIVIVAFIASTVFLRTELH TRTEQDGAIYVGALLFAMITNMFNGIPELSLMINRLPVFYKQRDLLFHPVWTFTLPTF LLRIPISILETTVWMVITYYSIGFAPEASRFFKNFLLVFLIQQMAAGLFRLIAGLCRT MIISNTGGALTLLLVFLLGGFIIPKGQIPNWWEWGYWVSPMSYGFNAFTVNEIYAPRW MNKLASDNVTRLGVAVLRNFDVPNDKNWFWIGVAALLGFTVLFNILFTFALMYLNPLG KRQAIISEETAEELEAGHEGSKEEPRLRRPRSSKDSFPRSLSSADANNSKEMAIRRTS SRTNPNGMSRNDSSLEAVNGVAPKRGMVLPFSPLAMSFDTVNYYVDMPPEMKAQGVAE DRLQLLRGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRVPKEVSNEEKMIFVDEVMELVELDN LKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFESIPGI PKIKEKYNPATWMLEVSSVAAEVRLGIDFAEHYKSSSLHQRNKALVKELSTPPPGAKD LYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRYFFTLVAALMVGTIFWQVGTKR ESTTDLTMIIGAMYAAVLFVGINNCSTVQPVVSIERTVFYRERAAGMYSALPYALAQV FCEIPYIFVETTYYTLIVYAMVSFQWTAAKFFWFFFVNFFSFLYFTYYGMMTVSITPN LQIAAIFASAFYALFNVFSGFFIPRPRIPKWWIWYYWICPVAWTVYGLIASQYGDTED TIKAPGIVPDPTVKWYIKDQYGYDADFMGPVAAVLVGFAVFFAFMFAYCIRTLNFQTR " mRNA join(19054285..19054488,19055227..19055436, 19055519..19055603,19055741..19055900,19055994..19056070, 19056202..19056255,19056666..19056756,19057330..19057631, 19057839..19058437,19058565..19058725,19058837..19058946, 19059077..19059230,19059332..19059487,19059590..19059762, 19059900..19060232,19060325..19060699,19060805..19060938, 19061028..19061255,19061381..19061552,19061726..19061980, 19062078..19063298) /locus_tag="TCM_028878" /product="ABC-2 and Plant PDR ABC-type transporter family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004674" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028881t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016999001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b027929t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4321t3" CDS join(19055360..19055436,19055519..19055603, 19055741..19055900,19055994..19056070,19056202..19056255, 19056666..19056756,19057330..19057631,19057839..19058437, 19058565..19058725,19058837..19058946,19059077..19059230, 19059332..19059487,19059590..19059762,19059900..19060232, 19060325..19060699,19060805..19060938,19061028..19061255, 19061381..19061552,19061726..19061980,19062078..19062350) /locus_tag="TCM_028878" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG028881t1" /codon_start=1 /product="ABC-2 and Plant PDR ABC-type transporter family protein isoform 3" /protein_id="EOY26918.1" /db_xref="Phytozome:GSVIVT01016999001" /db_xref="TAIR:AT1G59870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U0C4" /translation="MVGIRHAKRTNLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLA LAGKLDPSLRVKGEVTYNGYRLNEFVPRKTSAYISQNDVHVGEMTVKETLDFSARCQG VGTRYDLLSELARREKDAGIFPEADVDLFMKATAMEGVESSLFTDYTLKLLGLDICKD TIVGDEMQRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVH LTEATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRQHILEFFESCGFKCPERKGT ADFLQEVTSKKDQEQYWADRSKPYRYITVTEFANRFKRFHVGMRLENELSVPFDKSRG HRAALAFQKYSVSKVELLKACWDKEWLLIKRNSFLYVFKTSQIVIVAFIASTVFLRTE LHTRTEQDGAIYVGALLFAMITNMFNGIPELSLMINRLPVFYKQRDLLFHPVWTFTLP TFLLRIPISILETTVWMVITYYSIGFAPEASRFFKNFLLVFLIQQMAAGLFRLIAGLC RTMIISNTGGALTLLLVFLLGGFIIPKGQIPNWWEWGYWVSPMSYGFNAFTVNEIYAP RWMNKLASDNVTRLGVAVLRNFDVPNDKNWFWIGVAALLGFTVLFNILFTFALMYLNP LGKRQAIISEETAEELEAGHEGSKEEPRLRRPRSSKDSFPRSLSSADANNSKEMAIRR TSSRTNPNGMSRNDSSLEAVNGVAPKRGMVLPFSPLAMSFDTVNYYVDMPPEMKAQGV AEDRLQLLRGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRVPKEVSNEEKMIFVDEVMELVEL DNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFESIP GIPKIKEKYNPATWMLEVSSVAAEVRLGIDFAEHYKSSSLHQRNKALVKELSTPPPGA KDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRYFFTLVAALMVGTIFWQVGT KRESTTDLTMIIGAMYAAVLFVGINNCSTVQPVVSIERTVFYRERAAGMYSALPYALA QVFCEIPYIFVETTYYTLIVYAMVSFQWTAAKFFWFFFVNFFSFLYFTYYGMMTVSIT PNLQIAAIFASAFYALFNVFSGFFIPRPRIPKWWIWYYWICPVAWTVYGLIASQYGDT EDTIKAPGIVPDPTVKWYIKDQYGYDADFMGPVAAVLVGFAVFFAFMFAYCIRTLNFQ TR" mRNA join(<19055871..19055900,19055994..19056070, 19056202..19056255,19056666..19056756,19057330..19057631, 19057839..19058437,19058565..19058725,19058837..19058946, 19059077..19059230,19059332..19059487,19059590..19059762, 19059900..19060232,19060325..19060699,19060805..19060938, 19061028..19061255,19061381..19061552,19061726..19061980, 19062078..>19062107) /locus_tag="TCM_028878" /product="ABC-2 and Plant PDR ABC-type transporter family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004674" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028881t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016999001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc664t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4321t3" CDS join(<19055873..19055900,19055994..19056070, 19056202..19056255,19056666..19056756,19057330..19057631, 19057839..19058437,19058565..19058725,19058837..19058946, 19059077..19059230,19059332..19059487,19059590..19059762, 19059900..19060232,19060325..19060699,19060805..19060938, 19061028..19061255,19061381..19061552,19061726..19061980, 19062078..>19062107) /locus_tag="TCM_028878" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG028881t1" /codon_start=1 /product="ABC-2 and Plant PDR ABC-type transporter family protein isoform 4" /protein_id="EOY26919.1" /db_xref="Phytozome:GSVIVT01016999001" /db_xref="TAIR:AT1G59870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U0C4" /translation="RCQGVGTRYDLLSELARREKDAGIFPEADVDLFMKATAMEGVES SLFTDYTLKLLGLDICKDTIVGDEMQRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG LDSSTTFQIVKCLQQIVHLTEATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRQH ILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRSKPYRYITVTEFANRFKRFH VGMRLENELSVPFDKSRGHRAALAFQKYSVSKVELLKACWDKEWLLIKRNSFLYVFKT SQIVIVAFIASTVFLRTELHTRTEQDGAIYVGALLFAMITNMFNGIPELSLMINRLPV FYKQRDLLFHPVWTFTLPTFLLRIPISILETTVWMVITYYSIGFAPEASRFFKNFLLV FLIQQMAAGLFRLIAGLCRTMIISNTGGALTLLLVFLLGGFIIPKGQIPNWWEWGYWV SPMSYGFNAFTVNEIYAPRWMNKLASDNVTRLGVAVLRNFDVPNDKNWFWIGVAALLG FTVLFNILFTFALMYLNPLGKRQAIISEETAEELEAGHEGSKEEPRLRRPRSSKDSFP RSLSSADANNSKEMAIRRTSSRTNPNGMSRNDSSLEAVNGVAPKRGMVLPFSPLAMSF DTVNYYVDMPPEMKAQGVAEDRLQLLRGVTGAFRPGVLTALMGVSGAGKTTLMDVLAG RKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRVPKEV SNEEKMIFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMD EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS GPLGRNSHKIIEYFESIPGIPKIKEKYNPATWMLEVSSVAAEVRLGIDFAEHYKSSSL HQRNKALVKELSTPPPGAKDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRYF FTLVAALMVGTIFWQVGTKRESTTDLTMIIGAMYAAVLFVGINNCSTVQPVVSIERTV FYRERAAGMYSALPYALAQVFCEIPYIFVETTYYTLIVYAMVSFQWTAAKFFWFFFVN FFSFLYFTYYGMMTVSITPNLQIAAIFASAFYALFNVFSGFFIPRPRIPKWWIWYY" mRNA join(19056041..19056070,19056202..19056255, 19056666..19056756,19057330..19057631,19057839..19058437, 19058565..19058725,19058837..19058946,19059077..19059230, 19059332..19059487,19059590..19059762,19059900..19060232, 19060325..19060699,19060805..19060938,19061028..19061255, 19061381..19061552,19061726..19061930,19062169..19062769) /locus_tag="TCM_028878" /product="ABC-2 and Plant PDR ABC-type transporter family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004674" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028881t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016999001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc609t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4321t3" CDS join(19056065..19056070,19056202..19056255, 19056666..19056756,19057330..19057631,19057839..19058437, 19058565..19058725,19058837..19058946,19059077..19059230, 19059332..19059487,19059590..19059762,19059900..19060232, 19060325..19060699,19060805..19060938,19061028..19061255, 19061381..19061552,19061726..19061930,19062169..19062350) /locus_tag="TCM_028878" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG028881t1" /codon_start=1 /product="ABC-2 and Plant PDR ABC-type transporter family protein isoform 5" /protein_id="EOY26920.1" /db_xref="Phytozome:GSVIVT01016999001" /db_xref="TAIR:AT1G59870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U0C4" /translation="MKATAMEGVESSLFTDYTLKLLGLDICKDTIVGDEMQRGISGGQ KKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEATILMSLLQPAP ETFDLFDDIILLSEGQIVYQGPRQHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQ YWADRSKPYRYITVTEFANRFKRFHVGMRLENELSVPFDKSRGHRAALAFQKYSVSKV ELLKACWDKEWLLIKRNSFLYVFKTSQIVIVAFIASTVFLRTELHTRTEQDGAIYVGA LLFAMITNMFNGIPELSLMINRLPVFYKQRDLLFHPVWTFTLPTFLLRIPISILETTV WMVITYYSIGFAPEASRFFKNFLLVFLIQQMAAGLFRLIAGLCRTMIISNTGGALTLL LVFLLGGFIIPKGQIPNWWEWGYWVSPMSYGFNAFTVNEIYAPRWMNKLASDNVTRLG VAVLRNFDVPNDKNWFWIGVAALLGFTVLFNILFTFALMYLNPLGKRQAIISEETAEE LEAGHEGSKEEPRLRRPRSSKDSFPRSLSSADANNSKEMAIRRTSSRTNPNGMSRNDS SLEAVNGVAPKRGMVLPFSPLAMSFDTVNYYVDMPPEMKAQGVAEDRLQLLRGVTGAF RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQN DIHSPQVTVRESLIYSAFLRVPKEVSNEEKMIFVDEVMELVELDNLKDAIVGLPGVTG LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH QPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFESIPGIPKIKEKYNPATWM LEVSSVAAEVRLGIDFAEHYKSSSLHQRNKALVKELSTPPPGAKDLYFATQYSQSTWG QFKSCLWKQWWTYWRSPDYNLVRYFFTLVAALMVGTIFWQVGTKRESTTDLTMIIGAM YAAVLFVGINNCSTVQPVVSIERTVFYRERAAGMYSALPYALAQVFCEIPYIFVETTY YTLIVYAMVSFQWTAAKFFWFFFVNFFSFLYFTYYGMMTVSITPNLQIAAIFASEDTI KAPGIVPDPTVKWYIKDQYGYDADFMGPVAAVLVGFAVFFAFMFAYCIRTLNFQTR" gene complement(19067610..19071833) /locus_tag="TCM_028879" /note="dbxref CacaoGD:Thecc1EG028879" mRNA complement(join(19067610..19068681,19069727..19069764, 19070520..19070709,19071791..19071833)) /locus_tag="TCM_028879" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046335t1" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS complement(join(19068609..19068681,19069727..19069764, 19070520..19070709,19071791..19071801)) /locus_tag="TCM_028879" /note="paralog of Thecc1EG046335t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26921.1" /translation="MTSRDPRVEKGKEAAYEEEEVPLSVRDQLHIFQQEIQVLTYNLM QRTFDLEAAILSNEKILTEIEFKVVELLLCFARSRRPASEDMYDLSIKSKSCGPHKGH T" mobile_element 19072119..19073488 /note="source:scaffold_8_CACTA_0859 9107 10478" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19073589..19075175) /note="source:CACAO_M_E42289_F15_scaffold_5 1 1586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19088156..19090969) /note="source:scaffold_9_CACTA_0931 252 3057" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19095175..19098121 /note="source:CACAO_M_S_E34046_F60_scaffold_4 3510 6459" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19100751..19113385 /locus_tag="TCM_028881" /note="dbxref CacaoGD:Thecc1EG028881" mRNA join(19100751..19101613,19101958..19102167, 19106390..19106474,19106558..19106583,19106849..19106915, 19107091..19107144,19107263..19107353,19107529..19107830, 19108055..19108653,19108774..19108934,19109111..19109220, 19109338..19109491,19109577..19109797,19110042..19110374, 19110472..19110846,19110943..19111076,19111157..19111384, 19111501..19111591,19111999..19112253,19112345..19113385) /locus_tag="TCM_028881" /product="Pleiotropic drug resistance 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016999001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028878t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016999001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc4421t1" CDS join(19101195..19101613,19101958..19102167, 19106390..19106474,19106558..19106583,19106849..19106915, 19107091..19107144,19107263..19107353,19107529..19107830, 19108055..19108653,19108774..19108934,19109111..19109220, 19109338..19109491,19109577..19109797,19110042..19110374, 19110472..19110846,19110943..19111076,19111157..19111384, 19111501..19111591,19111999..19112253,19112345..19112617) /locus_tag="TCM_028881" /note="paralog of Thecc1EG028878t1" /codon_start=1 /product="Pleiotropic drug resistance 1" /protein_id="EOY26922.1" /db_xref="Phytozome:GSVIVT01016999001" /db_xref="TAIR:AT3G16340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U0C4" /translation="MDGTENGRTSRSRSGHNNLGSSSRSSLSWTTRRMEDVFARASQL SGNSTPAEEEEEALRWAAIEKLPTYKRLRTSIIKSFAESGDPQGQGHGNRHEFAPREV DVRKLEMDDRQKFINAVFKVAEEDNEKFLKRFRNRVDKVGIQLPTVEVTFEHLNIQTD TNISSRALPTLTNVAQNIAELALGMVGIRFSKRTRLNILKDVSGIIKPSRMTLLLGPP ASGKTTLLLALAGKLDPSLEVSGEVSYNGELARREKHAGIFPEAEVDLFMKATAIEGA ESSLATDYILKVLGLDICKDTIVGDEMIRGVSGGQKKRVTTGEMIVGPTKTLLMDEIS TGLDSSTTYQIVKCLQQIAHLTDATIFMSLLQPAPETFDLFDDVVLISEGQIVYQGPK KYVVECFESCGFKCPERKGTADFLQEVTSKQDQAQYWADRSKPYRYIPVPEFANRFKK FHVGVQLANELSVPFNKSQGHKAALVFTRYSVPKLELLRACWDKEVLLIKRNSFFYVF KTSQIIIVAFLASTMFLRTRMHHRNEQDGMLYNGALLFSVITNMFNGYPEISLMIARL PVFFKQRDLLLYPAWAFTIPLVLTKIPMAIFETTAWMAVTYYPIGFAPEAERFFKKML VVLLIHQLAASLFRLIAGVCRTIVVSNTGGMFALMFVVFLGGFTLPRTQIHKWWKWGY WVSPLTYSYNALAVNEFYAPRWMNRLASDNITRLAVAVLESLEVYRNNNWYWIGAGGL LGFIILFNVLFTLALTYPNPPSSPQAVIPEDSADEMESNRETAIRGISSESNSSSTNR NANSTREAAKKGMVLPFTPLAMSFNKVNYHVDMPPEMKVQGVTEDKLQLLREVTGAFR PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKKQETFARVSGYCEQND IHSPQITVRESLIYSAFLRLPKEIDTEEKMIFVDQVMELVELDNLKDGLVGLPGITGL STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ PSIDIFEAFDELLLMKRGGQVIFFGPLGRNSQKIIEYFEAIPGIPKIKETYNPATWML EVSSVAVEARLGIDFAEHYKSSSLHQQNQALVEELSRPPQGAKDLYFTTQYTVSMWGQ FKCCLWKQFKTYWRTPEYNLVRLVFTLVAALIVGSIFWRVGTKMKDATQLTMITGAMY IAVMFLGVTNCQTVQPVIAEIPYVLTQSSYYTLIIFAMINFKWTAKKFFWFLFVNFFT FLYFTFYGMMNVAITPNVHIAAILAAAFYSLFNLFSGFCIPRPRIPGWWVWYYWVCPM AWTIYGLITSQYGEDEHTIKVPGILPDPTVKWYLKHHFAYHYDFMGAVAAVLVGFTVF FAFMFALSIKILNFQIR" mobile_element 19116271..19117087 /note="source:INTACT642F_F365_scaffold_5-int 1 803" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19119216..19123299 /locus_tag="TCM_028882" /note="dbxref CacaoGD:Thecc1EG028882" mRNA join(19119216..19119838,19122636..19122782, 19122864..19122944,19123026..19123299) /locus_tag="TCM_028882" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032496t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage" CDS join(19119719..19119838,19122636..19122782, 19122864..19122944,19123026..19123160) /locus_tag="TCM_028882" /note="paralog of Thecc1EG032496t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26923.1" /translation="MRKNKKNMLELKALIQSLTLIMQTFEDHIIGRILNGLKLQHDEP SVHIKHDVVDAAENNVTRVNDVLDDAVAGDLTLQSVDVEGNHVLEANTVVEATTGEDG NLALVEAEGDHVLQNTPEGNVSRVSSLELSDVHHRDALISNPTEWVRVNMTSKYMASQ " mobile_element 19122084..19122329 /note="source:INTACT700_F304_scaffold_7-int 2700 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19124903..19124986 /note="source:CACAO_Mutator_E1149_scaffold_5 10139 10225" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19125061..19125304 /note="source:CACAO_Mutator_E1149_scaffold_5 10237 10485" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(19125303..19126610) /note="source:INTACT1373F_F385_scaffold_8-int 6099 7457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19149515..19149818 /note="source:CACAO_M_E69938_F9_scaffold_9 3534 3869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19150078..19150228 /note="source:CACAO_M_E69938_F9_scaffold_9 3967 4121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19150366..19150813) /note="source:CACAO_M_E52694_F25_scaffold_8 4002 4462" /mobile_element_type="retrotransposon:LTR/Copia" gene 19161228..19165831 /locus_tag="TCM_028884" /note="dbxref CacaoGD:Thecc1EG028884" mRNA join(19161228..19161564,19163907..19164118, 19164745..19165831) /locus_tag="TCM_028884" /product="Myb-like transcription factor family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016996001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015926t1" /inference="similar to AA sequence:ricco:30146.m003509" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1368t4" CDS join(19161237..19161564,19163907..19164118, 19164745..19165275) /locus_tag="TCM_028884" /note="dbxref ricco:30146.m003509; paralog of Thecc1EG015926t1" /codon_start=1 /product="Myb-like transcription factor family protein" /protein_id="EOY26924.1" /db_xref="TAIR:AT3G16350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGM5" /translation="MTRRCSHCSNNGHNSRTCPTRGGGGSGGVGGGVKLFGVRLTDGS IIKKSASMGNLSSAHYHSSSSAAASPNPDSPLSDHVRDPNHVPDGYLSDDPAAHASTN RRGERKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNFVMSRTPTQVASHAQKYFIRQ SNVTRRKRRSSLFDMVPDDMATDTPPVPEDQVLLPSSQVEEADNANSIPSLNLSLNSE FEHGEAASQETVQETEETMMGSSEFTPMIHGFLPPYLPVPYPFWPPNPAPPHEEKGVE ASQHQVLKPIPLLPKEPVNLDELVGMSQLSIGETENGHREPSPLSLKLLGEPSRQSAF HANAPVGGTDLSKGKTGAIQAV" gene 19168136..19191528 /locus_tag="TCM_028887" /note="dbxref CacaoGD:Thecc1EG028887" mRNA join(19168136..19168640,19187338..19187622, 19188546..19188651,19189531..19189855,19191059..19191528) /locus_tag="TCM_028887" /product="Phosphatase 2C family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016988001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037799t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016988001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1193t2" CDS join(19168272..19168640,19187338..19187622, 19188546..19188651,19189531..19189855,19191059..19191074) /locus_tag="TCM_028887" /note="paralog of Thecc1EG037799t1" /codon_start=1 /product="Phosphatase 2C family protein" /protein_id="EOY26925.1" /db_xref="Phytozome:GSVIVT01016988001" /db_xref="TAIR:AT4G26080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U0B5" /translation="MDSDANSITIITSTDTKGVETENTAAVVTESDSSDTNGNEVITV LEGNKAAKCIGRSNKGISWGYCVEQGRRSTMEDAAAVHPGIMQVSCKDVGGCTAPECK YAMEKSPVHYFGIFDGHGGDQVSSYCANELCEIVAEEWERGSSLDGWNKRWELALCKA FERADNAFKDEALAPKSVGSTALVLIISACQIIAANCGDSRAVLCRGTQAIPLTVDHK LDRADELERITSSGGRILNWGCLRVEGVLSMSRAIGDHDLKPWVISVPEVTFMTRTEE DECLILASDGLWDVLSNEEVVKLARKELRQQRRLVGVNDSTFPPAWFVSQQVLKQALD ACSYDNISVIVVDLKNPRKRCQKKSFKRDVNL" mobile_element complement(19170235..19170319) /note="source:scaffold_5_CACTA_0614 3383 3468" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19170311..19170472 /note="source:scaffold_9_CACTA_0943 5688 5859" /mobile_element_type="transposon:TIR/CACTA" gene complement(19171857..19178908) /locus_tag="TCM_028888" /note="dbxref CacaoGD:Thecc1EG028888" mRNA complement(join(19171857..19172626,19172801..19172860, 19172986..19173039,19173280..19173377,19173461..19173562, 19174139..19174416,19174521..19174787,19175778..19175835, 19176321..19176351,19176424..19176561,19176684..19176815, 19177137..19177281,19177726..19178009,19178120..19178351, 19178450..19178908)) /locus_tag="TCM_028888" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(19172326..19172626,19172801..19172860, 19172986..19173039,19173280..19173377,19173461..19173562, 19174139..19174416,19174521..19174787,19175778..19175835, 19176321..19176351,19176424..19176561,19176684..19176815, 19177137..19177281,19177726..19178009,19178120..19178351, 19178450..19178705)) /locus_tag="TCM_028888" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26926.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B7M7" /translation="MGNLSTDVDWWLLKEVFDKFSDMVDVFIPRQKANAEAKYAFVRY RETNELKRAIQRGNGKWIYGKKIRVSEAEKPRDKRELLNENRNNGNSESRRRFCEKTA KNNDCGRDVKTILIEKDELDWLECSAQGELRRPLCFKAIQNSLFCQGVNARVRPTRVN LFWYYKVWVKIEEIPLHIWHEESFRTIRNVCGRFLQTDQDTMKKWRLNYASILVEVRS LQDIFPFTPIKVNGKGFLVKASIKEVLSCEAISRCNEMPRNETEGPKLWEWVVKMKKG KARSKEKKDRLSGDKEIIKVLRGQDEGQSKKCGYKLHVDDEKDELCFSENLTPSKGDT PLKLEAKLGMKKGEGSVDTNNENELIFEMSNLMGLEFVKGKEEVLKYFTGIEKVKTEK AHSKGLGRNKKKRAGINSLDVALEMGGSIAELIANRVRGVVEEIIDRNQFAFMQGRQI MDYSLIANEVVDAFKKGNRGLMFKIDFKKAYDCVSWSFLDLIMRKMGFGDNGGYGLKN VSVRPWSLSCMLKKAEANGKCKGVRIEKRGFHISHLQFADNTLLFYNNELDELMVLRR ILKCFQSVSRLKINYHKSQLLSIGIKEQMVEKWEDSSIVEWAMVKTYSSRRTSGLKAF CLLMHFLGFMRSVQTKMRSQWYALGDTLKEVQLSKEMEDALIWKCETNGRCGETWKIW GMWCNLFNIKNEVVFEVKEWDKKQCWELVNSAKGYLGPAGIGGIIRNEFEEVKISFSK PISMVDSAQAEIMAMKEAILIFSTSKWKETHLLMIESDASNVINWVNDHTQVPWRFRK WMILIERIEEQLE" gene 19179233..19179824 /locus_tag="TCM_028889" /note="dbxref CacaoGD:Thecc1EG028889" mRNA 19179233..19179824 /locus_tag="TCM_028889" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS 19179546..19179716 /locus_tag="TCM_028889" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26927.1" /translation="MGNSFNCNSNAQTTVSTYVAIEWQCSAKSFQTQRLFFRFFNSIG AIPSQFDQFLCQ" mobile_element 19199665..19202759 /note="source:CACAO_M_E49209_F15_scaffold_6 1 3095" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19204211..19205934 /locus_tag="TCM_028890" /note="dbxref CacaoGD:Thecc1EG028890" mRNA join(19204211..19204357,19204706..19204836, 19204951..19205019,19205196..19205267,19205491..19205563, 19205672..19205934) /locus_tag="TCM_028890" /product="Histidine phosphotransfer protein" /inference="alignment:exonerate- protein:2:ricco:30146.m003508" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037223t2" /inference="similar to AA sequence:ricco:30146.m003508" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4273t2" CDS join(19204298..19204357,19204706..19204836, 19204951..19205019,19205196..19205267,19205491..19205563, 19205672..19205722) /locus_tag="TCM_028890" /note="dbxref ricco:30146.m003508; paralog of Thecc1EG037223t2" /codon_start=1 /product="Histidine phosphotransfer protein" /protein_id="EOY26928.1" /db_xref="TAIR:AT3G16360.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGM6" /translation="MERNPMRRQLAIMRQSLFDQGYLDEQFIQLEELQDDANPNFVEE VVTLYYRDSARIILNLEQALERKPFDFNKLDGLMHQFKGSSSSIGAKKVKAECTLFRE YCKSGNGEGCTRAFQQLKREYATLKRKLEAYFQLARQAGPAETACCRKE" mobile_element complement(19206473..19206570) /note="source:INTACT296_F13_scaffold_9-int 13171 13242" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19207176..19214624 /locus_tag="TCM_028891" /note="dbxref CacaoGD:Thecc1EG028891" mRNA join(19207176..19207262,19207631..19208894, 19209462..19209530,19209801..19209908,19209999..19210179, 19210268..19210344,19210467..19210586,19210987..19211092, 19211703..19211789,19211926..19211994,19212086..19212157, 19212256..19212399,19212501..19213210) /locus_tag="TCM_028891" /product="Hydroxyproline-rich glycoprotein family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30146.m003507" /inference="similar to AA sequence:Phytozome:Glyma07g01830.3" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc816t16" mRNA join(19207393..19208894,19209801..19209908, 19209999..19210179,19210268..19210344,19210467..19210586, 19210987..19211092,19211703..19211789,19211926..19211994, 19212086..19212157,19212256..19212399,19212501..19214624) /locus_tag="TCM_028891" /product="Hydroxyproline-rich glycoprotein family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30146.m003507" /inference="similar to AA sequence:Phytozome:Glyma07g01830.3" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:PASA:2:TSA:puevd3b027940t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc816t16" CDS join(19208014..19208894,19209462..19209530, 19209801..19209908,19209999..19210179,19210268..19210344, 19210467..19210586,19210987..19211092,19211703..19211789, 19211926..19211994,19212086..19212157,19212256..19212399, 19212501..19212644) /locus_tag="TCM_028891" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein isoform 1" /protein_id="EOY26929.1" /db_xref="Phytozome:Glyma07g01830.3" /db_xref="TAIR:AT1G79730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGM7" /translation="MASYRPFTPQSFPPPPPQNQNPLPPQQQQQQQQHYGQNYNQMNP NSNYHYPPSRPPQQQQHPPPPPPTQQQYSYPPPPPPPPDSSYPPPPPPPLPTMPQNAI NSQPPMYYPPSQYPSQYGNPAMQPAQPPPPPPPPSSPGSAIPPPPPPSSPPPPPPPKE SVGDKGLNERSQGGNRDFLGSGRREHGHSNHAAGVRDQKPMMPPVKKPNGPAGRVETE EERRLRKKREFEKQRQEEKHRQQMKESQKTQMMPSGKGHGSMVGSRMGDRRATPFLSG ERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTKYTITSLEKMYKPKL FVEPDLGIPLDLLDLSVYNPPSVRPSLAPEDAELLHDDEAVTPIKKDGIRRKERPTDK GVSWLVKTQYISPLSMESTKQSLTEKQAKELRELKGGRNILENLNNRERQIKEIEASF EASKLRPVHATNKNLEPVEVMPLLPDFDRYNDQFVMVAFDGAPTADSEIFSKLDDSVR DEHESRAIMKSYLAASSDPANPEKFLAYMVPSLDELSKGMYDEHEDVSYSWVREYNWD VRGDDANDPTTYLVSFDEGEARYVPLPTKLNLRKKRAREGRTGDEIEHFPIPARITVR RRSTVAAIELKEPEVYTSSRGGMSSSKIGRLDAEDGLGRSHKLARHHDVDQYSGAEDD LSE" CDS join(19208014..19208894,19209801..19209908, 19209999..19210179,19210268..19210344,19210467..19210586, 19210987..19211092,19211703..19211789,19211926..19211994, 19212086..19212157,19212256..19212399,19212501..19212644) /locus_tag="TCM_028891" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein isoform 3" /protein_id="EOY26931.1" /db_xref="Phytozome:Glyma07g01830.3" /db_xref="TAIR:AT1G79730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGM7" /translation="MASYRPFTPQSFPPPPPQNQNPLPPQQQQQQQQHYGQNYNQMNP NSNYHYPPSRPPQQQQHPPPPPPTQQQYSYPPPPPPPPDSSYPPPPPPPLPTMPQNAI NSQPPMYYPPSQYPSQYGNPAMQPAQPPPPPPPPSSPGSAIPPPPPPSSPPPPPPPKE SVGDKGLNERSQGGNRDFLGSGRREHGHSNHAAGVRDQKPMMPPVKKPNGPAGRVETE EERRLRKKREFEKQRQEEKHRQQMKESQKTQMMPSGKGHGSMVGSRMGDRRATPFLSG ERIENRLKKPTTFLCKLKFTKYTITSLEKMYKPKLFVEPDLGIPLDLLDLSVYNPPSV RPSLAPEDAELLHDDEAVTPIKKDGIRRKERPTDKGVSWLVKTQYISPLSMESTKQSL TEKQAKELRELKGGRNILENLNNRERQIKEIEASFEASKLRPVHATNKNLEPVEVMPL LPDFDRYNDQFVMVAFDGAPTADSEIFSKLDDSVRDEHESRAIMKSYLAASSDPANPE KFLAYMVPSLDELSKGMYDEHEDVSYSWVREYNWDVRGDDANDPTTYLVSFDEGEARY VPLPTKLNLRKKRAREGRTGDEIEHFPIPARITVRRRSTVAAIELKEPEVYTSSRGGM SSSKIGRLDAEDGLGRSHKLARHHDVDQYSGAEDDLSE" mRNA join(19208367..19208894,19209462..19209530, 19209801..19209908,19209999..19210179,19210268..19210344, 19210467..19210586,19210987..19211092,19211703..19211789, 19211926..19211994,19212086..19212157,19212256..19212399, 19212501..19213589,19213673..19213743) /locus_tag="TCM_028891" /product="Hydroxyproline-rich glycoprotein family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30146.m003507" /inference="similar to AA sequence:Phytozome:Glyma07g01830.3" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc681t21; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc816t16; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc740t30" CDS join(19208383..19208894,19209462..19209530, 19209801..19209908,19209999..19210179,19210268..19210344, 19210467..19210586,19210987..19211092,19211703..19211789, 19211926..19211994,19212086..19212157,19212256..19212399, 19212501..19212644) /locus_tag="TCM_028891" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein isoform 2" /protein_id="EOY26930.1" /db_xref="Phytozome:Glyma07g01830.3" /db_xref="TAIR:AT1G79730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGM7" /translation="MQPAQPPPPPPPPSSPGSAIPPPPPPSSPPPPPPPKESVGDKGL NERSQGGNRDFLGSGRREHGHSNHAAGVRDQKPMMPPVKKPNGPAGRVETEEERRLRK KREFEKQRQEEKHRQQMKESQKTQMMPSGKGHGSMVGSRMGDRRATPFLSGERIENRL KKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTKYTITSLEKMYKPKLFVEPDLG IPLDLLDLSVYNPPSVRPSLAPEDAELLHDDEAVTPIKKDGIRRKERPTDKGVSWLVK TQYISPLSMESTKQSLTEKQAKELRELKGGRNILENLNNRERQIKEIEASFEASKLRP VHATNKNLEPVEVMPLLPDFDRYNDQFVMVAFDGAPTADSEIFSKLDDSVRDEHESRA IMKSYLAASSDPANPEKFLAYMVPSLDELSKGMYDEHEDVSYSWVREYNWDVRGDDAN DPTTYLVSFDEGEARYVPLPTKLNLRKKRAREGRTGDEIEHFPIPARITVRRRSTVAA IELKEPEVYTSSRGGMSSSKIGRLDAEDGLGRSHKLARHHDVDQYSGAEDDLSE" gene complement(19212425..19228531) /locus_tag="TCM_028892" /note="dbxref CacaoGD:Thecc1EG028892" mRNA complement(join(19212425..19213589,19213673..19213786, 19213901..19213980,19214188..19214268,19214550..19214626, 19215404..19215515,19215626..19215701,19216618..19217492, 19217579..19217687,19217828..19217901,19218199..19218578, 19219063..19219777,19219905..19219991,19220964..19221017, 19222327..19222515,19223263..19223322,19223496..19223654, 19224047..19224144,19224381..19224435,19224615..19224677, 19224941..19225514,19228002..19228531)) /locus_tag="TCM_028892" /product="MMS19 nucleotide excision repair protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30146.m003506" /inference="similar to AA sequence:ricco:30146.m003506" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:PASA:2:TSA:puevd3b027941t1a2; alternateUTRof:Thecc1EG028892t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc823t21" mRNA complement(join(19212503..19213589,19213718..19213786, 19213901..19213980,19214188..19214268,19214550..19214626, 19215404..19215515,19215626..19215701,19216618..19217492, 19217579..19217687,19217828..19217901,19218199..19218578, 19219063..19219777,19219905..19219991,19220964..19221017, 19222327..19222515,19223263..19223322,19223496..19223654, 19224047..19224144,19224381..19224435,19224615..19224677, 19224941..19225068)) /locus_tag="TCM_028892" /product="MMS19 nucleotide excision repair protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30146.m003506" /inference="similar to AA sequence:ricco:30146.m003506" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc816t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc816t8" mRNA complement(join(19213560..19213589,19213673..19213786, 19213901..19213980,19214188..19214268,19215404..19215515, 19215626..19215701,19216618..19217492,19217579..19217687, 19217828..19217901,19218199..19218578,19219063..19219777, 19219905..19219991,19220964..19221017,19222327..19222515, 19223263..19223322,19223496..19223654,19224047..19224144, 19224381..19224435,19224615..19224677,19224941..19225110)) /locus_tag="TCM_028892" /product="MMS19 nucleotide excision repair protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30146.m003506" /inference="similar to AA sequence:ricco:30146.m003506" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc740t21; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc823t21; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc816t8" CDS complement(join(19213753..19213786,19213901..19213980, 19214188..19214268,19214550..19214626,19215404..19215515, 19215626..19215701,19216618..19217492,19217579..19217687, 19217828..19217901,19218199..19218578,19219063..19219777, 19219905..19219991,19220964..19221017,19222327..19222515, 19223263..19223322,19223496..19223654,19224047..19224144, 19224381..19224435,19224615..19224677,19224941..19225012)) /locus_tag="TCM_028892" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30146.m003506" /codon_start=1 /product="MMS19 nucleotide excision repair protein, putative isoform 1" /protein_id="EOY26932.1" /db_xref="TAIR:AT5G48120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVF8" /translation="MAETSQLIQGIESFVDSTRSPTQQAASLDVIASLLKNNQLTIET LVREMEGYLTTADNIIRARGILLLGEVLMHLASKPLDDATIHSLIQFFTDRLADWRAL RGALVGCLALLRRKSSGGIVSETDAKAVAESYLQNLQVQSLGKYDRKLCFELLLCLLE RYPKAIASLGDNLIYGICEAVDGEKDPHCLMLIFHIIEILPQLFPDPLGPFTSFAHDL FENLSYYFPVHFTHPKGEDVNIKRDDLARALMLAFSSTPLFEPFAIPLLIEKLSSSLP SAKVDSLRYLSDCTVKYGVDRMAKHGEALWSSLKDAVFTSLDGVLSFTPESLEGLCLP ENEIAAEALSLLQKLIVQNTNFFLDLIVVDEDINMIFNMISSYKSYHGIPAQSKQRLH AVGCILSASVKASTASCNRVFECFFSRLMDILGLCVRNSSGNLSSDDSIMIPKRYNHG ALYLSIELLSACRDVIASSETIIAASAHTEETWSYLLRSFSSSLTKAFCSASICTSED SHDADVYFGVKGLLILATFPEGYLLISKPVFEKILMTFVSIVTVDYSNTLLWKLALKA LVQIGSFIEKCHESEKEPSYLGLVVEKIVSFSSLGDFSIPFPLRLEALSEIGTSGKSY MLKVVEGLEEAIYANLSEVYVHGSSNSAEIVTQLLKCYSDKVIPWIQCAKGFDEVPLQ FAIHIWNQIELSMVFNATQTNKIEVLDVMMKAMKLAVASCSEENQNIIVQKSYHILSS STSFPLKELFRQESFQIVQVDNSSSRDEWILSLFAAVVIAVHPETYVPNIKPLLYLFM TTLLKGNVVTAQALGSVVNKLGLESAGVQTDCTLEEVMDIILNLSLWIFHSNSSADIQ AKMTSAHDISLINLCSSIGSCTSLQIHAIVGLAWIGKGLLMRGHEKVKDITMIFLRCL QPNGRAEILHQEEGISESNNELDLHHSVMKSAADAFQILMGDSEVCLNRGFHAVIRPL YKQRFFSTMMPILQSLIMKSEPLSRPLLLRASAHIIVDTPLIVVLSDAKKIIPMLLDG LSALSNDILDKDVIYGLLLVLSGILMDKNGQEAVSDSAHTITNRLIELIQYPHMMLVR ETAIQCLVAISGLSYARVYPMRTQVLQAIAKALDDPKRAVRQEAVRCRQAWASIASRS LHF" CDS complement(join(19213753..19213786,19213901..19213980, 19214188..19214268,19214550..19214626,19215404..19215515, 19215626..19215701,19216618..19217492,19217579..19217687, 19217828..19217901,19218199..19218578,19219063..19219777, 19219905..19219991,19220964..19221017,19222327..19222515, 19223263..19223322,19223496..19223654,19224047..19224144, 19224381..19224435,19224615..19224677,19224941..19225012)) /locus_tag="TCM_028892" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30146.m003506" /codon_start=1 /product="MMS19 nucleotide excision repair protein, putative isoform 1" /protein_id="EOY26933.1" /db_xref="TAIR:AT5G48120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVF8" /translation="MAETSQLIQGIESFVDSTRSPTQQAASLDVIASLLKNNQLTIET LVREMEGYLTTADNIIRARGILLLGEVLMHLASKPLDDATIHSLIQFFTDRLADWRAL RGALVGCLALLRRKSSGGIVSETDAKAVAESYLQNLQVQSLGKYDRKLCFELLLCLLE RYPKAIASLGDNLIYGICEAVDGEKDPHCLMLIFHIIEILPQLFPDPLGPFTSFAHDL FENLSYYFPVHFTHPKGEDVNIKRDDLARALMLAFSSTPLFEPFAIPLLIEKLSSSLP SAKVDSLRYLSDCTVKYGVDRMAKHGEALWSSLKDAVFTSLDGVLSFTPESLEGLCLP ENEIAAEALSLLQKLIVQNTNFFLDLIVVDEDINMIFNMISSYKSYHGIPAQSKQRLH AVGCILSASVKASTASCNRVFECFFSRLMDILGLCVRNSSGNLSSDDSIMIPKRYNHG ALYLSIELLSACRDVIASSETIIAASAHTEETWSYLLRSFSSSLTKAFCSASICTSED SHDADVYFGVKGLLILATFPEGYLLISKPVFEKILMTFVSIVTVDYSNTLLWKLALKA LVQIGSFIEKCHESEKEPSYLGLVVEKIVSFSSLGDFSIPFPLRLEALSEIGTSGKSY MLKVVEGLEEAIYANLSEVYVHGSSNSAEIVTQLLKCYSDKVIPWIQCAKGFDEVPLQ FAIHIWNQIELSMVFNATQTNKIEVLDVMMKAMKLAVASCSEENQNIIVQKSYHILSS STSFPLKELFRQESFQIVQVDNSSSRDEWILSLFAAVVIAVHPETYVPNIKPLLYLFM TTLLKGNVVTAQALGSVVNKLGLESAGVQTDCTLEEVMDIILNLSLWIFHSNSSADIQ AKMTSAHDISLINLCSSIGSCTSLQIHAIVGLAWIGKGLLMRGHEKVKDITMIFLRCL QPNGRAEILHQEEGISESNNELDLHHSVMKSAADAFQILMGDSEVCLNRGFHAVIRPL YKQRFFSTMMPILQSLIMKSEPLSRPLLLRASAHIIVDTPLIVVLSDAKKIIPMLLDG LSALSNDILDKDVIYGLLLVLSGILMDKNGQEAVSDSAHTITNRLIELIQYPHMMLVR ETAIQCLVAISGLSYARVYPMRTQVLQAIAKALDDPKRAVRQEAVRCRQAWASIASRS LHF" mRNA complement(join(19213774..19213786,19213901..19214268, 19214550..19214626,19215404..19215515,19215626..19215701, 19216618..19217492,19217579..19217687,19217828..19217901, 19218199..19218578,19219063..19219777,19219905..19219991, 19220964..19221017,19222327..19222515,19223263..19223322, 19223496..19223654,19224047..19224144,19224381..19224435, 19224615..19224677,19224941..19225110)) /locus_tag="TCM_028892" /product="MMS19 nucleotide excision repair protein, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:30146.m003506" /inference="similar to AA sequence:ricco:30146.m003506" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc681t17; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc823t21; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc816t8" mRNA complement(join(19213960..19214626,19215404..19215515, 19215626..19215701,19216618..19217492,19217579..19217687, 19217828..19217901,19218199..19218578,19219063..19219777, 19219905..19219991,19220964..19221017,19222327..19222515, 19223263..19223322,19223496..19223654,19224047..19224144, 19224381..19224435,19224615..19224677,19224941..19225068)) /locus_tag="TCM_028892" /product="MMS19 nucleotide excision repair protein, putative isoform 5" /inference="alignment:exonerate- protein:2:ricco:30146.m003506" /inference="similar to AA sequence:ricco:30146.m003506" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc816t15; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc823t21; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc816t8" CDS complement(join(19214113..19214268,19214550..19214626, 19215404..19215515,19215626..19215701,19216618..19217492, 19217579..19217687,19217828..19217901,19218199..19218578, 19219063..19219777,19219905..19219991,19220964..19221017, 19222327..19222515,19223263..19223322,19223496..19223654, 19224047..19224144,19224381..19224435,19224615..19224677, 19224941..19225012)) /locus_tag="TCM_028892" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30146.m003506" /codon_start=1 /product="MMS19 nucleotide excision repair protein, putative isoform 4" /protein_id="EOY26935.1" /db_xref="TAIR:AT5G48120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVF8" /translation="MAETSQLIQGIESFVDSTRSPTQQAASLDVIASLLKNNQLTIET LVREMEGYLTTADNIIRARGILLLGEVLMHLASKPLDDATIHSLIQFFTDRLADWRAL RGALVGCLALLRRKSSGGIVSETDAKAVAESYLQNLQVQSLGKYDRKLCFELLLCLLE RYPKAIASLGDNLIYGICEAVDGEKDPHCLMLIFHIIEILPQLFPDPLGPFTSFAHDL FENLSYYFPVHFTHPKGEDVNIKRDDLARALMLAFSSTPLFEPFAIPLLIEKLSSSLP SAKVDSLRYLSDCTVKYGVDRMAKHGEALWSSLKDAVFTSLDGVLSFTPESLEGLCLP ENEIAAEALSLLQKLIVQNTNFFLDLIVVDEDINMIFNMISSYKSYHGIPAQSKQRLH AVGCILSASVKASTASCNRVFECFFSRLMDILGLCVRNSSGNLSSDDSIMIPKRYNHG ALYLSIELLSACRDVIASSETIIAASAHTEETWSYLLRSFSSSLTKAFCSASICTSED SHDADVYFGVKGLLILATFPEGYLLISKPVFEKILMTFVSIVTVDYSNTLLWKLALKA LVQIGSFIEKCHESEKEPSYLGLVVEKIVSFSSLGDFSIPFPLRLEALSEIGTSGKSY MLKVVEGLEEAIYANLSEVYVHGSSNSAEIVTQLLKCYSDKVIPWIQCAKGFDEVPLQ FAIHIWNQIELSMVFNATQTNKIEVLDVMMKAMKLAVASCSEENQNIIVQKSYHILSS STSFPLKELFRQESFQIVQVDNSSSRDEWILSLFAAVVIAVHPETYVPNIKPLLYLFM TTLLKGNVVTAQALGSVVNKLGLESAGVQTDCTLEEVMDIILNLSLWIFHSNSSADIQ AKMTSAHDISLINLCSSIGSCTSLQIHAIVGLAWIGKGLLMRGHEKVKDITMIFLRCL QPNGRAEILHQEEGISESNNELDLHHSVMKSAADAFQILMGDSEVCLNRGFHAVIRPL YKQRFFSTMMPILQSLIMKSEPLSRPLLLRASAHIIVDTPLIVVLSDAKKIIPMLLDG LSALSNDILDKDVIYGLLLVLSGILMDKNGQEAVSDSAHTITNRLIELIQYPHMMLVR ETAIQCLVAISGLSYARVYPMRTQVVNHGEHLLFWNILLPHFGCKMFL" CDS complement(join(19214258..19214268,19215404..19215515, 19215626..19215701,19216618..19217492,19217579..19217687, 19217828..19217901,19218199..19218578,19219063..19219777, 19219905..19219991,19220964..19221017,19222327..19222515, 19223263..19223322,19223496..19223654,19224047..19224144, 19224381..19224435,19224615..19224677,19224941..19225012)) /locus_tag="TCM_028892" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30146.m003506" /codon_start=1 /product="MMS19 nucleotide excision repair protein, putative isoform 3" /protein_id="EOY26934.1" /db_xref="TAIR:AT5G48120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVF8" /translation="MAETSQLIQGIESFVDSTRSPTQQAASLDVIASLLKNNQLTIET LVREMEGYLTTADNIIRARGILLLGEVLMHLASKPLDDATIHSLIQFFTDRLADWRAL RGALVGCLALLRRKSSGGIVSETDAKAVAESYLQNLQVQSLGKYDRKLCFELLLCLLE RYPKAIASLGDNLIYGICEAVDGEKDPHCLMLIFHIIEILPQLFPDPLGPFTSFAHDL FENLSYYFPVHFTHPKGEDVNIKRDDLARALMLAFSSTPLFEPFAIPLLIEKLSSSLP SAKVDSLRYLSDCTVKYGVDRMAKHGEALWSSLKDAVFTSLDGVLSFTPESLEGLCLP ENEIAAEALSLLQKLIVQNTNFFLDLIVVDEDINMIFNMISSYKSYHGIPAQSKQRLH AVGCILSASVKASTASCNRVFECFFSRLMDILGLCVRNSSGNLSSDDSIMIPKRYNHG ALYLSIELLSACRDVIASSETIIAASAHTEETWSYLLRSFSSSLTKAFCSASICTSED SHDADVYFGVKGLLILATFPEGYLLISKPVFEKILMTFVSIVTVDYSNTLLWKLALKA LVQIGSFIEKCHESEKEPSYLGLVVEKIVSFSSLGDFSIPFPLRLEALSEIGTSGKSY MLKVVEGLEEAIYANLSEVYVHGSSNSAEIVTQLLKCYSDKVIPWIQCAKGFDEVPLQ FAIHIWNQIELSMVFNATQTNKIEVLDVMMKAMKLAVASCSEENQNIIVQKSYHILSS STSFPLKELFRQESFQIVQVDNSSSRDEWILSLFAAVVIAVHPETYVPNIKPLLYLFM TTLLKGNVVTAQALGSVVNKLGLESAGVQTDCTLEEVMDIILNLSLWIFHSNSSADIQ AKMTSAHDISLINLCSSIGSCTSLQIHAIVGLAWIGKGLLMRGHEKVKDITMIFLRCL QPNGRAEILHQEEGISESNNELDLHHSVMKSAADAFQILMGDSEVCLNRGFHAVIRPL YKQRFFSTMMPILQSLIMKSEPLSRPLLLRASAHIIVDTPLIVVLSDAKKIIPMLLDG LSALSNDILDKDVIYGLLLVLSGILMDKNACS" CDS complement(join(19214331..19214626,19215404..19215515, 19215626..19215701,19216618..19217492,19217579..19217687, 19217828..19217901,19218199..19218578,19219063..19219777, 19219905..19219991,19220964..19221017,19222327..19222515, 19223263..19223322,19223496..19223654,19224047..19224144, 19224381..19224435,19224615..19224677,19224941..19225012)) /locus_tag="TCM_028892" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30146.m003506" /codon_start=1 /product="MMS19 nucleotide excision repair protein, putative isoform 5" /protein_id="EOY26936.1" /db_xref="TAIR:AT5G48120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVF8" /translation="MAETSQLIQGIESFVDSTRSPTQQAASLDVIASLLKNNQLTIET LVREMEGYLTTADNIIRARGILLLGEVLMHLASKPLDDATIHSLIQFFTDRLADWRAL RGALVGCLALLRRKSSGGIVSETDAKAVAESYLQNLQVQSLGKYDRKLCFELLLCLLE RYPKAIASLGDNLIYGICEAVDGEKDPHCLMLIFHIIEILPQLFPDPLGPFTSFAHDL FENLSYYFPVHFTHPKGEDVNIKRDDLARALMLAFSSTPLFEPFAIPLLIEKLSSSLP SAKVDSLRYLSDCTVKYGVDRMAKHGEALWSSLKDAVFTSLDGVLSFTPESLEGLCLP ENEIAAEALSLLQKLIVQNTNFFLDLIVVDEDINMIFNMISSYKSYHGIPAQSKQRLH AVGCILSASVKASTASCNRVFECFFSRLMDILGLCVRNSSGNLSSDDSIMIPKRYNHG ALYLSIELLSACRDVIASSETIIAASAHTEETWSYLLRSFSSSLTKAFCSASICTSED SHDADVYFGVKGLLILATFPEGYLLISKPVFEKILMTFVSIVTVDYSNTLLWKLALKA LVQIGSFIEKCHESEKEPSYLGLVVEKIVSFSSLGDFSIPFPLRLEALSEIGTSGKSY MLKVVEGLEEAIYANLSEVYVHGSSNSAEIVTQLLKCYSDKVIPWIQCAKGFDEVPLQ FAIHIWNQIELSMVFNATQTNKIEVLDVMMKAMKLAVASCSEENQNIIVQKSYHILSS STSFPLKELFRQESFQIVQVDNSSSRDEWILSLFAAVVIAVHPETYVPNIKPLLYLFM TTLLKGNVVTAQALGSVVNKLGLESAGVQTDCTLEEVMDIILNLSLWIFHSNSSADIQ AKMTSAHDISLINLCSSIGSCTSLQIHAIVGLAWIGKGLLMRGHEKVKDITMIFLRCL QPNGRAEILHQEEGISESNNELDLHHSVMKSAADAFQILMGDSEVCLNRGFHAVIRPL YKQRFFSTMMPILQSLIMKSEPLSRPLLLRASAHIIVDTPLIVVLSDAKKIIPMLLDG LSALSNDILDKDVIYGLLLVLSGILMDKNGQEAVSDSAHTITNRLIELIQYPHMMVID TFTRRMNVVVYPLVLLSRLLFYEIAFWQWSISLPPLPPATPSPPTQRKGGKKKPSSFH IYLTELYFISS" mobile_element 19228280..19230701 /note="source:CACAO_M_E41832_F19_scaffold_5 1 2456" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19235566..19242016) /locus_tag="TCM_028895" /note="dbxref CacaoGD:Thecc1EG028895" mRNA complement(join(19235566..19236161,19236255..19237203, 19238139..19238249,19238583..19239006,19241590..19242016)) /locus_tag="TCM_028895" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03810.1" /inference="similar to AA sequence:ricco:30146.m003505" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc771t1" CDS complement(join(19235905..19236161,19236255..19237203, 19238139..19238249,19238583..19238777)) /locus_tag="TCM_028895" /note="dbxref ricco:30146.m003505" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26937.1" /db_xref="TAIR:AT4G12540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZD8" /translation="MRRTEWKAKSVRKPLRDVSNNNSTRSFSKSEIPKKKMVDEDKIQ NHDSLDRLLLVQSDLSSLLRQIDELVAEAFKLKATSENGRKEIESFTNVLSEMLSSLK PWVPRFQKVLSSPSAGDYKDQPGQRLESETVPFVNVNEKECFDVGSPEETTLDSLISP SPLVSWRVADCNVERGRQLFLLTPLPMSKALSSKRRDSSKSVFERIASKSTVELPSFL NIPRDENDDLLEGVAVKPTPIKPSDPFVAETEKTLKCGFVSSPVLSRRNHSMLVMTPC LKMSPPKSCVLLEPIHKSSHRGDYGVRKSTPFPVGISNSAFSESSGSEATADLTLKYP ELLGIKQTYKSEIGKKELESSPTWLFSPPKSCILLEPPDEKSMDNVASDHHLHIPCAL NQQMELPLTKGNDVTDGVQQNKAFNEENTCNNLALVQSTPMWKEPESTMQTGKRPGES TLKKELWTKFEAVSTFGLRYNASAVQRTARKGFLDMLDEVSCDDENPIPDGLR" mobile_element 19237235..19237302 /note="source:CACAO_M_E86361_F7_scaffold_15 7479 7545" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19240413..19240476) /note="source:INTACT135F_F90_scaffold_2-int 12831 12892" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19244616..19245141) /note="source:INTACT566_F257_scaffold_7-int 244 739" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19245141..19247902 /note="source:INTACT293_F14_scaffold_5-int 8680 11440" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19248013..19250998 /note="source:INTACT249_F59_scaffold_7-int 2059 5053" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19251002..19252147) /note="source:INTACT566_F257_scaffold_7-int 4271 5416" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19252153..19254482) /note="source:INTACT566_F257_scaffold_7-int 1 2339" /mobile_element_type="retrotransposon:LTR/Copia" gene 19256882..19258976 /locus_tag="TCM_028897" /note="dbxref CacaoGD:Thecc1EG028897" mRNA join(19256882..19257370,19257486..19257739, 19257861..19258976) /locus_tag="TCM_028897" /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s19100.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011883t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s19100.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07246t00001" CDS join(19256996..19257370,19257486..19257739, 19257861..19258221) /locus_tag="TCM_028897" /note="paralog of Thecc1EG011883t1" /codon_start=1 /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein" /protein_id="EOY26938.1" /db_xref="Phytozome:POPTR_0001s19100.1" /db_xref="TAIR:AT3G21360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIG0" /translation="MADQVQYFMETQLPNHQKHYNSFTFPSLLSPNPPSTPSSLSLFT KAIKSQKPFLDSLLLKAGALLFRGFPVETAKDFNDVVEAFGFEELPYVGGAAPRTNVV GRVFTANESPADQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIIYERMK DKYPEFVWRLEEHGLIYTRVLGEGDDPSSPIGRGWKSTFLTTDKSVAEERAAKLGMKL EWIGDGVKTIMGPIPAVKYDKSRQRKIWFNSMVAAYTGWEDERNDPVKAVTFGDGKPL PADIIYDCLKILEEECVAIPWKKGDVLLIDNWAVLHSRRPFDPPRRVLASLCK" gene complement(19259511..19267967) /locus_tag="TCM_028898" /note="dbxref CacaoGD:Thecc1EG028898" mRNA complement(join(19259511..19259986,19260519..19260626, 19261566..19261713,19261800..19261897,19261986..19262137, 19263060..19263165,19263269..19263358,19263444..19263589, 19264839..19265138,19265871..19265948,19266796..19267915)) /locus_tag="TCM_028898" /product="Kinase family protein / peptidoglycan-binding LysM domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30146.m003503" /inference="similar to AA sequence:ricco:30146.m003503" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4296t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4296t1" mRNA complement(join(19259536..19259986,19260519..19260626, 19261566..19261713,19261800..19261897,19261986..19262137, 19263060..19263165,19263269..19263358,19263444..19263589, 19264839..19265138,19266796..19267967)) /locus_tag="TCM_028898" /product="Kinase family protein / peptidoglycan-binding LysM domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30146.m003503" /inference="similar to AA sequence:ricco:30146.m003503" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc344t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4296t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc349t28_C1" CDS complement(join(19259822..19259986,19260519..19260626, 19261566..19261713,19261800..19261897,19261986..19262137, 19263060..19263165,19263269..19263358,19263444..19263589, 19264839..19265138,19266796..19267408)) /locus_tag="TCM_028898" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30146.m003503" /codon_start=1 /product="Kinase family protein / peptidoglycan-binding LysM domain-containing protein isoform 2" /protein_id="EOY26940.1" /db_xref="TAIR:AT1G51940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IB81" /translation="MNFIGSHLLILLTLIFLVRVQTLHALDSSPTTPMNCTDTSRLCT SFLAFKPQDNQTLAVIQSMFDVLPQDITVEEGDSHGYMFIKKNCSCLTTTKNYATNTT FTVRSNGAYVYDMILEAYDGLAMVPNVTRPARVGAVVSLRLFCGCSSGLWNYLMSYVM KDGDSVQSLASRFGVSMDSIEEVNGIVNPDNVTVGALYYIPLNSEIQVNHKAHVPYGW IIGGFGVGLALIILSIVVCISLRSSSCFAESHGSLAKDPDGKSSHKFHILRKPSFCCG SGRYICGKSGNWNQTNGEPSNHQITIPKALGTDVLDVEKPVIFTYEEILFSTDGFSES NLLGHGTYGSVYYGLLRDQEVAIKKMTATKTKEFMAEMKVLCKVHHANLVELIGYAAS DNELFLIYEYAQKGSLRSHLHDPQNKGHTPLSWIMRVQIALDAARGLEYIHEHTKTHY VHRDIKSSNILLDGSFRAKISDFGLSKLVGKTSDEEATATKVVGTFGYLAPEYLSDGL ASSKSDVYAFGVVLFETISGKEAIIRMEGTTVKNSERRSLASIMLAALRNTPDSMSMS NMKDYIDPNMLNLYPHDCVFKMAMLAKQCVDEDPIVRPDMKQVVINLSQILLSSVEWE ATLAGNSQVFSGLVQGR" CDS complement(join(19259822..19259986,19260519..19260626, 19261566..19261713,19261800..19261897,19261986..19262137, 19263060..19263165,19263269..19263358,19263444..19263589, 19264839..19265138,19265871..19265948,19266796..19267408)) /locus_tag="TCM_028898" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30146.m003503" /codon_start=1 /product="Kinase family protein / peptidoglycan-binding LysM domain-containing protein isoform 1" /protein_id="EOY26939.1" /db_xref="TAIR:AT1G51940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IB81" /translation="MNFIGSHLLILLTLIFLVRVQTLHALDSSPTTPMNCTDTSRLCT SFLAFKPQDNQTLAVIQSMFDVLPQDITVEEGDSHGYMFIKKNCSCLTTTKNYATNTT FTVRSNGAYVYDMILEAYDGLAMVPNVTRPARVGAVVSLRLFCGCSSGLWNYLMSYVM KDGDSVQSLASRFGVSMDSIEEVNGIVNPDNVTVGALYYIPLNSVPGEPYHVENDITP APVPAPSADTISEIQVNHKAHVPYGWIIGGFGVGLALIILSIVVCISLRSSSCFAESH GSLAKDPDGKSSHKFHILRKPSFCCGSGRYICGKSGNWNQTNGEPSNHQITIPKALGT DVLDVEKPVIFTYEEILFSTDGFSESNLLGHGTYGSVYYGLLRDQEVAIKKMTATKTK EFMAEMKVLCKVHHANLVELIGYAASDNELFLIYEYAQKGSLRSHLHDPQNKGHTPLS WIMRVQIALDAARGLEYIHEHTKTHYVHRDIKSSNILLDGSFRAKISDFGLSKLVGKT SDEEATATKVVGTFGYLAPEYLSDGLASSKSDVYAFGVVLFETISGKEAIIRMEGTTV KNSERRSLASIMLAALRNTPDSMSMSNMKDYIDPNMLNLYPHDCVFKMAMLAKQCVDE DPIVRPDMKQVVINLSQILLSSVEWEATLAGNSQVFSGLVQGR" mobile_element 19277770..19277809 /note="source:CACAO_M_S_E4863_F51_scaffold_1 5685 5724" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19281832..19281880) /note="source:CACAO_M_S_E4863_F51_scaffold_1 5684 5733" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19290193..19293463 /locus_tag="TCM_028899" /note="dbxref CacaoGD:Thecc1EG028899" mRNA join(19290193..19290585,19290735..19291347, 19291988..19292265,19292741..19292888,19293183..19293247, 19293357..19293463) /locus_tag="TCM_028899" /product="Phytochrome-associated protein 1, putative" /inference="alignment:exonerate-protein:2:frave:gene25723" /inference="similar to AA sequence:Phytozome:POPTR_0001s19120.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16096t2" CDS join(19290812..19291347,19291988..19292265, 19292741..19292888,19293183..19293247,19293357..19293391) /locus_tag="TCM_028899" /codon_start=1 /product="Phytochrome-associated protein 1, putative" /protein_id="EOY26941.1" /db_xref="Phytozome:POPTR_0001s19120.2" /db_xref="TAIR:AT3G16500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXF5" /translation="MESGCSKNVEACPQLLDLIPQQRRWHMKREDERRHGSSEEKKLE LRLGPPGEDNWSIKIDATKSNNKERDESLLSLGYFPSMNSNAKQTHTFPTPEDHPVGS VLSSPWANTQQHNHQQQTKPPSFLQFSSTAPQTLPVIAKESSQPCCTKAVDLHNAEKT AFSLPPANTSVPPNSSQKRTAPGPVVGWPPIRSFRKNLASSSSSKLASESPSVVPHKV ANEKAATEPTGKGLFVKINMDGVPIGRKVDLRAYDSYEKLSTAVDELFRGLLAAQRDS CAGGIVSKQEEEKVITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLK SSELSALSLGSSKQGKMPA" mobile_element 19295567..19296339 /note="source:scaffold_8_CACTA_0855 1771 2541" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19296598..19297162 /note="source:CACAO_Mutator_E1376_scaffold_6 2 622" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(19297161..19297258) /note="source:scaffold_9_CACTA_0936 328 425" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19297259..19297358 /note="source:CACAO_Mutator_E1376_scaffold_6 606 719" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(19297385..19297543) /note="source:CACAO_Mutator_E1376_scaffold_6 807 931" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19297512..19297921 /note="source:CACAO_Mutator_E1376_scaffold_6 1456 1863" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19297917..19299529 /note="source:CACAO_Mutator_E1376_scaffold_6 2023 3641" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19299515..19302145 /note="source:CACAO_Mutator_E1376_scaffold_6 6639 9320" /mobile_element_type="transposon:TIR/Mutator" gene 19302341..19303243 /locus_tag="TCM_028901" /note="dbxref CacaoGD:Thecc1EG028901" mRNA 19302341..19303243 /locus_tag="TCM_028901" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.17 coverage" CDS 19302414..19302680 /locus_tag="TCM_028901" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26942.1" /translation="MMPWIKAYSSNPRHGKEHWLRFPSLISNQTLFEKEKLCTQRQMP EISQVTSTQQLCGYNTLSRLCKKHIKLVVIQSDHQIEMVSFACL" gene complement(19306288..19312656) /locus_tag="TCM_028902" /note="dbxref CacaoGD:Thecc1EG028902" mRNA complement(join(19306288..19306673,19306870..19307222, 19307908..19307989,19309914..19310044,19310139..19310237, 19310409..19310564,19310725..19310799,19311116..19311298, 19311384..19311534,19312070..19312656)) /locus_tag="TCM_028902" /product="Hexokinase 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s19130.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037776t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s19130.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc415t4_C1" CDS complement(join(19306875..19307222,19307908..19307989, 19309914..19310044,19310139..19310237,19310409..19310564, 19310725..19310799,19311116..19311298,19311384..19311534, 19312070..19312341)) /locus_tag="TCM_028902" /note="paralog of Thecc1EG037776t2" /codon_start=1 /product="Hexokinase 2" /protein_id="EOY26943.1" /db_xref="Phytozome:POPTR_0001s19130.1" /db_xref="TAIR:AT2G19860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P93834" /translation="MGKVAVGVAVVCGVAVAAAAAVVVHRKMKKSGRWVKAMEIVKEF EEKCGTPIWKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGNEKGLFYALDL GGTNFRVLRVQLGGKGSGIVNQQFKEVSIPPSLMTGTSDALFDYIAVELAKFVAQEGT DFQLTPGRQRELGFTFSFPVMQTSISSGSLLRWTKGFSIDDTVGQDVVAELTKAMERQ GLDMRVSALVNDTVGTLAGGRYTNSDVAAAVILGTGSNAAYVERAHAIPKWHGLLPKS EEMVINMEWGNFRSSHLPLTEYDHALDAESLNPGEQIYEKIISGMYLGEIVRRVLLRM AEEAAFFGDIVPPKLKVPFVLRTPVMSAMHQDTSPDLKVVANKLKDTLEISNTSVKMR KVIVELCNIVATRGARLSAAGILGILKKTGRDTVKVGEKQRTVIAMDGGLYEHYAEFR KCLENTLSELLGEEVSESIVVEHSNDGSGIGAALLAASHSQYVEMEES" gene complement(19313276..19320054) /locus_tag="TCM_028903" /note="dbxref CacaoGD:Thecc1EG028903" mRNA complement(join(19313276..19314073,19314177..19314253, 19314730..19315503,19315635..19315799,19315878..19316207, 19316291..19316353,19316479..19316592,19317103..19317264, 19317358..19317420,19317694..19317801,19319390..19319467, 19319557..19320031)) /locus_tag="TCM_028903" /product="Nucleic acid binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g022090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG047046t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016969001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc387t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc387t1" mRNA complement(join(19313406..19314070,19314177..19314253, 19314730..19315503,19315635..19315799,19315878..19316207, 19316291..19316353,19316479..19316592,19317103..19317264, 19317358..19317420,19317694..19317801,19319390..19319467, 19319557..19319776)) /locus_tag="TCM_028903" /product="Nucleic acid binding protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g022090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG047046t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016969001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4362t3; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc387t1" mRNA complement(join(19313482..19314073,19314177..19314253, 19314730..19314980,19315059..19315503,19315635..19315799, 19315878..19316207,19316291..19316353,19316479..19316592, 19317103..19317264,19317358..19317420,19317694..19317801, 19319390..19319467,19319557..19320054)) /locus_tag="TCM_028903" /product="Nucleic acid binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g022090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG047046t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016969001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc387t1" CDS complement(join(19314046..19314073,19314177..19314253, 19314730..19314980,19315059..19315503,19315635..19315799, 19315878..19316207,19316291..19316353,19316479..19316592, 19317103..19317264,19317358..19317420,19317694..19317801, 19319390..19319467,19319557..19319691)) /locus_tag="TCM_028903" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG047046t1" /codon_start=1 /product="Nucleic acid binding protein, putative isoform 1" /protein_id="EOY26944.1" /db_xref="Phytozome:GSVIVT01016969001" /db_xref="TAIR:AT4G32850.6" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RQD8" /translation="MVSSEGLSGSTPPVAVPVEQYGVTKPISMAGPTEADIQRSRELE KFLVEAGLYDSEEETAKREEVLGRIQDIVTDWVKQLTRLRGYTGQMVEDAKAVILTFG SYRLGVHGPGSDVDTLCVGPSYVNREEDFFFVLHNILAEREEVTELQPVPDAHVPVMK FKFDGISIDLLYASISLLVVPQDLDISDVSVLYNVDEPTVRSLNGCRVADQILKLVPN AEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPIMLVSRFFR VFTQWRWPNPVMLCAIEEDELGFSVWDPRKNPRDRTHLMPIITPAYPCMNSSYNVSAS TLRVMTEQLKYGNNICEEIQLNRVKWSALFEPYLFFESYKNYLQVDVVAADANDLRAW KGWVESRLRQLTLMIERVTYGKLQCHPYPHEYVDASKPCACCAFFMGLQRKQGEIVQE GQQFDIRGSVDEFRHSVSMYMYWKPGMEIHVSHIRRKQLPAYVLPDGYKHPRNPRVTP HHQSDKLSHNNHIACTESGGKCLKRKKDPEGENSEHSKPEKRLNLDDEMNGVAEGNAS SNFSTISSCSNEDIGNESSEGSNGGDNGSIEGSTIPASSRSDSCDADSKSSLEDEHAD HNRVFEDGLQKELEPNAAVGVVLKSMNEADSETVQNTVISRLNLTSTA" CDS complement(join(19314046..19314070,19314177..19314253, 19314730..19315503,19315635..19315799,19315878..19316207, 19316291..19316353,19316479..19316592,19317103..19317264, 19317358..19317420,19317694..19317801,19319390..19319467, 19319557..19319691)) /locus_tag="TCM_028903" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG047046t1" /codon_start=1 /product="Nucleic acid binding protein, putative isoform 3" /protein_id="EOY26946.1" /db_xref="Phytozome:GSVIVT01016969001" /db_xref="TAIR:AT4G32850.9" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RQD8" /translation="MVSSEGLSGSTPPVAVPVEQYGVTKPISMAGPTEADIQRSRELE KFLVEAGLYDSEEETAKREEVLGRIQDIVTDWVKQLTRLRGYTGQMVEDAKAVILTFG SYRLGVHGPGSDVDTLCVGPSYVNREEDFFFVLHNILAEREEVTELQPVPDAHVPVMK FKFDGISIDLLYASISLLVVPQDLDISDVSVLYNVDEPTVRSLNGCRVADQILKLVPN AEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPIMLVSRFFR VFTQWRWPNPVMLCAIEEDELGFSVWDPRKNPRDRTHLMPIITPAYPCMNSSYNVSAS TLRVMTEQLKYGNNICEEIQLNRVKWSALFEPYLFFESYKNYLQVDVVAADANDLRAW KGWVESRLRQLTLMIERVTYGKLQCHPYPHEYVDASKPCACCAFFMGLQRKQGEIVQE GQQFDIRGSVDEFRHSVSMYMYWKPGMEIHVSHIRRKQLPAYVLPDGYKHPRNPRVTP HHQSDKLSHNNHIACTESGGKCLKRKKDPEGENSEHSKPEKRLNLDGSESVSPEIISC ELSRMSSGCSTSDLDEMNGVAEGNASSNFSTISSCSNEDIGNESSEGSNGGDNGSIEG STIPASSRSDSCDADSKSSLEDEHADHNRVFEDGLQKELEPNAAVGVVLKSMNEADSE TVQNTVIRLNLTSTA" CDS complement(join(19314046..19314073,19314177..19314253, 19314730..19315503,19315635..19315799,19315878..19316207, 19316291..19316353,19316479..19316592,19317103..19317264, 19317358..19317420,19317694..19317801,19319390..19319467, 19319557..19319691)) /locus_tag="TCM_028903" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG047046t1" /codon_start=1 /product="Nucleic acid binding protein, putative isoform 2" /protein_id="EOY26945.1" /db_xref="Phytozome:GSVIVT01016969001" /db_xref="TAIR:AT4G32850.9" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RQD8" /translation="MVSSEGLSGSTPPVAVPVEQYGVTKPISMAGPTEADIQRSRELE KFLVEAGLYDSEEETAKREEVLGRIQDIVTDWVKQLTRLRGYTGQMVEDAKAVILTFG SYRLGVHGPGSDVDTLCVGPSYVNREEDFFFVLHNILAEREEVTELQPVPDAHVPVMK FKFDGISIDLLYASISLLVVPQDLDISDVSVLYNVDEPTVRSLNGCRVADQILKLVPN AEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPIMLVSRFFR VFTQWRWPNPVMLCAIEEDELGFSVWDPRKNPRDRTHLMPIITPAYPCMNSSYNVSAS TLRVMTEQLKYGNNICEEIQLNRVKWSALFEPYLFFESYKNYLQVDVVAADANDLRAW KGWVESRLRQLTLMIERVTYGKLQCHPYPHEYVDASKPCACCAFFMGLQRKQGEIVQE GQQFDIRGSVDEFRHSVSMYMYWKPGMEIHVSHIRRKQLPAYVLPDGYKHPRNPRVTP HHQSDKLSHNNHIACTESGGKCLKRKKDPEGENSEHSKPEKRLNLDGSESVSPEIISC ELSRMSSGCSTSDLDEMNGVAEGNASSNFSTISSCSNEDIGNESSEGSNGGDNGSIEG STIPASSRSDSCDADSKSSLEDEHADHNRVFEDGLQKELEPNAAVGVVLKSMNEADSE TVQNTVISRLNLTSTA" gene complement(19322514..19330884) /locus_tag="TCM_028904" /note="dbxref CacaoGD:Thecc1EG028904" mRNA complement(join(19322514..19323421,19323726..19323775, 19323979..19324095,19325989..19326113,19326225..19326285, 19326531..19326920,19327126..19327291,19327515..19327711, 19328304..19328515,19328683..19328831,19328902..19329242, 19330759..19330884)) /locus_tag="TCM_028904" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(19323111..19323421,19323726..19323775, 19323979..19324095,19325989..19326113,19326225..19326285, 19326531..19326920,19327126..19327291,19327515..19327711, 19328304..19328515,19328683..19328831,19328902..19329157)) /locus_tag="TCM_028904" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26947.1" /translation="MLRDSKEVRNVNSVREFTNETMINQRMNFKEALTRNINEREVRT QGKVDMNKANVSRGKETKSIDDCAKEVKTILIEKDELNWLEWVNIGVRPIGGQFVLVS FRNKDEIETLLNQYWDIFEPWVISLSPYSAGKEIPSRYFAFALIEVNGKGFQVKALIK EVLSCEAISRYDELSSEPFGESDQGLKKSKVGMDRMTECAREGVQRLLEKWLRSKNQD LELEGTKESLQSIDGRKTKKKACGKIDKAIEGKSKCKVKSKLKKMEGFFRSKKESDED AEVGEVDNDNETGLIFEMSRLMGFEFIKRKEKVLNYFVDMEKYRTKGAPNIGDKISGS FVASMGKTKGLISIWHDDFFQVCEQIHNRHFLVVIGKVTEVEKCYGFINIYYLNEESL KQNLCEELEQLMRSKNILWCLGEDFNIIRNKQKMVGKEGIRRLEEKFNEFINNLALVD LELTRDRNKTKNGEEAKLWDKLRDLKLDDTKWEIVQKKVELWRLYRTDKVEWRQRSRC KWVQEGDCNAKCLFDWEKSQWYALGDTLKEVQLNKKMKDVLIWKCEVSGRKRNLLSLF HQMQQNLEGSYAKMKQKQVRKRIKWAAPKQGFIKFNVDSSTKGCLGLAGIGGILTNEF GEVKISFSKSIGITDSSQVEIMAVKEAIMSFSTSKWKDSHHPIVESDAINIVS" mobile_element 19331233..19331312 /note="source:CACAO_M_E57143_F88_scaffold_8 418 492" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19331809..19332713 /note="source:CACAO_Again_on_S_E212_scaffold_6 1 905" /mobile_element_type="transposon:TIR/hAT" gene 19336247..19339506 /locus_tag="TCM_028905" /note="dbxref CacaoGD:Thecc1EG028905" mRNA join(19336247..19336375,19336551..19337537, 19338301..19338507,19338608..19339506) /locus_tag="TCM_028905" /product="Iq-domain 14 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30146.m003498" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037770t1" /inference="similar to AA sequence:ricco:30146.m003498" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc320t3" mRNA join(19336339..19336368,19336551..19337537, 19338301..19338507,19338608..19339505) /locus_tag="TCM_028905" /product="Iq-domain 14 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30146.m003498" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037770t1" /inference="similar to AA sequence:ricco:30146.m003498" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc385t2; alternateUTRof:Thecc1EG028905t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc320t3" CDS join(19337109..19337537,19338301..19338507, 19338608..19339192) /locus_tag="TCM_028905" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30146.m003498; paralog of Thecc1EG037770t1" /codon_start=1 /product="Iq-domain 14 isoform 1" /protein_id="EOY26948.1" /db_xref="TAIR:AT3G16490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LK76" /translation="MGRATRWLKGLLGMKKEKDKDRDQIGHSNSVLCDKKEKKRWSFA KSGKDANAISQIPLSITRSIPANDAAWLRSYIAESEKEQKKHAIAVAAATAAAADAAV AAAQAAVAVVRLTSNGRGTLFGGGRERWAAVKIQTVFRGYLARKALRALKGLVRLQAL VRGYLVRKRATATLRSMQALIRAQAAVRSQRLRRSFNKENRYYPENRPRKSIERFDDP RSAIHSKRLSASIEISAYDESPKIVEIDTFKTRSRSRRYNTALSDCGDDLPYQIISSP LPCPVPARASVPNCQNLHDFEWCFTGDECRFSTAHSTPRFANTAMSNAPTTPAKSVCG DGYFRPYSNFPNYMANTQSFKAKLRSHSAPKQRPEPGVKKRLSLNEIMAARNSMSGVR MNKSCYQVEEALDF" CDS join(19337109..19337537,19338301..19338507, 19338608..19339192) /locus_tag="TCM_028905" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30146.m003498; paralog of Thecc1EG037770t1" /codon_start=1 /product="Iq-domain 14 isoform 1" /protein_id="EOY26949.1" /db_xref="TAIR:AT3G16490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LK76" /translation="MGRATRWLKGLLGMKKEKDKDRDQIGHSNSVLCDKKEKKRWSFA KSGKDANAISQIPLSITRSIPANDAAWLRSYIAESEKEQKKHAIAVAAATAAAADAAV AAAQAAVAVVRLTSNGRGTLFGGGRERWAAVKIQTVFRGYLARKALRALKGLVRLQAL VRGYLVRKRATATLRSMQALIRAQAAVRSQRLRRSFNKENRYYPENRPRKSIERFDDP RSAIHSKRLSASIEISAYDESPKIVEIDTFKTRSRSRRYNTALSDCGDDLPYQIISSP LPCPVPARASVPNCQNLHDFEWCFTGDECRFSTAHSTPRFANTAMSNAPTTPAKSVCG DGYFRPYSNFPNYMANTQSFKAKLRSHSAPKQRPEPGVKKRLSLNEIMAARNSMSGVR MNKSCYQVEEALDF" gene 19344057..19348141 /locus_tag="TCM_028906" /note="dbxref CacaoGD:Thecc1EG028906" mRNA join(19344057..19344277,19344411..19346554, 19347064..19348141) /locus_tag="TCM_028906" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30146.m003497" /inference="similar to AA sequence:Phytozome:GSVIVT01016967001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4353t2" mRNA join(19344057..19344277,19344411..19346554, 19347067..19348141) /locus_tag="TCM_028906" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30146.m003497" /inference="similar to AA sequence:Phytozome:GSVIVT01016967001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:PASA:2:TSA:puevd3b027953t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4353t2" CDS join(19344211..19344277,19344411..19346554, 19347064..19347156) /locus_tag="TCM_028906" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY26950.1" /db_xref="Phytozome:GSVIVT01016967001" /translation="MKGSDKKVSFSTPPIKSSASPKGSDENDRSNQELGLNVQNLKKE TVKNFMSPTVSAASKATFPRRKILAERNESPGSNFSSTYLSKTPNLDSKASPKTIPKA SQKNSPNLDPKANSKETSSQKTPLSYSSRDETPSPRPYDPLTNYLSPRPQFLRYNPTR RNEIFLRLRMEDKEDDELSVSSTSSFGSKKDSGDKADSVSSDGSLSEQEYEEFDIESD EESEEEVGWSLRGALKYMLLLVVLLLTTSYISSMNSPTPSQAFEGLPLCNKKIHNHSY GIVESVEVVHKFLDGKQDQLGLLGLNQAIVDEGIQKEMVENVNLGEIVSLELEDGNYV EYVEMVEEVKKDGKSEHACEEEFVKGADVSDQFVQDKLIKDVEKVEYLKKNGESENKI EDELAETKEVSDQVVENIELQETEETGEQIEDVEKVESVKENGESEDVIEEELVETGE VSDKMVGDIKLLGQETAGEIESIQGFLSEGTDHQEPASHTTDSSEKERVAAKEVSEEI HNEARDDDMVQGNILQSEVTMLERSGKSSAFWSLNFEEVNPLKGCQQIGTEVLLKVMF GVLTCAAIVASLVLGSNIRRKGIASKHSSLVDKHSSKPVVKEKPSSVLSAEREEHKRH FDSFMSTMPSINSTDKDIKESCQSRAPSVELLGEFDVGSISSSLKSRAIKSTMKDEVS SYSDFLEKGFGSKAYSAPVQDQQDFSDFSTVNSILSERLAVKKKILRKEFANNDMQAG PDGEGRNVVTTPLRRSARIRNRAVASP" CDS join(19344211..19344277,19344411..19346554, 19347067..19347156) /locus_tag="TCM_028906" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY26951.1" /db_xref="Phytozome:GSVIVT01016967001" /translation="MKGSDKKVSFSTPPIKSSASPKGSDENDRSNQELGLNVQNLKKE TVKNFMSPTVSAASKATFPRRKILAERNESPGSNFSSTYLSKTPNLDSKASPKTIPKA SQKNSPNLDPKANSKETSSQKTPLSYSSRDETPSPRPYDPLTNYLSPRPQFLRYNPTR RNEIFLRLRMEDKEDDELSVSSTSSFGSKKDSGDKADSVSSDGSLSEQEYEEFDIESD EESEEEVGWSLRGALKYMLLLVVLLLTTSYISSMNSPTPSQAFEGLPLCNKKIHNHSY GIVESVEVVHKFLDGKQDQLGLLGLNQAIVDEGIQKEMVENVNLGEIVSLELEDGNYV EYVEMVEEVKKDGKSEHACEEEFVKGADVSDQFVQDKLIKDVEKVEYLKKNGESENKI EDELAETKEVSDQVVENIELQETEETGEQIEDVEKVESVKENGESEDVIEEELVETGE VSDKMVGDIKLLGQETAGEIESIQGFLSEGTDHQEPASHTTDSSEKERVAAKEVSEEI HNEARDDDMVQGNILQSEVTMLERSGKSSAFWSLNFEEVNPLKGCQQIGTEVLLKVMF GVLTCAAIVASLVLGSNIRRKGIASKHSSLVDKHSSKPVVKEKPSSVLSAEREEHKRH FDSFMSTMPSINSTDKDIKESCQSRAPSVELLGEFDVGSISSSLKSRAIKSTMKDEVS SYSDFLEKGFGSKAYSAPVQDQQDFSDFSTVNSILSERLAVKKKILRKEFANNDMAGP DGEGRNVVTTPLRRSARIRNRAVASP" gene complement(19347790..19348477) /locus_tag="TCM_028907" /note="dbxref CacaoGD:Thecc1EG028907" mRNA complement(19347790..19348477) /locus_tag="TCM_028907" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.36 coverage" CDS complement(19348172..19348372) /locus_tag="TCM_028907" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26952.1" /translation="MLVSMRTTCGGGVTVATPQILIFLLFFSSTLDMKFAMLESGRSG IYICHQAEFPNLYELESSCMCS" gene complement(19348881..19350102) /locus_tag="TCM_028908" /note="dbxref CacaoGD:Thecc1EG028908" mRNA complement(join(19348881..19349369,19349689..19349988)) /locus_tag="TCM_028908" /product="Oxidative stress 3, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01015284001.2" /inference="similar to AA sequence:Phytozome:GSVIVT01015284001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1162t1_C2" mRNA complement(join(19348922..19349369,19349689..19350102)) /locus_tag="TCM_028908" /product="Oxidative stress 3, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01015284001.2" /inference="similar to AA sequence:Phytozome:GSVIVT01015284001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1162t1_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1162t1_C2" CDS complement(join(19349075..19349369,19349689..19350005)) /locus_tag="TCM_028908" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Oxidative stress 3, putative isoform 2" /protein_id="EOY26954.1" /db_xref="Phytozome:GSVIVT01015284001" /translation="MISKMAQADLKGMFQAPGFVEKKDKHDEKHGDHCWMNVEDDDDD DDDVITTTSESSLGEYSRTSQGSTSCSSDLVDDASSSTSNSSTICNGPLYEMSELMAQ LPIKRGLSKYFQGKSQSFTSLSSVKSLEDLAKKETPYRKKMKACKSYGGGLDTHKFYP LPRATISKKVSRNSLSLSFPGRRSSFLSGRPPPIPVQKNFSSV" CDS complement(join(19349075..19349369,19349689..19349969)) /locus_tag="TCM_028908" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Oxidative stress 3, putative isoform 1" /protein_id="EOY26953.1" /db_xref="Phytozome:GSVIVT01015284001" /translation="MFQAPGFVEKKDKHDEKHGDHCWMNVEDDDDDDDDVITTTSESS LGEYSRTSQGSTSCSSDLVDDASSSTSNSSTICNGPLYEMSELMAQLPIKRGLSKYFQ GKSQSFTSLSSVKSLEDLAKKETPYRKKMKACKSYGGGLDTHKFYPLPRATISKKVSR NSLSLSFPGRRSSFLSGRPPPIPVQKNFSSV" mobile_element complement(19351259..19351424) /note="source:CACAO_on_S_E390_scaffold_9 2194 2375" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19352563..19353213 /note="source:INTACT687_F13_scaffold_3-int 1297 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19353597..19354993 /locus_tag="TCM_028909" /note="dbxref CacaoGD:Thecc1EG028909" mRNA 19353597..19354993 /locus_tag="TCM_028909" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.25 coverage" CDS 19354181..19354474 /locus_tag="TCM_028909" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26955.1" /translation="MIVERFNGGLKHNCPSSPFDINFAGNSFEQSALVFALRRYTLSL PTPLPYMKSSRQKAKKKETEKNINMTDAQRLPAKVACLFIEGQLGFQLQNPDL" mobile_element complement(19355148..19355222) /note="source:scaffold_3_CACTA_0377 2118 2192" /mobile_element_type="transposon:TIR/CACTA" gene complement(19355605..19357670) /locus_tag="TCM_028910" /note="dbxref CacaoGD:Thecc1EG028910" mRNA complement(join(19355605..19355897,19356774..19356911, 19357437..19357670)) /locus_tag="TCM_028910" /product="Profilin 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04610.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037756t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s19170.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16075t1" CDS complement(join(19355763..19355897,19356774..19356911, 19357437..19357562)) /locus_tag="TCM_028910" /note="paralog of Thecc1EG037756t1" /codon_start=1 /product="Profilin 5" /protein_id="EOY26956.1" /db_xref="Phytozome:POPTR_0001s19170.1" /db_xref="TAIR:AT2G19770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38905" /translation="MSWQTYVDDHLMCEIDSGHHLSAAAIIGHDGSVWAQSTSFPQFK PEEIIAIMKDFDEPGSLAPSGLHLGGTKYMVIQGEPGAVIRGKKGAGGITVKKTGQAL IFGLYDEPVTPGQCNMVVERLGDYLVDQGL" gene complement(19357929..19369091) /locus_tag="TCM_028911" /note="dbxref CacaoGD:Thecc1EG028911" mRNA complement(join(19357929..19358758,19358870..19359191, 19359278..19359709,19362832..19363067,19363532..19363853, 19363951..19364346,19368635..19369091)) /locus_tag="TCM_028911" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017180001" /inference="similar to AA sequence:Phytozome:GSVIVT01017180001" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(19358513..19358758,19358870..19359191, 19359278..19359709,19362832..19363067,19363532..19363853, 19363951..19364321)) /locus_tag="TCM_028911" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein, putative" /protein_id="EOY26957.1" /db_xref="Phytozome:GSVIVT01017180001" /db_xref="TAIR:AT1G52800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GL06" /translation="MAPQSAVRLPVIDLFDENSVPGTASWVSKCKDVRLALEEYGCFL TPYDKVSLQLQDQVFNSVQELFALPTEKKVQNTSDKPYFGYFKHPLIPLSESMGIDGP TVLEGTQSFTDLMWPNGNKRFCESVHTYAKLVSQLDRRVKYMVFESYGVGKYFDSHID STSYLLRLIKYRLPKEEETNNCGFPHTDKSFLTILHDNQVAGLEIKTKDGRWIGVEPS GSMFIVMAGDAFLAWSNGRVHSALHRVVTNGKKERYSLGFFSFSGETIRTPEELIDEA HPLLFKPFENIDLLRLYSLDDVRKYSQKFNDEAMSQYSKLSNYSQQKSSKNYMIMATQ SAIKLPVIDLFDDESEPGTDSWISKCEEVQRAFEEYGCFLATYDKVSLQLQDEVFDSV RELFHLPTEKKVLNTSDKPYFGYFKHPSIPLSESMGIDNPTILEGTQSFTNLMWPNGN QIFCESIYAYAKLVSELDRMVKTMVFESYGVRKYYDSHIQSTNYLLRLIKYRVPREDE NDFDGCPHTDKSFMTILHDNHIAGLQIKAKDGNWIGVEPSGSMFVVMAGDAFLAWSNG RIQSPTHRVIMKAKKERYCLALFSFSGETIRTPEELVDEAHPLLFKPFDNMDLLRLFS LDDVHQHARSFSQPKCGA" mobile_element 19365239..19365322 /note="source:CACAO_M_S_E16543_F3_scaffold_2 4759 4834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19365267..19365330) /note="source:scaffold_5_CACTA_0580 7205 7273" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19365696..19365742) /note="source:CACAO_M_E44848_F172_scaffold_6 1932 1978" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19369186..19371085 /locus_tag="TCM_028912" /note="dbxref CacaoGD:Thecc1EG028912" mRNA join(19369186..19369567,19370325..19371085) /locus_tag="TCM_028912" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000731t1" /inference="similar to AA sequence:ricco:29970.m001012" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage" CDS join(19369445..19369567,19370325..19370636) /locus_tag="TCM_028912" /note="dbxref ricco:29970.m001012; paralog of Thecc1EG000731t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26958.1" /translation="MGGTNATRCLYNHRGDNLYDENGRCGVGFLAEIIRKYLELFVHL QSAGAQVDVNAQELAARRTVIRCVQEYGLEADYPLDPLQERFAQLEKSKSDNRKRAGD SGKHQQPKKSRPNVGFRGFRGPPCRQAAPVYNNRSAYAGMPE" gene complement(19371134..19374438) /locus_tag="TCM_028913" /note="dbxref CacaoGD:Thecc1EG028913" mRNA complement(join(19371134..19371548,19371700..19371837, 19372698..19372998,19373898..19374438)) /locus_tag="TCM_028913" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30146.m003494.2" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4341t2" CDS complement(join(19371375..19371548,19371700..19371765)) /locus_tag="TCM_028913" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26959.1" /translation="MCAYILDFGRTASEPVGTWIISDQDKEGKEKKGDGEEDNREEEP GELSDESYSDDGDYNEFSMKFSMLIHMISAFVIPF" mobile_element complement(19374672..19374842) /note="source:INTACT639F_F363_scaffold_5-int 8395 8548" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19374899..19374966 /note="source:CACAO_on_E362_scaffold_1 4238 4305" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(19375098..19375142) /note="source:scaffold_2_CACTA_0252 8798 8847" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19375708..19376012 /note="source:scaffold_4_CACTA_0511 3095 3364" /mobile_element_type="transposon:TIR/CACTA" gene complement(19377291..19379061) /locus_tag="TCM_028914" /note="dbxref CacaoGD:Thecc1EG028914" mRNA complement(join(19377291..19377664,19377766..19377975, 19378507..19379061)) /locus_tag="TCM_028914" /product="Stem 28 kDa glycoprotein, putative" /inference="alignment:exonerate- protein:2:ricco:30146.m003492" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011289t1" /inference="similar to AA sequence:ricco:30146.m003492" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS complement(join(19377487..19377664,19377766..19377975, 19378507..19378898)) /locus_tag="TCM_028914" /note="dbxref ricco:30146.m003492; paralog of Thecc1EG011289t1" /codon_start=1 /product="Stem 28 kDa glycoprotein, putative" /protein_id="EOY26960.1" /db_xref="TAIR:AT5G51260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RQD0" /translation="MALFLFLFLATTLGISQGSDQDTVTHKIHLLRPQSGAAGNHVPG LSCLSWRLGVETNNVVGWITVPEECEEYVGHYMLGHQYRKDSRVVANQALLYAQSLSL ARDCKDVWVFDIDETALSNLPYYAQHGFGVEQYNPTLFNKWVMEGKAPALPETLNLYK KLLSLGTKVVFLTGRPEYQRSVTANNLRKAGYQTWEKLILKGSSYSGKSAVVYKSSER KKLAMSGYKIIGNMGDQWSDLLGTDVGNRTFKMPDPMYYIS" gene complement(19383634..19390019) /locus_tag="TCM_028915" /note="dbxref CacaoGD:Thecc1EG028915" mRNA complement(join(19383634..19383760,19383917..19383968, 19384064..19384436,19384523..19384635,19385718..19385767, 19385968..19386038,19386187..19386259,19386523..19386620, 19386843..19386909,19387115..19387195,19387352..19387519, 19387677..19387844,19388638..19388934,19389063..19389239, 19389771..19390019)) /locus_tag="TCM_028915" /product="Mitochondrial-processing peptidase subunit alpha isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G51980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037745t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016955001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc500t10; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc500t10" mRNA complement(join(19384072..19384437,19384523..19384635, 19385717..19385767,19385968..19386042,19386187..19386259, 19386523..19386620,19386843..19386912,19387115..19387195, 19387352..19387519,19387677..19387844,19388638..19388934, 19389063..19389239,19389771..19389909)) /locus_tag="TCM_028915" /product="Mitochondrial-processing peptidase subunit alpha isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT1G51980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037745t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016955001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4471t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc500t10" CDS complement(join(19384378..19384436,19384523..19384635, 19385718..19385767,19385968..19386038,19386187..19386259, 19386523..19386620,19386843..19386909,19387115..19387195, 19387352..19387519,19387677..19387844,19388638..19388934, 19389063..19389239,19389771..19389809)) /locus_tag="TCM_028915" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037745t1" /codon_start=1 /product="Mitochondrial-processing peptidase subunit alpha isoform 1" /protein_id="EOY26961.1" /db_xref="Phytozome:GSVIVT01016955001" /db_xref="TAIR:AT1G51980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P29677" /translation="MYRTALSRFRAVKGRTGNLAAAHYATSSAVASLETPLEGVSLPP ALPDYVASSETKVKTLSNGVKIASEKLLTPAASIGLFINSGSIYETPISSGASHLLER MAFKSTTNRTHLRIVREVEAIGGNTSTSASRECMAYTFDALKSYVPEMVELLIDCVRN PAFLDWEVNEELQKLKAELEEVSKNPERLILEAVHSTGYCGALANPLLAPESALDRLD SSILEEFVTENYTGTRMVLAASGIEHEELLQIAEPLLSDLPAGPYLEEPESVYVGGDF RRQADAPSSHFALAFEVPGGWNSEKESVILTVMQMLMGGGGSFSAGGPGKGMHSRLYL RVLNEYQQIQSFSAFNSIFNNTGLFGIYGSTSSDFVSKAVDIAAEELLLLAEEGAVSR LMIKRAQEATKSAVLMNLESRMIVAEDIGRQILTYGERKSVQSFLKMVDEVTLRDIAD MAKKILSSPLTMASYGDVINVPSYESVSSKFHAKRV" mRNA complement(join(19384608..19384635,19385718..19385767, 19385968..19386259,19386523..19386620,19386843..19386909, 19387115..19387195,19387352..19387519,19387677..19387844, 19388638..19388934,19389063..19389239,19389771..19389989)) /locus_tag="TCM_028915" /product="Mitochondrial-processing peptidase subunit alpha, putative isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT1G51980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037745t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016955001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc515t6_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc500t10" mRNA complement(join(19385742..19385767,19385968..19386038, 19386187..19386620,19386843..19386909,19387115..19387195, 19387352..19387519,19387677..19387844,19388638..19388934, 19389063..19389239,19389771..19390019)) /locus_tag="TCM_028915" /product="Mitochondrial-processing peptidase subunit alpha, putative isoform 4" /inference="alignment:exonerate- protein:2:TAIR:AT1G51980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037745t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016955001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc500t9; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc500t10" CDS complement(join(19385969..19386042,19386187..19386259, 19386523..19386620,19386843..19386912,19387115..19387195, 19387352..19387519,19387677..19387844,19388638..19388934, 19389063..19389239,19389771..19389809)) /locus_tag="TCM_028915" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037745t1" /codon_start=1 /product="Mitochondrial-processing peptidase subunit alpha isoform 2" /protein_id="EOY26962.1" /db_xref="Phytozome:GSVIVT01016955001" /db_xref="TAIR:AT1G51980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P29677" /translation="MYRTALSRFRAVKGRTGNLAAAHYATSSAVASLETPLEGVSLPP ALPDYVASSETKVKTLSNGVKIASEKLLTPAASIGLFINSGSIYETPISSGASHLLER MAFKSTTNRTHLRIVREVEAIGGNTSTSASRECMAYTFDALKSYVPEMVELLIDCVRN PAFLDWEVNEELQKLKAELEEVSKNPERLILEAVHSTGYCGALANPLLAPESALDRLD SSILEEFVTENYTGTRMVLAASGIEHEELLQIAEPLLSDLPAGPYLEEPESVYVGGDF RRQADAPSSHFALAFEVPGGWNSEKESVILTVMQQMLMGGGGSFSAGGPGKGMHSRLY LRVLNEYQQIQSFSAFNSIFNNTGLFGIYGSTSSDFVSKAVDIAAEELLLLAEEGAGS ISANDKTCTRGHKICSTDESRI" CDS complement(join(19386056..19386259,19386523..19386620, 19386843..19386909,19387115..19387195,19387352..19387519, 19387677..19387844,19388638..19388934,19389063..19389239, 19389771..19389809)) /locus_tag="TCM_028915" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG037745t1" /codon_start=1 /product="Mitochondrial-processing peptidase subunit alpha, putative isoform 3" /protein_id="EOY26963.1" /db_xref="Phytozome:GSVIVT01016955001" /db_xref="TAIR:AT1G51980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P29677" /translation="MYRTALSRFRAVKGRTGNLAAAHYATSSAVASLETPLEGVSLPP ALPDYVASSETKVKTLSNGVKIASEKLLTPAASIGLFINSGSIYETPISSGASHLLER MAFKSTTNRTHLRIVREVEAIGGNTSTSASRECMAYTFDALKSYVPEMVELLIDCVRN PAFLDWEVNEELQKLKAELEEVSKNPERLILEAVHSTGYCGALANPLLAPESALDRLD SSILEEFVTENYTGTRMVLAASGIEHEELLQIAEPLLSDLPAGPYLEEPESVYVGGDF RRQADAPSSHFALAFEVPGGWNSEKESVILTVMQMLMGGGGSFSAGGPGKGMHSRLYL RVLNEYQQIQSFSAFNSIFNNTGLFGIYGSTSSDFVSKAVDIAAEELLLLAEEGAGLL ALHFSYFLPLCFLATPFRMASFFIIATPALFVFFSFFTNF" CDS complement(join(19386409..19386620,19386843..19386909, 19387115..19387195,19387352..19387519,19387677..19387844, 19388638..19388934,19389063..19389239,19389771..19389809)) /locus_tag="TCM_028915" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG037745t1" /codon_start=1 /product="Mitochondrial-processing peptidase subunit alpha, putative isoform 4" /protein_id="EOY26964.1" /db_xref="Phytozome:GSVIVT01016955001" /db_xref="TAIR:AT1G51980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P29677" /translation="MYRTALSRFRAVKGRTGNLAAAHYATSSAVASLETPLEGVSLPP ALPDYVASSETKVKTLSNGVKIASEKLLTPAASIGLFINSGSIYETPISSGASHLLER MAFKSTTNRTHLRIVREVEAIGGNTSTSASRECMAYTFDALKSYVPEMVELLIDCVRN PAFLDWEVNEELQKLKAELEEVSKNPERLILEAVHSTGYCGALANPLLAPESALDRLD SSILEEFVTENYTGTRMVLAASGIEHEELLQIAEPLLSDLPAGPYLEEPESVYVGGDF RRQADAPSSHFALAFEVPGGWNSEKESVILTVMQMLMGGGGSFSAGGPGKGMHSRLYL RVLNEYQQIQSFSAFNSIFNNTGLFGIYGSTVRLSLHTLLPCLFAQKFCSSVCTCTCR CAYGLYYSTL" mobile_element 19387665..19387942 /note="source:CACAO_on_E279_scaffold_9 4163 4440" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(19391138..19391303) /note="source:CACAO_hAT_E2862_scaffold_6 4633 4789" /mobile_element_type="transposon:TIR/hAT" mobile_element 19391162..19394058 /note="source:CACAO_Again_on_E39_scaffold_2 13 2927" /mobile_element_type="transposon:TIR/hAT" mobile_element 19394059..19394155 /note="source:scaffold_9_CACTA_0936 328 423" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19394149..19394217) /note="source:CACAO_hAT_E2862_scaffold_6 1854 1922" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(19394226..19394894) /note="source:CACAO_hAT_E2862_scaffold_6 1 720" /mobile_element_type="transposon:TIR/hAT" gene 19398067..19402761 /locus_tag="TCM_028918" /note="dbxref CacaoGD:Thecc1EG028918" mRNA join(19398067..19398785,19399064..19399110, 19399231..19399270,19399552..19399614,19399711..19399848, 19399927..19400085,19400213..19400266,19400420..19400488, 19400614..19400743,19401269..19401534,19401879..19401951, 19402046..19402200,19402325..19402761) /locus_tag="TCM_028918" /product="6-phosphofructokinase 3" /inference="alignment:exonerate- protein:2:ricco:30146.m003489" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037743t1" /inference="similar to AA sequence:ricco:30146.m003489" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc820t6" CDS join(19398528..19398785,19399064..19399110, 19399231..19399270,19399552..19399614,19399711..19399848, 19399927..19400085,19400213..19400266,19400420..19400488, 19400614..19400743,19401269..19401534,19401879..19401951, 19402046..19402200,19402325..19402477) /locus_tag="TCM_028918" /note="dbxref ricco:30146.m003489; paralog of Thecc1EG037743t1" /codon_start=1 /product="6-phosphofructokinase 3" /protein_id="EOY26965.1" /db_xref="TAIR:AT4G26270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94AA4" /translation="MDSISCSASRITPRFRCFDPTNTYPATANHRRYYSTLPLSGSRS PRAANTNMGDSTTITEPKIVTGDCGYVLEDVPHLSDYIHDLPTHTNPLQDNPAYSVVK QYFVNVDDTVAQKIVVQKDSPRGTHFRRAGPRQKVYFESDEVHACIVTCGGLCPGLNT VIREIVCGLYHMYGVTRVLGIEGGYKGFYARNTVPLTPRVVNDIHKRGGTILGTSRGG NDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIFEEIKRRGLKVAVAGIPKTIDNDIP VIDKSFGFDTAVEEAQRAIAAAHVESESVENGIGLVKLMGRHSGFIAMYATLASRDVD CCLIPESPFYLEGAGGLLEYIEKRLKENGHMVIVVAEGAGQEFLSENIRTIDKQDASG NKQLQDIGFWISQKIKDHFSKQKKMAMNLKYIGQLLKTLHDPTYMIRAIPSNASDNVY CTLLAHSAIHGAMAGYTGFTVGPVNGRHAYIPFHRITQKQNKVVITDRMWARCLSSTN QPSFFSPQQLLEKKTQVEVEENHIDH" gene complement(19401262..19421801) /locus_tag="TCM_028919" /note="dbxref CacaoGD:Thecc1EG028919" mRNA complement(join(19401262..19401535,19401880..19401927, 19402046..19402208,19402333..19403058,19403392..19403464, 19404140..19404178,19405095..19405172,19405731..19405886, 19406093..19406158,19407091..19407171,19408291..19408353, 19408691..19408798,19409575..19409658,19409841..19409912, 19410069..19410127,19410308..19410363,19410460..19411491)) /locus_tag="TCM_028919" /product="ATP-dependent peptidases,nucleotide binding,serine-type endopeptidases,DNA helicases,ATP binding,damaged DNA binding,nucleoside-triphosphatases isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s19200.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s19200.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc785t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4469t2" mRNA complement(join(19401262..19401535,19401880..19401927, 19402046..19402208,19402333..19403058,19403392..19403464, 19403758..19403840,19404140..19404178,19405095..19405172, 19405731..19405886,19406093..19406158,19407091..19407171, 19408291..19408353,19408691..19408798,19409575..19409658, 19409841..19409912,19410069..19410127,19410308..19410363, 19410460..19411491)) /locus_tag="TCM_028919" /product="ATP-dependent peptidases,nucleotide binding,serine-type endopeptidases,DNA helicases,ATP binding,damaged DNA binding,nucleoside-triphosphatases isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s19200.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s19200.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc785t10; alternateUTRof:Thecc1EG028919t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4469t2" mRNA complement(join(19402767..19403058,19403392..19403464, 19403758..19403840,19404140..19404178,19405095..19405172, 19405731..19405886,19406093..19406158,19407091..19407171, 19408291..19408353,19408691..19408798,19409575..19409658, 19409841..19409912,19410069..19410127,19410308..19410363, 19410460..19411758,19417379..19417894,19421490..19421801)) /locus_tag="TCM_028919" /product="ATP-dependent peptidases,nucleotide binding,serine-type endopeptidases,DNA helicases,ATP binding,damaged DNA binding,nucleoside-triphosphatases isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s19200.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s19200.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4469t2" CDS complement(join(19402888..19403058,19403392..19403464, 19403758..19403840,19404140..19404178,19405095..19405172, 19405731..19405886,19406093..19406158,19407091..19407171, 19408291..19408353,19408691..19408798,19409575..19409658, 19409841..19409912,19410069..19410127,19410308..19410363, 19410460..19411178)) /locus_tag="TCM_028919" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ATP-dependent peptidases,nucleotide binding,serine-type endopeptidases,DNA helicases,ATP binding,damaged DNA binding,nucleoside-triphosphatases isoform 1" /protein_id="EOY26966.1" /db_xref="Phytozome:POPTR_0001s19200.1" /db_xref="TAIR:AT5G50340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GH29" /translation="MKAIRSIYYTHKHFLLLNPTRIPISISFLSRHFHLTNPRFALNF PETDGTDKTPRVWTVYEPLTGELSIRSSKQKSTNQDVDSGSGDEENADFETERTYGKA KNANWSNGTKIQKGVSGSNDRARYSPKENTDGMSRKKTFSVNGLGLDIVGNKKKGKGK VRWVCEDCGYSDGQWWGVCRSCDRSGTMKRFTEGETKNRGLEFSETVLRSWLPKDAGD VEPVRLMDVNCGIKKMDYRIPLLGPFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL LQMAALIAEGQDSDEPASVVYVSGEESVEQISSRAERMKIGANDLFLYSGTDIEDILM KIQPLSPRALIVDSIQTVYLKEVTGSAGGLSQVRECTSALLRFAKKTNIPVLLVGHVT KSGDIAGPRVLEHIVDAVLYLEGEKCSSHRLLRSVKNRFGSTDELGVFEMSQLGLQAV SNPSEMFLSDQNSDSEFLAGLAVAVIMDGSRAFLIEIQALCVSSSTVSRHVNGIQASR ADMIISVLAKQAGLKIQENAVFLNVVSGVSLTETAGDLAIAASICSSFLEFPIPNGVA FIGEIGLGGELRMVPRMDKRVSTVAKLGYKKCIVPMSAEKSLATLDCGEMEIIGCKDL KEVINNVFTKH" CDS complement(join(19402888..19403058,19403392..19403464, 19403758..19403840,19404140..19404178,19405095..19405172, 19405731..19405886,19406093..19406158,19407091..19407171, 19408291..19408353,19408691..19408798,19409575..19409658, 19409841..19409912,19410069..19410127,19410308..19410363, 19410460..19411178)) /locus_tag="TCM_028919" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ATP-dependent peptidases,nucleotide binding,serine-type endopeptidases,DNA helicases,ATP binding,damaged DNA binding,nucleoside-triphosphatases isoform 1" /protein_id="EOY26967.1" /db_xref="Phytozome:POPTR_0001s19200.1" /db_xref="TAIR:AT5G50340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GH29" /translation="MKAIRSIYYTHKHFLLLNPTRIPISISFLSRHFHLTNPRFALNF PETDGTDKTPRVWTVYEPLTGELSIRSSKQKSTNQDVDSGSGDEENADFETERTYGKA KNANWSNGTKIQKGVSGSNDRARYSPKENTDGMSRKKTFSVNGLGLDIVGNKKKGKGK VRWVCEDCGYSDGQWWGVCRSCDRSGTMKRFTEGETKNRGLEFSETVLRSWLPKDAGD VEPVRLMDVNCGIKKMDYRIPLLGPFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL LQMAALIAEGQDSDEPASVVYVSGEESVEQISSRAERMKIGANDLFLYSGTDIEDILM KIQPLSPRALIVDSIQTVYLKEVTGSAGGLSQVRECTSALLRFAKKTNIPVLLVGHVT KSGDIAGPRVLEHIVDAVLYLEGEKCSSHRLLRSVKNRFGSTDELGVFEMSQLGLQAV SNPSEMFLSDQNSDSEFLAGLAVAVIMDGSRAFLIEIQALCVSSSTVSRHVNGIQASR ADMIISVLAKQAGLKIQENAVFLNVVSGVSLTETAGDLAIAASICSSFLEFPIPNGVA FIGEIGLGGELRMVPRMDKRVSTVAKLGYKKCIVPMSAEKSLATLDCGEMEIIGCKDL KEVINNVFTKH" CDS complement(join(19403420..19403464,19404140..19404178, 19405095..19405172,19405731..19405886,19406093..19406158, 19407091..19407171,19408291..19408353,19408691..19408798, 19409575..19409658,19409841..19409912,19410069..19410127, 19410308..19410363,19410460..19411178)) /locus_tag="TCM_028919" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="ATP-dependent peptidases,nucleotide binding,serine-type endopeptidases,DNA helicases,ATP binding,damaged DNA binding,nucleoside-triphosphatases isoform 3" /protein_id="EOY26968.1" /db_xref="Phytozome:POPTR_0001s19200.1" /db_xref="TAIR:AT5G50340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GH29" /translation="MKAIRSIYYTHKHFLLLNPTRIPISISFLSRHFHLTNPRFALNF PETDGTDKTPRVWTVYEPLTGELSIRSSKQKSTNQDVDSGSGDEENADFETERTYGKA KNANWSNGTKIQKGVSGSNDRARYSPKENTDGMSRKKTFSVNGLGLDIVGNKKKGKGK VRWVCEDCGYSDGQWWGVCRSCDRSGTMKRFTEGETKNRGLEFSETVLRSWLPKDAGD VEPVRLMDVNCGIKKMDYRIPLLGPFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL LQMAALIAEGQDSDEPASVVYVSGEESVEQISSRAERMKIGANDLFLYSGTDIEDILM KIQPLSPRALIVDSIQTVYLKEVTGSAGGLSQVRECTSALLRFAKKTNIPVLLVGHVT KSGDIAGPRVLEHIVDAVLYLEGEKCSSHRLLRSVKNRFGSTDELGVFEMSQLGLQAV SNPSEMFLSDQNSDSEFLAGLAVAVIMDGSRAFLIEIQALCVSSSTVSRHVNGIQASR ADMIISVLAKQAGLKIQENLLRVSYSQWSCVHW" mRNA complement(join(19404140..19404178,19405095..19405172, 19405731..19405886,19406093..19406158,19407087..19407171, 19408291..19408353,19408691..19408798,19409575..19409658, 19409841..19409912,19410069..19410127,19410308..19410363, 19410460..19411401)) /locus_tag="TCM_028919" /product="ATP-dependent peptidases,nucleotide binding,serine-type endopeptidases,DNA helicases,ATP binding,damaged DNA binding,nucleoside-triphosphatases isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s19200.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s19200.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc839t2_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4469t2" CDS complement(join(19406097..19406158,19407087..19407171, 19408291..19408353,19408691..19408798,19409575..19409658, 19409841..19409912,19410069..19410127,19410308..19410363, 19410460..19411178)) /locus_tag="TCM_028919" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="ATP-dependent peptidases,nucleotide binding,serine-type endopeptidases,DNA helicases,ATP binding,damaged DNA binding,nucleoside-triphosphatases isoform 4" /protein_id="EOY26969.1" /db_xref="Phytozome:POPTR_0001s19200.1" /db_xref="TAIR:AT5G50340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GH29" /translation="MKAIRSIYYTHKHFLLLNPTRIPISISFLSRHFHLTNPRFALNF PETDGTDKTPRVWTVYEPLTGELSIRSSKQKSTNQDVDSGSGDEENADFETERTYGKA KNANWSNGTKIQKGVSGSNDRARYSPKENTDGMSRKKTFSVNGLGLDIVGNKKKGKGK VRWVCEDCGYSDGQWWGVCRSCDRSGTMKRFTEGETKNRGLEFSETVLRSWLPKDAGD VEPVRLMDVNCGIKKMDYRIPLLGPFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL LQMAALIAEGQDSDEPASVVYVSGEESVEQISSRAERMKIGANDLFLYSGTDIEDILM KIQPLSPRALIVDSIQTVYLKEVTGSAGGLSQVRECTSALLRFAKKTNIPVLLVGHVT KSGDIAGPRVLEHIVDAVLYLEVGGKVLISSFASICEESFWVN" mobile_element 19415937..19416176 /note="source:INTACT714_F310_scaffold_9-int 10192 10440" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19417644..19422321 /note="source:CACAO_M_E49214_F2_scaffold_6 1 4678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19422976..19423123 /note="source:scaffold_7_CACTA_0795 2850 3013" /mobile_element_type="transposon:TIR/CACTA" gene 19423193..19427237 /locus_tag="TCM_028921" /note="dbxref CacaoGD:Thecc1EG028921" mRNA join(19423193..19423772,19424197..19424395, 19424485..19424570,19425323..19426096,19426189..19427237) /locus_tag="TCM_028921" /product="Actin binding family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30146.m003482" /inference="similar to AA sequence:ricco:30146.m003482" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04700t00001" mRNA join(19423505..19423772,19424197..19424395, 19424482..19424570,19425323..19426096,19426189..19427231) /locus_tag="TCM_028921" /product="Actin binding family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30146.m003482" /inference="similar to AA sequence:ricco:30146.m003482" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4370t2; inference alignment:Newbler:10:TSA:cgbaB_g04700t00001" CDS join(19424245..19424395,19424482..19424570, 19425323..19426096,19426189..19427067) /locus_tag="TCM_028921" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30146.m003482" /codon_start=1 /product="Actin binding family protein, putative isoform 2" /protein_id="EOY26971.1" /db_xref="TAIR:AT1G52080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GH30" /translation="MMLKAKRDLRPLLVKFGLAVALSFAGFLFSRLRTRKFRPYLPRP PSPRVSADRGSKVDSGGKDQYKDDAQALKISPTSGPEEMHMQRASVDNASVGLSPSIR HGGDGFLVPEFNVLVEEYDFSATGAGPSPKKEVETPRSDVDASRTFRSAEKDNYEEEI KHLRNMVRMLRERERNLEVQLLEYYGLKEQETAALELQNRLKINNMEAKLFTLKIESL QSENRRLESQVADHAKVVAELETARSRIKLLKKKLRHEAEQNREQILNLQKRVARLQE QELKALADNQDIESKLQRLKVLEGEADELRKSNRSLQTENSELAQKLESTQILANSVL EDPETEALNEMSNCLRQENEDLTKQIEQLQADRCADVEELVYLRWINACLRYELRNYQ PPPGKTVARDLSKSLSPKSEEKAKKLILEYAHTEGMGDRGMNSMDFDCDQWSSSQASY GTDTGELDDSSFENSSATKTTNSGKIKFFKNLRRLLRGKDSHHHHSQVSSTSKTDHLE DVDSPTWSSGRGNDSITMLQSHSDRVTTPSLSSCRPSLDIPRWRSLNVDHIKDVENFR RSSDGSSYGYKRFILGRDDASESPLEHLLDQDSDSKSDLVKFAEVLKESEPRRGKIHK KSASII" CDS join(19424245..19424395,19424485..19424570, 19425323..19426096,19426189..19427067) /locus_tag="TCM_028921" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30146.m003482" /codon_start=1 /product="Actin binding family protein, putative isoform 1" /protein_id="EOY26970.1" /db_xref="TAIR:AT1G52080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GH30" /translation="MMLKAKRDLRPLLVKFGLAVALSFAGFLFSRLRTRKFRPYLPRP PSPRVSDRGSKVDSGGKDQYKDDAQALKISPTSGPEEMHMQRASVDNASVGLSPSIRH GGDGFLVPEFNVLVEEYDFSATGAGPSPKKEVETPRSDVDASRTFRSAEKDNYEEEIK HLRNMVRMLRERERNLEVQLLEYYGLKEQETAALELQNRLKINNMEAKLFTLKIESLQ SENRRLESQVADHAKVVAELETARSRIKLLKKKLRHEAEQNREQILNLQKRVARLQEQ ELKALADNQDIESKLQRLKVLEGEADELRKSNRSLQTENSELAQKLESTQILANSVLE DPETEALNEMSNCLRQENEDLTKQIEQLQADRCADVEELVYLRWINACLRYELRNYQP PPGKTVARDLSKSLSPKSEEKAKKLILEYAHTEGMGDRGMNSMDFDCDQWSSSQASYG TDTGELDDSSFENSSATKTTNSGKIKFFKNLRRLLRGKDSHHHHSQVSSTSKTDHLED VDSPTWSSGRGNDSITMLQSHSDRVTTPSLSSCRPSLDIPRWRSLNVDHIKDVENFRR SSDGSSYGYKRFILGRDDASESPLEHLLDQDSDSKSDLVKFAEVLKESEPRRGKIHKK SASII" gene 19427412..19432012 /locus_tag="TCM_028922" /note="dbxref CacaoGD:Thecc1EG028922" mRNA join(19427412..19427818,19428592..19428901, 19429777..19430036,19430137..19430433,19430550..19430836, 19430928..19430993,19431164..19431385,19431470..19432012) /locus_tag="TCM_028922" /product="Poly(A) binding protein 6, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s19230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022364t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016951001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc790t8" mRNA join(19427412..19427818,19428592..19428901, 19429777..19430036,19430137..19430433,19430550..19430836, 19430928..19430993,19431164..19431385,19431475..19432012) /locus_tag="TCM_028922" /product="Poly(A) binding protein 6, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s19230.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016951001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b027967t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc790t8" CDS join(19427557..19427818,19428592..19428901, 19429777..19430036,19430137..19430433,19430550..19430836, 19430928..19430993,19431164..19431385,19431475..19431648) /locus_tag="TCM_028922" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Poly(A) binding protein 6, putative isoform 3" /protein_id="EOY26974.1" /db_xref="Phytozome:GSVIVT01016951001" /db_xref="TAIR:AT3G16380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U086" /translation="MPSAPPPSLSLPPLPLPLPATTVAGGAWNPLQRASLYVGDLDPD VTELDLFRIFSTVAPIVSLRLCRCLRTGKSLRYGYINFFSDAHASKALACLNHTDLKG KPVRIMWSHRDPFPRKIGLANLFVKNLDPTVTSARLEGIFCRFGTILSCKVAEENGKS KGFGFVQFDSEESAKAAITALHGTMLEGKKLYVSKFVKKSERTAAAEEEKFTNLYVKN LVDGMTEDLLEEMFSRYGKVCSVVVMKDGKGSSRGFGFVNFQSPDDAKKALEAMNGVQ LGSKNLFVGRAQKKAERTELLKHKYKDVFNSRFEKLKASNLYVKNLNVSIDDKKLQEL FGQFGKITSARVMRYDNGMSKGFGFVCFSCPREAMSALHGLNGTFFEGRNLYVAVAQR KEDRRLELQNYFVQNTPVQSSYQASCKAVSPQFCPFYFSIPPCPPLFPLQPQPTLSQN SITNVGIQYPFATSHDQQNFSYDLMRNMHPCNAGIRKDWVCRQSPMTYANPDVRIQDL GRGNSGNKKVGFRKKGNRKYEPAEKSSVAVAAIQSVAAASPGSSKKNNENLSCPFVEN LEVTGELLEIKNSDVLKLLNSNSMAVRDKPFQVLKKANARTSRDAVTFANPKSARCLS Y" CDS join(19427557..19427818,19428592..19428901, 19429777..19430036,19430137..19430433,19430550..19430836, 19430928..19430993,19431164..19431385,19431470..19431499) /locus_tag="TCM_028922" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022364t1" /codon_start=1 /product="Poly(A) binding protein 6, putative isoform 1" /protein_id="EOY26972.1" /db_xref="Phytozome:GSVIVT01016951001" /db_xref="TAIR:AT3G16380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U086" /translation="MPSAPPPSLSLPPLPLPLPATTVAGGAWNPLQRASLYVGDLDPD VTELDLFRIFSTVAPIVSLRLCRCLRTGKSLRYGYINFFSDAHASKALACLNHTDLKG KPVRIMWSHRDPFPRKIGLANLFVKNLDPTVTSARLEGIFCRFGTILSCKVAEENGKS KGFGFVQFDSEESAKAAITALHGTMLEGKKLYVSKFVKKSERTAAAEEEKFTNLYVKN LVDGMTEDLLEEMFSRYGKVCSVVVMKDGKGSSRGFGFVNFQSPDDAKKALEAMNGVQ LGSKNLFVGRAQKKAERTELLKHKYKDVFNSRFEKLKASNLYVKNLNVSIDDKKLQEL FGQFGKITSARVMRYDNGMSKGFGFVCFSCPREAMSALHGLNGTFFEGRNLYVAVAQR KEDRRLELQNYFVQNTPVQSSYQASCKAVSPQFCPFYFSIPPCPPLFPLQPQPTLSQN SITNVGIQYPFATSHDQQNFSYDLMRNMHPCNAGIRKDWVCRQSPMTYANPDVRIQDL GRGNSGNKKVGFRKKGNRKYEPAEKSSVAVAAIQSVAAASPGSSKKNNENLSCPFVEN LERRLQESYWR" mRNA join(19427693..19427818,19428592..19428901, 19429777..19430036,19430137..19430433,19430550..19430836, 19430928..19430993,19431164..19431385,19431468..19431946) /locus_tag="TCM_028922" /product="Poly(A) binding protein 6, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s19230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022364t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016951001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4364t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc790t8" CDS join(19428651..19428901,19429777..19430036, 19430137..19430433,19430550..19430836,19430928..19430993, 19431164..19431385,19431468..19431509) /locus_tag="TCM_028922" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022364t1" /codon_start=1 /product="Poly(A) binding protein 6, putative isoform 2" /protein_id="EOY26973.1" /db_xref="Phytozome:GSVIVT01016951001" /db_xref="TAIR:AT3G16380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U086" /translation="MWSHRDPFPRKIGLANLFVKNLDPTVTSARLEGIFCRFGTILSC KVAEENGKSKGFGFVQFDSEESAKAAITALHGTMLEGKKLYVSKFVKKSERTAAAEEE KFTNLYVKNLVDGMTEDLLEEMFSRYGKVCSVVVMKDGKGSSRGFGFVNFQSPDDAKK ALEAMNGVQLGSKNLFVGRAQKKAERTELLKHKYKDVFNSRFEKLKASNLYVKNLNVS IDDKKLQELFGQFGKITSARVMRYDNGMSKGFGFVCFSCPREAMSALHGLNGTFFEGR NLYVAVAQRKEDRRLELQNYFVQNTPVQSSYQASCKAVSPQFCPFYFSIPPCPPLFPL QPQPTLSQNSITNVGIQYPFATSHDQQNFSYDLMRNMHPCNAGIRKDWVCRQSPMTYA NPDVRIQDLGRGNSGNKKVGFRKKGNRKYEPAEKSSVAVAAIQSVAAASPGSSKKNNE NLSCPFVENLESEGYRRAIGDKEF" gene complement(19432137..19434318) /locus_tag="TCM_028923" /note="dbxref CacaoGD:Thecc1EG028923" mRNA complement(join(19432137..19432421,19432513..19432768, 19432938..19433171,19433307..19433437,19433540..19434318)) /locus_tag="TCM_028923" /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30146.m003475" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041540t1" /inference="similar to AA sequence:ricco:30146.m003475" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16087t1" CDS complement(join(19432228..19432421,19432513..19432768, 19432938..19433171,19433307..19433437,19433540..19433789)) /locus_tag="TCM_028923" /note="dbxref ricco:30146.m003475; paralog of Thecc1EG041540t1" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /protein_id="EOY26975.1" /db_xref="TAIR:AT3G16370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU14" /translation="MDAYSTRLLFLVFAFASVSRGYAQQSTTVVPAIITFGDSVVDVG NNDYLPTIFKANYPPYGRDFDNHQPTGRFCNGKLATDITAKTLGFTTYPPAYLSPEAS GKNLLIGANFASAGSGYDDNAATLNHAITLTQQVEYFKEYQAKLAKVAGSSKSASIIK DALYVLSAGSGDFLQNYYVNPLINHVYTPDQYGSILIDAFTSFVKNLYGLGARKIGVT SLPPLGCIPLARTLFGYHEKGCVSRFNTDAQQFNKKLNSAAANLQKQHPGLKIVVFDI FKALYDVVNSPSNYGFVEATRGCCGTGTVETTSFLCNPKTPGTCPNATQYVFWDSVHP SEAANQVLADALITQGLALI" mobile_element 19436128..19436261 /note="source:CACAO_on_SS_E42_scaffold_2 23387 23521" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19436321..19436652 /note="source:CACAO_on_SS_E42_scaffold_2 24149 24521" /mobile_element_type="transposon:TIR/Mutator" gene complement(19436909..19445901) /locus_tag="TCM_028924" /note="dbxref CacaoGD:Thecc1EG028924" mRNA complement(join(19436909..19437882,19438298..19438487, 19438589..19438651,19438785..19438911,19439032..19439249, 19439817..19439977,19440314..19440394,19440535..19440606, 19440869..19440940,19441103..19441238,19442075..19442553, 19442833..19443388,19445619..19445901)) /locus_tag="TCM_028924" /product="Leucine-rich repeat transmembrane protein kinase protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028937t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s12400.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1640t3_C1" CDS complement(join(19437447..19437882,19438298..19438487, 19438589..19438651,19438785..19438911,19439032..19439249, 19439817..19439977,19440314..19440394,19440535..19440606, 19440869..19440940,19441103..19441238,19442075..19442553, 19442833..19443388,19445619..19445775)) /locus_tag="TCM_028924" /note="paralog of Thecc1EG028937t1" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase protein, putative" /protein_id="EOY26976.1" /db_xref="Phytozome:POPTR_0019s12400.1" /db_xref="TAIR:AT4G29990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NEQ3" /translation="MMSRHELFIVLNNLLPLFILVFGITSSWDTPTLTEATKHDVGRR KLATQNNPGFISIDCGVEEDYLNGETGIYYKSDKDFIETGENHDISASASRNNYYVVQ WREYGNLRSFPDGKKNCYTLKPEQGRNNSYRIRASFLYGNYDGKNEIPEFELYVGVNY WDTVRLPSLWYMLFLDIIYFFTADTGYVCLVNTGLGIPFISALELRLSNESAFNTTYS VALGNVRASDLGISSNHSFRYKDDGYDRIWQPLQFPSSVPISPSLNIANQVDDLYKVP AEVLRTAIQPVNGSRSLNYTYYSSRFPFSQYLVCFYFAEIEETARQDRLREFTITLNG FKIGPITLEYLKPLPVSSQNLPVQGVINFTIDATEESDLPPILNAMEFYQVLPLPYSP TDPTDGDAIMAIKQTYNINKDDWQGDPCLPKEYTWSGLTCRFNGTPRIISLNLSASKL TGAISLSFSNLQAIESLDLSYNELTGPVPEVLAQLPNLKVLNLSGNKLAGSVPQSLKD KSDDGSLVLRLAENPDLCQMDPCHDKEKKKFVVPVVASIVSVLVLIFFSILIVFCMIR RRRQQEPLIKSSEEGSFKSKNRPFSYSQIVKITGNFTTVVGEGGFGKVYLGSLNDEAP VAVKLLSPSSKQGFKEFRAEVQLLMIVHHRNLVSLIGYCDENGKMALIYEYMANGNLR QHLSDTNGNVLKWKERLQIAIDAAYGLEYLHNGCKPSIVHRDLKSANILLTESMQAKI ADFGLSKIFLTENESHISTCPAGTPGYLDPEFHCSGNLNKKSDVYSFGIVLFELITGQ PAIIRIPDCGVHILQWLSPIVEKGDIRNIIDPSLQGEFDVNAAWKVVDIAMSCAQPAS IQRPDMSLVLTELKECMAIEMAHGRTQRVLSNMTTSSNSPEISLLNVDSELNLLNPIP R" mobile_element 19437829..19438423 /note="source:CACAO_hAT_E654_scaffold_2 802 1393" /mobile_element_type="transposon:TIR/hAT" mobile_element 19446297..19446598 /note="source:scaffold_7_CACTA_0789 1867 2165" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19446803..19451368 /note="source:CACAO_M_S_E32591_F276_scaffold_4 1 4624" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19451371..19452048 /note="source:INTACT622_F276_scaffold_7-int 4478 5155" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19452046..19454285 /note="source:INTACT622_F276_scaffold_7-int 4632 6879" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19454284..19455866 /note="source:scaffold_6_CACTA_0702 12993 14554" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19454852..19458562 /note="source:INTACT738_F9_scaffold_7-int 483 4122" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19458670..19460383 /note="source:CACAO_M_E12028_F265_scaffold_2 1 1732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19460233..19460402) /note="source:scaffold_3_CACTA_0385 7629 7799" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19460903..19460998 /note="source:INTACT745_F320_scaffold_4-int 6331 6422" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19461222..19462659 /note="source:INTACT745_F320_scaffold_4-int 6585 7986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19461236..19463021) /note="source:INTACT505_F28_scaffold_3-int 1786 3571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19464166..19464200) /note="source:INTACT402_F76_scaffold_5-int 288 322" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19464201..19464629 /note="source:CACAO_M_E35271_F316_scaffold_5 1 431" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19464491..19464648 /note="source:INTACT639_F76_scaffold_3-int 401 546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19464632..19464737) /note="source:CACAO_M_E71405_F316_scaffold_10 4449 4555" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19464663..19465722 /note="source:scaffold_4_CACTA_0482 2084 3145" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19464772..19469151 /note="source:CACAO_M_E57337_F76_scaffold_9 1068 5490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19467171..19469187) /note="source:CACAO_M_S_E119572_F76_scaffold_9 35 2076" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19469080..19469204) /note="source:CACAO_M_S_E5860_F197_scaffold_2 11490 11626" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19471622..19471689 /note="source:CACAO_M_S_E32519_F76_scaffold_3 412 475" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19476977..19484546) /locus_tag="TCM_028929" /note="dbxref CacaoGD:Thecc1EG028929" mRNA complement(join(19476977..19477641,19478047..19478236, 19478329..19478391,19478526..19478652,19478771..19478988, 19479430..19479537,19479634..19479794,19480129..19480209, 19480349..19480420,19480693..19480764,19480927..19481062, 19481581..19481700,19481806..19482284,19482568..19483123, 19484349..19484546)) /locus_tag="TCM_028929" /product="Leucine-rich repeat transmembrane protein kinase protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016937001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028924t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s12440.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4393t1" mobile_element 19477588..19478172 /note="source:CACAO_hAT_E654_scaffold_2 802 1393" /mobile_element_type="transposon:TIR/hAT" CDS complement(join(19478987..19478988,19479430..19479537, 19479634..19479794,19480129..19480209,19480349..19480420, 19480693..19480764,19480927..19481062,19481581..19481700, 19481806..19482284,19482568..19483123,19484349..19484505)) /locus_tag="TCM_028929" /note="paralog of Thecc1EG028924t1" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase protein, putative" /protein_id="EOY26977.1" /db_xref="Phytozome:POPTR_0019s12440.1" /db_xref="TAIR:AT4G29990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NEQ3" /translation="MVGRHKLFIVLHNLLPLFIFVFGITSSWDTPTLTEATKQDVGRR KLATQNNPGFISIDCGVEEDYLNDETGIFYKSDKDFIGTGENHDISPSASGTNYYPVH WREYRNLRSFPNGKKNCYTLKPEQGRNNSYRIRASFLYGNYDDKNKIPEFELYVGVNY WDTVRLPSVWYMLFLEIIHFFTADTGYVCLVNTGFGVPFISALELRLSNDSAFNTTNS VALGNVKTVDLGISSNNSFRYKDDGYDRIWLPLQFPSSVPISPSLNIANQGNDLYKVP AEVLRTAIRPVNGSRSLNYTYHSSLFPSSQYLVCFYFAEVVETARQDQLRKFTITLNG VKSKPITLEYLKPLSVSSQNLPVQGVINFTIDATEESDLPPILNAMEFYRVLPLPFSP TATTDGKKQELRCNQPITTWDKQKKNLIQALFLYLPSKQLAVIVEGDAIMAIKQTYNI IKDDWQGDPCLPEVYTWSGLTCRFNGTPRIISLNLSASKLMGAISLSFSDLQAIESLD LSNNELTGPVPEVLSQLPNLKVLNLSGNQLTGLVPQSLKDKSDNGSLVLSLPENPDLC QMDSCHDKEKNKFVVPVVASIVSVLVLIFLSILFVFCIIRRRRQGVSRLSLHDNVTTR DAVYFLSLEHILDLITVDILHEC" mobile_element complement(19485572..19485635) /note="source:CACAO_PIF_E144_scaffold_10 6002 6065" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(19486071..19490773) /note="source:INTACT477_F225_scaffold_9-int 845 4806" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19490706..19491412 /note="source:CACAO_LINE_E_177_scaffold_6 1 707" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(19491395..19491447) /note="source:CACAO_M_S_E89247_F225_scaffold_8 767 819" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19491446..19491537 /note="source:scaffold_3_CACTA_0396 892 983" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19491537..19492309) /note="source:CACAO_M_S_E89247_F225_scaffold_8 36 785" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19495308..19495655 /note="source:scaffold_5_CACTA_0586 11422 11775" /mobile_element_type="transposon:TIR/CACTA" gene 19500872..19502640 /locus_tag="TCM_028931" /note="dbxref CacaoGD:Thecc1EG028931" mRNA join(19500872..19501617,19501962..19502028, 19502262..19502640) /locus_tag="TCM_028931" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.49 coverage" CDS join(19501471..19501617,19501962..19502028, 19502262..19502401) /locus_tag="TCM_028931" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26978.1" /translation="MPEVKWDLLEFDADLKGKRMMTCFIKENRRKLGVENSRVGPKKI VPLVKVLPSQVDMGGRVFLWGGYIGMLCNTEAKLVHKNSVQQREPSIPTPSRLTTVSY SIFGVMTSPCLHHDF" mobile_element 19503553..19503633 /note="source:CACAO_hAT_E1607_scaffold_4 3341 3421" /mobile_element_type="transposon:TIR/hAT" mobile_element 19503564..19504698 /note="source:INTACT67_F28_scaffold_2-int 1 1145" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19504704..19504743) /note="source:INTACT67_F28_scaffold_2-int 1070 1109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19504736..19504785) /note="source:INTACT675_F28_scaffold_3-int 4748 4795" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19504737..19504774 /note="source:INTACT505_F28_scaffold_3-int 17396 17433" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19504784..19508349) /note="source:CACAO_M_S_E16720_F28_scaffold_2 1 3590" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19508197..19512280 /locus_tag="TCM_028932" /note="dbxref CacaoGD:Thecc1EG028932" mRNA join(19508197..19508375,19508551..19508619, 19509165..19509261,19509372..19509447,19510584..19510939, 19511030..19511160,19511337..19511446,19511598..19511652, 19511733..19512280) /locus_tag="TCM_028932" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(19508567..19508619,19509165..19509261, 19509372..19509447,19510584..19510939,19511030..19511160, 19511337..19511446,19511598..19511652,19511733..19511970) /locus_tag="TCM_028932" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26979.1" /translation="MITLTLCLLCRGRIRRSRLTEDYLLKGFKVPTPNLQKNNRLRDN VYGFMWLWAMEAILAFQKLVAFSTPKDNVYPWHALSHHDGEHHNDADDGQHDEPGVHI DHNVIDVDGENVTHVDDVLDDSVAGDVTFQLVDAEGDHVPQADVIVDASAGEEGDLHS VEAEGNHVLQANVVVEAVAAGDENLASAQAEGDHSTLEGSASRLSSLKLSNVHHHKAL ISNLIERARVKMASKCITSLCNIEILGDQGLDFFTRLKDPKEEMASEQIDAHLSVLSY PTEAKRSTMKIIDELRGHSVVVKIDLVKWTIKVVDSAKTSAAKDNRVRATQMTPLMMM MPIVCHQSGYFNKTRHKTRDSTSIPLEIHLPKSLVHR" mobile_element 19512651..19512957 /note="source:scaffold_4_CACTA_0511 12999 13324" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19513029..19516824 /note="source:CACAO_Mutator_E1998_scaffold_9 3570 10214" /mobile_element_type="transposon:TIR/Mutator" gene complement(19517860..19518369) /locus_tag="TCM_028935" /note="dbxref CacaoGD:Thecc1EG028935" mRNA complement(join(19517860..19518136,19518238..19518369)) /locus_tag="TCM_028935" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(19518012..19518136,19518238..19518343)) /locus_tag="TCM_028935" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26980.1" /translation="MPGEYPRSFLITFVIFALVLSPMLPCDAVRLIGHPAPIEKQPIC PVCVCCTDPPPGHCCRCCASSIGSQRSQMGSP" mobile_element complement(19519431..19519468) /note="source:CACAO_Mutator_E592_scaffold_3 15989 16029" /mobile_element_type="transposon:TIR/Mutator" gene complement(19519640..19523829) /locus_tag="TCM_028936" /note="dbxref CacaoGD:Thecc1EG028936" mRNA complement(join(19519640..19519952,19520038..19520101, 19520237..19520315,19520416..19520485,19520625..19520708, 19520839..19520891,19521013..19521072,19521181..19521385, 19521496..19521577,19522334..19522433,19522823..19522854, 19523742..19523829)) /locus_tag="TCM_028936" /product="Myo-inositol oxygenase 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016929001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028939t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016929001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4400t1" CDS complement(join(19519926..19519952,19520038..19520101, 19520237..19520315,19520416..19520485,19520625..19520708, 19520839..19520891,19521013..19521072,19521181..19521385, 19521496..19521577,19522334..19522433,19522823..19522853)) /locus_tag="TCM_028936" /note="paralog of Thecc1EG028939t1" /codon_start=1 /product="Myo-inositol oxygenase 1" /protein_id="EOY26981.1" /db_xref="Phytozome:GSVIVT01016929001" /db_xref="TAIR:AT1G14520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1S0" /translation="MAILIDQPEFLEAGFNKVDNVEKEMVFDGGFMVPQTNSFGYTFR DYHVESERQQGVENFYRTNHINQTYDFVKRMRKEYGKLNKVGMSIWECCELLNDVVDE SDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLAGFVHDLGKVLLHPSFEGLPQWAVVG DTYPVGCAFDKSIVHHKYFEENPDFYNSAYNTKYGVYSEGCGLNNVAKVNNTTWPPAA LFIIRYHSFYALHRSEAYKHLMSEEDVENLKWLQIFNKSKVRIDVEKVNPYYLSLIEK YFPAKLRW" mobile_element complement(19523724..19523818) /note="source:CACAO_hAT_E2982_scaffold_7 944 1034" /mobile_element_type="transposon:TIR/hAT" mobile_element 19523828..19524055 /note="source:CACAO_hAT_E71_scaffold_1 625 860" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(19523865..19524052) /note="source:CACAO_hAT_E2824_scaffold_6 138 328" /mobile_element_type="transposon:TIR/hAT" mobile_element 19523890..19524267 /note="source:CACAO_on_SS_E42_scaffold_2 24149 24521" /mobile_element_type="transposon:TIR/Mutator" gene complement(19524842..19530949) /locus_tag="TCM_028937" /note="dbxref CacaoGD:Thecc1EG028937" mRNA complement(join(19524842..19525219,19525276..19525509, 19525925..19526114,19526412..19526538,19526659..19526876, 19527521..19527681,19527999..19528079,19528220..19528291, 19528564..19528635,19528797..19528932,19529630..19530168, 19530278..19530354,19530556..19530949)) /locus_tag="TCM_028937" /product="Leucine-rich repeat transmembrane protein kinase protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s12860.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028924t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s12850.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS complement(join(19525132..19525219,19525276..19525509, 19525925..19526114,19526412..19526538,19526659..19526876, 19527521..19527681,19527999..19528079,19528220..19528291, 19528564..19528635,19528797..19528932,19529630..19530168, 19530278..19530354,19530556..19530861)) /locus_tag="TCM_028937" /note="paralog of Thecc1EG028924t1" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase protein, putative" /protein_id="EOY26982.1" /db_xref="Phytozome:POPTR_0019s12850.1" /db_xref="TAIR:AT4G29990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NEQ3" /translation="MIFRILQGDFSGFPLQITALLESLSISNLYKPLHLELTKIFSAS FIATSSALIASVTPTGLENIALVTPSESFKTPPTLAGCSEPLTTPSTLNNVPAESAVH ANCDIVGELYVVLNLCIPLSPPLTNLVKIINLRYIISTHPNVSPNRYRDDGYDRIWES GPFPSSVPIKTSSNIDSHGNDLYKLPVEVLRTAVQPVNGSRSLHYSYDSSGFPSSFHL FCFHFAEIVETAGQDRLREFIITLNDFKIGPITLEYLTPLSISSQIFPVQGVINFTID ATEESDLPPILNAMEFYRVLTLQYSPTDPSDGDAIMAIKQTYNINKDDWQGDPCLPKE YTWSGLTCRFNDTPRIISLNLSSSKLTGAISLSFSDLQAIESVDLSNNELEGPVPEVL AQLPNLKVLNLSGNKLTGSVPQSLKDKSDNGSLVLSLPENPDLSQMDPCHDKEKKKFV VPVVASIVTVLVLIFLSILIVFCIIRRRRQREPLIKSSKEGSFKSKNQPFTYSQIVKI TGNFTTIVGEGGFGKVYLGTLNDETPVAVKLLSQSSKQGFKEFSAEVQLLMIVHHRNL VSLVGYCDENGKMALIYEYMANGNLRQHLSGLEYLHNGCKPPIVHRDLKSANILLTES MQAKIADFGLSKIFLTENESHISTCPAGTPGYLDPEFHCSGNLNKKSDVYSFGIILFE LITGQPAIIRIPDCGVHILQWLSPIVEKGDIRNIIDPSLQGEFDVNAAWKVVDIAITE GMHGYRDGSRKNSKSAKQHDNIKQLT" mobile_element 19525456..19526050 /note="source:CACAO_hAT_E654_scaffold_2 802 1393" /mobile_element_type="transposon:TIR/hAT" mobile_element 19526565..19526618 /note="source:CACAO_hAT_E421_scaffold_1 1469 1522" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(19531923..19534463) /note="source:CACAO_on_SS_E42_scaffold_2 19406 21890" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(19536578..19537678) /note="source:scaffold_1_CACTA_0016 1414 2438" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19537678..19537879) /note="source:CACAO_M_E69946_F329_scaffold_9 377 567" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19537880..19537983 /note="source:INTACT782_F329_scaffold_10-int 5355 5462" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19539667..19540593 /note="source:CACAO_MITE_S161_scaffold_6 1 927" /mobile_element_type="transposon:TIR/MITE" mobile_element 19540864..19540967 /note="source:scaffold_4_CACTA_0505 18566 18677" /mobile_element_type="transposon:TIR/CACTA" gene complement(19543533..19547156) /locus_tag="TCM_028939" /note="dbxref CacaoGD:Thecc1EG028939" mRNA complement(join(19543533..19543967,19544053..19544134, 19544253..19544331,19544433..19544502,19544593..19544715, 19544846..19544898,19545020..19545079,19545188..19545392, 19545503..19545584,19546853..19547055)) /locus_tag="TCM_028939" /product="Myo-inositol oxygenase 1 isoform 5" /inference="alignment:exonerate- protein:2:ricco:30146.m003456" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011308t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s14360.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b027984t1a2; inference alignment:Newbler:10:TSA:cgbaL_g10356t00001" mRNA complement(join(19543703..19543967,19544053..19544331, 19544433..19544502,19544593..19544715,19544846..19544898, 19545020..19545079,19545188..19545392,19545503..19545584, 19546370..19546472,19546853..19546878)) /locus_tag="TCM_028939" /product="Myo-inositol oxygenase 1 isoform 4" /inference="alignment:exonerate- protein:2:ricco:30146.m003456" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028936t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s14360.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1688t4; inference alignment:Newbler:10:TSA:cgbaL_g10356t00001" mRNA complement(join(19543703..19543967,19544053..19544134, 19544253..19544331,19544433..19544499,19544591..19544715, 19544846..19544898,19545020..19545079,19545188..19545392, 19545503..19545584,19546370..19546472,19546853..19546878)) /locus_tag="TCM_028939" /product="Myo-inositol oxygenase 1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30146.m003456" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028936t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s14360.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1815t5; inference alignment:Newbler:10:TSA:cgbaL_g10356t00001" mRNA complement(join(19543703..19543967,19544053..19544134, 19544253..19544331,19544433..19544502,19544593..19544715, 19544846..19544898,19545020..19545079,19545188..19545392, 19545482..19545584,19546370..19546472,19546853..19546878)) /locus_tag="TCM_028939" /product="Myo-inositol oxygenase 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30146.m003456" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011308t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s14360.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1688t3; inference alignment:Newbler:10:TSA:cgbaL_g10356t00001" mRNA complement(join(19543710..19543967,19544053..19544134, 19544253..19544331,19544433..19544502,19544593..19544715, 19544846..19544898,19545020..19545079,19545188..19545392, 19545503..19545584,19546370..19546472,19546853..19547156)) /locus_tag="TCM_028939" /product="Myo-inositol oxygenase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30146.m003456" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028936t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016929001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10356t00001" CDS complement(join(19543941..19543967,19544053..19544134, 19544253..19544331,19544433..19544502,19544593..19544715, 19544846..19544898,19545020..19545079,19545188..19545392, 19545503..19545584,19546370..19546472,19546853..19546883)) /locus_tag="TCM_028939" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG028936t1" /codon_start=1 /product="Myo-inositol oxygenase 1 isoform 1" /protein_id="EOY26983.1" /db_xref="Phytozome:GSVIVT01016929001" /db_xref="TAIR:AT1G14520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1S0" /translation="MTILIDQPEFGVEAGFDKVDNVEKGMVLDGGFMVPQTNSFGHTF RDYHVESERQQGVENFYRTNHINQTYDFVKRMRKEHGKLNKVELSIWECCELLNDVVD ESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLAGLVHDLGKVLLHPGFGGLPQWAVV GDTYPVGCAFDKTIVHHKYFEENPDFYNSAYNTKHGVYSEGCGLNNVMMSWGHDDYMY LVAKENNTTLPPAALFIIRYHSFYALHRSEAYKHLMSEEDVENLKWLQIFNKYDLYSK SKVRIDVEKVKPYYLSLIEKYFPAKLRW" CDS complement(join(19543941..19543967,19544053..19544134, 19544253..19544331,19544433..19544502,19544593..19544715, 19544846..19544898,19545020..19545079,19545188..19545392, 19545482..19545584,19546370..19546428)) /locus_tag="TCM_028939" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011308t1" /codon_start=1 /product="Myo-inositol oxygenase 1 isoform 2" /protein_id="EOY26984.1" /db_xref="Phytozome:POPTR_0008s14360.1" /db_xref="TAIR:AT1G14520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1S0" /translation="MVLDGGFMVPQTNSFGHTFRDYHVESERQQGVENFYRTNHINQT YDFVSNSCFYVKRMRKEHGKLNKVELSIWECCELLNDVVDESDPDLDEPQIEHLLQTA EAIRKDYPDEDWLHLAGLVHDLGKVLLHPGFGGLPQWAVVGDTYPVGCAFDKTIVHHK YFEENPDFYNSAYNTKHGVYSEGCGLNNVMMSWGHDDYMYLVAKENNTTLPPAALFII RYHSFYALHRSEAYKHLMSEEDVENLKWLQIFNKYDLYSKSKVRIDVEKVKPYYLSLI EKYFPAKLRW" CDS complement(join(19543941..19543967,19544053..19544134, 19544253..19544331,19544433..19544502,19544593..19544715, 19544846..19544898,19545020..19545079,19545188..19545383)) /locus_tag="TCM_028939" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG011308t2" /codon_start=1 /product="Myo-inositol oxygenase 1 isoform 5" /protein_id="EOY26987.1" /db_xref="Phytozome:POPTR_0008s14360.1" /db_xref="TAIR:AT1G14520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1S0" /translation="MRKEHGKLNKVELSIWECCELLNDVVDESDPDLDEPQIEHLLQT AEAIRKDYPDEDWLHLAGLVHDLGKVLLHPGFGGLPQWAVVGDTYPVGCAFDKTIVHH KYFEENPDFYNSAYNTKHGVYSEGCGLNNVMMSWGHDDYMYLVAKENNTTLPPAALFI IRYHSFYALHRSEAYKHLMSEEDVENLKWLQIFNKYDLYSKSKVRIDVEKVKPYYLSL IEKYFPAKLRW" CDS complement(join(19544231..19544331,19544433..19544502, 19544593..19544715,19544846..19544898,19545020..19545079, 19545188..19545392,19545503..19545584,19546370..19546428)) /locus_tag="TCM_028939" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG028936t1" /codon_start=1 /product="Myo-inositol oxygenase 1 isoform 4" /protein_id="EOY26986.1" /db_xref="Phytozome:POPTR_0008s14360.1" /db_xref="TAIR:AT1G14520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1S0" /translation="MVLDGGFMVPQTNSFGHTFRDYHVESERQQGVENFYRTNHINQT YDFVKRMRKEHGKLNKVELSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDY PDEDWLHLAGLVHDLGKVLLHPGFGGLPQWAVVGDTYPVGCAFDKTIVHHKYFEENPD FYNSAYNTKHGVYSEGCGLNNVMMSWGHDDYMYLVAKENNTTLPPAALFIIRYHSFYA LHRSEAYKHLMSEEDVENLKWLQIFKYDFACF" CDS complement(join(19544299..19544331,19544433..19544499, 19544591..19544715,19544846..19544898,19545020..19545079, 19545188..19545392,19545503..19545584,19546370..19546428)) /locus_tag="TCM_028939" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG028936t1" /codon_start=1 /product="Myo-inositol oxygenase 1 isoform 3" /protein_id="EOY26985.1" /db_xref="Phytozome:POPTR_0008s14360.1" /db_xref="TAIR:AT1G14520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1S0" /translation="MVLDGGFMVPQTNSFGHTFRDYHVESERQQGVENFYRTNHINQT YDFVKRMRKEHGKLNKVELSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDY PDEDWLHLAGLVHDLGKVLLHPGFGGLPQWAVVGDTYPVGCAFDKTIVHHKYFEENPD FYNSAYNTKHGVYSEGCGLNNVMMSWGHDDYMYLVPKRTTQHCRQQLFSLLDTIHSMH CIGQKHTST" gene complement(19549933..19553842) /locus_tag="TCM_028940" /note="dbxref CacaoGD:Thecc1EG028940" mRNA complement(join(19549933..19550576,19550929..19551038, 19552298..19552367,19552731..19552905,19553329..19553842)) /locus_tag="TCM_028940" /product="RNA polymerase transcriptional regulation mediator-related isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016927001" /inference="similar to AA sequence:Phytozome:Glyma08g21290.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02530t00002" mRNA complement(join(19550107..19550576,19550929..19551038, 19552298..19552367,19552731..19552905,19553329..19553372, 19553486..19553647)) /locus_tag="TCM_028940" /product="RNA polymerase transcriptional regulation mediator-related isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016927001" /inference="similar to AA sequence:Phytozome:Glyma08g21290.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02530t00002; inference alignment:Newbler:10:TSA:cgbaB_g02530t00002; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc886t6" CDS complement(join(19550415..19550576,19550929..19551038, 19552298..19552367,19552731..19552905,19553329..19553585)) /locus_tag="TCM_028940" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNA polymerase transcriptional regulation mediator-related isoform 1" /protein_id="EOY26988.1" /db_xref="Phytozome:Glyma08g21290.2" /db_xref="TAIR:AT3G21350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIG1" /translation="MATPPVAPPQAAAAGNFEAPPPLPMQPPGTDMTGICFRDQLWLN TYPLDRNLIFDYFALSPFYDWTCNNEQLRMHSIHPLDISQLSKMTGVEYMLSEVMEPN LFVIRKQKRDGPEKVTPMLAYYILDGSIYQAPQLCNVFAARVGRALYYISKAFTTAAS KLEKIGYVDTENESETFESKGGKETIDFKEVKRVDHILASLQRKLPPAPPPPPFPEGF IPLATAEAEKDPENQQAVETQPPAIDPIIDQGPAKRMKF" CDS complement(join(19550415..19550576,19550929..19551038, 19552298..19552367,19552731..19552905,19553329..19553366)) /locus_tag="TCM_028940" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNA polymerase transcriptional regulation mediator-related isoform 2" /protein_id="EOY26989.1" /db_xref="Phytozome:Glyma08g21290.2" /db_xref="TAIR:AT3G21350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIG1" /translation="MHSIHPLDISQLSKMTGVEYMLSEVMEPNLFVIRKQKRDGPEKV TPMLAYYILDGSIYQAPQLCNVFAARVGRALYYISKAFTTAASKLEKIGYVDTENESE TFESKGGKETIDFKEVKRVDHILASLQRKLPPAPPPPPFPEGFIPLATAEAEKDPENQ QAVETQPPAIDPIIDQGPAKRMKF" mobile_element 19555127..19557265 /note="source:CACAO_M_S_E51565_F2_scaffold_4 11900 13997" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19557026..19566755 /locus_tag="TCM_028941" /note="dbxref CacaoGD:Thecc1EG028941" mRNA join(19557026..19557561,19560837..19561004, 19561888..19562437,19562727..19563205,19563378..19563504, 19563607..19563678,19563796..19563867,19563959..19564039, 19564305..19564450,19564528..19564742,19564874..19565000, 19565199..19565288,19565458..19565650,19565759..19566755) /locus_tag="TCM_028941" /product="Serine/threonine-protein kinase-transforming protein raf, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037727t1" /inference="similar to AA sequence:ricco:30146.m003474" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" mobile_element 19557178..19557276 /note="source:scaffold_7_CACTA_0779 1 100" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19557407..19558396 /note="source:INTACT166_F161_scaffold_4-int 1 1123" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19558404..19558513) /note="source:scaffold_6_CACTA_0714 13416 13513" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19558496..19559245 /note="source:INTACT166_F161_scaffold_4-int 1106 1821" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19559297..19559404) /note="source:CACAO_on_SS_E42_scaffold_2 19940 20043" /mobile_element_type="transposon:TIR/Mutator" CDS join(19560983..19561004,19561888..19562437, 19562727..19563205,19563378..19563504,19563607..19563678, 19563796..19563867,19563959..19564039,19564305..19564450, 19564528..19564742,19564874..19565000,19565199..19565288, 19565458..19565650,19565759..19566167) /locus_tag="TCM_028941" /note="dbxref ricco:30146.m003474; paralog of Thecc1EG037727t1" /codon_start=1 /product="Serine/threonine-protein kinase-transforming protein raf, putative" /protein_id="EOY26990.1" /db_xref="TAIR:AT4G29990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RQB2" /translation="MLNSLRAGFTSIDCGIVNGYTDESTSLYYYPDTLLEAMAEIGMN ANISDEYMTSASNQQLRTLRSFPNGSRNCYNLKVEIGKTILVRASFMYGNYDGLNLTP TFDLFLGVQEWTTVNFTGPETIVRKEIIHIPTTEDIDICLVKKGSTIPFISALELRPL PDSTYNLTTSEYLVLLKRTDIGSTTNGSIFRYNDDISDRIWSPPDSPNNVKPISDASN RGSLDDGDYKVPIPVMATAVTTTADNVTSLSFKWKPETKNCYAYLHFAEVENLQSNEL REFDISVNDELPIGTVTVKPSDKPQTWQSPFTFTGKDVEIKLNRTANSTHPPILNAVE IFMLYNFSKVPTERNDVEAIRGIRESLGVKKNWQGDPCFPADLHWDGVECEDIKSITT VNLRSWGLKGNIPKYFGNLTSIVTLDLSNNSLEGDVPDLLLHLRDLKLFNLSFNNLRG SVPPELIEKNGSDGFHLFLDGNPDLCLSGSCKKKQPVAAIVASVTAVVFVLLVVFSIS WKLKRIRKEHMPLEEARPLESRNNQFTYSEVVSITNNFEKVIGKGGFGTVYYGCLNDD TEVAVKMLSESSNQGSEQFQAEAKLLMTVHHKNLTSLIGYCNDGTNMGLIYEYMTNGN LECHLKDSDCHHMAADRNRNSLGWEQRLKIAIDAAQGLEYLHEGIKPPVIHRDVKSSN ILLDRKFHAKLADFGLSKAFKFESSSGVTTDKVCGTPGYLDPEYYISTRLTKQNDVYS FGVVLLEMITGQSAIIRRNNECIILVKWVTPMLERGDIQNILDQHLGVYDINSVWKAV DLAMTCVSSNPEARPNMSSTVMDLKVCLQMQMAWSKKQESRSAESIEIIPLNIGTGPG PSAR" mobile_element complement(19561618..19561724) /note="source:scaffold_10_CACTA_0127 10154 10244" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19568608..19573046 /note="source:INTACT665_F292_scaffold_6-int 1 4439" /mobile_element_type="retrotransposon:LTR/Copia" gene 19574944..19576595 /locus_tag="TCM_028944" /note="dbxref CacaoGD:Thecc1EG028944" mRNA join(19574944..19575082,19575165..19575259, 19575374..19575417,19575533..19575595,19575668..19575722, 19576042..19576595) /locus_tag="TCM_028944" /product="Uncharacterized protein" /note="quality class is strong, express is none, homology is ortholog strong, intron is none, protein is complete" CDS join(19575029..19575082,19575165..19575259,19575374) /locus_tag="TCM_028944" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26991.1" /translation="MKMLSQSSSQSYKEFHAKVKLLMRVHHGNLTNLVGYFNESSHIG LIMSS" mobile_element 19578185..19578823 /note="source:CACAO_M_E34519_F2_scaffold_5 1 610" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19578773..19580886) /note="source:INTACT503_F2_scaffold_1-int 2760 4880" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19580892..19582749 /note="source:CACAO_M_E69958_F2_scaffold_9 2905 4767" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19582750..19602204 /note="source:INTACT257_F186_scaffold_6-int 1 19455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19603903..19603956 /note="source:CACAO_M_E5899_F5_scaffold_2 20742 20787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19603915..19603969) /note="source:CACAO_M_E42514_F40_scaffold_5 124 174" /mobile_element_type="retrotransposon:LTR/Copia" gene 19604096..19607598 /locus_tag="TCM_028946" /note="dbxref CacaoGD:Thecc1EG028946" mRNA join(19604096..19604621,19604873..19605348, 19605433..19605464,19605865..19605941,19606586..19606634, 19606907..19607069,19607244..19607598) /locus_tag="TCM_028946" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.52 coverage" CDS join(19604540..19604621,19604873..19605120) /locus_tag="TCM_028946" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26992.1" /translation="MQLVQLLLTRSAFGALVRQWCALGCTVGSLCTAYTCVGLEPYIS EPSPLRRGDAEPLHSSPYYVHTGTPRLHAGSMVGEGWTCVPCHPAPSRPLPCLACCHP LLTRTPR" mobile_element 19606292..19606338 /note="source:CACAO_M_E70891_F369_scaffold_10 1381 1428" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19609639..19613756 /locus_tag="TCM_028947" /note="dbxref CacaoGD:Thecc1EG028947" mRNA join(19609639..19609785,19609870..19610413, 19610503..19610966,19611061..19611199,19611293..19611364, 19611459..19611530,19611612..19611692,19611889..19612043, 19612171..19612391,19612486..19612612,19612714..19612776, 19612869..19613058,19613156..19613756) /locus_tag="TCM_028947" /product="Leucine-rich repeat protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s19245.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037727t1" /inference="similar to AA sequence:ricco:30146.m003452" /note="quality class is medium, express is weak, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.31 coverage" CDS join(19609707..19609785,19609870..19610413, 19610503..19610966,19611061..19611199,19611293..19611364, 19611459..19611530,19611612..19611692,19611889..19612043, 19612171..19612391,19612486..19612612,19612714..19612776, 19612869..19613058,19613156..19613570) /locus_tag="TCM_028947" /note="dbxref ricco:30146.m003452; paralog of Thecc1EG037727t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative" /protein_id="EOY26993.1" /db_xref="TAIR:AT1G51800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FUU9" /translation="MGKRRYFLLFSSFALAFLIIHAQDQSGFVSLDCGLPEGSSYNES TTGISYTSDAPYIQTGISNRLPEFNSGMQQQVLEYLRSFPQGDRNCYMINLTKGEKYL IRTGFMYGNYDAKNEAPEFDLYLGPNLWATMVFQNASTAIFKEIIQVLQSNYLHVCLV NTGKGIPFISALELRLLKNTTYNTQSATEALEFFLRDDFGSTSNATFRFPQDVYDRIW QPYQRNDLGQISTSSLISSNSDYQPPLLAMRTASIPANASQPLNFSVQDSDSSAQFYL YVHVAEIEELQANQSREFIIYVNDKLWFQAYSPTYLRADTIQSLSAVKGGQFSMVRTR GSTLPPIINALEAYRVKELIQSQTVEKDVNAIVNIKSMYGLKRNWQGDPCAPQKYSWE GLNCSYEDSNPPRIISLNLSSSSLSGEIPPYIVNLTQLLYLDLSNNNLTGPVPEFLTQ LQSLSLLNLEGNALNGSVPTGLIDRSNRGLLQLNVEGNQIPCTWESCSKKKNSAVVPV VASVASVLSFLIIASALLWWFKRTKPSGKLDLGSRKPYQQKELKNRQFTFSDVQKITN NFERVIGKGGFGTVFLGCLGDTQVAVKMLSKSSIQGYKQFEAEVELLLRVHHRNLTSL IGYCDDGTNLGLIYEYMAKGNLAEYLSDSSSSLLNWEGRLGIALEAAQGLEYLHHGCK PPIIHRDVKSTNILLTENLQAKLSDFGLSKTFPIEGGSHVSTVVAGTPGYLDPEYSTS NRLTEKSDVYSFGVVLLEIITNRPVITRTIDEPTHISHWVGSMLSNGDIENIVDSRLQ GNFEINSVWKAIEVAMACLSPASTKRPTMNYVVTELSDCLLAEIKRTRGVNEDESQES IGMISMNLGSEITPLAR" gene complement(19613778..19628081) /locus_tag="TCM_028948" /note="dbxref CacaoGD:Thecc1EG028948" mRNA complement(join(19613778..19614036,19622389..19623178, 19628012..19628081)) /locus_tag="TCM_028948" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" mobile_element complement(19617831..19618913) /note="source:scaffold_9_CACTA_0931 3060 4142" /mobile_element_type="transposon:TIR/CACTA" CDS complement(19622782..19623081) /locus_tag="TCM_028948" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26994.1" /translation="MDRFNEIEDDVCWEAKNVDKEYGNHGFATRVLIAKDKESPAQVI RFVEVIGQPRKKVVKRTKSWSVTGKPSPKIQIIQTSNWVVSQAQLAEKPKIIQTY" mobile_element 19626479..19627342 /note="source:INTACT642F_F365_scaffold_5-int 1 868" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19634039..19634962 /locus_tag="TCM_028951" /note="dbxref CacaoGD:Thecc1EG028951" mRNA join(19634039..19634162,19634286..19634386, 19634496..19634962) /locus_tag="TCM_028951" /product="Leucine-rich repeat protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016909001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028947t1" /inference="similar to AA sequence:ricco:30146.m003452" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(19634142..19634162,19634286..19634386, 19634496..19634910) /locus_tag="TCM_028951" /note="dbxref ricco:30146.m003452; paralog of Thecc1EG028947t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative" /protein_id="EOY26995.1" /db_xref="TAIR:AT1G51830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AX66" /translation="MTLSFETAKLSDFGLSKTFPIEGGTHVSASIAGTPSYLDPEYYI SNRLTEKSDVYCFGFVLLEIITSRPVLARTNNERTHISQRFSSMLSMGDIKKIVDPRL RADFDDNSVWKAVEVAMACLSPTCARRPTMNQVVMELSECLSAEGARNRRANENESLD SVGLMTLNLGTESTPLAR" gene 19637911..19638817 /locus_tag="TCM_028952" /note="dbxref CacaoGD:Thecc1EG028952" mRNA 19637911..19638817 /locus_tag="TCM_028952" /product="Leucine-rich repeat protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G51840.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028947t1" /inference="similar to AA sequence:frave:gene22902" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 19637950..19638717 /locus_tag="TCM_028952" /note="dbxref frave:gene22902; paralog of Thecc1EG028947t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative" /protein_id="EOY26996.1" /db_xref="TAIR:AT1G51790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IB60" /translation="MEMLKHVLLAFIICSIAFDILVPAQLDQSGSVNLSFNENFNTLS LTREGQRPLFVAFSGFISLDSGLPEDSSYTEATTGIDYVSDAAYGVTGVGKSVLPEFQ TGMQRQIWHVRSFPEGDRNCYNLTLTKGDQYLIKASFMYGNYDELNEVPQFDLHLGPN LWGTVTLQNASTAKTIDIIHVLQENHLHVCLVNTGNGIPSISALELRLLKNTIYRTQS KSLELFTRYDVGSTTGSTFRQVTLTFNLLKLFHNKEL" gene 19639834..19648569 /locus_tag="TCM_028953" /note="dbxref CacaoGD:Thecc1EG028953" mRNA join(19639834..19640053,19641369..19641509, 19641584..19641710,19642274..19642476,19643392..19643849, 19648293..19648569) /locus_tag="TCM_028953" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016909001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027190t1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(19641372..19641509,19641584..19641710, 19642274..19642476,19643392..19643823) /locus_tag="TCM_028953" /note="paralog of Thecc1EG027190t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26997.1" /translation="MTNSFERILGKEGFGIVFHGYLDDTQVTIKMLSHSSVQGYRQFQ AEVELLLRVHHRNLTSLIMYCKEGINMRLIYEYMAKGNLAEHLSSRLVILEINNERTH ISQWVGSMLSRGDIKNIVDPRLQGDFDVNSIWKAVEVAMTSVSPSSTKRPTMTQEAVE IGFEPVLRHANLTNAQMKQQEEDIAKRYKVLSCLQSAVSGEILARIMHLENPKEVWDH LKDEFQGSERTKQIQALNLTRQFEMLSMDEDEFIRIFPGRLMGIVHQLRLLGKAMPED KLVSKMLVSLPEKYESKCHAPDS" mobile_element 19642758..19643036 /note="source:CACAO_M_E34142_F67_scaffold_4 7169 7421" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19643028..19643179) /note="source:INTACT286_F67_scaffold_10-int 1 159" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19643803..19646412 /note="source:CACAO_on_SS_E42_scaffold_2 19410 22009" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(19646413..19646540) /note="source:INTACT897F_F376_scaffold_6-int 6793 6923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19646521..19650054) /note="source:INTACT286_F67_scaffold_10-int 364 3895" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19650124..19650438 /note="source:scaffold_9_CACTA_0943 1660 1989" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19650490..19650783 /note="source:scaffold_9_CACTA_0943 3900 4187" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19650953..19651134 /note="source:scaffold_9_CACTA_0943 4241 4422" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19651375..19651655) /note="source:INTACT286_F67_scaffold_10-int 56 337" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19651808..19652098) /note="source:INTACT286_F67_scaffold_10-int 34 337" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19652250..19652531 /note="source:CACAO_M_E34142_F67_scaffold_4 7307 7593" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19652681..19652971) /note="source:INTACT286_F67_scaffold_10-int 34 337" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19653121..19653648 /note="source:CACAO_M_E34142_F67_scaffold_4 136 684" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19653692..19653734) /note="source:scaffold_9_CACTA_0943 3900 3942" /mobile_element_type="transposon:TIR/CACTA" gene complement(19654695..19656352) /locus_tag="TCM_028954" /note="dbxref CacaoGD:Thecc1EG028954" mRNA complement(join(19654695..19655495,19655704..19656164, 19656257..19656352)) /locus_tag="TCM_028954" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400029787.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021964t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage" CDS complement(join(19655418..19655495,19655704..19656164, 19656257..19656266)) /locus_tag="TCM_028954" /note="paralog of Thecc1EG021964t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY26998.1" /translation="MNLKDLVISFNTWNVGPVGKSEFKIWCMAFYAILWSVWLYRNDM VFRGVTWNADQVFELVKLRVASWAQAKWPLEYGVVLDTYKYPAKGAMVKKRKITRVVE EWSKPHKGEMKYNVDGVAQGCPEEVGIGGIIRDDEGNTKIVFSKVIGVEDASAAEETN QLADNLAKGGVQRQVDLLNVYD" gene 19657156..19661895 /locus_tag="TCM_028955" /note="dbxref CacaoGD:Thecc1EG028955" mRNA join(19657156..19657501,19657588..19658125, 19658217..19658692,19658777..19658915,19659159..19659230, 19659309..19659389,19660071..19660134,19660215..19660341, 19660475..19660537,19660633..19660822,19660901..19661895) /locus_tag="TCM_028955" /product="Leucine-rich repeat protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G51860.1" /inference="similar to AA sequence:ricco:30146.m003451" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(19657405..19657501,19657588..19658125, 19658217..19658692,19658777..19658915,19659159..19659230, 19659309..19659389,19660071..19660134,19660215..19660341, 19660475..19660537,19660633..19660822,19660901..19661192) /locus_tag="TCM_028955" /note="dbxref ricco:30146.m003451" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative" /protein_id="EOY26999.1" /db_xref="TAIR:AT1G51800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AX66" /translation="MEMFKCFSLALFGGLAVVIQLQVLQVHGQDQSGFISLDCGLPRD SNYTETTTGLNYSSDASFIDTGLSRSILPEFRTNVQQQMWYVRSFPGGPRNCYNFRLQ TGNKYLIRASFMYGNYDSQDKALAFDLHLGPNLWFSVRLENASTFINTEIIHVLSSNN LYVCLVNTGNGTPFISALELRHLMNSIYKTQTGSLDLFARLDIGSKDNETIRYKDDVY DRLWRPQSFTGWNQLRTSHTIDSDGHNDFQPPSAVMRTAATPKNASMPIDILLDADNS TAKFYVYMHFAEVKKLQDNEYRQFNISLNGQLWFGPFTPDYLSTTTIYTPSGLTGRQY QFSIYKADNSSLPPILNALEVYTVKELLQSQTDPMDVEAITNIKSMYRLSRNWQGDPC APQDYLWDGLNCSYTGSGPPRIISLDLSDNSLMGPTPEFLSEMTSLRVLSLRGNMLNG SVPVELVERSKNGSLLLSQVAVKMFSSISVQSYKKFQAKVEPLLGIHHRNLTSLVGYC DEDTNKGLIYEYMSNGNFEHHLSESNTNILSWEQRLKIAMGAAQGLEQLHNGSKPPII HRDVNPTNILLNEDLQAKLADFGLSRTFPVDDDTPVSTLIAGTPGYQDPEYIISNNLT EKSDVYSFGVVLLETITSRLFVMKSHETVHISDWVNSMLSNGDAKNIVDTRLQGDFDM NSLSKAIELALACVSPQSLARPAVNHAVME" gene 19662655..19665578 /locus_tag="TCM_028956" /note="dbxref CacaoGD:Thecc1EG028956" mRNA join(19662655..19662824,19663911..19664239, 19664311..19664491,19664722..19664785,19664895..19665028, 19665267..19665578) /locus_tag="TCM_028956" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" mobile_element complement(19662910..19663427) /note="source:CACAO_M_E57277_F309_scaffold_8 45 571" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(19664110..19664239,19664311..19664491, 19664722..19664785,19664895..19665028,19665267..19665414) /locus_tag="TCM_028956" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27000.1" /translation="MVAIKAYIVLCERIDEIETVQWKLSEMINTLSDETKDALSTLQG DRGKKAKMLKPKRYEWVRDAKELENFLFDIEQYFRALQTELNEDKVAMAAMYLERDAK IWSEALDEDGVTVTKVQDVTSAMLANPQVREVNRDCLLRTHHNPEQLSHGALNLKLQY LVFTAMNLIGAFDNFITPRKAKRYGLKVEKNFRQMEAINSPTLAIMGNSKDVKVKIGS " mobile_element complement(19669128..19669995) /note="source:CACAO_M_E71478_F17_scaffold_10 638 1517" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19669991..19674081) /note="source:CACAO_M_S_E5670_F9_scaffold_2 7277 11459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19674093..19674188) /note="source:scaffold_5_CACTA_0585 1822 1917" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19674106..19674580) /note="source:CACAO_M_E11399_F9_scaffold_2 728 1202" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19674570..19675997) /note="source:CACAO_M_E23633_F9_scaffold_4 1 1429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19679099..19679187 /note="source:scaffold_3_CACTA_0396 893 981" /mobile_element_type="transposon:TIR/CACTA" gene 19682788..19683842 /locus_tag="TCM_028959" /note="dbxref CacaoGD:Thecc1EG028959" mRNA join(19682788..19683079,19683180..19683312, 19683394..19683465,19683547..19683618,19683739..19683842) /locus_tag="TCM_028959" /product="Leucine-rich repeat transmembrane protein kinase protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g21250.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028955t1" /inference="similar to AA sequence:ricco:30146.m003451" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4443t1" mRNA join(<19682791..19683079,19683180..19683312, 19683394..19683465,19683547..19683618,19683713..>19683791) /locus_tag="TCM_028959" /product="Leaf senescence-associated receptor-like protein kinase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g21250.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028955t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016910001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is weak, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4443t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4443t1" CDS join(<19682791..19683079,19683180..19683312, 19683394..19683465,19683547..19683618,19683713..>19683791) /locus_tag="TCM_028959" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG028955t1" /codon_start=1 /product="Leaf senescence-associated receptor-like protein kinase, putative isoform 2" /protein_id="EOY27002.1" /db_xref="Phytozome:GSVIVT01016910001" /db_xref="TAIR:AT1G05700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FUU9" /translation="QTNKFYVYMYFAEVEKLQANQFRQFNISLNGQHWSGPHSPAYLE ASTVYKTSPLTGQLEYEFLIHKARNSSLPPIINAIEVYKVNELPQLQTNQDDVDAVKN IQSTYKIKRNWQGDPCAPEAYLWNGLNCSYNDSPRIISMNLSSSGLTGNIAPYISNLS MLQFLDLSNNSLVGEVPGFLSKLPLLRVLNLKKNKLIGSVPVELILRSKDGSLIL" CDS join(19682815..19683079,19683180..19683312, 19683394..19683465,19683547..19683618,19683739..19683754) /locus_tag="TCM_028959" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30146.m003451; paralog of Thecc1EG028955t1" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase protein, putative isoform 1" /protein_id="EOY27001.1" /db_xref="TAIR:AT1G05700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AE95" /translation="MYFAEVEKLQANQFRQFNISLNGQHWSGPHSPAYLEASTVYKTS PLTGQLEYEFLIHKARNSSLPPIINAIEVYKVNELPQLQTNQDDVDAVKNIQSTYKIK RNWQGDPCAPEAYLWNGLNCSYNDSPRIISMNLSSSGLTGNIAPYISNLSMLQFLDLS NNSLVGEVPGFLSKLPLLRVLFSSS" gene 19684087..19685908 /locus_tag="TCM_028960" /note="dbxref CacaoGD:Thecc1EG028960" mRNA join(19684087..19684192,19684282..19684502, 19684582..19684699,19684791..19684853,19684926..19685112, 19685221..19685908) /locus_tag="TCM_028960" /product="Leucine-rich repeat protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g21250.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028947t1" /inference="similar to AA sequence:ricco:30146.m003444" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1501t1" CDS join(19684359..19684502,19684582..19684699, 19684791..19684853,19684926..19685112,19685221..19685641) /locus_tag="TCM_028960" /note="dbxref ricco:30146.m003444; paralog of Thecc1EG028947t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative" /protein_id="EOY27003.1" /db_xref="TAIR:AT1G51890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AX66" /translation="MRITNNLDRILGKGKHGTVYHGYLDGTPVAVKMLSSSSVQSYKH FQAEVKLLLGVHHRNLINLVGYCNEGGLIYEYMANGSLEELLLDSCKHFLNWEGRLRV ALDAAQGLEYLHKYCKPTMVHGNVKPSNILINDEFQVKLADFGLSGTFPNDEGTFLTS AAGTSGYPGHEYSDSKRLSEKTDVYSFGIVLLEMFTGQSAISRTSEKAHKDLVERLSS MLAKGDIEKIVDPRLKGNFGTQSVRKALEIAMACISAAGTGRLTMDVVAMELNQCLAV EIAQNKKDHESKAKGSIEMITVNLDDDESILLGR" gene complement(19686075..19689825) /locus_tag="TCM_028961" /note="dbxref CacaoGD:Thecc1EG028961" mRNA complement(join(19686075..19686771,19686860..19686941, 19687892..19689326,19689643..19689825)) /locus_tag="TCM_028961" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30146.m003443" /inference="similar to AA sequence:ricco:30146.m003443" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2433t1" CDS complement(join(19686723..19686771,19686860..19686941, 19687892..19689311)) /locus_tag="TCM_028961" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30146.m003443" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /protein_id="EOY27004.1" /db_xref="TAIR:AT3G21330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HY46" /translation="MDGLGWDDSEVVANSLPVWNSQRNDIEDSFLMSNSNSSMYCGKM NLPEDIFNPIQELQKAEPSRVNSDSDIVREMVQQQVSELDSVNVASNFNMLQRQGVRL AADTSLLKSANWGDALSQELCSSAWMKRAYGLSTSNASISDIGMAVQSQVMKGLQNGK AGATTTGSLEAFNCLLSATNSNTDTSVEDDGISMIFSDCKNLWNFAASSAVSSGESEN NGSNTGSKDFNCPVNELDETLSQSSSDRYFKNGKLSQTRPSSSKRGSDQSEFKVSLNC GYFNLLQTDSSATEGGFRLIPENPPKAKKARTEKRPSSSNINFQQPSSSVSSSIEEPD PEAIAQMKEMIYRAAAFRPVSLGLEVVEKPKRKNVRISTDPQTVAARQRRERISERIR VLQRLVPGGSKMDTASMLDEAANYLKFLRSQVKALENLGHKLDPVNCPPTNHAFSSLP FNHSLPMQTHFPLLNPNHIQHPQNNLLRKEPRSLAGNFVFGLSFKLTTVQSRCIGVDS YAALRADL" mRNA complement(join(19687449..19689326,19689498..19689539)) /locus_tag="TCM_028961" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30146.m003443" /inference="similar to AA sequence:ricco:30146.m003443" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2433t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2433t1" CDS complement(19687887..19689311) /locus_tag="TCM_028961" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30146.m003443" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2" /protein_id="EOY27005.1" /db_xref="TAIR:AT3G21330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HY46" /translation="MDGLGWDDSEVVANSLPVWNSQRNDIEDSFLMSNSNSSMYCGKM NLPEDIFNPIQELQKAEPSRVNSDSDIVREMVQQQVSELDSVNVASNFNMLQRQGVRL AADTSLLKSANWGDALSQELCSSAWMKRAYGLSTSNASISDIGMAVQSQVMKGLQNGK AGATTTGSLEAFNCLLSATNSNTDTSVEDDGISMIFSDCKNLWNFAASSAVSSGESEN NGSNTGSKDFNCPVNELDETLSQSSSDRYFKNGKLSQTRPSSSKRGSDQSEFKVSLNC GYFNLLQTDSSATEGGFRLIPENPPKAKKARTEKRPSSSNINFQQPSSSVSSSIEEPD PEAIAQMKEMIYRAAAFRPVSLGLEVVEKPKRKNVRISTDPQTVAARQRRERISERIR VLQRLVPGGSKMDTASMLDEAANYLKFLRSQVKALENLGHKLDPVNCPPTNHAFSSLP FNHSLPMQTHFPLLNPNHIQHPQS" mobile_element 19697259..19698036 /note="source:INTACT687_F13_scaffold_3-int 1293 2053" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19698414..19699988) /locus_tag="TCM_028962" /note="dbxref CacaoGD:Thecc1EG028962" mRNA complement(join(19698414..19699631,19699747..19699988)) /locus_tag="TCM_028962" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028954t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS complement(join(19699029..19699631,19699747..19699797)) /locus_tag="TCM_028962" /note="paralog of Thecc1EG028954t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27006.1" /translation="MGSGTNKEGSQMGRTIMVLQRDRVEDRTWRNIWKNLMPYRIEIF CWQVLHERVAVKQELAKKNLIDQEAAVCGLFKNESELVRHLFFHCLEVWHVWMRWCSE WGVTWVVLEDLVISFNTWNAGPVRKGEFKIWCMAFYAILWSVWLYRNDMVFRRATWNA DQVFELVKLKVATWAQAKWPFEYGVVLDTFRYPAEGTMVKKRKITRIVEEWSKPHKG" mobile_element complement(19701698..19702051) /note="source:CACAO_M_S_E14850_F17_scaffold_2 4287 4639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19702054..19702874 /note="source:CACAO_M_E52278_F17_scaffold_7 3340 4156" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19706363..19716550 /locus_tag="TCM_028963" /note="dbxref CacaoGD:Thecc1EG028963" mRNA join(19706363..19706529,19711356..19712062, 19712508..19713535,19714910..19714961,19715140..19716550) /locus_tag="TCM_028963" /product="Hydroxyproline-rich glycoprotein family protein, putative" /inference="alignment:exonerate- protein:2:ricco:30146.m003441" /inference="similar to AA sequence:ricco:30146.m003441" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4461t3" mobile_element complement(19709624..19710191) /note="source:CACAO_on_E169_scaffold_5 1 596" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS join(19711835..19712062,19712508..19713535, 19714910..19714961,19715140..19716156) /locus_tag="TCM_028963" /note="dbxref ricco:30146.m003441" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein, putative" /protein_id="EOY27007.1" /db_xref="TAIR:AT2G25930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVN1" /translation="MMRGGKDEAKVMSPMFPRLHVNDTERGGPRAPPRNKMALYEQLS IPSQRFNSGSLPVLPLPPNSNSSLVPSISSSHGGGNGRSMFMPFGNSPESSILAEKFH SYSIPGIKLNTMKGNQEKKSTKATDYQSLDTTPPIPAISKSNPLQPLHFSNFKKFSLR KLGHDDDLRVPTSVLSGRDRNCSRSKQSGGQENFSKLNLNSSMQLQTANEKQMKENYS VDQKSRRYFGNEAEENGRLSRSSQDLMERSNSVQSTRDKILADTSSDLPTKIKNSESL KRPHAFLNQENKSSSVNMVNSVDGPNALLLQECVATQDKMIFRENILVESGRCRENTS KVRNESCLRQSLGVDNGSPNVLENTSKAHEEKKCGAMEVGVVGGHNNVPDAATVESIS HLDICPDDVVGIIGEKQFWKVRRAIVNQQRVFAVQVFELHRLIKVQRLIAGSPHMLFE DTFFMGKPSLDVSPIKKLPSNYVLEPPLIVKVKDSSQKPNISIECADENAVAKLPLPS ANDDTSKGLVALQPKYGPYLGNALSTPLAANTRTSPWCFSPFGSQWLVPVMSPSEGLV YKPYAGPCPPTAGFMAPVYDSCGPVNLATGGGDFLNTAYGVPASHQQGIGILPGNSAI GQTYFPHYGMPVMNPSVSDSAVEQMSPFIGVQLKGNQLSTGDVNFTIAHQSSCNMSSQ VSQAISYCVGKLPASKESEIQGSTASSPSERARGDALPLFPTEPTIQASDHNARSSGQ QTRVIKVVPHNSRLATESAARIFQSIQEERKQYD" gene complement(19716397..19719396) /locus_tag="TCM_028964" /note="dbxref CacaoGD:Thecc1EG028964" mRNA complement(join(19716397..19717255,19717389..19717535, 19717674..19717718,19717802..19717960,19718080..19718286, 19718629..19718715,19718814..19718923,19719195..19719396)) /locus_tag="TCM_028964" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30146.m003440" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001624t2" /inference="similar to AA sequence:Phytozome:GSVIVT01011532001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4467t1" CDS complement(join(19716881..19717255,19717389..19717535, 19717674..19717718,19717802..19717960,19718080..19718286, 19718629..19718715,19718814..19718923,19719195..19719294)) /locus_tag="TCM_028964" /note="paralog of Thecc1EG001624t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27008.1" /db_xref="Phytozome:GSVIVT01011532001" /db_xref="TAIR:AT2G44220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RQ78" /translation="MKNLPFSSLIGYKCILLKLEKNPSIPYSASFLLALYHMFSHVHV QVDGRSISSVRNMELAKHEGAIKTIQSEDGDVIDCVDIYKQPAFNHPLLKNHTIQMKP SSYPRGMETEQFESELLQGWHKNGQCPEGTIPIVRAQIHNSTRTMAFVPRRKNLDQVA SEAVRNHEYAQVSAVNGNYFGASAMLNVWNPATFDNEFSLAQIWLLSGPQDELNSMEA GWIVSQVDKRTKLFIYWTSDDYQSTGCYNLDCPGFVQTDKKFGLGGNLEPVSTYGGKQ YEMSITIHKDKQSGNWWLRIQNVDLGYWPGSIFTGLSDRADFITWGGEIVNSELEGRH TSTQMGSGHFPSEDFGKASFFRNLGYIDDSGAVRDPENLVPYASNPSCYDLHIPTKND FGTHFYFGGPGYSDKCQ" gene complement(19719820..19726006) /locus_tag="TCM_028965" /note="dbxref CacaoGD:Thecc1EG028965" mRNA complement(join(19719820..19720533,19720616..19720746, 19721130..19721296,19721385..19721500,19721638..19721793, 19722076..19722184,19722983..19723092,19723305..19723466, 19724103..19724345,19725006..19725456,19725908..19726006)) /locus_tag="TCM_028965" /product="RNA methyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s19990.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016904001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4455t1" mRNA complement(join(19719820..19720533,19720616..19720746, 19721130..19721500,19721638..19721793,19722076..19722184, 19722983..19723092,19723305..19723466,19724103..19724345, 19725006..19725456,19725908..19726006)) /locus_tag="TCM_028965" /product="RNA methyltransferase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s19990.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016904001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:PASA:2:TSA:puevd3b028008t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4455t1" mRNA complement(join(19720314..19720534,19720616..19720749, 19721130..19721296,19721385..19721500,19721638..19721793, 19722076..19722184,19722983..19723092,19723305..19723466, 19724103..19724345,19725006..19725353)) /locus_tag="TCM_028965" /product="RNA methyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s19990.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016904001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4455t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4455t1" CDS complement(join(19720426..19720533,19720616..19720746, 19721130..19721296,19721385..19721500,19721638..19721793, 19722076..19722184,19722983..19723092,19723305..19723466, 19724103..19724345,19725006..19725335)) /locus_tag="TCM_028965" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNA methyltransferase family protein isoform 1" /protein_id="EOY27009.1" /db_xref="Phytozome:GSVIVT01016904001" /db_xref="TAIR:AT3G21300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU28" /translation="MATIPSHALRHLTVTRPWLRKIRCTASLAFCSPDNYINGNADTK TTNNSNSQAFFPKKNQVLELECESLAFKGKGVCKVADSGFVLLCDRALPGERFIGRVT RKKGSYAEVTKLKTISPHWDLVDAPCEYASYCGGCKTQNLSYEAQVRAKEQQVRELLI NVGKFSDKSPDFSSIMKPIVPCDIQFHYRNKMEFSFGSQKWLPKELLDQKLDDNENYA LGLHAPGFFDKILNVDKCLLQSEPANKILATVQDHWKDPELGLSPYNVHTHAGFLKHL VLRTGRDMKTGLPELMVNFVTSSYKPGLLKLLVEKISAIPEVASIVNNVNTSVGNTSV GEEEYTLYGKSTITESLRGLTFQISANSFFQTNTRQAEVLYKLIEDCAGLRGDGSEVV LDLFCGTGTIGLTLAKTARHVYGYEVVAQAVADAHRNALLNGISNATFVQGDLNKIGE NFGKDFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV REQNIKGCYQLKSIEPVDMFPHTPHIECVCQLELS" CDS complement(join(19720454..19720534,19720616..19720749, 19721130..19721296,19721385..19721500,19721638..19721793, 19722076..19722184,19722983..19723092,19723305..19723466, 19724103..19724345,19725006..19725335)) /locus_tag="TCM_028965" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNA methyltransferase family protein isoform 2" /protein_id="EOY27010.1" /db_xref="Phytozome:GSVIVT01016904001" /db_xref="TAIR:AT3G21300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU28" /translation="MATIPSHALRHLTVTRPWLRKIRCTASLAFCSPDNYINGNADTK TTNNSNSQAFFPKKNQVLELECESLAFKGKGVCKVADSGFVLLCDRALPGERFIGRVT RKKGSYAEVTKLKTISPHWDLVDAPCEYASYCGGCKTQNLSYEAQVRAKEQQVRELLI NVGKFSDKSPDFSSIMKPIVPCDIQFHYRNKMEFSFGSQKWLPKELLDQKLDDNENYA LGLHAPGFFDKILNVDKCLLQSEPANKILATVQDHWKDPELGLSPYNVHTHAGFLKHL VLRTGRDMKTGLPELMVNFVTSSYKPGLLKLLVEKISAIPEVASIVNNVNTSVGNTSV GEEEYTLYGKSTITESLRGLTFQISANSFFQTNTRQAEVLYKLIEDCAGLRGDGSEVV LDLFCGTGTIGLTLAKTARHVYGYEVVAQAVADAHRNALLNGISNATFVQGDLNKIGE NFGKDFPKPDIVISADPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG VERAKHQRMLPVKKHRASGHVPSYSPY" CDS complement(join(19721357..19721500,19721638..19721793, 19722076..19722184,19722983..19723092,19723305..19723466, 19724103..19724345,19725006..19725335)) /locus_tag="TCM_028965" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RNA methyltransferase family protein isoform 3" /protein_id="EOY27011.1" /db_xref="Phytozome:GSVIVT01016904001" /db_xref="TAIR:AT3G21300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU28" /translation="MATIPSHALRHLTVTRPWLRKIRCTASLAFCSPDNYINGNADTK TTNNSNSQAFFPKKNQVLELECESLAFKGKGVCKVADSGFVLLCDRALPGERFIGRVT RKKGSYAEVTKLKTISPHWDLVDAPCEYASYCGGCKTQNLSYEAQVRAKEQQVRELLI NVGKFSDKSPDFSSIMKPIVPCDIQFHYRNKMEFSFGSQKWLPKELLDQKLDDNENYA LGLHAPGFFDKILNVDKCLLQSEPANKILATVQDHWKDPELGLSPYNVHTHAGFLKHL VLRTGRDMKTGLPELMVNFVTSSYKPGLLKLLVEKISAIPEVASIVNNVNTSVGNTSV GEEEYTLYGKSTITESLRGLTFQISANSFFQTNTRQAEVLYKLIEDCAGLRGDGSEVV LDLFCGTGTIGLTLAKTYLPWVLLI" mobile_element complement(19725777..19725855) /note="source:CACAO_M_E69306_F123_scaffold_9 4949 5024" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19725799..19725862) /note="source:scaffold_5_CACTA_0596 6998 7061" /mobile_element_type="transposon:TIR/CACTA" gene 19729371..19730539 /locus_tag="TCM_028966" /note="dbxref CacaoGD:Thecc1EG028966" mRNA join(19729371..19729430,19729527..19729664, 19730424..19730539) /locus_tag="TCM_028966" /product="Ribosomal protein S30 family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016902001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037721t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016902001" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16279t1" CDS join(19729427..19729430,19729527..19729664, 19730424..19730470) /locus_tag="TCM_028966" /note="paralog of Thecc1EG037721t1" /codon_start=1 /product="Ribosomal protein S30 family protein" /protein_id="EOY27012.1" /db_xref="Phytozome:GSVIVT01016902001" /db_xref="TAIR:AT5G56670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9FRR9" /translation="MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRF VTAVVGFGKKRGPNSSEK" gene 19732217..19736233 /locus_tag="TCM_028967" /note="dbxref CacaoGD:Thecc1EG028967" mRNA join(19732217..19733035,19735098..19736233) /locus_tag="TCM_028967" /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein" /inference="alignment:exonerate- protein:2:ricco:30146.m003437" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037252t1" /inference="similar to AA sequence:ricco:30146.m003437" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4505t1" CDS join(19732514..19733035,19735098..19735736) /locus_tag="TCM_028967" /note="dbxref ricco:30146.m003437; paralog of Thecc1EG037252t1" /codon_start=1 /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein" /protein_id="EOY27013.1" /db_xref="TAIR:AT5G11730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XGZ7" /translation="MMQSRVVAVEEGKDPASAIRTNLSRALPLRLLLFCLSFLALGIG LSIMSMYSVRFFVVQHIASVAPSTSQPLFQEANSIESWIRPPSNLLHTMNDTELFWRA SFFPQIKEYPFKRVPKIAFMFLTKGPLPLAPLWDRFFKGHEGRFSIYVHALPSYVAGY PPSAAFYRRQIPSQMVEWGKMSMCEAERRLIANALLDISNEWFILLSESCIPLHNFSI IYRYISRSRHSFMGSFDEAGPYGRGRYNPRMEPEVTLSQWRKGSQWFEVNRRLAINII EDTTYYPKFKEFCRPACYVDEHYFPTMLSIQFPHLLANRTLTWTDWSRGGAHPATFGK ADITEGLFNKILEGQLCLYNNQPSSVCYLFARKFAPSALDPLLGLASKVLGY" gene complement(19736322..19741196) /locus_tag="TCM_028968" /note="dbxref CacaoGD:Thecc1EG028968" mRNA complement(join(19736322..19736700,19737727..19741196)) /locus_tag="TCM_028968" /product="Cc-nbs-lrr resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s03840.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027016t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s15110.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4501t1" CDS complement(19737776..19740640) /locus_tag="TCM_028968" /note="paralog of Thecc1EG027016t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative" /protein_id="EOY27014.1" /db_xref="Phytozome:POPTR_0012s15110.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA21" /translation="MADALVSAVLQQLTAVVYQEIEQEVTLVVDVRKEAQKLKSTLQT IQAVLIDAEKRQVKEEAVKLWLDKLKGTSYDMDDLIDEWNAFILTSQIAKKKVCYCVP SPCFSFSKIVLHRDFAVKIKDLNKRLQVIGREKDTFSFDLVRGNEEVERPITTSFIDV SEICGRDQDKHTILNKLLSENSQEQRGPHIISVVGMGGIGKTTLAQLAYNDQRVKAYF DKRIWVCVSDPFDEIRIAKAILEALTEVAPNVIELETLLQKIHHLIERKKFLLVLDDV WTEDCTKWESLKHSLKCGSPGSKILITTRKENVANIMGSTTLFPLGQLSEEECWLLFS QVAFFGRTSEECKCLEGIGRKIANKCKGLPLAAKVLGGLLRFKKSKEQWQSVLDSELW ELEEAEKGIFPPLLLSYYDLSSTLKQCFSYCAIFLKDSVIEKDKLIKLWMAQGFFKGT KNKQVETIGQECFDDLAMRSFFQDFQKNENNSRILKCKMHDIVHDFARFLTKNECSML EVKAVNDPKIESCTEKGRHLVVVLEKGCSFLPYIYNFQKLRSLLIKSYNKNSSIGGAL PRLFDELICLRSLDLSWCLIKEIPKEIGKLIRLRYLKLSNNHHLRELPETLCDLYNLQ TLDLTRCRSLRTLPSGIGKLLNLRHLDNWETFRLRVMPKGLERLTCLRTLKELVVGDG CNDSGTFTIGDLANLSCLQGDLNIRGLGNATDLTEARKAKLRNKNDLIGLTLNFDFST GRIGGEDIILEALQPPPYIERLEIRCFNGPLLFPSWLQSSTLAQLRRITLSNCRNWEY LPPLGKLPSLESLEMLNMKRVKTVGVEFLGVTREEGQASSPTSSLASSSSMIAFPNLT SLRFTNMGEWKDWISCEIASTRGAEVDIAVMPRLHSLDIQRCPMLKTLPDHLLRLTSL KELSIAWCPILSEYCRKEWPSISYIRDIRVDGVYVQRNGH" mobile_element 19746126..19753894 /note="source:CACAO_M_S_E84604_F20_scaffold_6 1 7769" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19752525..19755496) /locus_tag="TCM_028971" /note="dbxref CacaoGD:Thecc1EG028971" mRNA complement(join(19752525..19752893,19754335..19754394, 19754510..19754701,19755163..19755496)) /locus_tag="TCM_028971" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039164t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.61 coverage" CDS complement(join(19752573..19752893,19754335..19754394, 19754510..19754674)) /locus_tag="TCM_028971" /note="paralog of Thecc1EG039164t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27015.1" /translation="MYSGIVYHLMENLLSLDMHGTSNSFPGVMLSTNNIEEVRGPTVH KDFQLLRSDGWDLYVMELLRWPKGIVGEFVLMESSTSNQDALVPSYIQDLMKMIQVSQ ERMQTLEDNNRRMMDIIFQLASSTVTTFQAQLVHLNESAPVVTNTKGNERNGKNAIVW MFGEKFFFSSQEKVNLLDLGG" gene complement(19756272..19761588) /locus_tag="TCM_028972" /note="dbxref CacaoGD:Thecc1EG028972" mRNA complement(join(19756272..19759500,19761000..19761588)) /locus_tag="TCM_028972" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g011600.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028973t7" /inference="similar to AA sequence:Phytozome:POPTR_0012s12350.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage" CDS complement(19756457..19759372) /locus_tag="TCM_028972" /note="paralog of Thecc1EG028973t7" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY27016.1" /db_xref="Phytozome:POPTR_0012s12350.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA21" /translation="MADALVSAVSQQLTAILFQEAEYGVRLFVGIKEEEVKRLSSTLQ TIRAVLVDAEKRQLKEQAVKVWLDKFQNVSYDIEDVLGEWEIAILKMKIARDQSSSTS ILLRKVRSWIHSPIPCITRAIHRYDIAVKIKKLNERLQVIAKEKDDYAFTVDQSRRHD LEPERERPITTSFIDVSDIRGRDRDKNVLVSMLLSKNNHEERGIPVISLVGMGGIGKT TLAQIAYNDHKVKAYFDKRIWVCVSNPFDEMRTAKAILEALTGVVSNFTELNTLLEQI HESIKGERFLLVLDDLWSEDERKWQSLKYSLNYGSQESKILMTTRKENVATIMGCSKL FRLGKLSKEESWSLFSHLAFFGRNDKERESLEDIGKKIAQKCQGLPLAAKTLGGLLRF KRSREQWQRMLSSRIWELEEAENGLFSPLLLSYYDLPSPLRQCFSYCSIFPKDYRIEK DFLIKSWMAQGFLGETQHKDMEIIGEEYFDNLVIHSFFQEFVKDENDDCIISCKMHDI VHDFAQYLRRNKSFLVASNNIEELDIESYQENARHLTLIHDEPVAIPDPIFNVKKLRS LHLNLNDSSAVRASLAKLLDQLTCLRILSFKDMNFGFKTSINAIPKEIGKLMHLRYLN LEGNSELEKLPETVCDLCNLQTLNIKSCKNLIKLPHRIGKLINLRHVQNVGTDRCRFM PKGMQRLTSLRTLEEFVVSRSDVESKSCSLGDLGNFTHLRGELEIRGLGNVAEPREAK KAGLRTKSGLRVLRLKFDSQEMQRINIEDENVVFEALQPPPHLESLGILNCRGPVAFP NWMTSLSMLKRVQLQNCLNWESLPPMGKLQSLESLEIEFLNKVKKVEDEILGVERGEG QSSSSSSNNNNNNIAFPVLKSLKFYYMKEWEDWEYGNLLTSTSEVIMPHLRSLTINYC LKLKALPGHLLHNTTLQELHIRGCPVLGARFEKGRGEDWPSISHIPTIQIDDELVLG" mobile_element 19760339..19760435 /note="source:CACAO_M_E43428_F369_scaffold_5 1228 1318" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19761242..19767768) /locus_tag="TCM_028973" /note="dbxref CacaoGD:Thecc1EG028973" mRNA complement(join(19761242..19761627,19761792..19761921, 19763632..19763721,19763908..19764022,19764678..19767768)) /locus_tag="TCM_028973" /product="Cc-nbs-lrr resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s03940.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028972t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s12350.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4507t4" mRNA complement(join(19761605..19761921,19762150..19762258, 19763632..19763721,19763908..19764022,19764678..19767723)) /locus_tag="TCM_028973" /product="Cc-nbs-lrr resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s03940.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028972t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s12350.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc842t9; alternateUTRof:Thecc1EG028973t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4507t4" mRNA complement(join(19761605..19761921,19762150..19762258, 19763429..19763494,19763632..19763721,19763908..19764022, 19764678..19767723)) /locus_tag="TCM_028973" /product="Cc-nbs-lrr resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s03940.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028972t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s12350.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc842t8; alternateUTRof:Thecc1EG028973t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4507t4" mRNA complement(join(19761605..19761921,19762150..19762258, 19763400..19763494,19763632..19763721,19763908..19764022, 19764678..19767723)) /locus_tag="TCM_028973" /product="Cc-nbs-lrr resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s03940.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028972t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s12350.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc842t6; alternateUTRof:Thecc1EG028973t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4507t4" mRNA complement(join(19761894..19762258,19763632..19763721, 19763908..19764022,19764678..19767727)) /locus_tag="TCM_028973" /product="Cc-nbs-lrr resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s03940.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028972t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s12350.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc893t4; alternateUTRof:Thecc1EG028973t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4507t4" mRNA complement(join(19761894..19762258,19763429..19763494, 19763632..19763721,19763908..19764022,19764678..19767727)) /locus_tag="TCM_028973" /product="Cc-nbs-lrr resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s03940.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028972t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s12350.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc893t2; alternateUTRof:Thecc1EG028973t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4507t4" mRNA complement(join(19762229..19762258,19763400..19763721, 19763908..19764022,19764678..19767727)) /locus_tag="TCM_028973" /product="Cc-nbs-lrr resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s03940.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028972t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s12350.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc893t5; alternateUTRof:Thecc1EG028973t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4507t4" CDS complement(19764702..19767650) /locus_tag="TCM_028973" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG028972t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative isoform 1" /protein_id="EOY27017.1" /db_xref="Phytozome:POPTR_0012s12350.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA21" /translation="MTDAFVSGVLEQLTSIGLHVAENGVRLVVGVNEEVKNLSSTFRT IRAVLVDAEKRQVKEEAVKVWLDKLRNVSYDIEDVLDEWNTAILRSQIPSSTPQSQVR SLIPSSSISIPRLVQRRDIAIKIKELNERLQAIAKEKDDYAFIVNLNRNNDLGPERPK TTYFIDESEICGRDQDRNTIMSMLLGENNHEERGIPIISIVGMGGIGKTTLAQIVYNH HELNAYFQKKIWVCVSDPFDEMRVAKAILETVTGVASSFSELSTVLEKIHESIVGKRF LLVLDDVWTEDERKWQSLKYCLNSGSQGSKILVTTRKENVATIMGCTKLFQLGQLSKE ECWSLFSHIAFFGRNERERESLEDIGKKIADKCQGLPLAAKTLGGLLRFKRSREQWQR ILDSHMWELDEAEKGLFSPLLLSYYDLPSPLRQCFSYCAIFPKDQKIEKDLLIKLWMA QGFLREMEGKKMEIVGEEYFDNLAMRSFFQEFEKDEDDDSIMRCKMHDIVHEFAQLLR KAECFVVASNGIEEQRADCYHENARHLTVILDDEHVAIPNPIYNLKKLRTLRVDSSLY DTSTLNTSLPNLFDQLTCLRMLDLSNNRFRQQCAIEELPRKIGKLMHLRYFNLEGNKG LKQLPETLCNLCNLQTLNIRLCSSLIELPIGFERLVNLRHLQNAGTYGCNSMPPGMQR LTCLQTLEEFVVSSFRGWSIKGRSNISDLGSLAHLRGNLKIIGLGNVRTENEAEDAGL RNKTGLRNLTLSFNSNSKTTRITDEASITDEASVLEALQPPPYLESLNINRMNGPTVF PTWMASLSMLKRVILWACFNWKTLPSMGKLPFLEHLEMWEMKKVKKVGEEFMGVEREE GQTSSSSSSSNNNNIAFPNLKHLKFQFMEEWEEWEFGNPSASIAHDGSSSITIMPCLH SLNIISCLKLKSLPRHLLQKTTLQSLEIFDCPSLRERCLRNGTGEDWPYISHIPTITI NGEDVQRYAH" CDS complement(19764702..19767650) /locus_tag="TCM_028973" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG028972t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative isoform 1" /protein_id="EOY27018.1" /db_xref="Phytozome:POPTR_0012s12350.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA21" /translation="MTDAFVSGVLEQLTSIGLHVAENGVRLVVGVNEEVKNLSSTFRT IRAVLVDAEKRQVKEEAVKVWLDKLRNVSYDIEDVLDEWNTAILRSQIPSSTPQSQVR SLIPSSSISIPRLVQRRDIAIKIKELNERLQAIAKEKDDYAFIVNLNRNNDLGPERPK TTYFIDESEICGRDQDRNTIMSMLLGENNHEERGIPIISIVGMGGIGKTTLAQIVYNH HELNAYFQKKIWVCVSDPFDEMRVAKAILETVTGVASSFSELSTVLEKIHESIVGKRF LLVLDDVWTEDERKWQSLKYCLNSGSQGSKILVTTRKENVATIMGCTKLFQLGQLSKE ECWSLFSHIAFFGRNERERESLEDIGKKIADKCQGLPLAAKTLGGLLRFKRSREQWQR ILDSHMWELDEAEKGLFSPLLLSYYDLPSPLRQCFSYCAIFPKDQKIEKDLLIKLWMA QGFLREMEGKKMEIVGEEYFDNLAMRSFFQEFEKDEDDDSIMRCKMHDIVHEFAQLLR KAECFVVASNGIEEQRADCYHENARHLTVILDDEHVAIPNPIYNLKKLRTLRVDSSLY DTSTLNTSLPNLFDQLTCLRMLDLSNNRFRQQCAIEELPRKIGKLMHLRYFNLEGNKG LKQLPETLCNLCNLQTLNIRLCSSLIELPIGFERLVNLRHLQNAGTYGCNSMPPGMQR LTCLQTLEEFVVSSFRGWSIKGRSNISDLGSLAHLRGNLKIIGLGNVRTENEAEDAGL RNKTGLRNLTLSFNSNSKTTRITDEASITDEASVLEALQPPPYLESLNINRMNGPTVF PTWMASLSMLKRVILWACFNWKTLPSMGKLPFLEHLEMWEMKKVKKVGEEFMGVEREE GQTSSSSSSSNNNNIAFPNLKHLKFQFMEEWEEWEFGNPSASIAHDGSSSITIMPCLH SLNIISCLKLKSLPRHLLQKTTLQSLEIFDCPSLRERCLRNGTGEDWPYISHIPTITI NGEDVQRYAH" CDS complement(19764702..19767650) /locus_tag="TCM_028973" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG028972t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative isoform 1" /protein_id="EOY27019.1" /db_xref="Phytozome:POPTR_0012s12350.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA21" /translation="MTDAFVSGVLEQLTSIGLHVAENGVRLVVGVNEEVKNLSSTFRT IRAVLVDAEKRQVKEEAVKVWLDKLRNVSYDIEDVLDEWNTAILRSQIPSSTPQSQVR SLIPSSSISIPRLVQRRDIAIKIKELNERLQAIAKEKDDYAFIVNLNRNNDLGPERPK TTYFIDESEICGRDQDRNTIMSMLLGENNHEERGIPIISIVGMGGIGKTTLAQIVYNH HELNAYFQKKIWVCVSDPFDEMRVAKAILETVTGVASSFSELSTVLEKIHESIVGKRF LLVLDDVWTEDERKWQSLKYCLNSGSQGSKILVTTRKENVATIMGCTKLFQLGQLSKE ECWSLFSHIAFFGRNERERESLEDIGKKIADKCQGLPLAAKTLGGLLRFKRSREQWQR ILDSHMWELDEAEKGLFSPLLLSYYDLPSPLRQCFSYCAIFPKDQKIEKDLLIKLWMA QGFLREMEGKKMEIVGEEYFDNLAMRSFFQEFEKDEDDDSIMRCKMHDIVHEFAQLLR KAECFVVASNGIEEQRADCYHENARHLTVILDDEHVAIPNPIYNLKKLRTLRVDSSLY DTSTLNTSLPNLFDQLTCLRMLDLSNNRFRQQCAIEELPRKIGKLMHLRYFNLEGNKG LKQLPETLCNLCNLQTLNIRLCSSLIELPIGFERLVNLRHLQNAGTYGCNSMPPGMQR LTCLQTLEEFVVSSFRGWSIKGRSNISDLGSLAHLRGNLKIIGLGNVRTENEAEDAGL RNKTGLRNLTLSFNSNSKTTRITDEASITDEASVLEALQPPPYLESLNINRMNGPTVF PTWMASLSMLKRVILWACFNWKTLPSMGKLPFLEHLEMWEMKKVKKVGEEFMGVEREE GQTSSSSSSSNNNNIAFPNLKHLKFQFMEEWEEWEFGNPSASIAHDGSSSITIMPCLH SLNIISCLKLKSLPRHLLQKTTLQSLEIFDCPSLRERCLRNGTGEDWPYISHIPTITI NGEDVQRYAH" CDS complement(19764702..19767650) /locus_tag="TCM_028973" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG028972t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative isoform 1" /protein_id="EOY27020.1" /db_xref="Phytozome:POPTR_0012s12350.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA21" /translation="MTDAFVSGVLEQLTSIGLHVAENGVRLVVGVNEEVKNLSSTFRT IRAVLVDAEKRQVKEEAVKVWLDKLRNVSYDIEDVLDEWNTAILRSQIPSSTPQSQVR SLIPSSSISIPRLVQRRDIAIKIKELNERLQAIAKEKDDYAFIVNLNRNNDLGPERPK TTYFIDESEICGRDQDRNTIMSMLLGENNHEERGIPIISIVGMGGIGKTTLAQIVYNH HELNAYFQKKIWVCVSDPFDEMRVAKAILETVTGVASSFSELSTVLEKIHESIVGKRF LLVLDDVWTEDERKWQSLKYCLNSGSQGSKILVTTRKENVATIMGCTKLFQLGQLSKE ECWSLFSHIAFFGRNERERESLEDIGKKIADKCQGLPLAAKTLGGLLRFKRSREQWQR ILDSHMWELDEAEKGLFSPLLLSYYDLPSPLRQCFSYCAIFPKDQKIEKDLLIKLWMA QGFLREMEGKKMEIVGEEYFDNLAMRSFFQEFEKDEDDDSIMRCKMHDIVHEFAQLLR KAECFVVASNGIEEQRADCYHENARHLTVILDDEHVAIPNPIYNLKKLRTLRVDSSLY DTSTLNTSLPNLFDQLTCLRMLDLSNNRFRQQCAIEELPRKIGKLMHLRYFNLEGNKG LKQLPETLCNLCNLQTLNIRLCSSLIELPIGFERLVNLRHLQNAGTYGCNSMPPGMQR LTCLQTLEEFVVSSFRGWSIKGRSNISDLGSLAHLRGNLKIIGLGNVRTENEAEDAGL RNKTGLRNLTLSFNSNSKTTRITDEASITDEASVLEALQPPPYLESLNINRMNGPTVF PTWMASLSMLKRVILWACFNWKTLPSMGKLPFLEHLEMWEMKKVKKVGEEFMGVEREE GQTSSSSSSSNNNNIAFPNLKHLKFQFMEEWEEWEFGNPSASIAHDGSSSITIMPCLH SLNIISCLKLKSLPRHLLQKTTLQSLEIFDCPSLRERCLRNGTGEDWPYISHIPTITI NGEDVQRYAH" CDS complement(19764702..19767650) /locus_tag="TCM_028973" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG028972t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative isoform 1" /protein_id="EOY27021.1" /db_xref="Phytozome:POPTR_0012s12350.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA21" /translation="MTDAFVSGVLEQLTSIGLHVAENGVRLVVGVNEEVKNLSSTFRT IRAVLVDAEKRQVKEEAVKVWLDKLRNVSYDIEDVLDEWNTAILRSQIPSSTPQSQVR SLIPSSSISIPRLVQRRDIAIKIKELNERLQAIAKEKDDYAFIVNLNRNNDLGPERPK TTYFIDESEICGRDQDRNTIMSMLLGENNHEERGIPIISIVGMGGIGKTTLAQIVYNH HELNAYFQKKIWVCVSDPFDEMRVAKAILETVTGVASSFSELSTVLEKIHESIVGKRF LLVLDDVWTEDERKWQSLKYCLNSGSQGSKILVTTRKENVATIMGCTKLFQLGQLSKE ECWSLFSHIAFFGRNERERESLEDIGKKIADKCQGLPLAAKTLGGLLRFKRSREQWQR ILDSHMWELDEAEKGLFSPLLLSYYDLPSPLRQCFSYCAIFPKDQKIEKDLLIKLWMA QGFLREMEGKKMEIVGEEYFDNLAMRSFFQEFEKDEDDDSIMRCKMHDIVHEFAQLLR KAECFVVASNGIEEQRADCYHENARHLTVILDDEHVAIPNPIYNLKKLRTLRVDSSLY DTSTLNTSLPNLFDQLTCLRMLDLSNNRFRQQCAIEELPRKIGKLMHLRYFNLEGNKG LKQLPETLCNLCNLQTLNIRLCSSLIELPIGFERLVNLRHLQNAGTYGCNSMPPGMQR LTCLQTLEEFVVSSFRGWSIKGRSNISDLGSLAHLRGNLKIIGLGNVRTENEAEDAGL RNKTGLRNLTLSFNSNSKTTRITDEASITDEASVLEALQPPPYLESLNINRMNGPTVF PTWMASLSMLKRVILWACFNWKTLPSMGKLPFLEHLEMWEMKKVKKVGEEFMGVEREE GQTSSSSSSSNNNNIAFPNLKHLKFQFMEEWEEWEFGNPSASIAHDGSSSITIMPCLH SLNIISCLKLKSLPRHLLQKTTLQSLEIFDCPSLRERCLRNGTGEDWPYISHIPTITI NGEDVQRYAH" CDS complement(19764702..19767650) /locus_tag="TCM_028973" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG028972t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative isoform 1" /protein_id="EOY27022.1" /db_xref="Phytozome:POPTR_0012s12350.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA21" /translation="MTDAFVSGVLEQLTSIGLHVAENGVRLVVGVNEEVKNLSSTFRT IRAVLVDAEKRQVKEEAVKVWLDKLRNVSYDIEDVLDEWNTAILRSQIPSSTPQSQVR SLIPSSSISIPRLVQRRDIAIKIKELNERLQAIAKEKDDYAFIVNLNRNNDLGPERPK TTYFIDESEICGRDQDRNTIMSMLLGENNHEERGIPIISIVGMGGIGKTTLAQIVYNH HELNAYFQKKIWVCVSDPFDEMRVAKAILETVTGVASSFSELSTVLEKIHESIVGKRF LLVLDDVWTEDERKWQSLKYCLNSGSQGSKILVTTRKENVATIMGCTKLFQLGQLSKE ECWSLFSHIAFFGRNERERESLEDIGKKIADKCQGLPLAAKTLGGLLRFKRSREQWQR ILDSHMWELDEAEKGLFSPLLLSYYDLPSPLRQCFSYCAIFPKDQKIEKDLLIKLWMA QGFLREMEGKKMEIVGEEYFDNLAMRSFFQEFEKDEDDDSIMRCKMHDIVHEFAQLLR KAECFVVASNGIEEQRADCYHENARHLTVILDDEHVAIPNPIYNLKKLRTLRVDSSLY DTSTLNTSLPNLFDQLTCLRMLDLSNNRFRQQCAIEELPRKIGKLMHLRYFNLEGNKG LKQLPETLCNLCNLQTLNIRLCSSLIELPIGFERLVNLRHLQNAGTYGCNSMPPGMQR LTCLQTLEEFVVSSFRGWSIKGRSNISDLGSLAHLRGNLKIIGLGNVRTENEAEDAGL RNKTGLRNLTLSFNSNSKTTRITDEASITDEASVLEALQPPPYLESLNINRMNGPTVF PTWMASLSMLKRVILWACFNWKTLPSMGKLPFLEHLEMWEMKKVKKVGEEFMGVEREE GQTSSSSSSSNNNNIAFPNLKHLKFQFMEEWEEWEFGNPSASIAHDGSSSITIMPCLH SLNIISCLKLKSLPRHLLQKTTLQSLEIFDCPSLRERCLRNGTGEDWPYISHIPTITI NGEDVQRYAH" CDS complement(19764702..19767650) /locus_tag="TCM_028973" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG028972t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative isoform 1" /protein_id="EOY27023.1" /db_xref="Phytozome:POPTR_0012s12350.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA21" /translation="MTDAFVSGVLEQLTSIGLHVAENGVRLVVGVNEEVKNLSSTFRT IRAVLVDAEKRQVKEEAVKVWLDKLRNVSYDIEDVLDEWNTAILRSQIPSSTPQSQVR SLIPSSSISIPRLVQRRDIAIKIKELNERLQAIAKEKDDYAFIVNLNRNNDLGPERPK TTYFIDESEICGRDQDRNTIMSMLLGENNHEERGIPIISIVGMGGIGKTTLAQIVYNH HELNAYFQKKIWVCVSDPFDEMRVAKAILETVTGVASSFSELSTVLEKIHESIVGKRF LLVLDDVWTEDERKWQSLKYCLNSGSQGSKILVTTRKENVATIMGCTKLFQLGQLSKE ECWSLFSHIAFFGRNERERESLEDIGKKIADKCQGLPLAAKTLGGLLRFKRSREQWQR ILDSHMWELDEAEKGLFSPLLLSYYDLPSPLRQCFSYCAIFPKDQKIEKDLLIKLWMA QGFLREMEGKKMEIVGEEYFDNLAMRSFFQEFEKDEDDDSIMRCKMHDIVHEFAQLLR KAECFVVASNGIEEQRADCYHENARHLTVILDDEHVAIPNPIYNLKKLRTLRVDSSLY DTSTLNTSLPNLFDQLTCLRMLDLSNNRFRQQCAIEELPRKIGKLMHLRYFNLEGNKG LKQLPETLCNLCNLQTLNIRLCSSLIELPIGFERLVNLRHLQNAGTYGCNSMPPGMQR LTCLQTLEEFVVSSFRGWSIKGRSNISDLGSLAHLRGNLKIIGLGNVRTENEAEDAGL RNKTGLRNLTLSFNSNSKTTRITDEASITDEASVLEALQPPPYLESLNINRMNGPTVF PTWMASLSMLKRVILWACFNWKTLPSMGKLPFLEHLEMWEMKKVKKVGEEFMGVEREE GQTSSSSSSSNNNNIAFPNLKHLKFQFMEEWEEWEFGNPSASIAHDGSSSITIMPCLH SLNIISCLKLKSLPRHLLQKTTLQSLEIFDCPSLRERCLRNGTGEDWPYISHIPTITI NGEDVQRYAH" mobile_element 19767960..19769867 /note="source:INTACT648_F285_scaffold_10-int 1 1964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19769510..19772864) /note="source:INTACT333_F20_scaffold_9-int 4070 7347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19773257..19773394) /note="source:CACAO_M_S_E84604_F20_scaffold_6 3110 3247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19773395..19776056 /note="source:CACAO_M_E49226_F369_scaffold_6 1 2654" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19776057..19776921 /note="source:INTACT384F_F20_scaffold_3-int 10029 10921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19776951..19778919 /note="source:INTACT567_F258_scaffold_9-int 8983 10775" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19779018..19780019 /locus_tag="TCM_028975" /note="dbxref CacaoGD:Thecc1EG028975" mRNA 19779018..19780019 /locus_tag="TCM_028975" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage" CDS 19779462..19779890 /locus_tag="TCM_028975" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27024.1" /translation="MKGVCVPKANKRTYREALIQGKKKEPMEENISRETEDDMVKDKN EKEVAKIRNGGDDKVWEIEYLVNEIEWLSRSAIRCIRGPCYYKIVQSVLFYEGTSVLI QPMGDLEVLLTFGEDDEMNVLLETYLEIFLLWFEMVIPYY" gene 19783421..19786879 /locus_tag="TCM_028976" /note="dbxref CacaoGD:Thecc1EG028976" mRNA join(19783421..19783993,19785841..19786879) /locus_tag="TCM_028976" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene05934.8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020952t1" /inference="similar to AA sequence:ricco:29823.m000212" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc7531t1" gene 19783425..19792139 /locus_tag="TCM_028977" /note="dbxref CacaoGD:Thecc1EG028977" mRNA join(19783425..19783993,19791283..19792139) /locus_tag="TCM_028977" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028765t1" /inference="similar to AA sequence:frave:gene20290" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage" mobile_element 19783661..19783734 /note="source:scaffold_5_CACTA_0612 12439 12518" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19783759..19783809 /note="source:scaffold_5_CACTA_0612 6563 6613" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19783943..19784024 /note="source:scaffold_5_CACTA_0612 12439 12520" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19784202..19784250 /note="source:scaffold_5_CACTA_0612 6571 6619" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19784280..19784358 /note="source:scaffold_5_CACTA_0612 6561 6639" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19784411..19784440 /note="source:scaffold_5_CACTA_0612 6561 6590" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19784527..19784599 /note="source:scaffold_5_CACTA_0612 6561 6633" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19784658..19784759 /note="source:scaffold_5_CACTA_0612 6561 6672" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19784780..19784827 /note="source:scaffold_5_CACTA_0612 6571 6619" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19784857..19785013 /note="source:scaffold_5_CACTA_0612 7124 7278" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19785360..19786829 /note="source:INTACT668_F294_scaffold_4-int 43 1514" /mobile_element_type="retrotransposon:LTR/Copia" CDS 19785849..19786805 /locus_tag="TCM_028976" /note="dbxref ricco:29823.m000212; paralog of Thecc1EG020952t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27025.1" /db_xref="TAIR:AT1G21280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BP26" /translation="MSELSESTTRNTAPNPQLTSQISQANDPPSPYYLHHTDHLGSVV VNPKLTTNNYVAWSRSFLLALSIRNKVGFINGSIPKPSITDDLHPIWNRCNNLIVSWL LNSISQPIASTIFFMESVAEIWNTLKLNYAQPDNTCVCNLQYTLGSVTQRVKIVYAYF IELKCIWEELRNYRPLPHCECGKCNANCFKKFSDQYQKDMVFRFLNGLNESFSAIRSQ IILMDPIPSLDKVYSMVLREESQKNMFLQSQPFLESLAMLAATNVKKKPMKDLTCTHC GKKGHVKEKCYRIIRFPEDFKFTKGKPYVKKGAAVKQCYYNG" mobile_element complement(19786830..19787716) /note="source:CACAO_M_E1841_F5_scaffold_1 24821 25801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19787713..19788136) /note="source:CACAO_M_E1841_F5_scaffold_1 24124 24656" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19788278..19789524) /note="source:CACAO_M_E1841_F5_scaffold_1 23278 24347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19789586..19789720 /note="source:CACAO_M_E58715_F13_scaffold_9 5959 6087" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19789688..19793343 /note="source:INTACT668_F294_scaffold_4-int 1503 5163" /mobile_element_type="retrotransposon:LTR/Copia" CDS 19791310..19792113 /locus_tag="TCM_028977" /note="dbxref frave:gene20290; paralog of Thecc1EG028765t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY27026.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B7R0" /translation="MHDEYMEDFDAYSPYQHYQQHTTPKLCSPEPSSSSETPSSLNSN DISLNPPFNDSISPTADSFSVDMSTSQEAVAPTRKSTRQKQPPKYLDAYYVDIPSQSN SVTLHPITKNLSTKQLSPAHKAFAIALSHIHEPNSCHQAINYCHWREAMDLELKALQD NGTWTIVPLPSNPHVIGCKWVYKIKMKANGEIERYKARLVAKGYSQVVGFDYQETFSP VAKQSTVRVFFALAAANGWSLSQLDINNAFFNGDLDEEVYMEIAQGYAI" gene 19792411..19793540 /locus_tag="TCM_028978" /note="dbxref CacaoGD:Thecc1EG028978" mRNA 19792411..19793540 /locus_tag="TCM_028978" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010117t1" /inference="similar to AA sequence:frave:gene22832" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.73 coverage" CDS 19792818..19793264 /locus_tag="TCM_028978" /note="dbxref frave:gene22832; paralog of Thecc1EG010117t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8, putative" /protein_id="EOY27027.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B7R0" /translation="MSSSRKSITGYCVFIGDTLVSWKSKKQAVVARSSAEAEYRSMAS TCCELMWLKHLLADFKIDHDDPIDLYSDSQSAIHISKNPVFHEQTEHIEMDCHFIREK VLASTIKPLHISTDLQVVDIFTKALLPKQFYKLLGKMSVHDIHTSS" mobile_element 19793350..19793687 /note="source:INTACT668_F294_scaffold_4-int 5130 5470" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(19793891..19794696) /locus_tag="TCM_028979" /note="dbxref CacaoGD:Thecc1EG028979" mRNA complement(19793891..19794696) /locus_tag="TCM_028979" /product="Disease resistance-responsive family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene01238" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028980t1" /inference="similar to AA sequence:frave:gene01238" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage" CDS complement(19794084..19794629) /locus_tag="TCM_028979" /note="dbxref frave:gene01238; paralog of Thecc1EG028980t1" /codon_start=1 /product="Disease resistance-responsive family protein, putative" /protein_id="EOY27028.1" /translation="METKTNVSLVFLVVSGIVMVFFSVPAKADDGLKETNMTVYFHDY SSGGPNSTDLPVVGFPGKLWNFTQFGTLYVVDDLVTEGPELTSATVGRGQGTYVIASL DGLNAYVSFSLVFTNMAYNGSTIQILGNNNQFKAVREYSVASGTGKFRYATGYATFET IFLDQSTSYSILRVNVSARHY" mobile_element 19796494..19796619 /note="source:CACAO_M_E5326_F22_scaffold_2 3409 3505" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19797414..19798231) /locus_tag="TCM_028980" /note="dbxref CacaoGD:Thecc1EG028980" mRNA complement(join(19797414..19797778,19797846..19798231)) /locus_tag="TCM_028980" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400050445.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028979t1" /inference="similar to AA sequence:frave:gene01238" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(19797447..19797778,19797846..19797990)) /locus_tag="TCM_028980" /note="dbxref frave:gene01238; paralog of Thecc1EG028979t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27029.1" /translation="MEPKTSFSLVILVILSISMAKFSIPAKADHNEHKETKISVYFHD YASSDLFVFDDLIIEGPDPKSASVGRGQGITVTACLDGLNVYVSLLIVFTNEAYNGST IQIQGNNNQLKVIREYGVVSGTGKFWYAKGYATFENYFFDPSTSYSIIRCNISIRH" mobile_element 19798589..19799236 /note="source:scaffold_9_CACTA_0931 1 663" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19799267..19800371) /note="source:CACAO_M_E49344_F17_scaffold_7 451 1563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19800551..19800942) /note="source:CACAO_M_S_E90022_F9_scaffold_8 12659 13038" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19801347..19807073) /locus_tag="TCM_028981" /note="dbxref CacaoGD:Thecc1EG028981" mRNA complement(join(19801347..19802099,19802312..19802440, 19803576..19803890,19805419..19805544,19805949..19806518, 19807005..19807073)) /locus_tag="TCM_028981" /product="Peptidase M20/M25/M40 family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016901001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037723t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016901001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16095t1" CDS complement(join(19801686..19802099,19802312..19802440, 19803576..19803890,19805419..19805544,19805949..19806311)) /locus_tag="TCM_028981" /note="paralog of Thecc1EG037723t1" /codon_start=1 /product="Peptidase M20/M25/M40 family protein" /protein_id="EOY27030.1" /db_xref="Phytozome:GSVIVT01016901001" /db_xref="TAIR:AT1G51760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04373" /translation="MSFSKFVSFVLMLHLLNTTVVLSSSSLSSSNGWSEIPKKFLHFA KGQELVDWIVGIRRKIHENPELGYEEFETSKLIREELDKMGIPYKYPVSVTGVVGYVG TGKPPFVAIRADMDALAMEELVEFEHKSKNPGKMHACGHDAHVSMLLGAAKILKEHLE ELKGTVLLVFQPAEEGGGGAKKMLDAGVLKNVDAIFGLHVVPDQPIGTVASRPGPLLA GSGFFEAVISGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQ GGGAFNVIPDSVTIGGTFRAFSKESLTQLKQRIEEVIKGQAAVQRCSATVDFYENEKP VPIFPPTVNNKDLHEHFQNVAGDMLGADKVKDMQPLMGSEDFAFYQEAIPGYFFMLGM RDDTGPQLKSVHSPYFMINEDVLPYGAALHASLAARYLLAAEPKFHSPKEELHDEL" gene 19812691..19815608 /locus_tag="TCM_028982" /note="dbxref CacaoGD:Thecc1EG028982" mRNA join(19812691..19813317,19813460..19813606, 19814660..19814887,19814984..19815608) /locus_tag="TCM_028982" /product="Mannose-binding lectin superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g02590.1" /inference="similar to AA sequence:ricco:30146.m003434" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14357t00001" CDS join(19813129..19813317,19813460..19813606, 19814660..19814887,19814984..19815316) /locus_tag="TCM_028982" /note="dbxref ricco:30146.m003434" /codon_start=1 /product="Mannose-binding lectin superfamily protein" /protein_id="EOY27031.1" /db_xref="TAIR:AT1G73040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSM3" /translation="MHFSSLNPSSLEETKLHFKPSKQEAKSGFCNEDDHTPWFARLQE FLEKSDYSNGLKLVGRSNKEIFLPPVYHLKLVVVKSSTALEDLLDDILRTWRPETLSS LSISRSNLPKDGGKDQPSGKKKMSVVIGPWGGTGGAAWDDGTYHGVREITLVYDRCID SIRVIYDKNGKPVTAEKHGGMGGNKTAEIKLNFPEEFLISVSGHYCPVVHGGGPVIRS LTFKSNQRTFGPYGVEEGTPFTFSMEGGRIAGFNGRSGWYLDSIGFRLSRGQSPKLFQ KVQKGFQRLASSVSKSPAKNNN" gene complement(19816820..19818237) /locus_tag="TCM_028983" /note="dbxref CacaoGD:Thecc1EG028983" mRNA complement(join(19816820..19817271,19817758..>19818223)) /locus_tag="TCM_028983" /product="Vacuolar protein sorting 46.1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s19530.1" /inference="similar to AA sequence:TAIR:AT1G17730.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is medium, protein is partial5; similar to RNA sequence, EST 0.58 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01225t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16138t2" mRNA complement(join(19816953..19817271,19817758..19818237)) /locus_tag="TCM_028983" /product="Vacuolar protein sorting 46.1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s19530.1" /inference="similar to AA sequence:TAIR:AT1G17730.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16138t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16138t2" CDS complement(join(19816985..19817271,19817758..>19818223)) /locus_tag="TCM_028983" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Vacuolar protein sorting 46.1 isoform 2" /protein_id="EOY27033.1" /db_xref="TAIR:AT1G17730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZ60" /translation="TEEAKQSQNAINTPKKKNKKPNFLTLISSNPLRIKSFSANEEKK NPAMGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKSEKLKVKKAIEKGNMDGARIYA ENAIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQK MSETMDQFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGL PQPAAHAVSTKTQEKVDEDDLSRRLAELKARG" CDS complement(join(19816985..19817271,19817758..19818082)) /locus_tag="TCM_028983" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Vacuolar protein sorting 46.1 isoform 1" /protein_id="EOY27032.1" /db_xref="TAIR:AT1G17730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZ60" /translation="MGNTEKLLNQIMDLKFTSKSLQRQARKCEKEEKSEKLKVKKAIE KGNMDGARIYAENAIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSL ESSLATGNLQKMSETMDQFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVA DDYGLEVSVGLPQPAAHAVSTKTQEKVDEDDLSRRLAELKARG" gene 19819515..19826021 /locus_tag="TCM_028984" /note="dbxref CacaoGD:Thecc1EG028984" mRNA join(19819515..19820219,19820910..19820979, 19821093..19821208,19821755..19821881,19821965..19822065, 19822155..19822246,19822355..19822459,19822571..19822840, 19823026..19823158,19823240..19823353,19823441..19823511, 19823607..19823734,19824088..19824170,19824273..19824380, 19825119..19825277,19825402..19826021) /locus_tag="TCM_028984" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016897001" /inference="similar to AA sequence:Phytozome:GSVIVT01016897001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4551t4" mRNA join(19819515..19820219,19820910..19820979, 19821093..19821208,19821755..19821881,19821965..19822065, 19822155..19822246,19822355..19822459,19822595..19822840, 19823026..19823158,19823240..19823353,19823441..19823511, 19823607..19823734,19824088..19824170,19824273..19824380, 19825119..19825277,19825402..19826021) /locus_tag="TCM_028984" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016897001" /inference="similar to AA sequence:Phytozome:GSVIVT01016897001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:PASA:2:TSA:puevd3b028027t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4551t4" mRNA join(19819921..19820219,19820910..19820979, 19821093..19821208,19821755..19821881,19821965..19822065, 19822155..19822246,19822355..19822459,19822571..19822840, 19823026..19823158,19823240..19823353,19823441..19823511, 19823607..19823734,19824088..19824170,19824286..19824380, 19825119..19825278,19825402..19825852) /locus_tag="TCM_028984" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016897001" /inference="similar to AA sequence:Phytozome:GSVIVT01016897001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4551t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4551t4" CDS join(19820046..19820219,19820910..19820979, 19821093..19821208,19821755..19821881,19821965..19822065, 19822155..19822246,19822355..19822459,19822571..19822840, 19823026..19823158,19823240..19823353,19823441..19823511, 19823607..19823734,19824088..19824170,19824273..19824380, 19825119..19825277,19825402..19825575) /locus_tag="TCM_028984" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27034.1" /db_xref="Phytozome:GSVIVT01016897001" /db_xref="TAIR:AT1G73020.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A0MFS9" /translation="MNGVGEDQIVFEIAVVVPKRNLKEENEGYDCVEVLVNEFRNVGF VVERVIGLSDEFIKLAAPLETLGRAAAKLHMKKPTRIGIDLQFEWEEVEAFVRQPDGS LFSWCERFQCYHHLIYETVNKKNSCITLKFDGKEIQWEVGESLLRRLELEGIVRQVFP LHDETKRKKLLRNWALNCWDFTNQPIDDIYAYFGTKIAVYFAFLGMYTRWMIFPAAFG LILQLVDFGSLQLLVLPAFFISIVLWAVLFFQFWKRKNSALSARWHLNFSVSTSQGYK LLGREWGSLQSPMELTKNLGTDKTKEKEAFQKYEWFSYLKRFRNDAIIILSIICLQLP FELAYAHLYEVIKSDIVKFGLTAVYLLVIQYFTKIGGKISIRLIKYENNENTEYKADS LVYKVFGLYFMQSYIGVFYHALLHRNFMTLRQVLIQRLILSEVLENLLENSLPYLKYS YKKYRAVRNKKKREKGSTGKIQFTSRVEKEYLKPTYSASICEELEDGLFDDFLELALQ FGMIMMFACAFPLAFAFSALNNIAEIRTDALKLLAMLKRPGPRAAATIGAWLNIFQFL ILMSICTNSALLVWLYDQEGKWKIEPGLAAILVMEHVLLLIKFGFSRFVPEEPAWVRA NRMKNATQAQDMCSKQLLRSISGGEKAFSGSIPRKTPDGLKKTVMQRATD" CDS join(19820046..19820219,19820910..19820979, 19821093..19821208,19821755..19821881,19821965..19822065, 19822155..19822246,19822355..19822459,19822595..19822840, 19823026..19823158,19823240..19823353,19823441..19823511, 19823607..19823734,19824088..19824170,19824273..19824380, 19825119..19825277,19825402..19825575) /locus_tag="TCM_028984" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY27035.1" /db_xref="Phytozome:GSVIVT01016897001" /db_xref="TAIR:AT1G73020.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A0MFS9" /translation="MNGVGEDQIVFEIAVVVPKRNLKEENEGYDCVEVLVNEFRNVGF VVERVIGLSDEFIKLAAPLETLGRAAAKLHMKKPTRIGIDLQFEWEEVEAFVRQPDGS LFSWCERFQCYHHLIYETVNKKNSCITLKFDGKEIQWEVGESLLRRLELEGIVRQVFP LHDETKRKKLLRNWALNCWDFTNQPIDDIYAYFGTKIAVYFAFLGMYTRWMIFPAAFG LILQLVDFGSLQLLVLPAFFISIVLWAVLFFQFWKRKNSALSASTSQGYKLLGREWGS LQSPMELTKNLGTDKTKEKEAFQKYEWFSYLKRFRNDAIIILSIICLQLPFELAYAHL YEVIKSDIVKFGLTAVYLLVIQYFTKIGGKISIRLIKYENNENTEYKADSLVYKVFGL YFMQSYIGVFYHALLHRNFMTLRQVLIQRLILSEVLENLLENSLPYLKYSYKKYRAVR NKKKREKGSTGKIQFTSRVEKEYLKPTYSASICEELEDGLFDDFLELALQFGMIMMFA CAFPLAFAFSALNNIAEIRTDALKLLAMLKRPGPRAAATIGAWLNIFQFLILMSICTN SALLVWLYDQEGKWKIEPGLAAILVMEHVLLLIKFGFSRFVPEEPAWVRANRMKNATQ AQDMCSKQLLRSISGGEKAFSGSIPRKTPDGLKKTVMQRATD" CDS join(19820046..19820219,19820910..19820979, 19821093..19821208,19821755..19821881,19821965..19822065, 19822155..19822246,19822355..19822459,19822571..19822840, 19823026..19823158,19823240..19823353,19823441..19823511, 19823607..19823734,19824088..19824170,19824286..19824306) /locus_tag="TCM_028984" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY27036.1" /db_xref="Phytozome:GSVIVT01016897001" /db_xref="TAIR:AT1G73020.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A0MFS9" /translation="MNGVGEDQIVFEIAVVVPKRNLKEENEGYDCVEVLVNEFRNVGF VVERVIGLSDEFIKLAAPLETLGRAAAKLHMKKPTRIGIDLQFEWEEVEAFVRQPDGS LFSWCERFQCYHHLIYETVNKKNSCITLKFDGKEIQWEVGESLLRRLELEGIVRQVFP LHDETKRKKLLRNWALNCWDFTNQPIDDIYAYFGTKIAVYFAFLGMYTRWMIFPAAFG LILQLVDFGSLQLLVLPAFFISIVLWAVLFFQFWKRKNSALSARWHLNFSVSTSQGYK LLGREWGSLQSPMELTKNLGTDKTKEKEAFQKYEWFSYLKRFRNDAIIILSIICLQLP FELAYAHLYEVIKSDIVKFGLTAVYLLVIQYFTKIGGKISIRLIKYENNENTEYKADS LVYKVFGLYFMQSYIGVFYHALLHRNFMTLRQVLIQRLILSEVLENLLENSLPYLKYS YKKYRAVRNKKKREKGSTGKIQFTSRVEKEYLKPTYSASICEELEDGLFDDFLELALQ FGMIMMFACAFPLAFAFSALKLEQTP" gene complement(19826450..19827454) /locus_tag="TCM_028985" /note="dbxref CacaoGD:Thecc1EG028985" mRNA complement(join(19826450..19826881,19827264..19827454)) /locus_tag="TCM_028985" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30146.m003430" /inference="similar to AA sequence:Phytozome:POPTR_0001s19500.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage" CDS complement(join(19826553..19826881,19827264..19827372)) /locus_tag="TCM_028985" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27037.1" /db_xref="Phytozome:POPTR_0001s19500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GH52" /translation="MKRHNLTRSNRGASNLITRWSIGVKSIRSIFKVTERSIIPTSSS GPHRTYKTMSVKKTVALDNAQVVKSNVTSKRRHFNQCFSFKEISMEPAPSLSHLDSNK FKSEIKRWAKAVVAYARQVSGRFGSSRRSDPYGSSRSSADVHS" gene 19830418..19831332 /locus_tag="TCM_028986" /note="dbxref CacaoGD:Thecc1EG028986" mRNA join(19830418..19830955,19831068..19831332) /locus_tag="TCM_028986" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s01180.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4517t1" CDS join(19830428..19830955,19831068..19831121) /locus_tag="TCM_028986" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27038.1" /translation="MDEHRTEAVDRISDLPEPILHHVLSKVEATDAARTSVLSKAWKS IYDSFPVVVLDELFIEEYVKSYELSSEERQKYLSNLEQFRTRYNVHIRGVGADEEKGK LLAMMIIREKFMLLSNNSLKRINQQKELLSIKKFRFRIFHLDDEFASVIDNWVGLVTE RNIEELVIDLGCTFLPVAQGFLPSNSYIYAQFI" gene 19831548..19832182 /locus_tag="TCM_028987" /note="dbxref CacaoGD:Thecc1EG028987" mRNA join(19831548..19831593,19831865..19832182) /locus_tag="TCM_028987" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s01180.1" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2604t1" CDS join(19831588..19831593,19831865..19832065) /locus_tag="TCM_028987" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27039.1" /translation="MADSFIQQELPDVSVPPPSEVTSLKLLICATPRSLYYAALVNGL FWSCRPKTLKIWRVVDWHFGLIRV" gene complement(19832963..19833987) /locus_tag="TCM_028988" /note="dbxref CacaoGD:Thecc1EG028988" mRNA complement(join(19832963..19833270,19833367..19833534, 19833660..19833782,19833883..19833987)) /locus_tag="TCM_028988" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15032t00001" CDS complement(join(19833379..19833534,19833660..19833782, 19833883..19833981)) /locus_tag="TCM_028988" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27040.1" /translation="MEYNLLIKAALQGCTNLQLHGGFNNPNSTYRIKVKCKRCQEENV IEMSLGHVPTSSSTSRKTNSSKSPVHFDGQCDIKSCAQKIWAQMIPGCGAPYARNSKV EYKEIMKFKFGGAKPVGFIFGGG" gene complement(19834993..19837051) /locus_tag="TCM_028989" /note="dbxref CacaoGD:Thecc1EG028989" mRNA complement(join(19834993..19836678,19836782..19837051)) /locus_tag="TCM_028989" /product="Eukaryotic aspartyl protease family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00260.1" /inference="similar to AA sequence:ricco:29805.m001550" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4527t1" CDS complement(join(19835369..19836678,19836782..19836857)) /locus_tag="TCM_028989" /note="dbxref ricco:29805.m001550" /codon_start=1 /product="Eukaryotic aspartyl protease family protein, putative" /protein_id="EOY27041.1" /db_xref="TAIR:AT5G10770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3X3" /translation="MAFVWFLIFSLPLAIAVAPLLAELQENKLEVNQSGIHVKIYHVQ GPESSLTPEFSLSFSNFLLRDEERVKALASIVAQDRGRGRGSTNSALSQRLGYWSSAK SLSIPLNPGLSIGTGNYYVRIGLGTPAKYYDVVMDTGSSFSWIQCEPCAVYCHSQADP VFNPSASTTYKYLSCAASECSSLKEATLNNPLCSTSNKCLYTASYGDSSYSIGYLSQD LLTLSQSQTFSNFVYGCGQDNEGLFGRAAGLVGLARDKLSMLAQVSSKYGYGFSYCLP TATSTDAGGFLKIGKPSLSTFKFTPMITDPHQNPSLYYLRLTSITVAGIPLRVAAAEY RVPTIIDSGTVITRLPRSLYSALRDAFVKIMSKKYAQAPAISILDCCFLGTVKTMSAA PEIQMMFQGGADLTLGASNVLIQADKGVTCLAFAGWSQTAVIGNHQQQTFEVAYDVSD SRIGFAANACH" gene complement(19837100..19840424) /locus_tag="TCM_028990" /note="dbxref CacaoGD:Thecc1EG028990" mRNA complement(join(19837100..19837359,19837882..19838435, 19838583..19838673,19838772..19838911,19839208..19839371, 19839930..19840098,19840220..19840424)) /locus_tag="TCM_028990" /product="Ribosomal L28e protein family isoform 1" /inference="alignment:exonerate- protein:2:ricco:29912.m005411.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037713t1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02689t00002" mRNA complement(join(19837808..19838435,19839208..19839371, 19839930..19840098,19840220..19840344)) /locus_tag="TCM_028990" /product="Ribosomal L28e protein family isoform 2" /inference="alignment:exonerate- protein:2:ricco:29912.m005411.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037713t1" /inference="similar to AA sequence:Phytozome:Glyma15g02610.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10333t00001; inference alignment:Newbler:10:TSA:cgbaL_g02689t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc78t30" CDS complement(join(19838295..19838435,19839208..19839371, 19839930..19840077)) /locus_tag="TCM_028990" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037713t1" /codon_start=1 /product="Ribosomal L28e protein family isoform 2" /protein_id="EOY27043.1" /db_xref="Phytozome:Glyma15g02610.1" /db_xref="TAIR:AT2G19730.3" /db_xref="UniProtKB/TrEMBL:UniRef50_O82204" /translation="MATVPGQLIWEIVKKNNSFLVKQFGRGTASVQFSKEPNNLYNLN SYKHSGLANKKTVTIQSGGKDQSVLLATTKTKKQNKPSSLLHKSVMRKEFPRMAKAVK NQVADNYYRPDLTKAALARLSAVNRSLKVAKSGVKKRNRQALKIRGRK" CDS complement(join(19838295..19838435,19838583..19838673, 19838772..19838911,19839208..19839371,19839930..19840077)) /locus_tag="TCM_028990" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037713t1" /codon_start=1 /product="Ribosomal L28e protein family isoform 1" /protein_id="EOY27042.1" /translation="MATVPGQLIWEIVKKNNSFLVKQFGRGTASVQFSKEPNNLYNLN SYKHSGLANKKTVTIQSGGKDQSVLLATTKTKKQNKPSSLLHKSVMRKEFPRMAKAVK NQVWYCLHSNSNFLKVLSCGDEAITGKKDLFVGFFYEIYLLRLASELLNLSPTVLPFL PTFPPFFHLALGCYYILNYINVADNYYRPDLTKAALARLSAVNRSLKVAKSGVKKRNR QALKIRGRK" gene complement(19840735..19846970) /locus_tag="TCM_028991" /note="dbxref CacaoGD:Thecc1EG028991" mRNA complement(join(19840735..19842345,19843476..19844557, 19845699..19846052,19846586..19846634)) /locus_tag="TCM_028991" /product="Tudor/PWWP/MBT superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30146.m003427" /inference="similar to AA sequence:ricco:30146.m003427" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4558t2; alternateUTRof:Thecc1EG028991t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc801t3" mRNA complement(join(19840747..19842345,19843476..19844557, 19845699..19846052,19846187..19846219,19846586..19846970)) /locus_tag="TCM_028991" /product="Tudor/PWWP/MBT superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30146.m003427" /inference="similar to AA sequence:ricco:30146.m003427" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc801t3" CDS complement(join(19841258..19842345,19843476..19844557, 19845699..19845889)) /locus_tag="TCM_028991" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30146.m003427" /codon_start=1 /product="Tudor/PWWP/MBT superfamily protein, putative isoform 1" /protein_id="EOY27044.1" /db_xref="TAIR:AT1G51745.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVN6" /translation="MGSPDEPNTKGIDASVGGLVWVRRRNGSWWPGRIMGLDELSESC LVSPRSGTPVKLLGREDASVDWYNLEKSKRVKAFRCGEYDECIEKAKASAANSSKKAV KYARREDAILHALEIESARLGKDHPDYFSRKDNSGGDQGSSVRESPTISHSGKENEDM TDEMSDTEDDSDSAPELSQSGISFEEPNHINGTKGHCVLVKRRKTPNDSEDDGTEGIK RMRGLEDLGMGVGSKRKAQTAGVLELVQQDNASFYDPNMGNCVSNGSPVNGSRNHSSS LKRKRSQVANVHEFLKRKNRRRPLTKVLESTAMVSVPVVCDEIPSSSGSPLRGVSDSK VSGMDSNESRRSVSAVINNNNNNINNNSDSTGVSCENGVSLNASEHAADASQTNNKTK YNEISSVLGLAENGSSDKLFDVPFVGEDKPSADFSPIFVSCSSETPEVGDLGRQAETE GHNESGCTRSVAAHTNSISQRIEKGTAEWQLKGKRKSRQISKNRKHDSRKYADMDDEP NACLAGLEHLDGFSQGSDQKVDCNGVGGSVAPYNCTLQSKSKSVVEEQLDGFQDWKAM SREPRARGPIVEAKILPDGSVTPQRLLPYRQSRYTVHSRYQMTDFPGKPYSADSSFYD VKIEVKANYRPQHVPLLSLMSKLNGKAIIGHPLTVEVLSDDYYGSLTREAAMECTEIG LVVKRNSEGGRVPTKHMKLHSRFLPRKSAKAKKSGLLSKKIRKLSSLTGQKLGLADRK LVVEKPKGPVIACVPLKLVFSRINEALNGSARPTHAPFNVKQFMSR" CDS complement(join(19841258..19842345,19843476..19844557, 19845699..19845889)) /locus_tag="TCM_028991" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30146.m003427" /codon_start=1 /product="Tudor/PWWP/MBT superfamily protein, putative isoform 1" /protein_id="EOY27045.1" /db_xref="TAIR:AT1G51745.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVN6" /translation="MGSPDEPNTKGIDASVGGLVWVRRRNGSWWPGRIMGLDELSESC LVSPRSGTPVKLLGREDASVDWYNLEKSKRVKAFRCGEYDECIEKAKASAANSSKKAV KYARREDAILHALEIESARLGKDHPDYFSRKDNSGGDQGSSVRESPTISHSGKENEDM TDEMSDTEDDSDSAPELSQSGISFEEPNHINGTKGHCVLVKRRKTPNDSEDDGTEGIK RMRGLEDLGMGVGSKRKAQTAGVLELVQQDNASFYDPNMGNCVSNGSPVNGSRNHSSS LKRKRSQVANVHEFLKRKNRRRPLTKVLESTAMVSVPVVCDEIPSSSGSPLRGVSDSK VSGMDSNESRRSVSAVINNNNNNINNNSDSTGVSCENGVSLNASEHAADASQTNNKTK YNEISSVLGLAENGSSDKLFDVPFVGEDKPSADFSPIFVSCSSETPEVGDLGRQAETE GHNESGCTRSVAAHTNSISQRIEKGTAEWQLKGKRKSRQISKNRKHDSRKYADMDDEP NACLAGLEHLDGFSQGSDQKVDCNGVGGSVAPYNCTLQSKSKSVVEEQLDGFQDWKAM SREPRARGPIVEAKILPDGSVTPQRLLPYRQSRYTVHSRYQMTDFPGKPYSADSSFYD VKIEVKANYRPQHVPLLSLMSKLNGKAIIGHPLTVEVLSDDYYGSLTREAAMECTEIG LVVKRNSEGGRVPTKHMKLHSRFLPRKSAKAKKSGLLSKKIRKLSSLTGQKLGLADRK LVVEKPKGPVIACVPLKLVFSRINEALNGSARPTHAPFNVKQFMSR" gene complement(19847311..19850570) /locus_tag="TCM_028992" /note="dbxref CacaoGD:Thecc1EG028992" mRNA complement(join(19847311..19848321,19849743..19849859, 19850438..19850570)) /locus_tag="TCM_028992" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(19848228..19848321,19849743..19849859, 19850438..19850508)) /locus_tag="TCM_028992" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27046.1" /translation="MTCSRASLVFSIELFELGANIVLRKRKRCKQVMDVLELAKRKIT VFLEVLSVMASGKEQEENSLVKRQRSTFPSVDFLVESCVGKQRSPLPSI" mobile_element 19848976..19862489 /note="source:INTACT349_F203_scaffold_6-int 1 13514" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19862612..19872316 /locus_tag="TCM_028994" /note="dbxref CacaoGD:Thecc1EG028994" mRNA join(19862612..19862827,19863586..19863651, 19863767..19863834,19864108..19864138,19864340..19864409, 19866249..19866306,19866737..19866865,19868957..19869048, 19869947..19870031,19870552..19870630,19870790..19870829, 19871280..19871392,19871743..19872316) /locus_tag="TCM_028994" /product="Ubiquitin-conjugating enzyme family protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g025330.1" /inference="similar to AA sequence:ricco:30146.m003426" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04962t00001" CDS join(19862821..19862827,19863586..19863651, 19863767..19863834,19864108..19864138,19864340..19864409, 19866249..19866306,19866737..19866865,19868957..19869048, 19869947..19870031,19870552..19870630,19870790..19870829, 19871280..19871392,19871743..19872152) /locus_tag="TCM_028994" /note="dbxref ricco:30146.m003426" /codon_start=1 /product="Ubiquitin-conjugating enzyme family protein" /protein_id="EOY27047.1" /db_xref="TAIR:AT1G51730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GH49" /translation="MTDYVQEQEMEIEALEAILMDEFKEIHSGESGLSTSNRCFQITL SPQDDDTDQSTTPVQLALIFSHTEKYPDEPPLLNVKSIRGIQISDLKVVKEKLEQEAS ENLGMAMIYTLVTSAKEWLSERYGQDADADNAEEEEATKDEVIVPHGEPVTVDTFLAW RERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGRATVKGAAPVNEGSDEEDEE DIDFDDDDFEDDEEDMLEHYLAENIGLLCEGNTSISATLLVSRLSFQWPVIFKIKYLL RLITIDVPGGLPQHYQPGQFTWKCHQDFPSATLPLSTPWFPFFPLTTTSPSSANRSTP SKQSRPTIEIQPCESHLQDIDACIVDIVTVFWTNKPNVGPACCKAITGMSQDCFYRLI PPSINDYFSPYIKELCSAAPRYA" gene complement(19872403..19893274) /locus_tag="TCM_028995" /note="dbxref CacaoGD:Thecc1EG028995" mRNA complement(join(19872403..19872891,19873317..19873390, 19873810..19873890,19874611..19874723,19874841..19874971, 19875065..19875155,19876159..19876244,19876535..19876590, 19876812..19876883,19889026..19889112,19889205..19889264, 19889365..19889451,19889771..19889972,19890072..19890201, 19891073..19891671,19892574..19892711,19892941..19893274)) /locus_tag="TCM_028995" /product="Amino acid dehydrogenase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g01510.1" /inference="similar to AA sequence:ricco:30146.m003425" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc174t10; alternateUTRof:Thecc1EG028995t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4601t3" mRNA complement(join(19872403..19872891,19873317..19873390, 19873810..19873890,19874611..19874723,19874841..19874971, 19875065..19875155,19876159..19876244,19876535..19876590, 19876812..19876883,19889026..19889112,19889205..19889264, 19889365..19889451,19889771..19889972,19890072..19890201, 19891073..19891671,19891833..19891938,19892574..19892711, 19892941..19893274)) /locus_tag="TCM_028995" /product="Amino acid dehydrogenase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g01510.1" /inference="similar to AA sequence:ricco:30146.m003425" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc174t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4601t3" mRNA complement(join(19872412..19872891,19873317..19873390, 19873810..19873890,19874611..19874702,19874814..19874971, 19875065..19875155,19876159..19876244,19876535..19876590, 19876812..19876883,19889026..19889112,19889205..19889264, 19889365..19889451,19889771..19889972,19890072..19890201, 19891073..19891671,19892574..19892711,19892941..19893210)) /locus_tag="TCM_028995" /product="Amino acid dehydrogenase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g01510.1" /inference="similar to AA sequence:Phytozome:Glyma08g20930.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4601t3" CDS complement(join(19872816..19872891,19873317..19873390, 19873810..19873890,19874611..19874723,19874841..19874971, 19875065..19875155,19876159..19876244,19876535..19876590, 19876812..19876883,19889026..19889112,19889205..19889264, 19889365..19889451,19889771..19889972,19890072..19890201, 19891073..19891628)) /locus_tag="TCM_028995" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30146.m003425" /codon_start=1 /product="Amino acid dehydrogenase family protein isoform 2" /protein_id="EOY27049.1" /db_xref="TAIR:AT1G51720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I9M9" /translation="MLLPGGGLGMNSTMDDMNLIQAQRHLVRDLGEEIDLEIGPGDDD PSFANTPSLIGGPPREPSAEEQDENKQMAMVSQLPNDDQDTSKSQTPKRKKKVVKRWR EEWADTYKWAYVDVKEGTARIFCSVCKEYGRKHRRNPYGNEGSRNMQMSALEEHNNSL LHKEALRLQMASKDKIVVDKPIFVKALMSKTAGSIIEAALKRDPHEAEFIQSVQEAVH ALERVIAKNSHYVSIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRG GIRFHPTMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFM NEIYRYFGPDKDLPSEEMGVGIREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTE ATAYGLVFFSQLILAEMNKDIKGLRCVVSGFGKIAMHVLEKLVAVGALPITVSDSKGY LVDEDGFDYMKISFLRDLKAQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCGSQN EIDQADAINLVNVLVIFLGSNMPCTPEAVDVLKKANVLIAPAMAAGSGGVVAGEIELN HECNVMHWSPEDFESKLQEAMKQTFHRALKAANDFGYQKESPEALLHGAVISAFLAIA QAMTDQGCV" CDS complement(join(19872816..19872891,19873317..19873390, 19873810..19873890,19874611..19874723,19874841..19874971, 19875065..19875155,19876159..19876244,19876535..19876590, 19876812..19876883,19889026..19889112,19889205..19889264, 19889365..19889451,19889771..19889972,19890072..19890201, 19891073..19891628)) /locus_tag="TCM_028995" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30146.m003425" /codon_start=1 /product="Amino acid dehydrogenase family protein isoform 2" /protein_id="EOY27050.1" /db_xref="TAIR:AT1G51720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I9M9" /translation="MLLPGGGLGMNSTMDDMNLIQAQRHLVRDLGEEIDLEIGPGDDD PSFANTPSLIGGPPREPSAEEQDENKQMAMVSQLPNDDQDTSKSQTPKRKKKVVKRWR EEWADTYKWAYVDVKEGTARIFCSVCKEYGRKHRRNPYGNEGSRNMQMSALEEHNNSL LHKEALRLQMASKDKIVVDKPIFVKALMSKTAGSIIEAALKRDPHEAEFIQSVQEAVH ALERVIAKNSHYVSIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRG GIRFHPTMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFM NEIYRYFGPDKDLPSEEMGVGIREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTE ATAYGLVFFSQLILAEMNKDIKGLRCVVSGFGKIAMHVLEKLVAVGALPITVSDSKGY LVDEDGFDYMKISFLRDLKAQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCGSQN EIDQADAINLVNVLVIFLGSNMPCTPEAVDVLKKANVLIAPAMAAGSGGVVAGEIELN HECNVMHWSPEDFESKLQEAMKQTFHRALKAANDFGYQKESPEALLHGAVISAFLAIA QAMTDQGCV" CDS complement(join(19872816..19872891,19873317..19873390, 19873810..19873890,19874611..19874702,19874814..19874971, 19875065..19875155,19876159..19876244,19876535..19876590, 19876812..19876883,19889026..19889112,19889205..19889264, 19889365..19889451,19889771..19889972,19890072..19890201, 19891073..19891628)) /locus_tag="TCM_028995" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Amino acid dehydrogenase family protein isoform 1" /protein_id="EOY27048.1" /db_xref="Phytozome:Glyma08g20930.1" /db_xref="TAIR:AT1G51720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I9M9" /translation="MLLPGGGLGMNSTMDDMNLIQAQRHLVRDLGEEIDLEIGPGDDD PSFANTPSLIGGPPREPSAEEQDENKQMAMVSQLPNDDQDTSKSQTPKRKKKVVKRWR EEWADTYKWAYVDVKEGTARIFCSVCKEYGRKHRRNPYGNEGSRNMQMSALEEHNNSL LHKEALRLQMASKDKIVVDKPIFVKALMSKTAGSIIEAALKRDPHEAEFIQSVQEAVH ALERVIAKNSHYVSIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRG GIRFHPTMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFM NEIYRYFGPDKDLPSEEMGVGIREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTE ATAYGLVFFSQLILAEMNKDIKGLRCVVSGFGKIAMHVLEKLVAVGALPITVSDSKGY LVDEDGFDYMKISFLRDLKAQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCGSQN EIDQADAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGSGGVVAGEIE LNHECNVMHWSPEDFESKLQEAMKQTFHRALKAANDFGYQKESPEALLHGAVISAFLA IAQAMTDQGCV" mobile_element 19876949..19877084 /note="source:INTACT123_F40_scaffold_10-int 1 139" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19877533..19880033) /note="source:CACAO_M_S_E66869_F40_scaffold_6 2280 4738" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19880364..19880828) /note="source:scaffold_4_CACTA_0503 9117 9609" /mobile_element_type="transposon:TIR/CACTA" gene 19881204..19883230 /locus_tag="TCM_028996" /note="dbxref CacaoGD:Thecc1EG028996" mRNA 19881204..19883230 /locus_tag="TCM_028996" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8, putative" /inference="alignment:exonerate-protein:2:frave:gene29253" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036284t1" /inference="similar to AA sequence:Phytozome:Glyma01g29320.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2662t1" mobile_element complement(19881257..19882719) /note="source:CACAO_M_S_E66869_F40_scaffold_6 780 2288" /mobile_element_type="retrotransposon:LTR/Copia" CDS 19881793..19882428 /locus_tag="TCM_028996" /note="paralog of Thecc1EG036284t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8, putative" /protein_id="EOY27051.1" /db_xref="Phytozome:Glyma01g29320.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C6A5" /translation="MVEEVKALAKNETLELVTSPLGKKPIGCQWVFTVKHMANGLVER YKARFEAKGFTHTYGLNYQDTFAPIAKMNTIRITLSSATNLDWDLQQFDVKNAFLHGD LEEELYMKIPPGFDDKKTKRKVCRLKKAVYGLKQSPKAWFNRLNKAIISFGYHQSNAD HTLFIKHGSDKITSLIVYVDDIVATGDDKEEIARLRKLLAPAFEIKDLGQL" mobile_element 19882721..19887510 /note="source:CACAO_hAT_E2862_scaffold_6 1 4790" /mobile_element_type="transposon:TIR/hAT" gene 19884359..19888006 /locus_tag="TCM_028997" /note="dbxref CacaoGD:Thecc1EG028997" mRNA join(19884359..19884600,19885536..19885836, 19886303..19886412,19886551..19886664,19887556..19887666, 19887780..19888006) /locus_tag="TCM_028997" /product="Uncharacterized protein" /note="quality class is strong-expresste, express is strong, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.75 coverage" CDS join(19884552..19884600,19885536..19885836, 19886303..19886412,19886551..19886664,19887556..19887666, 19887780..19887835) /locus_tag="TCM_028997" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27052.1" /translation="MSSLVWDHFTKFVDDKAVKFERAFASFEYYDSSYRSELVRNGDG VLDDNNWATVKRISLFLKEFYDMTVNVSSTSYVTANSFLDSISDVYGTLIEWQESDDV DLKSMAMKMKAKFDKSFLTPKIMQTLICAQDWLNGKARGDSEQLEDNLDELDLAKITL EPIRETDAGSDTDFDSNSEQRVILIDYFHFSGLLFSEHGHLKLEAFTDADWARSPDDR RSTSAYCTFVESNGRIAIVRREMSILIL" mobile_element complement(19887511..19888302) /note="source:CACAO_M_S_E66869_F40_scaffold_6 1 786" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(19895376..19906057) /locus_tag="TCM_028998" /note="dbxref CacaoGD:Thecc1EG028998" mRNA complement(join(19895376..19896374,19896475..19896525, 19897188..19897299,19897406..19897483,19897609..19899834, 19900481..19900569,19900650..19900718,19900850..19901208, 19901393..19901464,19901998..19902065,19903384..19903610, 19905321..19906057)) /locus_tag="TCM_028998" /product="Dentin sialophosphoprotein-related, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30146.m003424" /inference="similar to AA sequence:Phytozome:Glyma08g20920.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc605t8" mRNA complement(join(19895914..19896374,19896475..19896525, 19897188..19897299,19897406..19897483,19897609..19899834, 19900481..19900569,19900650..19900718,19900850..19901157, 19901393..19901464,19901998..19902065,19903384..19903610, 19905321..19905926)) /locus_tag="TCM_028998" /product="Dentin sialophosphoprotein-related, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30146.m003424" /inference="similar to AA sequence:ricco:30146.m003424" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc979t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc605t8; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc544t2" CDS complement(join(19896324..19896374,19896475..19896525, 19897188..19897299,19897406..19897483,19897609..19899834, 19900481..19900569,19900650..19900718,19900850..19901157, 19901393..19901464,19901998..19902065,19903384..19903610, 19905321..19905671)) /locus_tag="TCM_028998" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30146.m003424" /codon_start=1 /product="Dentin sialophosphoprotein-related, putative isoform 2" /protein_id="EOY27054.1" /db_xref="TAIR:AT3G21290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5APE0" /translation="MYGGSSKLGRGGGGGRGGGGPRNRSSFPPPPPHRPAAPAGRLSL GSAPRNRPGVGGGLGPAPAVEESFSLVSGNNPLAFAMIIRLAPDLVEEIRRLEAQGGT ARIKFDSIPTNPSGNVIDVGGKEFRFTWSREFVDLCDIYEERQSGEDGNGLLVESGCA WRKLNVQRVLDESMTNHVKMRSEEAERKHKSRKAIVLDHGNPSMKNQIKQLAAAEASP WKSHFKKKEPAFKKRKVETAQASNAKGGRSTSPIPSPPERSGAAASPIGIGNISKVHS GIEDVMPPQVKSKENASSSEKEIPTRATGAVREMPGRRGNFGPKPMDLQSLLITLLKE NPKGMSLKALEKAVGDTIPNSARKIETIVKKIATFQAPGRYFLKPGVELDSLKKPSSE SGSSPEDNHHQTPAPEENHDQTPAPVASIVEKVSEMEEQNHLDSKLGVESNVLEQIDI QQHSPDLGGDRKASDNSEGQANSASDSGSDSDSDSDSSDSGSDSGSRSRSRSRSGSPA GSGSGSSSDSESDASSNSKEGSDEDVDIMTSDDYKETKQDLQASEPGVVQSPIPWQTE HDRPLQNGMDENQDGDGSDAVDIEGNGSDAVDVEGHGSDGVDIEKDLPEDEQQIGMAV STRKEGEKPEEGAKPSSSDCDELQERQNFIGNLFDDAENLVKDSVRHEQSDNSERLPK AKSKRGSDLKHIDEKSERTKRSKSESLSQPHVSGSRDPNFFGSIRNFSPNRPIDDPYQ SSSVQMMNKGDREEHADFGSQKGYNQVFPRKSSSDFHQSGRRPSDQGAWAKATIAAER PMKHTESSGHGRKFSEKSVHEGHFIQKDNPSRDTQNEDGLMKDKKLPRNTKEGGAGGK NAVPSDFHHRKLGETVGKFKDAGQISSSYINSPPKDNSRVTADRYPVNGKSNMLQREL SHLELGEIREPLVEETPIKKQFERKSSFKQSGSGPSTSENFNPDLSRGKSVGKTNWDS GKPSPPNLSGLRRTPEYHVEDLTRSHLRVVQSQPQHLSRVDRPEVGSHSNKLADTSSK TRQNETGAKLGVDLEGYGESHKKAPASASQPQESKRGSVSQVIKDSKTLASNKMVDVT DGRKDTVLAEGNVNGRRKRGSSSDEECCPYSKYEKDEPEYRGPIKDSSQYEEYMNEFR EKYESYNDLDKTLQTYRNDFEKLGKDLEYSKDRDMDKYYKTLNLLLESYQQCGMRHKR LKKIFVVLHYELKNLKQRLHEYAQSHSID" CDS complement(join(19896324..19896374,19896475..19896525, 19897188..19897299,19897406..19897483,19897609..19899834, 19900481..19900569,19900650..19900718,19900850..19901208, 19901393..19901464,19901998..19902065,19903384..19903610, 19905321..19905671)) /locus_tag="TCM_028998" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Dentin sialophosphoprotein-related, putative isoform 1" /protein_id="EOY27053.1" /db_xref="Phytozome:Glyma08g20920.1" /db_xref="TAIR:AT3G21290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5APE0" /translation="MYGGSSKLGRGGGGGRGGGGPRNRSSFPPPPPHRPAAPAGRLSL GSAPRNRPGVGGGLGPAPAVEESFSLVSGNNPLAFAMIIRLAPDLVEEIRRLEAQGGT ARIKFDSIPTNPSGNVIDVGGKEFRFTWSREFVDLCDIYEERQSGEDGNGLLVESGCA WRKLNVQRVLDESMTNHVKMRSEEAERKHKSRKAIVLDHGNPSMKNQIKQLAAAEASP WKSHFKKKEPAFKKRKVETAQAAVGGPPKSGYKSGLISASNAKGGRSTSPIPSPPERS GAAASPIGIGNISKVHSGIEDVMPPQVKSKENASSSEKEIPTRATGAVREMPGRRGNF GPKPMDLQSLLITLLKENPKGMSLKALEKAVGDTIPNSARKIETIVKKIATFQAPGRY FLKPGVELDSLKKPSSESGSSPEDNHHQTPAPEENHDQTPAPVASIVEKVSEMEEQNH LDSKLGVESNVLEQIDIQQHSPDLGGDRKASDNSEGQANSASDSGSDSDSDSDSSDSG SDSGSRSRSRSRSGSPAGSGSGSSSDSESDASSNSKEGSDEDVDIMTSDDYKETKQDL QASEPGVVQSPIPWQTEHDRPLQNGMDENQDGDGSDAVDIEGNGSDAVDVEGHGSDGV DIEKDLPEDEQQIGMAVSTRKEGEKPEEGAKPSSSDCDELQERQNFIGNLFDDAENLV KDSVRHEQSDNSERLPKAKSKRGSDLKHIDEKSERTKRSKSESLSQPHVSGSRDPNFF GSIRNFSPNRPIDDPYQSSSVQMMNKGDREEHADFGSQKGYNQVFPRKSSSDFHQSGR RPSDQGAWAKATIAAERPMKHTESSGHGRKFSEKSVHEGHFIQKDNPSRDTQNEDGLM KDKKLPRNTKEGGAGGKNAVPSDFHHRKLGETVGKFKDAGQISSSYINSPPKDNSRVT ADRYPVNGKSNMLQRELSHLELGEIREPLVEETPIKKQFERKSSFKQSGSGPSTSENF NPDLSRGKSVGKTNWDSGKPSPPNLSGLRRTPEYHVEDLTRSHLRVVQSQPQHLSRVD RPEVGSHSNKLADTSSKTRQNETGAKLGVDLEGYGESHKKAPASASQPQESKRGSVSQ VIKDSKTLASNKMVDVTDGRKDTVLAEGNVNGRRKRGSSSDEECCPYSKYEKDEPEYR GPIKDSSQYEEYMNEFREKYESYNDLDKTLQTYRNDFEKLGKDLEYSKDRDMDKYYKT LNLLLESYQQCGMRHKRLKKIFVVLHYELKNLKQRLHEYAQSHSID" mRNA complement(join(19896497..19897299,19897406..19897483, 19897609..19899834,19900481..19900569,19900650..19900718, 19900850..19901208,19901393..19901464,19901998..19902065, 19903384..19903610,19905321..19905926)) /locus_tag="TCM_028998" /product="Dentin sialophosphoprotein-related, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004436" /inference="alignment:exonerate- protein:2:ricco:30146.m003424" /inference="similar to AA sequence:Phytozome:Glyma08g20920.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc605t6; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc605t8; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc544t2" mRNA complement(join(19896501..19897212,19897606..19899834, 19900481..19900569,19900650..19900718,19900850..19901208, 19901393..19901417)) /locus_tag="TCM_028998" /product="Dentin sialophosphoprotein-related, putative isoform 6" /inference="alignment:exonerate- protein:2:ricco:30146.m003424" /inference="similar to AA sequence:ricco:30146.m003424" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc544t6; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc544t2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc605t8" mRNA complement(join(19896539..19896563,19897188..19897299, 19897406..19897483,19897609..19899834,19900481..19900569, 19900650..19900718,19900850..19901208,19901393..19901464, 19901998..19902065,19903384..19903610,19905321..19905926)) /locus_tag="TCM_028998" /product="Dentin sialophosphoprotein-related, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004436" /inference="alignment:exonerate- protein:2:ricco:30146.m003424" /inference="similar to AA sequence:Phytozome:Glyma08g20920.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc593t2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc605t8; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc544t2" CDS complement(join(19896546..19896563,19897188..19897299, 19897406..19897483,19897609..19899834,19900481..19900569, 19900650..19900718,19900850..19901208,19901393..19901464, 19901998..19902065,19903384..19903610,19905321..19905671)) /locus_tag="TCM_028998" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Dentin sialophosphoprotein-related, putative isoform 3" /protein_id="EOY27055.1" /db_xref="Phytozome:Glyma08g20920.1" /db_xref="TAIR:AT3G21290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5APE0" /translation="MYGGSSKLGRGGGGGRGGGGPRNRSSFPPPPPHRPAAPAGRLSL GSAPRNRPGVGGGLGPAPAVEESFSLVSGNNPLAFAMIIRLAPDLVEEIRRLEAQGGT ARIKFDSIPTNPSGNVIDVGGKEFRFTWSREFVDLCDIYEERQSGEDGNGLLVESGCA WRKLNVQRVLDESMTNHVKMRSEEAERKHKSRKAIVLDHGNPSMKNQIKQLAAAEASP WKSHFKKKEPAFKKRKVETAQAAVGGPPKSGYKSGLISASNAKGGRSTSPIPSPPERS GAAASPIGIGNISKVHSGIEDVMPPQVKSKENASSSEKEIPTRATGAVREMPGRRGNF GPKPMDLQSLLITLLKENPKGMSLKALEKAVGDTIPNSARKIETIVKKIATFQAPGRY FLKPGVELDSLKKPSSESGSSPEDNHHQTPAPEENHDQTPAPVASIVEKVSEMEEQNH LDSKLGVESNVLEQIDIQQHSPDLGGDRKASDNSEGQANSASDSGSDSDSDSDSSDSG SDSGSRSRSRSRSGSPAGSGSGSSSDSESDASSNSKEGSDEDVDIMTSDDYKETKQDL QASEPGVVQSPIPWQTEHDRPLQNGMDENQDGDGSDAVDIEGNGSDAVDVEGHGSDGV DIEKDLPEDEQQIGMAVSTRKEGEKPEEGAKPSSSDCDELQERQNFIGNLFDDAENLV KDSVRHEQSDNSERLPKAKSKRGSDLKHIDEKSERTKRSKSESLSQPHVSGSRDPNFF GSIRNFSPNRPIDDPYQSSSVQMMNKGDREEHADFGSQKGYNQVFPRKSSSDFHQSGR RPSDQGAWAKATIAAERPMKHTESSGHGRKFSEKSVHEGHFIQKDNPSRDTQNEDGLM KDKKLPRNTKEGGAGGKNAVPSDFHHRKLGETVGKFKDAGQISSSYINSPPKDNSRVT ADRYPVNGKSNMLQRELSHLELGEIREPLVEETPIKKQFERKSSFKQSGSGPSTSENF NPDLSRGKSVGKTNWDSGKPSPPNLSGLRRTPEYHVEDLTRSHLRVVQSQPQHLSRVD RPEVGSHSNKLADTSSKTRQNETGAKLGVDLEGYGESHKKAPASASQPQESKRGSVSQ VIKDSKTLASNKMVDVTDGRKDTVLAEGNVNGRRKRGSSSDEECCPYSKYEKDEPEYR GPIKDSSQYEEYMNEFREKYESYNDLDKTLQTYRNDFEKLGKDLEYSKDRDMDKYYKT LNLLLESYQQCGMEFCSD" mRNA complement(join(19896925..19896949,19897188..19897299, 19897406..19897483,19897609..19899834,19900481..19900569, 19900650..19900718,19900850..19901208,19901393..19901417)) /locus_tag="TCM_028998" /product="Dentin sialophosphoprotein-related, putative isoform 5" /inference="alignment:exonerate- protein:2:ricco:30146.m003424" /inference="similar to AA sequence:ricco:30146.m003424" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc544t2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc544t2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc605t8" CDS complement(join(19896947..19896949,19897188..19897299, 19897406..19897483,19897609..19899834,19900481..19900569, 19900650..19900718,19900850..19901032)) /locus_tag="TCM_028998" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30146.m003424" /codon_start=1 /product="Dentin sialophosphoprotein-related, putative isoform 5" /protein_id="EOY27057.1" /db_xref="TAIR:AT3G21290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5APE0" /translation="MPPQVKSKENASSSEKEIPTRATGAVREMPGRRGNFGPKPMDLQ SLLITLLKENPKGMSLKALEKAVGDTIPNSARKIETIVKKIATFQAPGRYFLKPGVEL DSLKKPSSESGSSPEDNHHQTPAPEENHDQTPAPVASIVEKVSEMEEQNHLDSKLGVE SNVLEQIDIQQHSPDLGGDRKASDNSEGQANSASDSGSDSDSDSDSSDSGSDSGSRSR SRSRSGSPAGSGSGSSSDSESDASSNSKEGSDEDVDIMTSDDYKETKQDLQASEPGVV QSPIPWQTEHDRPLQNGMDENQDGDGSDAVDIEGNGSDAVDVEGHGSDGVDIEKDLPE DEQQIGMAVSTRKEGEKPEEGAKPSSSDCDELQERQNFIGNLFDDAENLVKDSVRHEQ SDNSERLPKAKSKRGSDLKHIDEKSERTKRSKSESLSQPHVSGSRDPNFFGSIRNFSP NRPIDDPYQSSSVQMMNKGDREEHADFGSQKGYNQVFPRKSSSDFHQSGRRPSDQGAW AKATIAAERPMKHTESSGHGRKFSEKSVHEGHFIQKDNPSRDTQNEDGLMKDKKLPRN TKEGGAGGKNAVPSDFHHRKLGETVGKFKDAGQISSSYINSPPKDNSRVTADRYPVNG KSNMLQRELSHLELGEIREPLVEETPIKKQFERKSSFKQSGSGPSTSENFNPDLSRGK SVGKTNWDSGKPSPPNLSGLRRTPEYHVEDLTRSHLRVVQSQPQHLSRVDRPEVGSHS NKLADTSSKTRQNETGAKLGVDLEGYGESHKKAPASASQPQESKRGSVSQVIKDSKTL ASNKMVDVTDGRKDTVLAEGNVNGRRKRGSSSDEECCPYSKYEKDEPEYRGPIKDSSQ YEEYMNEFREKYESYNDLDKTLQTYRNDFEKLGKDLEYSKDRDMDKYYKTLNLLLESY QQCGM" CDS complement(join(19897170..19897299,19897406..19897483, 19897609..19899834,19900481..19900569,19900650..19900718, 19900850..19901208,19901393..19901464,19901998..19902065, 19903384..19903610,19905321..19905671)) /locus_tag="TCM_028998" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Dentin sialophosphoprotein-related, putative isoform 4" /protein_id="EOY27056.1" /db_xref="Phytozome:Glyma08g20920.1" /db_xref="TAIR:AT3G21290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5APE0" /translation="MYGGSSKLGRGGGGGRGGGGPRNRSSFPPPPPHRPAAPAGRLSL GSAPRNRPGVGGGLGPAPAVEESFSLVSGNNPLAFAMIIRLAPDLVEEIRRLEAQGGT ARIKFDSIPTNPSGNVIDVGGKEFRFTWSREFVDLCDIYEERQSGEDGNGLLVESGCA WRKLNVQRVLDESMTNHVKMRSEEAERKHKSRKAIVLDHGNPSMKNQIKQLAAAEASP WKSHFKKKEPAFKKRKVETAQAAVGGPPKSGYKSGLISASNAKGGRSTSPIPSPPERS GAAASPIGIGNISKVHSGIEDVMPPQVKSKENASSSEKEIPTRATGAVREMPGRRGNF GPKPMDLQSLLITLLKENPKGMSLKALEKAVGDTIPNSARKIETIVKKIATFQAPGRY FLKPGVELDSLKKPSSESGSSPEDNHHQTPAPEENHDQTPAPVASIVEKVSEMEEQNH LDSKLGVESNVLEQIDIQQHSPDLGGDRKASDNSEGQANSASDSGSDSDSDSDSSDSG SDSGSRSRSRSRSGSPAGSGSGSSSDSESDASSNSKEGSDEDVDIMTSDDYKETKQDL QASEPGVVQSPIPWQTEHDRPLQNGMDENQDGDGSDAVDIEGNGSDAVDVEGHGSDGV DIEKDLPEDEQQIGMAVSTRKEGEKPEEGAKPSSSDCDELQERQNFIGNLFDDAENLV KDSVRHEQSDNSERLPKAKSKRGSDLKHIDEKSERTKRSKSESLSQPHVSGSRDPNFF GSIRNFSPNRPIDDPYQSSSVQMMNKGDREEHADFGSQKGYNQVFPRKSSSDFHQSGR RPSDQGAWAKATIAAERPMKHTESSGHGRKFSEKSVHEGHFIQKDNPSRDTQNEDGLM KDKKLPRNTKEGGAGGKNAVPSDFHHRKLGETVGKFKDAGQISSSYINSPPKDNSRVT ADRYPVNGKSNMLQRELSHLELGEIREPLVEETPIKKQFERKSSFKQSGSGPSTSENF NPDLSRGKSVGKTNWDSGKPSPPNLSGLRRTPEYHVEDLTRSHLRVVQSQPQHLSRVD RPEVGSHSNKLADTSSKTRQNETGAKLGVDLEGYGESHKKAPASASQPQESKRGSVSQ VIKDSKTLASNKMVDVTDGRKDTVLAEGNVNGRRKRGSSSDEECCPYSKYEKDEPEYR GPIKDSSQYEEYMNEFREKYESYNDLDKTLQTYRNDFEKLGKDLEYSKDRDMDKYYKT LNLLLESYQQCGMVYFSI" CDS complement(join(19897212,19897606..19899834, 19900481..19900569,19900650..19900718,19900850..19901032)) /locus_tag="TCM_028998" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:30146.m003424" /codon_start=1 /product="Dentin sialophosphoprotein-related, putative isoform 6" /protein_id="EOY27058.1" /db_xref="TAIR:AT3G21290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5APE0" /translation="MPPQVKSKENASSSEKEIPTRATGAVREMPGRRGNFGPKPMDLQ SLLITLLKENPKGMSLKALEKAVGDTIPNSARKIETIVKKIATFQAPGRYFLKPGVEL DSLKKPSSESGSSPEDNHHQTPAPEENHDQTPAPVASIVEKVSEMEEQNHLDSKLGVE SNVLEQIDIQQHSPDLGGDRKASDNSEGQANSASDSGSDSDSDSDSSDSGSDSGSRSR SRSRSGSPAGSGSGSSSDSESDASSNSKEGSDEDVDIMTSDDYKETKQDLQASEPGVV QSPIPWQTEHDRPLQNGMDENQDGDGSDAVDIEGNGSDAVDVEGHGSDGVDIEKDLPE DEQQIGMAVSTRKEGEKPEEGAKPSSSDCDELQERQNFIGNLFDDAENLVKDSVRHEQ SDNSERLPKAKSKRGSDLKHIDEKSERTKRSKSESLSQPHVSGSRDPNFFGSIRNFSP NRPIDDPYQSSSVQMMNKGDREEHADFGSQKGYNQVFPRKSSSDFHQSGRRPSDQGAW AKATIAAERPMKHTESSGHGRKFSEKSVHEGHFIQKDNPSRDTQNEDGLMKDKKLPRN TKEGGAGGKNAVPSDFHHRKLGETVGKFKDAGQISSSYINSPPKDNSRVTADRYPVNG KSNMLQRELSHLELGEIREPLVEETPIKKQFERKSSFKQSGSGPSTSENFNPDLSRGK SVGKTNWDSGKPSPPNLSGLRRTPEYHVEDLTRSHLRVVQSQPQHLSRVDRPEVGSHS NKLADTSSKTRQNETGAKLGVDLEGYGESHKKAPASASQPQESKRGSVSQVIKDSKTL ASNKMVDVTDGRKDTVLAEGNVNGRRKRGSSSDEECCPYSKYEKDEPEYRGPIKDSSQ " gene 19907077..19914822 /locus_tag="TCM_028999" /note="dbxref CacaoGD:Thecc1EG028999" mRNA join(19907077..19907211,19908076..19908221, 19908371..19908406,19908511..19908618,19910290..19910390, 19910500..19910626,19911066..19911125,19911213..19911280, 19911550..19911600,19912109..19912217,19912625..19912713, 19912893..19912962,19913154..19913234,19913320..19913415, 19913502..19913550,19913932..19914051,19914148..19914222, 19914398..19914822) /locus_tag="TCM_028999" /product="Ubiquitin-specific protease 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016888001" /inference="similar to AA sequence:Phytozome:GSVIVT01016888001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12190t00001" CDS join(19907202..19907211,19908076..19908221, 19908371..19908406,19908511..19908618,19910290..19910390, 19910500..19910626,19911066..19911125,19911213..19911280, 19911550..19911600,19912109..19912217,19912625..19912713, 19912893..19912962,19913154..19913234,19913320..19913415, 19913502..19913550,19913932..19914051,19914148..19914222, 19914398..19914453) /locus_tag="TCM_028999" /codon_start=1 /product="Ubiquitin-specific protease 6" /protein_id="EOY27059.1" /db_xref="Phytozome:GSVIVT01016888001" /db_xref="TAIR:AT1G51710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84WC6" /translation="MLTVSVKWQKEVFKAVEIDTSQPPYVFKCQLFDLTGVPPERQKI MVKGGLLKDDADWSTVGVKQGQKLMMVGTADEIVKAPEKGPVFMEDLPEEEQVVSLGH SAGLFNLGNTCYMNSTVQCLHSVPELKSALVKYSHSGRSNDLDQTSHMLTVATRDLFS ELDKSVKPVAPMQFWMVLRKKYPQFGQLHNGVFMQQDAEECWTQLLYTLSQSLRSPGS SENLDTVKDLFGIELASRIHCQESGEESSETESVYSLKCHISQEVNHLHEGLKHGLKS ELEKASPALGRSAIYLKESRINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLELD VYDLCSDELRKQLEGPRQILRDEEGKKLGLKANEKSSGTKDDDVKMTDAEGSSNASGE SSATTPQEGVLSDKESCLTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIEFDDDN PIPQREEDIVKLSGGGDWHMAYICMYKARSIAM" gene complement(19914992..19916943) /locus_tag="TCM_029000" /note="dbxref CacaoGD:Thecc1EG029000" mRNA complement(join(19914992..19915510,19915749..19916384, 19916467..19916943)) /locus_tag="TCM_029000" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.64 coverage" CDS complement(join(19915217..19915510,19915749..19915790)) /locus_tag="TCM_029000" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27060.1" /translation="MLIKVEIESDYVILCRFYEKEWNGECVARWPRRVFVLLFGHPRP KVRDMTLLPSPQLMQSASWKTKWGAVIHHSGSSPHCTATLPLKQNCRFKIEVKELPAP GPGRHVTSN" mobile_element 19915642..19915735 /note="source:scaffold_8_CACTA_0855 2493 2599" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19917541..19917597) /note="source:CACAO_PIF_E144_scaffold_10 5997 6053" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(19917778..19919252) /locus_tag="TCM_029001" /note="dbxref CacaoGD:Thecc1EG029001" mRNA complement(join(19917778..19918917,19919125..19919252)) /locus_tag="TCM_029001" /product="DOF zinc finger protein 1, putative" /inference="alignment:exonerate- protein:2:ricco:27395.m000081" /inference="similar to AA sequence:Phytozome:POPTR_0003s02890.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01969t00002" CDS complement(19917840..19918601) /locus_tag="TCM_029001" /codon_start=1 /product="DOF zinc finger protein 1, putative" /protein_id="EOY27061.1" /db_xref="Phytozome:POPTR_0003s02890.1" /db_xref="TAIR:AT1G51700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MWQ5" /translation="MQDPTGFQQMKAPAFPEQEQLKCPRCDSTNTKFCYYNNYNLSQP RHFCKNCRRYWTKGGALRNIPVGGGTRKNTKRSSSSSSSSSTNNPKRQPNPAPDPSRN PKLPDPSPPPTSSSTIPQQVVLNSGVRNSGSEGDPTRMYVWSVDHQDRKMMDIGGSFS SLLSSSGQFGNLLEGLNPNGPGLKTVQMGEFVGNLDSGLGMNQGPSRDPGLGESNNNG ESYLGVQGGGDTSCWTGGSNGWPDLAIYTPGSSFQ" gene complement(19924144..19927399) /locus_tag="TCM_029002" /note="dbxref CacaoGD:Thecc1EG029002" mRNA complement(join(19924144..19924616,19924934..19925038, 19926423..19926637,19927086..19927252)) /locus_tag="TCM_029002" /product="Mitochondrial ATP synthase subunit G protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01035352001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037267t1" /inference="similar to AA sequence:Phytozome:GSVIVT01035352001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1499t1" mRNA complement(join(19924353..19924616,19926423..19926637, 19927086..19927399)) /locus_tag="TCM_029002" /product="Mitochondrial ATP synthase subunit G protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01035352001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037705t1" /inference="similar to AA sequence:Phytozome:GSVIVT01035352001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc2030t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1499t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1533t2" CDS complement(join(19924430..19924616,19926423..19926595)) /locus_tag="TCM_029002" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037705t1" /codon_start=1 /product="Mitochondrial ATP synthase subunit G protein isoform 2" /protein_id="EOY27063.1" /db_xref="Phytozome:GSVIVT01035352001" /db_xref="TAIR:AT4G29480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0JLH6" /translation="MASKLQTKAAQVSQFVTKNGSSYYKELMERNNQYIQKPSSAHTC QLLAKQLFYTRLASIPRRYEALWKELDSLKQFLKTKDAWSMENASVAALFGVECYAWS WGGEIIGRGFTLTGYYV" CDS complement(join(19924430..19924616,19924934..19925038, 19926423..19926595)) /locus_tag="TCM_029002" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037267t1" /codon_start=1 /product="Mitochondrial ATP synthase subunit G protein, putative isoform 1" /protein_id="EOY27062.1" /db_xref="Phytozome:GSVIVT01035352001" /db_xref="TAIR:AT4G29480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0JLH6" /translation="MASKLQTKAAQVSQFVTKNGSSYYKELMERNNQYIQKPSSAHTC QLLAKQLFYTRLARTGTCGIQSVKAQLLGKGLKLSYMGGKRFLNLAEFSIPRRYEALW KELDSLKQFLKTKDAWSMENASVAALFGVECYAWSWGGEIIGRGFTLTGYYV" mobile_element 19925513..19925598 /note="source:CACAO_M_E57639_F345_scaffold_9 1375 1455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19925518..19925633) /note="source:CACAO_M_E43428_F369_scaffold_5 1273 1342" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19927760..19936595) /locus_tag="TCM_029003" /note="dbxref CacaoGD:Thecc1EG029003" mRNA complement(join(19927760..19928582,19928742..19928809, 19928887..19928964,19929054..19929145,19929237..19929305, 19929942..19930065,19930215..19930338,19930561..19930679, 19931783..19931874,19932513..19932719,19933086..19933205, 19933312..19933410,19933504..19933607,19935670..19936403)) /locus_tag="TCM_029003" /product="Phosphatase 2A, regulatory subunit PR55, BETA isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g02640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037270t1" /inference="similar to AA sequence:Phytozome:Glyma13g42800.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4648t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4648t4" mRNA complement(join(19927760..19928582,19928741..19928809, 19928887..19928967,19929054..19929145,19929237..19929305, 19929942..19930065,19930215..19930338,19930561..19930679, 19931783..19931874,19932513..19932719,19933086..19933205, 19933312..19933410,19933504..19933607,19935670..19936403)) /locus_tag="TCM_029003" /product="Phosphatase 2A, regulatory subunit PR55, BETA isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g02640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037270t1" /inference="similar to AA sequence:Phytozome:Glyma13g42800.2" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4648t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4648t4" mRNA complement(join(19927894..19928582,19928742..19928809, 19928887..19928964,19929054..19929145,19929237..19929305, 19929942..19930065,19930215..19930338,19930561..19930679, 19931783..19931874,19932510..19932719,19933086..19933205, 19933312..19933410,19933504..19933607,19935670..19936388)) /locus_tag="TCM_029003" /product="Phosphatase 2A, regulatory subunit PR55, BETA isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g02640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037270t1" /inference="similar to AA sequence:Phytozome:Glyma13g42800.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4648t4" mRNA complement(join(19928404..19928582,19928742..19928809, 19928887..19928964,19929054..19929145,19929237..19929305, 19929942..19930065,19930215..19930338,19930561..19930679, 19931783..19931874,19932516..19932719,19933086..19933205, 19933312..19933410,19933504..19933607,19935670..19936595)) /locus_tag="TCM_029003" /product="Phosphatase 2A, regulatory subunit PR55, BETA isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g02640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037270t1" /inference="similar to AA sequence:Phytozome:Glyma13g42800.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc525t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4648t4" CDS complement(join(19928446..19928582,19928742..19928809, 19928887..19928964,19929054..19929145,19929237..19929305, 19929942..19930065,19930215..19930338,19930561..19930679, 19931783..19931874,19932516..19932719,19933086..19933205, 19933312..19933410,19933504..19933607,19935670..19935781)) /locus_tag="TCM_029003" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG037270t1" /codon_start=1 /product="Phosphatase 2A, regulatory subunit PR55, BETA isoform 3" /protein_id="EOY27066.1" /db_xref="Phytozome:Glyma13g42800.2" /db_xref="TAIR:AT1G17720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39247" /translation="MNGGDEVVAAPAGPPQPLDWKFSQVFGERTAGEEVQEVDIISAI EFDKTGDHLATGDRGGRVVLFERTDTKDHGVPRRDLERIDYPISRHPEFRYKTEFQSH EPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKISDMNLD PSKAVGNGSIASSSNSCSPKPCVANGGSPDRSYNYLGNDFSFPPGGIASLRLPVTSLE TNLMARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKP ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHTKLFEEPEAPGS RSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPRLCD LYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVQ TPSRPSRSLSSITRVVRRGAEAPGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSL YMYYA" CDS complement(join(19928446..19928582,19928742..19928809, 19928887..19928964,19929054..19929145,19929237..19929305, 19929942..19930065,19930215..19930338,19930561..19930679, 19931783..19931874,19932513..19932719,19933086..19933205, 19933312..19933410,19933504..19933607,19935670..19935781)) /locus_tag="TCM_029003" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037270t1" /codon_start=1 /product="Phosphatase 2A, regulatory subunit PR55, BETA isoform 2" /protein_id="EOY27065.1" /db_xref="Phytozome:Glyma13g42800.2" /db_xref="TAIR:AT1G17720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39247" /translation="MNGGDEVVAAPAGPPQPLDWKFSQVFGERTAGEEVQEVDIISAI EFDKTGDHLATGDRGGRVVLFERTDTKDHGVPRRDLERIDYPISRHPEFRYKTEFQSH EPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKISDMNLD PSKAVGNGSIASSSNSCSPKPCVANGGSPDRSYNYLGNDFSFPPGGIASLRLPVVTSL ETNLMARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVK PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHTKLFEEPEAPG SRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPRLC DLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQV QTPSRPSRSLSSITRVVRRGAEAPGVDANGNSFDFTTKLLHLAWHPTENSIACAAANS LYMYYA" CDS complement(join(19928446..19928582,19928742..19928809, 19928887..19928964,19929054..19929145,19929237..19929305, 19929942..19930065,19930215..19930338,19930561..19930679, 19931783..19931874,19932510..19932719,19933086..19933205, 19933312..19933410,19933504..19933607,19935670..19935781)) /locus_tag="TCM_029003" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037270t1" /codon_start=1 /product="Phosphatase 2A, regulatory subunit PR55, BETA isoform 1" /protein_id="EOY27064.1" /db_xref="Phytozome:Glyma13g42800.1" /db_xref="TAIR:AT1G17720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39247" /translation="MNGGDEVVAAPAGPPQPLDWKFSQVFGERTAGEEVQEVDIISAI EFDKTGDHLATGDRGGRVVLFERTDTKDHGVPRRDLERIDYPISRHPEFRYKTEFQSH EPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKISDMNLD PSKAVGNGSIASSSNSCSPKPCVANGGSPDRSYNYLGNDFSFPPGGIASLRLPVVVTS LETNLMARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHTKLFEEPEAP GSRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPRL CDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQ VQTPSRPSRSLSSITRVVRRGAEAPGVDANGNSFDFTTKLLHLAWHPTENSIACAAAN SLYMYYA" CDS complement(join(19928561..19928582,19928741..19928809, 19928887..19928967,19929054..19929145,19929237..19929305, 19929942..19930065,19930215..19930338,19930561..19930679, 19931783..19931874,19932513..19932719,19933086..19933205, 19933312..19933410,19933504..19933607,19935670..19935781)) /locus_tag="TCM_029003" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG037270t1" /codon_start=1 /product="Phosphatase 2A, regulatory subunit PR55, BETA isoform 4" /protein_id="EOY27067.1" /db_xref="Phytozome:Glyma13g42800.2" /db_xref="TAIR:AT1G17720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39247" /translation="MNGGDEVVAAPAGPPQPLDWKFSQVFGERTAGEEVQEVDIISAI EFDKTGDHLATGDRGGRVVLFERTDTKDHGVPRRDLERIDYPISRHPEFRYKTEFQSH EPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKISDMNLD PSKAVGNGSIASSSNSCSPKPCVANGGSPDRSYNYLGNDFSFPPGGIASLRLPVVTSL ETNLMARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVK PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHTKLFEEPEAPG SRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPRLC DLYENDSIFDKFECCLSGDGLRVATGSYSSNLFRVFGCAPGSTEATTLEASKNPMRRQ VQTPSRPSRSLSSITRVVRRGSRSPWS" mobile_element complement(19938979..19939367) /note="source:CACAO_on_E279_scaffold_9 8033 8440" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(19939449..19939661) /note="source:CACAO_on_E279_scaffold_9 7 219" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(19939747..19940097) /note="source:CACAO_on_E279_scaffold_9 8083 8446" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 19941982..19943596 /locus_tag="TCM_029004" /note="dbxref CacaoGD:Thecc1EG029004" mRNA join(19941982..19942926,19943010..19943596) /locus_tag="TCM_029004" /product="F-box family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s01350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028415t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01360.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(19942158..19942926,19943010..19943299) /locus_tag="TCM_029004" /note="paralog of Thecc1EG028415t1" /codon_start=1 /product="F-box family protein" /protein_id="EOY27068.1" /db_xref="Phytozome:POPTR_0006s01360.1" /db_xref="TAIR:AT4G12560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCS6" /translation="MSPFPSDLITDILCRLPVKTLLRFRCVSKPWGSLIDDSDFVKLH LHQSLKTNTNVKLFLDNCVENNSKAYAVDFDSLCNLVQFPRPFTAEANKYQSRIFGSC NGLLAVYHRQKGIALWNPSTRKCHYLPTLSDDINMDPDILLGCGYDKNTILGFGYDVS GNDYKVVNMLRSKTQNCFKVMVYSLKANSWKRIKDCPCDIFTNYNDGACVNGSLHWVE DEIGEFFGGKVIFALDFGTEEYYEVLEVDISFRQKKCGVEDHINLWVMKEYGAKESWI ELLYLSRDEWLTNIFHSRAVAYSKSDEKILLDEGRGCQPVWFNLENETRETLCIPGAP RCQRFSTMIYVESLVSVY" gene 19947559..19949645 /locus_tag="TCM_029005" /note="dbxref CacaoGD:Thecc1EG029005" mRNA join(19947559..19947807,19947899..19948020, 19948112..19948313,19948747..19949645) /locus_tag="TCM_029005" /product="Pyridoxal phosphate phosphatase-related protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016883001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029026t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s20130.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01367t00001" CDS join(19947670..19947807,19947899..19948020, 19948112..19948313,19948747..19949109) /locus_tag="TCM_029005" /note="paralog of Thecc1EG029026t1" /codon_start=1 /product="Pyridoxal phosphate phosphatase-related protein" /protein_id="EOY27069.1" /db_xref="Phytozome:POPTR_0008s20130.1" /db_xref="TAIR:AT1G17710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZ62" /translation="MAGIVVVFDFDKTIIDCDSDNWVVDELGFTDLFNQLLPTMPWNS LMDRMMKELHARGKTIDDIAEVLKRTPLHPRIVPAIKAANALGCELRIVSDANLFFIE TILEHLGLKEYFSEINTNPGFVDGEGRLRIFPYHDFTKCSHGCNLCPPNMCKGMVIER IQASLEGKKKIIYLGDGSGDYCPSLKLGEADYMMPRKNFPVWDLICRNPMLIKAEIHE WSDGEELERLLLQIINIISVEENNGSSAQLISVDCKLQTISASTHEALPQALPVPQ" gene 19952304..19953551 /locus_tag="TCM_029006" /note="dbxref CacaoGD:Thecc1EG029006" mRNA join(19952304..19952428,19952528..19952732, 19952988..19953551) /locus_tag="TCM_029006" /product="Inorganic pyrophosphatase 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029026t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s20130.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4560t1" CDS join(19952313..19952428,19952528..19952732, 19952988..19953365) /locus_tag="TCM_029006" /note="paralog of Thecc1EG029026t1" /codon_start=1 /product="Inorganic pyrophosphatase 2" /protein_id="EOY27070.1" /db_xref="Phytozome:POPTR_0008s20130.1" /db_xref="TAIR:AT1G17710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZ62" /translation="MMKELHSQGTKIEDIKAVLKRTPIHPRIIQAIKSAYALGCDLKI VSDANAFFIETILKHHGLREYFSEINTNPGFVDEEGRLRIFPHHDFTQSPHGCHHPCP PNMCKGTVIERIQASMSTEGKKTIIYLGDGVGDFCPSLKLGDGDYVMPRKNFPVWDLI CENRRLIKAEVCEWSNGDEFEHVLLHLISRISIDRNNSGNSTAQLYSVDCKPQTMPGA AHEKPFFHALYVPH" gene 19954152..19955557 /locus_tag="TCM_029007" /note="dbxref CacaoGD:Thecc1EG029007" mRNA join(19954152..19954543,19955172..19955557) /locus_tag="TCM_029007" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage" CDS join(19954224..19954543,19955172..19955382) /locus_tag="TCM_029007" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27071.1" /translation="MCVSLIWKLASNENEKKENWKYSGSGHRDVFHAFVMVLLEALVW LRHVHLENVFNRDRREYDDRQPQSTCLGGSSSRILHSRSLPGCLHIASAASMGNRSSL LDKISQIRHSTVRSRRRKHRIWCFPTRSHGWIWHSTARSSRGEAPIWRHSGQIRPDGA PDRRFVTSVAFPAIDP" gene 19955987..19962426 /locus_tag="TCM_029008" /note="dbxref CacaoGD:Thecc1EG029008" mRNA join(19955987..19956466,19956987..19957252, 19958248..19958427,19958523..19958684,19958880..19959034, 19959580..19959672,19959950..19960035,19960140..19960366, 19961455..19961688,19962147..19962426) /locus_tag="TCM_029008" /product="DEA(D/H)-box RNA helicase family protein" /inference="alignment:exonerate- protein:2:ricco:28694.m000678" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012168t1" /inference="similar to AA sequence:ricco:28694.m000678" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc135t9" CDS join(19956411..19956466,19956987..19957252, 19958248..19958427,19958523..19958684,19958880..19959034, 19959580..19959672,19959950..19960035,19960140..19960366, 19961455..19961688,19962147..19962205) /locus_tag="TCM_029008" /note="dbxref ricco:28694.m000678; paralog of Thecc1EG012168t1" /codon_start=1 /product="DEA(D/H)-box RNA helicase family protein" /protein_id="EOY27072.1" /db_xref="TAIR:AT1G55150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C718" /translation="MSRYDSRSGDPTSYRDRRSDSGFGGASAYGGSMRSSSSRRDYDG AEPPRKLDLDGLTPFEKNFYVESPLVAAMSATEVEEYRQRREITVEGRDVPKPVKSFR DMGFPEYVLQEITKAGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVH VNAQPILAPGDGPIVLVLAPTRELAVQIQQEAAKFGASSRIKNTCIYGGVPKGPQVRD LQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP DRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSADLKANHAIRQHVDIVPESQKYSKL VKLLEDIMDGSRILIFMDTKKGCDQITRRLRMDGWPALSIHGDKSQAERDWVLSEFKA GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA ANARFAKELIVILEEAGQKVSPELAAMGRGAPPPPSGHGGFRDRGRGYGSSRPRS" gene 19963465..19968998 /locus_tag="TCM_029009" /note="dbxref CacaoGD:Thecc1EG029009" mRNA join(19963465..19963580,19963769..19963966, 19968507..19968998) /locus_tag="TCM_029009" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s20740.2" /inference="similar to AA sequence:ricco:28694.m000679" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08226t00001" CDS join(19963538..19963580,19963769..19963966, 19968507..19968829) /locus_tag="TCM_029009" /note="dbxref ricco:28694.m000679" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27073.1" /db_xref="TAIR:AT1G55160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N194" /translation="MSEGPKLYTNKPKKAQLKQFQEQQKGKDFAPTSSAAAASYTMGS QTATNPPPPPQPPKESFARRYKFLWPLLLAVNLTVGAYLFMRTKKKDTSITEEDVARD VGATPVSTTTVTAPPVTEKPLPSPSITQPVKLVEPIPESQQRELFKHILEEKRKIKPK DPEEKKRLDEEKAILKQYIRAESIPRI" gene 19970532..19977073 /locus_tag="TCM_029010" /note="dbxref CacaoGD:Thecc1EG029010" mRNA join(19970532..19970882,19970990..19971039, 19972698..19973022,19973548..19973697,19973789..19974034, 19974656..19974745,19974884..19975069,19975230..19975354, 19976329..19977073) /locus_tag="TCM_029010" /product="Cytochrome P450, putative" /inference="alignment:exonerate- protein:2:ricco:28694.m000680" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000287t1" /inference="similar to AA sequence:ricco:28694.m000680" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1169t1_C2" CDS join(19970793..19970882,19970990..19971039, 19972698..19973022,19973548..19973697,19973789..19974034, 19974656..19974745,19974884..19975069,19975230..19975354, 19976329..19976422) /locus_tag="TCM_029010" /note="dbxref ricco:28694.m000680; paralog of Thecc1EG000287t1" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY27074.1" /db_xref="TAIR:AT3G13730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SN45" /translation="MKARGQPAAAATLHLPREEGLAWTPLIKPTGISFTAIFILFSFL SPWYGKVFKSHIFGTPTIVSTDAEVSRFVLQSDAKAFVPFYPKSLTELMGNSSILLIN GSLQRKIHGLIGSFFKSPHLKDQITRDMQNYVQQSMDKWRDDQPIYIQDETKNIAFQV LVKALISLNPGEEMELLKKQFQEFILGLMSLPVKVPGSQLYRSLQAKERMVKIVHKII QSKRNSGISTVAKDVVDVLLKDASELLTDDLIADNMIDMMIPGEDSVPVLMTLAIKYL SDCPAALHQLTEENMKLKKVKAQNGEPLIWSDYLSLPLTQSVITETLRMGNIIIGVMR KAMKDIEIKGYLIPKGWCFFAYFRSVHLDENHYDWPYQFNPWRWQDKDVISSYNFTPF GGGQRLCPGLDLARLEASIFLHHFVTTFRWVAEDDTIVNFPTVRMKKRMPIWVKRRED S" mobile_element complement(19972329..19972387) /note="source:INTACT296_F13_scaffold_9-int 13169 13227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19975108..19975155) /note="source:CACAO_M_E69306_F123_scaffold_9 4934 4981" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19978409..19978670) /note="source:scaffold_9_CACTA_0934 14615 14880" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19979075..19979688) /note="source:scaffold_9_CACTA_0934 13841 14620" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19979687..19982133 /note="source:CACAO_M_E69306_F123_scaffold_9 3756 6187" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19982134..19982172) /note="source:scaffold_9_CACTA_0934 10294 10332" /mobile_element_type="transposon:TIR/CACTA" gene complement(19983003..>19985912) /locus_tag="TCM_029011" /note="dbxref CacaoGD:Thecc1EG029011" mRNA complement(join(19983003..19983400,19984361..19985066, 19985756..>19985912)) /locus_tag="TCM_029011" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028461t1" /note="quality class is weakpartial-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_partial5" CDS complement(join(19984927..19985066,19985756..>19985912)) /locus_tag="TCM_029011" /note="paralog of Thecc1EG028461t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27075.1" /translation="NTIFDNGCSQGNRETDSKALRDFGLTFRTISVYRDTAAVVTGSR GVPGRDTKCIAIENGERTSFWDKEWIESHILMHSFPRIYALACKKEGKVANFRL" mobile_element complement(19985753..19986966) /note="source:scaffold_3_CACTA_0382 8396 9609" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19987067..19988044) /note="source:CACAO_M_E12297_F14_scaffold_3 7106 8083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20010935..20011048 /note="source:scaffold_6_CACTA_0700 10633 10745" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20011033..20011152 /note="source:CACAO_M_E11307_F106_scaffold_2 1261 1373" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20011034..20011720) /note="source:CACAO_M_E11167_F106_scaffold_2 1 773" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(20012417..20014747) /locus_tag="TCM_029012" /note="dbxref CacaoGD:Thecc1EG029012" mRNA complement(join(20012417..20013017,20013467..20013625, 20014154..20014747)) /locus_tag="TCM_029012" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(20012665..20013017,20013467..20013625, 20014154..20014595)) /locus_tag="TCM_029012" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27076.1" /translation="MENSTFIQVVIEVGKSGDKTSKRWKSRLFFVFVGNLDPKVAWKQ LNNIFQELGIVVEIFIWKPNRLVRNERPSFTFVRYRTVEEIWRAIAQADERLIDGFNM IVNRALSNKLVRPKRLENQRLANQEKGKIQATSSTIRSFKEALCTDDVELCINGCRVK LRLLIDNNDDSEQIHLNSFNVCSNHSSIQSVASSRNGGAIAGREDVSNADVDFVDNGR APIMLTDERHSNDSDQLTKSRATLCRVVVTKWRGKKAIKKGVRNCKNKFEISIKLVSD SDIARRNEAIIKEVEETLYIGTKVDLEFDLCDEEMGKVFVK" mobile_element complement(20014956..20015097) /note="source:scaffold_1_CACTA_0008 14039 14175" /mobile_element_type="transposon:TIR/CACTA" gene 20014997..20022571 /locus_tag="TCM_029013" /note="dbxref CacaoGD:Thecc1EG029013" mRNA join(20014997..20015376,20015521..20015600, 20016467..20016997,20017151..20017296,20017978..20018054, 20018157..20018365,20022197..20022244,20022419..20022571) /locus_tag="TCM_029013" /product="DNA double-strand break repair rad50 ATPase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004429" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032144t3" /inference="similar to AA sequence:Phytozome:GSVIVT01016844001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02053t00001" mRNA join(20015098..20015376,20015521..20015600, 20016467..20016997,20017151..20017872) /locus_tag="TCM_029013" /product="DNA double-strand break repair rad50 ATPase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004429" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032144t6" /inference="similar to AA sequence:Phytozome:GSVIVT01016844001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc250t5; inference alignment:Newbler:10:TSA:cgbaB_g02053t00001" CDS join(20016468..20016997,20017151..20017296, 20017978..20018054,20018157..20018231) /locus_tag="TCM_029013" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG032144t3" /codon_start=1 /product="DNA double-strand break repair rad50 ATPase isoform 1" /protein_id="EOY27077.1" /db_xref="Phytozome:GSVIVT01016844001" /db_xref="TAIR:AT1G55170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HY12" /translation="MAGRNRIPREAFNDRRGFPPERPFLRGPPLPQPPPHPVLLEEEL EMQHAEIRRLLTDNRRLVEDRMAMQQEVGAAKEEIHRLNLVIGEIRVEQEVHSRELIE KGLKLEADIRATEPLKKEAVQLRTEVQKLKNVRQELTGQVQTLKQDVARLQVDNQQIP ILRAEIDGLHQELMHARTAIDYEKKANIELMEQRQAMEKNMVSMAREVEKLRAELASV DGRPWAAGGPYGMKFNSSEGAFPAPYEGYGVHLGVADKGPFYGPGPAAWEKPRMTRR" CDS join(20016468..20016997,20017151..20017373) /locus_tag="TCM_029013" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG032144t6" /codon_start=1 /product="DNA double-strand break repair rad50 ATPase isoform 2" /protein_id="EOY27078.1" /db_xref="Phytozome:GSVIVT01016844001" /db_xref="TAIR:AT1G55170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HY12" /translation="MAGRNRIPREAFNDRRGFPPERPFLRGPPLPQPPPHPVLLEEEL EMQHAEIRRLLTDNRRLVEDRMAMQQEVGAAKEEIHRLNLVIGEIRVEQEVHSRELIE KGLKLEADIRATEPLKKEAVQLRTEVQKLKNVRQELTGQVQTLKQDVARLQVDNQQIP ILRAEIDGLHQELMHARTAIDYEKKANIELMEQRQAMEKNMVSMAREVEKLRAELASV DGRPWAAGMTCLSFMYLVAVSPSNVSSVMFVV" gene 20020372..20024956 /locus_tag="TCM_029014" /note="dbxref CacaoGD:Thecc1EG029014" mRNA join(20020372..20020551,20022197..20022244, 20022419..20022566,20023507..20023654,20023893..20024956) /locus_tag="TCM_029014" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.74 coverage" CDS join(20022492..20022566,20023507..20023654, 20023893..20023999) /locus_tag="TCM_029014" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27079.1" /translation="MVSFPIPFRGLLQSLVMTGLDRNSLHVPCLRNANDLEGIFLFSV SQLLKLKKIRANVYLTREMLGFTHLFELPLVSDHKELQIYMGFSLPESGNGAPSSSGA EAIVEPK" mobile_element 20024915..20025489 /note="source:CACAO_M_E23512_F28_scaffold_4 1 575" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20026490..20026891 /note="source:CACAO_MITE108_scaffold_6 1 402" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(20026781..20026903) /note="source:CACAO_on_E681_scaffold_9 37 157" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(20027133..20027284) /note="source:scaffold_1_CACTA_0008 7143 7269" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20027311..20027566 /note="source:INTACT135F_F90_scaffold_2-int 12867 13122" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(20027881..20028682) /locus_tag="TCM_029015" /note="dbxref CacaoGD:Thecc1EG029015" mRNA complement(20027881..20028682) /locus_tag="TCM_029015" /product="SKP1-like 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024013001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006613t1" /inference="similar to AA sequence:Phytozome:POPTR_0009s13810.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1708t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc8784t1" CDS complement(20028114..20028572) /locus_tag="TCM_029015" /note="paralog of Thecc1EG006613t1" /codon_start=1 /product="SKP1-like 4" /protein_id="EOY27080.1" /db_xref="Phytozome:POPTR_0009s13810.1" /db_xref="TAIR:AT1G20140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LNT9" /translation="MASTSKKIMLRSSDGKTVEVEEAVAVQLLTIKHMIEDDCADNEI PIPNVTSEILAKVLEYCKKHVDKGKMGEDELKAWDADFVKVDQNILYHLVLAANYLNI QSLLDLICQTVADMIKGKTPEEIRKTFNIENDFTPEEEEEIRRENQWAFE" gene complement(20030603..20037102) /locus_tag="TCM_029016" /note="dbxref CacaoGD:Thecc1EG029016" mRNA complement(join(20030603..20031443,20031597..20032800, 20032883..20033443,20033726..20034114,20037028..20037102)) /locus_tag="TCM_029016" /product="Phospholipase D alpha 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s02990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037005t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s02990.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2224t1" CDS complement(join(20030998..20031443,20031597..20032800, 20032883..20033443,20033726..20033812)) /locus_tag="TCM_029016" /note="paralog of Thecc1EG037005t1" /codon_start=1 /product="Phospholipase D alpha 4" /protein_id="EOY27081.1" /db_xref="Phytozome:POPTR_0003s02990.1" /db_xref="TAIR:AT1G55180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C888" /translation="MEGKQKFLHGTLEATIFDATPYIPPFPLNCVLANGKPTYVTIKL DNKKVAKTTLERDRVWNQTFQILCAHPPDSTITITMKTKCSILGKFCIQAGQILNEAS LISGFFPLQMENGKTNPELKLRFMLWFKPAEFEPTWGEVLKYGGFQGLRNATFPQRSN CHVMLYQDAHHSSAFQPPFSLCGSPRKLWEDVYKAIEGAKHLIYIAGWSFNPKMVLVR DPQTNIPHAKGIKLGELLKRKAEEGVAVRVMLWNDETSLPFIKNKGVMRTHDEDAFAY FKHTKVRCKLCPRLHHKFPTLFAHHQKTITVDARTYSTSSVNDREIMSFVGGVDLCDG RYDTEQHSLFRTLNTGAHCFDFYQTNISGASLHKGGPREPWHDAHACITGEAAWDVLA NFEQRWTKQCDPSLLLPTSSIPNLIRQPFASSISNDRNWKVQVFRSIDHVSVSQLSKN LTVEQSIHEAYVEAIRRAERFIYIENQYFIGGCHLWDKDKHSGCRNLIPVEIALKVAS KIKAKERFTVYILIPMWPEGVPDSEPVQDILHWTRETMSIMYKLIGESIKESGEPGHP RDYLNFFCLANRETQSKEEFVPPHSPQPSTQYWNAQKHRRFMVYVHSKVMIVDDLYIL IGSANVNQRSMDGRRDTEIAIGCYQLPENPESNNSTTPRDIHAYRMSLWYEHTGLADD VFLEPQSLECVQKVRSLGDQMWQIYANEEEIADMEGVHLVTYPVNVTVDGLTEDVADG GGNFPDTKSPVKGRRSKMLPPIFTT" gene 20037165..20038675 /locus_tag="TCM_029017" /note="dbxref CacaoGD:Thecc1EG029017" mRNA 20037165..20038675 /locus_tag="TCM_029017" /product="PRA1 family protein" /inference="alignment:exonerate-protein:2:frave:gene23086" /inference="similar to AA sequence:Phytozome:Glyma13g42730.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc613t1" CDS 20037266..20038000 /locus_tag="TCM_029017" /codon_start=1 /product="PRA1 family protein" /protein_id="EOY27082.1" /db_xref="Phytozome:Glyma13g42730.1" /db_xref="TAIR:AT1G55190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GCA5" /translation="MYGKAMDLAITLKTHPSLFHQYFYSLTPTSPTSLSFPSQSRSSS PKKKVKPSNFQPKNMASYGTIPTSSSPGPATNLEYLSRAKERIKEGLGTRRPWKLMFN IRSINFPGNLSEAISRVRTNVAYFRMNYAIIVLFVLFLSLLWHPISLIVFIVMMAAWL FLYFLRDEPIVVFSRTIDDRVVLIVLGVLTIVFLLLTHATLNILVSVLIGVVIILVHA TLRRTDDLYDEESAALMTGTGPSSSS" mobile_element 20041195..20041726 /note="source:scaffold_9_CACTA_0932 2884 3436" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20041265..20041875) /note="source:scaffold_2_CACTA_0244 12836 13469" /mobile_element_type="transposon:TIR/CACTA" gene 20041907..20046493 /locus_tag="TCM_029019" /note="dbxref CacaoGD:Thecc1EG029019" mRNA join(20041907..20042339,20043029..20043091, 20043183..20043264,20043381..20043455,20043623..20043701, 20043891..20043933,20044176..20044279,20044455..20044524, 20045369..20045451,20045544..20046493) /locus_tag="TCM_029019" /product="RNA-binding family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene23087" /inference="similar to AA sequence:frave:gene23087" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:PASA:2:TSA:puevd3b028064t1a2; inference alignment:Newbler:10:TSA:cgbaB_g11529t00001" mRNA join(20042071..20042339,20043029..20043091, 20043183..20043264,20043381..20043455,20043623..20043701, 20043891..20043933,20044170..20044279,20044455..20044524, 20045369..20045451,20045544..20046225) /locus_tag="TCM_029019" /product="RNA-binding family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene23087" /inference="similar to AA sequence:frave:gene23087" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11529t00001" CDS join(20042154..20042339,20043029..20043091, 20043183..20043264,20043381..20043455,20043623..20043701, 20043891..20043933,20044170..20044279,20044455..20044524, 20045369..20045451,20045544..20045574) /locus_tag="TCM_029019" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene23087" /codon_start=1 /product="RNA-binding family protein isoform 1" /protein_id="EOY27083.1" /db_xref="TAIR:AT3G13700.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MWQ9" /translation="MSRPPYEYDPYYLQPDQDRNLINTLFVSGLPDDVKAREIHNLFR RRAGFDSCQLKYTGRGNQVVAFATFLNHQSAIAAMHALNGVKFDPQAGSVLHIELARS NSRRKRKPDSGPYVVIDKRTKASANTQETSSDDGGSDTEEPSGTDDANSSNKGDLRTV KSETIVDPENAVAAANEQLERNVDEGAQPCSTLFIANLGPNCTEDELKQVLSRYPGFN MLKIRAKGGMPVAFADFEQTEQATTVMTDLQSSLLPSSDRGGMNIEYARSKMRKP" CDS join(20042154..20042339,20043029..20043091, 20043183..20043264,20043381..20043455,20043623..20043701, 20043891..20043933,20044176..20044279,20044455..20044524, 20045369..20045451,20045544..20045574) /locus_tag="TCM_029019" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene23087" /codon_start=1 /product="RNA-binding family protein isoform 2" /protein_id="EOY27084.1" /db_xref="TAIR:AT3G13700.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MWQ9" /translation="MSRPPYEYDPYYLQPDQDRNLINTLFVSGLPDDVKAREIHNLFR RRAGFDSCQLKYTGRGNQVVAFATFLNHQSAIAAMHALNGVKFDPQAGSVLHIELARS NSRRKRKPDSGPYVVIDKRTKASANTQETSSDDGGSDTEEPSGTDDANSSNKGDLRTV KSETIVDPENAVAAANLERNVDEGAQPCSTLFIANLGPNCTEDELKQVLSRYPGFNML KIRAKGGMPVAFADFEQTEQATTVMTDLQSSLLPSSDRGGMNIEYARSKMRKP" gene complement(20045509..20053631) /locus_tag="TCM_029020" /note="dbxref CacaoGD:Thecc1EG029020" mRNA complement(join(20045509..20046482,20046578..20047284, 20047682..20047831,20048048..20048195,20048280..20048356, 20048689..20048849,20049312..20050354,20050471..20050565, 20050656..20050807,20051451..20052547,20052990..20053631)) /locus_tag="TCM_029020" /product="Kinase protein with adenine nucleotide alpha hydrolases-like domain isoform 1" /inference="alignment:exonerate- protein:2:ricco:28694.m000686" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037689t1" /inference="similar to AA sequence:ricco:28694.m000686" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b028065t1a2; alternateUTRof:Thecc1EG029020t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4763t2" mRNA complement(join(20046235..20046482,20046578..20046775, 20047034..20047284,20047682..20047831,20048048..20048195, 20048280..20048356,20048689..20048849,20049312..20050354, 20050471..20050565,20050656..20050807,20051451..20051687, 20052097..20052547,20053245..20053631)) /locus_tag="TCM_029020" /product="Kinase protein with adenine nucleotide alpha hydrolases-like domain isoform 1" /inference="alignment:exonerate- protein:2:ricco:28694.m000686" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037689t1" /inference="similar to AA sequence:ricco:28694.m000686" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4763t2" CDS complement(join(20047069..20047284,20047682..20047831, 20048048..20048195,20048280..20048356,20048689..20048849, 20049312..20050354,20050471..20050565,20050656..20050807, 20051451..20051634)) /locus_tag="TCM_029020" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28694.m000686; paralog of Thecc1EG037689t1" /codon_start=1 /product="Kinase protein with adenine nucleotide alpha hydrolases-like domain isoform 1" /protein_id="EOY27085.1" /db_xref="TAIR:AT3G13690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIC9" /translation="MSREQKKGKQEKGGTDVAEKVVVAVKASKEIPKTALVWALTHVV QPGDCITLLVVVPSHGSGRKWGFPRFAGDCASGSRKSQSGSSSEQKSDITDSCSQMIL QLHDVYDPNKINVKIKIVSGSPCGAVAAEAKLAQASWVVLDKQLKNEEKRCMEELQCN IVVMKRSQAKVLRLNLVGSPKKEADASCQLNSEMDERSEKHPKSKNGSSGSIRGPAVT PTSSPELGTPFTATEAGTSSVSSSDPGTSPFFISEGNGDLKKEESIVIKENQDLDESS SDTESENLSLSSASLRFQPWITEYLTSHHRSSQHLEETSGRANDRAQASTTKALLEKF SKLDREAGIGISSFRSDTEFSGNVREAISLSRNAPPGPPPLCSICQHKAPVFGKPPRW FTYAELELATGGFSQANFLAEGGFGSVHRGVLPDGQAIAVKQHKLASSQGDLEFCSEV EVLSCAQHRNVVMLIGFCIEDRRRLLVYEYICNGSLDSHLYGRHREPLEWSARQKIAV GAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRV IGTFGYLAPEYAQSGQITEKADVYSFGVVLIELVTGRKAVDLNRPKGQQCLTEWARPL LEEYAIDELVDPRLGDCYSEHEVYCMLHAASSCIRRDPHSRPRMSQVLRILEGDMLMD TNYTSPGYDVGNRSGRIWAEQKQHYSGPLVNEASEGFSGKLSLEGLRPGTRRKSCEED L" CDS complement(join(20047069..20047284,20047682..20047831, 20048048..20048195,20048280..20048356,20048689..20048849, 20049312..20050354,20050471..20050565,20050656..20050807, 20051451..20051634)) /locus_tag="TCM_029020" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28694.m000686; paralog of Thecc1EG037689t1" /codon_start=1 /product="Kinase protein with adenine nucleotide alpha hydrolases-like domain isoform 1" /protein_id="EOY27086.1" /db_xref="TAIR:AT3G13690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIC9" /translation="MSREQKKGKQEKGGTDVAEKVVVAVKASKEIPKTALVWALTHVV QPGDCITLLVVVPSHGSGRKWGFPRFAGDCASGSRKSQSGSSSEQKSDITDSCSQMIL QLHDVYDPNKINVKIKIVSGSPCGAVAAEAKLAQASWVVLDKQLKNEEKRCMEELQCN IVVMKRSQAKVLRLNLVGSPKKEADASCQLNSEMDERSEKHPKSKNGSSGSIRGPAVT PTSSPELGTPFTATEAGTSSVSSSDPGTSPFFISEGNGDLKKEESIVIKENQDLDESS SDTESENLSLSSASLRFQPWITEYLTSHHRSSQHLEETSGRANDRAQASTTKALLEKF SKLDREAGIGISSFRSDTEFSGNVREAISLSRNAPPGPPPLCSICQHKAPVFGKPPRW FTYAELELATGGFSQANFLAEGGFGSVHRGVLPDGQAIAVKQHKLASSQGDLEFCSEV EVLSCAQHRNVVMLIGFCIEDRRRLLVYEYICNGSLDSHLYGRHREPLEWSARQKIAV GAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRV IGTFGYLAPEYAQSGQITEKADVYSFGVVLIELVTGRKAVDLNRPKGQQCLTEWARPL LEEYAIDELVDPRLGDCYSEHEVYCMLHAASSCIRRDPHSRPRMSQVLRILEGDMLMD TNYTSPGYDVGNRSGRIWAEQKQHYSGPLVNEASEGFSGKLSLEGLRPGTRRKSCEED L" mRNA complement(join(<20048047..20048195,20048280..20048356, 20048689..20048849,20049312..20050354,20050471..20050565, 20050656..20050807,20051451..20052547,20053245..20053337)) /locus_tag="TCM_029020" /product="Kinase protein with adenine nucleotide alpha hydrolases-like domain isoform 3" /inference="alignment:exonerate- protein:2:ricco:28694.m000686" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037689t2" /inference="similar to AA sequence:ricco:28694.m000686" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc224t19; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4763t2" CDS complement(join(<20048048..20048195,20048280..20048356, 20048689..20048849,20049312..20050354,20050471..20050565, 20050656..20050807,20051451..20051634)) /locus_tag="TCM_029020" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28694.m000686; paralog of Thecc1EG037689t2" /codon_start=1 /product="Kinase protein with adenine nucleotide alpha hydrolases-like domain isoform 3" /protein_id="EOY27087.1" /db_xref="TAIR:AT3G13690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIC9" /translation="MSREQKKGKQEKGGTDVAEKVVVAVKASKEIPKTALVWALTHVV QPGDCITLLVVVPSHGSGRKWGFPRFAGDCASGSRKSQSGSSSEQKSDITDSCSQMIL QLHDVYDPNKINVKIKIVSGSPCGAVAAEAKLAQASWVVLDKQLKNEEKRCMEELQCN IVVMKRSQAKVLRLNLVGSPKKEADASCQLNSEMDERSEKHPKSKNGSSGSIRGPAVT PTSSPELGTPFTATEAGTSSVSSSDPGTSPFFISEGNGDLKKEESIVIKENQDLDESS SDTESENLSLSSASLRFQPWITEYLTSHHRSSQHLEETSGRANDRAQASTTKALLEKF SKLDREAGIGISSFRSDTEFSGNVREAISLSRNAPPGPPPLCSICQHKAPVFGKPPRW FTYAELELATGGFSQANFLAEGGFGSVHRGVLPDGQAIAVKQHKLASSQGDLEFCSEV EVLSCAQHRNVVMLIGFCIEDRRRLLVYEYICNGSLDSHLYGRHREPLEWSARQKIAV GAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRV IGTFGYLAPEYAQSGQITEKADVYSFGVVLIELVTGRKAVDLNRPKGQQCLTEW" mobile_element 20054325..20055346 /note="source:scaffold_4_CACTA_0506 1685 3579" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20055723..20056252) /note="source:CACAO_M_S_E119699_F217_scaffold_9 12 543" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 20061510..20061698 /note="source:CACAO_PIF_E119_scaffold_3 4492 4680" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(20063026..20063358) /note="source:CACAO_Mutator_E1888_scaffold_9 7455 7797" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(20063041..20063568) /note="source:scaffold_9_CACTA_0932 3101 3595" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20063359..20064032) /note="source:INTACT135F_F90_scaffold_2-int 12866 13997" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20067169..20069211 /note="source:scaffold_5_CACTA_0615 185 2259" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20069778..20073271 /note="source:INTACT561_F253_scaffold_5-int 1387 4282" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20073778..20073847) /note="source:INTACT459_F220_scaffold_4-int 8336 8404" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20075465..20077032 /note="source:CACAO_M_E44258_F10_scaffold_5 1477 3033" /mobile_element_type="retrotransposon:LTR/Copia" gene 20076684..20086706 /locus_tag="TCM_029022" /note="dbxref CacaoGD:Thecc1EG029022" mRNA join(20076684..20076845,20079166..20079633, 20080168..20082116,20082211..20082531,20082641..20082727, 20082819..20083439,20083546..20083710,20083784..20084078, 20084164..20084378,20084546..20084851,20084931..20084994, 20085213..20085452,20085611..20086706) /locus_tag="TCM_029022" /product="Multidrug resistance-associated protein 6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016879001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015324t1" /inference="similar to AA sequence:ricco:28694.m000689" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1001t1" mRNA join(20079386..20079633,20080168..20080280, 20080349..20082116,20082211..20082531,20082641..20082727, 20082819..20083439,20083546..20083710,20083784..20084078, 20084164..20084378,20084546..20084851,20084931..20084994, 20085213..20085452,20085611..20085949) /locus_tag="TCM_029022" /product="Multidrug resistance protein ABC transporter family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016879001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015324t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s02950.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1024t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1001t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc975t4" CDS join(20079609..20079633,20080168..20082116, 20082211..20082531,20082641..20082727,20082819..20083439, 20083546..20083710,20083784..20084078,20084164..20084378, 20084546..20084851,20084931..20084994,20085213..20085452, 20085611..20085738) /locus_tag="TCM_029022" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28694.m000689; paralog of Thecc1EG015324t1" /codon_start=1 /product="Multidrug resistance-associated protein 6 isoform 1" /protein_id="EOY27088.1" /db_xref="TAIR:AT3G21250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LGU1" /translation="MASMTTLLGVLAFICEGKLDFGSFCFQRTIIDVINLLFLFVFYL LLLGGSIKKHQSSVVNIRDWISLVVSICCALTSILYLGAGLWNLIAKNDGFNNFSWLV ALVRGLIWISLAISLFVQKSQWMRFLITAWWVSFSLLVSALHIEVLFGTHSIEILDIF PWLVNILLLFCALRNFIHLVRKRAEDESLSELLLEEKEEKNQTEICQASFLRKLAFSW INPLLSLGYVRPLALEDIPSIAIEDESNLAYQKFANAWESLVRETSSSDRRNLVLRAI TKVFFKENIIIVVCALLRTIAVVALPLLLYAFVNYSNQDEENLQEGLVLLGCLILSKV VESLSQRHWYFDSRRSGMRMRSALMVAVYQKQLKLSSLGRRRHSAGEIVNYIAVDAYR MGECLWWFHSTWSLVLQLFMSIGVLFSVVGLGAIPGLVPLLTCGFLNMPFAKLLQKCQ SEFMIAQDERLRTTSEILNSMKIIKLQSWEEKFKGLIESQRGKEFKWLSKQQLFRPYG TVLYWVSPTIVSSVVFLGCALFGSAPLNAGTIFTVLATLRSMAEPVRMLPEALSILIQ VKVSFDRINTFLLDDELNNNEVRKIPLQNSDRSVKIQAGNFSWDPEITSPTLKSLDLE IKRGQKIAVCGPVGAGKSSLLYAVLGEIPKLSGSVHVFESIAYVSQTSWIQSGTIRDN ILYGKPMDADKYEKAIKACALDKDINSFDHGDLTEIGQRGINMSGGQKQRIQLARAVY NDADIYLLDDPFSAVDAHTAAVLFNDCVMTALEKKTVILVTHQVEFLSEVDRILVMEG GKITQSGSYEELLKAGTAFQQLVNAHRDAITVLGSLNSEGQGESQGLAVVRPEMFNGS YPTKQNSEGEISVKGPPGVQLTQDEEKEIGDVGWKPFLDYVSVSKGSLHLSLSILTQS TFVILQAASTYWLAFAIQIPNMSSSMLIGVYTGIATLSAVFVYFRSYYAAHLGLKASK AFFSGLTNAIFKAPMLFFDSTPVGRILTRASSDMSILDFDIPFAIIFVAAGVTEVIAT IGIMAFITWQVLIVAILAMVAVNYIQGYYMSSARELIRVNGTTKAPVMNYAAETSLGV VTIRAFNMVDRFFKNYLKLVDTDATLFFLSNAAMEWLVLRIETLQNLTLFTAAFFLLL LPKSQVTPGLVGLSLSYALSLTGTQIFASRWYCNLSNYIISVERIKQFMHLPAEPPAI IEDNRPPSSWPPKGRIELQELKIRYRPNAPLVLKGISCTFREGTRVGVVGRTGSGKTT LISALFRLVEPASGKILIDGLDICSMGLKDLRMKLSIIPQEPTLFRGSIRTNLDPLGL YSDDEIWKALEKCQLKTTISGLPNKLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL VLDEATASIDSATDAILQRVIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYD EPSNLMEINSSFSKLVAEYWSSCRRNSYQNFSSYQ" CDS join(20080515..20082116,20082211..20082531, 20082641..20082727,20082819..20083439,20083546..20083710, 20083784..20084078,20084164..20084378,20084546..20084851, 20084931..20084994,20085213..20085452,20085611..20085738) /locus_tag="TCM_029022" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015324t1" /codon_start=1 /product="Multidrug resistance protein ABC transporter family isoform 2" /protein_id="EOY27089.1" /db_xref="Phytozome:POPTR_0003s02950.1" /db_xref="TAIR:AT3G21250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MWQ7" /translation="MRFLITAWWVSFSLLVSALHIEVLFGTHSIEILDIFPWLVNILL LFCALRNFIHLVRKRAEDESLSELLLEEKEEKNQTEICQASFLRKLAFSWINPLLSLG YVRPLALEDIPSIAIEDESNLAYQKFANAWESLVRETSSSDRRNLVLRAITKVFFKEN IIIVVCALLRTIAVVALPLLLYAFVNYSNQDEENLQEGLVLLGCLILSKVVESLSQRH WYFDSRRSGMRMRSALMVAVYQKQLKLSSLGRRRHSAGEIVNYIAVDAYRMGECLWWF HSTWSLVLQLFMSIGVLFSVVGLGAIPGLVPLLTCGFLNMPFAKLLQKCQSEFMIAQD ERLRTTSEILNSMKIIKLQSWEEKFKGLIESQRGKEFKWLSKQQLFRPYGTVLYWVSP TIVSSVVFLGCALFGSAPLNAGTIFTVLATLRSMAEPVRMLPEALSILIQVKVSFDRI NTFLLDDELNNNEVRKIPLQNSDRSVKIQAGNFSWDPEITSPTLKSLDLEIKRGQKIA VCGPVGAGKSSLLYAVLGEIPKLSGSVHVFESIAYVSQTSWIQSGTIRDNILYGKPMD ADKYEKAIKACALDKDINSFDHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLL DDPFSAVDAHTAAVLFNDCVMTALEKKTVILVTHQVEFLSEVDRILVMEGGKITQSGS YEELLKAGTAFQQLVNAHRDAITVLGSLNSEGQGESQGLAVVRPEMFNGSYPTKQNSE GEISVKGPPGVQLTQDEEKEIGDVGWKPFLDYVSVSKGSLHLSLSILTQSTFVILQAA STYWLAFAIQIPNMSSSMLIGVYTGIATLSAVFVYFRSYYAAHLGLKASKAFFSGLTN AIFKAPMLFFDSTPVGRILTRASSDMSILDFDIPFAIIFVAAGVTEVIATIGIMAFIT WQVLIVAILAMVAVNYIQGYYMSSARELIRVNGTTKAPVMNYAAETSLGVVTIRAFNM VDRFFKNYLKLVDTDATLFFLSNAAMEWLVLRIETLQNLTLFTAAFFLLLLPKSQVTP GLVGLSLSYALSLTGTQIFASRWYCNLSNYIISVERIKQFMHLPAEPPAIIEDNRPPS SWPPKGRIELQELKIRYRPNAPLVLKGISCTFREGTRVGVVGRTGSGKTTLISALFRL VEPASGKILIDGLDICSMGLKDLRMKLSIIPQEPTLFRGSIRTNLDPLGLYSDDEIWK ALEKCQLKTTISGLPNKLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS IDSATDAILQRVIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSNLMEI NSSFSKLVAEYWSSCRRNSYQNFSSYQ" mobile_element complement(20087224..20087291) /note="source:CACAO_Mutator_E1376_scaffold_6 1862 1929" /mobile_element_type="transposon:TIR/Mutator" gene 20087266..20092481 /locus_tag="TCM_029023" /note="dbxref CacaoGD:Thecc1EG029023" mRNA join(20087266..20088729,20088846..20088941, 20089080..20089349,20089438..20089524,20089991..20090106, 20090399..20090513,20090594..20090888,20090981..20091195, 20091471..20091776,20092198..20092481) /locus_tag="TCM_029023" /product="Multidrug resistance protein ABC transporter family" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016879001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029022t2" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4631t3" CDS join(20087356..20088729,20088846..20088941, 20089080..20089349,20089438..20089524,20089991..20090106, 20090399..20090513,20090594..20090888,20090981..20091195, 20091471..20091776,20092198..20092269) /locus_tag="TCM_029023" /note="paralog of Thecc1EG029022t2" /codon_start=1 /product="Multidrug resistance protein ABC transporter family" /protein_id="EOY27090.1" /db_xref="TAIR:AT3G21250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MWQ7" /translation="MHQNSHSFSLLVTALNIKLLLQTHNIPIFDVMPWPINILLLFCA FTKLLSSATQRNEDQSLSEPLLVSKAEKTQVGIGQASFFSKLTFSWINPLFSLGYSKL LTLEDIPSLVDEDEARLAYEKFSHAWEFLVREKSLSNSTNLVLRALAKEYFKQNILIA ICAFLRIVSVVSLPLLLYAFVNYSNHSEDNKYEGLSILGCLVICKVVESLSQRRWFFS SRRLGMRMRSALMVAVYQKLLKLSCVGRRRHSSGEVVNFIAVDAYRLGEFLWWLHAAW SLALQRFMSIGVLFYVVGLGALPGLVPLLICGLLNVPFANVPQKCPTEFMVAQDERLR LTSEVLNNMKIIKLQSWEEIFKNWIEARRDNEFKWLAKEQISKAYGTDLFWISPTIIS SVIFLGCALFGSAPPNASTIFTVLATPRSMGEPVTMIPGAPSIIMQVKVSTERINAFL LDDELKNEKGQKIAVCEPVGAGKPSLLHAMLGEIPKISGTSGTIHDNMLYGKPMDEEG YKRAVKSCALDKDIDNFDHGCPTEIVQRGINMSGGQKQRIQLARAVYDDADIYLLDDP FSAVDAQTAAVLFNDCVMAALGKKTVVLVTHQVEFLSKVDRILAAASYWLAVSIQIPK ISSGVLIGVYTGISTLSAVFVHLSFMAAGSIELLAAIGVIAFVTWEVLVVAILAFGAV KYIQGYHLASARELIRINGTTKAPVMNYAAETSVGVVTIRAFNKVERFFKNYLKPVDT DAALFFHCAAAMEWLILRIEALQNLTMFTSFFLLGLLPKGYVAPGLAGLSLSYALSIT STQVFMSRWYCTLSNYIISVERIKQFMSIPAEPPATIEDKRPPSTWPSKGRIELLELK IRYHPNAPLVLKEITCIFKEGTRVRVVGRTGSGKSTLISALFRLVVPARGNILIDGLY ICSIGLKDLRMKLSIIPQEPTLFRGCVRTNLDPLGLYTDEDIWKSVMKGRIGVWDSDN SFALEESCL" mobile_element 20093417..20093532 /note="source:CACAO_PIF_E119_scaffold_3 4453 4581" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 20094295..20095074 /locus_tag="TCM_029025" /note="dbxref CacaoGD:Thecc1EG029025" mRNA 20094295..20095074 /locus_tag="TCM_029025" /product="PYR1-like 3" /inference="alignment:exonerate- protein:2:TAIR:AT1G73000.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037275t1" /inference="similar to AA sequence:ricco:29794.m003335" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1635t1" CDS 20094408..20094986 /locus_tag="TCM_029025" /note="dbxref ricco:29794.m003335; paralog of Thecc1EG037275t1" /codon_start=1 /product="PYR1-like 3" /protein_id="EOY27091.1" /db_xref="TAIR:AT1G73000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSM7" /translation="MNPNLSTCYNNLTKEEISKLESIIQTHHTFPPASNTCTSLITQR INAPLSFIWPFVRDFENPNKYKHFIKSCTMKGDGGVGSMRDVTVISGLPASTSTEILE VLDDDDHVLSFRLVGGDHRLNNYRAVTSVNEFNQGGKAYSMVLESYTVEIPQGNTEED TKMFVDTVVKLNLQKLADVAMAALQGHETKVV" mobile_element 20097601..20098208 /note="source:CACAO_on_E2_scaffold_1 28 615" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(20097695..20098584) /note="source:CACAO_on_E8_scaffold_1 2283 3130" /mobile_element_type="transposon:TIR/hAT" mobile_element 20098594..20098743 /note="source:CACAO_on_E26_scaffold_4 3053 3203" /mobile_element_type="transposon:TIR/hAT" gene complement(20098677..20100243) /locus_tag="TCM_029026" /note="dbxref CacaoGD:Thecc1EG029026" mRNA complement(join(20098677..20099226,20099482..20099686, 20099786..20099907,20100005..20100243)) /locus_tag="TCM_029026" /product="Inorganic pyrophosphatase 2" /inference="alignment:exonerate- protein:2:ricco:28694.m000691.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029006t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s20130.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1157t1" CDS complement(join(20098852..20099226,20099482..20099686, 20099786..20099907,20100005..20100142)) /locus_tag="TCM_029026" /note="paralog of Thecc1EG029006t1" /codon_start=1 /product="Inorganic pyrophosphatase 2" /protein_id="EOY27092.1" /db_xref="Phytozome:POPTR_0008s20130.1" /db_xref="TAIR:AT1G17710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZ62" /translation="MVDIVVIFDFDKTIIDCDSDNWVLDELGATKLFNQLLPTMPWNP LMDRMMKELHSQGTKIEDIKAVLKRTPIHPRIIQAIKSAYALGCDLKIVSDANAFFIE TILKHHGLREYFSEINTNPGFVDEEGRLRIFPHHDFTQSPHGCHHPCPPNMCKGTVIE RIQASMSMKGKKTIIYLGDGVGDFCPSLKLGDGDYVMPRKNFPVWDLICENRRLIKAE ICEWSNGEEFEHVLLHVINRISIDRNNSDNTARLYSIDCKLQTLPGAAQEKAFSHALY VPH" mobile_element complement(20101535..20102339) /note="source:CACAO_Again_on_S_E38_scaffold_1 2 789" /mobile_element_type="transposon:TIR/hAT" gene complement(20102510..20105409) /locus_tag="TCM_029027" /note="dbxref CacaoGD:Thecc1EG029027" mRNA complement(join(20102510..20103134,20103234..20103373, 20104664..20104865,20104951..20105006,20105163..20105409)) /locus_tag="TCM_029027" /product="Pyridoxal phosphate phosphatase-related protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400001922" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029005t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s20130.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc7771t1_G2" CDS complement(join(20103011..20103134,20103234..20103373, 20104664..20104865,20104951..20105006,20105163..20105300)) /locus_tag="TCM_029027" /note="paralog of Thecc1EG029005t1" /codon_start=1 /product="Pyridoxal phosphate phosphatase-related protein" /protein_id="EOY27093.1" /db_xref="Phytozome:POPTR_0008s20130.1" /db_xref="TAIR:AT1G17710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZ62" /translation="MAGIVVVFDFDKTIIDYDSDNWVVDELGFSDLFNQFLPTMPWNS FMRTPIHYRVVPAIKAAHALGCELRIVSDANLFFIEKILEYLGLKEYFSEINTNPGFV DEEGRLRIFSYHDFNKCSHGCNLSPLNMCKGMIIERIQASLEGKKKIIYLGYGSGDYC PSLRLGEADCMMPRKNFPVMISVEENNDNSVQLISIDGKLQTISASTHEALPQALPVT Q" mobile_element 20103502..20104392 /note="source:CACAO_M_S_E84612_F20_scaffold_6 1 891" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20107415..20110213 /locus_tag="TCM_029028" /note="dbxref CacaoGD:Thecc1EG029028" mRNA join(20107415..20107564,20108989..20109047, 20109173..20109355,20109490..20110213) /locus_tag="TCM_029028" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS join(20108992..20109047,20109173..20109355, 20109490..20109583) /locus_tag="TCM_029028" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27094.1" /translation="MLSHGGSGQSGVKAGDVFGNEMVFEGKQWNANQCFELVKIIFAT WANAKWPKEFPSIFDTYRQPPTKCEQQKWSKAKKECRNRRCQPCQDTSSKGSTCGVRN IKVEGLKG" mobile_element complement(20110501..20110547) /note="source:CACAO_Helitron_E2_scaffold_1 1702 1748" /mobile_element_type="transposon:Helitron" mobile_element 20111318..20111813 /note="source:scaffold_4_CACTA_0482 16794 17286" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20111811..20111965 /note="source:scaffold_5_CACTA_0608 5915 6076" /mobile_element_type="transposon:TIR/CACTA" gene 20111972..20115531 /locus_tag="TCM_029029" /note="dbxref CacaoGD:Thecc1EG029029" mRNA join(20111972..20112348,20112591..20112751, 20112936..20113025,20113104..20113156,20113630..20113732, 20114471..20114634,20114935..20115531) /locus_tag="TCM_029029" /product="RNA binding protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016848001" /inference="similar to AA sequence:Phytozome:Glyma15g02740.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16123t1" CDS join(20112144..20112348,20112591..20112751, 20112936..20113025,20113104..20113156,20113630..20113732, 20114471..20114634,20114935..20114962) /locus_tag="TCM_029029" /codon_start=1 /product="RNA binding protein, putative" /protein_id="EOY27095.1" /db_xref="Phytozome:Glyma15g02740.1" /db_xref="TAIR:AT1G55140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SN41" /translation="MAILTWTPPPTAVPAAVTASWDTQQRPSYNPNAPRKLKPNPNLK PSPTVTLTTRTDPSVFDILKRPTQEVTPVKVDTDESYMGYERWLPTPPKVAKPRSVFN AATLAYIGDCIYEVVLYAQYLYARRHFLFPPLSIEEYNDRVTSVVRCEAQDALLQELL DDSFLSNDERNVLRWGKNISSSKTRTKKRAGAAVYNRASSLETLIGYLYLTNVNRLEK LMVKLGFSTGASTEMILKEVNGKLKLIHSAKKHCLLCLKLIWIMSEKPL" mobile_element complement(20117675..20117763) /note="source:scaffold_3_CACTA_0377 2488 2575" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20117870..20118808) /note="source:scaffold_4_CACTA_0511 12880 13838" /mobile_element_type="transposon:TIR/CACTA" gene 20119596..20120629 /locus_tag="TCM_029030" /note="dbxref CacaoGD:Thecc1EG029030" mRNA 20119596..20120629 /locus_tag="TCM_029030" /product="Receptor-like protein kinase-related family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s06720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044280t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s02720.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16122t1" CDS 20119638..20120366 /locus_tag="TCM_029030" /note="paralog of Thecc1EG044280t1" /codon_start=1 /product="Receptor-like protein kinase-related family protein" /protein_id="EOY27096.1" /db_xref="Phytozome:POPTR_0007s02720.1" /db_xref="TAIR:AT3G22060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HIL6" /translation="MSSSRFPSLLYLLTFAFLLQAAFGVDPLFHFCSNAGNFSAHDPY EDNLNKLTGYLSIQAPPSGFGLGSIGQKPNQAYGLALCRGDVSTPDCKTCIVEAGSEI RKRCPSNKGAIIWYDNCLLKYSNTEFFGQIDNRNKFYMWNLRDVSDPQSFNQKTKELL SQLANEAYATPKLYATGETELYGSQKLYGLTQCTRDLSSSDCKKCLDGIIGELPSCCD GKEGGRVVGGSCNFRYEIYPFVNA" mobile_element 20124627..20124665 /note="source:CACAO_M_E14074_F143_scaffold_3 1271 1309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20130220..20130306 /note="source:scaffold_4_CACTA_0483 2565 2648" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20130761..20130804 /note="source:INTACT605_F14_scaffold_8-int 4222 4265" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20134745..20134842) /note="source:CACAO_PIF_E119_scaffold_3 1997 2098" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 20137256..20144820 /locus_tag="TCM_029031" /note="dbxref CacaoGD:Thecc1EG029031" mRNA join(20137256..20137832,20138090..20138185, 20138309..20138421,20138509..20138575,20138746..20138838, 20139007..20139150,20139696..20139784,20139909..20140014, 20140095..20140182,20140366..20140484,20140577..20140741, 20141031..20141209,20141363..20141472,20141784..20141893, 20141984..20142094,20142176..20142286,20142549..20142754, 20142844..20143180,20143520..20144105,20144444..20144820) /locus_tag="TCM_029031" /product="Beta galactosidase 1" /inference="alignment:exonerate- protein:2:ricco:28694.m000675" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037665t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s03060.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4735t2" CDS join(20137656..20137832,20138090..20138185, 20138309..20138421,20138509..20138575,20138746..20138838, 20139007..20139150,20139696..20139784,20139909..20140014, 20140095..20140182,20140366..20140484,20140577..20140741, 20141031..20141209,20141363..20141472,20141784..20141893, 20141984..20142094,20142176..20142286,20142549..20142754, 20142844..20143180,20143520..20143630) /locus_tag="TCM_029031" /note="paralog of Thecc1EG037665t1" /codon_start=1 /product="Beta galactosidase 1" /protein_id="EOY27097.1" /db_xref="Phytozome:POPTR_0003s03060.1" /db_xref="TAIR:AT3G13750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P48980" /translation="MDSNSKLPVMWNALLVLLFASWVCSVSASVSYDRKAITINGQRR ILISGSIHYPRSSPEMWPDLVQKAKEGGLDVIQTYVFWNGHEPAPGKYYFQGNYDLVK FIKLVQQAGLYVHLRIGPYVCAEWNFGGFPVWLKYIPGINFRTNNGPFKAQMQRFTEK IVDMMKAERLFESQGGPIILSQIENEYGPMEYELGAPGKAYTDWAAKMAVGLGTGVPW VMCKQDDAPDPIINTCNGFYCDYFSPNKAYKPKIWTEAWTGWYTEFGGAVPYRPAEDL AFSVARFIQKGGAFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGH LKDLHRAIKLCEPALVNGDPTVMRLGNYQEAHVFKYQSGGCAAFLANYNPRSFAKVAF GNMHYNLPPWSISILPDCKNTVYNTARVGAQIARKKMVPVPMHGAFSWQAYSEETASD VDSSFTMVGLLEQINTTKDATDYLWYTTDIKIDPSEGFLKNGNSPVLTILSAGHALHV FVNGQLSGSAYGSLEFPKLTFSQGVNLRAGVNKISLLSIAVGLPNVGPHFETWNAGIL GPVTLNGLNEGRRDLSWQKWSYKIGLEGEALNLHSLSGSSSVEWAQGSFVARRQPLMW YKTTFNAPAGNAPLALDMHSMGKGQIWINGQSIGRHWPAYKASGNCGDCNYAGTYDEK KCRTNCGEASQGWYHIPRSWLNPTGNLLVVFEEWGGDPNAISLVRRETDSVCADIYEW QPTLMNYQMQASGKVNKPLRPKVHLECDAGQKISAVKFASFGTPEGACGSYREGSCHA HHSYDAFNRLCVGQNFCSVTVAPEMFGGDPCPSVMKKLSVEVICS" mobile_element complement(20146889..20148124) /note="source:CACAO_PIF_E144_scaffold_10 1304 2390" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 20148511..20153415 /locus_tag="TCM_029032" /note="dbxref CacaoGD:Thecc1EG029032" mRNA join(20148511..20149197,20151269..20151321, 20151766..20151853,20151952..20152050,20152640..20152767, 20152854..20152941,20153026..20153415) /locus_tag="TCM_029032" /product="F11A6.1 protein, putative" /inference="alignment:exonerate- protein:2:ricco:28694.m000674" /inference="similar to AA sequence:ricco:28694.m000674" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1438t11" CDS join(20148577..20149197,20151269..20151321, 20151766..20151853,20151952..20152050,20152640..20152767, 20152854..20152890) /locus_tag="TCM_029032" /note="dbxref ricco:28694.m000674" /codon_start=1 /product="F11A6.1 protein, putative" /protein_id="EOY27098.1" /db_xref="TAIR:AT1G17665.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZ66" /translation="MFFFFFLFSFALSFLFFFFSFYYKNLHKQQQQQQQEGKTENEPA LLNRSLSDIVDKKPQTRENDPTHLHHSLLLEILPFDSTKWAGLFTGENQRRGDKGQVG SGREVERCESESGDQRTKKKKKRGKKKRFNSKGEEENGEERCSSVEEEKKKREESGQG CPRPRLKPELVCLYPFTSTSSATQRKIKQQYDQLVKCHENKGLTLAQVGEFANCLIEA RNELQHKSEVIKRKFTITKALLFKADRSSFDRLRQQIFKLEMEQKRLEEDAFVYNWLQ QQLKLSPAYKKMLEIGACMELKSKSGELMEGTDTEFADISFEELLAQEKKDSFWQKNG KSRLSSN" mobile_element 20150808..20150854 /note="source:CACAO_Again_on_E41_scaffold_2 190 235" /mobile_element_type="transposon:TIR/hAT" gene 20153755..20158341 /locus_tag="TCM_029033" /note="dbxref CacaoGD:Thecc1EG029033" mRNA join(20153755..20154248,20155134..20155212, 20155521..20155586,20156137..20156212,20156300..20156355, 20156617..20156701,20156841..20156901,20157152..20157204, 20157323..20157393,20157478..20157550,20157651..20157755, 20157839..20158341) /locus_tag="TCM_029033" /product="Glyoxylate reductase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g42500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002531t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016871001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01905t00002" mRNA join(20154044..20154248,20155134..20155212, 20155521..20155586,20156137..20156212,20156300..20156355, 20156617..20156701,20156841..20156901,20157152..20157204, 20157323..20157393,20157478..20157550,20157651..20157755, 20157847..20158210) /locus_tag="TCM_029033" /product="Glyoxylate reductase 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g42500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002531t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016871001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01905t00001; inference alignment:Newbler:10:TSA:cgbaL_g01905t00002" CDS join(20154044..20154248,20155134..20155212, 20155521..20155586,20156137..20156212,20156300..20156355, 20156617..20156701,20156841..20156901,20157152..20157204, 20157323..20157393,20157478..20157550,20157651..20157755, 20157839..20158003) /locus_tag="TCM_029033" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002531t1" /codon_start=1 /product="Glyoxylate reductase 2 isoform 1" /protein_id="EOY27099.1" /db_xref="Phytozome:GSVIVT01016871001" /db_xref="TAIR:AT1G17650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LNP0" /translation="MTSTLLVKPNANCSYNFLSSTVMALCSTFCPRIPNNFRVTPVSS FPSKPLLSLSFKALSSQASDASSQGKFSGQIGFLGLGIMGSPMAQNLIKAGCDVTVWN RTKSKCDPFISLGAKYRSSPEEVAANCDVTFAMLADPESAIDVACGKNGVLSGMGPGK GYVDISTVDGATSKMINGHIKATGALFLEAPVSGSKKPAEDGQLIFLTAGDRSLYDSV APLLNILGKSRFYLGEVGNGAAMKLVVNMIMGSMMASFSEGLLLSKKVGLDPNVLVEV VAQGAISAPMYSVKGPSMVKSHYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANE LYKVAKAYGLSDEDFSAVIEALKAKSDDSA" CDS join(20154044..20154248,20155134..20155212, 20155521..20155586,20156137..20156212,20156300..20156355, 20156617..20156701,20156841..20156901,20157152..20157204, 20157323..20157393,20157478..20157550,20157651..20157755, 20157847..20157918) /locus_tag="TCM_029033" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002531t1" /codon_start=1 /product="Glyoxylate reductase 2 isoform 2" /protein_id="EOY27100.1" /db_xref="Phytozome:GSVIVT01016871001" /db_xref="TAIR:AT1G17650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LNP0" /translation="MTSTLLVKPNANCSYNFLSSTVMALCSTFCPRIPNNFRVTPVSS FPSKPLLSLSFKALSSQASDASSQGKFSGQIGFLGLGIMGSPMAQNLIKAGCDVTVWN RTKSKCDPFISLGAKYRSSPEEVAANCDVTFAMLADPESAIDVACGKNGVLSGMGPGK GYVDISTVDGATSKMINGHIKATGALFLEAPVSGSKKPAEDGQLIFLTAGDRSLYDSV APLLNILGKSRFYLGEVGNGAAMKLVVNMIMGSMMASFSEGLLLSKKVGLDPNVLVEV VAQGAISAPMYSVKGPSMVKSHYPTAFPLKHQQKTCFGISRICFPIHSNCSRSKRAV" mRNA join(20154074..20154248,20155132..20155212, 20155521..20155586,20156137..20156212,20156300..20156355, 20156617..20156701,20156841..20156901,20157149..20157204, 20157323..20157393,20157478..20157550,20157651..20157755, 20157839..20158226) /locus_tag="TCM_029033" /product="Glyoxylate reductase 2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g42500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002531t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016871001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4644t2; inference alignment:Newbler:10:TSA:cgbaL_g01905t00002" CDS join(20155175..20155212,20155521..20155586, 20156137..20156212,20156300..20156355,20156617..20156701, 20156841..20156901,20157149..20157204,20157323..20157393, 20157478..20157550,20157651..20157755,20157839..20158003) /locus_tag="TCM_029033" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG002531t1" /codon_start=1 /product="Glyoxylate reductase 2 isoform 3" /protein_id="EOY27101.1" /db_xref="Phytozome:GSVIVT01016871001" /db_xref="TAIR:AT1G17650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LNP0" /translation="MGSPMAQNLIKAGCDVTVWNRTKSKCDPFISLGAKYRSSPEEVA ANCDVTFAMLADPESAIDVACGKNGVLSGMGPGKGYVDISTVDGATSKMINGHIKATG ALFLEAPVSGSKKPAEDGQLIFLTAAGDRSLYDSVAPLLNILGKSRFYLGEVGNGAAM KLVVNMIMGSMMASFSEGLLLSKKVGLDPNVLVEVVAQGAISAPMYSVKGPSMVKSHY PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKAYGLSDEDFSAVIEALK AKSDDSA" gene complement(20158687..20163954) /locus_tag="TCM_029034" /note="dbxref CacaoGD:Thecc1EG029034" mRNA complement(join(20158687..20160584,20160668..20160818, 20161281..20161393,20161473..20161581,20161768..20161877, 20162002..20162166,20163583..20163877)) /locus_tag="TCM_029034" /product="Transmembrane nine 7 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s03090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037051t1" /inference="similar to AA sequence:ricco:28694.m000673" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc200t15" mRNA complement(join(20158814..20160584,20160668..20160818, 20161281..20161393,20161473..20161581,20161768..20161877, 20162002..20162166,20162673..20162727,20163583..20163610)) /locus_tag="TCM_029034" /product="Transmembrane nine 7 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s03090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037051t1" /inference="similar to AA sequence:ricco:28694.m000673" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc197t9; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc197t9; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc200t15" CDS complement(join(20159427..20160584,20160668..20160818, 20161281..20161393,20161473..20161581,20161768..20161877, 20162002..20162166,20163583..20163684)) /locus_tag="TCM_029034" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28694.m000673; paralog of Thecc1EG037051t1" /codon_start=1 /product="Transmembrane nine 7 isoform 1" /protein_id="EOY27102.1" /db_xref="TAIR:AT3G13772.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIC2" /translation="MGTKRKTLFFAFLLLLSTAHSFYLPGVAPRDFQMGNPLSVKVNK LSSTKTQLPYDYYYLNYCKPSKIVNSAENLGEVLRGDRIENSIYTFDMREDQPCKAVC RKKLDAESAKNFKEKIDDEYRVNMILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNY AGSKEEKYFINNHLSFRVMFHRDTETDAARIVGFEVTPNSINHEYKEWDEKNPQITTC NKDTKNLIQGSTVPQEVDVGKEVVFTYDVTFKESDIKWASRWDTYLLMNDDQIHWFSI INSLMIVLFLSGMVAMIMMRTLYKDIANYNQLETQDEAQEETGWKLVHGDAFRAPINY GLLCVYVGTGVQILAMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGIFAGYSSAR LYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVCLWF GISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQIPEQAWYMKPVFSILIGGILPFGAVF IELFFILTSIWLNQFYYIFGFLFIVFIILIITCAEITIVLCYFQLCSEDYHWWWRSYL TAGSSALYLFLYSVFYFFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWF VRKIYSSVKID" CDS complement(join(20159427..20160584,20160668..20160818, 20161281..20161393,20161473..20161581,20161768..20161877, 20162002..20162166,20162673..20162675)) /locus_tag="TCM_029034" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28694.m000673; paralog of Thecc1EG037051t1" /codon_start=1 /product="Transmembrane nine 7 isoform 2" /protein_id="EOY27103.1" /db_xref="TAIR:AT3G13772.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIC2" /translation="MGNPLSVKVNKLSSTKTQLPYDYYYLNYCKPSKIVNSAENLGEV LRGDRIENSIYTFDMREDQPCKAVCRKKLDAESAKNFKEKIDDEYRVNMILDNLPVAV LRQRRDGSQSTTYEHGFRVGFKGNYAGSKEEKYFINNHLSFRVMFHRDTETDAARIVG FEVTPNSINHEYKEWDEKNPQITTCNKDTKNLIQGSTVPQEVDVGKEVVFTYDVTFKE SDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYKDIANYNQLE TQDEAQEETGWKLVHGDAFRAPINYGLLCVYVGTGVQILAMTLVTMIFALLGFLSPSN RGGLMTAMVLLWVFMGIFAGYSSARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLN ALIWGEQSSGAVPFGTMFALVCLWFGISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQI PEQAWYMKPVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFIILIITC AEITIVLCYFQLCSEDYHWWWRSYLTAGSSALYLFLYSVFYFFTKLEITKLVSGILYF GYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID" mRNA complement(join(<20159430..20160584,20160668..20160818, 20161281..20161581,20161768..20161877,20162002..20162166, 20163583..20163954)) /locus_tag="TCM_029034" /product="Transmembrane nine 7 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s03090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036903t1" /inference="similar to AA sequence:ricco:28694.m000673" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc200t13; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc197t9; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc200t15" CDS complement(join(<20159430..20160584,20160668..20160818, 20161281..20161435)) /locus_tag="TCM_029034" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:28694.m000673; paralog of Thecc1EG036903t1" /codon_start=1 /product="Transmembrane nine 7 isoform 5" /protein_id="EOY27106.1" /db_xref="TAIR:AT3G13772.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIC2" /translation="MCFLFILIIYMPLQSKEEKYFINNHLSFRVMFHRDTETDAARIV GFEVTPNSINHEYKEWDEKNPQITTCNKDTKNLIQGSTVPQEVDVGKEVVFTYDVTFK ESDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYKDIANYNQL ETQDEAQEETGWKLVHGDAFRAPINYGLLCVYVGTGVQILAMTLVTMIFALLGFLSPS NRGGLMTAMVLLWVFMGIFAGYSSARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVL NALIWGEQSSGAVPFGTMFALVCLWFGISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQ IPEQAWYMKPVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFIILIIT CAEITIVLCYFQLCSEDYHWWWRSYLTAGSSALYLFLYSVFYFFTKLEITKLVSGILY FGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID" mRNA complement(join(<20159488..20160584,20160668..20160818, 20161281..20161581,20161768..20161877,20162002..20162166, 20162673..20162727,20163583..20163610)) /locus_tag="TCM_029034" /product="Transmembrane nine 7 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s03090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036903t1" /inference="similar to AA sequence:ricco:28694.m000673" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc197t5; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc197t9; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc200t15" CDS complement(join(<20159490..20160584,20160668..20160818, 20161281..20161435)) /locus_tag="TCM_029034" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28694.m000673; paralog of Thecc1EG036903t1" /codon_start=1 /product="Transmembrane nine 7 isoform 3" /protein_id="EOY27104.1" /db_xref="TAIR:AT3G13772.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIC2" /translation="MCFLFILIIYMPLQSKEEKYFINNHLSFRVMFHRDTETDAARIV GFEVTPNSINHEYKEWDEKNPQITTCNKDTKNLIQGSTVPQEVDVGKEVVFTYDVTFK ESDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYKDIANYNQL ETQDEAQEETGWKLVHGDAFRAPINYGLLCVYVGTGVQILAMTLVTMIFALLGFLSPS NRGGLMTAMVLLWVFMGIFAGYSSARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVL NALIWGEQSSGAVPFGTMFALVCLWFGISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQ IPEQAWYMKPVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFIILIIT CAEITIVLCYFQLCSEDYHWWWRSYLTAGSSALYLFLYSVFYFFTKLEITKLVSGILY FGYMVIVSYAFFVLTGT" mRNA complement(join(<20159874..20160584,20160668..20160818, 20161281..20161393,20161473..20161581,20161768..20161877, 20162002..20162166,20163583..20163954)) /locus_tag="TCM_029034" /product="Transmembrane nine 7 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s03090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037051t1" /inference="similar to AA sequence:ricco:28694.m000673" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc200t21; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc200t15; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc197t9" CDS complement(join(<20159874..20160584,20160668..20160818, 20161281..20161393,20161473..20161581,20161768..20161877, 20162002..20162166,20163583..20163684)) /locus_tag="TCM_029034" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:28694.m000673; paralog of Thecc1EG037051t1" /codon_start=1 /product="Transmembrane nine 7 isoform 4" /protein_id="EOY27105.1" /db_xref="TAIR:AT3G13772.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIC2" /translation="MGTKRKTLFFAFLLLLSTAHSFYLPGVAPRDFQMGNPLSVKVNK LSSTKTQLPYDYYYLNYCKPSKIVNSAENLGEVLRGDRIENSIYTFDMREDQPCKAVC RKKLDAESAKNFKEKIDDEYRVNMILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNY AGSKEEKYFINNHLSFRVMFHRDTETDAARIVGFEVTPNSINHEYKEWDEKNPQITTC NKDTKNLIQGSTVPQEVDVGKEVVFTYDVTFKESDIKWASRWDTYLLMNDDQIHWFSI INSLMIVLFLSGMVAMIMMRTLYKDIANYNQLETQDEAQEETGWKLVHGDAFRAPINY GLLCVYVGTGVQILAMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGIFAGYSSAR LYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVCLWF GISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQIPEQA" gene complement(20165212..20172536) /locus_tag="TCM_029035" /note="dbxref CacaoGD:Thecc1EG029035" mRNA complement(join(20165212..20165646,20166122..20166221, 20166657..20166736,20166908..20166982,20167107..20167218, 20167438..20167511,20168632..20168713,20168916..20169141, 20170079..20170154,20170452..20170526,20170675..20170740, 20171089..20171151,20171286..20171372,20171855..20171918, 20172289..20172536)) /locus_tag="TCM_029035" /product="Transducin family protein / WD-40 repeat family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s06840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037659t1" /inference="similar to AA sequence:ricco:28694.m000672" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00125t00004" CDS complement(join(20165557..20165646,20166122..20166221, 20166657..20166736,20166908..20166982,20167107..20167218, 20167438..20167511,20168632..20168713,20168916..20169141, 20170079..20170154,20170452..20170526,20170675..20170740, 20171089..20171151,20171286..20171372,20171855..20171918, 20172289..20172380)) /locus_tag="TCM_029035" /note="dbxref ricco:28694.m000672; paralog of Thecc1EG037659t1" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein" /protein_id="EOY27107.1" /db_xref="TAIR:AT2G19520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22607" /translation="MKALNGSLWCLSSTIGSLITTSFGLLSLAGPWGPQLEQATYKNR QRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGE VNRIRELPQNSKIVATHTDSPDVLIWDLEAQPNRHAVLGATDSRPDLILTGHQDDAEF ALAMCPTEPFVLSGGKDKSVVLWSIHDQISTLAMEPGPTKSPGSTGTSTKHASKGGGN NDKPVDGPVIGPRGIYQGHEDTVEDVQFCPSSTQEFCSVGDDSCLILWDARAGVTPAV KVEKAHNADLHCVDWNPHDVNLILTGSADNTVHMFDRRNLTSGGIGSPVHKFEGHSAA VLCVQWSPDKSSVFGSSAEDGILNIWDHEKIGKKQDTAGSRAANAPPGLFFQHAGHRD KVVDFHWNASDPWTIVSVSDDCESTNGGGTLQMWRMIDLIYRPAEEVLAELDKFKSHI LAC" mobile_element complement(20167251..20167350) /note="source:scaffold_1_CACTA_0011 7446 7530" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20173439..20173788) /note="source:CACAO_on_E565_scaffold_5 13503 13848" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 20174186..20180474 /locus_tag="TCM_046839" /note="dbxref CacaoGD:Thecc1EG046839" mRNA join(20174186..20174722,20174893..20175385, 20176910..20176953,20177220..20177315,20178230..20178322, 20178524..20178611,20178701..20178762,20178850..20179037, 20179120..20179297,20179394..20179437,20179780..20179978, 20180203..20180474) /locus_tag="TCM_046839" /product="Nucleosome assembly protein 1,2, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s01560.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037641t3" /inference="similar to AA sequence:Phytozome:GSVIVT01015187001" /note="transcript variant 2; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4659t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4659t1; inference alignment:Newbler:10:TSA:cgbaP2_g08381t00001" gene 20174186..20175557 /locus_tag="TCM_046838" /note="dbxref CacaoGD:Thecc1EG046838" mRNA join(20174186..20174722,20174893..20175557) /locus_tag="TCM_046838" /product="SMAD/FHA domain-containing protein, putative" /inference="alignment:exonerate- protein:2:ricco:29706.m001349" /inference="similar to AA sequence:frave:gene07333" /note="quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc170t9_C1" CDS join(20174302..20174722,20174893..20175389) /locus_tag="TCM_046838" /note="dbxref frave:gene07333" /codon_start=1 /product="SMAD/FHA domain-containing protein, putative" /protein_id="EOY27111.1" /db_xref="TAIR:AT3G13780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7L1I6" /translation="MEIEGANGSKLALKYGFKTVFGRGSGFNTSDRTVSRHHVLLELG TPVDKKGETQKEPRVSFEVTGKNPVWVRSRTNGAIKVFKNSDKDELADGDWLCVSSRI PVWFVLKKSEENGKEEEGDLGSESGAEIVDIEDIDPVKEFGFLVMGHEFDQYPNQSIR NIKNWDWFLEESGKDSEDDDEAGGERRRGRKGSKRRKGDNDDDWTGESEDDKEVNAKG RKVQRAVYSTRSKERDKSKKDSGGKNRSSVRKKSVSAGEGNGADEDDETLGGFIVEDD DAELEEESELDEEEEEDFDDADEDNEDDE" CDS join(20175331..20175385,20176910..20176953, 20177220..20177315,20178230..20178322,20178524..20178611, 20178701..20178762,20178850..20179037,20179120..20179297, 20179394..20179437,20179780..20179978,20180203..20180271) /locus_tag="TCM_046839" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037641t3" /codon_start=1 /product="Nucleosome assembly protein 1,2, putative isoform 2" /protein_id="EOY27109.1" /db_xref="Phytozome:GSVIVT01015187001" /db_xref="TAIR:AT2G19480.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q53WK4" /translation="MKKRRKILMMQMRTTRMMTLSAEDRAGLVNALKNKLQSLAGQHN DILETLSPNVRKRVEVLRETQSEHDELEKKFFEERAALEAKYEKFYEPLYTKRYEIVN GVLKVEGETNEAVIDGGGNKSAEEKGVPDFWLTAMKSNEMLADKISERDEGALKYLKD IKWGRINDPKGFKLEFFFDSNPYFKNSVLAKTYHVVDDENEPILEKAIGTKIEWYPGK CLTQKVLKKKPKKGSKIVKPITKTENCNSFFNFFNPPQIPDDDDDIDDELAEELQDRM EHDYNIGSTIRDKLIPHAVSWFTGEAVQGNEYDGLEGDFDDSDDEDGDDEEDEDGDKE EDEEDEEEEGKGKKKRNGSAKAGRGQQGELPPLCQQQ" mRNA join(20176555..20176710,20176910..20176953, 20177220..20177315,20178230..20178322,20178524..20178611, 20178701..20178762,20178850..20179037,20179120..20179297, 20179394..20179437,20179780..20179978,20180203..20180474) /locus_tag="TCM_046839" /product="Nucleosome assembly protein 1,2, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s01560.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037641t3" /inference="similar to AA sequence:Phytozome:GSVIVT01015187001" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4659t3; inference alignment:Newbler:10:TSA:cgbaP2_g08381t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4659t1" CDS join(20176641..20176710,20176910..20176953, 20177220..20177315,20178230..20178322,20178524..20178611, 20178701..20178762,20178850..20179037,20179120..20179297, 20179394..20179437,20179780..20179978,20180203..20180271) /locus_tag="TCM_046839" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037641t3" /codon_start=1 /product="Nucleosome assembly protein 1,2, putative isoform 1" /protein_id="EOY27108.1" /db_xref="Phytozome:GSVIVT01015187001" /db_xref="TAIR:AT2G19480.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q53WK4" /translation="MSNDNADNVDVSDLRAALPAAAAALSAEDRAGLVNALKNKLQSL AGQHNDILETLSPNVRKRVEVLRETQSEHDELEKKFFEERAALEAKYEKFYEPLYTKR YEIVNGVLKVEGETNEAVIDGGGNKSAEEKGVPDFWLTAMKSNEMLADKISERDEGAL KYLKDIKWGRINDPKGFKLEFFFDSNPYFKNSVLAKTYHVVDDENEPILEKAIGTKIE WYPGKCLTQKVLKKKPKKGSKIVKPITKTENCNSFFNFFNPPQIPDDDDDIDDELAEE LQDRMEHDYNIGSTIRDKLIPHAVSWFTGEAVQGNEYDGLEGDFDDSDDEDGDDEEDE DGDKEEDEEDEEEEGKGKKKRNGSAKAGRGQQGELPPLCQQQ" mRNA join(<20179098..20179108,20179780..20179978, 20180203..20180474) /locus_tag="TCM_046839" /product="Nucleosome assembly protein 1,2, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s01560.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4659t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4659t1; inference alignment:Newbler:10:TSA:cgbaP2_g08381t00001" CDS join(<20179098..20179108,20179780..20179978, 20180203..20180271) /locus_tag="TCM_046839" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Nucleosome assembly protein 1,2, putative isoform 3" /protein_id="EOY27110.1" /db_xref="TAIR:AT2G19480.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q53WK4" /translation="YNIGSTIRDKLIPHAVSWFTGEAVQGNEYDGLEGDFDDSDDEDG DDEEDEDGDKEEDEEDEEEEGKGKKKRNGSAKAGRGQQGELPPLCQQQ" gene complement(20183546..20187306) /locus_tag="TCM_029039" /note="dbxref CacaoGD:Thecc1EG029039" mRNA complement(join(20183546..20184190,20184723..20184813, 20184909..20185147,20185341..20185499,20185743..20186605, 20186791..20186799,20187034..20187249)) /locus_tag="TCM_029039" /product="Glycosyl hydrolases family 32 protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016869001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037304t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016869001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4739t1" mRNA complement(join(20183802..20184190,20184723..20185147, 20185341..20185499,20185743..20186605,20186791..20186799, 20187034..20187306)) /locus_tag="TCM_029039" /product="Glycosyl hydrolases family 32 protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016869001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022647t1" /inference="similar to AA sequence:frave:gene23034" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc677t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4739t1" mRNA complement(join(20183944..20184186,20184724..20184813, 20184909..20185147,20185341..20185499,20185743..20186605, 20186791..20186799,20187034..20187306)) /locus_tag="TCM_029039" /product="Glycosyl hydrolases family 32 protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016869001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037304t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016869001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc627t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4739t1" CDS complement(join(20184002..20184190,20184723..20184813, 20184909..20185147,20185341..20185499,20185743..20186605, 20186791..20186799,20187034..20187223)) /locus_tag="TCM_029039" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037304t1" /codon_start=1 /product="Glycosyl hydrolases family 32 protein isoform 1" /protein_id="EOY27112.1" /db_xref="Phytozome:GSVIVT01016869001" /db_xref="TAIR:AT3G13790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67XZ3" /translation="MLNMAHSFVGFCLFFALLFGHGVVELEASHHVYKNLQTDQSTAS ANQPYRTGYHFQPPKNWINDPNGPMVYKGLYHLFYQYNPKGAVWGNIVWAHSTSKDLV NWTPHDPAIYPSQPSDINGCWSGSATILPDGKPAILYTGIDPQDKQVQNLAMPKNLSD PYLREWIKSSKNPLMQPTAQNQINASSFRDPTTAWLGPDKKWRLIIGSKIHRQGLAIL YKSEDFVHWIQAQSPLHSAKDTGMWECPDFFPVSVRGQNGVDISVNGPFVKHVLKVSL DDTKHEYYTLGSYDIVKDIYTPDKGSVESDSGLRYDYGKFYASKTFFDTAKHRRILWG WINESSSVHDDVKKGWAGVQAIPRKLWLSKSGKQLVQWPIVEIQKLRSNHLRLPSKLL KGGSEIEVSGVTAAQADVDISFKVTDFEKAEVLKPSWTNPQLLCSQQGASVKGGLGPF GLLVLASEGLKENTAVFFRIFKGQNKYVVLMCSDQSRSSLNEDNDKTTYGAFLDVDPE HQYLSLRSLIDHSIVESFGGGGKACITARVYPTLAINNAAHLYVFNNGSEAVEIAELN AWSMKKAKLNLKD" CDS complement(join(20184132..20184186,20184724..20184813, 20184909..20185147,20185341..20185499,20185743..20186605, 20186791..20186799,20187034..20187223)) /locus_tag="TCM_029039" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037304t1" /codon_start=1 /product="Glycosyl hydrolases family 32 protein isoform 2" /protein_id="EOY27113.1" /db_xref="Phytozome:GSVIVT01016869001" /db_xref="TAIR:AT3G13790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67XZ3" /translation="MLNMAHSFVGFCLFFALLFGHGVVELEASHHVYKNLQTDQSTAS ANQPYRTGYHFQPPKNWINDPNGPMVYKGLYHLFYQYNPKGAVWGNIVWAHSTSKDLV NWTPHDPAIYPSQPSDINGCWSGSATILPDGKPAILYTGIDPQDKQVQNLAMPKNLSD PYLREWIKSSKNPLMQPTAQNQINASSFRDPTTAWLGPDKKWRLIIGSKIHRQGLAIL YKSEDFVHWIQAQSPLHSAKDTGMWECPDFFPVSVRGQNGVDISVNGPFVKHVLKVSL DDTKHEYYTLGSYDIVKDIYTPDKGSVESDSGLRYDYGKFYASKTFFDTAKHRRILWG WINESSSVHDDVKKGWAGVQAIPRKLWLSKSGKQLVQWPIVEIQKLRSNHLRLPSKLL KGGSEIEVSGVTAAQADVDISFKVTDFEKAEVLKPSWTNPQLLCSQQGASVKGGLGPF GLLVLASEGLKENTAVFFRIFKGQNKYVVLMCSDQSRSSLNEDNDKTTYGAFLDVDPE HQYLSLRSLSFHSGELWWRWQSLHHS" CDS complement(join(20184896..20185147,20185341..20185499, 20185743..20186605,20186791..20186799,20187034..20187223)) /locus_tag="TCM_029039" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene23034; paralog of Thecc1EG022647t1" /codon_start=1 /product="Glycosyl hydrolases family 32 protein isoform 3" /protein_id="EOY27114.1" /db_xref="TAIR:AT3G13790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67XZ3" /translation="MLNMAHSFVGFCLFFALLFGHGVVELEASHHVYKNLQTDQSTAS ANQPYRTGYHFQPPKNWINDPNGPMVYKGLYHLFYQYNPKGAVWGNIVWAHSTSKDLV NWTPHDPAIYPSQPSDINGCWSGSATILPDGKPAILYTGIDPQDKQVQNLAMPKNLSD PYLREWIKSSKNPLMQPTAQNQINASSFRDPTTAWLGPDKKWRLIIGSKIHRQGLAIL YKSEDFVHWIQAQSPLHSAKDTGMWECPDFFPVSVRGQNGVDISVNGPFVKHVLKVSL DDTKHEYYTLGSYDIVKDIYTPDKGSVESDSGLRYDYGKFYASKTFFDTAKHRRILWG WINESSSVHDDVKKGWAGVQAIPRKLWLSKSGKQLVQWPIVEIQKLRSNHLRLPSKLL KGGSEIEVSGVTAAQADVDISFKVTDFEKAEVLKPSWTNPQLLCSQQGASVKGGLGPF GLLVLASEGLKENTAVFFRIFKGQNKYVVLMCSDQSRSSP" mobile_element 20191900..20194624 /note="source:CACAO_M_E10243_F73_scaffold_2 1 2719" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20198673..20200692) /locus_tag="TCM_029040" /note="dbxref CacaoGD:Thecc1EG029040" mRNA complement(join(20198673..20199763,20199913..20200040, 20200301..20200692)) /locus_tag="TCM_029040" /product="HXXXD-type acyl-transferase family protein" /inference="alignment:exonerate- protein:2:frave:gene23879.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029042t1" /inference="similar to AA sequence:ricco:29644.m000175" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02570t00002" CDS complement(join(20198887..20199763,20199913..20200040, 20200301..20200357)) /locus_tag="TCM_029040" /note="dbxref ricco:29644.m000175; paralog of Thecc1EG029042t1" /codon_start=1 /product="HXXXD-type acyl-transferase family protein" /protein_id="EOY27115.1" /db_xref="TAIR:AT3G50270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWR1" /translation="MHTDIEEYTSNFGLYANMKALDHLPPLAGRLATIEHDNDPFPFP LTALMLGLALSMQQLMMSVSINHTVIDGASFFHFFSSWLETARGSSCLSKQPIFQRWF LNATDCPIRIPHSYINHIDKNEFSPSVPVKVRVFHFTKEVIAILKEKANAEVGTHEIS SLQALSSHFWQSVVRNKKNIDPDEATSYCLLIGSRQRLQELSEGYFGNALEVGIVTMK AKELLDHGLGNAAWEMNKVVASCNMKKLSNFLESWTKCPKIKKMSNMVRNAIGTSDSP RFDIYGGDTGLGRPVAIRSGPANKFDGRITVHCGVEEGSIDIEVCLSLETFQAMEKDK EFMDTVSIKSNWPSKTFKG" mobile_element complement(20202115..20202166) /note="source:scaffold_4_CACTA_0502 195 245" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20208602..20210460 /note="source:CACAO_M_E49231_F4_scaffold_6 1 1859" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20211427..20212848 /note="source:CACAO_M_S_E65557_F9_scaffold_5 1 1447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20212850..20212984 /note="source:INTACT1232F_F375_scaffold_6-int 1 135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20222604..20225215) /note="source:INTACT257_F186_scaffold_6-int 17148 18869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20225967..20226016) /note="source:CACAO_PIF_E62_scaffold_2 6946 6995" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(20226251..20226262) /note="source:CACAO_hAT_E71_scaffold_1 864 945" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(20226263..20226658) /note="source:CACAO_on_SS_E42_scaffold_2 24132 24525" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(20226659..20226702) /note="source:CACAO_hAT_E71_scaffold_1 524 863" /mobile_element_type="transposon:TIR/hAT" mobile_element 20226696..20226811 /note="source:CACAO_hAT_E410_scaffold_1 4762 4866" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(20226802..20226856) /note="source:INTACT146F_F14_scaffold_2-int 13434 13491" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20227126..20228082) /note="source:CACAO_MITE_S250_scaffold_10 1 943" /mobile_element_type="transposon:TIR/MITE" gene complement(20228409..20230301) /locus_tag="TCM_029042" /note="dbxref CacaoGD:Thecc1EG029042" mRNA complement(20228409..20230301) /locus_tag="TCM_029042" /product="HXXXD-type acyl-transferase family protein, putative" /inference="alignment:exonerate- protein:2:frave:gene23879.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000656t1" /inference="similar to AA sequence:ricco:29644.m000175" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1546t2" CDS complement(20228939..20230273) /locus_tag="TCM_029042" /note="dbxref ricco:29644.m000175; paralog of Thecc1EG000656t1" /codon_start=1 /product="HXXXD-type acyl-transferase family protein, putative" /protein_id="EOY27116.1" /db_xref="TAIR:AT5G67150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWR1" /translation="MASIRVISTSMVQAENHDEQQAQKMDLTPWDLQFLLAEYIQRGL LYQIPEVPDVYDQEEEIGNIVVFYMKMFLSSTLSYFAPLAGRLSTTEHDGNTVSFSID CNNAGALFVHAVADGVTTSNIIQPAYIPAVVDSFFPLNGIKNYQGTSNPLLAVQVTEL VDGFFISVSVNHSIVDGASFFHFFNSWLAIACDPTQLSKPPVFQRDFFKDIDFPIRLP RSYFHQTHDKFIPPPLRVRVFHFSRENVAKLKAKANSEVGTKDISSLQALLSHLWRAV IRNRKADPDEETNYCLMISGRPKLQQLPERYFGNVLQVGAITMKVKELLDLGLGNAAR QMNKVVAAHNEEMFKNFLKTWMETPKLRTMGNMVSNSLVTSDSPRFNIYGGETGLGTP IAIRSGPANKFDGRVTVHCGVEEGSIDIEICLAPATFGAMENDNEFMDAVTL" mobile_element complement(20231897..20232156) /note="source:scaffold_4_CACTA_0482 3472 3713" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20232197..20232249 /note="source:scaffold_2_CACTA_0277 2211 2267" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20232254..20233098 /note="source:scaffold_5_CACTA_0612 13 190" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20233265..20235648 /note="source:CACAO_M_E53135_F19_scaffold_8 2 2337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20233909..20236704) /note="source:INTACT228_F18_scaffold_4-int 1 2904" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20239107..20244429 /locus_tag="TCM_029044" /note="dbxref CacaoGD:Thecc1EG029044" mRNA join(20239107..20239530,20240352..20240464, 20240845..20240886,20241967..20242022,20242170..20242246, 20242714..20242833,20243126..20243202,20243320..20243383, 20243491..20243541,20243633..20243681,20243899..20244429) /locus_tag="TCM_029044" /product="Catalytic, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016868001" /inference="similar to AA sequence:ricco:28694.m000661" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b028085t1a2; inference alignment:Newbler:10:TSA:cgbaL_g00642t00001" mRNA join(20239107..20239530,20240105..20240232, 20240352..20240464,20240845..20240886,20241967..20242022, 20242170..20242246,20242714..20242833,20243126..20243202, 20243320..20243383,20243491..20243541,20243633..20243681, 20243899..20244289) /locus_tag="TCM_029044" /product="Catalytic, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016868001" /inference="similar to AA sequence:Phytozome:GSVIVT01016868001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00642t00001" mRNA join(20239161..20239530,20240105..20240232, 20240352..20240464,20240845..20240886,20241967..20242022, 20242170..20242246,20242714..20242833,20243126..20243234, 20243320..20243345) /locus_tag="TCM_029044" /product="Metallo-hydrolase/oxidoreductase superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016868001" /inference="similar to AA sequence:Phytozome:GSVIVT01016868001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1250t5; inference alignment:Newbler:10:TSA:cgbaL_g00642t00001" CDS join(20239362..20239530,20240105..20240232, 20240352..20240464,20240845..20240886,20241967..20242022, 20242170..20242246,20242714..20242833,20243126..20243202, 20243320..20243383,20243491..20243541,20243633..20243681, 20243899..20244017) /locus_tag="TCM_029044" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Catalytic, putative isoform 1" /protein_id="EOY27117.1" /db_xref="Phytozome:GSVIVT01016868001" /db_xref="TAIR:AT3G13800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SN26" /translation="MVALSMVPFLGTVRYTPSLTSLTPYKRKISIQNTPISFPRNGFF PIRRFLQACLQSSFASEDAGARLPAEQSEIIFMGTGTSEGIPRVSCLTDPVKKCPVCT KAAELGNKNRRLNTSILIRNSKPSGSCNILIDAGKFFYHSALRWFPAFGIRTIDAVII THSHADAIGGLDDLRDWTNNVQPHIPIYVANRDFEVMKKTHYYLVDTSVIVPGAAVSE LQFNIIHEEPFIVHDLQVTPLPVWHGRGYRSLGFRFGNICYISDVSEIPEETYPLLEN CEILILDALRPDRSSSTHFGLPRALEEVRKIKPKRTLLTGMMHLMDHEIVNDYLIKLM ESEGLDVQLSYDGLRVPITL" CDS join(20239362..20239530,20240105..20240232, 20240352..20240464,20240845..20240886,20241967..20242022, 20242170..20242246,20242714..20242833,20243126..20243206) /locus_tag="TCM_029044" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Metallo-hydrolase/oxidoreductase superfamily protein isoform 3" /protein_id="EOY27119.1" /db_xref="Phytozome:GSVIVT01016868001" /db_xref="TAIR:AT3G13800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SN26" /translation="MVALSMVPFLGTVRYTPSLTSLTPYKRKISIQNTPISFPRNGFF PIRRFLQACLQSSFASEDAGARLPAEQSEIIFMGTGTSEGIPRVSCLTDPVKKCPVCT KAAELGNKNRRLNTSILIRNSKPSGSCNILIDAGKFFYHSALRWFPAFGIRTIDAVII THSHADAIGGLDDLRDWTNNVQPHIPIYVANRDFEVMKKTHYYLVDTSVIVPGAAVSE LQFNIIHEEPFIVHDLQVTPLPVWHGRGYRSLGFRFGNICYIR" CDS join(20239483..20239530,20240352..20240464, 20240845..20240886,20241967..20242022,20242170..20242246, 20242714..20242833,20243126..20243202,20243320..20243383, 20243491..20243541,20243633..20243681,20243899..20244017) /locus_tag="TCM_029044" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28694.m000661" /codon_start=1 /product="Catalytic, putative isoform 2" /protein_id="EOY27118.1" /db_xref="TAIR:AT3G13800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SN26" /translation="MGSSQSGGFFKLAFNLVCTKAAELGNKNRRLNTSILIRNSKPSG SCNILIDAGKFFYHSALRWFPAFGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQPHI PIYVANRDFEVMKKTHYYLVDTSVIVPGAAVSELQFNIIHEEPFIVHDLQVTPLPVWH GRGYRSLGFRFGNICYISDVSEIPEETYPLLENCEILILDALRPDRSSSTHFGLPRAL EEVRKIKPKRTLLTGMMHLMDHEIVNDYLIKLMESEGLDVQLSYDGLRVPITL" gene 20251076..20268590 /locus_tag="TCM_029045" /note="dbxref CacaoGD:Thecc1EG029045" mRNA join(20251076..20251818,20251955..20252351, 20252868..20253534,20253605..20253622,20253733..20253979, 20258776..20258871,20259583..20259833,20260286..20260390, 20260658..20260853,20261359..20261447,20261645..20261725, 20262473..20262567,20263137..20263207,20263718..20263808, 20263880..20263997,20264079..20264174,20264259..20264307, 20265317..20265504,20265612..20265683,20265844..20265993, 20266429..20266479,20266942..20267107,20267294..20267439, 20267574..20267639,20267901..20268453,20268559..20268590) /locus_tag="TCM_029045" /product="Beta-galactosidase 17" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016865001" /inference="similar to AA sequence:Phytozome:Glyma13g42560.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04410t00001" CDS join(20251614..20251818,20251955..20252351, 20252868..20253534,20253605..20253622,20253733..20253979, 20258776..20258871,20259583..20259833,20260286..20260390, 20260658..20260853,20261359..20261447,20261645..20261725, 20262473..20262567,20263137..20263207,20263718..20263808, 20263880..20263997,20264079..20264174,20264259..20264307, 20265317..20265504,20265612..20265683,20265844..20265993, 20266429..20266479,20266942..20267107,20267294..20267439, 20267574..20267639,20267901..20268005) /locus_tag="TCM_029045" /codon_start=1 /product="Beta-galactosidase 17" /protein_id="EOY27120.1" /db_xref="Phytozome:Glyma13g42560.1" /db_xref="TAIR:AT1G72990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U012" /translation="MMKGLLFHDQQQQVLEENMSNLTSASGEASVSSGNRAEAATNYP QQYFSTPPPETQPAKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQN LQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHG EKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEE SARAITGANPLLSSHQPGASASHINLQVPQFNAQDIQAFSLKKEQQSFSLRPEIPPWL SSQPMLGAGPGPPPQPIDLSSSSSSIFSARLDHHHQEFTQTTHHQDLTHHVNPNPNPT SLGPTLPAYHPTTVPSPHMSATALLQKAAQMGATMSSKTGSSSAPATAAAASLIRPHQ QAHVSADSAGSNNNTTTAVFGLNLSSREELAVIMLAQTKDGRFINETFSSTTTTPTTT TNAAAAARNDHETGGIQGEGLTRDFLGLRAFSHSDILNLAGLSNCMNTSHEQRNQSQK PWQVVDSPKFEAVHIALLAAPSAGTGSGYFYLPGTTDSLKAEEMNHSKKLAATESTSK STAAMARKRSSKTTLIFFVLLSIVAFVAFVPVFASLPSLSSHSHDLHLHLRLHQRQHR LEKSDARKFEIAEDMFWKDGKPFQIIGGDLHYFRILPEYWEDRLLRAKALGLNTIQTY IPWNLHEPEPGKLVFEGIADLVSFLKLCQKLGLLVMLRAGPYICAEWDLGGFPAWLLA IEPDIRLRSSDPAYLQLVEGWWGVLLPKVAPLLYGNGGPIIMVQIENEFGSYGDDKAY LRHLVKLARGHLGEDIILYTTDGGSRETLEKGTLVGDDVFSAVDFTTGDDPWPIFELQ KEFNSPGKSPPLSSEFYTGWLTHWGEKIARTDADFTAAALEKILSRNGSVVLYMAHGG TNFGFYNGANTGADESDYKPDLTSYDYDAPITESGDVDNAKFKAIRRVVGKYSSVSLP SFPSSNKKTGYGFIQLQKTRSLFDLLDGFDSAHIVEAENPTAMEYFYQMFGFLLYVSE YASKAGGNKLFIPKVHDRAQVFISCPSRADGGRVSYVGTIERWSNQAIYLPNAKCVSN TSLFILVENMGRVNYGPYLFDRKGILSSVYVDGRVLNRWKMIPIPFQNLNEVPKFNPV IQVASEFPKVSIRKKLEHKSEDVLEGPSFYTGHFSIDKTSEVTDTFISFRAWGKGIAF VNEFNIGRYWPTSGPQCNLYIPAPILRHGENVLVIFELESPNPELVVDSVDQQDFNCG SSKASVRQL" mobile_element complement(20255617..20255673) /note="source:scaffold_5_CACTA_0612 5432 5487" /mobile_element_type="transposon:TIR/CACTA" gene complement(20268527..20270630) /locus_tag="TCM_029047" /note="dbxref CacaoGD:Thecc1EG029047" mRNA complement(join(20268527..20268924,20270433..20270630)) /locus_tag="TCM_029047" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1644t2" CDS complement(20268712..20268912) /locus_tag="TCM_029047" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27121.1" /translation="MAVKPTVALRAVLVGGIAVFAKVAGAMKAAGGAKLGAAAAAMTV AASAALSGSKQDSKDESKQTSK" gene 20270746..20273160 /locus_tag="TCM_029049" /note="dbxref CacaoGD:Thecc1EG029049" mRNA join(20270746..20271020,20271119..20271181, 20271284..20271364,20271690..20271748,20271818..20271901, 20272874..20273160) /locus_tag="TCM_029049" /product="COP9 signalosome complex subunit 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016863001" /inference="similar to AA sequence:Phytozome:POPTR_0003s04510.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16142t1" CDS join(20270793..20271020,20271119..20271181, 20271284..20271364,20271690..20271748,20271818..20271875) /locus_tag="TCM_029049" /codon_start=1 /product="COP9 signalosome complex subunit 7" /protein_id="EOY27122.1" /db_xref="Phytozome:POPTR_0003s04510.1" /db_xref="TAIR:AT1G55080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MWT2" /translation="MDPYSGGGSWTMIPSVPTHSNVSTPTNQDHLYLSPPPPQQQFHP QQFQQQRILHQQQQQQQNQHHQSLASHFHLLQLVENLGDAIDNGSRDQHSDALINELN NHFEKCQQLLNSIAASINTKAMTVEGQKQKLEESEQLLNQRRDLIANYGISVEDLVKT EP" gene 20272140..20274907 /locus_tag="TCM_029050" /note="dbxref CacaoGD:Thecc1EG029050" mRNA join(20272140..20272186,20274048..20274907) /locus_tag="TCM_029050" /product="LOB domain-containing protein 22" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400008679" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029052t1" /inference="similar to AA sequence:ricco:28694.m000665" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc3859t2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2582t1" CDS 20274113..20274688 /locus_tag="TCM_029050" /note="dbxref ricco:28694.m000665; paralog of Thecc1EG029052t1" /codon_start=1 /product="LOB domain-containing protein 22" /protein_id="EOY27123.1" /db_xref="TAIR:AT3G13850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MWT1" /translation="MSILKTRSNGTTQACAACKYRRRKCAPDCILAPYFPHDRQRQFL IAHKLFGVCNITKVIKDLNSPEKDIAMHTIIFQSDVRANDPVGGCYRIIQELQHQIEY SQAELDLVFHQLAICRAQAHQQQQQSHLQVQEPGDSTLGCEMVNADPLNSYNSNNYYV EEPQEQQFAVDNHHHHLMIFGAFKNPQPVNL" gene 20276607..20279886 /locus_tag="TCM_029051" /note="dbxref CacaoGD:Thecc1EG029051" mRNA join(20276607..20277059,20279173..20279886) /locus_tag="TCM_029051" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.35 coverage" CDS join(20276883..20277059,20279173..20279229) /locus_tag="TCM_029051" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27124.1" /translation="MLDCSMVFQLLNSGPRGLGCTTISSCHLPTVLHPLLARRVPHKH PPRSPLICAHALSFPVESILFNSERSEGKPENL" gene 20280150..20281087 /locus_tag="TCM_029052" /note="dbxref CacaoGD:Thecc1EG029052" mRNA 20280150..20281087 /locus_tag="TCM_029052" /product="LOB domain-containing protein 22" /inference="alignment:exonerate- protein:2:ricco:28694.m000665" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029050t1" /inference="similar to AA sequence:ricco:28694.m000665" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4714t1" CDS 20280295..20280981 /locus_tag="TCM_029052" /note="dbxref ricco:28694.m000665; paralog of Thecc1EG029050t1" /codon_start=1 /product="LOB domain-containing protein 22" /protein_id="EOY27125.1" /db_xref="TAIR:AT3G13850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LRW1" /translation="MSIPRTGSNGTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFL NAHKLFGVSNITKIIKNLTPPEKDIAMRTIVFQSDARANDPVGGCYRIIQELQRQIEY SQAELDLVFHQLAICRAQAHQQQQQSHLQMHEPGDSSLGCEMVNADPLNSYNSNYYYV EEPHEQQFSVNNNHHHLQENYDSWGIQESTTLDSLNVKQSFIRVSDNEVKPDLDILVK DIRSGLRLKN" mobile_element 20283574..20284186 /note="source:CACAO_M_E57344_F86_scaffold_9 1 820" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20284595..20284837) /note="source:CACAO_M_E22966_F73_scaffold_4 1282 1566" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20284838..20285578 /note="source:CACAO_M_E49577_F244_scaffold_7 1 841" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20286740..20287566) /note="source:scaffold_4_CACTA_0503 3224 4050" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20287456..20287587 /note="source:INTACT669_F295_scaffold_3-int 1763 1890" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20287555..20288521) /note="source:CACAO_M_E71365_F86_scaffold_10 491 1468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20291482..20291976) /note="source:CACAO_M_S_E66812_F83_scaffold_6 1 496" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20297335..20298418) /note="source:MITE_hAT_9 9 1103" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(20298417..20298718) /note="source:CACAO_on_SS_E135_scaffold_10 5810 6095" /mobile_element_type="transposon:TIR/Mutator" gene complement(20298740..20299431) /locus_tag="TCM_029054" /note="dbxref CacaoGD:Thecc1EG029054" mRNA complement(20298740..20299431) /locus_tag="TCM_029054" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(20299075..20299323) /locus_tag="TCM_029054" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27126.1" /translation="MWPDLATMAPDRCFPAVGSGHGVPDPTVGFSRKAPDPVLPRGQI WGLSAKSGWISVESYRKGLDRRFSTIFDCCHHQHHLRC" mobile_element complement(20300029..20300181) /note="source:CACAO_on_SS_E135_scaffold_10 5603 5774" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(20300180..20302040) /note="source:CACAO_on_SS_E135_scaffold_10 4729 5707" /mobile_element_type="transposon:TIR/Mutator" gene complement(20303024..20312015) /locus_tag="TCM_029055" /note="dbxref CacaoGD:Thecc1EG029055" mRNA complement(join(20303024..20304103,20304187..20304265, 20304522..20304627,20304713..20304816,20304891..20304990, 20305069..20305164,20305793..20305870,20305939..20306007, 20306084..20306164,20306279..20306368,20306456..20306542, 20307003..20307107,20307227..20307322,20307407..20307582, 20308152..20308311,20308954..20309085,20309466..20309487, 20309611..20309824,20311547..20312015)) /locus_tag="TCM_029055" /product="Heat shock protein 60-3A isoform 1" /inference="alignment:exonerate- protein:2:ricco:28694.m000667" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020438t1" /inference="similar to AA sequence:ricco:28694.m000667" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05383t00001" mRNA complement(join(20303076..20304103,20304187..20304265, 20304522..20304627,20304713..20304816,20304891..20304990, 20305069..20305164,20305939..20306007,20306084..20306164, 20306279..20306368,20306456..20306542,20307003..20307107, 20307227..20307322,20307407..20307582,20308152..20308311, 20308954..20309085,20309466..20309487,20309611..20309909)) /locus_tag="TCM_029055" /product="Heat shock protein 60-3A isoform 3" /inference="alignment:exonerate- protein:2:ricco:28694.m000667" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020438t1" /inference="similar to AA sequence:ricco:28694.m000667" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc332t1; inference alignment:Newbler:10:TSA:cgbaB_g05383t00001" mRNA complement(join(20303813..20304103,20304187..20304265, 20304522..20304627,20304713..20304816,20304891..20304990, 20305069..20305164,20305801..20305870,20305939..20306007, 20306084..20306164,20306279..20306368,20306456..20306542, 20307003..20307107,20307227..20307322,20307407..20307582, 20308152..20308311,20308954..20309085,20309466..20309487, 20309611..20309909)) /locus_tag="TCM_029055" /product="Chaperonin-60 kDa protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:28694.m000667" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020438t7" /inference="similar to AA sequence:ricco:28694.m000667" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc337t3; inference alignment:Newbler:10:TSA:cgbaB_g05383t00001" CDS complement(join(20304004..20304103,20304187..20304265, 20304522..20304627,20304713..20304816,20304891..20304990, 20305069..20305164,20305939..20306007,20306084..20306164, 20306279..20306368,20306456..20306542,20307003..20307107, 20307227..20307322,20307407..20307582,20308152..20308311, 20308954..20309085,20309466..20309487,20309611..20309648)) /locus_tag="TCM_029055" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28694.m000667; paralog of Thecc1EG020438t1" /codon_start=1 /product="Heat shock protein 60-3A isoform 3" /protein_id="EOY27129.1" /db_xref="TAIR:AT3G13860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZM7" /translation="MHRRASKLASFICSSTSKKLVYSRVICNRNYVAKVINFGFGARA AMLQGVSEVAEAVKVTMGPKGRNVIIEKRPGYPKVTKDGVTVAKSIKFKNKAKNVGAD LVKQVANATNKVAGDGTTCATVLTQAILLEGCKSVAAGVNVMDLRSGINMAVDAVISD LKSRAIMISTPEEITQVATISANGEREIGELIARAMEKVGKEGVITVTEGNTLDNELE VVEGMKLSRGYISSYFITDQKTQKCELENPLIIIHDKKISDMNSLVRILELAINKNRP LLVVAEDVESDSLALLILNKHHAGLKVCAIKAPGFGDNRRANLDDLAILTGGEVISDE RGLTLDKIKVEMLGTAKRLRTAMEKSTAMFDREKAQERLSKLSGGVAVFKVGGASEAE VGERKDRVTDALNATRAAVEEGIVPGGGVALLYGIKVLQNLQTQNEDQKRGIQIIQDA LKSPTLTITSNAGYDGSLVLGRLLEQDDDNLGFDASKGTYVDMVKAGIIDPLKVVRTA LVDAASISLLLTTTEASVLENPDEKKPPSRMPDIDNDY" CDS complement(join(20304004..20304103,20304187..20304265, 20304522..20304627,20304713..20304816,20304891..20304990, 20305069..20305164,20305793..20305870,20305939..20306007, 20306084..20306164,20306279..20306368,20306456..20306542, 20307003..20307107,20307227..20307322,20307407..20307582, 20308152..20308311,20308954..20309085,20309466..20309487, 20309611..20309648)) /locus_tag="TCM_029055" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28694.m000667; paralog of Thecc1EG020438t1" /codon_start=1 /product="Heat shock protein 60-3A isoform 1" /protein_id="EOY27127.1" /db_xref="TAIR:AT3G13860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZM7" /translation="MHRRASKLASFICSSTSKKLVYSRVICNRNYVAKVINFGFGARA AMLQGVSEVAEAVKVTMGPKGRNVIIEKRPGYPKVTKDGVTVAKSIKFKNKAKNVGAD LVKQVANATNKVAGDGTTCATVLTQAILLEGCKSVAAGVNVMDLRSGINMAVDAVISD LKSRAIMISTPEEITQVATISANGEREIGELIARAMEKVGKEGVITVTEGNTLDNELE VVEGMKLSRGYISSYFITDQKTQKCELENPLIIIHDKKISDMNSLVRILELAINKNRP LLVVAEDVESDSLALLILNKHHAGLKVCAIKAPGFGDNRRANLDDLAILTGGEVISDE RGLTLDKIKVEMLGTAKRVTVSLDDTIILHGGGDKKLIEERCEQLRTAMEKSTAMFDR EKAQERLSKLSGGVAVFKVGGASEAEVGERKDRVTDALNATRAAVEEGIVPGGGVALL YGIKVLQNLQTQNEDQKRGIQIIQDALKSPTLTITSNAGYDGSLVLGRLLEQDDDNLG FDASKGTYVDMVKAGIIDPLKVVRTALVDAASISLLLTTTEASVLENPDEKKPPSRMP DIDNDY" CDS complement(join(20305127..20305164,20305801..20305870, 20305939..20306007,20306084..20306164,20306279..20306368, 20306456..20306542,20307003..20307107,20307227..20307322, 20307407..20307582,20308152..20308311,20308954..20309085, 20309466..20309487,20309611..20309648)) /locus_tag="TCM_029055" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28694.m000667; paralog of Thecc1EG020438t7" /codon_start=1 /product="Chaperonin-60 kDa protein isoform 2" /protein_id="EOY27128.1" /db_xref="TAIR:AT3G13860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GCB2" /translation="MHRRASKLASFICSSTSKKLVYSRVICNRNYVAKVINFGFGARA AMLQGVSEVAEAVKVTMGPKGRNVIIEKRPGYPKVTKDGVTVAKSIKFKNKAKNVGAD LVKQVANATNKVAGDGTTCATVLTQAILLEGCKSVAAGVNVMDLRSGINMAVDAVISD LKSRAIMISTPEEITQVATISANGEREIGELIARAMEKVGKEGVITVTEGNTLDNELE VVEGMKLSRGYISSYFITDQKTQKCELENPLIIIHDKKISDMNSLVRILELAINKNRP LLVVAEDVESDSLALLILNKHHAGLKVCAIKAPGFGDNRRANLDDLAILTGGEVISDE RGLTLDKIKVEMLGTAKRVTVSLDDTIILHGGGDKKLIEERSADGHGEEHCHV" gene complement(20312866..20313980) /locus_tag="TCM_029056" /note="dbxref CacaoGD:Thecc1EG029056" mRNA complement(20312866..20313980) /locus_tag="TCM_029056" /product="Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04560.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037291t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s04560.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12524t00001" CDS complement(20312945..20313715) /locus_tag="TCM_029056" /note="paralog of Thecc1EG037291t1" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative" /protein_id="EOY27130.1" /db_xref="Phytozome:POPTR_0003s04560.1" /db_xref="TAIR:AT1G17620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PI80" /translation="MTDRVYPSSKPAANGGAAPATTANPSFPATKAQLYGASRPLYRP QANRHRYRRSCCCSCCLWTSVAILLLILLAAIAGAILYVLYRPHRPTFTVSSLKISTL NITSGSKLITNINLNVTAKNPNKKLVYTYDPITISLITNDDIDIGDGSFGSFVHGTKN TTLLKAAITSNQELDDTSAGKLKTALNSKNGLQLKIKLVTKVKAKMGALKTPKLGIRV ICEGIKATAPKGKSATTASTSDAKCKVDLRIKIWKWTF" gene 20320026..20328739 /locus_tag="TCM_029057" /note="dbxref CacaoGD:Thecc1EG029057" mRNA join(20320026..20320088,20321300..20321489, 20323370..20323459,20323778..20323903,20324007..20324216, 20324364..20324456,20324559..20324666,20324778..20325149, 20325537..20325830,20326077..20326466,20326603..20326846, 20327065..20328739) /locus_tag="TCM_029057" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene23053" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037655t6" /inference="similar to AA sequence:Phytozome:POPTR_0003s03140.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4752t3" mRNA join(20320936..20321489,20323370..20323459, 20323812..20323903,20324007..20324216,20324364..20324456, 20324559..20324666,20324778..20325149,20325537..20325830, 20326077..20326466,20326603..20326846,20327065..20328212) /locus_tag="TCM_029057" /product="Kinase superfamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene23053" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037655t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s03140.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc596t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4752t3" mRNA join(20321233..20321489,20323370..20323459, 20323778..20323903,20324007..20324216,20324364..20324456, 20324559..20324666,20324910..20325149,20325537..20325830, 20326077..20326466,20326603..20326846,20327065..20328739) /locus_tag="TCM_029057" /product="Kinase superfamily protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene23053" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037655t7" /inference="similar to AA sequence:Phytozome:POPTR_0003s03140.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b028096t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4752t3" mRNA join(20321233..20321489,20323370..20323459, 20323778..20323903,20324007..20324216,20324364..20324456, 20324559..20324666,20325537..20325830,20326077..20326466, 20326603..20326846,20327065..20328739) /locus_tag="TCM_029057" /product="Kinase superfamily protein isoform 4" /inference="alignment:exonerate-protein:2:frave:gene23053" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037655t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s03140.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:PASA:2:TSA:puevd3b028096t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4752t3" CDS join(20321414..20321489,20323370..20323459, 20323778..20323903,20324007..20324216,20324364..20324456, 20324559..20324666,20324778..20325149,20325537..20325830, 20326077..20326466,20326603..20326846,20327065..20327755) /locus_tag="TCM_029057" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037655t6" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY27131.1" /db_xref="Phytozome:POPTR_0003s03140.1" /db_xref="TAIR:AT5G56890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N5H0" /translation="MGLQLTVLVMKVCITLSAMSVDGSSVRVSWPPRGLPTETPTVHP IGPGQPPLIQPDPAPSLTRTPPSSGRTRNGELAAAPSSKESHHSSSINHSPTKALHPQ PVLKPPSIAVAPSASSFGSPARDWMHGPASSPSLSFYKHDYAMNGFGDSAPEPSYLIH QPADSQQVPAVSPSQYSIPSWVSPAPALSPTDPSRHFNMPTLQPAISPVGSSLENTKG SPAPVVMALPPPPPNKDCTSMACTEPLTYTPSGSPCGCVWPIQVKLRLGVAIYTFFPL VSELAQEIAASVRLNHSQVRIMGANAASQELEKSTVLINLVPWEVKFDSSTSLLVYKK FWNRHVFIKPSLFGSYEVVYVHYPGLPASPPAASSSASAIDDGPYSGHDNHGEAIKPL GVDVPRKKTDGIRQSLIAVIILSCFSAFVVCLGIIWLILLKYGACVKEREHLPQAIKS SPEKPSGAGAMMQGSTSSAASMSIGSKGLTYTGLAKNFTLNDIERATNSFDASRVIGE GGFGIVYRGILDDGAPVAVKALKREDKRGGQEFLAEVEMLSRLHHRNLVKLIGICTED NIRCLVYELVPNGSLESHLHGVDKETGPLDWGARMKIALGAARGLAYLHEDSSPRVIH RDFKSSNILLEHDFTPKVSDFGLARTALDEGNKYISTHVMGTFGYLAPEYAMTGHLLV KSDVYSYGVVLLELLTGRKPVDLSQPPGQENLVAWARPLLTATEGLETVIDPAIKSDV SFDSIAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNEFDEKKEVESKVCVQEDFPT TVDSLVSRLSSELVEASDTYHQVPGCDFSRGSNIALSASDFLSIPMGLEEQEPASFRR HSCSGPVGTGRRSHFWQRIRSLSRGSRSEHGFSVKFWPGSR" CDS join(20321414..20321489,20323370..20323459, 20323778..20323903,20324007..20324216,20324364..20324456, 20324559..20324666,20324910..20325149,20325537..20325830, 20326077..20326466,20326603..20326846,20327065..20327755) /locus_tag="TCM_029057" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG037655t7" /codon_start=1 /product="Kinase superfamily protein isoform 3" /protein_id="EOY27133.1" /db_xref="Phytozome:POPTR_0003s03140.1" /db_xref="TAIR:AT5G56890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N5H0" /translation="MGLQLTVLVMKVCITLSAMSVDGSSVRVSWPPRGLPTETPTVHP IGPGQPPLIQPDPAPSLTRTPPSSGRTRNGELAAAPSSKESHHSSSINHSPTKALHPQ PVLKPPSIAVAPSASSFGSPARDWMHGPASSPSLSFYKHDYAMNGFGDSAPEPSYLIH QPADSQQVPAVSPSQYSIPSWVSPAPALSPTDPSRHFNMPTLQPAISPVGSSLENTKG SPAPVVMALPPPPPNKELAQEIAASVRLNHSQVRIMGANAASQELEKSTVLINLVPWE VKFDSSTSLLVYKKFWNRHVFIKPSLFGSYEVVYVHYPGLPASPPAASSSASAIDDGP YSGHDNHGEAIKPLGVDVPRKKTDGIRQSLIAVIILSCFSAFVVCLGIIWLILLKYGA CVKEREHLPQAIKSSPEKPSGAGAMMQGSTSSAASMSIGSKGLTYTGLAKNFTLNDIE RATNSFDASRVIGEGGFGIVYRGILDDGAPVAVKALKREDKRGGQEFLAEVEMLSRLH HRNLVKLIGICTEDNIRCLVYELVPNGSLESHLHGVDKETGPLDWGARMKIALGAARG LAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARTALDEGNKYISTHVMGTFG YLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSQPPGQENLVAWARPLLTATE GLETVIDPAIKSDVSFDSIAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNEFDEKK EVESKVCVQEDFPTTVDSLVSRLSSELVEASDTYHQVPGCDFSRGSNIALSASDFLSI PMGLEEQEPASFRRHSCSGPVGTGRRSHFWQRIRSLSRGSRSEHGFSVKFWPGSR" CDS join(20321414..20321489,20323370..20323459, 20323778..20323903,20324007..20324216,20324364..20324456, 20324559..20324666,20325537..20325830,20326077..20326466, 20326603..20326846,20327065..20327755) /locus_tag="TCM_029057" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG037655t1" /codon_start=1 /product="Kinase superfamily protein isoform 4" /protein_id="EOY27134.1" /db_xref="Phytozome:POPTR_0003s03140.1" /db_xref="TAIR:AT5G56890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N5H0" /translation="MGLQLTVLVMKVCITLSAMSVDGSSVRVSWPPRGLPTETPTVHP IGPGQPPLIQPDPAPSLTRTPPSSGRTRNGELAAAPSSKESHHSSSINHSPTKALHPQ PVLKPPSIAVAPSASSFGSPARDWMHGPASSPSLSFYKHDYAMNGFGDSAPEPSYLIH QPADSQQVPAVSPSQYSIPSWVSPAPALSPTDPSRHFNMPTLQPAISPVGSSLENTKG SPAPVVMALPPPPPNKGLPASPPAASSSASAIDDGPYSGHDNHGEAIKPLGVDVPRKK TDGIRQSLIAVIILSCFSAFVVCLGIIWLILLKYGACVKEREHLPQAIKSSPEKPSGA GAMMQGSTSSAASMSIGSKGLTYTGLAKNFTLNDIERATNSFDASRVIGEGGFGIVYR GILDDGAPVAVKALKREDKRGGQEFLAEVEMLSRLHHRNLVKLIGICTEDNIRCLVYE LVPNGSLESHLHGVDKETGPLDWGARMKIALGAARGLAYLHEDSSPRVIHRDFKSSNI LLEHDFTPKVSDFGLARTALDEGNKYISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYG VVLLELLTGRKPVDLSQPPGQENLVAWARPLLTATEGLETVIDPAIKSDVSFDSIAKV AAIASMCVQPEVSHRPFMGEVVQALKLVCNEFDEKKEVESKVCVQEDFPTTVDSLVSR LSSELVEASDTYHQVPGCDFSRGSNIALSASDFLSIPMGLEEQEPASFRRHSCSGPVG TGRRSHFWQRIRSLSRGSRSEHGFSVKFWPGSR" CDS join(20323380..20323459,20323812..20323903, 20324007..20324216,20324364..20324456,20324559..20324666, 20324778..20325149,20325537..20325830,20326077..20326466, 20326603..20326846,20327065..20327755) /locus_tag="TCM_029057" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037655t1" /codon_start=1 /product="Kinase superfamily protein isoform 2" /protein_id="EOY27132.1" /db_xref="Phytozome:POPTR_0003s03140.1" /db_xref="TAIR:AT5G56890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N5H0" /translation="MATKRTANRNTNCSSYRARSTTIDTTSSGRTRNGELAAAPSSKE SHHSSSINHSPTKALHPQPVLKPPSIAVAPSASSFGSPARDWMHGPASSPSLSFYKHD YAMNGFGDSAPEPSYLIHQPADSQQVPAVSPSQYSIPSWVSPAPALSPTDPSRHFNMP TLQPAISPVGSSLENTKGSPAPVVMALPPPPPNKDCTSMACTEPLTYTPSGSPCGCVW PIQVKLRLGVAIYTFFPLVSELAQEIAASVRLNHSQVRIMGANAASQELEKSTVLINL VPWEVKFDSSTSLLVYKKFWNRHVFIKPSLFGSYEVVYVHYPGLPASPPAASSSASAI DDGPYSGHDNHGEAIKPLGVDVPRKKTDGIRQSLIAVIILSCFSAFVVCLGIIWLILL KYGACVKEREHLPQAIKSSPEKPSGAGAMMQGSTSSAASMSIGSKGLTYTGLAKNFTL NDIERATNSFDASRVIGEGGFGIVYRGILDDGAPVAVKALKREDKRGGQEFLAEVEML SRLHHRNLVKLIGICTEDNIRCLVYELVPNGSLESHLHGVDKETGPLDWGARMKIALG AARGLAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARTALDEGNKYISTHVM GTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSQPPGQENLVAWARPLL TATEGLETVIDPAIKSDVSFDSIAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNEF DEKKEVESKVCVQEDFPTTVDSLVSRLSSELVEASDTYHQVPGCDFSRGSNIALSASD FLSIPMGLEEQEPASFRRHSCSGPVGTGRRSHFWQRIRSLSRGSRSEHGFSVKFWPGS R" mobile_element 20328645..20329306 /note="source:CACAO_Again_on_E100_scaffold_4 1 709" /mobile_element_type="transposon:TIR/hAT" mobile_element 20329302..20329421 /note="source:CACAO_Again_on_E100_scaffold_4 4685 4804" /mobile_element_type="transposon:TIR/hAT" gene complement(20330220..20335502) /locus_tag="TCM_029058" /note="dbxref CacaoGD:Thecc1EG029058" mRNA complement(join(20330220..20330661,20330773..20331341, 20331542..20331927,20332081..20332391,20333997..20334375, 20335160..20335502)) /locus_tag="TCM_029058" /product="Glucose-methanol-choline (GMC) oxidoreductase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s20800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016166t4" /inference="similar to AA sequence:Phytozome:POPTR_0001s20800.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05011t00001" CDS complement(join(20330607..20330661,20330773..20331341, 20331542..20331927,20332081..20332391,20333997..20334375, 20335160..20335235)) /locus_tag="TCM_029058" /note="paralog of Thecc1EG016166t4" /codon_start=1 /product="Glucose-methanol-choline (GMC) oxidoreductase family protein" /protein_id="EOY27135.1" /db_xref="Phytozome:POPTR_0001s20800.1" /db_xref="TAIR:AT1G72970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S746" /translation="MAAFVGAVKLFLCLALWLNTLSSLQGAKDFYEFRYPFIKRASSF SSSSSFSSSNTDEVSYDYIIVGGGTAGCPLAATLSRNFSVLLLERGGVPFSNANVSFL SNFHIALADTSPSSASQPFVSTDGVLNARARVLGGGTCINAGFYTRANSDFIRRVGWD ARLVNESYPWVEKQIVHQPKLAGWQDAFKDGLLDVGVAPYNGFTYDHIYGTKVGGTIF DRFGRRHTAAELLATANPKMLTVLVYATVQKVLFDKTGKRPRAMGVIFKDENGNQHQA FLTNSRRSEVILSCGAIGTPQMLMLSGIGPKAELEKLNISMVLHNEFVGKGMADNPMN SVFVPTNRPVEQSLIQTVGITKMGVYIEASSGFGQSQDSIRCHHGILSAEIGQLSTIP PKQRTPEAIQAFLKRKRDLPHEAFKGGFILEKIASPISTGHLNLVNTNIDDNPSVTFN YFGHPHDLQRCVDGIRMAAKVIQSDRFTNFTKCDKPTVEKLLNMSVKANINLIPKHTN DTKFLQQFCKDTVITIWHYHGGCHVGKVVHPDHRVLGTNRLRIVDGSTFSESPGTNPQ GTVLMMGRYMGVKILRRRLGRAAGV" mobile_element 20340071..20340125 /note="source:CACAO_on_E18_scaffold_1 720 775" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(20340946..20395253) /locus_tag="TCM_029059" /note="dbxref CacaoGD:Thecc1EG029059" mRNA complement(join(20340946..20342027,20342626..20342722, 20342823..20342917,20343324..20343428,20343790..20343954, 20344038..20344134,20344224..20344486,20345297..20345421, 20345732..20345897,20345984..20346062,20346608..20346699, 20346820..20346888,20346975..20347133,20347507..20347563, 20347666..20347728,20347814..20347861,20348041..20348106, 20348188..20348251,20348360..20348430,20349326..20349428, 20349507..20349573,20349984..20350133,20350436..20350520, 20395139..20395253)) /locus_tag="TCM_029059" /product="Root hair defective 3 GTP-binding protein (RHD3) isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s03120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029323t2" /inference="similar to AA sequence:ricco:28694.m000671" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc720t7" mRNA complement(join(20341216..20342027,20342626..20342722, 20342823..20342917,20343324..20343428,20343790..20343954, 20344038..20344134,20344224..20344486,20345297..20345421, 20345732..20345897,20345984..20346062,20346608..20346699, 20346820..20346888,20346975..20347133,20347507..20347563, 20347666..20347728,20347814..20347861,20348041..20348106, 20348188..20348251,20348360..20348430,20349326..20349428, 20349507..20349573,20349984..20350133,20350784..20350870)) /locus_tag="TCM_029059" /product="Root hair defective 3 GTP-binding protein (RHD3) isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s03120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029323t2" /inference="similar to AA sequence:ricco:28694.m000671" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc710t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc720t7" CDS complement(join(20341791..20342027,20342626..20342722, 20342823..20342917,20343324..20343428,20343790..20343954, 20344038..20344134,20344224..20344486,20345297..20345421, 20345732..20345897,20345984..20346062,20346608..20346699, 20346820..20346888,20346975..20347133,20347507..20347563, 20347666..20347728,20347814..20347861,20348041..20348106, 20348188..20348251,20348360..20348430,20349326..20349428, 20349507..20349573,20349984..20350133,20350784..20350787)) /locus_tag="TCM_029059" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28694.m000671; paralog of Thecc1EG029323t2" /codon_start=1 /product="Root hair defective 3 GTP-binding protein (RHD3) isoform 2" /protein_id="EOY27137.1" /db_xref="TAIR:AT3G13870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B6U4D9" /translation="MAKSEECCSTQLIDGDGIFNDTGIDQFIKEVKLGECGLSYAVVS IMGPQSSGKSTLLNNLFGTNFREMDAFKGRSQTTKGIWLANCAGIEPCTLVMDLEGTD GRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS PRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETPLSEFFNVEVVAL SSYEEKEEQFKEQVANLRQRFFHSIAPGGLAGDRRGAVPASGFSFSAQQIWKVIKENK DLDLPAHKVMVATVRCEEIANEKYVSFMANENWCLLEEAVQSGPIAGFGKKLNSILYT FLSEYEAEATYFDEGVRSAKRKQLEEKLLQLVQPAYQSMLGHLRSGTLQKFKEAFEKA LNGGEGFSMAARNCTESYMALFDEGCADAVVELANWDSSKVRDKLHRDIDAHVASVRA AKLSELTSSYEAKLNEALSGPVEALLDGASNETWPAIRKLLQRETESAISGLSGALSG FDMDEQTKDKMLTSLEDYARGVVEAKAREEAGRVLIRMKDRFSTLFSHDSDSMPRVWT GKEDIRAITKTARSASLKLLSVMAAIRLDDNADNIENTLSSALVDTKNNAAVTDRSIT AFDPLASSTWEQVPPAKTLITPVQCKSLWRQFRAETEYSVTQAISAQEANKRNNNWLP PPWAIVALIVLGFNEFMTLLRNPLYLGVIFVGFLIMKALWVQLDISGEFRNGALPGLL SLSTKFLPTVMNLLRKLAEEGQMPANNNPQRNPAVASKGFQNGSTSSDLSSSASSEVT SSGNGTEYSSPTKED" CDS complement(join(20341791..20342027,20342626..20342722, 20342823..20342917,20343324..20343428,20343790..20343954, 20344038..20344134,20344224..20344486,20345297..20345421, 20345732..20345897,20345984..20346062,20346608..20346699, 20346820..20346888,20346975..20347133,20347507..20347563, 20347666..20347728,20347814..20347861,20348041..20348106, 20348188..20348251,20348360..20348430,20349326..20349428, 20349507..20349573,20349984..20350133,20350436..20350466)) /locus_tag="TCM_029059" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28694.m000671; paralog of Thecc1EG029323t2" /codon_start=1 /product="Root hair defective 3 GTP-binding protein (RHD3) isoform 1" /protein_id="EOY27136.1" /db_xref="TAIR:AT3G13870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B6U4D9" /translation="MFGSGPLMNLSKSEECCSTQLIDGDGIFNDTGIDQFIKEVKLGE CGLSYAVVSIMGPQSSGKSTLLNNLFGTNFREMDAFKGRSQTTKGIWLANCAGIEPCT LVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTV FQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETPLSE FFNVEVVALSSYEEKEEQFKEQVANLRQRFFHSIAPGGLAGDRRGAVPASGFSFSAQQ IWKVIKENKDLDLPAHKVMVATVRCEEIANEKYVSFMANENWCLLEEAVQSGPIAGFG KKLNSILYTFLSEYEAEATYFDEGVRSAKRKQLEEKLLQLVQPAYQSMLGHLRSGTLQ KFKEAFEKALNGGEGFSMAARNCTESYMALFDEGCADAVVELANWDSSKVRDKLHRDI DAHVASVRAAKLSELTSSYEAKLNEALSGPVEALLDGASNETWPAIRKLLQRETESAI SGLSGALSGFDMDEQTKDKMLTSLEDYARGVVEAKAREEAGRVLIRMKDRFSTLFSHD SDSMPRVWTGKEDIRAITKTARSASLKLLSVMAAIRLDDNADNIENTLSSALVDTKNN AAVTDRSITAFDPLASSTWEQVPPAKTLITPVQCKSLWRQFRAETEYSVTQAISAQEA NKRNNNWLPPPWAIVALIVLGFNEFMTLLRNPLYLGVIFVGFLIMKALWVQLDISGEF RNGALPGLLSLSTKFLPTVMNLLRKLAEEGQMPANNNPQRNPAVASKGFQNGSTSSDL SSSASSEVTSSGNGTEYSSPTKED" mRNA complement(join(20342538..20342722,20342823..20342917, 20343324..20343428,20343790..20343954,20344038..20344134, 20344224..20344486,20345297..20345421,20345732..20345897, 20345984..20346062,20346608..20346699,20346820..20346888, 20346975..20347133,20347507..20347563,20347666..20347728, 20347814..20347861,20348041..20348106,20348188..20348251, 20348360..20348430,20349326..20349428,20349507..20349530, 20349984..20350133,20350784..20350877)) /locus_tag="TCM_029059" /product="Root hair defective 3 GTP-binding protein (RHD3) isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s03120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029323t2" /inference="similar to AA sequence:ricco:28694.m000671" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc710t3; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc720t7" CDS complement(join(20342587..20342722,20342823..20342917, 20343324..20343428,20343790..20343954,20344038..20344134, 20344224..20344486,20345297..20345421,20345732..20345897, 20345984..20346062,20346608..20346699,20346820..20346888, 20346975..20347133,20347507..20347563,20347666..20347728, 20347814..20347861,20348041..20348106,20348188..20348251, 20348360..20348430,20349326..20349428,20349507..20349530, 20349984..20350033)) /locus_tag="TCM_029059" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28694.m000671; paralog of Thecc1EG029323t2" /codon_start=1 /product="Root hair defective 3 GTP-binding protein (RHD3) isoform 3" /protein_id="EOY27138.1" /db_xref="TAIR:AT1G72960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B6U4D9" /translation="MRAIICRGFYHGTTKQREMDAFKGRSQTTKGIWLANCAGIEPCT LVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTV FQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETPLSE FFNVEVVALSSYEEKEEQFKEQVANLRQRFFHSIAPGGLAGDRRGAVPASGFSFSAQQ IWKVIKENKDLDLPAHKVMVATVRCEEIANEKYVSFMANENWCLLEEAVQSGPIAGFG KKLNSILYTFLSEYEAEATYFDEGVRSAKRKQLEEKLLQLVQPAYQSMLGHLRSGTLQ KFKEAFEKALNGGEGFSMAARNCTESYMALFDEGCADAVVELANWDSSKVRDKLHRDI DAHVASVRAAKLSELTSSYEAKLNEALSGPVEALLDGASNETWPAIRKLLQRETESAI SGLSGALSGFDMDEQTKDKMLTSLEDYARGVVEAKAREEAGRVLIRMKDRFSTLFSHD SDSMPRVWTGKEDIRAITKTARSASLKLLSVMAAIRLDDNADNIENTLSSALVDTKNN AAVTDRSITAFDPLASSTWEQVPPAKTLITPVQCKSLWRQFRAETEYSVTQAISAQEA NKRNNNWLPPPWAIVALIVLGFNEFMTLLRNPLYLGVIFVGFLIMKALWVQLDISGEF RNGAVSVQLNFCLSPV" mobile_element 20351862..20351936 /note="source:scaffold_2_CACTA_0276 10698 10772" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20358448..20358666 /note="source:CACAO_on_E18_scaffold_1 1 219" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 20358750..20359148 /note="source:CACAO_on_E18_scaffold_1 7508 7891" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 20361488..20362240 /note="source:scaffold_5_CACTA_0584 3235 4015" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20362241..20363908 /note="source:CACAO_M_E85098_F86_scaffold_10 1 1663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20366678..20367940 /note="source:CACAO_M_E49368_F86_scaffold_7 1664 2927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20367942..20368811 /note="source:scaffold_5_CACTA_0584 4012 4883" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20377872..20380784 /note="source:CACAO_M_S_E84627_F279_scaffold_6 1 2913" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20383357..20384598) /note="source:CACAO_M_E34086_F86_scaffold_4 1674 2916" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20384699..20385442) /note="source:CACAO_M_E34124_F86_scaffold_4 911 1652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20385543..20385908) /note="source:CACAO_M_E35867_F86_scaffold_5 1 366" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20395708..20400953 /locus_tag="TCM_029062" /note="dbxref CacaoGD:Thecc1EG029062" mRNA join(20395708..20396156,20396574..20396668, 20396961..20397028,20397118..20397161,20397414..20397491, 20397587..20397740,20399433..20399585,20399740..20399844, 20400245..20400310,20400476..20400953) /locus_tag="TCM_029062" /product="Acid phosphatase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s20350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037637t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s20350.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05698t00001" CDS join(20395852..20396156,20396574..20396668, 20396961..20397028,20397118..20397161,20397414..20397491, 20397587..20397740,20399433..20399585,20399740..20399844, 20400245..20400310,20400476..20400574) /locus_tag="TCM_029062" /note="paralog of Thecc1EG037637t1" /codon_start=1 /product="Acid phosphatase" /protein_id="EOY27139.1" /db_xref="Phytozome:POPTR_0001s20350.1" /db_xref="TAIR:AT1G72880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GB93" /translation="MTTTSVKKNMLPPGLVNNLQEVLLSRKGGNNNNEQQKDDSAADS TEPSTSTCNEDTADSNDSSKPVVLLTNGEGIDSLGLVYLVQALVRLGLYNVHVCAPQS DKSVSGHSVTLRETIAVTPAEIDGATAYEVSGTTVDCVSLALSGALFSWSKPLLVISG INRGSSCGHHMFYSGVVAGAREALICGVPSLSISLNWKREESQESDFKDAVAVCLPLI NAAIRDIEKGVFPKSCFLSIEIPTSPSANKGFKLTKQSFWRSAPSWQAVSANRHPSAA HFMSNQQSLGIQLAQLSRDASAAGAARRLTTQRKNVEIESVGAAKSDTKKVKKYFRLE FVDREQEDTDEDLDFRALDNGFVAVTPLSLSPQIESDIQTAASDWISSALHGEQ" gene 20402918..20404571 /locus_tag="TCM_029063" /note="dbxref CacaoGD:Thecc1EG029063" mRNA join(20402918..20403244,20403642..20403735, 20404072..20404273,20404490..20404571) /locus_tag="TCM_029063" /product="Ribosomal protein L34, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016799001" /inference="similar to AA sequence:Phytozome:GSVIVT01016799001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00010t00007" CDS join(20402980..20403244,20403642..20403735, 20404072..20404144) /locus_tag="TCM_029063" /codon_start=1 /product="Ribosomal protein L34, putative" /protein_id="EOY27140.1" /db_xref="Phytozome:GSVIVT01016799001" /db_xref="TAIR:AT3G13882.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84R26" /translation="MATKALVRTGASLMNRLIANPLLNQKPISNHLIANQGFQITPQL FPSLLKPQPSLHFPQNDADSLSKVSSLGFLYPTGLPSFRFFLPDVDSASEPMLLFPKR TYQPSHIKRKRTHGYFARKATKGGRRVIARRIAKGRSRITA" misc_feature join(20404072..20404099,20404846..20405630) /locus_tag="TCM_029063" /note="Gene fragment of Thecc1EG029063t1; dbxref gnl|CacaoGD|Thecc1EG029063t1; quality class is mediumpartial-partof is thecc1eg029063t1, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1170t3; dbxref CacaoGD:Thecc1EG029064t1" gene complement(20406203..20408497) /locus_tag="TCM_029065" /note="dbxref CacaoGD:Thecc1EG029065" mRNA complement(join(20406203..20406518,20406862..20407718, 20407925..20408054,20408247..20408497)) /locus_tag="TCM_029065" /product="MYB7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s20370.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s20370.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4754t1" CDS complement(join(20406908..20407718,20407925..20408054, 20408247..20408379)) /locus_tag="TCM_029065" /codon_start=1 /product="MYB7" /protein_id="EOY27141.1" /db_xref="Phytozome:POPTR_0001s20370.1" /db_xref="TAIR:AT3G13890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5SF87" /translation="MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLA GLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDN EVKNFWNSSIKKKLISHDVPALASFADVHNSTPPEDGFISLNANPNLILSTQQDHLYL SPAAPVLQSFGHGDFKPNSNNYNIDLVHHHFPTPMLPPPSNTSSSFDPTWPLPPFVPQ HLDHQNQEDVQIFSNEVVQNFVSDKLINPTTAVTPYDQPLMAPTVPKLCEILEGNICS LPQASVSLENIDPVSRLSSSCFPSAGSTYPHDMHVPTSQMEYMDTIITSQLPSSSSSS SLSALSSGQYVTNPNLASSSWDP" mobile_element complement(20408381..20408438) /note="source:CACAO_M_S_E144410_F335_scaffold_10 608 658" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20416059..20420895) /locus_tag="TCM_029066" /note="dbxref CacaoGD:Thecc1EG029066" mRNA complement(join(20416059..20416962,20417108..20417221, 20417368..20417592,20417772..20417909,20420352..20420609, 20420702..20420895)) /locus_tag="TCM_029066" /product="IQ-domain 7, putative" /inference="alignment:exonerate- protein:2:ricco:29706.m001340" /inference="similar to AA sequence:Phytozome:POPTR_0003s04240.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01455t00002" CDS complement(join(20416285..20416962,20417108..20417221, 20417368..20417592,20417772..20417909,20420352..20420609, 20420702..20420770)) /locus_tag="TCM_029066" /codon_start=1 /product="IQ-domain 7, putative" /protein_id="EOY27142.1" /db_xref="Phytozome:POPTR_0003s04240.1" /db_xref="TAIR:AT1G72670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GCB7" /translation="MGASGKWFKSLITLKTLQAPSNQEKVGDKAKKKWRLWRSSSEGF GSSSSKGLKMRPVASSEASDSSFMVDDDVLAAAMATIVRVQPKDFRAVKREWAAIRIQ TAFRGLLLIYAFDVEQANKRRKLGLLILDCSFASMILVNSIVTISLLGRINLMARRAL RALKAVVRIQAIFRGRQVRKQAAVTLRCMQALVRVQARVRAQCVISTEGHPVQKLQNE YHSQTDPTKNTERGWCNSPGTLEELSAKQQMRQEGAIKRERAIAYSFSKQQSRSYASP NSKANKQPLPSKHQRLDRNSPDWNWLDRWMAIKPWETRMMEDIHTEASEMTTFSRNSH SSCFEHDSLKVKRNNVTSRVLARPPIASQTSGSLSAPSSESVYDEGSTSTSSTSASPT TLSSNTLVADTLDDDRTQKPSYMNPTESIKAKQKAFRFSSDNMPRHAVDDLHFHKKLV TLPCEDTRSSAGSNASISISRELYRPIQLGRHDCLRNQWRQGR" mobile_element complement(20421210..20421305) /note="source:CACAO_M_S_E18487_F233_scaffold_3 1154 1252" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20422964..20433608) /locus_tag="TCM_029067" /note="dbxref CacaoGD:Thecc1EG029067" mRNA complement(join(20422964..20423706,20423824..20423925, 20424037..20424267,20424564..20424651,20424772..20424860, 20425266..20425331,20425638..20425752,20425843..20426271, 20433222..20433608)) /locus_tag="TCM_029067" /product="Calmodulin-binding family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene06923" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037628t1" /inference="similar to AA sequence:frave:gene06923" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(20423233..20423706,20423824..20423925, 20424037..20424267,20424564..20424651,20424772..20424860, 20425266..20425331,20425638..20425752,20425843..20426258)) /locus_tag="TCM_029067" /note="dbxref frave:gene06923; paralog of Thecc1EG037628t1" /codon_start=1 /product="Calmodulin-binding family protein, putative" /protein_id="EOY27143.1" /db_xref="TAIR:AT5G57010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXZ0" /translation="MVMMTSVDFERMGKATLRTSSFKKRDSENSAYVSDHEQDNVPVG ESISFKKKKPGKLELQMTIPALDIMNRKISDLGGNDELVNKVNSITFSSPEQEKFLSS RPASELHAAATKLQKFYKSYRTRRNLADCAVVVEELWWKALEFAALRRSSVSFFNSKK SETAVSRWARARTRAAKVGKGLSKDVKGQQLALRHWLEAIDPRHRYGHNLHLYYNIWF ESGSSQPFFYWLDVGDGKEVNIDKCPRTDLQRQCIKYLGPKEREAYEVVLEKGKLIYK QSKVAVNTIEGTKWIFVLSTSRILYVGQKEKGLFQHSSFLAGGATIASGRLVILDGTL DAVWPYSGHYRPTEANFAELCRFLEEHHVDLTNVKKYAMDDDVIPSQVKIHEELKPES VKETTENMPSNNGAEPIHANGCTKDHIIGKNENEGNTDRSRLVDKAAAHDLGKPVKSK WCTGVGPRIGCVRDYPAQLQFKALEQVNLSPRVKAGHPSVPCAPIPSPRPSPKLHLSP RLACIGLVSPRVRVPASN" mobile_element complement(20433190..20433465) /note="source:scaffold_9_CACTA_0943 5578 5859" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20434645..20434734) /note="source:INTACT24F_F12_scaffold_1-int 3858 3950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20434657..20437218) /note="source:CACAO_M_S_E99244_F4_scaffold_9 3856 6341" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20434953..20437243 /note="source:scaffold_3_CACTA_0382 9618 11901" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20438621..20439256) /note="source:scaffold_10_CACTA_0130 7077 7701" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20439394..20439660) /note="source:scaffold_10_CACTA_0130 7921 8172" /mobile_element_type="transposon:TIR/CACTA" gene 20440946..20445953 /locus_tag="TCM_029068" /note="dbxref CacaoGD:Thecc1EG029068" mRNA join(20440946..20441038,20441476..20441910) /locus_tag="TCM_029068" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400008606" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037632t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s15130.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13018t00001; inference alignment:Newbler:10:TSA:cgbaL_g13018t00001" CDS join(20440999..20441038,20441476..20441711) /locus_tag="TCM_029068" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037632t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27144.1" /db_xref="Phytozome:POPTR_0005s15130.1" /translation="MSEPKHHPTDHRSEKDVKAPNIIERAKEEIGAIIHTDKKPHHHK ETHGRNDDIDEDTPVHDVKGPNVFERVKEEVEAIVGAIHPKKESKGS" mRNA join(<20441010..20441038,20441482..20441730, 20445943..20445953) /locus_tag="TCM_029068" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400008606" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037632t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s15130.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc577t1_C2; inference alignment:Newbler:10:TSA:cgbaL_g13018t00001" CDS join(<20441011..20441038,20441482..20441711) /locus_tag="TCM_029068" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037632t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY27145.1" /db_xref="Phytozome:POPTR_0005s15130.1" /translation="KHHPTDHRSDVKAPNIIERAKEEIGAIIHTDKKPHHHKETHGRN DDIDEDTPVHDVKGPNVFERVKEEVEAIVGAIHPKKESKGS" gene complement(20443211..20444538) /locus_tag="TCM_029069" /note="dbxref CacaoGD:Thecc1EG029069" mRNA complement(20443211..20444538) /locus_tag="TCM_029069" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.12 coverage" CDS complement(20444085..20444309) /locus_tag="TCM_029069" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27146.1" /translation="MLNVEVIAVKLSHGSKARNKAVLIAPLSKPFNSLVDSLGGRLCC RLIFYELTKNFPTMKGWGPGTLKSTSNNHQ" mobile_element complement(20445094..20445204) /note="source:CACAO_M_S_E51240_F74_scaffold_4 2165 2284" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20445390..20446387 /locus_tag="TCM_029070" /note="dbxref CacaoGD:Thecc1EG029070" mRNA join(20445390..20445613,20445943..20446387) /locus_tag="TCM_029070" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04220.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s04220.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14256t00001" CDS join(20445505..20445613,20445943..20446256) /locus_tag="TCM_029070" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27147.1" /db_xref="Phytozome:POPTR_0003s04220.1" /translation="MQGRLFCFLLALQIVSWTSAASRPLAPNDGFGVHQPVTGQRPQS LQDTSGPSSSSKEVSMQSFESKGGTAATNEEANAEGESKQGIGSSPPSCEHKCYGCIP CEAIQVPTTSKLSHVGLQYANYEPESWKCKCGPSIYSP" gene complement(20446694..20449533) /locus_tag="TCM_029071" /note="dbxref CacaoGD:Thecc1EG029071" mRNA complement(join(20446694..20447070,20447381..20447500, 20447646..20447878,20447970..20448105,20448355..20448562, 20448665..20448750,20449304..20449533)) /locus_tag="TCM_029071" /product="Mitochondrial substrate carrier family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037313t1" /inference="similar to AA sequence:Phytozome:GSVIVT01035380001" /note="quality class is medium, express is weak, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4770t1" CDS complement(join(20446999..20447070,20447381..20447500, 20447646..20447878,20447970..20448105,20448355..20448562, 20448665..20448750,20449304..20449486)) /locus_tag="TCM_029071" /note="paralog of Thecc1EG037313t1" /codon_start=1 /product="Mitochondrial substrate carrier family protein, putative" /protein_id="EOY27148.1" /db_xref="Phytozome:GSVIVT01035380001" /db_xref="TAIR:AT1G14560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HW79" /translation="MMDNEGSDICSSNEGDSYEDEQVQIVHSLPYFLLELIAAGASSS LAKTTVAPLERIKILLQTKAEGFHSVGVYGSLKKLVKYEGLRGLYKANGVSILRMLPH SAFQYMTYEQYRSLLHYKCPSVGTGPLLNILAGSAANGTAFLCTYPLDLARTKYAYQV VDRGQSGSDGLRCIHSGHPAHQGIKDVFRTVYRGGGMLAFYRGVGPTLGGILPYNVIK FYAQEELKRWVPKEHQSSIALNLSCGALAGLFGQTVMYPLDVVRRQMQVNQFNLPSFK LENTNYVDILNQSGARYNNTIEGLTAIIRNQGWRQLYGGLCINYMKVVPSVAIGLASF DVIKCWLHIPS" gene 20449658..20452326 /locus_tag="TCM_029072" /note="dbxref CacaoGD:Thecc1EG029072" mRNA join(20449658..20449839,20450162..20450321, 20450593..20450667,20450737..20450770,20450844..20450921, 20451193..20451277,20451496..20452326) /locus_tag="TCM_029072" /product="SNARE-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s20390.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029552t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s04200.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage" CDS join(20449816..20449839,20450162..20450321, 20450593..20450667,20450737..20450770,20450844..20450921, 20451193..20451277,20451496..20451555) /locus_tag="TCM_029072" /note="paralog of Thecc1EG029552t1" /codon_start=1 /product="SNARE-like superfamily protein" /protein_id="EOY27149.1" /db_xref="Phytozome:POPTR_0003s04200.1" /db_xref="TAIR:AT4G08520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1F4" /translation="MARFFSSRDSCPAVKNILILDSEGKRVAVKYYSDEWPTNSAKLA FEKSLFTKTLKSNARTEAEITMFDSNIVIYKFVQDLHFFVTGANLALFVGHSSENTID KREALENLDLIFLCIDEIVDQGMILETDANVLAGKVAIQNMEVSAPLSEQTISQALAT AREHLTRTLLK" gene 20456228..20463549 /locus_tag="TCM_029073" /note="dbxref CacaoGD:Thecc1EG029073" mRNA join(20456228..20456696,20457328..20459240, 20459329..20459439,20459577..20459853,20459936..20460024, 20460156..20460228,20460294..20460530,20460662..20460779, 20461429..20461452) /locus_tag="TCM_029073" /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein isoform 4" /inference="alignment:exonerate-protein:2:frave:gene07488" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011901t1" /inference="similar to AA sequence:ricco:29706.m001335" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc14t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4798t3" mRNA join(20456262..20456696,20457328..20459240, 20459329..20459439,20459577..20459853,20459936..20460024, 20460156..20460228,20460321..20460530,20460662..20460779, 20461429..20461527,20461634..20461662) /locus_tag="TCM_029073" /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene07488" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011901t1" /inference="similar to AA sequence:ricco:29706.m001335" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc11t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4798t3" mRNA join(20456262..20456696,20457328..20459240, 20459329..20459439,20459577..20459853,20459936..20460024, 20460156..20460228,20460321..20460530,20460662..20460787, 20461634..>20461656) /locus_tag="TCM_029073" /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein isoform 5" /inference="alignment:exonerate-protein:2:frave:gene07488" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011901t1" /inference="similar to AA sequence:ricco:29706.m001335" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc12t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4798t3" mRNA join(20456527..20456696,20457328..20459240, 20459329..20459439,20459577..20459853,20459936..20460024, 20460156..20460228,20460321..20460530,20460662..20460787, 20461429..20461527,20461634..20461825,20461915..20462965) /locus_tag="TCM_029073" /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene07488" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029318t1" /inference="similar to AA sequence:ricco:29706.m001335" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4798t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4798t3" mRNA join(20456570..20456696,20457328..20459240, 20459329..20459439,20459577..20459853,20459936..20460024, 20460156..20460228,20460294..20460530,20460662..20460787, 20461429..20461527,20461634..20461825,20461915..20463549) /locus_tag="TCM_029073" /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene07488" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029318t1" /inference="similar to AA sequence:ricco:29706.m001335" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4798t3" CDS join(20457451..20459240,20459329..20459439, 20459577..20459853,20459936..20460024,20460156..20460228, 20460294..20460530,20460662..20460787,20461429..20461527, 20461634..20461825,20461915..20462586) /locus_tag="TCM_029073" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29706.m001335; paralog of Thecc1EG029318t1" /codon_start=1 /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein isoform 1" /protein_id="EOY27150.1" /db_xref="TAIR:AT1G17500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGG3" /translation="MAGGRIRARIRRSHLYTFSCLRPSATEEGPHSIEGPGYSRIVHC NQPLMHKKKPLNYRSNYISTTKYNFLTFLPKALYEQFHRVANLYFLGAAIVSVTPLSP FSAVSMIAPLAFVVGLSMAKEALEDWRRFMQDMKVNTRKVKVHKEEGIFGNKSWQKVQ VGDVLKVEKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRALEVTLPLDDDE AFKNFTGTIKCEDPNPSLYTFVGNLEYERQVYPLDPSQILLRDSKLRNTAFVYGVVIF TGHDSKVMQNATKSPSKRSRIERKMDYIIYVLFSLLLVISLMSSIGFAVKTKFYMPDW WYLQPQSTDDYYNPEKPVVSGVTHLVTALMLYGYLIPISLYVSIEVVKVLQATFINQD IQMYDEETGNPAQARTSNLNEELGQVDTILSDKTGTLTCNQMDFLRCSIAGTAYGVRS SEVELAAAQQMAIDLEDQDVERSTVSRQKGKQQEIELETVVTSKDEKNYKSPIKGFSF EDSRIMKGNWLKEPKADIIKLFFRTLAICHTAIPELNEETGSYTYEAESPDEGAFLVA AREFGFEFFKRTQSSVFIHERYSSSGQPIEREFKILNMLEFTSKRKRMTVIVRDEDGQ ILLLCKGADSIIFDRLSKNGRMYEEDTTRHLNEYGEAGLRTLALAYRKLEESEYSAWN NEFQKAKTSIGADRETMLEKVADMMERELILIGATAVEDKLQKGVPQCIDKLAQAGLK IWVLTGDKMETAINIGYACSLLRQGMKQICITAISSDAKETALLFVTDQVVKENILMQ ITNASQMIKLEKDPHAAFALIIDGKTLAYALGDDMKQQFLGLAVDCASVICCRVSPKQ KALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSVAQFR FLERLLVVHGHWCYKRIAQMVCYFFYKNIAFGLTLFYFEAFTGFSGQSVYDDWYMLLF NVVLTSLPVISLGVFEQDVSSEVCLQFPALYQQGPRNLFFDWYRILGWMGNGLYSSLI IFFLNIIIFYDQAFRAGGQTADMAALGTTMFTCIIWALNCQIALTMSHFTWIQHLFIW GSIVTWYLFLLVYGMVSPTISGNAYQILVEALAPAPIYWSATLLVTVACNLPYMAHIS FQRCFHPLDHHIIQEIKYYRKDVEDQRMWSRERSKARQKTKIGFTARVDAKIRQLRGR LQRKQPSLETHSPMSPS" CDS join(20457451..20459240,20459329..20459439, 20459577..20459853,20459936..20460024,20460156..20460228, 20460321..20460530,20460662..20460787,20461429..20461527, 20461634..20461825,20461915..20462586) /locus_tag="TCM_029073" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29706.m001335; paralog of Thecc1EG029318t1" /codon_start=1 /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein isoform 2" /protein_id="EOY27151.1" /db_xref="TAIR:AT1G17500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGG3" /translation="MAGGRIRARIRRSHLYTFSCLRPSATEEGPHSIEGPGYSRIVHC NQPLMHKKKPLNYRSNYISTTKYNFLTFLPKALYEQFHRVANLYFLGAAIVSVTPLSP FSAVSMIAPLAFVVGLSMAKEALEDWRRFMQDMKVNTRKVKVHKEEGIFGNKSWQKVQ VGDVLKVEKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRALEVTLPLDDDE AFKNFTGTIKCEDPNPSLYTFVGNLEYERQVYPLDPSQILLRDSKLRNTAFVYGVVIF TGHDSKVMQNATKSPSKRSRIERKMDYIIYVLFSLLLVISLMSSIGFAVKTKFYMPDW WYLQPQSTDDYYNPEKPVVSGVTHLVTALMLYGYLIPISLYVSIEVVKVLQATFINQD IQMYDEETGNPAQARTSNLNEELGQVDTILSDKTGTLTCNQMDFLRCSIAGTAYGVRS SEVELAAAQQMAIDLEDQDVERSTVSRQKGKQQEIELETVVTSKDEKNYKSPIKGFSF EDSRIMKGNWLKEPKADIIKLFFRTLAICHTAIPELNEETGSYTYEAESPDEGAFLVA AREFGFEFFKRTQSSVFIHERYSSSGQPIEREFKILNMLEFTSKRKRMTVIVRDEDGQ ILLLCKGADSIIFDRLSKNGRMYEEDTTRHLNEYGEAGLRTLALAYRKLEESEYSAWN NEFQKAKTSIGADRETMLEKVADMMERELILIGATAVEDKLQKGVPQCIDKLAQAGLK IWVLTGDKMETAINIGYACSLLRQGMKQICITAISSDAKEVVKENILMQITNASQMIK LEKDPHAAFALIIDGKTLAYALGDDMKQQFLGLAVDCASVICCRVSPKQKALVTRLVK EGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSVAQFRFLERLLVVH GHWCYKRIAQMVCYFFYKNIAFGLTLFYFEAFTGFSGQSVYDDWYMLLFNVVLTSLPV ISLGVFEQDVSSEVCLQFPALYQQGPRNLFFDWYRILGWMGNGLYSSLIIFFLNIIIF YDQAFRAGGQTADMAALGTTMFTCIIWALNCQIALTMSHFTWIQHLFIWGSIVTWYLF LLVYGMVSPTISGNAYQILVEALAPAPIYWSATLLVTVACNLPYMAHISFQRCFHPLD HHIIQEIKYYRKDVEDQRMWSRERSKARQKTKIGFTARVDAKIRQLRGRLQRKQPSLE THSPMSPS" CDS join(20457451..20459240,20459329..20459439, 20459577..20459853,20459936..20460024,20460156..20460228, 20460321..20460530,20460662..20460787,20461634..>20461654) /locus_tag="TCM_029073" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29706.m001335; paralog of Thecc1EG011901t1" /codon_start=1 /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein isoform 5" /protein_id="EOY27154.1" /db_xref="TAIR:AT1G17500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGG3" /translation="MAGGRIRARIRRSHLYTFSCLRPSATEEGPHSIEGPGYSRIVHC NQPLMHKKKPLNYRSNYISTTKYNFLTFLPKALYEQFHRVANLYFLGAAIVSVTPLSP FSAVSMIAPLAFVVGLSMAKEALEDWRRFMQDMKVNTRKVKVHKEEGIFGNKSWQKVQ VGDVLKVEKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRALEVTLPLDDDE AFKNFTGTIKCEDPNPSLYTFVGNLEYERQVYPLDPSQILLRDSKLRNTAFVYGVVIF TGHDSKVMQNATKSPSKRSRIERKMDYIIYVLFSLLLVISLMSSIGFAVKTKFYMPDW WYLQPQSTDDYYNPEKPVVSGVTHLVTALMLYGYLIPISLYVSIEVVKVLQATFINQD IQMYDEETGNPAQARTSNLNEELGQVDTILSDKTGTLTCNQMDFLRCSIAGTAYGVRS SEVELAAAQQMAIDLEDQDVERSTVSRQKGKQQEIELETVVTSKDEKNYKSPIKGFSF EDSRIMKGNWLKEPKADIIKLFFRTLAICHTAIPELNEETGSYTYEAESPDEGAFLVA AREFGFEFFKRTQSSVFIHERYSSSGQPIEREFKILNMLEFTSKRKRMTVIVRDEDGQ ILLLCKGADSIIFDRLSKNGRMYEEDTTRHLNEYGEAGLRTLALAYRKLEESEYSAWN NEFQKAKTSIGADRETMLEKVADMMERELILIGATAVEDKLQKGVPQCIDKLAQAGLK IWVLTGDKMETAINIGYACSLLRQGMKQICITAISSDAKEVVKENILMQITNASQMIK LEKDPHAAFALIIDGKTLAYALGDDMKQQFLGLAVDCASVICCRVSPKQKALVTRLVK EGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQVCYFFYK" CDS join(20457451..20459240,20459329..20459439, 20459577..20459853,20459936..20460024,20460156..20460228, 20460294..20460530,20460662..20460779,20461429..20461445) /locus_tag="TCM_029073" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29706.m001335; paralog of Thecc1EG011901t1" /codon_start=1 /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein isoform 4" /protein_id="EOY27153.1" /db_xref="TAIR:AT1G17500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGG3" /translation="MAGGRIRARIRRSHLYTFSCLRPSATEEGPHSIEGPGYSRIVHC NQPLMHKKKPLNYRSNYISTTKYNFLTFLPKALYEQFHRVANLYFLGAAIVSVTPLSP FSAVSMIAPLAFVVGLSMAKEALEDWRRFMQDMKVNTRKVKVHKEEGIFGNKSWQKVQ VGDVLKVEKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRALEVTLPLDDDE AFKNFTGTIKCEDPNPSLYTFVGNLEYERQVYPLDPSQILLRDSKLRNTAFVYGVVIF TGHDSKVMQNATKSPSKRSRIERKMDYIIYVLFSLLLVISLMSSIGFAVKTKFYMPDW WYLQPQSTDDYYNPEKPVVSGVTHLVTALMLYGYLIPISLYVSIEVVKVLQATFINQD IQMYDEETGNPAQARTSNLNEELGQVDTILSDKTGTLTCNQMDFLRCSIAGTAYGVRS SEVELAAAQQMAIDLEDQDVERSTVSRQKGKQQEIELETVVTSKDEKNYKSPIKGFSF EDSRIMKGNWLKEPKADIIKLFFRTLAICHTAIPELNEETGSYTYEAESPDEGAFLVA AREFGFEFFKRTQSSVFIHERYSSSGQPIEREFKILNMLEFTSKRKRMTVIVRDEDGQ ILLLCKGADSIIFDRLSKNGRMYEEDTTRHLNEYGEAGLRTLALAYRKLEESEYSAWN NEFQKAKTSIGADRETMLEKVADMMERELILIGATAVEDKLQKGVPQCIDKLAQAGLK IWVLTGDKMETAINIGYACSLLRQGMKQICITAISSDAKETALLFVTDQVVKENILMQ ITNASQMIKLEKDPHAAFALIIDGKTLAYALGDDMKQQFLGLAVDCASVICCRVSPKQ KALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGCNGQ" CDS join(20457451..20459240,20459329..20459439, 20459577..20459853,20459936..20460024,20460156..20460228, 20460321..20460530,20460662..20460779,20461429..20461445) /locus_tag="TCM_029073" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29706.m001335; paralog of Thecc1EG011901t1" /codon_start=1 /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein isoform 3" /protein_id="EOY27152.1" /db_xref="TAIR:AT1G17500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGG3" /translation="MAGGRIRARIRRSHLYTFSCLRPSATEEGPHSIEGPGYSRIVHC NQPLMHKKKPLNYRSNYISTTKYNFLTFLPKALYEQFHRVANLYFLGAAIVSVTPLSP FSAVSMIAPLAFVVGLSMAKEALEDWRRFMQDMKVNTRKVKVHKEEGIFGNKSWQKVQ VGDVLKVEKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRALEVTLPLDDDE AFKNFTGTIKCEDPNPSLYTFVGNLEYERQVYPLDPSQILLRDSKLRNTAFVYGVVIF TGHDSKVMQNATKSPSKRSRIERKMDYIIYVLFSLLLVISLMSSIGFAVKTKFYMPDW WYLQPQSTDDYYNPEKPVVSGVTHLVTALMLYGYLIPISLYVSIEVVKVLQATFINQD IQMYDEETGNPAQARTSNLNEELGQVDTILSDKTGTLTCNQMDFLRCSIAGTAYGVRS SEVELAAAQQMAIDLEDQDVERSTVSRQKGKQQEIELETVVTSKDEKNYKSPIKGFSF EDSRIMKGNWLKEPKADIIKLFFRTLAICHTAIPELNEETGSYTYEAESPDEGAFLVA AREFGFEFFKRTQSSVFIHERYSSSGQPIEREFKILNMLEFTSKRKRMTVIVRDEDGQ ILLLCKGADSIIFDRLSKNGRMYEEDTTRHLNEYGEAGLRTLALAYRKLEESEYSAWN NEFQKAKTSIGADRETMLEKVADMMERELILIGATAVEDKLQKGVPQCIDKLAQAGLK IWVLTGDKMETAINIGYACSLLRQGMKQICITAISSDAKEVVKENILMQITNASQMIK LEKDPHAAFALIIDGKTLAYALGDDMKQQFLGLAVDCASVICCRVSPKQKALVTRLVK EGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGCNGQ" gene 20463548..20469511 /locus_tag="TCM_029074" /note="dbxref CacaoGD:Thecc1EG029074" mRNA join(20463548..20464202,20464303..20464343, 20465649..20465718,20465834..20465982,20466073..20466168, 20466254..20466324,20466933..20466994,20467101..20467164, 20467244..20467328,20467415..20467541,20467689..20467771, 20467874..20467937,20468116..20468264,20468620..20469511) /locus_tag="TCM_029074" /product="Casein kinase 1-like protein 2" /inference="alignment:exonerate- protein:2:ricco:29706.m001333" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037626t1" /inference="similar to AA sequence:ricco:29706.m001333" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00482t00002" CDS join(20464127..20464202,20464303..20464343, 20465649..20465718,20465834..20465982,20466073..20466168, 20466254..20466324,20466933..20466994,20467101..20467164, 20467244..20467328,20467415..20467541,20467689..20467771, 20467874..20467937,20468116..20468264,20468620..20468916) /locus_tag="TCM_029074" /note="dbxref ricco:29706.m001333; paralog of Thecc1EG037626t1" /codon_start=1 /product="Casein kinase 1-like protein 2" /protein_id="EOY27155.1" /db_xref="TAIR:AT1G72710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ASJ8" /translation="MEPRVGNKYRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKT KHPQLLYESKLYKILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSL KTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTS THQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKA GTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDL FIREGFQFDYVFDWTILKYQQSQIANPPTRALGPGAGPSSGIPPAGAIADRQSGGEDG RPSGWSSTDPTRRRHSGPIVNSGNLAKQKSPVANDPPLAKDPMAMLSGSNFLRSSGSS RRAAVSSSRDAAIMGSDSEPSRLRSIDTSAGSLPKISSGQRSSPVLSSEVKRSSSGRN TSNMKNIESALRGIEGLHFSNDERLHY" gene complement(20470405..20471009) /locus_tag="TCM_029075" /note="dbxref CacaoGD:Thecc1EG029075" mRNA complement(join(20470405..20470772,20470880..20471009)) /locus_tag="TCM_029075" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29706.m001332" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037625t1" /inference="similar to AA sequence:ricco:29706.m001332" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(join(20470433..20470772,20470880..20470935)) /locus_tag="TCM_029075" /note="dbxref ricco:29706.m001332; paralog of Thecc1EG037625t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27156.1" /db_xref="TAIR:AT5G11970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PH98" /translation="MRLHNIINNSTKERQKPKRSKSYRDGGMQMGSYYGGREGGPSNM QDLRCYSASYANSVQPNQLGKEIKIKKSKSPFGSSSKSWSFNDPELQRKKRVASYKVY AVEGKMKGSLRKSFRWIKDTYTQVVYGWR" gene complement(20472865..20476679) /locus_tag="TCM_029076" /note="dbxref CacaoGD:Thecc1EG029076" mRNA complement(join(20472865..20473812,20473908..20474338, 20474484..20474590,20474729..20474798,20476253..20476679)) /locus_tag="TCM_029076" /product="Eukaryotic translation initiation factor 4A1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29706.m001331.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037319t1" /inference="similar to AA sequence:frave:gene07496" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05525t00001" CDS complement(join(20473177..20473812,20473908..20474338, 20474484..20474590,20474729..20474796)) /locus_tag="TCM_029076" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene07496; paralog of Thecc1EG037319t1" /codon_start=1 /product="Eukaryotic translation initiation factor 4A1 isoform 1" /protein_id="EOY27157.1" /db_xref="TAIR:AT3G13920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q14240" /translation="MAGLAPEGSQFDARQYDQKMTELLQTDGDEFFTSYDEVYDSFDS MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL DYGVVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVH VVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQQLPAKIQVGV FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLF DIQKFYNVVVEELPSNVADLL" mRNA complement(join(<20473251..20473812,20473908..20474153, 20474482..20474590,20474729..20474798,20476253..20476386)) /locus_tag="TCM_029076" /product="Eukaryotic translation initiation factor 4A1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29706.m001331.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037319t1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is medium, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc588t10; inference alignment:Newbler:10:TSA:cgbaP2_g05525t00001" mRNA complement(join(<20473251..20473812,20473908..20474153, 20474482..20474610,20474729..20474798,20476253..20476386)) /locus_tag="TCM_029076" /product="Eukaryotic translation initiation factor 4A1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29706.m001331.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037319t1" /inference="similar to AA sequence:ricco:29706.m001331" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is medium, protein is partial3; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc588t2; inference alignment:Newbler:10:TSA:cgbaP2_g05525t00001" CDS complement(join(<20473252..20473812,20473908..20474153, 20474482..20474590,20474729..20474796)) /locus_tag="TCM_029076" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG037319t1" /codon_start=1 /product="Eukaryotic translation initiation factor 4A1 isoform 3" /protein_id="EOY27159.1" /db_xref="TAIR:AT3G13920.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q14240" /translation="MAGLAPEGSQFDARQYDQKMTELLQTDGDEFFTSYDEVYDSFDS MGLQENLLRGIYAYGAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVV GTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQQLPAKIQVGVFSA TMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAI TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER" CDS complement(join(<20473252..20473812,20473908..20474153, 20474482..20474526)) /locus_tag="TCM_029076" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29706.m001331; paralog of Thecc1EG037319t1" /codon_start=1 /product="Eukaryotic translation initiation factor 4A1 isoform 2" /protein_id="EOY27158.1" /db_xref="TAIR:AT3G13920.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q14240" /translation="MGLQENLLRGIYAYGAQQIEKVMRALGDYLGVKVHACVGGTSVR EDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIF QQLPAKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEW KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAIN FVTRDDER" gene complement(20476649..20481012) /locus_tag="TCM_029077" /note="dbxref CacaoGD:Thecc1EG029077" mRNA complement(join(20476649..20476671,20478183..20479914, 20480734..20481012)) /locus_tag="TCM_029077" /product="Myristoyl-CoA:protein N-myristoyltransferase" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g20290.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037621t3" /inference="similar to AA sequence:Phytozome:Glyma08g20290.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4803t1" CDS complement(20478587..20479891) /locus_tag="TCM_029077" /note="paralog of Thecc1EG037621t3" /codon_start=1 /product="Myristoyl-CoA:protein N-myristoyltransferase" /protein_id="EOY27160.1" /db_xref="Phytozome:Glyma08g20290.1" /db_xref="TAIR:AT5G57020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTR9" /translation="MVDSNASSGSPEDTPNPNPDGNAPSESDLALDALAQKVQESLGL ERRHKFWESQPVGQFKDLGDSSLPEGPIEAPTPLSEVKQEPYNLPNMYEWVTCDIDSD EMCTEVYKLLANNYVEDDENMFRFNYSKEFLHWAVRPPGYFKSWHIGVRVKSSKKLVA FITGVPARIRVRDDVVNMAEVNFLCVHKKLRSNRLAPVMIKEVTRRVHLENIWQAAYT AGIVIPTPITSCQYWHRSLNPKKLIEVGFSRLGARMTMSRTIKLYKLPESTVTPGFRK MELRDVPAVTRLLRNYLSQFVVAPDFSEHDVEHWLLPTEGVVDSYIVESSETHEITDF CSFYTLSSLILGNQNHSTLKAAYSYYNISTKTPLLQLMNDALIVAKQKDFDVFNALDV MHNESFLKELKFGPGDGSLHYYLYNYRIRNTLKPSELGLVLH" gene complement(20481060..20487268) /locus_tag="TCM_029078" /note="dbxref CacaoGD:Thecc1EG029078" mRNA complement(join(20481060..20481631,20481751..20482024, 20482889..20482972,20485290..20485374,20485937..20486139, 20486826..20487268)) /locus_tag="TCM_029078" /product="Homeodomain-like/winged-helix DNA-binding family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01015170001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037620t1" /inference="similar to AA sequence:ricco:29706.m001328" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11628t00001" CDS complement(join(20481600..20481631,20481751..20482024, 20482889..20482972,20485290..20485374,20485937..20486139, 20486826..20486975)) /locus_tag="TCM_029078" /note="dbxref ricco:29706.m001328; paralog of Thecc1EG037620t1" /codon_start=1 /product="Homeodomain-like/winged-helix DNA-binding family protein, putative" /protein_id="EOY27161.1" /db_xref="TAIR:AT1G72740.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWZ5" /translation="MGNQKQKWTAEEEEALLAGVAKHGPGKWKNILKDPDFAPYLTHR SNIDLKDKWRNLSVSTSAQGSRDKSRAPKVKAIVASLPNTPSSAPAASRAHIVTTDAV VGDASNSSLDGKNAPRYNTMIFEALSTIKDTNGSDISAIVSYIEQRHEVPPNFRRLLS SRLRRLVSQGKLEKIQNCYKIRKDILMGTKTPTPKQKDIRLRQNSGVVSSGETMEEAA ITAAYKVAEAENKSFLAAEAVKEAERVSKMAEDTDSMLQLVKEIYEQCSRGEIVLLA" mobile_element 20488378..20491330 /note="source:CACAO_M_E49245_F143_scaffold_6 1 2953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20493462..20494322 /note="source:INTACT607_F3_scaffold_4-int 12100 12960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20495009..20495179) /note="source:CACAO_M_S_E89272_F5_scaffold_8 6734 6899" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20498941..20500992 /locus_tag="TCM_029079" /note="dbxref CacaoGD:Thecc1EG029079" mRNA join(20498941..20499258,20499427..20499533, 20499624..20499874,20500009..20500992) /locus_tag="TCM_029079" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS join(20499071..20499258,20499427..20499533, 20499624..20499874,20500009..20500644) /locus_tag="TCM_029079" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27162.1" /translation="MYYIYIYIYIYPLSFRTNQSFVKQNRPVEKIKQKMWKDSGSSEV NLASPSLGFVHDAMSTSKGRDKKSNRIVKVEFIMIPHAQNLAKVEKVMEVLVLSASKT WVVGRAVTTEMFNNCPKERWMRFTLTVCVKNLNGSFQDVESQQLFVFFGQITLPKAMW RYDHLKFIGQTKSLSGGLITTQSFTKFTSSLYTCDMKQGGNDHGARKFREMKEGNMSS GAFKHSSIDTVKDRGLVCSLFREENVRRIESASGSDGSDHSEDEYQAEAEEKDFDTGS DSSEEQGEEEDEAEKEENKKEDEEEEEEEEEVEEEEDEEEEEEEEVEEEEEEEEEEEE EEGEEREEEEDEEEEKTAKEEDGTIILVSVKDSQNPASKIAGRIKLHQCSNHGHLLKA I" gene complement(20501217..20518393) /locus_tag="TCM_029080" /note="dbxref CacaoGD:Thecc1EG029080" mRNA complement(join(20501217..20501804,20502391..20502429, 20503131..20503364,20503884..20503942,20504054..20504338, 20504578..20505158,20505621..20506045,20506258..20506413, 20506628..20506930,20507380..20508135,20508259..20508814, 20509469..20509539,20510264..20510458,20511072..20511134, 20511275..20511349,20511451..20511796,20511957..20512470, 20517802..20518393)) /locus_tag="TCM_029080" /product="B-block binding subunit of TFIIIC, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001689001.2" /inference="similar to AA sequence:ricco:29706.m001292" /note="quality class is weak, express is none, homology is ortholog weak, intron is weak, protein is complete" CDS complement(join(20501628..20501804,20502391..20502429, 20503131..20503364,20503884..20503942,20504054..20504338, 20504578..20505158,20505621..20506045,20506258..20506413, 20506628..20506930,20507380..20508135,20508259..20508814, 20509469..20509539,20510264..20510458,20511072..20511134, 20511275..20511349,20511451..20511796,20511957..20512306)) /locus_tag="TCM_029080" /note="dbxref ricco:29706.m001292" /codon_start=1 /product="B-block binding subunit of TFIIIC, putative" /protein_id="EOY27163.1" /db_xref="TAIR:AT1G17450.2" /translation="MDAIISSALEEICEQGRHGLALSSLCSKLGLSVELKRALWTNLL KIPTVQFQVPNRVYDPDNPSIRCFEDVEKLDLIIVAREKLRDNFLGIYDFSLGADEKE FRRQRVVLERIASARTNGIAQSQLSKEFGIEGNKTFYMVRNLEKRGLIVRQEAVERTK GAGKQGQSTRLIHLHRYAKHLGSQQKFEITREEETAGNQDPNIEHIKEGALVKDYVPS MKAICDKLAEADSKVLVISDIKHDLGYSGSRSKRRDWENICGRLKNAGVVEETYVKVN RKDERCLHLLKKFSLVDFEQKPIKHVEGKELKFGRCQIANQLVELPIVHQIYDAIDAA GVEGMLIKECTHLKRNGKLAEKFSLWLKCENCRCPFSISFIDFSVKQVSQRFGVDMKT NYKNCCIMSNKFGMPMQRELHNKNCEYRIRTAKNCEPSDAIPSRSKDLFSKNSSLGVV NPGFSDGSAQILGLLNSESDTLGKTNNRETEIELSCCSTRGSEAGDSISNTCKSQELI HETKKVVSDTGLHTVNSQTMPLKPRQYLTVDNTRREQRIVEWLQVEKIVLRAELYRWL VNLEKDESITMGRKSVDRILDKLENQGQCKCVHLPVHEIMNTDANCKVKVVLHPSIQS LSSEVLGRIRYRLMSFEKQTHGQGSFKKKNINSVLVLDGVQRTHTQAGSDALALRMAA MRANGFISGKLVRAKLLHIFLWDYACSSPARDGVLSYGRQDHDLQNPYVTHNLFDVKA AIEGIPLELFLQVVGSTVQVDNMIEKFRKGVRLCDLSIREYNDLNVTPAIRRLSSILS ILQRLKLIRPVTSESSEDGVIVPHASPMYVLELKPCIEEPPLIATCSSSGCLDCCPDR DAVDEIVRHDFILSNRDAIDEYWRVLEYIYAVADPKAALHAFPGSTVHEIFGHKSWAS GRGMTASQQAKVLKLIVNSNFNKKLPYKECKEIAKNLNLTLEQVLRVCFAKLRHRSKI QDNLDAVGAECQPMNSSSFSRKRKRSAEARALKLGKVDNETGPFCQHSLPRSAGGDED FMGEENLMLASPREHETRVQEHQEEDHWKTSEKRGVNRDKCDSYTSRSAFSKMKSARQ RRFPWTDEADRQLVIQYVKHRAGAKFSDKSRASLSDLPAPPTVCRRRMSFLKQNRKFR ESLISLCNMLSQHYEKQLEETGSRSMDDDDRGLLIPCSSGAGNYRSFFEGIGCNQTRG VQEEHCDNYNMEKINLALEEVLRSRPVATLEAPGNVCDSQFPSNTGSSAARFSRWLRA REKDFLRGGIDLSPDLTCGEVFHLFALVSSGGISASLEIGSNSSHSEVVNENVNFRSI LPTPGYSCDSPWELMVGYATLLMPLTSNQEHVGTLSPEVFKTVYTAIQKAGDQGLAIR EVSRVMDTLGKEMAELVIDVLQKFGLAEKVRINGSLRVIAGSTKKPSNIHMDYDDVQK FNILNRHEHVDSLPNKTHTVDLHEDSMRRNVVYQEQIIDMVCLKAANVMDNIIRKMDL PNPQHCKKLLRLMVRDKHLIMKKMHQSLPSGVPSILGTLNMKKSKLIYREHFFANPMS TSLL" mobile_element complement(20512467..20512534) /note="source:CACAO_M_E43428_F369_scaffold_5 1276 1345" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20512469..20512538 /note="source:CACAO_M_E5326_F22_scaffold_2 3428 3495" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20512476..20512565 /note="source:scaffold_5_CACTA_0584 1977 2070" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20512698..20513370 /note="source:CACAO_MITE5_scaffold_1 48 740" /mobile_element_type="transposon:TIR/MITE" mobile_element 20514992..20515033 /note="source:INTACT410F_F357_scaffold_4-int 9986 10022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20514999..20515037) /note="source:INTACT170_F12_scaffold_5-int 6784 6822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20515025..20516709 /note="source:INTACT410F_F357_scaffold_4-int 109 1801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20515808..20517404 /note="source:scaffold_2_CACTA_0263 1 1632" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20517405..20518411) /note="source:CACAO_M_E4063_F12_scaffold_2 6743 7738" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20518571..20520007 /note="source:INTACT59_F126_scaffold_9-int 1107 2522" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20519999..20520073) /note="source:scaffold_5_CACTA_0596 7005 7075" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20520001..20520090 /note="source:CACAO_M_E24751_F297_scaffold_4 1248 1336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20520012..20520125 /note="source:CACAO_M_E69306_F123_scaffold_9 4935 5045" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20520070..20520948 /note="source:CACAO_M_E52239_F256_scaffold_7 5199 6104" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20523765..20529886 /locus_tag="TCM_029081" /note="dbxref CacaoGD:Thecc1EG029081" mRNA join(20523765..20524191,20524468..20524546, 20524930..20525006,20525178..20525272,20525382..20525422, 20526148..20526203,20526285..20526359,20526484..20526576, 20526781..20527023,20527144..20527257,20527352..20527462, 20527814..20527899,20527983..20528058,20528420..20528487, 20528575..20528641,20528727..20528822,20528922..20529024, 20529108..20529203,20529312..20529818) /locus_tag="TCM_029081" /product="Dihydrolipoamide acetyltransferase, long form protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04140.2" /inference="similar to AA sequence:ricco:29706.m001326" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05187t00001" CDS join(20524153..20524191,20524468..20524546, 20524930..20525006,20525178..20525272,20525382..20525422, 20526148..20526203,20526285..20526359,20526484..20526576, 20526781..20527023,20527144..20527257,20527352..20527462, 20527814..20527899,20527983..20528058,20528420..20528487, 20528575..20528641,20528727..20528822,20528922..20529024, 20529108..20529203,20529312..20529382) /locus_tag="TCM_029081" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29706.m001326" /codon_start=1 /product="Dihydrolipoamide acetyltransferase, long form protein isoform 1" /protein_id="EOY27164.1" /db_xref="TAIR:AT1G54220.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5M729" /translation="MAYASHIINHSKKLRNVPNLMRHVRSFSHGALSSVCKREDVRKT HPLGYVPAERERVSKLVACSPVSSGLSKNSLSRTTMRLGSPVGGLLYGRELTCSQVQS RRGYASNAGLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVTPGEVLCEVETDKATVE MECMEEGYLAKIIKGDGSKEIKVGEIIAITVEEEEDIAKFKDYSPSASDSGAPAAKGP AAPSPPKQEPVEQPVSSPEPKTTKPISPPSGDRIFASPLARKLAEDHKLPLSSIKGTG PDGHIVKADIEDYLGIIIKFLYRVIDAVGFPCHVGSRGSAPTSKAMETKVAALDYVDI PHSQIRKVTASRLLFSKQTIPHYYLTVDTCVDKLMDLRSQLNSLQEASGGKRISVNDL VIKAAALALRKVPQCNSSWTDDYIRQYNNVNINVAVQTDNGLYVPVIRDADKKGLSSI SEEVKHLAQKAKENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSGILAVGSAE KRVIPGSGPEQFKFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL" mRNA join(20525247..20525272,20525382..20525422, 20526148..20526203,20526285..20526359,20526484..20526576, 20526781..20527023,20527144..20527216,20527371..20527462, 20527814..20527899,20527983..20528058,20528420..20528487, 20528575..20528641,20528727..20528822,20528922..20529024, 20529108..20529207,20529312..20529886) /locus_tag="TCM_029081" /product="Dihydrolipoamide acetyltransferase, long form protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04140.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043471t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s04140.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc131t14; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc122t6_C2; inference alignment:Newbler:10:TSA:cgbaB_g05187t00001" CDS join(20526174..20526203,20526285..20526359, 20526484..20526576,20526781..20527023,20527144..20527216, 20527371..20527462,20527814..20527899,20527983..20528058, 20528420..20528487,20528575..20528641,20528727..20528822, 20528922..20529024,20529108..20529207,20529312..20529327) /locus_tag="TCM_029081" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG043471t1" /codon_start=1 /product="Dihydrolipoamide acetyltransferase, long form protein isoform 2" /protein_id="EOY27165.1" /db_xref="Phytozome:POPTR_0003s04140.1" /db_xref="TAIR:AT1G54220.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5M729" /translation="MPSLSPTMTEGNIARWLKKEGDKVTPGEVLCEVETDKATVEMEC MEEGYLAKIIKGDGSKEIKVGEIIAITVEEEEDIAKFKDYSPSASDSGAPAAKGPAAP SPPKQEPVEQPVSSPEPKTTKPISPPSGDRIFASPLARKLAEDHKLPLSSIKGTGPDG HIVKADIEDYLGSRGSAPTSKAMETKVAALDYVDIPHSQIRKVTASRLLFSKQTIPHY YLTVDTCVDKLMDLRSQLNSLQEASGGKRISVNDLVIKAAALALRKVPQCNSSWTDDY IRQYNNVNINVAVQTDNGLYVPVIRDADKKGLSSISEEVKHLAQKAKENSLKPEDYEG GTFTVSNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVIPGSGPEQFKFASFMSVTLS CDHRVIDGMCNWC" gene complement(20530426..20532908) /locus_tag="TCM_029082" /note="dbxref CacaoGD:Thecc1EG029082" mRNA complement(join(20530426..20530812,20532004..20532908)) /locus_tag="TCM_029082" /product="Translocase of inner mitochondrial membrane 23" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04130.1" /inference="similar to AA sequence:ricco:29706.m001325" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4835t2" mobile_element complement(20530569..20530656) /note="source:scaffold_1_CACTA_0016 6347 6434" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(20530679..20530812,20532004..20532532)) /locus_tag="TCM_029082" /note="dbxref ricco:29706.m001325" /codon_start=1 /product="Translocase of inner mitochondrial membrane 23" /protein_id="EOY27166.1" /db_xref="TAIR:AT1G72750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38820" /translation="MAHHHGSDPETDPNTRLYNPYQDLNLQGPITNLYKLPTSPEFLF AEESLHQRRSWGENLTFYTGSAYLGGSLSGAAVGLFSALRNFEQGDTLKLKINRILNS TGHTGRSWGNRIGVVGLIYAGMESGIVAATDRDDVWSSVAAGLGTGAVCRAARGVRSA AVAGALGGLAAGAVVAGGMMEGLVVLDKSLEELLGSSLLLSSCIPRRKKGKRFCLRNF RT" gene 20533420..20536927 /locus_tag="TCM_029083" /note="dbxref CacaoGD:Thecc1EG029083" mRNA join(20533420..20533776,20534059..20534148, 20534309..20534413,20534687..20534794,20534945..20535016, 20535099..20535149,20535525..20535587,20535732..20535807, 20536503..20536927) /locus_tag="TCM_029083" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016814001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037322t2" /inference="similar to AA sequence:Phytozome:GSVIVT01016814001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b028122t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4807t3" mRNA join(20533420..20533776,20534059..20534148, 20534309..20534413,20534687..20534794,20534945..20535016, 20535099..20535149,20535525..20535587,20535683..20535807, 20536503..20536792) /locus_tag="TCM_029083" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016814001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037322t2" /inference="similar to AA sequence:Phytozome:GSVIVT01016814001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4807t3" CDS join(20533654..20533776,20534059..20534148, 20534309..20534413,20534687..20534794,20534945..20535016, 20535099..20535149,20535525..20535587,20535683..20535807, 20536503..20536539) /locus_tag="TCM_029083" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037322t2" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY27167.1" /db_xref="Phytozome:GSVIVT01016814001" /db_xref="TAIR:AT2G26200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HDC4" /translation="MPPAFRPAVIQAGRRYPNLDDYYQKKARKFWDNFYKRHKNKFFK DRHYLEKDWGQYLSDDAHSPNGKVVLEVGCGAGNTIFPLVAAYPKIYVHACDISPHAV ALVKSHVKFKEDRVNAFVYDVTVDNLLERINPSSVDVITLIFMLSAVSPYKMALILQN IRRVLKPDGYVLLRDYAVGDFAQVKLENKNQMISEGFYVRGDGTCSFYFSEDFLSTLF LQAGFNTVDMSTYNKQIKNHHRNINMDRHWIRAVFNNSG" CDS join(20533654..20533776,20534059..20534148, 20534309..20534413,20534687..20534794,20534945..20535016, 20535099..20535149,20535525..20535587,20535732..20535749) /locus_tag="TCM_029083" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037322t2" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /protein_id="EOY27168.1" /db_xref="Phytozome:GSVIVT01016814001" /db_xref="TAIR:AT2G26200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HDC4" /translation="MPPAFRPAVIQAGRRYPNLDDYYQKKARKFWDNFYKRHKNKFFK DRHYLEKDWGQYLSDDAHSPNGKVVLEVGCGAGNTIFPLVAAYPKIYVHACDISPHAV ALVKSHVKFKEDRVNAFVYDVTVDNLLERINPSSVDVITLIFMLSAVSPYKMALILQN IRRVLKPDGYVLLRDYAVGDFAQVKLENKNQMISEGFYVRGDGTLASTL" gene complement(20537149..20544061) /locus_tag="TCM_029084" /note="dbxref CacaoGD:Thecc1EG029084" mRNA complement(join(20537149..20537821,20538345..20539115, 20539448..20539876,20539969..20540070,20540845..20541121, 20541721..20541936,20542496..20542617,20543163..20543371, 20543709..20544061)) /locus_tag="TCM_029084" /product="Kinase protein with adenine nucleotide alpha hydrolases-like domain, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29706.m001324" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037327t1" /inference="similar to AA sequence:frave:gene07499" /note="transcript variant 1; alternatively spliced; quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.27 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4813t1" mRNA complement(join(20537149..20537869,20538345..20539115, 20539448..20539876,20539969..20540070,20540845..20541121, 20541721..20541936,20542496..20542617,20543163..20543371, 20543709..20544061)) /locus_tag="TCM_029084" /product="Kinase protein with adenine nucleotide alpha hydrolases-like domain, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29706.m001324" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037327t1" /inference="similar to AA sequence:frave:gene07499" /note="transcript variant 2; alternatively spliced; quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:PASA:2:TSA:puevd3b028123t1a2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1899t1" CDS complement(join(20537633..20537821,20538345..20539115, 20539448..20539876,20539969..20540070,20540845..20541121, 20541721..20541936,20542496..20542617,20543163..20543371, 20543709..20543889)) /locus_tag="TCM_029084" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene07499; paralog of Thecc1EG037327t1" /codon_start=1 /product="Kinase protein with adenine nucleotide alpha hydrolases-like domain, putative isoform 1" /protein_id="EOY27169.1" /db_xref="TAIR:AT5G12000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S5V0" /translation="MAFSGSATLTMEEIPSITAVAIDRDRNSQLAVKWAVDNLLNNNT GSQCILVHVRSQSLHPHSRTDVAMNSSIGSIMGIFINYLRFLLHLTWARLVFTEDFEA VPKEGRPPTEAELQQFFLPYRGYCARKGIQSKEVVLHDIDVPSALVDYINNNNIGNIV VGASSRNVLTRKLRNPDVPTSLLKSAPESCAVYVISKGKVQFSRLASGPRTDEDNASV NRAPHIKALLSKLTFDSPKIEEFSRTVSSREGSKYRITSDRISDSFKLTPRDKLKTNN GVKSSTPSTGSQTPESPNRISISENSNFSGPPSFRSTDMSGSNSECTAEDFNSLNSLT PRGLETEMRRLRQELKKSMEMFNSVCKETVAAKEKARMLQEWKAAEERKLEEARLAEE AAMAVAEAERQKTKAAMEAAQMAQLLADMEAQKRKLAELKAIREAEAKKRALDQLANN KAVYRKYTIDEIEAATGYFASSHKIGEGGYGPVFRATLDHTAVAIKVLRPGISQGQKQ FQQEVEVLSCMRHPHMVLLIGACPEYGCLVYEYMENGSLEDRLFRKDNTPSIPWKTRF RIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPQSFADNA TDYRLTAARGTFCYIDPEYQQTGMLGVKSDLYSFGVVLLQLITSRPPVGLTTQVQVAI EKRTFSEILDPTVPDWPVEEVLSLAKLALQCCELRKRDRPDLASVVLPELNRLRDLGL DYEANNSEKLVYAPRPYKSVPQIRSQESQITVRSGWQRLKSMTKTWKAGCLPPNARAA GKWNKKPGEVGCWSLVSCSGAPPQPRSVKSFSS" CDS complement(join(20537822..20537869,20538345..20539115, 20539448..20539876,20539969..20540070,20540845..20541121, 20541721..20541936,20542496..20542617,20543163..20543371, 20543709..20543889)) /locus_tag="TCM_029084" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene07499; paralog of Thecc1EG037327t1" /codon_start=1 /product="Kinase protein with adenine nucleotide alpha hydrolases-like domain, putative isoform 2" /protein_id="EOY27170.1" /db_xref="TAIR:AT5G12000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S5V0" /translation="MAFSGSATLTMEEIPSITAVAIDRDRNSQLAVKWAVDNLLNNNT GSQCILVHVRSQSLHPHSRTDVAMNSSIGSIMGIFINYLRFLLHLTWARLVFTEDFEA VPKEGRPPTEAELQQFFLPYRGYCARKGIQSKEVVLHDIDVPSALVDYINNNNIGNIV VGASSRNVLTRKLRNPDVPTSLLKSAPESCAVYVISKGKVQFSRLASGPRTDEDNASV NRAPHIKALLSKLTFDSPKIEEFSRTVSSREGSKYRITSDRISDSFKLTPRDKLKTNN GVKSSTPSTGSQTPESPNRISISENSNFSGPPSFRSTDMSGSNSECTAEDFNSLNSLT PRGLETEMRRLRQELKKSMEMFNSVCKETVAAKEKARMLQEWKAAEERKLEEARLAEE AAMAVAEAERQKTKAAMEAAQMAQLLADMEAQKRKLAELKAIREAEAKKRALDQLANN KAVYRKYTIDEIEAATGYFASSHKIGEGGYGPVFRATLDHTAVAIKVLRPGISQGQKQ FQQEVEVLSCMRHPHMVLLIGACPEYGCLVYEYMENGSLEDRLFRKDNTPSIPWKTRF RIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPQSFADNA TDYRLTAARGTFCYIDPEYQQTGMLGVKSDLYSFGVVLLQLITSRPPVGLTTQVQVAI EKRTFSEILDPTVPDWPVEEVLSLAKLALQCCELRKRDRPDLASVVLPELNRLRDLGL DYEANNSEKLVYAPRPYKSVPQIRSQESQEGMTNNPNVEMEIQT" gene complement(20545456..20546358) /locus_tag="TCM_029085" /note="dbxref CacaoGD:Thecc1EG029085" mRNA complement(20545456..20546358) /locus_tag="TCM_029085" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.30 coverage" gene 20545550..20546556 /locus_tag="TCM_029086" /note="dbxref CacaoGD:Thecc1EG029086" mRNA 20545550..20546556 /locus_tag="TCM_029086" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(20545654..20545854) /locus_tag="TCM_029085" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27171.1" /translation="MTRPPLFSPLPCRLLSLQLNPKPTVVSYNHIGALLPVLLTQIKL SPQSPKIASKSINPPIPKIDQN" CDS 20546010..20546276 /locus_tag="TCM_029086" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27172.1" /translation="MKTKAVTDQLFDRFGKEGVPLEGRANQPMRPIDMIDDCYYNRRL QKLMVAIGCSVATDRCTLLVIYSITHKHGLLQTSHLLGEMDTTY" gene 20547253..20551112 /locus_tag="TCM_029087" /note="dbxref CacaoGD:Thecc1EG029087" mRNA join(20547253..20547411,20548107..20549105, 20549478..20549837,20549929..20550034,20550325..20550353) /locus_tag="TCM_029087" /product="Phosphatase 2C 16 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037332t4" /inference="similar to AA sequence:Phytozome:POPTR_0003s04120.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc196t1; inference alignment:Newbler:10:TSA:cgbaL_g07428t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc168t10" mRNA join(20547253..20547411,20547974..20549105, 20549478..20549837,20549929..20550034,20550318..>20550344) /locus_tag="TCM_029087" /product="Phosphatase 2C 16 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037332t4" /inference="similar to AA sequence:Phytozome:POPTR_0003s04120.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc196t6; inference alignment:Newbler:10:TSA:cgbaL_g07428t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc168t10" mRNA join(20547253..20547411,20548143..20549105, 20549478..20549837,20549929..20550034,20550318..>20550344) /locus_tag="TCM_029087" /product="Phosphatase 2C 16 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037332t4" /inference="similar to AA sequence:Phytozome:POPTR_0003s04120.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc196t2; alternateUTRof:Thecc1EG029087t2; inference alignment:Newbler:10:TSA:cgbaL_g07428t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc168t10" mRNA join(20547256..20547411,20548107..20549105, 20549478..20549837,20549929..20550034,20550318..20551112) /locus_tag="TCM_029087" /product="ABI1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s04120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037332t4" /inference="similar to AA sequence:Phytozome:POPTR_0003s04120.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07428t00001" CDS join(20548275..20549105,20549478..20549837, 20549929..20550034,20550318..20550652) /locus_tag="TCM_029087" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037332t4" /codon_start=1 /product="ABI1 isoform 1" /protein_id="EOY27173.1" /db_xref="Phytozome:POPTR_0003s04120.1" /db_xref="TAIR:AT1G72770.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAJ0" /translation="MEEMSPAVAVTLSLANSMCENSGIATHVEITRIKLVTDAANLLS DPAKVMSQESVSSSNRDSGVGKNEGNLATMSASEEGGGEGANFLKILPENGNRSIGAS ESMTQESEEDEILSVDANGIINEGLLVLNAGSDISLPNAEIESGRILAKAIILGESSI EQVPTAEVLLTTVNPDTKTSNEFDLKASELVIQLPSEKNLNRGSRSVFELDCIPLWGS VSIVGKRTEMEDAVAAVPRFIKIPIKMLIGDRVIDGISQSLTDLTGHFFGVYDGHGGS QVANYCRDRIHVALAEEIGSIKGNLCDGTSMESRQVRWEKTFTSCFLKVDDEIGGNVN RGMIGGDEDASDASFEPVAPETVGSTAVVALVCSSHIVVANCGDSRAVLCRGKEAMAL SIDHKPNRDDEYARIEASGGKVIQWKGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFI PRAREDECLILASDGLWDVISNEEACEVARRRILLWHKKNGVPSLVERGKGIDPAAQA AAEYLSMLAVQKGSSDNISVIVVDLKAQRKFKSKP" CDS join(20548275..20549105,20549478..20549837, 20549929..20550034,20550318..>20550343) /locus_tag="TCM_029087" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037332t4" /codon_start=1 /product="Phosphatase 2C 16 isoform 2" /protein_id="EOY27174.1" /db_xref="Phytozome:POPTR_0003s04120.1" /db_xref="TAIR:AT1G72770.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAJ0" /translation="MEEMSPAVAVTLSLANSMCENSGIATHVEITRIKLVTDAANLLS DPAKVMSQESVSSSNRDSGVGKNEGNLATMSASEEGGGEGANFLKILPENGNRSIGAS ESMTQESEEDEILSVDANGIINEGLLVLNAGSDISLPNAEIESGRILAKAIILGESSI EQVPTAEVLLTTVNPDTKTSNEFDLKASELVIQLPSEKNLNRGSRSVFELDCIPLWGS VSIVGKRTEMEDAVAAVPRFIKIPIKMLIGDRVIDGISQSLTDLTGHFFGVYDGHGGS QVANYCRDRIHVALAEEIGSIKGNLCDGTSMESRQVRWEKTFTSCFLKVDDEIGGNVN RGMIGGDEDASDASFEPVAPETVGSTAVVALVCSSHIVVANCGDSRAVLCRGKEAMAL SIDHKPNRDDEYARIEASGGKVIQWKGHRVFGVLAMSRSIGDRYLKPWI" CDS join(20548275..20549105,20549478..20549837, 20549929..20550034,20550318..>20550343) /locus_tag="TCM_029087" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG037332t4" /codon_start=1 /product="Phosphatase 2C 16 isoform 2" /protein_id="EOY27175.1" /db_xref="Phytozome:POPTR_0003s04120.1" /db_xref="TAIR:AT1G72770.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAJ0" /translation="MEEMSPAVAVTLSLANSMCENSGIATHVEITRIKLVTDAANLLS DPAKVMSQESVSSSNRDSGVGKNEGNLATMSASEEGGGEGANFLKILPENGNRSIGAS ESMTQESEEDEILSVDANGIINEGLLVLNAGSDISLPNAEIESGRILAKAIILGESSI EQVPTAEVLLTTVNPDTKTSNEFDLKASELVIQLPSEKNLNRGSRSVFELDCIPLWGS VSIVGKRTEMEDAVAAVPRFIKIPIKMLIGDRVIDGISQSLTDLTGHFFGVYDGHGGS QVANYCRDRIHVALAEEIGSIKGNLCDGTSMESRQVRWEKTFTSCFLKVDDEIGGNVN RGMIGGDEDASDASFEPVAPETVGSTAVVALVCSSHIVVANCGDSRAVLCRGKEAMAL SIDHKPNRDDEYARIEASGGKVIQWKGHRVFGVLAMSRSIGDRYLKPWI" CDS join(20548275..20549105,20549478..20549837, 20549929..20550034,20550325..20550332) /locus_tag="TCM_029087" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG037332t4" /codon_start=1 /product="Phosphatase 2C 16 isoform 4" /protein_id="EOY27176.1" /db_xref="Phytozome:POPTR_0003s04120.1" /db_xref="TAIR:AT1G72770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAJ0" /translation="MEEMSPAVAVTLSLANSMCENSGIATHVEITRIKLVTDAANLLS DPAKVMSQESVSSSNRDSGVGKNEGNLATMSASEEGGGEGANFLKILPENGNRSIGAS ESMTQESEEDEILSVDANGIINEGLLVLNAGSDISLPNAEIESGRILAKAIILGESSI EQVPTAEVLLTTVNPDTKTSNEFDLKASELVIQLPSEKNLNRGSRSVFELDCIPLWGS VSIVGKRTEMEDAVAAVPRFIKIPIKMLIGDRVIDGISQSLTDLTGHFFGVYDGHGGS QVANYCRDRIHVALAEEIGSIKGNLCDGTSMESRQVRWEKTFTSCFLKVDDEIGGNVN RGMIGGDEDASDASFEPVAPETVGSTAVVALVCSSHIVVANCGDSRAVLCRGKEAMAL SIDHKPNRDDEYARIEASGGKVIQWKGHRVFGVLAMSRSIDI" gene 20554114..20556851 /locus_tag="TCM_029088" /note="dbxref CacaoGD:Thecc1EG029088" mRNA join(20554114..20554171,20554796..20554871, 20556049..20556175,20556259..20556376,20556776..20556851) /locus_tag="TCM_029088" /product="Ribosomal protein L18ae family" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016819001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037592t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s20590.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1025t3" CDS join(20554862..20554871,20556049..20556175, 20556259..20556376,20556776..20556829) /locus_tag="TCM_029088" /note="paralog of Thecc1EG037592t1" /codon_start=1 /product="Ribosomal protein L18ae family" /protein_id="EOY27177.1" /db_xref="Phytozome:POPTR_0001s20590.1" /db_xref="TAIR:AT4G26060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SZI0" /translation="MDQKHTTEAVEHRNGEYALIRDAEDPQLGLYDKPLPCFGCGIGW FSLLLGFVFPLMWYYATILYFGNYYHKDPRERAGLAASAIAALICTIAVIITIAVLVF " gene 20561355..20563758 /locus_tag="TCM_029090" /note="dbxref CacaoGD:Thecc1EG029090" mRNA 20561355..20563758 /locus_tag="TCM_029090" /product="Hydroxyproline-rich glycoprotein family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene07504" /inference="similar to AA sequence:ricco:29706.m001321" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4855t1" CDS 20561480..20563141 /locus_tag="TCM_029090" /note="dbxref ricco:29706.m001321" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein, putative" /protein_id="EOY27178.1" /db_xref="TAIR:AT1G72790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N1A5" /translation="MEEDEDVTPFWLQTADNRRIRRRRQPSSLFFNTGILIILLLVVA LAFIFVIIPSFLSFTSQIFKPHLVKKSWDSLNLVLVLFAIICGFLGKNNGNNDSDTRS TYEDYKFSTTPKHDRDHVGRSNPSTPRQWYDYSSSSDRTAYNSLQRLRSSNSYPDLRP ESSWMMNGDDRWRFYDDTPLYNYRSRSRREHDREEVYSNNTKDIAVDTVHRPPPPPSS SPPPAATASSPSPPQSPPPQPPKVVRRKPKRTYEDLKPKERSERKEVINSELKIKHSL PSTPPAARPPPPPPPPPPPSVFEKRSNKSEKKRGGVTKDFLISLRRKKKKQRQRSVEN LDEFFKLSTLPLYPPASPPPPPPPPPPLPSFYQNIFPSKKNKARKNHSVPPPPPPPPL PSVEARASKRESQTPPVTTQKPPLPVKIRNMHNVEESVESGNESPLNPIPPPPPPPPF KMPAWKFEVHGDFVRLKSIRSSRSGSPDLDDPLSCEASPSDGNKTGEMDGGESTTGPL FCPSPDVDTKADNFIARFRAGLKLEKMNSVRGRSNLGPDPGPSTV" gene complement(20564214..20566300) /locus_tag="TCM_029091" /note="dbxref CacaoGD:Thecc1EG029091" mRNA complement(join(20564214..20564642,20564717..20564850, 20566209..20566300)) /locus_tag="TCM_029091" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(20564352..20564642,20564717..20564850, 20566209..20566260)) /locus_tag="TCM_029091" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27179.1" /translation="MGKVKEKSNKLKTPNDIGLVARHAAYVAVMRNAKTANRDGFESL VKAYIEQLMQCTRRNMFYVKYYISCSIFWSDKGKLVSSQGPDIVEEVLNFLISDEVLL SYTLSRFTPQFAMVTVTSKLVQFRDQAIVCGLAGISLEGSEIAWGWLKVCSFCKIG" mobile_element 20566307..20566963 /note="source:CACAO_on_E445_scaffold_2 1 703" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 20567153..20571197 /locus_tag="TCM_029092" /note="dbxref CacaoGD:Thecc1EG029092" mRNA join(20567153..20568066,20568426..20568762, 20569586..20570654,20570750..20571197) /locus_tag="TCM_029092" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040299t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS join(20567709..20568066,20568426..20568762, 20569586..20570654,20570750..20571061) /locus_tag="TCM_029092" /note="paralog of Thecc1EG040299t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY27180.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BMR0" /translation="MQALNLQRKFEMLRMKEKEIVQEFSEKLMKLVNQLRLFGEELTK KHVANKVLVSLPKKFDSKISSLEESRDIARLTLSELINALEAREQRKAFREEDYTDSA FVARTRNLKLGNNSYKRNRSFKAKVKIGNGVFLERVGTGTVAMETDLGYKYITNVYLV PDANQNLLNVGQLTESHYALLFKDRFCTILDPKRDEVLTIEMKNKCYSIDRKHTEHKA FVSSIVDSKLWHRRDIRFDEQSWWNWDKLVFESFGSFSQTSVDEQCETDNDEDIKAEH LAVKGTRSLQDIYSRCNMEVVKPTCYYEAAKDARWLKAMEQEMQMIEKNGTWILVDKP VDQHIIGVKWIYKTKLNADGIVNKFKARLVVKGYSQIYGIDYCETFAPIARHDTIRLL SALAAREGWKILHLYVKSTFLNGYVSEDIYIQKPEGFIKPGTERKVYKLVKALYGLKQ APRAWYDRFDPFLIAEGFVRSLNEHTLYVYKSAKTVVVIISLYVYDLLIIGLDDTAVT ECKSKLIAEFEMTDLGEMHYSLGMQFIQHSEFICIHQGKYATELLKRFHMENSKAVET PLAANCKLRMMELLRLQLLNTEIHFSTAKRVLRYVKGTVNYGLKFEKKDSGNMIGYCD SDWARSLDDARSARGYCFSFGSAIFSWNSKKQEVVAQFSTESKYILAATIANQAIWIR KILGDLGFE" gene complement(20571636..20572580) /locus_tag="TCM_029093" /note="dbxref CacaoGD:Thecc1EG029093" mRNA complement(join(20571636..20572269,20572365..20572580)) /locus_tag="TCM_029093" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029095t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s06650.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage" CDS complement(join(20571964..20572269,20572365..20572430)) /locus_tag="TCM_029093" /note="paralog of Thecc1EG029095t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27181.1" /db_xref="Phytozome:POPTR_0017s06650.1" /translation="MDHKQNVEQFKGQPRLLKYLSESQFLSTGLYGEALWFFPITLAL GSYDRGRNFLFELKFDRENVSELFYSSDEKNQDEYSEISWVKVHVEQSGVHRVESGDE RAARLRKTIENNYFQQQINTV" gene 20573091..20575257 /locus_tag="TCM_029094" /note="dbxref CacaoGD:Thecc1EG029094" mRNA join(20573091..20574402,20575234..20575257) /locus_tag="TCM_029094" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1372t8" CDS 20573399..20573974 /locus_tag="TCM_029094" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27182.1" /translation="MGTLKLLTSTIVIYPGLLESSCEGMSVFREARVKVLYVANPIVM DDVEVPVLGFGGYGRNCTARLPNKGGFKLVCGHPEEYGWTSWYILTSGIDEYVSKFSS FLTEKYWVPWFVKIGNYLSCVQRLFTGCNVYVSKDVNMGGWEIYHKIVADSIKHCNMK TQRIRSLDGLVDARKDFVRLHVYSLVSWSSF" gene complement(20575176..20583315) /locus_tag="TCM_029095" /note="dbxref CacaoGD:Thecc1EG029095" mRNA complement(join(20575176..20575679,20576166..20576243, 20576420..20576497,20576580..20576647,20576759..20576873, 20576973..20577150,20577637..20577734,20577819..20577940, 20578440..20578740,20578825..20579007,20579230..20579343, 20579626..20579742,20579821..20579925,20580091..20580244, 20580773..20580866,20580938..20581124,20581515..20581617, 20581812..20582029,20582122..20582653,20582807..20583315)) /locus_tag="TCM_029095" /product="Aminopeptidase M1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s06650.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037335t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s06650.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1261t4" CDS complement(join(20575488..20575679,20576166..20576243, 20576420..20576497,20576580..20576647,20576759..20576873, 20576973..20577150,20577637..20577734,20577819..20577940, 20578440..20578740,20578825..20579007,20579230..20579343, 20579626..20579742,20579821..20579925,20580091..20580244, 20580773..20580866,20580938..20581124,20581515..20581617, 20581812..20582029,20582122..20582346)) /locus_tag="TCM_029095" /note="paralog of Thecc1EG037335t1" /codon_start=1 /product="Aminopeptidase M1, putative" /protein_id="EOY27183.1" /db_xref="Phytozome:POPTR_0017s06650.1" /db_xref="TAIR:AT4G33090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MXW5" /translation="MDLKQNIEQFKGQPRLPKFAIPKRYDLYLKLDLSACTFSGLVHV DLSIVEPTKFIVLNACELVVRQVFFTNSLNHRFTPCDVVLDSDDEILVLFFDEVLGTG EGVLRIEFSGALNEHLKGLYKWCFISSLFSHKPFVVLFVFGTKKKNTYVDKGVRKNMA VTQFEAVHARRCFPCWDEPALKATFRITLDLPSELMALSNMPIIDEKFDGNVKTIYFE ESPIMSSYLVAVAVGLFDHIEETTADGIKVGVYCPVGKSDEGKFSLEVAVKSLDIFTR YFSMPYPLPKLDMVAVPEFSGGAMENYGLIIFRENEMLHNDLHTTAARKQILTIVVAH EVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKIWNQFLQQTNGGLRLD AQEQSHPIEVEIQHAHSVDEIFDAISYKKGSAVIRMLQGYLGDEIFQKSLGLYIKRYA WNNARTEDLWNVLSEESGIQVNSMMDSWTKQKGYPVVSVKYKDRILEFGQSQFSSSGF HGDGEWTVPIILCLGSYDRRKSFLLESNFEKLDASELFPSSDEKNEDEYGEASWIKVN VEQSGFYRVKYGEELGARLRKAIQKDCLSETDKYGILDDTYALCVACEQSLSSLLSLM DIYRKEIDYIVLSKLIEVCYNVLEVLRDAIPGLVNALKEFFVDVLLFSAEKLGWESAH GENHLNVLMRGEVFMALAALDHVKTHDEAMQRFQAFLDDRGTLLLSADTKRAAYIAVM RNANATSRDGFESLLKIYREADSVQEKERVLRTIASSPEPDILVEVLNFLISDEVRDQ DIIYGLAGISLEGHEIAWRWLKENWNFIIIKYGAGLLLTHFIGNIITPFCSNEKADEI EEFFMSRMRPSFAMNLKRSIEQVRIKAHWAESIKQEQQSLQDLLKQLAHRDEL" gene complement(20583362..20588118) /locus_tag="TCM_029096" /note="dbxref CacaoGD:Thecc1EG029096" mRNA complement(join(20583362..20585907,20588019..20588118)) /locus_tag="TCM_029096" /product="Pyridoxal-5'-phosphate-dependent enzyme family protein" /inference="alignment:exonerate- protein:2:ricco:29706.m001318" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037587t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400008694" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4861t1" CDS complement(20584236..20585798) /locus_tag="TCM_029096" /note="paralog of Thecc1EG037587t1" /codon_start=1 /product="Pyridoxal-5'-phosphate-dependent enzyme family protein" /protein_id="EOY27184.1" /db_xref="Phytozome:PGSC0003DMP400008694" /db_xref="TAIR:AT1G72810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S7B5" /translation="MAAFSLFSPAHIAPKPNLHFIKASTSDLPKTSPLQPSPSTQPQQ PPLKPHHNIREEARLHNAATNSTNHPRFTAKYVPFTAISDPSSSDESYSLDEIVYRSQ SGSLLDVHHDMSALKHFDGAYWRNLFDSRIGKTTWPFGSGVWSKKEWVLPEIDDDDII SAFEGNSNLFWAERYGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMNK PLVGVGCASTGDTSAALSAYCAAAGIPSIVFLPANRISMAQLVQPIANGAFVLSIDTD FDGCMQLIREVTAELPIYLANSLNSLRLEGQKTAAVEIVQQFDWEVPDWVIVPGGNLG NIYAFYKGFSMCKELGLVDRIPRLVCAQAANANPLYLYFKCGWKEFNPVKANTTFASA IQIGDPVSIDRAVHALKNSNGIVEEATEEELMDAMAQADSTGMFTCPHTGVALTALIK LRKSGVIGPTDKTVVVSTAHGLKFTQSKIDYHSKDIKDMACRFANAPVQVKADFGSVM DVLKKYLLSKAH" gene 20589232..20604503 /locus_tag="TCM_029097" /note="dbxref CacaoGD:Thecc1EG029097" mRNA join(20589232..20589826,20590929..20591057, 20592123..20592266,20592385..20592530,20592626..20592782, 20592901..20592959,20593148..20593307,20593425..20593574, 20593662..20593798,20593907..20594053,20594172..20594273, 20594357..20594414,20594492..20594593,20594776..20594813, 20594954..20595080,20595171..20595341,20596098..20596229, 20596357..20596466,20596592..20596652,20597386..20597563, 20598048..20598253,20598424..20598543,20598633..20598731, 20598863..20599084,20599648..20599787,20600160..20600277, 20600353..20600466,20600642..20600812,20600974..20601129, 20601232..20601438,20601995..20602132,20602219..20602289, 20602383..20602482,20602579..20602635,20602741..20602797, 20602881..20602965,20603358..20603440,20603537..20604503) /locus_tag="TCM_029097" /product="Myosin family protein with Dil domain isoform 3" /inference="alignment:exonerate- protein:2:frave:gene16602.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037586t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s20640.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:PASA:2:TSA:puevd3b028135t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc62t14" mRNA join(20589233..20589826,20590929..20591057, 20592123..20592266,20592385..20592530,20592626..20592782, 20592901..20592959,20593148..20593307,20593425..20593574, 20593662..20593798,20593907..20594053,20594172..20594273, 20594357..20594414,20594492..20594593,20594776..20594813, 20594954..20595080,20595171..20595341,20596098..20596229, 20596357..20596466,20596592..20596652,20597386..20597563, 20598048..20598253,20598424..20598543,20598633..20598731, 20598863..20599084,20599648..20599787,20600160..20600277, 20600353..20600466,20600642..20600812,20600974..20601129, 20601232..20601438,20601995..20602132,20602219..20602289, 20602383..20602482,20602579..20602635,20602741..20602797, 20602881..20602961,20603358..20603440,20603537..20604503) /locus_tag="TCM_029097" /product="Myosin family protein with Dil domain isoform 1" /inference="alignment:exonerate- protein:2:frave:gene16602.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037586t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016822001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc62t14" mRNA join(20589328..20589826,20590929..20591057, 20592123..20592266,20592385..20592530,20592626..20592782, 20592901..20592959,20593148..20593307,20593425..20593574, 20593662..20593798,20593907..20594053,20594172..20594273, 20594357..20594414,20594492..20594593,20594776..20594813, 20594954..20595080,20595171..20595341,20596098..20596229, 20596357..20596466,20596592..20596652,20597386..20597563, 20598048..20598253,20598424..20598543,20598633..20598731, 20598863..20599084,20599648..20599787,20600160..20600277, 20600353..20600466,20600642..20600812,20600974..20601129, 20601232..20601438,20601995..20602132,20602219..20602289, 20602383..20602482,20602579..20602623,20602741..20602797, 20602881..20602961,20603358..20603440,20603537..20604380) /locus_tag="TCM_029097" /product="Myosin family protein with Dil domain isoform 2" /inference="alignment:exonerate- protein:2:frave:gene16602.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037586t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016822001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc62t11; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc62t14" CDS join(20589824..20589826,20590929..20591057, 20592123..20592266,20592385..20592530,20592626..20592782, 20592901..20592959,20593148..20593307,20593425..20593574, 20593662..20593798,20593907..20594053,20594172..20594273, 20594357..20594414,20594492..20594593,20594776..20594813, 20594954..20595080,20595171..20595341,20596098..20596229, 20596357..20596466,20596592..20596652,20597386..20597563, 20598048..20598253,20598424..20598543,20598633..20598731, 20598863..20599084,20599648..20599787,20600160..20600277, 20600353..20600466,20600642..20600812,20600974..20601129, 20601232..20601438,20601995..20602132,20602219..20602289, 20602383..20602482,20602579..20602635,20602741..20602797, 20602881..20602961,20603358..20603440,20603537..20603660) /locus_tag="TCM_029097" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037586t1" /codon_start=1 /product="Myosin family protein with Dil domain isoform 1" /protein_id="EOY27185.1" /db_xref="Phytozome:GSVIVT01016822001" /db_xref="TAIR:AT5G20490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K5J1" /translation="MAGPDNIIIGSQGWVEDPNLAWIDGEVVRINGNEVHVKTTNGKT VVTNISKAFPKDTEAPPGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAV NPFQRLPHLYDTHMMEQYKGATFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGA GKTETTKMLMRYLAFLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKF VEIQFDKTGRISGAAIRTYLLERSRVCQISNPERNYHCFYLLCAAPPEDIERYKLGSP KTFHYLNQSNCYELDGVNDAHEYLATRRAMDIVGINDQEQEAIFRVVAAILHLGNINF AKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPEEIITRTLDPEN AVASRDALAKTVYSRLFDWLVDKINISIGQDPNSKSIIGVLDIYGFESFKCNSFEQFC INFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLD EACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTDFTISHYAGEVTYQANQFLDKNK DYVVAEHQALLTASECSFVASLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLSATE PHYIRCVKPNNVLKPAIFENFNIIQQLRCGGVLEAIRISCAGYPTRRTFYDFLNRFGL LAPDVLEGNYDDKTACQMILDKKGLKGYQIGKTKIFLRAGQMAELDARRAEVLGNAAR TIQRQIRTYVARKEFISLHGAAINLQSYLRGNMARKIYEELRKEAGALKIQKNFRRHI DRKSYLTMRKSAITLQTGLRTMTARNEFRFRKQTKAAIIIQAHWRCHQAYSYYQSLQK AVLVSQCGWRCRVARRELRKLKMAARETGALKAAKDKLEKRVEELTWRLQLEKRLRTD LEEAKAQEIAKLQDALHEKQLQVEEANSMVIKEREAARKAIEEAPPVIKETPVIVQDT ERINSLISEVEKLKALLLAEKQTAEEAKQAHAATQAKNGELTKKLEDAEKRAEHLQDS VHRLEEKLSNLESENQVLRQQALTMSPTGKALTARPRTTIIQRSPENGNVLNEEIKKA LPKPQVPETEEKPQKFLNEKQQENQELLIKCISQDLGFSGGKPVAACLIYKCLLHWRS FEVERTSIFDRIIQAIGISIEAPDNNDLLSYWLSNSSTLLLLLQRTLKASGAASLTPQ RRRSTSASLFGRMSQGLRGSPQSAGFSFLNGRVLGGLDDLRQVEAKYPALLFKQQLTA FLEKIYGMIRDNLKKEIAPVLASCIQAPRTSRASLVKGRSQANAVAQQALIAHWQSIV KSLNNYLKTMRANYVPSFLVCKVFTQTFSFINVQLFNSLLLRRECCSFSNGEYVKAGL AELEHWCHDATEEFAGSAWDELKHIRQAVGFLVIHQKPKKTLKEITNDLCPVLSIQQL YRISTMYWDDKYGTHSVSSDVIASMRVMMTEDSNNAVSSSFLLDDDSSIPFSVDDISK SMQQIEVAEIDPPPLIRGNSGFTFLLQHSE" CDS join(20589824..20589826,20590929..20591057, 20592123..20592266,20592385..20592530,20592626..20592782, 20592901..20592959,20593148..20593307,20593425..20593574, 20593662..20593798,20593907..20594053,20594172..20594273, 20594357..20594414,20594492..20594593,20594776..20594813, 20594954..20595080,20595171..20595341,20596098..20596229, 20596357..20596466,20596592..20596652,20597386..20597563, 20598048..20598253,20598424..20598543,20598633..20598731, 20598863..20599084,20599648..20599787,20600160..20600277, 20600353..20600466,20600642..20600812,20600974..20601129, 20601232..20601438,20601995..20602132,20602219..20602289, 20602383..20602482,20602579..20602623,20602741..20602797, 20602881..20602961,20603358..20603440,20603537..20603660) /locus_tag="TCM_029097" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037586t1" /codon_start=1 /product="Myosin family protein with Dil domain isoform 2" /protein_id="EOY27186.1" /db_xref="Phytozome:GSVIVT01016822001" /db_xref="TAIR:AT5G20490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K5J1" /translation="MAGPDNIIIGSQGWVEDPNLAWIDGEVVRINGNEVHVKTTNGKT VVTNISKAFPKDTEAPPGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAV NPFQRLPHLYDTHMMEQYKGATFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGA GKTETTKMLMRYLAFLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKF VEIQFDKTGRISGAAIRTYLLERSRVCQISNPERNYHCFYLLCAAPPEDIERYKLGSP KTFHYLNQSNCYELDGVNDAHEYLATRRAMDIVGINDQEQEAIFRVVAAILHLGNINF AKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPEEIITRTLDPEN AVASRDALAKTVYSRLFDWLVDKINISIGQDPNSKSIIGVLDIYGFESFKCNSFEQFC INFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLD EACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTDFTISHYAGEVTYQANQFLDKNK DYVVAEHQALLTASECSFVASLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLSATE PHYIRCVKPNNVLKPAIFENFNIIQQLRCGGVLEAIRISCAGYPTRRTFYDFLNRFGL LAPDVLEGNYDDKTACQMILDKKGLKGYQIGKTKIFLRAGQMAELDARRAEVLGNAAR TIQRQIRTYVARKEFISLHGAAINLQSYLRGNMARKIYEELRKEAGALKIQKNFRRHI DRKSYLTMRKSAITLQTGLRTMTARNEFRFRKQTKAAIIIQAHWRCHQAYSYYQSLQK AVLVSQCGWRCRVARRELRKLKMAARETGALKAAKDKLEKRVEELTWRLQLEKRLRTD LEEAKAQEIAKLQDALHEKQLQVEEANSMVIKEREAARKAIEEAPPVIKETPVIVQDT ERINSLISEVEKLKALLLAEKQTAEEAKQAHAATQAKNGELTKKLEDAEKRAEHLQDS VHRLEEKLSNLESENQVLRQQALTMSPTGKALTARPRTTIIQRSPENGNVLNEEIKKA LPKPQVPETEEKPQKFLNEKQQENQELLIKCISQDLGFSGGKPVAACLIYKCLLHWRS FEVERTSIFDRIIQAIGISIEAPDNNDLLSYWLSNSSTLLLLLQRTLKASGAASLTPQ RRRSTSASLFGRMSQGLRGSPQSAGFSFLNGRVLGGLDDLRQVEAKYPALLFKQQLTA FLEKIYGMIRDNLKKEIAPVLASCIQAPRTSRASLVKGRSQANAVAQQALIAHWQSIV KSLNNYLKTMRANYVPSFLVCKVFTQTFSFINVQLFNSLLLRRECCSFSNGEYVKAGL AELEHWCHDATEEFAGSAWDELKHIRQAVIHQKPKKTLKEITNDLCPVLSIQQLYRIS TMYWDDKYGTHSVSSDVIASMRVMMTEDSNNAVSSSFLLDDDSSIPFSVDDISKSMQQ IEVAEIDPPPLIRGNSGFTFLLQHSE" CDS join(20589824..20589826,20590929..20591057, 20592123..20592266,20592385..20592530,20592626..20592782, 20592901..20592959,20593148..20593307,20593425..20593574, 20593662..20593798,20593907..20594053,20594172..20594273, 20594357..20594414,20594492..20594593,20594776..20594813, 20594954..20595080,20595171..20595341,20596098..20596229, 20596357..20596466,20596592..20596652,20597386..20597563, 20598048..20598253,20598424..20598543,20598633..20598731, 20598863..20599084,20599648..20599787,20600160..20600277, 20600353..20600466,20600642..20600812,20600974..20601129, 20601232..20601438,20601995..20602132,20602219..20602289, 20602383..20602482,20602579..20602635,20602741..20602797, 20602881..20602965,20603358..20603389) /locus_tag="TCM_029097" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG037586t1" /codon_start=1 /product="Myosin family protein with Dil domain isoform 3" /protein_id="EOY27187.1" /db_xref="Phytozome:POPTR_0001s20640.1" /db_xref="TAIR:AT5G20490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K5J1" /translation="MAGPDNIIIGSQGWVEDPNLAWIDGEVVRINGNEVHVKTTNGKT VVTNISKAFPKDTEAPPGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAV NPFQRLPHLYDTHMMEQYKGATFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGA GKTETTKMLMRYLAFLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKF VEIQFDKTGRISGAAIRTYLLERSRVCQISNPERNYHCFYLLCAAPPEDIERYKLGSP KTFHYLNQSNCYELDGVNDAHEYLATRRAMDIVGINDQEQEAIFRVVAAILHLGNINF AKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPEEIITRTLDPEN AVASRDALAKTVYSRLFDWLVDKINISIGQDPNSKSIIGVLDIYGFESFKCNSFEQFC INFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLD EACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTDFTISHYAGEVTYQANQFLDKNK DYVVAEHQALLTASECSFVASLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLSATE PHYIRCVKPNNVLKPAIFENFNIIQQLRCGGVLEAIRISCAGYPTRRTFYDFLNRFGL LAPDVLEGNYDDKTACQMILDKKGLKGYQIGKTKIFLRAGQMAELDARRAEVLGNAAR TIQRQIRTYVARKEFISLHGAAINLQSYLRGNMARKIYEELRKEAGALKIQKNFRRHI DRKSYLTMRKSAITLQTGLRTMTARNEFRFRKQTKAAIIIQAHWRCHQAYSYYQSLQK AVLVSQCGWRCRVARRELRKLKMAARETGALKAAKDKLEKRVEELTWRLQLEKRLRTD LEEAKAQEIAKLQDALHEKQLQVEEANSMVIKEREAARKAIEEAPPVIKETPVIVQDT ERINSLISEVEKLKALLLAEKQTAEEAKQAHAATQAKNGELTKKLEDAEKRAEHLQDS VHRLEEKLSNLESENQVLRQQALTMSPTGKALTARPRTTIIQRSPENGNVLNEEIKKA LPKPQVPETEEKPQKFLNEKQQENQELLIKCISQDLGFSGGKPVAACLIYKCLLHWRS FEVERTSIFDRIIQAIGISIEAPDNNDLLSYWLSNSSTLLLLLQRTLKASGAASLTPQ RRRSTSASLFGRMSQGLRGSPQSAGFSFLNGRVLGGLDDLRQVEAKYPALLFKQQLTA FLEKIYGMIRDNLKKEIAPVLASCIQAPRTSRASLVKGRSQANAVAQQALIAHWQSIV KSLNNYLKTMRANYVPSFLVCKVFTQTFSFINVQLFNSLLLRRECCSFSNGEYVKAGL AELEHWCHDATEEFAGSAWDELKHIRQAVGFLVIHQKPKKTLKEITNDLCPVLSIQQL YRISTMYWDDKYGTHSVSSDVSNCEYESYDD" gene 20604618..20640293 /locus_tag="TCM_029098" /note="dbxref CacaoGD:Thecc1EG029098" mRNA join(20604618..20605197,20605506..20605631, 20606142..20606458,20607031..20607115,20607569..20607843, 20607938..20608141,20608297..20608466,20609430..20609539, 20609649..20609768,20610351..20610426,20611196..20611318, 20611397..20611496,20611573..20611669,20611781..20611915, 20612003..20612059,20612138..20612314,20612444..20612569, 20612651..20614408,20615273..20615313,20615401..20615596, 20615681..20615785,20615882..20615946,20616095..20616185, 20616439..20616632,20616712..20616766,20617305..20617449, 20618459..20618532,20619572..20619716,20620175..20620273, 20620356..20620456,20620550..20620639,20620718..20620783, 20620911..20621075,20621170..20621377,20621495..20622378, 20622469..20623986,20624113..20624290,20624398..20624466, 20625203..20625285,20625422..20625670,20625755..20625890, 20625970..20626055,20626135..20626220,20626661..20626802, 20626883..20626969,20627225..20627348,20627454..20627608, 20628149..20628262,20628361..20628510,20628609..20628788, 20628883..20629068,20629160..20629261,20629341..20629565, 20629652..20629774,20630079..20630160,20630242..20630372, 20630478..20630642,20631131..20631206,20631297..20631409, 20631850..20631929,20632003..20632116,20632394..20632462, 20632559..20632715,20632830..20632993,20633091..20633185, 20633340..20633572,20633664..20633909,20634095..20634313, 20634400..20634558,20634635..20634850,20635026..20635337, 20635434..20635580,20635974..20636180,20636269..20638017, 20638123..20638404,20638571..20638750,20638870..20638968, 20639055..20639195,20639311..20640293) /locus_tag="TCM_029098" /product="Midasin, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G67120.1" /inference="similar to AA sequence:Phytozome:POPTR_0017s06640.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc598t1" mobile_element complement(20605396..20605436) /note="source:CACAO_M_S_E144962_F231_scaffold_10 1447 1487" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(20605527..20605631,20606142..20606458, 20607031..20607115,20607569..20607843,20607938..20608141, 20608297..20608466,20609430..20609539,20609649..20609768, 20610351..20610426,20611196..20611318,20611397..20611496, 20611573..20611669,20611781..20611915,20612003..20612059, 20612138..20612314,20612444..20612569,20612651..20614408, 20615273..20615313,20615401..20615596,20615681..20615785, 20615882..20615946,20616095..20616185,20616439..20616632, 20616712..20616766,20617305..20617449,20618459..20618532, 20619572..20619716,20620175..20620273,20620356..20620456, 20620550..20620639,20620718..20620783,20620911..20621075, 20621170..20621377,20621495..20622378,20622469..20623986, 20624113..20624290,20624398..20624466,20625203..20625285, 20625422..20625670,20625755..20625890,20625970..20626055, 20626135..20626220,20626661..20626802,20626883..20626969, 20627225..20627348,20627454..20627608,20628149..20628262, 20628361..20628510,20628609..20628788,20628883..20629068, 20629160..20629261,20629341..20629565,20629652..20629774, 20630079..20630160,20630242..20630372,20630478..20630642, 20631131..20631206,20631297..20631409,20631850..20631929, 20632003..20632116,20632394..20632462,20632559..20632715, 20632830..20632993,20633091..20633185,20633340..20633572, 20633664..20633909,20634095..20634313,20634400..20634558, 20634635..20634850,20635026..20635337,20635434..20635580, 20635974..20636180,20636269..20638017,20638123..20638404, 20638571..20638750,20638870..20638968,20639055..20639195, 20639311..20639343) /locus_tag="TCM_029098" /codon_start=1 /product="Midasin, putative" /protein_id="EOY27188.1" /db_xref="Phytozome:POPTR_0017s06640.1" /db_xref="TAIR:AT1G67120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MXW7" /translation="MAMDGSFSLELSLQWFFARCPKVGRGPRFELLAKKGHLVTEEEV VSSVAELLLHPKYTIPLIGCFRPIAQKIVDKAVTLLLLVQNLRSNSDNNITESGYFDD DEVINLIEFHIQHEKGLDLHELACLAFCRAIDLAPFLLGSVLNYFKFAPPPFERILMK GSVFELSGKVITYYLHVVRTSYRLLVMETEFFSKYWDWSCFLDLVKKVVILDQGSDVK FEKDIADIRWCAIQILSVILKMNDRATSKFGVGAEEAHSCLLRWEEFCQDIAVEKAGA YIRTFEHISSDSEKGELCFSQDNCLQSFGRCSFTSSQFHETEPPLRSRKLVEWDDKSA GNPFVMTSSLNRSFERVLLAVSQKWPVLLYGPAGAGKSALIRKMAHDCGNQVLSIHMD DQIDGKTLIGSYVCTEQPGEFRWQPGSLTQAVVNGFWVVFEDIDKAPSDVLSMILPLL EGSSLFVTGFGEEIRVAESFRLFSTISTFKSDISHGIGANLNGVLWRKVMIEPPSSQD LQKIVRAWYPSLEPLVAKLLETFEGVNSISVHQVVGFQPGNSVSLSSPSKFSSRDLLK WCKRIAGLHFVSTLDVLTSFECFCIYQEAVDVFACFSTSVGNRLTIMKDIAKKWGVSI SQAETLYPNDEPIIQDLLSELRIGRVTLQRAEATLYDEKRPFVKIHSSLHVLERIACS VKYNEPVLLVGETGTGKTTLVQNLAMRLGQKLTVLNLSQQSDVADLLGGFKPMDAQSI CIPLYNEFKFLFSKAFSMKDNHGLFARLQELLCSKNWEKLLRKLKNGVNLFRKLVEEE RSGSARKRKKPLDVEKKVKAWEELSARLETARRQIASTGMVFSFVEGVFVTALRNGQW ILLDEMNLAPPEILQRVIGVLEGENGSLCLAERGDVSNINRHPNFRVFACMNPATDAG KRDLPYALRSRFTEYFVDDILDDHDLDIFIQKFLGDSGSNSELVEKIRRFYKIAKKDS EERLQDGANQKPQYSLRSLYRALEFTRKAERKFGFQNAIYDGFCMFFVSLLDRPSAKK MKQRILQNLIEKKPLHVPFHHYLLVKEDSSSDEFLKNYVLTKSVKKHLRNLSRAVFIK RYPVLLQGPTSSGKTSLVQYLATITGHEFVRINNHEHTDLQEYLGSYIVNAHGKLVFQ EGVLVKAVRNGYWIVLDELNLAPTDVLEALNRLLDDNRELFVPELCETIRAHPDFMLF ATQNPPTFYGGRKMLSRAFRNRFVEIHVDEIPEDELSTILKQRCQIPESYAKKMVEVM KELQLHRQSSKVFAGKHGFITPRDLFRWADRFRISGISYEDLARDGYHLLAERLRVED EKHVVQEVLERHLRVKLVKDDLYKPELLGEDPVPESLGNVILTKSMRRLYFLVRRCYK FREPVLLVGETGGGKTTVCQLLSIALGLNLHILNCHQYTETSDFLGGFYPIRDRSRLS SEYKCVIERLKLLTAHIDFPQDLDIFSDICHASSTLDQLDVVINKLVIYSVDEISLAD DSVLERLNSVLEPERKLSLAEKGGDVLEKVTAHENFLVLATMNPGGDYGKKELSPALR NRFTEIWVPSVGDLNELRNIALYRLSRLELSYIVNPMVNFYEWFNQLQIGRFLTVRDL LSWIAFVNVSKLDPEHSFLHGAFLVLLDGLSLGTGLSKKDCGDLRERCLSFLLELLQV DSTNLLYSKLSKMENYGWGDLETPVEINTDSTLCDNVFSIDPFYIEKGSEKSEAGGFE FLAPTTRKNALRVLRAMQLSKPVLLEGSPGVGKTSLIIALGKFSGHRVVRINLSEQTD MMDLLGSDLPVESDEGMKFAWSDGILLQALKEGCWVLLDELNLAPQSVLEGLNAILDH RAEVFIPELGCTFRCPSSFRVFACQNPSCQGGGRKGLPKSFLNRFTKVYIDELVEEDY LFICSSLYLSIPRPVLSNLISFNRRLHEDTMLYHKFAQNGSPWEFNLRDVLRSCQILQ GTPGKVGGFLNLIYVQRMRTAADRRQVLQLYEQIFGVKPSINPYPRVQLNSDYLIVGN VAIKRNFKRLSRNSNQLKVLPSVRCNLEAAAHCVQQGWLCILIGPPSSGKTSLIRLLA QLTGNVLHELNLSSATDISELLGCFEQYNAFRNFRSVVAQVGRFVNEYSSLLLEISME TFLSDRKDLTARWLAFLSDLESDIMPSFSFVNPETWNSIYKSLPSLIEIIKQLKSDLE KNVLPISWTSEYLDRAMKTILKLQHHQRMPYFAKFEWITGLLINAIENGEWIILENAN LCNPTVLDRINSLVEPDGTITVNECGIVDGKPVVLHPHSNFRMFLTVNPSFGEVSRAM RNRGVEIFMMNPYWIFDEGSGYNSEELEMEDVKRFLVLAGIPGSKLVDSMAKAHAYAM VEGVRLNVRITYLELARWVQLFQHLLMNGNQPLWSLQISWDHTYLSSFGEVEGVNIVN YAKNAYFSVTELYRSDLSLGRALCLPGGWPIPLTLRDIVWYSKEVYVRQNCSYLEFLG AQYASHELAISCGICPVEDVLRRRGCKGTYLLDWKMLYGTTYPQVSRGITSDSDGKTE FNSNIANKMMLFAANWAIEQATENDFQLYLQWFTWFGFQLEPYCDFFKYFLTSLEQEW RHPIWTSIIKCRQELMSLNQIDIDLHPIPMLSLELVDLTSSNHLSNASSKPLHDAISC VGLLRRSYQQWNVESRHNYTDESSCFIPFLETLRVLEEEILNMLVGSPSYDLLYQLYT NLLEDHMLFWEGLISWQFERLLISWRSLLKVAGKLKEFCPIAVKNMLETKNLAEVSSL CFHPERSLLWVHGGHPFLPPSSKLYHQQHQLLKFCELVWPTKRKLFKQAVNELLVETM VSFDPELRFLALEGICMSSFIMGNCDEDEIHVSHQMEEVYQMLLKRFDYEKCKLLIKN GPDDAIFEEISATCCVLSSEMLHMRSGFDSWLDILPIVDCASCFLDMELLQELSSLTL VGNGELQLGLGCLSSLLESDLKYSLTYSTRPPQSFVPHQKLLWLHDAWTSVDAVHAKV SGFVLEMWFWWHSLLWSQCPAFVKNFSIIDGYSVPLPNVLIQPVRTASIAKILQSTHG IKDFSMHCLKLKAASCVLWQISSPRINSHSFLLSAARSLFQQIIYSHKKCFDAEKFAA IKSILCSYPSGVTEESLGLVSLLIASSSHRSLKSLIQLFIEPLLRRLYFNCSSTESYL NLGFAWLYIGGLRFNLLLSCDNLDPASKYSCKLSCLEEKIISHKLEMKVRQECNYLAG WSSSKETDKRISQALEKLEIKCRKLRRKIVFRPDPAKFKALRKECDEFCVLVNSLMSL VNNIEVMELQQIVDKVCNWQETASCFIDRLLNEYSEYIDIAQPIQVAVYEMKLGLALA LLSALQKKFLDRIQEDNMDRVMELIYSFMRFPRGCTSELVSISDRRRLLIFSSLDIPC ITNFSEMELSLLENMVTISGDVIAEKVSILQLKASLYKNCLVRVAHSVATAKLMDSAS FKLLDKIFSGFASIWMHMKIQGKNQEDRDCQPYKFRPRAFRIENVMEVDISALGKLLA NDNFIDWQELLSEEESTKMMEDGEKHENIEDEWNLMEESILIFMINMHNQLFGSADLV LSPGSFQITDVDRLQSFIGSYTLGVGMMKGFGGLFSSTLDAKLVQEHLLRLCWEYEQK FPSPHKAAFKYNFYKDSNTHIMAKMVELLSTLKHRVHTLLSEWEDHPGLQKVLDVIEM LLAIPLSTPLAKALSGLQFLLNRTRILEENGSKFSLSVQLKPLISLVCSWQKMEFCSW PVLLDEVQDQYDINAAKLWFPLFSVLHPRHSSDIAGHDQSTIQSLEEFMQTSSIGEFR KRLQLLFAFLGQIITGRSLEIYLSPWQEENIKILYNIFGFYVQFLPIVMELIEANRKK IETELKELLKLCCWDRFDSQLSIDNLRKPRQKIQKLIQKYSDMLQQPFMLILNEEVRQ KGFKIVSLESPKPLIDISESCRMLNDFLNLTQSNDEYRSAWYTEWGQKVNDTLNLHLQ RISELHFVKSEEISGAIRQCPISQFACLSYPNEWKRVWYMLKSIGIMAKGCGDRWMDV NRSLGKKRALSDLLQLLESSGLHRHKFEILEISNPSSWLFLQPSYDAQHLLMKQTRLP NGVADVASAVEKCFPKETLDSEWKTANEFYFKSLAAVQLLQQIRLKHHPDFTSEQVTR SVSYLSHLIIIQQMQRAAVYDFARQLKTLHEYATALDSSYSGCTDFENTNGGCVFAKS QHAIFNCMWQQKQLFDDLDAMLVEETLLLRTVEGTHSNSCQKVKAAANRILGFIEGFI PVFKKSKELLDSYFIGCDGSIITLAGTIRLYVISKQMEKVVLQNFKVLQEFEDQLIKQ SFEKSSVVESVLSHFDERFSKGKLIAEQLRLALEMGNESKYLHELADSCCEKCPKLEA QFGDAFKGTIRHVIDVLQKLSSLDNHGSQPEAPSGSITAWESLFKSTIANLGVDTLCE KLLETIHFAENLFNHSSMKVSGQSFHIGALLKHIHASVDLILSFSDSFLEDFLVMHKT VSIVTHGLANILAALFAKGFGDSPKDQEDDTSHDMTQDASGTGMGEGAGVNDVSDQIN DEDQLLGASEKPSEEQAAPNDVPSKNEKGIEMEQDFAADTFSVSEDSGEDNDEDTEDQ QLESAMGETGGNSEVIDEKLWDKDDDDDPNNNEKYESGPSVRDSDKNSREFRAKEDSA GTAEEPEENKMDELDKETGEIENQADLDEHENIEDLNFNKEEEFADPTGLKLDELNER YSEDINMDEKEEVDIKEKDGEDEEEESANDGNTEGNLNPADETMEEIESERNNGTSEK DERVDATFEKDDLGRDEEDPKINQMAGRKNVPESEISNISGDHVPSEGAATQPNSEAL ELRNVAPEANWANSSDNYNDLAQRNFPSGNNSDLNIMVADSSTSGKFTDDHPKTEFPS QDADPFQKKQSNPYRNVGDALQEWKERVSISVDLQDDKKSQGEMEDENANEYGYVSEF EKGTAQALGPATAEQIDADVNVNKPDKNPLVESGDDVTNMEIDEQISEDDPIKHCSSI IKNKMEEQIQVSKFDESANHRSPRVHGPSDGDPGNFSEFLVSVKKSYLSDDVYQINKL SISEEEMGKALDPEEVSGDVKNNATALWRKYELLTTRLSQELAEQLRLVMEPTLASKL QGDYKTGKRLNMKKVIPYIASHYRKDKIWLRRTRPNKRDYQVIIAVDDSYSMSESGCG EVAIKALVTVCRAMSQLEVGNLAVASFGKKGNIRLLHDFDQPFTGEAGVKMISSLTFK QDNTIRDEPVVDLLMFLNKKLDAAVANARLPSGQNPLQQLVLIIGDGRLYEKEKLKRC VRDVLSSKRMVAFLILDSLQESIMDLQEVITTQDKNNQFKILVSKYLDSFPFPYYVVL RNIEALPKTLADLLRQWFELMQNSRD" mobile_element complement(20619146..20619207) /note="source:scaffold_9_CACTA_0932 9185 9245" /mobile_element_type="transposon:TIR/CACTA" gene 20640856..20643228 /locus_tag="TCM_029099" /note="dbxref CacaoGD:Thecc1EG029099" mRNA join(20640856..20641068,20641330..20643228) /locus_tag="TCM_029099" /product="Mitochondrial substrate carrier family protein" /inference="alignment:exonerate- protein:2:ricco:29706.m001309" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037351t1" /inference="similar to AA sequence:ricco:29706.m001309" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1173t9" CDS 20641426..20642466 /locus_tag="TCM_029099" /note="dbxref ricco:29706.m001309; paralog of Thecc1EG037351t1" /codon_start=1 /product="Mitochondrial substrate carrier family protein" /protein_id="EOY27189.1" /db_xref="TAIR:AT1G72820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXY6" /translation="MNLSAAEEESAQEIHIPADIDWEMLDKSKFFLLGAALFSGVSAT LYPVVLVKTRQQVAQTQLSGIRTALSIVKHEGFRALYRGFGTSLTGTIPARALYMAAL EVTKSNVGSATVKLGVPEPSAAAIANAVAGLSAAMAAQLVWTPIDVVSQRLMVQGSHP SCSSPCRYVNGIDAFRKIINTDGPKGLYRGFGISIITYAPSNAVWWASYSVAQRFVWG GIGCYFWKKDDESNENGSSNNNTIRPDSKTVMAVQGVSAALAGGVSALITMPLDTIKT RLQVLDGEENGRRGPTIAQTVRNLVKEGGWFACYRGLGPRWASMSMSATTMITTYEFL KRLSAKNQGSLM" gene 20643351..20643861 /locus_tag="TCM_029100" /note="dbxref CacaoGD:Thecc1EG029100" mRNA 20643351..20643861 /locus_tag="TCM_029100" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc194t6" CDS 20643500..20643778 /locus_tag="TCM_029100" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27190.1" /translation="MNPNLSSYGSSRSGWTKYLNFSGLTQLTELAHASPVSPNSTARD TFVFTCLFCYETSIIMKRIFNQLGRIEPFYTLQNSLSNQKISKCFTRE" gene complement(20643836..20648940) /locus_tag="TCM_029101" /note="dbxref CacaoGD:Thecc1EG029101" mRNA complement(join(20643836..20643860,20643962..20644247, 20644637..20644772,20645689..20645917,20647463..20647495, 20648500..20648940)) /locus_tag="TCM_029101" /product="ALF domain class transcription factor" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s23990.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037580t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s05470.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16201t2" CDS complement(join(20643987..20644247,20644637..20644772, 20645689..20645917,20647463..20647495,20648500..20648599)) /locus_tag="TCM_029101" /note="paralog of Thecc1EG037580t1" /codon_start=1 /product="ALF domain class transcription factor" /protein_id="EOY27191.1" /db_xref="Phytozome:POPTR_0018s05470.1" /db_xref="TAIR:AT5G20510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIL8" /translation="MEGEGAQYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDP EKENLCLYGFPGEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAW LLSVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGAAKKQTKEKSSVSNHSSNKS KSNSKARESQAKFSKASQPKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDVC EKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP" gene complement(20649097..20650013) /locus_tag="TCM_029102" /note="dbxref CacaoGD:Thecc1EG029102" mRNA complement(20649097..20650013) /locus_tag="TCM_029102" /product="ATPase, F0/V0 complex, subunit C protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035132t1" /inference="similar to AA sequence:Phytozome:POPTR_0002s08330.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage" CDS complement(20649493..20649759) /locus_tag="TCM_029102" /note="paralog of Thecc1EG035132t1" /codon_start=1 /product="ATPase, F0/V0 complex, subunit C protein" /protein_id="EOY27192.1" /db_xref="Phytozome:POPTR_0002s08330.1" /db_xref="TAIR:AT1G19910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P59227" /translation="MRPELVMKAIVPVVMAGVLGIYGLIIAVIIGTGINPKANSYYLS DGYAHLSSGIAGIPIGIVGDAGVRTNAQQPQLGFCWDDPHSHLC" mobile_element 20650067..20650231 /note="source:scaffold_7_CACTA_0795 3148 3310" /mobile_element_type="transposon:TIR/CACTA" gene complement(20650785..20655685) /locus_tag="TCM_029103" /note="dbxref CacaoGD:Thecc1EG029103" mRNA complement(join(20650785..20651958,20652080..20652250, 20653192..20653266,20653356..20653468,20653905..20654321, 20655414..20655685)) /locus_tag="TCM_029103" /product="Nuclear transcription factor Y subunit A-3, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g04050.1" /inference="similar to AA sequence:ricco:29706.m001307" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b028141t1a2; inference alignment:Newbler:10:TSA:cgbaL_g05805t00001" mRNA complement(join(20651268..20651958,20652080..20652253, 20653192..20653266,20653356..20653468, 20655414..>20655571)) /locus_tag="TCM_029103" /product="Nuclear transcription factor Y subunit A-3, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g04050.1" /inference="similar to AA sequence:frave:gene07522" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01998t00002; inference alignment:Newbler:10:TSA:cgbaL_g05805t00001" mRNA complement(join(20651354..20651958,20652080..20652253, 20653192..20653266,20653356..20653468,20653905..20654321, 20655414..20655564)) /locus_tag="TCM_029103" /product="Nuclear transcription factor Y subunit A-3, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g04050.1" /inference="similar to AA sequence:ricco:29706.m001307" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g05805t00001; inference alignment:Newbler:10:TSA:cgbaL_g05805t00001" CDS complement(join(20651596..20651958,20652080..20652253, 20653192..20653266,20653356..20653468, 20655414..>20655570)) /locus_tag="TCM_029103" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene07522" /codon_start=1 /product="Nuclear transcription factor Y subunit A-3, putative isoform 3" /protein_id="EOY27195.1" /db_xref="TAIR:AT1G72830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S5T3" /translation="KKGRRPRREKSELFIFCCEQGRERDSERHAQIQASRTTPTCVIS LSLLPNPKGGNETHGSLFGGHAKLASSMGTQDCVFPPSRVDYSKSTAHIPLHYAEPYF GGAVAAAYGLQAVQIHHPHMMAMVPARVPLPLDLTEDEPIYVNAKQYRAILRRRQFRA KLEAQNKLIKARKPYLHESRHLHALKRARGNGGRFLNTKQFQESEHIPSSHGLDMSRS TQLDLSAKISVSEVHQLENYKDAASTTSCSDITSASNSDEMFQQPDFRFSGYPSHNGG AMQGHGGGNLHHLSGLC" CDS complement(join(20651596..20651958,20652080..20652250, 20653192..20653266,20653356..20653468,20653905..20654205)) /locus_tag="TCM_029103" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29706.m001307" /codon_start=1 /product="Nuclear transcription factor Y subunit A-3, putative isoform 2" /protein_id="EOY27194.1" /db_xref="TAIR:AT1G72830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S5T3" /translation="MQNLHKKDSGVSSHSTCTYVVGCSSWGNSTETHVQQSSVSESLS LKMGVLPQHFQHTKQLSFQFQDQDSSSTQSTGQSYPEAASAGDSNIYGQSLISASSGG NETHGSLFGGHAKLASSMGTQDCVFPPSRVDYSKSTAHIPLHYAEPYFGGAVAAAYGL QAVIHHPHMMAMVPARVPLPLDLTEDEPIYVNAKQYRAILRRRQFRAKLEAQNKLIKA RKPYLHESRHLHALKRARGNGGRFLNTKQFQESEHIPSSHGLDMSRSTQLDLSAKISV SEVHQLENYKDAASTTSCSDITSASNSDEMFQQPDFRFSGYPSHNGGAMQGHGGGNLH HLSGLC" CDS complement(join(20651596..20651958,20652080..20652253, 20653192..20653266,20653356..20653468,20653905..20654205)) /locus_tag="TCM_029103" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29706.m001307" /codon_start=1 /product="Nuclear transcription factor Y subunit A-3, putative isoform 1" /protein_id="EOY27193.1" /db_xref="TAIR:AT1G72830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S5T3" /translation="MQNLHKKDSGVSSHSTCTYVVGCSSWGNSTETHVQQSSVSESLS LKMGVLPQHFQHTKQLSFQFQDQDSSSTQSTGQSYPEAASAGDSNIYGQSLISASSGG NETHGSLFGGHAKLASSMGTQDCVFPPSRVDYSKSTAHIPLHYAEPYFGGAVAAAYGL QAVQIHHPHMMAMVPARVPLPLDLTEDEPIYVNAKQYRAILRRRQFRAKLEAQNKLIK ARKPYLHESRHLHALKRARGNGGRFLNTKQFQESEHIPSSHGLDMSRSTQLDLSAKIS VSEVHQLENYKDAASTTSCSDITSASNSDEMFQQPDFRFSGYPSHNGGAMQGHGGGNL HHLSGLC" gene complement(20658692..20667484) /locus_tag="TCM_029104" /note="dbxref CacaoGD:Thecc1EG029104" mRNA complement(join(20658692..20659197,20659347..20659616, 20659702..20659800,20660518..20660661,20660837..20661162, 20661319..20661352,20661529..20661598,20661779..20661906, 20663266..20663505,20663605..20663782,20664402..20664592, 20664826..20664962,20665107..20665268,20665338..20665496, 20666782..20666833,20667201..20667484)) /locus_tag="TCM_029104" /product="CTC-interacting domain 3, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016786001" /inference="similar to AA sequence:ricco:29706.m001306" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b028142t1a2; alternateUTRof:Thecc1EG029104t2; inference alignment:Newbler:10:TSA:cgbaB_g04373t00001" mRNA complement(join(20658692..20659197,20659566..20659616, 20659702..20659800,20660518..20660661,20660837..20661162, 20661319..20661352,20661529..20661598,20661779..20661906, 20663266..20663505,20663605..20663782,20664402..20664592, 20664826..20664962,20665107..20665268,20665338..20665496, 20666782..20666833,20667201..20667458)) /locus_tag="TCM_029104" /product="CTC-interacting domain 3, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016786001" /inference="similar to AA sequence:ricco:29706.m001306" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04373t00001" mRNA complement(join(20658705..20659197,20659566..20659616, 20659702..20659800,20660518..20660661,20660837..20661162, 20661319..20661352,20661529..20661598,20661779..20661906, 20663266..20663505,20663605..20663782,20664402..20664592, 20664826..20664962,20665107..20665268,20665338..20665476, 20666782..20666833,20667201..20667484)) /locus_tag="TCM_029104" /product="CTC-interacting domain 3, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016786001" /inference="similar to AA sequence:ricco:29706.m001306" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5235t1; alternateUTRof:Thecc1EG029104t1; inference alignment:Newbler:10:TSA:cgbaB_g04373t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc813t10_C1" mRNA complement(join(20658705..20659197,20659566..20659619, 20659702..20659800,20660518..20660663,20660837..20661162, 20661319..20661352,20661529..20661598,20661779..20661906, 20663266..20663505,20663605..20663782,20664402..20664592, 20664826..20664962,20665107..20665268,20665338..20665476, 20666782..20666833,20667201..20667484)) /locus_tag="TCM_029104" /product="CTC-interacting domain 3, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016786001" /inference="similar to AA sequence:ricco:29706.m001306" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5235t6; inference alignment:Newbler:10:TSA:cgbaB_g04373t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc813t10_C1" mRNA complement(join(20658705..20659197,20659347..20659616, 20659702..20659800,20660518..20660661,20660837..20661162, 20661319..20661352,20661529..20661598,20661779..20661906, 20663266..20663505,20663605..20663782,20664402..20664592, 20664826..20664962,20665107..20665268,20665338..20665496, 20666782..20666833,20667201..20667484)) /locus_tag="TCM_029104" /product="CTC-interacting domain 3, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016786001" /inference="similar to AA sequence:ricco:29706.m001306" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5235t3; inference alignment:Newbler:10:TSA:cgbaB_g04373t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc813t10_C1" CDS complement(join(20659168..20659197,20659566..20659616, 20659702..20659800,20660518..20660661,20660837..20661162, 20661319..20661352,20661529..20661598,20661779..20661906, 20663266..20663505,20663605..20663782,20664402..20664592, 20664826..20664962,20665107..20665268,20665338..20665476)) /locus_tag="TCM_029104" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29706.m001306" /codon_start=1 /product="CTC-interacting domain 3, putative isoform 1" /protein_id="EOY27196.1" /db_xref="TAIR:AT3G14010.4" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TZU9" /translation="MNMQQVVLPKSSANGFGRRRVDREVGARLENKGQSGKSNQGRMQ TTGALAGGKTGGYESSCRDRLVYLTTCLIGHPVEVHVKSGSIYTGIFHATDAEKDFGI ILKMARLVKDGTLRGQKAIAEFVSKAPSKILIIPAKELVQVIAKDVAVTRDGFASELQ PEKHLEILIDSAISQSRHVEVERELERWVPDEDDPQCPELENIFDGPWNRNWNQFETN QKLFGVKSTFNEELYTTKLERGPQMRELEKEAMRIAREIEGEETQDLHLAEERGFHLH DNFDIDEEMRFSSVYRGRGVDDSGYEEDEDIMLDSHNSETFGDSSGSVSKRPADLTSL QSTDGARVSSSPFLMDEAPSSQAAIGTDLNHSGFNDQARQLASELPSKSFSVSGSESR IQDNLLGELGGSSNAKEFAEKQSPSEDLQLSNSIDSQSLLNDKIDESDKGGTSANPTT HAPSNSLSKFSEKPSSSGELSEGPASSKIAGEIQSVNSRGRPSSSTSSNSDYVGAVSA SSGPGLSPSSSMGSLASEKSTLNPHAKEFKLNPNAKSFTPSQSPVRPPSPVSDGSFYY PTQMSPVPHMHMPVSFGIGPSFPGHQHVIFNPQVAPIQSPQAYFHPNGPQYGQQMLLG QRQLVYYQPEMQFKGREY" CDS complement(join(20659168..20659197,20659566..20659616, 20659702..20659800,20660518..20660661,20660837..20661162, 20661319..20661352,20661529..20661598,20661779..20661906, 20663266..20663505,20663605..20663782,20664402..20664592, 20664826..20664962,20665107..20665268,20665338..20665476)) /locus_tag="TCM_029104" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29706.m001306" /codon_start=1 /product="CTC-interacting domain 3, putative isoform 1" /protein_id="EOY27199.1" /db_xref="TAIR:AT3G14010.4" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TZU9" /translation="MNMQQVVLPKSSANGFGRRRVDREVGARLENKGQSGKSNQGRMQ TTGALAGGKTGGYESSCRDRLVYLTTCLIGHPVEVHVKSGSIYTGIFHATDAEKDFGI ILKMARLVKDGTLRGQKAIAEFVSKAPSKILIIPAKELVQVIAKDVAVTRDGFASELQ PEKHLEILIDSAISQSRHVEVERELERWVPDEDDPQCPELENIFDGPWNRNWNQFETN QKLFGVKSTFNEELYTTKLERGPQMRELEKEAMRIAREIEGEETQDLHLAEERGFHLH DNFDIDEEMRFSSVYRGRGVDDSGYEEDEDIMLDSHNSETFGDSSGSVSKRPADLTSL QSTDGARVSSSPFLMDEAPSSQAAIGTDLNHSGFNDQARQLASELPSKSFSVSGSESR IQDNLLGELGGSSNAKEFAEKQSPSEDLQLSNSIDSQSLLNDKIDESDKGGTSANPTT HAPSNSLSKFSEKPSSSGELSEGPASSKIAGEIQSVNSRGRPSSSTSSNSDYVGAVSA SSGPGLSPSSSMGSLASEKSTLNPHAKEFKLNPNAKSFTPSQSPVRPPSPVSDGSFYY PTQMSPVPHMHMPVSFGIGPSFPGHQHVIFNPQVAPIQSPQAYFHPNGPQYGQQMLLG QRQLVYYQPEMQFKGREY" CDS complement(join(20659533..20659616,20659702..20659800, 20660518..20660661,20660837..20661162,20661319..20661352, 20661529..20661598,20661779..20661906,20663266..20663505, 20663605..20663782,20664402..20664592,20664826..20664962, 20665107..20665268,20665338..20665476)) /locus_tag="TCM_029104" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29706.m001306" /codon_start=1 /product="CTC-interacting domain 3, putative isoform 2" /protein_id="EOY27197.1" /db_xref="TAIR:AT3G14010.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TZU9" /translation="MNMQQVVLPKSSANGFGRRRVDREVGARLENKGQSGKSNQGRMQ TTGALAGGKTGGYESSCRDRLVYLTTCLIGHPVEVHVKSGSIYTGIFHATDAEKDFGI ILKMARLVKDGTLRGQKAIAEFVSKAPSKILIIPAKELVQVIAKDVAVTRDGFASELQ PEKHLEILIDSAISQSRHVEVERELERWVPDEDDPQCPELENIFDGPWNRNWNQFETN QKLFGVKSTFNEELYTTKLERGPQMRELEKEAMRIAREIEGEETQDLHLAEERGFHLH DNFDIDEEMRFSSVYRGRGVDDSGYEEDEDIMLDSHNSETFGDSSGSVSKRPADLTSL QSTDGARVSSSPFLMDEAPSSQAAIGTDLNHSGFNDQARQLASELPSKSFSVSGSESR IQDNLLGELGGSSNAKEFAEKQSPSEDLQLSNSIDSQSLLNDKIDESDKGGTSANPTT HAPSNSLSKFSEKPSSSGELSEGPASSKIAGEIQSVNSRGRPSSSTSSNSDYVGAVSA SSGPGLSPSSSMGSLASEKSTLNPHAKEFKLNPNAKSFTPSQSPVRPPSPVSDGSFYY PTQMSPVPHMHMPVSFGIGPSFPGHQHVIFNPQVAPIQSPQAYFHPNGPQYGQQMLLG QRQLVYYQPVSGSENLEFM" CDS complement(join(20659533..20659616,20659702..20659800, 20660518..20660661,20660837..20661162,20661319..20661352, 20661529..20661598,20661779..20661906,20663266..20663505, 20663605..20663782,20664402..20664592,20664826..20664962, 20665107..20665268,20665338..20665476)) /locus_tag="TCM_029104" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29706.m001306" /codon_start=1 /product="CTC-interacting domain 3, putative isoform 2" /protein_id="EOY27198.1" /db_xref="TAIR:AT3G14010.4" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TZU9" /translation="MNMQQVVLPKSSANGFGRRRVDREVGARLENKGQSGKSNQGRMQ TTGALAGGKTGGYESSCRDRLVYLTTCLIGHPVEVHVKSGSIYTGIFHATDAEKDFGI ILKMARLVKDGTLRGQKAIAEFVSKAPSKILIIPAKELVQVIAKDVAVTRDGFASELQ PEKHLEILIDSAISQSRHVEVERELERWVPDEDDPQCPELENIFDGPWNRNWNQFETN QKLFGVKSTFNEELYTTKLERGPQMRELEKEAMRIAREIEGEETQDLHLAEERGFHLH DNFDIDEEMRFSSVYRGRGVDDSGYEEDEDIMLDSHNSETFGDSSGSVSKRPADLTSL QSTDGARVSSSPFLMDEAPSSQAAIGTDLNHSGFNDQARQLASELPSKSFSVSGSESR IQDNLLGELGGSSNAKEFAEKQSPSEDLQLSNSIDSQSLLNDKIDESDKGGTSANPTT HAPSNSLSKFSEKPSSSGELSEGPASSKIAGEIQSVNSRGRPSSSTSSNSDYVGAVSA SSGPGLSPSSSMGSLASEKSTLNPHAKEFKLNPNAKSFTPSQSPVRPPSPVSDGSFYY PTQMSPVPHMHMPVSFGIGPSFPGHQHVIFNPQVAPIQSPQAYFHPNGPQYGQQMLLG QRQLVYYQPVSGSENLEFM" CDS complement(join(20660607..20660663,20660837..20661162, 20661319..20661352,20661529..20661598,20661779..20661906, 20663266..20663505,20663605..20663782,20664402..20664592, 20664826..20664962,20665107..20665268,20665338..20665476)) /locus_tag="TCM_029104" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29706.m001306" /codon_start=1 /product="CTC-interacting domain 3, putative isoform 5" /protein_id="EOY27200.1" /db_xref="TAIR:AT3G14010.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TZU9" /translation="MNMQQVVLPKSSANGFGRRRVDREVGARLENKGQSGKSNQGRMQ TTGALAGGKTGGYESSCRDRLVYLTTCLIGHPVEVHVKSGSIYTGIFHATDAEKDFGI ILKMARLVKDGTLRGQKAIAEFVSKAPSKILIIPAKELVQVIAKDVAVTRDGFASELQ PEKHLEILIDSAISQSRHVEVERELERWVPDEDDPQCPELENIFDGPWNRNWNQFETN QKLFGVKSTFNEELYTTKLERGPQMRELEKEAMRIAREIEGEETQDLHLAEERGFHLH DNFDIDEEMRFSSVYRGRGVDDSGYEEDEDIMLDSHNSETFGDSSGSVSKRPADLTSL QSTDGARVSSSPFLMDEAPSSQAAIGTDLNHSGFNDQARQLASELPSKSFSVSGSESR IQDNLLGELGGSSNAKEFAEKQSPSEDLQLSNSIDSQSLLNDKIDESDKGGTSANPTT HAPSNSLSKFSEKPSSSGELSEGPASSKIAGEIQSVNSRGRPSSSTSSNSDYVGAVSA SSGPGLSPSSSMGSLASEKSTLNPHAKRNSNSTLMQRVSHHLNRL" mobile_element 20667916..20669952 /note="source:scaffold_5_CACTA_0615 176 2270" /mobile_element_type="transposon:TIR/CACTA" gene complement(20670884..20677388) /locus_tag="TCM_029105" /note="dbxref CacaoGD:Thecc1EG029105" mRNA complement(join(20670884..20671243,20671659..20672145, 20672545..20672804,20673266..20673593,20674547..20674830, 20674952..20675174,20676389..20677388)) /locus_tag="TCM_029105" /product="Phospholipid:diacylglycerol acyltransferase isoform 1" /inference="alignment:exonerate- protein:2:ricco:29706.m001305" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037574t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06140.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4974t1" mRNA complement(join(20670886..20671243,20671659..20672145, 20672545..20672804,20673266..20673593,20674547..20674830, 20674952..20675718,20676389..20676418)) /locus_tag="TCM_029105" /product="Phospholipid:diacylglycerol acyltransferase isoform 2" /inference="alignment:exonerate- protein:2:ricco:29706.m001305" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037574t2" /inference="similar to AA sequence:ricco:29706.m001305" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc897t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4974t1" mobile_element 20671404..20671462 /note="source:CACAO_M_E43482_F345_scaffold_5 1162 1221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20671427..20671484) /note="source:CACAO_M_E14113_F106_scaffold_3 13783 13841" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(20671668..20672145,20672545..20672804, 20673266..20673593,20674547..20674830,20674952..20675174, 20676389..20676873)) /locus_tag="TCM_029105" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037574t1" /codon_start=1 /product="Phospholipid:diacylglycerol acyltransferase isoform 1" /protein_id="EOY27201.1" /db_xref="Phytozome:POPTR_0003s06140.1" /db_xref="TAIR:AT5G13640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNA9" /translation="MSAIRRRKPINESDKTSEASDSKPHKEKEEEQHGDDDGSDKDKK KIPSKIKKKHEEKQPKWSCLDSCCWFIGCICVTWWLLLFLYNAMPASFPQYVTEAITG PLPDPPGVKLKKEGLKAKHPVVFVPGIVTGGLELWEGRKCAEGLFRKRFWGGTFGEVY KRPLCWVEHMSLDNETGLDPCGIRVRPVSGLVAADYFAPGYFVWAVLIANLARIGYEE KTMYMAAYDWRLSFQNTEARDQTLSRIKSNIELIVATNGGKKAVVIPHSMGVLYFLHF MKWVEAPAPMGGGGGPDWCSKHIKAVVNIGGPFLGVPKAIAGLFSAEAKDIAVVRAIA PGFLDNDIFQLQTLQHVMRMSRSWDSTMSMIPRGGDTIWGGLDWSPEEGYSCAKKRER KNDTQIAEEAGVESAVSQTRSAKYGRIISFGKDVAEAPSSDVERIDFRDAVKGHSAAN TTCRDVWTEYHDMGFGGINAVAEYKTYTAESIVDLLHFVAPKMMARGTAHFSYGIADN LDDPKYKHYKYWSNPLETKLPNAPEMEIFSLYGVGLPTERAYIYKLSPAAECYIPFQI DTSADDEETCLKDGVYSVDGDETVPVLSAGFMCAKGWRGKTRFNPSGIRTYIREYSHS PPANLLEGRGTLSGAHVDIMGNFALIEDVIRVAAGASGEELGGDQVYSNIFNWSEKID LQL" CDS complement(join(20671668..20672145,20672545..20672804, 20673266..20673593,20674547..20674830,20674952..20675152)) /locus_tag="TCM_029105" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29706.m001305; paralog of Thecc1EG037574t2" /codon_start=1 /product="Phospholipid:diacylglycerol acyltransferase isoform 2" /protein_id="EOY27202.1" /db_xref="TAIR:AT5G13640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNA9" /translation="MSLDNETGLDPCGIRVRPVSGLVAADYFAPGYFVWAVLIANLAR IGYEEKTMYMAAYDWRLSFQNTEARDQTLSRIKSNIELIVATNGGKKAVVIPHSMGVL YFLHFMKWVEAPAPMGGGGGPDWCSKHIKAVVNIGGPFLGVPKAIAGLFSAEAKDIAV VRAIAPGFLDNDIFQLQTLQHVMRMSRSWDSTMSMIPRGGDTIWGGLDWSPEEGYSCA KKRERKNDTQIAEEAGVESAVSQTRSAKYGRIISFGKDVAEAPSSDVERIDFRDAVKG HSAANTTCRDVWTEYHDMGFGGINAVAEYKTYTAESIVDLLHFVAPKMMARGTAHFSY GIADNLDDPKYKHYKYWSNPLETKLPNAPEMEIFSLYGVGLPTERAYIYKLSPAAECY IPFQIDTSADDEETCLKDGVYSVDGDETVPVLSAGFMCAKGWRGKTRFNPSGIRTYIR EYSHSPPANLLEGRGTLSGAHVDIMGNFALIEDVIRVAAGASGEELGGDQVYSNIFNW SEKIDLQL" mRNA complement(join(<20672005..20672030,20672545..20672804, 20673266..20673593,20674547..20674830,20674952..20675174, 20676389..20677388)) /locus_tag="TCM_029105" /product="Phospholipid:diacylglycerol acyltransferase isoform 3" /inference="alignment:exonerate- protein:2:ricco:29706.m001305" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037574t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06140.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc854t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4974t1" CDS complement(join(<20672006..20672030,20672545..20672804, 20673266..20673593,20674547..20674830,20674952..20675174, 20676389..20676873)) /locus_tag="TCM_029105" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG037574t1" /codon_start=1 /product="Phospholipid:diacylglycerol acyltransferase isoform 3" /protein_id="EOY27203.1" /db_xref="Phytozome:POPTR_0003s06140.1" /db_xref="TAIR:AT5G13640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNA9" /translation="MSAIRRRKPINESDKTSEASDSKPHKEKEEEQHGDDDGSDKDKK KIPSKIKKKHEEKQPKWSCLDSCCWFIGCICVTWWLLLFLYNAMPASFPQYVTEAITG PLPDPPGVKLKKEGLKAKHPVVFVPGIVTGGLELWEGRKCAEGLFRKRFWGGTFGEVY KRPLCWVEHMSLDNETGLDPCGIRVRPVSGLVAADYFAPGYFVWAVLIANLARIGYEE KTMYMAAYDWRLSFQNTEARDQTLSRIKSNIELIVATNGGKKAVVIPHSMGVLYFLHF MKWVEAPAPMGGGGGPDWCSKHIKAVVNIGGPFLGVPKAIAGLFSAEAKDIAVVRAIA PGFLDNDIFQLQTLQHVMRMSRSWDSTMSMIPRGGDTIWGGLDWSPEEGYSCAKKRER KNDTQIAEEAGVESAVSQTRSAKYGRIISFGKDVAEAPSSDVERIDFRDAVKGHSAAN TTCRDVWTEYHDMGFGGINAVAEYKTYTAESIVDLLHFVAPKMMARGTAHFSYGIADN LDDPKYKHYKYWSNPLETKLIHLLMMK" gene 20677463..20689213 /locus_tag="TCM_029106" /note="dbxref CacaoGD:Thecc1EG029106" mRNA join(20677463..20677570,20683570..20683889, 20684365..20684741,20686700..20686835,20687317..20687708, 20688438..20689148) /locus_tag="TCM_029106" /product="DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29706.m001303" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037573t3" /inference="similar to AA sequence:ricco:29706.m001303" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06798t00001" CDS join(20683764..20683889,20684365..20684741, 20686700..20686835,20687317..20687708,20688438..20688516) /locus_tag="TCM_029106" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29706.m001303; paralog of Thecc1EG037573t3" /codon_start=1 /product="DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein isoform 1" /protein_id="EOY27204.1" /db_xref="TAIR:AT3G14000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5HZ09" /translation="MLTCIACSKQLNDNNGSIGGQQDEDTLETPRTRQALKALTSQIK DMALKASGAYKNCKPCSGSSNHNHNQNYADSDAASDSARFHCPYRRTGSSNSTPRIWG KEMESRLKGLSSGEGTPASVSGRTESVLFMEEDEPKEWVAQVEPGVLITFVSLPEGGN DLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNRQAVPLPTPPRSEDEGSRIE SAKDSPVTPPLNKERPRNFVRPAGRGYSSSDSLDHHPTHSRQCYDSAALASTPKLSSI SGAKTETSSVDGSVTTSSSREADCSGELSISNASDMETEWVEQDEPGVYITIRALPGG TRELRRVRFSRERFGEMHARMWWDENRARIQEQYL" mRNA join(20683832..20684018,20684365..20684741, 20686700..20686835,20687317..20687708,20688438..20689213) /locus_tag="TCM_029106" /product="DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29706.m001303" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037573t3" /inference="similar to AA sequence:ricco:29706.m001303" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc435t7; inference alignment:Newbler:10:TSA:cgbaP2_g06798t00001" CDS join(20684374..20684741,20686700..20686835, 20687317..20687708,20688438..20688516) /locus_tag="TCM_029106" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29706.m001303; paralog of Thecc1EG037573t3" /codon_start=1 /product="DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein isoform 2" /protein_id="EOY27205.1" /db_xref="TAIR:AT3G14000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5HZ09" /translation="MALKASGAYKNCKPCSGSSNHNHNQNYADSDAASDSARFHCPYR RTGSSNSTPRIWGKEMESRLKGLSSGEGTPASVSGRTESVLFMEEDEPKEWVAQVEPG VLITFVSLPEGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNRQAVPLP TPPRSEDEGSRIESAKDSPVTPPLNKERPRNFVRPAGRGYSSSDSLDHHPTHSRQCYD SAALASTPKLSSISGAKTETSSVDGSVTTSSSREADCSGELSISNASDMETEWVEQDE PGVYITIRALPGGTRELRRVRFSRERFGEMHARMWWDENRARIQEQYL" gene 20689543..20698107 /locus_tag="TCM_029107" /note="dbxref CacaoGD:Thecc1EG029107" mRNA join(20689543..20689828,20689942..20690591, 20691751..20691794,20692177..20692303,20692952..20693084, 20693244..20693839,20694484..20694823,20694945..20695215, 20695385..20695477,20695583..20696029,20696804..20698107) /locus_tag="TCM_029107" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29706.m001302" /inference="similar to AA sequence:Phytozome:POPTR_0003s06200.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:PASA:2:TSA:puevd3b028145t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5258t2" mRNA join(20689543..20689828,20689942..20690591, 20691751..20691794,20692177..20692303,20692952..20693084, 20693244..20693839,20694484..20694823,20694975..20695215, 20695385..20695477,20695583..20696029,20696804..20698107) /locus_tag="TCM_029107" /product="Uncharacterized protein isoform 6" /inference="alignment:exonerate- protein:2:ricco:29706.m001302" /inference="similar to AA sequence:ricco:29706.m001302" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b028145t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5258t2" mRNA join(20690148..20690591,20691751..20691794, 20692177..20692303,20692946..20693084,20693244..20693839, 20694484..20694823,20694945..20695215,20695382..20695477, 20695583..20696029,20696804..20697684) /locus_tag="TCM_029107" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29706.m001302" /inference="similar to AA sequence:Phytozome:POPTR_0003s06200.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc224t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5258t2" mRNA join(20690148..20690591,20691751..20691794, 20692177..20692303,20692946..20693084,20693244..20693839, 20694484..20694823,20694975..20695215,20695382..20695477, 20695583..20696029,20696804..20697684) /locus_tag="TCM_029107" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:29706.m001302" /inference="similar to AA sequence:ricco:29706.m001302" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc224t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5258t2" mRNA join(20690158..20690591,20691751..20691794, 20692177..20692303,20692952..20693084,20693244..20693839, 20694311..20694356,20694449..20694841,20694945..20695215, 20695382..20695477,20695583..20696029,20696804..20698080) /locus_tag="TCM_029107" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29706.m001302" /inference="similar to AA sequence:Phytozome:POPTR_0003s06200.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5258t2" CDS join(20690426..20690591,20691751..20691794, 20692177..20692303,20692946..20693084,20693244..20693839, 20694484..20694823,20694945..20695215,20695382..20695477, 20695583..20696029,20696804..20697136) /locus_tag="TCM_029107" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY27207.1" /db_xref="Phytozome:POPTR_0003s06200.1" /db_xref="TAIR:AT3G13990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKW0" /translation="MVNGARIEGDISAPVRKTIQSIKEIVGNHSDADIYVALKEANMD PNETTQKLLHQDTFHEVRRKRDRKKESIEYKVSLDSRKRSENVGQGMKFRPYPERGSR RGSYTRNTLPDAGVNREFRVVRDNRVNQNANKDMKTPFSQCSTSANEQVPVNVAEKGS TGTSSNQRPFSSRSLSQTSNGPSSSQTRHARDANSSGIDRKEISEEKRNFIPNAVLRS QAVKPNNSQAHAATQSSSSSVVGVYSSSTDPVHVPSPDSRSSGAVGAIKREVGVVGVR RQPSENAVKDSSGSSGSLSNSLVGRDNSSEAFRSFPSISRADQLSHTSATESIMPGIS GSRSFLSNQYGSRQNQQALGHQKANQHNKEWKPKLSQKSSVNNPGVIGTPKKSASPPA DDAKGLDSETAKLQDKFSQVNIYENENVIIAQHIRVPENDRCRLTFGSFGVEFDSLRN FVPGFQATGVAEDSNGESAASLSVSAPDTSSDDAAGGKPIEILDDQIGNSGSDSPLSG TASEHQLPDTKDTSSPQNLDSYADIGLVQDNSPSYAPSESQKQQDPPELPSFSQAYDP QTGYDLPYFRPPIDETARGQGLPSPQEALSAHTANVPASTIPMMQQQQPPVAQMYPQV HVSHFANIMPYRQFVSPIYLPQMAMPGYSSNPAYPHPSNGSSYVLMPGGSSHLNANGL KYGIQQFKPVPAGSPTGFGNFTSPSGYAINAPGVVGNPTGLEDSSRIKYKDGNIYVPN QQADTSDLWIQNPRELPGLQSAPYYNMPQTPHGYMPSHTGHASFNAAAAQSSHMQFPG LYHPPPQPAAMANPHLGPAMGANVGVGVAPAAPGAQVGAYQQPQLGHLNWTTNF" CDS join(20690426..20690591,20691751..20691794, 20692177..20692303,20692946..20693084,20693244..20693839, 20694484..20694823,20694975..20695215,20695382..20695477, 20695583..20696029,20696804..20697136) /locus_tag="TCM_029107" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29706.m001302" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY27210.1" /db_xref="TAIR:AT3G13990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKW0" /translation="MVNGARIEGDISAPVRKTIQSIKEIVGNHSDADIYVALKEANMD PNETTQKLLHQDTFHEVRRKRDRKKESIEYKVSLDSRKRSENVGQGMKFRPYPERGSR RGSYTRNTLPDAGVNREFRVVRDNRVNQNANKDMKTPFSQCSTSANEQVPVNVAEKGS TGTSSNQRPFSSRSLSQTSNGPSSSQTRHARDANSSGIDRKEISEEKRNFIPNAVLRS QAVKPNNSQAHAATQSSSSSVVGVYSSSTDPVHVPSPDSRSSGAVGAIKREVGVVGVR RQPSENAVKDSSGSSGSLSNSLVGRDNSSEAFRSFPSISRADQLSHTSATESIMPGIS GSRSFLSNQYGSRQNQQALGHQKANQHNKEWKPKLSQKSSVNNPGVIGTPKKSASPPA DDAKGLDSETAKLQDKFSQVNIYENENVIIAQHIRVPENDRCRLTFGSFGVEFDSLRN FVPGFQATGVAEDSNGESAASDDAAGGKPIEILDDQIGNSGSDSPLSGTASEHQLPDT KDTSSPQNLDSYADIGLVQDNSPSYAPSESQKQQDPPELPSFSQAYDPQTGYDLPYFR PPIDETARGQGLPSPQEALSAHTANVPASTIPMMQQQQPPVAQMYPQVHVSHFANIMP YRQFVSPIYLPQMAMPGYSSNPAYPHPSNGSSYVLMPGGSSHLNANGLKYGIQQFKPV PAGSPTGFGNFTSPSGYAINAPGVVGNPTGLEDSSRIKYKDGNIYVPNQQADTSDLWI QNPRELPGLQSAPYYNMPQTPHGYMPSHTGHASFNAAAAQSSHMQFPGLYHPPPQPAA MANPHLGPAMGANVGVGVAPAAPGAQVGAYQQPQLGHLNWTTNF" CDS join(20690426..20690591,20691751..20691794, 20692177..20692303,20692952..20693084,20693244..20693839, 20694311..20694356,20694449..20694841,20694945..20695215, 20695382..20695477,20695583..20696029,20696804..20697136) /locus_tag="TCM_029107" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27206.1" /db_xref="Phytozome:POPTR_0003s06200.1" /db_xref="TAIR:AT3G13990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKW0" /translation="MVNGARIEGDISAPVRKTIQSIKEIVGNHSDADIYVALKEANMD PNETTQKLLHQDTFHEVRRKRDRKKESIEYKVSLDSRKRSENVGQGMKFRPYPERGSR RGSYTRNTLPGVNREFRVVRDNRVNQNANKDMKTPFSQCSTSANEQVPVNVAEKGSTG TSSNQRPFSSRSLSQTSNGPSSSQTRHARDANSSGIDRKEISEEKRNFIPNAVLRSQA VKPNNSQAHAATQSSSSSVVGVYSSSTDPVHVPSPDSRSSGAVGAIKREVGVVGVRRQ PSENAVKDSSGSSGSLSNSLVGRDNSSEAFRSFPSISRADQLSHTSATESIMPGISGS RSFLSNQYGSRQNQQALGHQKEASYCSAFHPFIDQISLWESLSCIFDAANQHNKEWKP KLSQKSSVNNPGVIGTPKKSASPPADDAKGLDSETAKLQDKFSQVNIYENENVIIAQH IRVPENDRCRLTFGSFGVEFDSLRNFVPGFQATGVAEDSNGESAARLVFSPNLSVSAP DTSSDDAAGGKPIEILDDQIGNSGSDSPLSGTASEHQLPDTKDTSSPQNLDSYADIGL VQDNSPSYAPSESQKQQDPPELPSFSQAYDPQTGYDLPYFRPPIDETARGQGLPSPQE ALSAHTANVPASTIPMMQQQQPPVAQMYPQVHVSHFANIMPYRQFVSPIYLPQMAMPG YSSNPAYPHPSNGSSYVLMPGGSSHLNANGLKYGIQQFKPVPAGSPTGFGNFTSPSGY AINAPGVVGNPTGLEDSSRIKYKDGNIYVPNQQADTSDLWIQNPRELPGLQSAPYYNM PQTPHGYMPSHTGHASFNAAAAQSSHMQFPGLYHPPPQPAAMANPHLGPAMGANVGVG VAPAAPGAQVGAYQQPQLGHLNWTTNF" CDS join(20690426..20690591,20691751..20691794, 20692177..20692303,20692952..20693084,20693244..20693839, 20694484..20694823,20694945..20695215,20695385..20695477, 20695583..20696029,20696804..20697136) /locus_tag="TCM_029107" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY27209.1" /db_xref="Phytozome:POPTR_0003s06200.1" /db_xref="TAIR:AT3G13990.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKW0" /translation="MVNGARIEGDISAPVRKTIQSIKEIVGNHSDADIYVALKEANMD PNETTQKLLHQDTFHEVRRKRDRKKESIEYKVSLDSRKRSENVGQGMKFRPYPERGSR RGSYTRNTLPGVNREFRVVRDNRVNQNANKDMKTPFSQCSTSANEQVPVNVAEKGSTG TSSNQRPFSSRSLSQTSNGPSSSQTRHARDANSSGIDRKEISEEKRNFIPNAVLRSQA VKPNNSQAHAATQSSSSSVVGVYSSSTDPVHVPSPDSRSSGAVGAIKREVGVVGVRRQ PSENAVKDSSGSSGSLSNSLVGRDNSSEAFRSFPSISRADQLSHTSATESIMPGISGS RSFLSNQYGSRQNQQALGHQKANQHNKEWKPKLSQKSSVNNPGVIGTPKKSASPPADD AKGLDSETAKLQDKFSQVNIYENENVIIAQHIRVPENDRCRLTFGSFGVEFDSLRNFV PGFQATGVAEDSNGESAASLSVSAPDTSSDDAAGGKPIEILDDQIGNSGSDSPLSGTA SEHQLPDTKDTSSPQNLDSYADIGLVQDNSPSYAPSESQKQQDPPELPSFSAYDPQTG YDLPYFRPPIDETARGQGLPSPQEALSAHTANVPASTIPMMQQQQPPVAQMYPQVHVS HFANIMPYRQFVSPIYLPQMAMPGYSSNPAYPHPSNGSSYVLMPGGSSHLNANGLKYG IQQFKPVPAGSPTGFGNFTSPSGYAINAPGVVGNPTGLEDSSRIKYKDGNIYVPNQQA DTSDLWIQNPRELPGLQSAPYYNMPQTPHGYMPSHTGHASFNAAAAQSSHMQFPGLYH PPPQPAAMANPHLGPAMGANVGVGVAPAAPGAQVGAYQQPQLGHLNWTTNF" CDS join(20690426..20690591,20691751..20691794, 20692177..20692303,20692952..20693084,20693244..20693839, 20694484..20694823,20694975..20695215,20695385..20695477, 20695583..20696029,20696804..20697136) /locus_tag="TCM_029107" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29706.m001302" /codon_start=1 /product="Uncharacterized protein isoform 6" /protein_id="EOY27211.1" /db_xref="TAIR:AT3G13990.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKW0" /translation="MVNGARIEGDISAPVRKTIQSIKEIVGNHSDADIYVALKEANMD PNETTQKLLHQDTFHEVRRKRDRKKESIEYKVSLDSRKRSENVGQGMKFRPYPERGSR RGSYTRNTLPGVNREFRVVRDNRVNQNANKDMKTPFSQCSTSANEQVPVNVAEKGSTG TSSNQRPFSSRSLSQTSNGPSSSQTRHARDANSSGIDRKEISEEKRNFIPNAVLRSQA VKPNNSQAHAATQSSSSSVVGVYSSSTDPVHVPSPDSRSSGAVGAIKREVGVVGVRRQ PSENAVKDSSGSSGSLSNSLVGRDNSSEAFRSFPSISRADQLSHTSATESIMPGISGS RSFLSNQYGSRQNQQALGHQKANQHNKEWKPKLSQKSSVNNPGVIGTPKKSASPPADD AKGLDSETAKLQDKFSQVNIYENENVIIAQHIRVPENDRCRLTFGSFGVEFDSLRNFV PGFQATGVAEDSNGESAASDDAAGGKPIEILDDQIGNSGSDSPLSGTASEHQLPDTKD TSSPQNLDSYADIGLVQDNSPSYAPSESQKQQDPPELPSFSAYDPQTGYDLPYFRPPI DETARGQGLPSPQEALSAHTANVPASTIPMMQQQQPPVAQMYPQVHVSHFANIMPYRQ FVSPIYLPQMAMPGYSSNPAYPHPSNGSSYVLMPGGSSHLNANGLKYGIQQFKPVPAG SPTGFGNFTSPSGYAINAPGVVGNPTGLEDSSRIKYKDGNIYVPNQQADTSDLWIQNP RELPGLQSAPYYNMPQTPHGYMPSHTGHASFNAAAAQSSHMQFPGLYHPPPQPAAMAN PHLGPAMGANVGVGVAPAAPGAQVGAYQQPQLGHLNWTTNF" mRNA join(20690562..20690591,20691751..20691794, 20692177..20692303,20692946..20693084,20693244..20693839, 20694484..20694823,20694945..20695215,20695385..20695477, 20695583..20696029,20696804..20697684) /locus_tag="TCM_029107" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29706.m001302" /inference="similar to AA sequence:Phytozome:POPTR_0003s06200.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc228t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5258t2" CDS join(20692237..20692303,20692946..20693084, 20693244..20693839,20694484..20694823,20694945..20695215, 20695385..20695477,20695583..20696029,20696804..20697136) /locus_tag="TCM_029107" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY27208.1" /db_xref="Phytozome:POPTR_0003s06200.1" /db_xref="TAIR:AT3G13990.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKW0" /translation="MKFRPYPERGSRRGSYTRNTLPDAGVNREFRVVRDNRVNQNANK DMKTPFSQCSTSANEQVPVNVAEKGSTGTSSNQRPFSSRSLSQTSNGPSSSQTRHARD ANSSGIDRKEISEEKRNFIPNAVLRSQAVKPNNSQAHAATQSSSSSVVGVYSSSTDPV HVPSPDSRSSGAVGAIKREVGVVGVRRQPSENAVKDSSGSSGSLSNSLVGRDNSSEAF RSFPSISRADQLSHTSATESIMPGISGSRSFLSNQYGSRQNQQALGHQKANQHNKEWK PKLSQKSSVNNPGVIGTPKKSASPPADDAKGLDSETAKLQDKFSQVNIYENENVIIAQ HIRVPENDRCRLTFGSFGVEFDSLRNFVPGFQATGVAEDSNGESAASLSVSAPDTSSD DAAGGKPIEILDDQIGNSGSDSPLSGTASEHQLPDTKDTSSPQNLDSYADIGLVQDNS PSYAPSESQKQQDPPELPSFSAYDPQTGYDLPYFRPPIDETARGQGLPSPQEALSAHT ANVPASTIPMMQQQQPPVAQMYPQVHVSHFANIMPYRQFVSPIYLPQMAMPGYSSNPA YPHPSNGSSYVLMPGGSSHLNANGLKYGIQQFKPVPAGSPTGFGNFTSPSGYAINAPG VVGNPTGLEDSSRIKYKDGNIYVPNQQADTSDLWIQNPRELPGLQSAPYYNMPQTPHG YMPSHTGHASFNAAAAQSSHMQFPGLYHPPPQPAAMANPHLGPAMGANVGVGVAPAAP GAQVGAYQQPQLGHLNWTTNF" mobile_element 20700075..20700090 /note="source:scaffold_6_CACTA_0703 3456 3536" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20700093..20700148) /note="source:scaffold_10_CACTA_0130 1143 1198" /mobile_element_type="transposon:TIR/CACTA" gene 20701811..20708228 /locus_tag="TCM_029108" /note="dbxref CacaoGD:Thecc1EG029108" mRNA join(20701811..20702252,20706198..20708228) /locus_tag="TCM_029108" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037363t1" /inference="similar to AA sequence:ricco:29706.m001301" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4976t3" mobile_element complement(20702133..20702251) /note="source:CACAO_M_S_E14849_F156_scaffold_2 679 800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20703304..20703388 /note="source:INTACT1373F_F385_scaffold_8-int 6940 7001" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 20706459..20707736 /locus_tag="TCM_029108" /note="dbxref ricco:29706.m001301; paralog of Thecc1EG037363t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27212.1" /db_xref="TAIR:AT3G13980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWB8" /translation="MDMWVKLPREDRCRNRRENPSFSSTLLDAIYRSIDESNGSKGEE ELIFYRETTMRKKHSNNCSLKEEEMTSLQRACMIEKWMEKKASCDNKVAIRRKSMADS ERNSRNDFDPVLLNSSSSSSDSSCGGGFSSSESDSFYNAKSRSSSSSSSHYTTHRPKP IRTSVSARPERYERPQHEVENSFHAAAQKPKHEGGFVRTKSKALKIYSDLKKVKQPIS PGGRLASFLNSLFTAGNAKKAKISSSGYEERKLKSEQTSSTCSSASSFSRSCLSKTPS SRGKLSSNGTKRSVRFCPVSVILDEDSRPCGHKSIHYENDQTSMIRKPSNKELEFRNL EENRRVVEAAKDLLKSYQKKKEEYDMRDVRNGNGDSSEDDDEEDAASYASSDLFELDN LSAIGIERYREELPVYETTHLDTNRAIANGLIV" mobile_element complement(20708692..20708733) /note="source:CACAO_M_S_E6117_F51_scaffold_2 1157 1198" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20709635..20709723 /note="source:INTACT433_F212_scaffold_1-int 3052 3142" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20718222..20723783) /note="source:INTACT1604F_F75_scaffold_10-int 1 5569" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(20724671..20727863) /locus_tag="TCM_029109" /note="dbxref CacaoGD:Thecc1EG029109" mRNA complement(join(20724671..20725166,20725794..20725874, 20726008..20726056,20726761..20727252,20727670..20727863)) /locus_tag="TCM_029109" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29706.m001299" /inference="similar to AA sequence:ricco:29706.m001299" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4953t1" CDS complement(join(20724866..20725166,20725794..20725874, 20726008..20726056,20726761..20727252,20727670..20727694)) /locus_tag="TCM_029109" /note="dbxref ricco:29706.m001299" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27213.1" /translation="METNHIHKGFYSLLTLFQYQAMPLIYVALVLILGTIAIAIIVFT FVMIGSCANPPWSSVPRSTNPVGERSSSALLNLSPYLASSFKYRRGMEKAQAAGGTET ECVVCLLRFEDDDEVRQLHGCKHSFHAPCIDMWMYSHSNCPLCRTPVDRRAALDFVSD DNSSSIDVLTDINKVFFLCLLETSTRLRQIYVSVPTLLSVALLLQILHSFLNGRLSSL SFDTLDMSVLINEPDENEVRDADKDSKQCKKSPPGAHPQRLKAARKHSGHRAHPLKPI ISWTSARESDPQQWPHKSIHVPYKRERPKLGSSPVQQQL" gene 20729249..20730903 /locus_tag="TCM_029110" /note="dbxref CacaoGD:Thecc1EG029110" mRNA join(20729249..20729857,20729936..20730903) /locus_tag="TCM_029110" /product="F-box associated ubiquitination effector family protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb07g024915.1.2" /inference="similar to AA sequence:frave:gene12712" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(20729319..20729857,20729936..20730482) /locus_tag="TCM_029110" /note="dbxref frave:gene12712" /codon_start=1 /product="F-box associated ubiquitination effector family protein" /protein_id="EOY27214.1" /db_xref="TAIR:AT1G64295.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLJ8" /translation="MEIICRETKDMDSVEIIKSQHCPYLPQDPMFEILTRVSLETLER CRLVNKEWNHVTYEPSFMKLYCKRNGILSGFFIQCLGLKLYTAFASQGNPFQDRSLSL DMLPVLAIVRAVSNQGLVYCESLRSRFHYVCKPTTGEWVKIPNPKTRFTTYRNAMVVL HSRPLHYKVVRLSEPKDASRGCTIICEIFDSEKGAWKRLENIKSSGFVLLSEAPPVFA SGAFHWFTFSQQIFAFDINSEKWELIDLPENFTDETTFYLKKALVQYEGKLALLRYAM DVDKVEIWVMENYSRRTWKLAREIVNSAYEDTIVHLYRSDVAVVINYKDLVWYDLNNG TSTTTKGSHIFFSRNVYPFESDYEPMF" mobile_element 20730526..20731095 /note="source:CACAO_M_S_E84632_F28_scaffold_6 1 570" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20732169..20732215 /note="source:CACAO_M_S_E66514_F257_scaffold_5 5963 6009" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20732211..20732406) /note="source:INTACT746_F84_scaffold_2-int 5077 5271" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20733392..20733474 /note="source:INTACT383F_F354_scaffold_3-int 4359 4437" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 20733544..20733912 /note="source:CACAO_M_E27_F84_scaffold_1 56 485" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20733949..20734085) /note="source:INTACT566_F257_scaffold_7-int 548 685" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(20734548..20740857) /locus_tag="TCM_029111" /note="dbxref CacaoGD:Thecc1EG029111" mRNA complement(join(20734548..20734834,20738509..20739166, 20739337..20740857)) /locus_tag="TCM_029111" /product="Tetratricopeptide-like helical, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g38350.1" /inference="similar to AA sequence:Phytozome:Glyma02g38350.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g4961t1" mobile_element 20735758..20736994 /note="source:scaffold_5_CACTA_0614 1441 2652" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(20738523..20739166,20739337..20740357)) /locus_tag="TCM_029111" /codon_start=1 /product="Tetratricopeptide-like helical, putative" /protein_id="EOY27215.1" /db_xref="Phytozome:Glyma02g38350.1" /db_xref="TAIR:AT4G14820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q4A7" /translation="MSQHPFPTKGNTFSTISHYLQFSKTISQLKQTHSFFLKTLPKPL YQHFLTQFLTQLLRGPGDNLGYPRHVFDQIPNCKNEFLWTSLIRSHVFQGHFIQSILL YSRMQRKGISPSGFTFSSVLNACARVPAMFEGKQVHASVEKSGFLRNNVVQTALLDLY AKCGFLLDAQRLFNAMEEKDVVAWTAMICGYTKVGLMDEAWCLFDAMEERNVVSWTAM VAGYADYGDMGAAKEFYDRMVEKNSVAWLAMIAGYGKCGNVSEARRVFDETVKPDASC WAAMVACYAQNGYAKEAIEMYVLMRDQSVRITDVAIVGALSACTQFGDVKMAEALAKN IEEGCCDRTLFVSNALIHMHAKFGCMEQAWMEFSRMKERDVVSYSTMIAALSDHGQFQ EALVLFSKMQKEGIKPNQVTFIGVLNACSHGGLVEEGCKLFELMTQILKIVPLSEHLT CVVDLLGRAGHLEKAYNLIIEYGDASDAGIWGALLGACRVYGNAELGEIAASHLFEIE PENVGNYVLLANIYASLNKWEDAERLRKVISEKEKRKSPGCSWVSN" mobile_element complement(20740902..20740986) /note="source:INTACT850F_F2_scaffold_5-int 486 582" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20740932..20744354) /locus_tag="TCM_029112" /note="dbxref CacaoGD:Thecc1EG029112" mRNA complement(join(20740932..20741578,20741671..20741753, 20741840..20741920,20742006..20742021,20742392..20742470, 20742544..20742618,20743436..20743529,20743609..20743830, 20743946..20744062,20744201..20744354)) /locus_tag="TCM_029112" /product="Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400009196" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037360t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400009196" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10935t00001" CDS complement(join(20741512..20741578,20741671..20741753, 20741840..20741920,20742006..20742021,20742392..20742470, 20742544..20742618,20743436..20743529,20743609..20743830, 20743946..20744062,20744201..20744224)) /locus_tag="TCM_029112" /note="paralog of Thecc1EG037360t1" /codon_start=1 /product="Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein" /protein_id="EOY27216.1" /db_xref="Phytozome:PGSC0003DMP400009196" /db_xref="TAIR:AT5G12040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RUF8" /translation="MEVPTISKFKVGLCQLTVSSDKNQNLIRAHNLIKVAAQQGARLV VLPEMWNCPYSADDFAKYAEDFENGDSSPSFSVLSEVASCYGITIVGGSIPEWCNGRL YNTCCVFGPDGKLKAKHRKIHLFDIDVPGDISFKESDSFAAGDEPTIVDTDIGRIGIG ICHDMRFPELAMLYRAKGAHIICYPGAFNMSTGDLLWELVQRARAADNQLFVATCSPS RDSAGCYAIWGHSTLVSPFGEIIATSEHEETVVVAEIDYSEIQRTRESLPLEKQRRAD IYRFIEMDH" gene complement(20744606..20750088) /locus_tag="TCM_029113" /note="dbxref CacaoGD:Thecc1EG029113" mRNA complement(join(20744606..20745123,20745276..20745446, 20745569..20745682,20746017..20746187,20746291..20746410, 20746656..20746730,20747496..20747552,20747884..20748064, 20748424..20748500,20748958..20749025,20749198..20749292, 20749845..20749917)) /locus_tag="TCM_029113" /product="Developmentally regulated G-protein 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001252t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06220.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03003t00001" CDS complement(join(20745028..20745123,20745276..20745446, 20745569..20745682,20746017..20746187,20746291..20746410, 20746656..20746730,20747496..20747552,20747884..20748064, 20748424..20748500,20748958..20749025,20749198..20749267)) /locus_tag="TCM_029113" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG001252t1" /codon_start=1 /product="Developmentally regulated G-protein 1 isoform 1" /protein_id="EOY27217.1" /db_xref="Phytozome:POPTR_0003s06220.2" /db_xref="TAIR:AT1G17470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWB7" /translation="MGIIERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEP PKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPG IIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILT KELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL FREDATVDDLIDVIEGNRKYIKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNL DRLLSKMWEEMGLVRVYTKPQGQQPDFSDPVVLSADRGGCTVEDFCNHIHRNLLKDVK YVLVWGTSARHYPQHCGLSQSLQDEDVVQIVKKKEKEEGGRGRFKSHSTAPARISDRE KKAPLKT" mRNA complement(join(20745412..20745441,20745569..20745682, 20746017..20746187,20746291..20746410,20746656..20746730, 20747496..20747552,20747884..20748064,20748424..20748500, 20748958..20749025,20749198..20749292,20749410..20749542)) /locus_tag="TCM_029113" /product="Developmentally regulated G-protein 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001252t3" /inference="similar to AA sequence:Phytozome:POPTR_0001s17030.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc841t1; inference alignment:Newbler:10:TSA:cgbaP1_g03003t00001" mRNA complement(join(20745417..20746187,20746291..20746410, 20746656..20746730,20747496..20747552,20747884..20748064, 20748424..20748500,20748958..20749025,20749198..20749292, 20749410..20749542)) /locus_tag="TCM_029113" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001252t3" /inference="similar to AA sequence:Phytozome:POPTR_0001s17030.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc841t4; alternateUTRof:Thecc1EG029113t2; inference alignment:Newbler:10:TSA:cgbaP1_g03003t00001" mRNA complement(join(20745421..20745446,20745569..20746187, 20746291..20746410,20746656..20746730,20747496..20747552, 20747884..20748064,20748424..20748500,20748958..20749025, 20749198..20749292,20749845..20750088)) /locus_tag="TCM_029113" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001252t3" /inference="similar to AA sequence:Phytozome:POPTR_0001s17030.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc822t5; inference alignment:Newbler:10:TSA:cgbaP1_g03003t00001" mRNA complement(join(20745421..20745682,20746017..20746187, 20746291..20746410,20746656..20746730,20747496..20747552, 20747884..20748064,20748424..20748500,20748958..20749025, 20749198..20749292)) /locus_tag="TCM_029113" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001252t3" /inference="similar to AA sequence:Phytozome:POPTR_0001s17030.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc787t10; inference alignment:Newbler:10:TSA:cgbaP1_g03003t00001" CDS complement(join(20745424..20745441,20745569..20745682, 20746017..20746187,20746291..20746410,20746656..20746730, 20747496..20747552,20747884..20748064,20748424..20748500, 20748958..20749025,20749198..20749267)) /locus_tag="TCM_029113" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG001252t3" /codon_start=1 /product="Developmentally regulated G-protein 1 isoform 3" /protein_id="EOY27219.1" /db_xref="Phytozome:POPTR_0001s17030.1" /db_xref="TAIR:AT1G17470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWB7" /translation="MGIIERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEP PKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPG IIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILT KELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL FREDATVDDLIDVIEGNRKYIKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNL DRLLSKMWEEMGLVRVYTKPQGQQPDFSDPVVLSARWLYS" CDS complement(join(20745452..20745682,20746017..20746187, 20746291..20746410,20746656..20746730,20747496..20747552, 20747884..20748064,20748424..20748500,20748958..20749025, 20749198..20749267)) /locus_tag="TCM_029113" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG001252t3" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 4" /protein_id="EOY27220.1" /db_xref="Phytozome:POPTR_0001s17030.1" /db_xref="TAIR:AT1G17470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWB7" /translation="MGIIERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEP PKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPG IIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILT KELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL FREDATVDDLIDVIEGNRKYIKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNL DRLLSKMWEEMGLVRVYTKPQGQQPDFSDPVVLSAVCHISSYHCIYSIWYMLLHLGRK FSYCLFLSLNPFFFV" CDS complement(join(20745849..20746187,20746291..20746410, 20746656..20746730,20747496..20747552,20747884..20748064, 20748424..20748500,20748958..20749025,20749198..20749267)) /locus_tag="TCM_029113" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG001252t3" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY27218.1" /db_xref="Phytozome:POPTR_0001s17030.1" /db_xref="TAIR:AT1G72660.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWB7" /translation="MGIIERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEP PKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPG IIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILT KELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL FREDATVDDLIDVIEGNRKYIKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKACS SILGLNVNGSWEYTVGLKMQLVSSTAMFRNCWRVISFISFWLVISNHVFYEI" CDS complement(join(20745849..20746187,20746291..20746410, 20746656..20746730,20747496..20747552,20747884..20748064, 20748424..20748500,20748958..20749025,20749198..20749267)) /locus_tag="TCM_029113" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG001252t3" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY27221.1" /db_xref="Phytozome:POPTR_0001s17030.1" /db_xref="TAIR:AT1G72660.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWB7" /translation="MGIIERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEP PKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPG IIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILT KELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL FREDATVDDLIDVIEGNRKYIKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKACS SILGLNVNGSWEYTVGLKMQLVSSTAMFRNCWRVISFISFWLVISNHVFYEI" gene complement(20750202..20759540) /locus_tag="TCM_029115" /note="dbxref CacaoGD:Thecc1EG029115" mRNA complement(join(20750202..20750738,20750935..20750991, 20751127..20751402,20752182..20752319,20752546..20753529, 20754353..20754411,20755046..20755217,20756173..20756335, 20756931..20757196,20758314..20758846,20759447..20759540)) /locus_tag="TCM_029115" /product="TRF-like 3, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06240.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016777001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03031t00002" mRNA complement(join(20750253..20750738,20750935..20750991, 20751127..20751402,20752182..20752319,20752546..20753361, 20754353..20754411,20755046..20755217,20756173..20756335, 20756931..20757350)) /locus_tag="TCM_029115" /product="TRF-like 3, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06240.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016777001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5167t3; inference alignment:Newbler:10:TSA:cgbaL_g03031t00002; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc486t14" CDS complement(join(20750574..20750738,20750935..20750991, 20751127..20751402,20752182..20752319,20752546..20753361, 20754353..20754411,20755046..20755217,20756173..20756301)) /locus_tag="TCM_029115" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="TRF-like 3, putative isoform 2" /protein_id="EOY27223.1" /db_xref="Phytozome:GSVIVT01016777001" /db_xref="TAIR:AT1G72650.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKV6" /translation="METVVLVEGSNEGKFEETGLEKNNSALSSPKHVADPVVYKLVRV EGDGRLVPATDDELMEVEGLLENEKREIHIVADTGQALGCTSNEVSSSGIQLESSEGL SQSENTEADAEKLSARLEETVLSGTQCMSDNHVTQSGSVGERSKPLDELIEGGSSTSA GCISSKPDFSKLKGEICLDNLSIKELHEVFKATFGRDTTVKDKQWLKRRIAMGLTNSC DVSTTTFVIKDNKLVKKVKEDSCNNVDGATSEDHPVVGVENHEDLLNSLSSQIDEHQT TSGMRLGSNSHENTYSEDLAAEQRAAKRVRKPTRRYIEELSKEESKEYSGRLIPSAKN IGIRPMALKSHARPARNGSLDGRTIITRLDSLGGSGIQVPCVYRVRRSRPRKNVMALL KFHPSGMGMTTTFVKKGLDVHSSQMDNGSGNKVLEARSTPEQTLQQFVAEPKKEKPAA ELGQHMGLKHVNLSGDSSDDNVVTVPTAKGGTRRKHHRAWTLSEVMKLVDGVAKYGAG RWSEIKRLAFASYSYRTSVDLKDKWRNLLKASFAQTPVDKGVNSRKHPSMPIPAPILL RVRELAEIQSQVPPNLSASKLAACGGRSVNETRSGYL" CDS complement(join(20750574..20750738,20750935..20750991, 20751127..20751402,20752182..20752319,20752546..20753529, 20754353..20754411,20755046..20755217,20756173..20756301)) /locus_tag="TCM_029115" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="TRF-like 3, putative isoform 1" /protein_id="EOY27222.1" /db_xref="Phytozome:GSVIVT01016777001" /db_xref="TAIR:AT1G72650.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWB6" /translation="METVVLVEGSNEGKFEETGLEKNNSALSSPKHVADPVVYKLVRV EGDGRLVPATDDELMEVEGLLENEKREIHIVADTGQALGCTSNEVSSSGIQLESSEGL SQSENTEADAEKLSARLEYIEEMLHKVKHEERLRLSCRSPDHSSAYMNVDSHCSEQHD KLLGIDQKLQSQIPLQETVLSGTQCMSDNHVTQSGSVGERSKPLDELIEGGSSTSAGC ISSKPDFSKLKGEICLDNLSIKELHEVFKATFGRDTTVKDKQWLKRRIAMGLTNSCDV STTTFVIKDNKLVKKVKEDSCNNVDGATSEDHPVVGVENHEDLLNSLSSQIDEHQTTS GMRLGSNSHENTYSEDLAAEQRAAKRVRKPTRRYIEELSKEESKEYSGRLIPSAKNIG IRPMALKSHARPARNGSLDGRTIITRLDSLGGSGIQVPCVYRVRRSRPRKNVMALLKF HPSGMGMTTTFVKKGLDVHSSQMDNGSGNKVLEARSTPEQTLQQFVAEPKKEKPAAEL GQHMGLKHVNLSGDSSDDNVVTVPTAKGGTRRKHHRAWTLSEVMKLVDGVAKYGAGRW SEIKRLAFASYSYRTSVDLKDKWRNLLKASFAQTPVDKGVNSRKHPSMPIPAPILLRV RELAEIQSQVPPNLSASKLAACGGRSVNETRSGYL" gene 20759448..20763046 /locus_tag="TCM_029116" /note="dbxref CacaoGD:Thecc1EG029116" mRNA join(20759448..20759949,20760037..20760123, 20760205..20760260,20760353..20760448,20760575..20760652, 20761181..20761243,20761338..20761511,20762032..20762127, 20762679..20763046) /locus_tag="TCM_029116" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29706.m001294" /inference="similar to AA sequence:Phytozome:POPTR_0003s06260.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02726t00002" CDS join(20759769..20759949,20760037..20760123, 20760205..20760260,20760353..20760448,20760575..20760652, 20761181..20761243,20761338..20761511,20762032..20762127, 20762679..20762762) /locus_tag="TCM_029116" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY27224.1" /db_xref="Phytozome:POPTR_0003s06260.1" /db_xref="TAIR:AT1G72640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NMC1" /translation="MAGNLSYSTLLSQTYLLFPSHNPRRTLNSSFFVNIEKPALTHCS AKKKIGFVDQILDYIEGGPKLRKWYGAPELLPKDGSVVDEEEDYPEDEVRDAVLVTDG DSDIGQMVILSLIVKRTRVKAIVKDKRTASEAFGTYVQSISGDTSNKIFVKKALRGVR AIICPNEGFLSSVESLKGVEHIVLLSQLSIYRASSGIQALMTNNSRKLAKKDESVLMA SGIPYTIIRAGMLQNTPGATQGFNFEEGRAANGNLSMEDGASICVEALEVVPQTRFTF EVVNGGEKVSDWKECLTRLMEKAEQQLP" gene complement(20767197..20768967) /locus_tag="TCM_029117" /note="dbxref CacaoGD:Thecc1EG029117" mRNA complement(join(20767197..20767828,20768679..20768967)) /locus_tag="TCM_029117" /product="ELF4-like 4" /inference="alignment:exonerate-protein:2:frave:gene07412" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037563t2" /inference="similar to AA sequence:frave:gene07412" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12207t00001" CDS complement(20767445..20767789) /locus_tag="TCM_029117" /note="dbxref frave:gene07412; paralog of Thecc1EG037563t2" /codon_start=1 /product="ELF4-like 4" /protein_id="EOY27225.1" /db_xref="TAIR:AT1G17455.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q570U6" /translation="MEGDIFSGFGNGTQVDGKVLQTFQKSFVQVQGILDQNRLLINEI NQNHESKIPDNLSRNVGLIRELNNNIRRVVDLYADLSSSFTRSMEASSEGDSAGTFKS DGKASQKRIRSG" gene 20769817..20783657 /locus_tag="TCM_029118" /note="dbxref CacaoGD:Thecc1EG029118" mRNA join(20769817..20770435,20770974..20771373, 20771450..20771521,20771688..20771750,20772411..20772620, 20773423..20774022,20774139..20774894,20776036..20776317, 20776780..20776935,20777124..20777557,20777951..20778416, 20778640..20778966,20779607..20780372,20780495..20780554, 20780917..20781393,20782202..20782240,20782797..20783657) /locus_tag="TCM_029118" /product="B-block binding subunit of TFIIIC, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29706.m001292" /inference="similar to AA sequence:ricco:29706.m001292" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc445t8; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc445t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5046t1" mRNA join(20769817..20770435,20770974..20771373, 20771450..20771521,20771688..20771750,20772411..20772620, 20773423..20774022,20774139..20774894,20776036..20776317, 20776780..20776935,20777124..20777557,20777951..20778416, 20778640..20778966,20779607..20780372,20780495..20780553, 20780917..20781214,20781311..20781393,20782202..20782240, 20782797..20783657) /locus_tag="TCM_029118" /product="B-block binding subunit of TFIIIC, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29706.m001292" /inference="similar to AA sequence:ricco:29706.m001292" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc445t6; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc445t6" CDS join(20770095..20770435,20770974..20771373, 20771450..20771521,20771688..20771750,20772411..20772620, 20773423..20774022,20774139..20774894,20776036..20776317, 20776780..20776935,20777124..20777557,20777951..20778416, 20778640..20778966,20779607..20780372,20780495..20780553, 20780917..20781214,20781311..20781393,20782202..20782240, 20782797..20782982) /locus_tag="TCM_029118" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29706.m001292" /codon_start=1 /product="B-block binding subunit of TFIIIC, putative isoform 1" /protein_id="EOY27226.1" /db_xref="TAIR:AT1G17450.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXX9" /translation="MDSIITSALEEICFHGQGGISLSSLCSKLDIPPPLISPLWKNLL SIPTLRFKARNAEFFSPSDDSIQCAEDAEKFEIKILADEKLRNNFVGLYDENVQISSQ QRRTLERLAIARTNGVTQSQLAKEFGIEGKNFFYILKNLECRGLIVKQPAVVRKKEPC TEGESRNSSPVTTNLIYLYRYAKRLGSQQRFEINKEEQTVENLGYEDENVPDEDGFAL ENVKENVLVNDYLPAMKAVCDKLEEANGKVLVVSDIKRDLGYTRSSGHKAWRNIYRRL KDAGLVEDLQAVVNEKVELCLRLVKKFSEKNFEPKLLGFDDHLDKGQQLKFGRTLRNV DQIVELPIDNQIYDMVDAEGSEGLPAMTVCERLGIDKKRSYSRFFNMFSRFGMHLQAE SHKKTTAYRVWTSGNANPKSSNAFLIKPKNPHDENEISNFDVGNSEVPEGSNQNFIEY DPSTSGGNFSTPMKVNDMENHTETSCGSLGETNHIVVYSDNMQEFPSEQSNTAFDAEL DLVSAESEIHPTPSKSTCCALLKPPDSGSRQRYACQVLTADGARREQRILERLQDEKF ILRPELYRWLVELEKDKSTKMDRKTVDRMLKKLQQQGHCKCMHINVPVVTNCGRSRIT QVVLHPSVESLHQELLSEIHDRLRSFEMQIRGHGSSKWKNNDTVAVLDGVQRTQSHVI SDAKASKSEAMRANGFVMAKMVRSKLLHGFLWGFLHSSHGWNGALSLEKHLHDQKNLH GSCILFSLEAAIKAIPLELFLQIVGTTLKFDDMIEKCKKGFCLSDLPIHEYKLLMDTQ ATGRLSLLIDILRRLKLIRLVPGECSDNRVKVPHANLTHAMELKPYIEEPLSLVATST FRSFDLRPRIRHDFILLSKEAVDDYWKTLEYCYAAADPRAALHAFPGSAVHEVFLNRS WASVRVMTADQRAQLLKRILKDNINEKLSFKDCEKIAKDLNLTVEQVLRVYYDKHQKR LNRFQGLPNSIEEQHQLERNKQSSGRKRKRSSKMKLVESARVDARTIQMDEQKVAALP DSIDGFTMKENDSLASSVGPEVLQAHQEADHVEAVNKPGSLEEDDDCYSLISQYAFPK MKPTRKKRFSWTDEADRELVTQYARYRAALGAKFHRVDWTSIAGLPAPPRACARRMTS LKKSIKFRKALMKLCNMLSERYVIHLEKNQNRAFNNNDCGFLVRSSSVEFSSGIEHGE DAGFEEERWDDFDDRKIRRALEDVLRFKQIAKLEASKRVGSVSAEWSNMNMNSEDYNL QGPEMVSQTTLGEDMGTGAGQLKSSIQSSRHHRFHQKLVKLWNIGHGVGRQVHESLAV SNAVELFKLVFLSTSTAAPFPNLLAETLRRYSEHDLFAAFSYLRDRKIMIGGTCGQPF VLSQQFLHSISKSPFPRNTGKRAANFSAWLHQREKDLMQGGINLTEDLQCGDIFHLFS LVSSGELSVSPSLPDEGVGEAEDLRSLKCRAEDSELCDADKAKKLKSIAEGEFVSRRE KGFPGIMVSVYSSTVSTANALELFNDEETCTLAFGNDETTSQKVNISSTNSDYMKEML QLGSNVIIASKSSESPWEAMASYAEHLLSKPSDEGQSSHFYPEIIKAVCAEIQKAGDQ GLSIEDVYSIVNLPGEMTPEIIIDTLQAFGRALKVNGYETVRVVDALYHSKYFLASSP CFHQDHKPPSPLTSQGKDDSNLILQQENQSLDTANLSGSVSVGDVHKVTILNLPEEHA LSSKETPTSNVNESYMADGTINRMVYNGLIRRVLGIVMQNPGISEEDIICRMDVLNPQ SCRKLLELMIWDKHLMVKKMLQMTDSGPPALLATLLGNSCRKSKLVFRKHFFANPTST FLL" CDS join(20770095..20770435,20770974..20771373, 20771450..20771521,20771688..20771750,20772411..20772620, 20773423..20774022,20774139..20774894,20776036..20776317, 20776780..20776935,20777124..20777557,20777951..20778416, 20778640..20778966,20779607..20780372,20780495..20780554, 20780917..20780930) /locus_tag="TCM_029118" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29706.m001292" /codon_start=1 /product="B-block binding subunit of TFIIIC, putative isoform 2" /protein_id="EOY27227.1" /db_xref="TAIR:AT1G17450.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW26" /translation="MDSIITSALEEICFHGQGGISLSSLCSKLDIPPPLISPLWKNLL SIPTLRFKARNAEFFSPSDDSIQCAEDAEKFEIKILADEKLRNNFVGLYDENVQISSQ QRRTLERLAIARTNGVTQSQLAKEFGIEGKNFFYILKNLECRGLIVKQPAVVRKKEPC TEGESRNSSPVTTNLIYLYRYAKRLGSQQRFEINKEEQTVENLGYEDENVPDEDGFAL ENVKENVLVNDYLPAMKAVCDKLEEANGKVLVVSDIKRDLGYTRSSGHKAWRNIYRRL KDAGLVEDLQAVVNEKVELCLRLVKKFSEKNFEPKLLGFDDHLDKGQQLKFGRTLRNV DQIVELPIDNQIYDMVDAEGSEGLPAMTVCERLGIDKKRSYSRFFNMFSRFGMHLQAE SHKKTTAYRVWTSGNANPKSSNAFLIKPKNPHDENEISNFDVGNSEVPEGSNQNFIEY DPSTSGGNFSTPMKVNDMENHTETSCGSLGETNHIVVYSDNMQEFPSEQSNTAFDAEL DLVSAESEIHPTPSKSTCCALLKPPDSGSRQRYACQVLTADGARREQRILERLQDEKF ILRPELYRWLVELEKDKSTKMDRKTVDRMLKKLQQQGHCKCMHINVPVVTNCGRSRIT QVVLHPSVESLHQELLSEIHDRLRSFEMQIRGHGSSKWKNNDTVAVLDGVQRTQSHVI SDAKASKSEAMRANGFVMAKMVRSKLLHGFLWGFLHSSHGWNGALSLEKHLHDQKNLH GSCILFSLEAAIKAIPLELFLQIVGTTLKFDDMIEKCKKGFCLSDLPIHEYKLLMDTQ ATGRLSLLIDILRRLKLIRLVPGECSDNRVKVPHANLTHAMELKPYIEEPLSLVATST FRSFDLRPRIRHDFILLSKEAVDDYWKTLEYCYAAADPRAALHAFPGSAVHEVFLNRS WASVRVMTADQRAQLLKRILKDNINEKLSFKDCEKIAKDLNLTVEQVLRVYYDKHQKR LNRFQGLPNSIEEQHQLERNKQSSGRKRKRSSKMKLVESARVDARTIQMDEQKVAALP DSIDGFTMKENDSLASSVGPEVLQAHQEADHVEAVNKPGSLEEDDDCYSLISQYAFPK MKPTRKKRFSWTDEADRELVTQYARYRAALGAKFHRVDWTSIAGLPAPPRACARRMTS LKKSIKFRKALMKLCNMLSERYVIHLEKNQNRAFNNNDCGFLVRSSSVEFSSGIEHGE DAGFEEERWDDFDDRKIRRALEDVLRFKQIAKLEASKRVGSVSAEWSNMNMNSEDYNL QGPEMVSQTTLGEDMGTGAGQLKSSIQSSRHHRFHQKLVKLWNIGHGVGRQVHESLAV SNAVELFKLVFLSTSTAAPFPNLLAETLRRYSEHDLFAAFSYLRDRKIMIGGTCGQPF VLSQQFLHSISKSPFPRNTGKRAANFSAWLHQREKDLMQGGINLTEDLQCGDIFHLFS LVSSGELSVSPSLPDEGVGEAEDLRSLKCRAEDSELCDADKAKKLKSIAEGEFVSRRE KGFPGIMVSVYSSTVSTANALELFNDEETCTLAFGNDETTSQKVNISSTNSDYMKEML QLGSNVIIASKSSESPWEAMASYAEHLLSKPSDEGQSSHFYPEIIKAVCAEIQKAGDQ GLSIEDVYSIVNLPGEMTPEIIIDTLQAFGRALKGQWL" gene complement(20783908..20784500) /locus_tag="TCM_029119" /note="dbxref CacaoGD:Thecc1EG029119" mRNA complement(20783908..20784500) /locus_tag="TCM_029119" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage" CDS complement(20784078..20784287) /locus_tag="TCM_029119" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27228.1" /translation="MQSSFSFILYFMPAAFETRLQLLQLACRFCFLLDFERYELLLKN MEAGASILQHCLTFGEFSFIPLPTF" gene 20784560..20795603 /locus_tag="TCM_029120" /note="dbxref CacaoGD:Thecc1EG029120" mRNA join(20784560..20785638,20786611..20786817, 20788303..20788911,20789022..20789096,20789690..20789768, 20790255..20790316,20790667..20790702,20790805..20791053, 20791819..20792333,20795321..20795603) /locus_tag="TCM_029120" /product="Transcription initiation factor TFIID subunit A isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06290.1" /inference="similar to AA sequence:ricco:29706.m001291" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16209t1" mRNA join(20784685..20785638,20786611..20786817, 20788303..20788911,20789022..20789096,20789690..20789768, 20790255..20790316,20790667..20790702,20790805..20790980, 20791819..20792339) /locus_tag="TCM_029120" /product="Transcription initiation factor TFIID subunit A isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06290.1" /inference="similar to AA sequence:ricco:29706.m001291" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc456t7; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16209t1" mRNA join(20784771..20785638,20786611..20786817, 20788303..20788911,20789019..20789096,20789690..20789768, 20790255..20790316,20790667..20790702,20790805..20790980, 20791819..20792330) /locus_tag="TCM_029120" /product="Transcription initiation factor TFIID subunit A isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06290.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s17000.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5159t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16209t1" mRNA join(20784771..20785638,20786611..20786817, 20788303..20788911,20789022..20789098,20789690..20789768, 20790253..20790316,20790667..20790702,20790805..20791055, 20791819..20792330) /locus_tag="TCM_029120" /product="Transcription initiation factor TFIID subunit A isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06290.1" /inference="similar to AA sequence:ricco:29706.m001291" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5159t5; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16209t1" CDS join(20784877..20785638,20786611..20786817, 20788303..20788911,20789019..20789096,20789690..20789768, 20790255..20790316,20790667..20790702,20790805..20790980, 20791819..20791828) /locus_tag="TCM_029120" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Transcription initiation factor TFIID subunit A isoform 4" /protein_id="EOY27232.1" /db_xref="Phytozome:POPTR_0001s17000.1" /db_xref="TAIR:AT1G17440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKV4" /translation="MAETASSSASPNPMMMDPSSSTATPPSSSATTNINPTPTPPPPT ASATTTLTQTPSTTSSILPQSNNPSPQIPPPSPSIDPSLQNPQQNLQQQQHHHQHQQQ ISQISSPPLPPLSQQQQQQQQQLLQQQQTQQNVAALSNFQIQQTLQRSPSFSRLNPLQ QQQQQQSQQQQQQQQQSQYGTVLRQQAGLYGQMNFGGSASIQANQQQNQQIQQISNPN LPRSALIGQSGHLPMLSGAAAAAAAQLSLQPQLLASPRQKAGLVQGSQFHPGNPTGQS LQGMQAMGMMNLSSQLRANGNLYAQHRINQGQMRQQLSQQTQLTSPQVQSLPRTSSQA FINPQLSGLAQSGQPGMMQNSLLQQQWLKQMPSISGPGSPSFRLQRQSQVLLPQQLAS SSPQLHQNSMALNSQQLSQLVQQQSQMGHSQMQQPQQHQQQQQQQQQQQQQQQHQLQQ QPLQQLQPQQPPLHQPQQQQSPRMPGPAGQKSLSLTGSQPDATASGTTTPGGSSSQGT EATNQLLGKRKIQDLVSQQVDSQGKLEPEVEDLLLEIADDFIDSVTTFACSLAKHRKS STLESKDLLLHLEKNWRLTIPGFSSEERNQTRPLSSDLHKQRLDMIRALMESSQPETT ANNPKEMIRQGLGNPVGANHLMRPSPSSEQLVSQAAGSQMLQQITRLW" CDS join(20784877..20785638,20786611..20786817, 20788303..20788911,20789022..20789096,20789690..20789768, 20790255..20790316,20790667..20790702,20790805..20790980, 20791819..20791828) /locus_tag="TCM_029120" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29706.m001291" /codon_start=1 /product="Transcription initiation factor TFIID subunit A isoform 3" /protein_id="EOY27231.1" /db_xref="TAIR:AT1G17440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIS8" /translation="MAETASSSASPNPMMMDPSSSTATPPSSSATTNINPTPTPPPPT ASATTTLTQTPSTTSSILPQSNNPSPQIPPPSPSIDPSLQNPQQNLQQQQHHHQHQQQ ISQISSPPLPPLSQQQQQQQQQLLQQQQTQQNVAALSNFQIQQTLQRSPSFSRLNPLQ QQQQQQSQQQQQQQQQSQYGTVLRQQAGLYGQMNFGGSASIQANQQQNQQIQQISNPN LPRSALIGQSGHLPMLSGAAAAAAAQLSLQPQLLASPRQKAGLVQGSQFHPGNPTGQS LQGMQAMGMMNLSSQLRANGNLYAQHRINQGQMRQQLSQQTQLTSPQVQSLPRTSSQA FINPQLSGLAQSGQPGMMQNSLLQQQWLKQMPSISGPGSPSFRLQRQSQVLLPQQLAS SSPQLHQNSMALNSQQLSQLVQQQSQMGHSQMQQPQQHQQQQQQQQQQQQQQQHQLQQ QPLQQLQPQQPPLHQPQQQQSPRMPGPAGQKSLSLTGSQPDATASGTTTPGGSSSQGT EATNQLLGKRKIQDLVSQVDSQGKLEPEVEDLLLEIADDFIDSVTTFACSLAKHRKSS TLESKDLLLHLEKNWRLTIPGFSSEERNQTRPLSSDLHKQRLDMIRALMESSQPETTA NNPKEMIRQGLGNPVGANHLMRPSPSSEQLVSQAAGSQMLQQITRLW" CDS join(20784877..20785638,20786611..20786817, 20788303..20788911,20789022..20789096,20789690..20789768, 20790255..20790316,20790667..20790702,20790805..20790987) /locus_tag="TCM_029120" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29706.m001291" /codon_start=1 /product="Transcription initiation factor TFIID subunit A isoform 1" /protein_id="EOY27229.1" /db_xref="TAIR:AT1G17440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIS8" /translation="MAETASSSASPNPMMMDPSSSTATPPSSSATTNINPTPTPPPPT ASATTTLTQTPSTTSSILPQSNNPSPQIPPPSPSIDPSLQNPQQNLQQQQHHHQHQQQ ISQISSPPLPPLSQQQQQQQQQLLQQQQTQQNVAALSNFQIQQTLQRSPSFSRLNPLQ QQQQQQSQQQQQQQQQSQYGTVLRQQAGLYGQMNFGGSASIQANQQQNQQIQQISNPN LPRSALIGQSGHLPMLSGAAAAAAAQLSLQPQLLASPRQKAGLVQGSQFHPGNPTGQS LQGMQAMGMMNLSSQLRANGNLYAQHRINQGQMRQQLSQQTQLTSPQVQSLPRTSSQA FINPQLSGLAQSGQPGMMQNSLLQQQWLKQMPSISGPGSPSFRLQRQSQVLLPQQLAS SSPQLHQNSMALNSQQLSQLVQQQSQMGHSQMQQPQQHQQQQQQQQQQQQQQQHQLQQ QPLQQLQPQQPPLHQPQQQQSPRMPGPAGQKSLSLTGSQPDATASGTTTPGGSSSQGT EATNQLLGKRKIQDLVSQVDSQGKLEPEVEDLLLEIADDFIDSVTTFACSLAKHRKSS TLESKDLLLHLEKNWRLTIPGFSSEERNQTRPLSSDLHKQRLDMIRALMESSQPETTA NNPKEMIRQGLGNPVGANHLMRPSPSSEQLVSQAAGSQMLQQITRY" CDS join(20784877..20785638,20786611..20786817, 20788303..20788911,20789022..20789098,20789690..20789693) /locus_tag="TCM_029120" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29706.m001291" /codon_start=1 /product="Transcription initiation factor TFIID subunit A isoform 2" /protein_id="EOY27230.1" /db_xref="TAIR:AT1G17440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIS8" /translation="MAETASSSASPNPMMMDPSSSTATPPSSSATTNINPTPTPPPPT ASATTTLTQTPSTTSSILPQSNNPSPQIPPPSPSIDPSLQNPQQNLQQQQHHHQHQQQ ISQISSPPLPPLSQQQQQQQQQLLQQQQTQQNVAALSNFQIQQTLQRSPSFSRLNPLQ QQQQQQSQQQQQQQQQSQYGTVLRQQAGLYGQMNFGGSASIQANQQQNQQIQQISNPN LPRSALIGQSGHLPMLSGAAAAAAAQLSLQPQLLASPRQKAGLVQGSQFHPGNPTGQS LQGMQAMGMMNLSSQLRANGNLYAQHRINQGQMRQQLSQQTQLTSPQVQSLPRTSSQA FINPQLSGLAQSGQPGMMQNSLLQQQWLKQMPSISGPGSPSFRLQRQSQVLLPQQLAS SSPQLHQNSMALNSQQLSQLVQQQSQMGHSQMQQPQQHQQQQQQQQQQQQQQQHQLQQ QPLQQLQPQQPPLHQPQQQQSPRMPGPAGQKSLSLTGSQPDATASGTTTPGGSSSQGT EATNQLLGKRKIQDLVSQVDSQGKLEPEVEDLLLEIADDFIDSV" gene 20795922..20797886 /locus_tag="TCM_029121" /note="dbxref CacaoGD:Thecc1EG029121" mRNA join(20795922..20796206,20796310..20796439, 20796769..20797886) /locus_tag="TCM_029121" /product="Duplicated homeodomain-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016767001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037555t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016767001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09169t00001" CDS join(20796074..20796206,20796310..20796439, 20796769..20797402) /locus_tag="TCM_029121" /note="paralog of Thecc1EG037555t1" /codon_start=1 /product="Duplicated homeodomain-like superfamily protein, putative" /protein_id="EOY27233.1" /db_xref="Phytozome:GSVIVT01016767001" /db_xref="TAIR:AT5G35550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2LME9" /translation="MGRSPCCSKEGLNRGAWTAMEDRILKDYIKIHGEGQWRNLPKRA GLKRCGKSCRLRWLNYLRPDIKRGNITRDEEELIIRLHKLLGNRWSLIAGRLPGRTDN EIKNYWNTNIGKKLQDKQSRSLSNRKPSNRSQQKANPTIETSARLPSEAKLTSCVIRT KATRCTKVFINVPEPQLEDTYKPSVLRPFPLPEEPESSEFVPKEDNDPSNLMIDLEVD ENFLSEFLNSEFSQLQPSHFQNKGDSYSNSDTCDPGQYSSTNSDQSLFLSNDMMQDAD FTSMASLMESELDWLQDQADPN" gene 20798703..20800218 /locus_tag="TCM_029122" /note="dbxref CacaoGD:Thecc1EG029122" mRNA join(20798703..20799062,20799161..20799456, 20799737..20800218) /locus_tag="TCM_029122" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage" CDS join(20798860..20799062,20799161..20799456, 20799737..20799981) /locus_tag="TCM_029122" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27234.1" /translation="MGNRRLGWTMSPAVGSSGGFLCCWDDEFFKMEKEIVEKRFILLV GCIIGQKVNVGIGNVHVPNSDAERVRIEANERSMAEFTDFIEECGFVDSPMAGGKFTW TSNREVVSFSRLDRFLISIEILEACHSIQQLCLPRFISDLTTEEVIWDAKPFQDFLEL LNDQTLVDSWAEPTPSSLKMNVDIAASGCPNKVGIGGVLRDDKGTILLLFSPWVGVTD SNSAELLAIWKGFQMVAASRWANTHSIFF" mobile_element complement(20801112..20801292) /note="source:scaffold_1_CACTA_0016 1100 1285" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20801344..20801594) /note="source:scaffold_5_CACTA_0607 7067 7321" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20801449..20801916) /note="source:CACAO_on_S_E58_scaffold_2 4 469" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(20802750..20803172) /note="source:scaffold_4_CACTA_0502 2309 2728" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20803169..20803658 /note="source:INTACT44_F119_scaffold_6-int 1171 1645" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20803728..20804653 /note="source:INTACT44_F119_scaffold_6-int 2622 3500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20804629..20805153 /note="source:INTACT44_F119_scaffold_6-int 5629 6177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20805320..20805528 /note="source:INTACT44_F119_scaffold_6-int 6283 6486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20805634..20806318 /note="source:INTACT44_F119_scaffold_6-int 6632 7349" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20806319..20807450) /note="source:CACAO_Again_on_E108_scaffold_4 1 1122" /mobile_element_type="transposon:TIR/hAT" mobile_element 20807450..20809096 /note="source:INTACT44_F119_scaffold_6-int 7341 9012" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20811045..20813868 /locus_tag="TCM_029125" /note="dbxref CacaoGD:Thecc1EG029125" mRNA join(20811045..20811219,20811372..20811430, 20812221..20812289,20812378..20812440,20813241..20813288, 20813498..20813851) /locus_tag="TCM_029125" /product="Ubiquitin-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016766001" /inference="similar to AA sequence:Phytozome:GSVIVT01016766001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc585t1_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc643t2_C2; inference alignment:Newbler:10:TSA:cgbaB_g15870t00001" mRNA join(20811113..20811219,20811372..20811430, 20812221..20812289,20812378..20812440,20813241..20813340, 20813498..20813734) /locus_tag="TCM_029125" /product="Ubiquitin-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016766001" /inference="similar to AA sequence:Phytozome:GSVIVT01016766001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g15870t00001; inference alignment:Newbler:10:TSA:cgbaB_g15870t00001" mRNA join(<20811126..20811219,20811372..20811430, 20812221..20812289,20812378..20812440,20813241..20813340, 20813495..20813868) /locus_tag="TCM_029125" /product="Ubiquitin-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016766001" /inference="similar to AA sequence:Phytozome:GSVIVT01016766001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5002t2; inference alignment:Newbler:10:TSA:cgbaB_g15870t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc643t2_C2" CDS join(<20811126..20811219,20811372..20811430, 20812221..20812289,20812378..20812440,20813241..20813300) /locus_tag="TCM_029125" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ubiquitin-like superfamily protein isoform 2" /protein_id="EOY27236.1" /db_xref="Phytozome:GSVIVT01016766001" /db_xref="TAIR:AT1G54210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S924" /translation="AIFLHPCSEIHLTRVLAQATMAAESPTSVRKVVVHLRATGDAPI LKQAKFKIPGTDKFAKVIDFLRRQLHRDTLFVYVNSAFSPNPDELVIDLYNNFGFDGK LVVNYACSMAWG" CDS join(20811186..20811219,20811372..20811430, 20812221..20812289,20812378..20812440,20813241..20813288, 20813498..20813551) /locus_tag="TCM_029125" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ubiquitin-like superfamily protein isoform 3" /protein_id="EOY27237.1" /db_xref="Phytozome:GSVIVT01016766001" /db_xref="TAIR:AT1G54210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S924" /translation="MAAESPTSVRKVVVHLRATGDAPILKQAKFKIPGTDKFAKVIDF LRRQLHRDTLFVYVNSAFSPNPDELVIDLYNNFGFDGKLVVNYACSMILTSYFHTSKG ISLVVF" CDS join(20811186..20811219,20811372..20811430, 20812221..20812289,20812378..20812440,20813241..20813300) /locus_tag="TCM_029125" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ubiquitin-like superfamily protein isoform 1" /protein_id="EOY27235.1" /db_xref="Phytozome:GSVIVT01016766001" /db_xref="TAIR:AT1G54210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S924" /translation="MAAESPTSVRKVVVHLRATGDAPILKQAKFKIPGTDKFAKVIDF LRRQLHRDTLFVYVNSAFSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG" mRNA join(<20811192..20811219,20811372..20811430, 20812221..20812289,20812378..20812440,20813498..20813846) /locus_tag="TCM_029125" /product="Ubiquitin-like superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016766001" /inference="similar to AA sequence:Phytozome:GSVIVT01016766001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc643t2_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc643t2_C2; inference alignment:Newbler:10:TSA:cgbaB_g15870t00001" CDS join(<20811192..20811219,20811372..20811430, 20812221..20812289,20812378..20812440,20813498..20813551) /locus_tag="TCM_029125" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Ubiquitin-like superfamily protein isoform 4" /protein_id="EOY27238.1" /db_xref="Phytozome:GSVIVT01016766001" /db_xref="TAIR:AT1G54210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXX7" /translation="AESPTSVRKVVVHLRATGDAPILKQAKFKIPGTDKFAKVIDFLR RQLHRDTLFVYVNSAFSPNPDELVIDLYNILTSYFHTSKGISLVVF" gene complement(20814011..20816697) /locus_tag="TCM_029126" /note="dbxref CacaoGD:Thecc1EG029126" mRNA complement(join(20814011..20814302,20815656..20816027, 20816129..20816258,20816382..20816697)) /locus_tag="TCM_029126" /product="Myb domain protein 23" /inference="alignment:exonerate- protein:2:ricco:29706.m001288" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015933t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06320.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11472t00001" CDS complement(join(20815718..20816027,20816129..20816258, 20816382..20816541)) /locus_tag="TCM_029126" /note="paralog of Thecc1EG015933t1" /codon_start=1 /product="Myb domain protein 23" /protein_id="EOY27239.1" /db_xref="Phytozome:POPTR_0003s06320.1" /db_xref="TAIR:AT5G40330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD12" /translation="MAPLKDETIKMEENVSPKREVNKGAWTAEEDRKLAEVIAVHGAK RWKIIAIKAGLNRCGKSCRLRWMNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIA GRLPGRTDNEIKNYWNSHLSKKINQKEKQSGATTREGCKAQKRVVENAKEVIEENTSR GGEDSNISFDVDEFFDFSNEDPLNLEWMSRFLEVDEGFN" gene 20820182..20824219 /locus_tag="TCM_029127" /note="dbxref CacaoGD:Thecc1EG029127" mRNA join(20820182..20820891,20821138..20821774, 20821867..20821949,20822134..20822142,20822304..20822392, 20822523..20822596,20822698..20822748,20822971..20823047, 20823540..20824219) /locus_tag="TCM_029127" /product="AP2 domain-containing transcription factor" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034652t1" /inference="similar to AA sequence:ricco:29706.m001286" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16220t1" CDS join(20820732..20820891,20821138..20821774, 20821867..20821949,20822134..20822142,20822304..20822392, 20822523..20822596,20822698..20822748,20822971..20823047, 20823540..20824102) /locus_tag="TCM_029127" /note="dbxref ricco:29706.m001286; paralog of Thecc1EG034652t1" /codon_start=1 /product="AP2 domain-containing transcription factor" /protein_id="EOY27240.1" /db_xref="TAIR:AT1G72570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW20" /translation="MSNWLGFSLTPHLRIDESFGREDHGGFSSVMPLRSDGSLYVVDP FRRSSNGAEDWRYENIGGATESEDGPKLEDFLGCCYSNSPSEETKVYGQTQEDSNENI VSTRINVNVAPSYNTNGDMEGGETLTNPSSLIQTYQYNENRQTLMASDNLQQCDPNPN HNHNNGMNHVPFESATSVSGFKSWLRQTPFSDGKASSEASNHCNFQTLSLTMTPSSQN GTMAAIAPLEGVDNRKRPVGKSLAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAH LWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKEL EEMKNMTRQEFVAHLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGT FSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIGGDLAKRSPKDSGP IALEDYNSCSSSTSAHPLLAISNGEASHEVADMVWNANSDDNQQHQGSNTNNDASLAT SNGRNSSNPQSPKCSVGLASEFGIGGDYSQGYFSLEGPKFEDGSNGTENSNENRLGSL GVVHQVPMFALWNE" mobile_element complement(20822707..20823200) /note="source:scaffold_9_CACTA_0921 6102 6592" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20823077..20823256 /note="source:scaffold_5_CACTA_0582 1539 1718" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20823254..20823667) /note="source:scaffold_9_CACTA_0921 5691 6104" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20826459..20826670 /note="source:scaffold_4_CACTA_0483 5558 5757" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20826491..20826857 /note="source:CACAO_MITE_S239_scaffold_9 5 399" /mobile_element_type="transposon:TIR/MITE" gene complement(20826767..20828550) /locus_tag="TCM_029128" /note="dbxref CacaoGD:Thecc1EG029128" mRNA complement(join(20826767..20827665,20827883..20827964, 20828502..20828550)) /locus_tag="TCM_029128" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(join(20827446..20827665,20827883..20827964, 20828502..20828520)) /locus_tag="TCM_029128" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27241.1" /translation="MGHTLGGSLLDLGLGEELEMSEEWAEHPAFAANRERLPFEKEHG HVGERWSWSRSRSRSSPLGHSVVQLEQEACLAGSSVISRSTAVSYSVPHFVSTKTVLY PLRN" gene 20828435..20831139 /locus_tag="TCM_029129" /note="dbxref CacaoGD:Thecc1EG029129" mRNA join(20828435..20828965,20829576..20831139) /locus_tag="TCM_029129" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene07428" /note="quality class is weak-utrpoor, express is medium, homology is ortholog weak, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1625t1" CDS 20829578..20830144 /locus_tag="TCM_029129" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27242.1" /translation="MVIMEPPLSRLVLLSLCLLFTIFTDLVESQSFNRRPTPPPSRSP FSHPPPPTRTPPYSPLRPPAAPSRPGPPSRPAAPSRPAAPSRPAAPSRPAAPSRPGAP SRPAAPFSAQPRPINQKDKTNSHRAQPQPPPPPHSRDHKVNIGKKIGLLFTGIVIILQ VGVVGFLVFKRRQLLKVKGAYETCSSSS" mobile_element 20833166..20833882 /note="source:CACAO_on_E373_scaffold_1 2 728" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(20834478..20836472) /locus_tag="TCM_029130" /note="dbxref CacaoGD:Thecc1EG029130" mRNA complement(join(20834478..20834839,20834937..20835289, 20835399..20835933,20836187..20836472)) /locus_tag="TCM_029130" /product="Growth-regulating factor 5, putative" /inference="alignment:exonerate- protein:2:ricco:29706.m001283" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037550t3" /inference="similar to AA sequence:ricco:29706.m001283" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5017t1" CDS complement(join(20834832..20834839,20834937..20835289, 20835399..20835933,20836187..20836364)) /locus_tag="TCM_029130" /note="dbxref ricco:29706.m001283; paralog of Thecc1EG037550t3" /codon_start=1 /product="Growth-regulating factor 5, putative" /protein_id="EOY27243.1" /db_xref="TAIR:AT3G13960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKU6" /translation="MISARNRSPFTPTQWQELEHQALIFKYMVSGVPIPPELIYSVKR SLDSSLASRLFPHQPIGWGCFQVGFGRKADPEPGRCRRTDGKKWRCSKEAYPESKYCE RHMHRGRNRSRKPVEVNSTTAVCTTPPPTTSSILSPSFSTINRNLSISTSSNSSLSSS SSSFSFSPLSSSPIAPEIYAHHNPNQITHLNPFLYSHPSTSTRPPGSGLSFQNDTSPH HFLDSGAGIVSYSHANKDYRYVHGTREGMDERSFFPEASGSARVVSDSYQPLTVSSYK SYPQSEYQSFGDSGSKQRQQQQQEQHCFVLGTDIKSARPIKLEKDDETQKQVHQFFGD HWPPRNTDSWLDLASNSGVHSDS" mobile_element 20838679..20839428 /note="source:CACAO_Again_on_S_E193_scaffold_6 2 836" /mobile_element_type="transposon:TIR/hAT" mobile_element 20842213..20843004 /note="source:CACAO_M_S_E17777_F2_scaffold_3 11108 11913" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20842639..20844719 /locus_tag="TCM_029131" /note="dbxref CacaoGD:Thecc1EG029131" mRNA join(20842639..20842776,20843717..20843855, 20843996..20844719) /locus_tag="TCM_029131" /product="Germin-like protein 1" /inference="alignment:exonerate- protein:2:ricco:29706.m001282" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037546t1" /inference="similar to AA sequence:ricco:29706.m001282" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2711t1" CDS join(20843764..20843855,20843996..20844578) /locus_tag="TCM_029131" /note="dbxref ricco:29706.m001282; paralog of Thecc1EG037546t1" /codon_start=1 /product="Germin-like protein 1" /protein_id="EOY27244.1" /db_xref="TAIR:AT5G20630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P94072" /translation="MQRLVVLFVIRFVSFVNMGISLPNCTILVRFYCPGAGLCVANLK GAETPSGYACKKAAKVTADDYMFTGLGLEGNTTNIIKAAVSPAFVAQFPGLNGLGMSA ARLDLAVGGAIPMHTHPAATELLCVVHGHITAGFISPANSVYLKTLKRGDIMVFPPGL LHFQISSGKRPGLAIVSFNSPNPGLQILDFALFANDLPSGLVETTTFLDDAQVKKLKG VLGGTG" gene 20845615..20849373 /locus_tag="TCM_029132" /note="dbxref CacaoGD:Thecc1EG029132" mRNA join(20845615..20845992,20846232..20846290, 20846371..20846473,20847027..20849373) /locus_tag="TCM_029132" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016754001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032137t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016757001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1639t4" CDS join(20845938..20845992,20846232..20846290, 20846371..20846473,20847027..20849128) /locus_tag="TCM_029132" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG032137t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27245.1" /db_xref="Phytozome:GSVIVT01016757001" /db_xref="TAIR:AT5G45470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SU24" /translation="MQALSTLAFKIDKLSPYFAQTSDFHPNLDTSNHLYQDQSQAGSQ RVQAAFELSIRGISHIFGALSIGAMIVTIASALLFVEIKDAAFLKTLSEVMLSLWLKW ELRAMVVLSLTVQLILIRYGNRRKFSGKNLKLVSFLVWTMYLFADWLATVALSTLLRS RREQITSPLVIFWTPFLLLHLGGPDTITAYSLSDNELWPRHFFGLCFQVGVALYVYVK FWTLTVTVLTFMAIPIFIVGIIKYGERVRALFLASNMRFRKSVFSASAAKSFELEIDL LQSPSKRDMKLEEYLNHRQIKDKYRYLYRAFLLFQVFRPLFSDLKLRIYRDLSYIFKM ENKVSAEEAFKMVEIELGFLYDLLYTKIPIVISRSGVILRCVCLSLTVSTLISFLIIV GKHGYSKVDIGISYLLMVGAIFIEIYSAILHLSSDRGILWFTSQNNRFLKATGSKLVF FTKAKKGIQKMAQHSLLGYCLQPRKIKLAAVFNIFDPEDNLEKYFHTSWKDVNPDLKI IIYSHLKEKRDQYEGFGYYNLSDLLDNRGYDVLKKKGITNDFGWIVTDVEFTHSLLLW HIATDLVFYDDHQRHRVGSLGPYCQLSKLLSDYMMYLLFLCPAMLPEGIGNLRHHDTC IEAKRFFHKDVKIKDAIRGSYGIDIESRSFFIEMGSRRKSAFFEGCQIASQLQEWVSS FQWDHQEKWELIGEVWLDMLTYAASQCSWKEHARQLQQGEELLTHVALLMAHLGLTRK INLVDLPERLQKVDFQPSWYWDRLDRLAYYLA" mRNA join(20846265..20846290,20846377..20846473, 20847027..20849286) /locus_tag="TCM_029132" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016754001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032137t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016757001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1505t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1639t4; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1560t3" CDS join(20846461..20846473,20847027..20849128) /locus_tag="TCM_029132" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG032137t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY27246.1" /db_xref="Phytozome:GSVIVT01016757001" /db_xref="TAIR:AT5G45470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SU24" /translation="MIVTIASALLFVEIKDAAFLKTLSEVMLSLWLKWELRAMVVLSL TVQLILIRYGNRRKFSGKNLKLVSFLVWTMYLFADWLATVALSTLLRSRREQITSPLV IFWTPFLLLHLGGPDTITAYSLSDNELWPRHFFGLCFQVGVALYVYVKFWTLTVTVLT FMAIPIFIVGIIKYGERVRALFLASNMRFRKSVFSASAAKSFELEIDLLQSPSKRDMK LEEYLNHRQIKDKYRYLYRAFLLFQVFRPLFSDLKLRIYRDLSYIFKMENKVSAEEAF KMVEIELGFLYDLLYTKIPIVISRSGVILRCVCLSLTVSTLISFLIIVGKHGYSKVDI GISYLLMVGAIFIEIYSAILHLSSDRGILWFTSQNNRFLKATGSKLVFFTKAKKGIQK MAQHSLLGYCLQPRKIKLAAVFNIFDPEDNLEKYFHTSWKDVNPDLKIIIYSHLKEKR DQYEGFGYYNLSDLLDNRGYDVLKKKGITNDFGWIVTDVEFTHSLLLWHIATDLVFYD DHQRHRVGSLGPYCQLSKLLSDYMMYLLFLCPAMLPEGIGNLRHHDTCIEAKRFFHKD VKIKDAIRGSYGIDIESRSFFIEMGSRRKSAFFEGCQIASQLQEWVSSFQWDHQEKWE LIGEVWLDMLTYAASQCSWKEHARQLQQGEELLTHVALLMAHLGLTRKINLVDLPERL QKVDFQPSWYWDRLDRLAYYLA" mobile_element complement(20849798..20849913) /note="source:INTACT257_F186_scaffold_6-int 19262 19380" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20849923..20849998) /note="source:INTACT257_F186_scaffold_6-int 1988 2056" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20852007..20852857) /note="source:INTACT674_F296_scaffold_6-int 4599 5434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20853337..20854118 /note="source:CACAO_M_S_E99665_F2_scaffold_9 7 787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20854711..20854794) /note="source:INTACT383F_F354_scaffold_3-int 1013 1101" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 20854859..20855170 /note="source:MITE_CACTA_25 1 315" /mobile_element_type="transposon:TIR/MITE" mobile_element 20855163..20855346 /note="source:scaffold_1_CACTA_0008 7201 7379" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20855472..20855562) /note="source:scaffold_4_CACTA_0482 7634 7725" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20857401..20858439) /note="source:INTACT639F_F363_scaffold_5-int 7466 8562" /mobile_element_type="retrotransposon:LTR/Copia" gene 20860468..20861100 /locus_tag="TCM_029134" /note="dbxref CacaoGD:Thecc1EG029134" mRNA 20860468..20861100 /locus_tag="TCM_029134" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s01420.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029132t1" /inference="similar to AA sequence:ricco:29577.m000463" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5023t2" CDS 20860510..20861031 /locus_tag="TCM_029134" /note="dbxref ricco:29577.m000463; paralog of Thecc1EG029132t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27247.1" /translation="MMYLLFLCPAMLPEGIGNVRHHHTCIEAQNFCHKDTKIEDAVNG MFGIDVKSRSFFIEMGSRRKSVFFEGCDIASQLQVLVSQFRWDHQEKWELIGDVWLDM LIYAASQCSWKEHTRQLQQGEELLTHVALLMAHLGLTRKINLVDLPERLSQVAFKPSW DWDKLERLAYYLA" gene 20862180..20863075 /locus_tag="TCM_029135" /note="dbxref CacaoGD:Thecc1EG029135" mRNA join(20862180..20862554,20862676..20863075) /locus_tag="TCM_029135" /product="Germin-like protein 16" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g28020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004977t1" /inference="similar to AA sequence:Phytozome:POPTR_0014s10600.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc3539t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2942t1" CDS join(20862299..20862554,20862676..20862956) /locus_tag="TCM_029135" /note="paralog of Thecc1EG004977t1" /codon_start=1 /product="Germin-like protein 16" /protein_id="EOY27248.1" /db_xref="Phytozome:POPTR_0014s10600.1" /db_xref="TAIR:AT3G62020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C7S8D0" /translation="MAAAKVFSYLFILIALFGVVASEPDHLRDLCVANKAAGIKVNGF PCKDKANVTEADFFFTGLANPGAINNSIGSVVTGANVDKIPGFITTANKLISKSIKKG DIFVFAKGLVHFLKNNGAKPASVIAGFNSQLPGTQFIAATLFTSTPPVPDNALTKTFQ IGTKEVNKIKNKLAPKKS" gene 20865105..20867560 /locus_tag="TCM_029136" /note="dbxref CacaoGD:Thecc1EG029136" mRNA 20865105..20867560 /locus_tag="TCM_029136" /product="Nodulation-signaling pathway 1 protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16890.1" /inference="similar to AA sequence:ricco:29706.m001281" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5035t1" CDS 20865199..20866947 /locus_tag="TCM_029136" /note="dbxref ricco:29706.m001281" /codon_start=1 /product="Nodulation-signaling pathway 1 protein, putative" /protein_id="EOY27249.1" /db_xref="TAIR:AT3G13840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4VYC8" /translation="MIKQLYISQPFSLFTFFLCFKHSFQSTIMTLEEAEPNPTPDHIL DWLEDSVSFLPSFLDDPYSTGEINSYQWWDQDQGIGQDLINIGATAIDSPITAAAAVA NTTNGSLIQSGSSFPNPGLPPNSSKKRKPSDDQVPRAAQNRQQKKNQSSKINENEKGK AGLEEVVANKRSAGNKKNSNKSSGNNCNNGNNKEGRWAEQLLNPCATAITAGNLTRVQ HLLYVLNELASSTGDSNHRLADHGLRALTHHLSSSSASAGPVTFASTEPKFFQRSLLK FYEVSPWFAFPNNVANASILQILAQEPDKTRNLHILDIGVSHGVQWPTLLEALTRRSG GPPPLVRITVVAATAEKSQIMDTPFSIGPPDHDFYSRLPGFAKSMNISLQINRLENHP LQNLNTKIIDNSPGETLIVCAQFRLHHLNHNTPDQRTEFLKVLRSLEPKGVILSENNM DCSCSNCGDFTTGFSRRVEYLWKFLDSTSSAFKGRESEERRVMEGEAAKALTNQGEMN EGKEKWCERMRGVGFVGEVFGEDAIDGARALLRKYDSNWEMRVEEKNGCVGLWWRGQP VSFCSLWKLDIKVEES" gene complement(20868219..20870877) /locus_tag="TCM_029137" /note="dbxref CacaoGD:Thecc1EG029137" mRNA complement(join(20868219..20868782,20868986..20869105, 20869561..20869682,20869822..20869992,20870188..20870289, 20870395..20870877)) /locus_tag="TCM_029137" /product="E3 Ubiquitin ligase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016752001" /inference="similar to AA sequence:Phytozome:GSVIVT01016752001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16213t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16213t1" mRNA complement(join(20868364..20868782,20868986..20869105, 20869561..20869682,20870395..20870859)) /locus_tag="TCM_029137" /product="E3 Ubiquitin ligase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016752001" /inference="similar to AA sequence:Phytozome:POPTR_0003s06390.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc565t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16213t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc615t16" CDS complement(join(20868494..20868782,20868986..20869105, 20869561..20869682,20870395..20870751)) /locus_tag="TCM_029137" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="E3 Ubiquitin ligase family protein isoform 2" /protein_id="EOY27251.1" /db_xref="Phytozome:POPTR_0003s06390.1" /db_xref="TAIR:AT1G54150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW13" /translation="MSSHEQALASLISQLALSFDGAVLGVALAYAAVRTIFRFKSTST ALRKIRVAPSLGVADLRSLLEEDQSDSTEEPIVVIRGAVEARSAGDGRSWKSLRSNVL VSQESGDKAVIIQRTQTVGLLDEEKILPLGKEITAVGICSFNNGVPEIKSCKELPYFL SDKTKDQMLLDLAFKTKILLWSGMVLGSLSIGILGYAFVRNWNKWKEWRLRRFQQSAH AAPDDATSQIAGDEEAGDVPDGELCVICLMRRRRSAFIPCGHLVCCQHCAVSVEREVV PKCPVCRMAIRSSVRIYSS" CDS complement(join(20868494..20868782,20868986..20869105, 20869561..20869682,20869822..20869992,20870188..20870289, 20870395..20870751)) /locus_tag="TCM_029137" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="E3 Ubiquitin ligase family protein isoform 1" /protein_id="EOY27250.1" /db_xref="Phytozome:GSVIVT01016752001" /db_xref="TAIR:AT1G54150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW13" /translation="MSSHEQALASLISQLALSFDGAVLGVALAYAAVRTIFRFKSTST ALRKIRVAPSLGVADLRSLLEEDQSDSTEEPIVVIRGAVEARSAGDGRSWKSLRSNVL VSQESGDKAVIIQRTQTYIYHEWRGFFGWTSDLRAIIGRSWNKKESTSMRKVPFILVE GGQWPQSDCVIVNMDGSRHPLPLTTVYHQLQPINASPYTFLQALFGHEYPVGLLDEEK ILPLGKEITAVGICSFNNGVPEIKSCKELPYFLSDKTKDQMLLDLAFKTKILLWSGMV LGSLSIGILGYAFVRNWNKWKEWRLRRFQQSAHAAPDDATSQIAGDEEAGDVPDGELC VICLMRRRRSAFIPCGHLVCCQHCAVSVEREVVPKCPVCRMAIRSSVRIYSS" mobile_element 20869137..20869153 /note="source:INTACT433_F212_scaffold_1-int 97 140" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20869154..20869198) /note="source:CACAO_M_E51939_F73_scaffold_7 2509 2553" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20872905..20873019 /note="source:CACAO_Mutator_E592_scaffold_3 3627 3732" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(20873410..20874116) /note="source:CACAO_on_E445_scaffold_2 3 696" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(20874232..20876064) /locus_tag="TCM_029138" /note="dbxref CacaoGD:Thecc1EG029138" mRNA complement(join(20874232..20874786,20874887..20874954, 20875045..20875137,20875254..20876064)) /locus_tag="TCM_029138" /product="Alpha/beta-Hydrolases superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16870.1" /inference="similar to AA sequence:frave:gene05291" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5038t1" CDS complement(join(20874669..20874786,20874887..20874954, 20875045..20875137,20875254..20875967)) /locus_tag="TCM_029138" /note="dbxref frave:gene05291" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein, putative" /protein_id="EOY27252.1" /db_xref="TAIR:AT1G72620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKU1" /translation="MASTKLWHVISFYISTALAIFRNLLLCTLNLNQSPFLTKFMDTI LSLYFRFCDLSPCAIDLDDQTTVHFWVANHRRFNKPSLVMVHGYGGNSLWQFLHQIGP LSRKFNAYVPDLLFFGKSHSKSLDRSDLFQAKCLADALKRLGVDRFSVYAISYGGFVA YRIAEMYPDAVEKVVIMSSGILYTDDQRAEQLRRIGRHPSEILVPKNPDDLRLLVNLS MYKQNSLHWLPDFLLREFVTMMYDHCRKEKIELAEHLVEKKADTNLPVLTQETLIIWG DQDKVFPLELAHQLQRHLGSKSRLEIIKDTGHAANMESPDEVNKLVISFVSGCS" mobile_element complement(20877707..20877754) /note="source:INTACT495_F229_scaffold_2-int 2855 2900" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20877712..20877755) /note="source:scaffold_8_CACTA_0860 10418 10463" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20877723..20877801) /note="source:INTACT82F_F344_scaffold_2-int 8824 8899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20877756..20877794 /note="source:CACAO_M_S_E98417_F15_scaffold_8 1211 1256" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20878713..20879394 /locus_tag="TCM_029139" /note="dbxref CacaoGD:Thecc1EG029139" mRNA 20878713..20879394 /locus_tag="TCM_029139" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29706.m001277" /inference="similar to AA sequence:Phytozome:POPTR_0003s06410.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16212t1" CDS 20878797..20879168 /locus_tag="TCM_029139" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27253.1" /db_xref="Phytozome:POPTR_0003s06410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9PDV8" /translation="MATYTYASGNNTSQRGVAMALALITAVVLSPLYVRGKNETRYYE MKLSSGFVLPMVLAGLIAAIRTTSSSSSMQSGARASIIPSPDPSWVLRIGGSSWGLAG ILVLLMLVLSWQESVQEFFWR" mobile_element 20879640..20879851 /note="source:scaffold_7_CACTA_0795 2885 3091" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20880344..20880390) /note="source:CACAO_on_SS_E42_scaffold_2 17437 17483" /mobile_element_type="transposon:TIR/Mutator" mobile_element 20880354..20880406 /note="source:scaffold_5_CACTA_0610 5245 5298" /mobile_element_type="transposon:TIR/CACTA" gene 20880945..20882599 /locus_tag="TCM_029140" /note="dbxref CacaoGD:Thecc1EG029140" mRNA join(20880945..20881239,20881428..20881699, 20881886..20882599) /locus_tag="TCM_029140" /product="TATA binding protein associated factor 21kDa subunit isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16840.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16840.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:PASA:2:TSA:puevd3b028178t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16217t2" mRNA join(20880945..20881239,20881431..20881699, 20881886..20882091,20882181..20882259,20882375..20882599) /locus_tag="TCM_029140" /product="TATA binding protein associated factor 21kDa subunit isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16840.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16840.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16217t2" CDS join(20881442..20881699,20881886..20882091, 20882181..20882259,20882375..20882452) /locus_tag="TCM_029140" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="TATA binding protein associated factor 21kDa subunit isoform 1" /protein_id="EOY27254.1" /db_xref="Phytozome:POPTR_0001s16840.1" /db_xref="TAIR:AT1G54140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SYH2" /translation="MAEGEEDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVV DVLTDAQVYSEHAGKQTIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKVPLPK AIPAPGIAIPPDQDTLINTNYQFAIPRKQAVEETEEDEESVDPNPSQEQKTDINPFMK DIIHEVVSLLKRKGCSSVIMMVGEQYRSLPHTKTILGLVWGCCWEF" CDS join(20881442..20881699,20881886..20882146) /locus_tag="TCM_029140" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="TATA binding protein associated factor 21kDa subunit isoform 2" /protein_id="EOY27255.1" /db_xref="Phytozome:POPTR_0001s16840.1" /db_xref="TAIR:AT1G54140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SYH2" /translation="MAEGEEDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVV DVLTDAQVYSEHAGKQTIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKVPLPK AIPAPGIAIPPDQDTLINTNYQFAIPRKQAVEETEEDEESVDPNPSQEQKTDMPQPTS QRVSFPLAKRSK" gene complement(20882666..20887608) /locus_tag="TCM_029141" /note="dbxref CacaoGD:Thecc1EG029141" mRNA complement(join(20882666..20883587,20883853..20884204, 20884287..20884445,20884947..20885407,20886146..20886331, 20886416..20887608)) /locus_tag="TCM_029141" /product="RELA/SPOT" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16830.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16830.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5239t2" CDS complement(join(20883279..20883587,20883853..20884204, 20884287..20884445,20884947..20885407,20886146..20886331, 20886416..20887123)) /locus_tag="TCM_029141" /codon_start=1 /product="RELA/SPOT" /protein_id="EOY27256.1" /db_xref="Phytozome:POPTR_0001s16830.1" /db_xref="TAIR:AT1G54130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SYH1" /translation="MAVSTIALYASPPSSVCSTPHQININSHSSYDFDLNSRSSSSTS STTASSSSQRPIVGGLSCLFSSPSVKSSFSSGGGEDLGSYRGEELKELSSSFCYSSSK FGGSSLKTSQSPVSVFQGPVSCSSCSPPTRIVREKGGDGNFQGSLRGGTNGLFNGFVR SALGSCIDYDSPSFEGQSSDLVDELPFTMEDNFTEEVNPDPYAKELLLGAQMRHKIFC EDFVVKAFYEAEKAHRGQMRASGDPYLQHCVETAVLLASIGANSTVVAAGLLHDTLDD SFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLGMADA RAVLIKLADRLHNMMTLDALPSLKQQRFAKETLEIFAPLANRLGISSWKEQLENLCFK HLNPDQHKELSSRLVDSFAEAMITSAIEKLERALKDKEIPYHVLSGRHKSLYSIYSKM LKKKLSMDEIHDIHGLRVIVENEEDCYEALRVVHQIWSEVPGKLKDYINQPKFNGYQS LHTVVIGEGTVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCKHSAFVLQMVEWARWVV TWHCETMSKDQSSIGSADSIRPPCTFPTHSDDCPFSYKPHCCQDGPVFIIMIENDKMS VQEFPANSTMMDLLERTGRGNSRWSPYGFPVKEELRPRLNHEPVSDPTCRLKMGDVVE LTPAIPDKSLTVYREEIQRMYDRGLPVSSAGRPASSMVGSRS" mobile_element complement(20893564..20894382) /note="source:CACAO_MITE53_scaffold_3 1 828" /mobile_element_type="transposon:TIR/MITE" gene 20895583..20903587 /locus_tag="TCM_029142" /note="dbxref CacaoGD:Thecc1EG029142" mRNA join(20895583..20897876,20898008..20898079, 20898261..20898350,20898488..20898592,20898949..20899008, 20899234..20899296,20899381..20899476,20899973..20900137, 20900503..20900676,20900785..20900850,20900936..20901034, 20901630..20901776,20902371..20902547,20902631..20902678, 20902783..20903024,20903266..20903587) /locus_tag="TCM_029142" /product="ARM repeat superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05298" /inference="similar to AA sequence:ricco:29706.m001273" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5114t5" mRNA join(20895583..20897876,20898008..20898079, 20898261..20898350,20898488..20898592,20898949..20899008, 20899234..20899296,20899381..20899476,20899973..20900137, 20900503..20900676,20900785..20900850,20900936..20901034, 20901630..20901776,20902371..20902678,20902783..20903195) /locus_tag="TCM_029142" /product="ARM repeat superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05298" /inference="similar to AA sequence:ricco:29706.m001273" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:PASA:2:TSA:puevd3b028180t1a2; alternateUTRof:Thecc1EG029142t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5114t5" mRNA join(20895818..20897876,20898008..20898079, 20898261..20898350,20898488..20898592,20898949..20899008, 20899234..20899296,20899381..20899476,20899973..20900137, 20900503..20900676,20900785..20900850,20900936..20901034, 20901630..20901776,20902437..20902547,20902631..20902678, 20902783..20903216) /locus_tag="TCM_029142" /product="ARM repeat superfamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene05298" /inference="similar to AA sequence:ricco:29706.m001273" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc146t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5114t5" mRNA join(20895818..20897876,20898008..20898079, 20898261..20898350,20898488..20898592,20898949..20899008, 20899234..20899296,20899381..20899476,20899973..20900137, 20900503..20900676,20900785..20900850,20900936..20901034, 20901630..20901659,20902435..20902547,20902631..20902678, 20902783..20903216) /locus_tag="TCM_029142" /product="ARM repeat superfamily protein isoform 7" /inference="alignment:exonerate-protein:2:frave:gene05298" /inference="similar to AA sequence:ricco:29706.m001273" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc146t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5114t5" mRNA join(20896053..20897876,20898005..20898079, 20898261..20898350,20898488..20898592,20898949..20899008, 20899234..20899296,20899381..20899476,20899973..20900137, 20900503..20900676,20900783..20900850,20900936..20901034, 20901630..20901776,20902371..20902547,20902631..20902678, 20902783..20903195) /locus_tag="TCM_029142" /product="ARM repeat superfamily protein isoform 4" /inference="alignment:exonerate-protein:2:frave:gene05298" /inference="similar to AA sequence:ricco:29706.m001273" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5114t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5114t5" mRNA join(20896053..20897876,20898008..20898079, 20898261..20898350,20898488..20898592,20898949..20899008, 20899234..20899296,20899381..20899476,20899973..20900137, 20900503..20900676,20900785..20900852,20900936..20901034, 20901630..20901776,20902369..20902550,20902631..20902678, 20902783..20903195) /locus_tag="TCM_029142" /product="ARM repeat superfamily protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene05298" /inference="similar to AA sequence:ricco:29706.m001273" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5114t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5114t5" CDS join(20896155..20897876,20898008..20898079, 20898261..20898350,20898488..20898592,20898949..20899008, 20899234..20899296,20899381..20899476,20899973..20900137, 20900503..20900676,20900785..20900850,20900936..20901034, 20901630..20901659,20902435..20902482) /locus_tag="TCM_029142" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:29706.m001273" /codon_start=1 /product="ARM repeat superfamily protein isoform 7" /protein_id="EOY27262.1" /db_xref="TAIR:AT1G72560.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW10" /translation="MDDVEKAILISFDESVTLDSGLKSQAVNFCQRIKETPSICSLCI EKLCFCKLVQVQFWCLQTLRDVISVKYGSMSLEEKNFIRKSVFSMACLERIDGKLCAV LESPTFIKNKLAQVLVILVYFEYPLIWSSVFVDFLPHLSKGAVLIDMFSRLLNALDDE LISLDYPRTPEEVAVAGRVKDAMRQQCVAQIVRAWYDIVSMYRSSDPEVCTTVLDCMR RYISWIDIGLIVNDAFIPLLFELILLDGLSEQLRGAAAGCVLAVVSKRMDAQSKLTLL KSLQISRVFGLISDDNDSELVLKVAALITGYAVEVLECSKRLNSEDAKVVSMELLDEV LPTVFYVMQNCEMDAAFSIVQFLSGYVATMKTLSPLQEKQMLHISQILEVIRTQIRYD PMYRNNLDILDKIGMEEEDRMVEFRKDLFVLLRNVGRVAPEVTQIFITNSFASAIASS SDRNVEEVEAALSLLYALGESMTDEAMRAGTGLLSELVTNLLSTRFPCHSNRIVALVY LETITRYMKFVQENTQYIPLVLAAFHDERGIHHPNINVSRRASYLFMRVVKLLKSKLL LFIEMILQSLQDVVARFTSMNFASEDGAHIFEAIGLLIGMEDVPLEKQSDYLSSLLTP LCQQVEAMLMNAKILTPEEYPLKIANIQQIIVAINALSKGFSERLATASRPAIGHMFK QTLDVLLQILVVFPKVEPLRTKVLSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEM VGFLLLLNQLICKFSTLVHDILEEVFPAIAGRIFSAIRRIADSSGPEANTEEIRELLE LQKTLYTFLHVITTHDLSSVFLSPKSLGYLTSIMQLLLHTSCHHKDINTRKACVQIFI RLIKDWCARPYGEEKVPGFQSFMIETFATNCCLYSVLDKSFEFGDANTLILFGEIVLA RMEVLFSDSSIKMAK" CDS join(20896155..20897876,20898008..20898079, 20898261..20898350,20898488..20898592,20898949..20899008, 20899234..20899296,20899381..20899476,20899973..20900137, 20900503..20900676,20900785..20900850,20900936..20901034, 20901630..20901776,20902371..20902460) /locus_tag="TCM_029142" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29706.m001273" /codon_start=1 /product="ARM repeat superfamily protein isoform 1" /protein_id="EOY27257.1" /db_xref="TAIR:AT1G72560.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW10" /translation="MDDVEKAILISFDESVTLDSGLKSQAVNFCQRIKETPSICSLCI EKLCFCKLVQVQFWCLQTLRDVISVKYGSMSLEEKNFIRKSVFSMACLERIDGKLCAV LESPTFIKNKLAQVLVILVYFEYPLIWSSVFVDFLPHLSKGAVLIDMFSRLLNALDDE LISLDYPRTPEEVAVAGRVKDAMRQQCVAQIVRAWYDIVSMYRSSDPEVCTTVLDCMR RYISWIDIGLIVNDAFIPLLFELILLDGLSEQLRGAAAGCVLAVVSKRMDAQSKLTLL KSLQISRVFGLISDDNDSELVLKVAALITGYAVEVLECSKRLNSEDAKVVSMELLDEV LPTVFYVMQNCEMDAAFSIVQFLSGYVATMKTLSPLQEKQMLHISQILEVIRTQIRYD PMYRNNLDILDKIGMEEEDRMVEFRKDLFVLLRNVGRVAPEVTQIFITNSFASAIASS SDRNVEEVEAALSLLYALGESMTDEAMRAGTGLLSELVTNLLSTRFPCHSNRIVALVY LETITRYMKFVQENTQYIPLVLAAFHDERGIHHPNINVSRRASYLFMRVVKLLKSKLL LFIEMILQSLQDVVARFTSMNFASEDGAHIFEAIGLLIGMEDVPLEKQSDYLSSLLTP LCQQVEAMLMNAKILTPEEYPLKIANIQQIIVAINALSKGFSERLATASRPAIGHMFK QTLDVLLQILVVFPKVEPLRTKVLSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEM VGFLLLLNQLICKFSTLVHDILEEVFPAIAGRIFSAIRRIADSSGPEANTEEIRELLE LQKTLYTFLHVITTHDLSSVFLSPKSLGYLTSIMQLLLHTSCHHKDINTRKACVQIFI RLIKDWCARPYGEEKVPGFQSFMIETFATNCCLYSVLDKSFEFGDANTLILFGEIVLA QKVMYEKFGDDFLVHFVSKGFPSAHCPQNLVEQYCQKLKGSDIKALRSFYQLLIENLR LQQNGSLVFR" CDS join(20896155..20897876,20898008..20898079, 20898261..20898350,20898488..20898592,20898949..20899008, 20899234..20899296,20899381..20899476,20899973..20900137, 20900503..20900676,20900785..20900850,20900936..20901034, 20901630..20901776,20902371..20902460) /locus_tag="TCM_029142" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29706.m001273" /codon_start=1 /product="ARM repeat superfamily protein isoform 1" /protein_id="EOY27261.1" /db_xref="TAIR:AT1G72560.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW10" /translation="MDDVEKAILISFDESVTLDSGLKSQAVNFCQRIKETPSICSLCI EKLCFCKLVQVQFWCLQTLRDVISVKYGSMSLEEKNFIRKSVFSMACLERIDGKLCAV LESPTFIKNKLAQVLVILVYFEYPLIWSSVFVDFLPHLSKGAVLIDMFSRLLNALDDE LISLDYPRTPEEVAVAGRVKDAMRQQCVAQIVRAWYDIVSMYRSSDPEVCTTVLDCMR RYISWIDIGLIVNDAFIPLLFELILLDGLSEQLRGAAAGCVLAVVSKRMDAQSKLTLL KSLQISRVFGLISDDNDSELVLKVAALITGYAVEVLECSKRLNSEDAKVVSMELLDEV LPTVFYVMQNCEMDAAFSIVQFLSGYVATMKTLSPLQEKQMLHISQILEVIRTQIRYD PMYRNNLDILDKIGMEEEDRMVEFRKDLFVLLRNVGRVAPEVTQIFITNSFASAIASS SDRNVEEVEAALSLLYALGESMTDEAMRAGTGLLSELVTNLLSTRFPCHSNRIVALVY LETITRYMKFVQENTQYIPLVLAAFHDERGIHHPNINVSRRASYLFMRVVKLLKSKLL LFIEMILQSLQDVVARFTSMNFASEDGAHIFEAIGLLIGMEDVPLEKQSDYLSSLLTP LCQQVEAMLMNAKILTPEEYPLKIANIQQIIVAINALSKGFSERLATASRPAIGHMFK QTLDVLLQILVVFPKVEPLRTKVLSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEM VGFLLLLNQLICKFSTLVHDILEEVFPAIAGRIFSAIRRIADSSGPEANTEEIRELLE LQKTLYTFLHVITTHDLSSVFLSPKSLGYLTSIMQLLLHTSCHHKDINTRKACVQIFI RLIKDWCARPYGEEKVPGFQSFMIETFATNCCLYSVLDKSFEFGDANTLILFGEIVLA QKVMYEKFGDDFLVHFVSKGFPSAHCPQNLVEQYCQKLKGSDIKALRSFYQLLIENLR LQQNGSLVFR" CDS join(20896155..20897876,20898008..20898079, 20898261..20898350,20898488..20898592,20898949..20899008, 20899234..20899296,20899381..20899476,20899973..20900137, 20900503..20900676,20900785..20900850,20900936..20901034, 20901630..20901776,20902437..20902460) /locus_tag="TCM_029142" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29706.m001273" /codon_start=1 /product="ARM repeat superfamily protein isoform 2" /protein_id="EOY27258.1" /db_xref="TAIR:AT1G72560.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW10" /translation="MDDVEKAILISFDESVTLDSGLKSQAVNFCQRIKETPSICSLCI EKLCFCKLVQVQFWCLQTLRDVISVKYGSMSLEEKNFIRKSVFSMACLERIDGKLCAV LESPTFIKNKLAQVLVILVYFEYPLIWSSVFVDFLPHLSKGAVLIDMFSRLLNALDDE LISLDYPRTPEEVAVAGRVKDAMRQQCVAQIVRAWYDIVSMYRSSDPEVCTTVLDCMR RYISWIDIGLIVNDAFIPLLFELILLDGLSEQLRGAAAGCVLAVVSKRMDAQSKLTLL KSLQISRVFGLISDDNDSELVLKVAALITGYAVEVLECSKRLNSEDAKVVSMELLDEV LPTVFYVMQNCEMDAAFSIVQFLSGYVATMKTLSPLQEKQMLHISQILEVIRTQIRYD PMYRNNLDILDKIGMEEEDRMVEFRKDLFVLLRNVGRVAPEVTQIFITNSFASAIASS SDRNVEEVEAALSLLYALGESMTDEAMRAGTGLLSELVTNLLSTRFPCHSNRIVALVY LETITRYMKFVQENTQYIPLVLAAFHDERGIHHPNINVSRRASYLFMRVVKLLKSKLL LFIEMILQSLQDVVARFTSMNFASEDGAHIFEAIGLLIGMEDVPLEKQSDYLSSLLTP LCQQVEAMLMNAKILTPEEYPLKIANIQQIIVAINALSKGFSERLATASRPAIGHMFK QTLDVLLQILVVFPKVEPLRTKVLSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEM VGFLLLLNQLICKFSTLVHDILEEVFPAIAGRIFSAIRRIADSSGPEANTEEIRELLE LQKTLYTFLHVITTHDLSSVFLSPKSLGYLTSIMQLLLHTSCHHKDINTRKACVQIFI RLIKDWCARPYGEEKVPGFQSFMIETFATNCCLYSVLDKSFEFGDANTLILFGEIVLA QKVMYEKFGDDFLVHFVSKGFPSAHCPQNLVEQYCQKLKNGSLVFR" CDS join(20896155..20897876,20898008..20898079, 20898261..20898350,20898488..20898592,20898949..20899008, 20899234..20899296,20899381..20899476,20899973..20900137, 20900503..20900676,20900785..20900852,20900936..20900960) /locus_tag="TCM_029142" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29706.m001273" /codon_start=1 /product="ARM repeat superfamily protein isoform 3" /protein_id="EOY27259.1" /db_xref="TAIR:AT1G72560.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW10" /translation="MDDVEKAILISFDESVTLDSGLKSQAVNFCQRIKETPSICSLCI EKLCFCKLVQVQFWCLQTLRDVISVKYGSMSLEEKNFIRKSVFSMACLERIDGKLCAV LESPTFIKNKLAQVLVILVYFEYPLIWSSVFVDFLPHLSKGAVLIDMFSRLLNALDDE LISLDYPRTPEEVAVAGRVKDAMRQQCVAQIVRAWYDIVSMYRSSDPEVCTTVLDCMR RYISWIDIGLIVNDAFIPLLFELILLDGLSEQLRGAAAGCVLAVVSKRMDAQSKLTLL KSLQISRVFGLISDDNDSELVLKVAALITGYAVEVLECSKRLNSEDAKVVSMELLDEV LPTVFYVMQNCEMDAAFSIVQFLSGYVATMKTLSPLQEKQMLHISQILEVIRTQIRYD PMYRNNLDILDKIGMEEEDRMVEFRKDLFVLLRNVGRVAPEVTQIFITNSFASAIASS SDRNVEEVEAALSLLYALGESMTDEAMRAGTGLLSELVTNLLSTRFPCHSNRIVALVY LETITRYMKFVQENTQYIPLVLAAFHDERGIHHPNINVSRRASYLFMRVVKLLKSKLL LFIEMILQSLQDVVARFTSMNFASEDGAHIFEAIGLLIGMEDVPLEKQSDYLSSLLTP LCQQVEAMLMNAKILTPEEYPLKIANIQQIIVAINALSKGFSERLATASRPAIGHMFK QTLDVLLQILVVFPKVEPLRTKVLSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEM VGFLLLLNQLICKFSTLVHDILEEVFPAIAGRIFSAIRRIADSSGPEANTEEIRELLE LQKTLYTFLHVITTHDLSSVFLSPKSLGYLTSIMQLLLHTSCHHKDINTRKACVQIFI RLIKDWCARPYGEEKVYLVSKVL" CDS join(20896155..20897876,20898005..20898079, 20898261..20898350,20898488..20898592,20898949..20899008, 20899234..20899296,20899381..20899476,20899973..20900137, 20900503..20900676,20900783..20900812) /locus_tag="TCM_029142" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29706.m001273" /codon_start=1 /product="ARM repeat superfamily protein isoform 4" /protein_id="EOY27260.1" /db_xref="TAIR:AT1G72560.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GW10" /translation="MDDVEKAILISFDESVTLDSGLKSQAVNFCQRIKETPSICSLCI EKLCFCKLVQVQFWCLQTLRDVISVKYGSMSLEEKNFIRKSVFSMACLERIDGKLCAV LESPTFIKNKLAQVLVILVYFEYPLIWSSVFVDFLPHLSKGAVLIDMFSRLLNALDDE LISLDYPRTPEEVAVAGRVKDAMRQQCVAQIVRAWYDIVSMYRSSDPEVCTTVLDCMR RYISWIDIGLIVNDAFIPLLFELILLDGLSEQLRGAAAGCVLAVVSKRMDAQSKLTLL KSLQISRVFGLISDDNDSELVLKVAALITGYAVEVLECSKRLNSEDAKVVSMELLDEV LPTVFYVMQNCEMDAAFSIVQFLSGYVATMKTLSPLQEKQMLHISQILEVIRTQIRYD PMYRNNLDILDKIGMEEEDRMVEFRKDLFVLLRNVGRVAPEVTQIFITNSFASAIASS SDRNVEEVEAALSLLYALGESMTDEAMRAGTGLLSELVTNLLSTRFPCHSNRIVALVY LETITRYMKFVQENTQYIPLVLAAFHDERGIHHPNINVSRRASYLFMRVVKLLKSKLL LFIEMILQQSLQDVVARFTSMNFASEDGAHIFEAIGLLIGMEDVPLEKQSDYLSSLLT PLCQQVEAMLMNAKILTPEEYPLKIANIQQIIVAINALSKGFSERLATASRPAIGHMF KQTLDVLLQILVVFPKVEPLRTKVLSFIHRMVDTLGASVFPYLPKALEQLLAESEPKE MVGFLLLLNQLICKFSTLVHDILEEVFPAIAGRIFSAIRRIADSSGPEANTEEIRELL ELQKTLYTFLHVITTHDLSSVFLSPKSLGYLTSIMQLLLHTSCHHKDINTRKRLVYRY LLD" mobile_element 20904890..20904960 /note="source:scaffold_5_CACTA_0607 5838 5912" /mobile_element_type="transposon:TIR/CACTA" gene complement(20905172..20906683) /locus_tag="TCM_029143" /note="dbxref CacaoGD:Thecc1EG029143" mRNA complement(join(20905172..20906170,20906306..20906683)) /locus_tag="TCM_029143" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.29 coverage" CDS complement(join(20905895..20906170,20906306..20906332)) /locus_tag="TCM_029143" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27263.1" /translation="MRKHESRSKAQRKQLQYYLTRAAVSLSRFLSWLAIYLNQLLIKL YIASPLNPCHREEGQIPLASRSWDCIPKVMKLINFSNFGYNNMMKGPPTPKLYLLH" gene 20906158..20909578 /locus_tag="TCM_029144" /note="dbxref CacaoGD:Thecc1EG029144" mRNA join(20906158..20906248,20907349..20907976, 20908068..20908203,20908294..20908430,20908547..20908670, 20908758..20909578) /locus_tag="TCM_029144" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29706.m001272" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037406t1" /inference="similar to AA sequence:ricco:29706.m001272" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1016t1_C1" CDS join(20907596..20907976,20908068..20908203, 20908294..20908430,20908547..20908670,20908758..20909350) /locus_tag="TCM_029144" /note="dbxref ricco:29706.m001272; paralog of Thecc1EG037406t1" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY27264.1" /db_xref="TAIR:AT1G72540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAH1" /translation="MAFKRCLSWKNILPSCIKSNNPSSGPKVHASKHSPSQRLSLSDI SHPGSPLSLSDLSNSLISLHIFTLKELELITHKFSKSNYLGEGGFGPVYKGFIDDNLR PGLKAQSVAVKVLDLDGSQGHREWLAEVIFLGQLKHPHLVNLIGYCYEQEHRLLVYEY MARGSLEDQLFKRYGPPLPWLTRLKIAVGTAKGLAFLHEEEKPVIYRDFKTSNILLDL AYNAKVSDFGLATDGPEGEATHVTTCVMGTEGYAAPEYITTGHLTTMSDVFSFGVVLL ELLTGRRSVDKARPGREKNLVEWARPLLKDPYKLDGIMDTRLEGQYSTEGARKAAALA YQCLSNHPKSRPTMSNVVKALEPLLDLTDIPIGPFVYIVPTQGKNDEPIVQKIEGREE KQCDDEIKIEKNGGQRGEKKEKSRLPRQKGRGRRRRVKPSRSRAVYSDTYLYRTLGTS LYCPKH" gene complement(20910730..20915938) /locus_tag="TCM_029145" /note="dbxref CacaoGD:Thecc1EG029145" mRNA complement(join(20910730..20911762,20912668..20912733, 20912826..20912923,20913002..20913193,20914110..20914192, 20914669..20914776,20914914..20915034,20915629..20915938)) /locus_tag="TCM_029145" /product="Plastid developmental protein DAG isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016740001" /inference="similar to AA sequence:TAIR:AT1G72530.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5076t1" mRNA complement(join(20911006..20911762,20912668..20912733, 20912826..20912923,20913002..20913312,20914669..20914776, 20914914..20915147)) /locus_tag="TCM_029145" /product="Plastid developmental protein DAG isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016740001" /inference="similar to AA sequence:Phytozome:GSVIVT01016740001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1132t6_C2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1134t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5076t1" CDS complement(join(20911629..20911762,20912668..20912733, 20912826..20912923,20913002..20913312,20914669..20914740)) /locus_tag="TCM_029145" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Plastid developmental protein DAG isoform 2" /protein_id="EOY27266.1" /db_xref="Phytozome:GSVIVT01016740001" /db_xref="TAIR:AT1G72530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAH0" /translation="MGKDWRSIKANSLVRSKSTQKEVQIIQQRTRKKKQIHPKKMSSI FVQKLARRPLSTYLSRTLFRYFSIDSGSNNSVVTERAELTRVPTLVEGCDYEHWFVVM EAPKGYPLRDEIVDTYIKTLAMALGSEEEAKKSIYSVSTKYYYAFGCKGPEDLTFKLK SLPNVKWVLPDSYLVHGDNSYGGEPFLDGKVVQYDDKYHSDWIRVQNDDESKETHPKN ERGRQKKK" CDS complement(join(20911629..20911762,20912668..20912733, 20912826..20912923,20913002..20913193,20914110..20914192, 20914669..20914740)) /locus_tag="TCM_029145" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Plastid developmental protein DAG isoform 1" /protein_id="EOY27265.1" /db_xref="TAIR:AT1G72530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAH0" /translation="MGKDWRSIKANSLVRSKSTQKEVQVKAASTKESQTIYQCAAILI SLFNMTTIYFSIDSGSNNSVVTERAELTRVPTLVEGCDYEHWFVVMEAPKGYPLRDEI VDTYIKTLAMALGSEEEAKKSIYSVSTKYYYAFGCKGPEDLTFKLKSLPNVKWVLPDS YLVHGDNSYGGEPFLDGKVVQYDDKYHSDWIRVQNDDESKETHPKNERGRQKKK" mobile_element 20913408..20914402 /note="source:CACAO_Helitron_S_E29_scaffold_3 3246 4232" /mobile_element_type="transposon:Helitron" mobile_element 20914397..20916131 /note="source:CACAO_Helitron_S_E29_scaffold_3 6495 8237" /mobile_element_type="transposon:Helitron" mobile_element 20916078..20916155 /note="source:scaffold_9_CACTA_0942 17009 17081" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20918036..20918981) /note="source:CACAO_on_E6_scaffold_1 2257 3199" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(20918974..20919242) /note="source:CACAO_M_E58877_F5_scaffold_9 20470 20737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20919128..20919335) /note="source:CACAO_M_E52694_F25_scaffold_8 4883 5093" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20919510..20920271) /note="source:CACAO_M_E52694_F25_scaffold_8 4060 4885" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20928022..20931686) /note="source:INTACT700_F304_scaffold_7-int 5389 9053" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20933708..20933846) /note="source:CACAO_M_E52694_F25_scaffold_8 4883 5024" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20934021..20934092) /note="source:CACAO_M_E52694_F25_scaffold_8 4814 4885" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20934249..20934779) /note="source:CACAO_M_E52694_F25_scaffold_8 4063 4594" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20934880..20935269) /note="source:INTACT700_F304_scaffold_7-int 1382 1770" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20935160..20935906 /note="source:INTACT579_F10_scaffold_3-int 5004 5744" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20935907..20938171) /note="source:CACAO_on_E6_scaffold_1 1 2266" /mobile_element_type="transposon:TIR/hAT" mobile_element 20940289..20940336 /note="source:INTACT505_F28_scaffold_3-int 12906 12948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20940295..20941936) /note="source:CACAO_M_E84368_F4_scaffold_10 4507 6138" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(20942547..20950834) /locus_tag="TCM_029149" /note="dbxref CacaoGD:Thecc1EG029149" mRNA complement(join(20942547..20943628,20944463..20945961, 20950594..20950834)) /locus_tag="TCM_029149" /product="Cytochrome P450 superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29706.m001271" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037521t1" /inference="similar to AA sequence:ricco:29706.m001271" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16228t1" CDS complement(join(20942999..20943628,20944463..20945368)) /locus_tag="TCM_029149" /note="dbxref ricco:29706.m001271; paralog of Thecc1EG037521t1" /codon_start=1 /product="Cytochrome P450 superfamily protein" /protein_id="EOY27267.1" /db_xref="TAIR:AT5G07990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q69P73" /translation="METPSWASYLAAWLATIALVLLSLRLRRRRKLNLPPGPKPWPII GNLNLIGSLPHRSIHALSQKYGPIMQLRFGSFPVIVGSSVEMAKAILRTHDVAFAGRP KIAAGKYTTYNYSDITWSPYGPYWRQARKMCLTELFSAKRLESYEYIRREEMNLLLKG LCNLSGSPICLKDHLSSLSLNVISRMVLGKKYTEGTGENEIVTPKEFKEMLDELFLLN GVLDIGDSIPWLSFLDLQGYIKRMKALSKKFDRFLEHVLDEHNARRKGVKDYVAKDMV DVLLQLADDPHLDVKLERHGVKAFSQDLIAGGTESSAVTVEWAISELLKKPEIFAKAT EELDRVIGRDRWVEENDIANLPYVNSIAKETMRLHPVAPMLVPRLAREDCQLAGYDIP KDTRVLVNVWTIGRDPTLWDNPDEFCPDRFIGKAIDVKGHDFELLPFGAGRRMCPGYP LGIKVIQASLANLLHGFTWKLPGNMAKEDLNMEEIFGLSTPKKFPLEAVAQPRLPLHM YSQ" mobile_element complement(20947532..20947797) /note="source:scaffold_7_CACTA_0789 1900 2165" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20948913..20949387 /note="source:scaffold_4_CACTA_0482 16796 17277" /mobile_element_type="transposon:TIR/CACTA" gene complement(20950309..20956483) /locus_tag="TCM_029150" /note="dbxref CacaoGD:Thecc1EG029150" mRNA complement(join(20950309..20951890,20952098..20952364, 20952451..20952752,20952854..20953047,20953208..20953540, 20954094..20954331,20955107..20955387,20955652..20956483)) /locus_tag="TCM_029150" /product="Lipoxygenase 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029861t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16780.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5120t1" CDS complement(join(20951134..20951890,20952098..20952364, 20952451..20952752,20952854..20953047,20953208..20953540, 20954094..20954331,20955107..20955387,20955652..20956045)) /locus_tag="TCM_029150" /note="paralog of Thecc1EG029861t1" /codon_start=1 /product="Lipoxygenase 3" /protein_id="EOY27268.1" /db_xref="Phytozome:POPTR_0001s16780.1" /db_xref="TAIR:AT1G17420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LNR3" /translation="MALAKEMMGRSLIERSSFLSSSKVFLNCTSTTFQRKQNQFLVNP VLLPLEQRRVRLRKVAKPPVAAISEDLIKAVPDQKEKAVKFKVRAAVTVRNKNKEDFK ETLVKHLDAFTDKIGRNVVLELISTEEDPKTKGPKKSSEAVLKDWSKKANVKAERVHY TAEFIVDSNFGVPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSKKDHPGK RIFFSNQPYLPSETPKGLKALREKELRDLRGNGKGARKLSDRIYDFNVYNDLGNPDRG NEFARPTLGGEKIPYPRRCRTGRPPTETDIQAESRVEKPLPTYVPRDEQFEESKQNTF SAGRLRAVLHNLLPQLKASISAYNRDINSFADIDGLYKEGLLLKLGLQEEFVKNLPLP KMVSKIQESSEGLLKFETPKVVSKDKFAWLRDDEFARQALAGVNPVNIERLATFPPVS KLDPEIYGPQESALKEEHIVGQLNGMTVKQALEENKLFIVDYHDIYLPFLDRINALDG QKSYGTRTIFFLTPSGTLKPIAIELSLPPTAPRSRSKRVVTPPVDATTNWIWQLAKAH VCSNDAGVHQLVNHWLRTHACMEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINSVAR QTLISADGVIESCFTPGRYCMEMSAAAYRSHWRFDKEGLPADLIRRGIAEPDPTQPHG VKLLIEDYPYASDGLLIWNAIENWVRTYVNRYYPNSSVISNDKELQSWYHESIHVGHA DISHEDWWPTLNTADDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNHPPLMRRLIP EENDPEYANFLADPQKYFLSALPSLLQATKYMAVVDTLSTHSPDEEYLGERQQPSIWS GDAEIIEASFGFSAEIRRIEKEIEKRNADPSLKNRCGAGVISYELLAPSSGPGVTCRG VPNSVSI" mobile_element complement(20964442..20964485) /note="source:scaffold_5_CACTA_0584 1922 1965" /mobile_element_type="transposon:TIR/CACTA" gene complement(20964525..20965258) /locus_tag="TCM_029151" /note="dbxref CacaoGD:Thecc1EG029151" mRNA complement(20964525..20965258) /locus_tag="TCM_029151" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029153t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage" CDS complement(20964904..20965176) /locus_tag="TCM_029151" /note="paralog of Thecc1EG029153t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27269.1" /translation="MAQFSQRSGQSADALKKKLEGVFNSYAKGGSLNNSQLREAFEHL GAKMPHKETEEAMNYADKNKDNVIRGDEEMNSLVQYALQKGYGEDA" gene complement(20965566..20966447) /locus_tag="TCM_029152" /note="dbxref CacaoGD:Thecc1EG029152" mRNA complement(20965566..20966447) /locus_tag="TCM_029152" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.33 coverage" CDS complement(20965830..20966024) /locus_tag="TCM_029152" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27270.1" /translation="MTQQTTFTGFPTQKSGGNYTQHKGIQPKKEGKRNTYLCALVSAR IVKVESDAAMMIREINKKRV" mobile_element complement(20966333..20966597) /note="source:CACAO_M_S_E16683_F28_scaffold_2 3681 3970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20967572..20967703) /note="source:CACAO_M_S_E16721_F36_scaffold_2 19256 19392" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20967859..20967908) /note="source:INTACT726_F314_scaffold_5-int 1398 1447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20967914..20968366) /note="source:CACAO_M_S_E16721_F36_scaffold_2 4182 4635" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20968582..20969597) /note="source:CACAO_M_S_E16683_F28_scaffold_2 591 1644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20970315..20971141) /note="source:CACAO_M_S_E64889_F3_scaffold_5 873 1696" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20971138..20974309) /note="source:CACAO_M_E12058_F3_scaffold_2 4145 7295" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20974306..20975373 /note="source:INTACT7_F3_scaffold_8-int 4122 5214" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20975456..20978260 /note="source:INTACT319_F3_scaffold_1-int 7799 10622" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20978261..20980191) /note="source:CACAO_M_S_E33088_F266_scaffold_4 634 2558" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20980779..20980998) /note="source:CACAO_M_S_E119615_F3_scaffold_9 17329 17548" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20983167..20984172) /locus_tag="TCM_029153" /note="dbxref CacaoGD:Thecc1EG029153" mRNA complement(20983167..20984172) /locus_tag="TCM_029153" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029151t1" /note="quality class is strong-utrpoor, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.76 coverage" CDS complement(20983567..20983833) /locus_tag="TCM_029153" /note="paralog of Thecc1EG029151t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27271.1" /translation="MGLISRRRDRSAKEPKLKGVFKSYATLGSLNSSELREAFEHLGA KMPHKETEEAMYYADKNKDNLISGDDEFNSLVQYALQKGYGEDA" gene complement(20988853..20993345) /locus_tag="TCM_029154" /note="dbxref CacaoGD:Thecc1EG029154" mRNA complement(join(20988853..20988923,20988989..20989532, 20992810..20993345)) /locus_tag="TCM_029154" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:27969.m000022" /inference="similar to AA sequence:ricco:27969.m000022" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage" CDS complement(20989010..20989411) /locus_tag="TCM_029154" /note="dbxref ricco:27969.m000022" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27272.1" /translation="MAVDQQTTHKIPTRTSLAATFQCQARRRIFLLRRNKMPTVRLGG KKPRRGLFIVRILKKIRLRWLKLQYTCMLRKLRKYYRNLIKDIVEAGASVEALQQRMF MESTFAVPVLGVSFSSFPSATGSDRPRALFF" mobile_element 20991673..20992910 /note="source:scaffold_2_CACTA_0244 13469 14700" /mobile_element_type="transposon:TIR/CACTA" gene complement(20993519..20997653) /locus_tag="TCM_029155" /note="dbxref CacaoGD:Thecc1EG029155" mRNA complement(join(20993519..20993798,20994079..20996721, 20997518..20997653)) /locus_tag="TCM_029155" /product="Subtilase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016735001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000749t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06530.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.23 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc780t1" CDS complement(20994271..20996574) /locus_tag="TCM_029155" /note="paralog of Thecc1EG000749t1" /codon_start=1 /product="Subtilase family protein" /protein_id="EOY27273.1" /db_xref="Phytozome:POPTR_0003s06530.1" /db_xref="TAIR:AT3G14067.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVJ1" /translation="MAISFFFFLSLLFIPFSSSSSDRPENFIIHVSKSHKPSLFSSHH HWYSSIIHSLPPSPHPTKLLYTYERAINGFSARLTATQAEKLRELPGILSVIPDQVRQ IHTTRTPQFLGLSDGVGLWQNSYYGDGVIIGVLDTGIWPERPSFKDSGLSPVPDSWKG ICETGPDFPASACSRKIIGARAFYKGYESYLEGPMDETKESKSPRDTEGHGTHTASTA AGSVVSNASLFEFAYGEARGMATKARIAAYKICWSLGCFDSDLLAAMDQAIADGVNVI SLSVGATGYAPQYDHDSIAIGAFGAAQHGIVVSCSAGNSGPGPYTAVNIAPWILTVGA STIDREFPADAILGDGRIFGGVSLYSGDPLVDIKLPLVYAGDSGNRYCYMGSLSPSKV QGKIVFCDRGGNARVEKGFAVKLAGGLGMILANTAESGEELIADAHLIPATTVGEKAG NEIRQYIKISQFPTATIVFHGTVIGPSPPAPKVAAFSSRGPNHLTPEILKPDVIAPGV NILAGWTGFIGPSQLNIDTRRVNFNIISGTSMSCPHVSGLAALLIKAYPNWSPAAIKS ALMTTAYSLDNSGNTIKDLATGVESSPFVYGAGHVDPNIALMPGLVYDIDDGDYVAFL CSIGYDSKRIAIFVREPTGPDVCEGKLATPGNLNYPSFSVVFDSNDHVVKYKRTVKNV GPSVDAVYEAKVNAPPGVEISVSPSKLEFSAENQTLSYEITFASDGLALFAVALEAFG SIEWSDGVHLVRSPIAVRWLQGLKDSI" mobile_element 20997294..20999768 /note="source:INTACT566_F257_scaffold_7-int 1 2448" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20999768..21003113 /note="source:INTACT566_F257_scaffold_7-int 2648 5946" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(21000341..21012665) /locus_tag="TCM_029157" /note="dbxref CacaoGD:Thecc1EG029157" mRNA complement(join(21000341..21000402,21005789..21005925, 21006199..21006277,21006381..21006425,21006576..21006628, 21007846..21007994,21009451..21011439,21012401..21012665)) /locus_tag="TCM_029157" /product="Cation calcium exchanger 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16740.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037513t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06520.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5126t2" mobile_element complement(21003111..21003547) /note="source:scaffold_4_CACTA_0505 4956 5428" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21003532..21004005) /note="source:CACAO_M_E27_F84_scaffold_1 1 492" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(21005839..21005925,21006199..21006277, 21006381..21006425,21006576..21006628,21007846..21007994, 21009451..21011419)) /locus_tag="TCM_029157" /note="paralog of Thecc1EG037513t1" /codon_start=1 /product="Cation calcium exchanger 4" /protein_id="EOY27274.1" /db_xref="Phytozome:POPTR_0003s06520.1" /db_xref="TAIR:AT1G54115.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SYG9" /translation="MRNTCIYSCKNPKFHGIFNGLSAVVLFSLFYTRVDFLRNPHIGQ SSLLVNHNLTQRTGFADGFDHVSVIHRKISELDANSSNLAVRNGQENELNVNLSNPAL CTGLFDHKGFANQCEFLKANPHCSSDGFFDYIKFFYCGCGEFKIVGYVILGFWLAALF YLLGNTAADYFCCSLEKLSHLLRLPPTVAGVALLPLGNGAPDVFASIAAFLGTDTGEV GLNSVLGGAVFVTCVVVGTVSLCVAEKGVQIDKRCFIRDICFFLFTLMSLMMILVIGK VSVWGTIVFVLIYVIYAFSVAANEILRKHARRLKLDVVTPLLPVRGSLFSQGSEEDVF VYSSLLDVDTEDDPPQLPSSLPQWMWASNVAIYSNHFMKVSSFEEERPPWGWTEEGME TNDSSFSCSKLFSLLELPLRVPRRLTIPLVEQESWSKPYAVASASLAPVLLAFLWNSQ GDVGSLGRVVAWFIGVAVGCTLGILAYQHTISDHPPRRFLIPWVLGGFFMSIVWFYMI ANELVALLVAFGVIFGINPSILGVTILAWGNSMGDLVSNVALAMNGGDGVQIALSGCY AGPMFNTLVGLGISMLLGAWSKSPSSYVVPQDSSLFYTMGFLMSGLIWALIVLPRNDM RPSKILGVGLIMLYLIFLSFRVSSAMGLISLGGDFLMDGSSEASPGATAVSPRSPPGS LDLYGKRTQMFKVQALEREIGLLQEELKSVEGLQPASRYCKEVDDFVGAKHDPLVTKT QNIHKAHHCWKNLWYSLLAPTLDSKCSRQPSKAICTNLEQGKELYLLFSLLLF" gene 21012653..21019139 /locus_tag="TCM_029158" /note="dbxref CacaoGD:Thecc1EG029158" mRNA join(21012653..21012950,21013100..21013236, 21013722..21013808,21013888..21014019,21014723..21014795, 21015105..21015127,21015217..21015280,21015557..21015602, 21016248..21016428,21016791..21016967,21017066..21017230, 21017685..21017825,21017974..21018071,21018260..21018409, 21018520..21018616,21018943..21019113) /locus_tag="TCM_029158" /product="Aldehyde dehydrogenase 7B4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037512t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06570.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc305t12; alternateUTRof:Thecc1EG029158t2; inference alignment:Newbler:10:TSA:cgbaP2_g01269t00002; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc306t11_C1" mRNA join(21012654..21012950,21013100..21013236, 21013722..21013808,21013888..21014019,21014723..21014795, 21015105..21015127,21015217..21015280,21015557..21015602, 21016248..21016428,21016791..21016967,21017066..21017230, 21017685..21017825,21017974..21018071,21018260..21018409, 21018669..21019139) /locus_tag="TCM_029158" /product="Aldehyde dehydrogenase 7B4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037512t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06570.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc306t11_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc306t11_C1" mRNA join(21012654..21012950,21013100..21013236, 21013722..21013808,21013888..21014019,21014723..21014795, 21015557..21015602,21016248..21016428,21016791..21016967, 21017066..21017230,21017685..21017825,21017974..21018071, 21018260..21018409,21018669..21019139) /locus_tag="TCM_029158" /product="Aldehyde dehydrogenase 7B4 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037512t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06570.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc306t2_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc306t11_C1; inference alignment:Newbler:10:TSA:cgbaP2_g01269t00002" mRNA join(21012654..21012950,21013100..21013236, 21013722..21013808,21013888..21014019,21014723..21014795, 21015105..21015127,21015217..21015280,21015557..21015602, 21016248..21016428,21016791..21016967,21017066..21017230, 21017685..21017825,21017974..21018409) /locus_tag="TCM_029158" /product="Aldehyde dehydrogenase 7B4 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037512t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06570.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc312t5_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc306t11_C1; inference alignment:Newbler:10:TSA:cgbaP2_g01269t00002" mRNA join(21012773..21012950,21013100..21013236, 21013722..21013808,21013888..21014019,21014723..21014795, 21015105..21015127,21015217..21015280,21015557..21015602, 21016248..21016428,21016791..21016967,21017066..21017230, 21017685..21017825,21017974..21018071,21018260..21018409, 21018520..21018586,21018678..21019086) /locus_tag="TCM_029158" /product="Aldehyde dehydrogenase 7B4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037512t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06570.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5323t4; inference alignment:Newbler:10:TSA:cgbaP2_g01269t00002; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc306t11_C1" CDS join(21013102..21013236,21013722..21013808, 21013888..21014019,21014723..21014795,21015105..21015127, 21015217..21015280,21015557..21015602,21016248..21016428, 21016791..21016967,21017066..21017230,21017685..21017825, 21017974..21018071,21018260..21018409,21018669..21018684) /locus_tag="TCM_029158" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037512t1" /codon_start=1 /product="Aldehyde dehydrogenase 7B4 isoform 1" /protein_id="EOY27275.1" /db_xref="Phytozome:POPTR_0003s06570.1" /db_xref="TAIR:AT1G54100.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9DBF1" /translation="MGFARKQYEFLSEIGLSTSNLGCFVNGTWKGSGPVVSTVNPANN QIIAEVGEASIQDYEDGMQACNEAAKIWMQVPAPKRGDIVRQIGDSLRTKLQQLGRLV SLEMGKILPEGIGEVQEIIDMCDFAVGLSRQLNGSVIPSERPNHMMLEMWNPLGIVGV ITAFNFPCAVLGWNACIALVCGNCIVWKGAPTTPLVTIAMTKLVAGVLEKNNLPGAIF TSFCGGAEIGEAIAKDRRIPLVSFTGSSTVGLKVQQTVNARFGKCLLELSGNNAIIVM DDADVQLAVRSVLFAAVGTAGQRCTTCRRLLLHESIYQRVLDQLLDVYKQVKIGDPLQ RGTLLGPLHTSSSRKNFEKGIEIIKSQGGKILTGGGLIESEGNFVQPTIVEISPNADV VKEELFAPVLYVMKFKTLNEAIEINNSVPQGLSSSIFTRKPEVIFKWIGPLGSDCGIV NVNIPTNGAEIGGAFGGEKATGGGREAGSDSWKQYMRRSTCKVRT" CDS join(21013102..21013236,21013722..21013808, 21013888..21014019,21014723..21014795,21015557..21015602, 21016248..21016428,21016791..21016967,21017066..21017230, 21017685..21017825,21017974..21018071,21018260..21018409, 21018669..21018684) /locus_tag="TCM_029158" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG037512t1" /codon_start=1 /product="Aldehyde dehydrogenase 7B4 isoform 5" /protein_id="EOY27279.1" /db_xref="Phytozome:POPTR_0003s06570.1" /db_xref="TAIR:AT1G54100.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9DBF1" /translation="MGFARKQYEFLSEIGLSTSNLGCFVNGTWKGSGPVVSTVNPANN QIIAEVGEASIQDYEDGMQACNEAAKIWMQVPAPKRGDIVRQIGDSLRTKLQQLGRLV SLEMGKILPEGIGEVQEIIDMCDFAVGLSRQLNGSVIPSERWNACIALVCGNCIVWKG APTTPLVTIAMTKLVAGVLEKNNLPGAIFTSFCGGAEIGEAIAKDRRIPLVSFTGSST VGLKVQQTVNARFGKCLLELSGNNAIIVMDDADVQLAVRSVLFAAVGTAGQRCTTCRR LLLHESIYQRVLDQLLDVYKQVKIGDPLQRGTLLGPLHTSSSRKNFEKGIEIIKSQGG KILTGGGLIESEGNFVQPTIVEISPNADVVKEELFAPVLYVMKFKTLNEAIEINNSVP QGLSSSIFTRKPEVIFKWIGPLGSDCGIVNVNIPTNGAEIGGAFGGEKATGGGREAGS DSWKQYMRRSTCKVRT" CDS join(21013102..21013236,21013722..21013808, 21013888..21014019,21014723..21014795,21015105..21015127, 21015217..21015280,21015557..21015602,21016248..21016428, 21016791..21016967,21017066..21017230,21017685..21017825, 21017974..21018071,21018260..21018409,21018520..21018574) /locus_tag="TCM_029158" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037512t1" /codon_start=1 /product="Aldehyde dehydrogenase 7B4 isoform 2" /protein_id="EOY27276.1" /db_xref="Phytozome:POPTR_0003s06570.1" /db_xref="TAIR:AT1G54100.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9DBF1" /translation="MGFARKQYEFLSEIGLSTSNLGCFVNGTWKGSGPVVSTVNPANN QIIAEVGEASIQDYEDGMQACNEAAKIWMQVPAPKRGDIVRQIGDSLRTKLQQLGRLV SLEMGKILPEGIGEVQEIIDMCDFAVGLSRQLNGSVIPSERPNHMMLEMWNPLGIVGV ITAFNFPCAVLGWNACIALVCGNCIVWKGAPTTPLVTIAMTKLVAGVLEKNNLPGAIF TSFCGGAEIGEAIAKDRRIPLVSFTGSSTVGLKVQQTVNARFGKCLLELSGNNAIIVM DDADVQLAVRSVLFAAVGTAGQRCTTCRRLLLHESIYQRVLDQLLDVYKQVKIGDPLQ RGTLLGPLHTSSSRKNFEKGIEIIKSQGGKILTGGGLIESEGNFVQPTIVEISPNADV VKEELFAPVLYVMKFKTLNEAIEINNSVPQGLSSSIFTRKPEVIFKWIGPLGSDCGIV NVNIPTNGAEIGGAFGGEKATGGGREAGSDSWKQYMRRSTCTINYGNELPLAQGINFG " CDS join(21013102..21013236,21013722..21013808, 21013888..21014019,21014723..21014795,21015105..21015127, 21015217..21015280,21015557..21015602,21016248..21016428, 21016791..21016967,21017066..21017230,21017685..21017825, 21017974..21018071,21018260..21018409,21018520..21018574) /locus_tag="TCM_029158" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG037512t1" /codon_start=1 /product="Aldehyde dehydrogenase 7B4 isoform 2" /protein_id="EOY27277.1" /db_xref="Phytozome:POPTR_0003s06570.1" /db_xref="TAIR:AT1G54100.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9DBF1" /translation="MGFARKQYEFLSEIGLSTSNLGCFVNGTWKGSGPVVSTVNPANN QIIAEVGEASIQDYEDGMQACNEAAKIWMQVPAPKRGDIVRQIGDSLRTKLQQLGRLV SLEMGKILPEGIGEVQEIIDMCDFAVGLSRQLNGSVIPSERPNHMMLEMWNPLGIVGV ITAFNFPCAVLGWNACIALVCGNCIVWKGAPTTPLVTIAMTKLVAGVLEKNNLPGAIF TSFCGGAEIGEAIAKDRRIPLVSFTGSSTVGLKVQQTVNARFGKCLLELSGNNAIIVM DDADVQLAVRSVLFAAVGTAGQRCTTCRRLLLHESIYQRVLDQLLDVYKQVKIGDPLQ RGTLLGPLHTSSSRKNFEKGIEIIKSQGGKILTGGGLIESEGNFVQPTIVEISPNADV VKEELFAPVLYVMKFKTLNEAIEINNSVPQGLSSSIFTRKPEVIFKWIGPLGSDCGIV NVNIPTNGAEIGGAFGGEKATGGGREAGSDSWKQYMRRSTCTINYGNELPLAQGINFG " CDS join(21013102..21013236,21013722..21013808, 21013888..21014019,21014723..21014795,21015105..21015127, 21015217..21015280,21015557..21015602,21016248..21016428, 21016791..21016967,21017066..21017230,21017685..21017825, 21017974..21018075) /locus_tag="TCM_029158" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG037512t1" /codon_start=1 /product="Aldehyde dehydrogenase 7B4 isoform 4" /protein_id="EOY27278.1" /db_xref="Phytozome:POPTR_0003s06570.1" /db_xref="TAIR:AT1G54100.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXV2" /translation="MGFARKQYEFLSEIGLSTSNLGCFVNGTWKGSGPVVSTVNPANN QIIAEVGEASIQDYEDGMQACNEAAKIWMQVPAPKRGDIVRQIGDSLRTKLQQLGRLV SLEMGKILPEGIGEVQEIIDMCDFAVGLSRQLNGSVIPSERPNHMMLEMWNPLGIVGV ITAFNFPCAVLGWNACIALVCGNCIVWKGAPTTPLVTIAMTKLVAGVLEKNNLPGAIF TSFCGGAEIGEAIAKDRRIPLVSFTGSSTVGLKVQQTVNARFGKCLLELSGNNAIIVM DDADVQLAVRSVLFAAVGTAGQRCTTCRRLLLHESIYQRVLDQLLDVYKQVKIGDPLQ RGTLLGPLHTSSSRKNFEKGIEIIKSQGGKILTGGGLIESEGNFVQPTIVEISPNADV VKEELFAPVLYVMKFKTLNEAIEINNSVPQGLSSSIFTRKPEVIFKWIG" gene complement(21022491..21024002) /locus_tag="TCM_029159" /note="dbxref CacaoGD:Thecc1EG029159" mRNA complement(join(21022491..21023033,21023628..21023773, 21023888..21024002)) /locus_tag="TCM_029159" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016733001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037511t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16710.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12057t00001" CDS complement(21022540..21023022) /locus_tag="TCM_029159" /note="paralog of Thecc1EG037511t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27280.1" /db_xref="Phytozome:POPTR_0001s16710.1" /db_xref="TAIR:AT1G72510.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVZ6" /translation="MSATIISDPMVVSAAAPETQATAAKLVAQSEVEFAKCDCCGLTE ECTPAYIERVRERYQGKWICGLCAEAVKDEIIRSERLISTEEAMARHMNFCKKFVSSG PPPDPTVHLISAMRSILRRSLDSPRGLRSTPTSPTRKVGEIRGPGLTRSESCFPTLSG " mobile_element 21024912..21025652 /note="source:CACAO_on_E373_scaffold_1 2 728" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 21029777..21029839 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3869 3926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21029790..21029832) /note="source:CACAO_M_S_E6245_F266_scaffold_2 1078 1120" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21029927..21036613) /locus_tag="TCM_029160" /note="dbxref CacaoGD:Thecc1EG029160" mRNA complement(join(21029927..21031304,21031806..21031982, 21033522..21033640,21033772..21033874,21034090..21034362, 21034541..21034738,21035610..21035919,21036295..21036613)) /locus_tag="TCM_029160" /product="Mono-/di-acylglycerol lipase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021270t1" /inference="similar to AA sequence:frave:gene05278" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01254t00001" CDS complement(join(21030465..21031304,21031806..21031982, 21033522..21033640,21033772..21033874,21034090..21034362, 21034541..21034738,21035610..21035909)) /locus_tag="TCM_029160" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene05278; paralog of Thecc1EG021270t1" /codon_start=1 /product="Mono-/di-acylglycerol lipase isoform 1" /protein_id="EOY27281.1" /db_xref="TAIR:AT3G14075.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXV0" /translation="MATATMATAAGAAALLYYTLNRKLQTNKPGEDDNENGSDLSGTA PLGIERVSHRLIQAPATWLETISTLSETLRFTYSETLGKWPIGDLAFGINFLLKRQGH LHVASVFGGKDSIELKGSDITAELRYLLNLLTLCWHFSKKPFPLFLEETGYAEEDVLL QEPKAGILKPAFTILVDHKRKCFLLLIRGTHSIKDTLTAATGAVVPFHHSVVKEGGVS NLVLGYAHCGMVAAARWIAKLATPCLIKVLGQYPTYKVKIVGHSLGGGTGALLTYVLR EQKELSTTTCVTFAPAACMTWELAESGTDFITSVINGADLVPTFSAASVDDLRAEVTA SAWLNDLRNQIERTRILSTVYRSASALGSRLPSIASAKAKVAGAGAILRPVSNGTQVV MRRAQSMAQAAWTRPAINLSSWSCIGPRHRGTAARSNLKEEGSSQKISPNKAETSEPL LTSPQRNSSSSTIETIELPVSSSGVEWTSEIECSCSDDPHHDSDANLDDGEDLISHNS HEDHMDEVELWQQLEHELYNRTEGEEADVASQIREEEAAAIAEVGEGQPDSAVPETKE VHRFFPAGKIMHIITLQSDAVESEASTPASNDTDNGQRTMEAKIGIFLTPRSLYSKLR LSQTMISDHFMPIYRRQIEKLIKELEEEQAVSGQNHGGYTAEVVL" mRNA complement(join(<21030737..21031304,21031806..21031982, 21033522..21033640,21033772..21033874,21034541..21034738, 21035610..21035919,21036295..21036505)) /locus_tag="TCM_029160" /product="Mono-/di-acylglycerol lipase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06590.1" /inference="similar to AA sequence:frave:gene05278" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc594t3_C2; inference alignment:Newbler:10:TSA:cgbaP2_g01254t00001" CDS complement(join(<21030738..21031304,21031806..21031982, 21033522..21033640,21033772..21033874,21034541..21034738, 21035610..21035909)) /locus_tag="TCM_029160" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene05278" /codon_start=1 /product="Mono-/di-acylglycerol lipase isoform 2" /protein_id="EOY27282.1" /db_xref="TAIR:AT3G14075.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXV0" /translation="MATATMATAAGAAALLYYTLNRKLQTNKPGEDDNENGSDLSGTA PLGIERVSHRLIQAPATWLETISTLSETLRFTYSETLGKWPIGDLAFGINFLLKRQGH LHVASVFGGKDSIELKGSDITAELRYLLNLLTLCWHFSKKPFPLFLEETGYAEEDVLL QEPKAGIVGHSLGGGTGALLTYVLREQKELSTTTCVTFAPAACMTWELAESGTDFITS VINGADLVPTFSAASVDDLRAEVTASAWLNDLRNQIERTRILSTVYRSASALGSRLPS IASAKAKVAGAGAILRPVSNGTQVVMRRAQSMAQAAWTRPAINLSSWSCIGPRHRGTA ARSNLKEEGSSQKISPNKAETSEPLLTSPQRNSSSSTIETIELPVSSSGVEWTSEIEC SCSDDPHHDSDANLDDGEDLISHNSHEDHMDEVELWQQLEHELYNRTEGEEADVASQI REEEAAAIAEVGEGQPDSAVPETKEVHRFFPAGKIMHI" mobile_element 21032560..21033498 /note="source:CACAO_M_E49279_F74_scaffold_6 1004 1943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21036843..21036943 /note="source:CACAO_PIF_E119_scaffold_3 4535 4634" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 21040746..21040995 /note="source:scaffold_4_CACTA_0503 6786 7017" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21042306..21042418) /note="source:CACAO_PIF_E119_scaffold_3 4558 4669" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 21043598..21052073 /locus_tag="TCM_029161" /note="dbxref CacaoGD:Thecc1EG029161" mRNA join(21043598..21043852,21045169..21045831, 21046292..21046444,21046532..21046744,21046820..21046909, 21047045..21047161,21047722..21047991,21048143..21048299, 21048996..21049073,21049248..21049348,21049527..21049697, 21050379..21050453,21050743..21050850,21051204..21052073) /locus_tag="TCM_029161" /product="Inter-alpha-trypsin inhibitor heavy chain-related, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037505t1" /inference="similar to AA sequence:ricco:29158.m000193" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc884t4" CDS join(21045445..21045831,21046292..21046444, 21046532..21046744,21046820..21046909,21047045..21047161, 21047722..21047991,21048143..21048299,21048996..21049073, 21049248..21049348,21049527..21049697,21050379..21050453, 21050743..21050850,21051204..21051542) /locus_tag="TCM_029161" /note="dbxref ricco:29158.m000193; paralog of Thecc1EG037505t1" /codon_start=1 /product="Inter-alpha-trypsin inhibitor heavy chain-related, putative" /protein_id="EOY27283.1" /db_xref="TAIR:AT1G19110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IND3" /translation="MAGEFSTSVTCGIMLSKRLYYGRGASPAPPVMSRSLSSTESYRP TGVMAYAVVPEPAAVDNPDVPSYQPYVHGRCDPPALIPLHMHEVSMEVDCCMDTAFVT VRGAWRVHCIMSSRRCDCRIAIPMGEQGSILGVEVDVSGRSYNSKWVTLADSKDTEKV ARAGDGCFLTPHTYTFKIPQVDGGSNVSIKVSWSQKLSYQDGQFCLNVPFSFPAYVIP VGKKIPKREKIQLNVNSGTGTELVIKCTSHPLKELTREVRKLSFIYEAEVPAWSTSDL NFAYTVSSSDIFGGVLLQSPPLRDFDEREMFCFYLYPGNNQKTKVFRKEVVFVIDTSE SMQGRPIESVKNALLALLSKLNPQDSFNIIAFNSEIHLFSSTMVLATHGSILNATHWL SNNLTADGGTNMMLPLKQAMKLLSDASDSIPLIFLITDGSVEDEREICNVMKGYLSSG GSVSPRICTFGIGLYCNHYFLQMLAQIGRGHYDCTYDADNIELRMERLFTAATSVVLA NITMDMPGNLDSLELFPSYIPDLSFGSPLMVSGRYKGDFPDNIKVTGMLADMSTFVTD LKVQNAKDVPFDRMLTRRQIDIVTCHAWFSESQELEEKVAKISLQTSFPSEYTCLILL QTDSEKKVQESIRVQEIFKKINMPKKGDMNGQKLVFLGCMGVGFGNLTATAKNIPPGI EEPKSPEGAEILVRAASNCCSTLLDRCCCMCFIQACSYMNNQCSIVFTQLCTALACFE CVNCCYELCACV" mobile_element 21052343..21052547 /note="source:CACAO_Mariner_E38_scaffold_2 1304 1479" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 21052376..21052916 /note="source:CACAO_on_E169_scaffold_5 19 578" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(21053157..21063153) /locus_tag="TCM_029163" /note="dbxref CacaoGD:Thecc1EG029163" mRNA complement(join(21053157..21055419,21055632..21055752, 21058965..21059301,21062906..21063153)) /locus_tag="TCM_029163" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:GSVIVT01016757001" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage" CDS complement(join(21053267..21055419,21055632..21055644)) /locus_tag="TCM_029163" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27284.1" /db_xref="Phytozome:GSVIVT01016757001" /db_xref="TAIR:AT5G45470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXW1" /translation="MLLSIASGLLFSEASRWATDRSQLPSAGKDLWNKVELCSLVLLS LFLHIVLIGFGHGIKGKASRWVIPVGWLAYFLGDWVATASLSTLLKRQIEKINAIEVL WAPFLLLHLGNAETMAANYLEESALWVRYLVGLLIQFGMAFYVYWRFQTRHTGFNFLA TLIFIAGIIKCGERIWILSVSSFENYKKSVLRAPPPEISHTLEGKFDFPKHELLMDYL GREGVRPEAEYLHQAYLSFKMFVPLFSGLKLRFYKKLNDIFTLQKSMSAKEAFMLVDI ELEFLYDMLYTKTSILNSVTGLILLSISLLSCISGFIAFSVFISKRPYPRVDVAITYL LLVVAIIADTLALVTQLFSKWTVRQWTKPGGKKLPKCVDRVINRWLKHRKKGKGITSM AQSSLLKYCLKSKATTISTVANKLRLGNTVLEKSLHQLDQNWRRPDWIDVDLELKDFI FLHLKEKRTQYEQKQFDFKSLSCLLNGGAYELLHSKELHEEVGWSLKDLEFTHSLLIW HIATDILYYDQRRRYPRGSFSARCRISKHLSDYMLYLLVKAPFMLRKGIGELRYRDTC REAVKFLDQEMQIKGVRLAATTLLAIDAEWRGFLFQMKGQGKSVFFAGSALAKRLRWL SREDEKRMDEDEVWEIISCVWMEMLVSAANHCDWKDHTMQLRHGKELLTHVALLMAHL GLSKHIRMTDLPLQLEAEGDSYNPPWKWAELDRLAYYLA" mobile_element complement(21056880..21057441) /note="source:scaffold_4_CACTA_0482 16796 17324" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21058923..21061754 /note="source:scaffold_2_CACTA_0239 5017 7856" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21061764..21061839 /note="source:scaffold_2_CACTA_0239 7781 7856" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21061940..21062005 /note="source:scaffold_2_CACTA_0239 7787 7856" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21062748..21062803 /note="source:scaffold_2_CACTA_0239 8779 8835" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21062839..21063101 /note="source:scaffold_2_CACTA_0239 8830 9056" /mobile_element_type="transposon:TIR/CACTA" gene 21064616..21067346 /locus_tag="TCM_029165" /note="dbxref CacaoGD:Thecc1EG029165" mRNA join(21064616..21064750,21064955..21065033, 21065145..21065372,21065966..21066073,21066341..21066450, 21066685..21066768,21067317..21067346) /locus_tag="TCM_029165" /product="Nucleoside diphosphate kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016728001" /inference="similar to AA sequence:Phytozome:POPTR_0003s06610.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc789t10; alternateUTRof:Thecc1EG029165t1; inference alignment:Newbler:10:TSA:cgbaP1_g08798t00001" mRNA join(21064616..21064750,21064955..21065033, 21065145..21065372,21065966..21066073,21066177..21066218, 21066341..21066368) /locus_tag="TCM_029165" /product="Nucleoside diphosphate kinase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016728001" /inference="similar to AA sequence:Phytozome:POPTR_0003s06610.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc789t3; inference alignment:Newbler:10:TSA:cgbaP1_g08798t00001" mRNA join(21064715..21064750,21064955..21065033, 21065145..21065372,21065966..21066073,21066341..21066450, 21066685..21066768,21067129..21067271) /locus_tag="TCM_029165" /product="Nucleoside diphosphate kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016728001" /inference="similar to AA sequence:Phytozome:POPTR_0003s06610.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08798t00001" CDS join(21064969..21065033,21065145..21065372, 21065966..21066073,21066341..21066450,21066685..21066716) /locus_tag="TCM_029165" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Nucleoside diphosphate kinase family protein isoform 1" /protein_id="EOY27285.1" /db_xref="Phytozome:POPTR_0003s06610.2" /db_xref="TAIR:AT1G17410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C4V4" /translation="MKVCITQFLTRFLFFSVLIIFRCCSSNGSGEKERTLGIIKPDGL SGNYTDRIRKVILESGFHINKEMIIQLDEVNAADFYAEHSSKSFFTSLIKYMTSGPVL VMILEKEDAVAHWRHLIGPTDAGKAKITHPQSIRAMCGVDLEKNCVHGSDSHQSAQRE IAFFFKETPPDEAVRKHDEL" CDS join(21064969..21065033,21065145..21065372, 21065966..21066073,21066341..21066450,21066685..21066716) /locus_tag="TCM_029165" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Nucleoside diphosphate kinase family protein isoform 1" /protein_id="EOY27286.1" /db_xref="Phytozome:POPTR_0003s06610.2" /db_xref="TAIR:AT1G17410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C4V4" /translation="MKVCITQFLTRFLFFSVLIIFRCCSSNGSGEKERTLGIIKPDGL SGNYTDRIRKVILESGFHINKEMIIQLDEVNAADFYAEHSSKSFFTSLIKYMTSGPVL VMILEKEDAVAHWRHLIGPTDAGKAKITHPQSIRAMCGVDLEKNCVHGSDSHQSAQRE IAFFFKETPPDEAVRKHDEL" CDS join(21064969..21065033,21065145..21065372, 21065966..21066073,21066177..21066189) /locus_tag="TCM_029165" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Nucleoside diphosphate kinase family protein isoform 3" /protein_id="EOY27287.1" /db_xref="Phytozome:POPTR_0003s06610.2" /db_xref="TAIR:AT1G17410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C4V4" /translation="MKVCITQFLTRFLFFSVLIIFRCCSSNGSGEKERTLGIIKPDGL SGNYTDRIRKVILESGFHINKEMIIQLDEVNAADFYAEHSSKSFFTSLIKYMTSGPVL VMILEKEDAVAHWRHLIGPTDAGKAKITHPQRNKD" misc_feature join(21066425..21066450,21066685..21067743) /locus_tag="TCM_029165" /note="Gene fragment of Thecc1EG029165t1; dbxref gnl|CacaoGD|Thecc1EG029165t1; quality class is mediumpartial-partof is thecc1eg029165t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc784t10; dbxref CacaoGD:Thecc1EG029166t1" gene complement(21067275..21070836) /locus_tag="TCM_029167" /note="dbxref CacaoGD:Thecc1EG029167" mRNA complement(join(21067275..21068438,21068572..21070200, 21070726..21070836)) /locus_tag="TCM_029167" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene01939.5" /inference="similar to AA sequence:Phytozome:POPTR_0006s01400.1" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1371t1_C2" CDS complement(join(21068011..21068438,21068572..21070200, 21070726..21070741)) /locus_tag="TCM_029167" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27288.1" /db_xref="Phytozome:POPTR_0006s01400.1" /translation="MIRCGVVIAIILTEASRIAARATAHSWASPGVKESWSRVQLYVL VLLSLTLNVVLIALGYVIKNRRGKTSVALLTHAGYFVGDLAATAALITLLKRQSSGRV NALQVFWAPFLLSHLGSTETIAANFFDKKKLFRLYTLGLIIQIGIACYIFGRFEGGSD NTLARIAIPITISGIIKCLERLCILRFSRFQDFTISTLSGVPPNKFKPKPAGGQSEQL YEQLDDHLDRKSIIPEARHLHRAYLSFMMFMPLFSDINVRIYNTLSGIFSLNKDAKEA FNMVDFELNLLFDVLYTKTIMHHVLLGFILRFIYFFLSTGALLAFPYAYGHKQHHSSP EIIMTYMLLLGEFLADGTAVISHILSGWTMQWLTTPTNWGRLPRCVRPYIAYCMKFKM SMQGQGVNYMAQHSLLSYCLKAKVNKFNAAIKKLVDAKRILKVFWDIQKHAWVDVRPT WALVDPGLKELILSRLQKKRKKYDNGKFKFSCLSNLVQKGASDVLKDKGIEIYEELHW SLTKVEFTHSLLLWHIATDILFHYHKRRYPGSCGRNNNQINSQDLAQVAPTLLELDNI KFQAFFSVPEGGGEGGKSVFFKGCDLAKQLHSFTVDARWDPEELWEMISCVWLEMLFS AAYDCDWKEHAYQLGQGGELLTHVALLMAHLGLCKHLRMTKPPTDHKVCMPCWDWDHL TQMASYFA" mobile_element 21070850..21071689 /note="source:CACAO_Again_on_E12_scaffold_1 1 878" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(21071056..21072387) /note="source:CACAO_hAT_E1198_scaffold_3 4483 5538" /mobile_element_type="transposon:TIR/hAT" mobile_element 21071936..21072736 /note="source:CACAO_Again_on_E207_scaffold_9 308 1856" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(21073353..21073483) /note="source:CACAO_PIF_E54_scaffold_3 8902 9038" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 21074213..21086213 /locus_tag="TCM_029168" /note="dbxref CacaoGD:Thecc1EG029168" mRNA join(21074213..21074283,21083995..21084130, 21084258..21084330,21084989..21085536,21085627..21085798, 21085906..21085963,21086106..21086213) /locus_tag="TCM_029168" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037503t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06620.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1629t1_C1" mobile_element 21074547..21074621 /note="source:scaffold_5_CACTA_0610 7702 7784" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21075130..21080439 /note="source:INTACT68_F132_scaffold_6-int 1 5310" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(21084125..21084130,21084258..21084330, 21084989..21085536,21085627..21085798,21085906..21085925) /locus_tag="TCM_029168" /note="paralog of Thecc1EG037503t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27289.1" /db_xref="Phytozome:POPTR_0003s06620.1" /db_xref="TAIR:AT1G72490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N7E9" /translation="MKFFGWMQNKFNGKQGSSKPNTVSATRRMKQEPREEFSDWPHGL LAIGTFGNNDLKENPQCQNTIQQDHPSDIQEEPSSSEDLQEFTQEEVGKLQKELTKLL SRKPTSDVQKELANLPLDRFLNCPSSLEVDRRISNALCSDSGDREEDIDRTISVILGR CKDICAENKKKAIGKKSISFLLKKMFVCASGFSPAPSLSDTLQESRMEKLLRVMLHKK IYSQNPSRASSLKKYLEDKQTPKRQNNQDETRERKSEDGSKWVKTDSEYIVLEI" mobile_element complement(21087299..21087353) /note="source:scaffold_8_CACTA_0856 923 973" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21087302..21087362) /note="source:CACAO_M_E42514_F40_scaffold_5 115 174" /mobile_element_type="retrotransposon:LTR/Copia" gene 21087976..21091789 /locus_tag="TCM_029170" /note="dbxref CacaoGD:Thecc1EG029170" mRNA join(21087976..21088135,21088603..21088751, 21088834..21088881,21089612..21089680,21089770..21089885, 21089983..21090045,21091152..21091789) /locus_tag="TCM_029170" /product="Small nuclear ribonucleoprotein family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16680.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037502t1" /inference="similar to AA sequence:ricco:29158.m000196" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g10272t00001" mRNA join(21088724..21088751,21088834..21088881, 21089612..21089680,21089770..21089877,21090029..21090045, 21091152..21091692) /locus_tag="TCM_029170" /product="Small nuclear ribonucleoprotein family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16680.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037502t1" /inference="similar to AA sequence:Phytozome:Glyma07g04580.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc704t2_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc704t2_C2; inference alignment:Newbler:10:TSA:cgbaP1_g10272t00001" CDS join(21088739..21088751,21088834..21088881, 21089612..21089680,21089770..21089885,21089983..21090045, 21091152..21091229) /locus_tag="TCM_029170" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29158.m000196; paralog of Thecc1EG037502t1" /codon_start=1 /product="Small nuclear ribonucleoprotein family protein isoform 1" /protein_id="EOY27290.1" /db_xref="TAIR:AT3G14080.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XUX0" /translation="MPYLGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFA NAVLEGACDRVIVGDLYCDIPLGLYVIRGENVVLIGELDLEREELPPHMTCVSAAEIR RAQKAEREARDLKGTMRKRMEFLDLD" CDS join(21088739..21088751,21088834..21088881, 21089612..21089680,21089770..21089877,21090029..21090045, 21091152..21091229) /locus_tag="TCM_029170" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037502t1" /codon_start=1 /product="Small nuclear ribonucleoprotein family protein isoform 2" /protein_id="EOY27291.1" /db_xref="Phytozome:Glyma07g04580.1" /db_xref="TAIR:AT3G14080.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XUX0" /translation="MPYLGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFA NAVLEGACDRVIVGDLYCDIPLGLYVIRGENVVLIAAEIRRAQKAEREARDLKGTMRK RMEFLDLD" gene 21092171..21096500 /locus_tag="TCM_029171" /note="dbxref CacaoGD:Thecc1EG029171" mRNA join(21092171..21092596,21093096..21093949, 21095078..21095200,21095553..21095844) /locus_tag="TCM_029171" /product="Lung seven transmembrane receptor family protein isoform 4" /inference="alignment:exonerate-protein:2:frave:gene05283" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006419t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016725001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc165t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5163t1" mRNA join(21092171..21092596,21093096..21093950, 21095122..21095200,21095553..21095726) /locus_tag="TCM_029171" /product="Lung seven transmembrane receptor family protein isoform 5" /inference="alignment:exonerate-protein:2:frave:gene05283" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006419t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016725001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc138t11; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5163t1" mRNA join(21092231..21092596,21093096..21094014, 21094707..21094802,21095064..21095200,21095553..21096500) /locus_tag="TCM_029171" /product="Lung seven transmembrane receptor family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05283" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006419t1" /inference="similar to AA sequence:ricco:29158.m000197" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5163t1" mRNA join(21092248..21092596,21093096..21094014, 21094707..21094802,21095064..21095131,21095553..21096113) /locus_tag="TCM_029171" /product="Lung seven transmembrane receptor family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene05283" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006419t1" /inference="similar to AA sequence:ricco:29158.m000197" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc160t6_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5163t1" mRNA join(21092248..21092596,21093096..21094014, 21094707..21094800,21095099..>21095199) /locus_tag="TCM_029171" /product="Lung seven transmembrane receptor family protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene05283" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006419t1" /inference="similar to AA sequence:frave:gene05283" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc160t1_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5163t1" CDS join(21092388..21092596,21093096..21094014, 21094707..21094802,21095064..21095200,21095553..21095727) /locus_tag="TCM_029171" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29158.m000197; paralog of Thecc1EG006419t1" /codon_start=1 /product="Lung seven transmembrane receptor family protein isoform 1" /protein_id="EOY27292.1" /db_xref="TAIR:AT1G72480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9E6" /translation="MLKLQNSLFLLSLLCFFCVFIGDASVHEYNGEKFVSKGNAFVVH GGSEGIYSSFPDPHNVTAVGGDSYIRFEKISFRRPKEFANFSSQSIQAVVFEVEDRET IGGSAYGGQRAVCCTADLAKLGVCLEGEVIYRPSTENPTWPKVFGISFNGDEEVATLP SKSVQITKTGMYNLYFIHCDLNLRDLTVEGKTVWKNPTGYLPGRMAPLMNFYGFMSLA FVILGIFWFSQYARFWREVLPLQNCITLVITLGMLEMALWYFDYAEFNESGIRPVGIT MWAVTFGTIKRTIARIIILMVSMGYGVVRPTLGGLTSKVIMLGATFFLASEVLELVEN VGAVSDLSGKARLFLVLPVAILDAFFILWIFTSLSATLNKLQARRMVVKLDIYRKFTN ALAVAVIVSVGWICYELYFKSNDVYNEQWQNAWIIPAFWQVLSFSLLCVICVLWAPSQ NSMRYAYSDEANEDFDKDDTTLTLIQPSPTPSKDFRSAPEASPVQGGNRASNGDLEED KTE" CDS join(21092388..21092596,21093096..21094014, 21094707..21094802,21095064..21095131,21095553..21095727) /locus_tag="TCM_029171" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29158.m000197; paralog of Thecc1EG006419t1" /codon_start=1 /product="Lung seven transmembrane receptor family protein isoform 2" /protein_id="EOY27293.1" /db_xref="TAIR:AT1G72480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9E6" /translation="MLKLQNSLFLLSLLCFFCVFIGDASVHEYNGEKFVSKGNAFVVH GGSEGIYSSFPDPHNVTAVGGDSYIRFEKISFRRPKEFANFSSQSIQAVVFEVEDRET IGGSAYGGQRAVCCTADLAKLGVCLEGEVIYRPSTENPTWPKVFGISFNGDEEVATLP SKSVQITKTGMYNLYFIHCDLNLRDLTVEGKTVWKNPTGYLPGRMAPLMNFYGFMSLA FVILGIFWFSQYARFWREVLPLQNCITLVITLGMLEMALWYFDYAEFNESGIRPVGIT MWAVTFGTIKRTIARIIILMVSMGYGVVRPTLGGLTSKVIMLGATFFLASEVLELVEN VGAVSDLSGKARLFLVLPVAILDAFFILWIFTSLSATLNKLQARRMVVKLDIYRKFTN ALAVAVIVSVGWICYELYFKSNDVYNEQWQNAWIIPAFWYAYSDEANEDFDKDDTTLT LIQPSPTPSKDFRSAPEASPVQGGNRASNGDLEEDKTE" CDS join(21092388..21092596,21093096..21093949, 21095078..21095200,21095553..21095608) /locus_tag="TCM_029171" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG006419t1" /codon_start=1 /product="Lung seven transmembrane receptor family protein isoform 4" /protein_id="EOY27295.1" /db_xref="Phytozome:GSVIVT01016725001" /db_xref="TAIR:AT1G72480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9E6" /translation="MLKLQNSLFLLSLLCFFCVFIGDASVHEYNGEKFVSKGNAFVVH GGSEGIYSSFPDPHNVTAVGGDSYIRFEKISFRRPKEFANFSSQSIQAVVFEVEDRET IGGSAYGGQRAVCCTADLAKLGVCLEGEVIYRPSTENPTWPKVFGISFNGDEEVATLP SKSVQITKTGMYNLYFIHCDLNLRDLTVEGKTVWKNPTGYLPGRMAPLMNFYGFMSLA FVILGIFWFSQYARFWREVLPLQNCITLVITLGMLEMALWYFDYAEFNESGIRPVGIT MWAVTFGTIKRTIARIIILMVSMGYGVVRPTLGGLTSKVIMLGATFFLASEVLELVEN VGAVSDLSGKARLFLVLPVAKMMSTMSSGRMPGSSQPSGKSYLSLCYVSSVFFGHPLR IQCGMLTLMKQMKILTKMILL" CDS join(21092388..21092596,21093096..21093950, 21095122..21095200,21095553..21095567) /locus_tag="TCM_029171" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG006419t1" /codon_start=1 /product="Lung seven transmembrane receptor family protein isoform 5" /protein_id="EOY27296.1" /db_xref="Phytozome:GSVIVT01016725001" /db_xref="TAIR:AT1G72480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9E6" /translation="MLKLQNSLFLLSLLCFFCVFIGDASVHEYNGEKFVSKGNAFVVH GGSEGIYSSFPDPHNVTAVGGDSYIRFEKISFRRPKEFANFSSQSIQAVVFEVEDRET IGGSAYGGQRAVCCTADLAKLGVCLEGEVIYRPSTENPTWPKVFGISFNGDEEVATLP SKSVQITKTGMYNLYFIHCDLNLRDLTVEGKTVWKNPTGYLPGRMAPLMNFYGFMSLA FVILGIFWFSQYARFWREVLPLQNCITLVITLGMLEMALWYFDYAEFNESGIRPVGIT MWAVTFGTIKRTIARIIILMVSMGYGVVRPTLGGLTSKVIMLGATFFLASEVLELVEN VGAVSDLSGKARLFLVLPVAISLLASLIFLSAMCHLCSLGTLSEFNAVCLL" CDS join(21092388..21092596,21093096..21094014, 21094707..21094800,21095099..>21095199) /locus_tag="TCM_029171" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene05283; paralog of Thecc1EG006419t1" /codon_start=1 /product="Lung seven transmembrane receptor family protein isoform 3" /protein_id="EOY27294.1" /db_xref="TAIR:AT1G72480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9E6" /translation="MLKLQNSLFLLSLLCFFCVFIGDASVHEYNGEKFVSKGNAFVVH GGSEGIYSSFPDPHNVTAVGGDSYIRFEKISFRRPKEFANFSSQSIQAVVFEVEDRET IGGSAYGGQRAVCCTADLAKLGVCLEGEVIYRPSTENPTWPKVFGISFNGDEEVATLP SKSVQITKTGMYNLYFIHCDLNLRDLTVEGKTVWKNPTGYLPGRMAPLMNFYGFMSLA FVILGIFWFSQYARFWREVLPLQNCITLVITLGMLEMALWYFDYAEFNESGIRPVGIT MWAVTFGTIKRTIARIIILMVSMGYGVVRPTLGGLTSKVIMLGATFFLASEVLELVEN VGAVSDLSGKARLFLVLPVAILDAFFILWIFTSLSATLNKLQARRMVVKLDIYRKFTN ALAVAVIVSVGWICYGGRMPGSSQPSGKSYLSLCYVSSVFFGHPLRIQC" gene complement(21096502..21101946) /locus_tag="TCM_029172" /note="dbxref CacaoGD:Thecc1EG029172" mRNA complement(join(21096502..21096604,21098111..21100556, 21101849..21101946)) /locus_tag="TCM_029172" /product="Exocyst subunit exo70 family protein D2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014632t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16660.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage" CDS complement(21098122..21099984) /locus_tag="TCM_029172" /note="paralog of Thecc1EG014632t1" /codon_start=1 /product="Exocyst subunit exo70 family protein D2" /protein_id="EOY27297.1" /db_xref="Phytozome:POPTR_0001s16660.1" /db_xref="TAIR:AT1G72470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9E5" /translation="MEPPESSNKDSHGYELAEKIILRWDSTASEEARERMIFETDRQE ADLYLQAVDEIQRSLSNASISSSSNNAADDQSKVNTTIQIAMARLEDEFRNILITHTS ALETDSLFDPMSSSISTPSLHELEEDDSLSSHGNSSNNLLQFQHCESSDSSSYRFTSS IREVDLMPAEAISDLQAIAMRMISSGYLRECIQVYGSVRKTAVDSSFRKLGIEKLSIG DIQRLEWEALESKIRRWIRAAKDCVRILFASEKKLCEQIFECVGTDIDDACFMETVKG PAIQLFNFAEAISISRRSPEKLFKILDLHDALMDLLPDIEAVFNSKSSDSIRVQAAEI LSRLAEAARGILSEFENAVLREPSRVPVPGGTIHPLTRYVMNYISLISDYKQTLIELI MSKPSTGSRYSGDPSTPDMEFAELEGKTPLALHLIWIIVILQFNLDGKSKHYRDASLA HLFIMNNVHYIVQKVKGSPELREMIGDDYLRKLTGKFRQAATSYQRATWVRVLYCLRD EGLHVSGGFSSGVSKSALRERFKTFNVMFEEVHRTQATWLIPDAQLREELRISISEKL IPAYRSFLGRFRSHIESGKHPENYIKYSVEDLETAVLDFFEGNPVSQHLRRRSQ" gene complement(21101995..21105405) /locus_tag="TCM_029173" /note="dbxref CacaoGD:Thecc1EG029173" mRNA complement(join(21101995..21103571,21104002..21105405)) /locus_tag="TCM_029173" /product="Leucine-rich repeat protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29158.m000199" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037498t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16650.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5150t1" CDS complement(join(21102862..21103571,21104002..21105346)) /locus_tag="TCM_029173" /note="paralog of Thecc1EG037498t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative" /protein_id="EOY27298.1" /db_xref="Phytozome:POPTR_0001s16650.1" /db_xref="TAIR:AT3G42880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVY8" /translation="MAVAWLFRPFLLLSSFLVLLPLTFSVSDSEALLMLKKSFTNASA LDSWVPGSAPCNEEGTWNGLLCHNGIVTGLRLEGMGLSGNIDVDALVWIKGLRSFSVI NNSFTGTIPEINRLGALKALFLSRNLFSGEIPTEYFAKMESLKKVWLSHNKFTGNIPY SLGQLPHLIDVHLENNQFSGHIPAFNPPSLKSVNLSNNKLVGEIPSSLSKFNANSFAG NPGLCGEQVGVDCSKAIDRSPGPMSSPENTAPVVQDHGRKNDSKKIIAAIITLGVMLL SVILFFAIRWRKKKKGDSDVLGRGSPDGAVSVQVSVPARREMEESRKNASSSRRGSNH AKGSAGVVAELVMVNDEKGVFGLPDLMKAAAEVLGVGGLGSSYKAVMANGVAVVAKRM REMNALGKDAFDTDVRKLGKLRHPNILTPLAYHYRKDEKLFVYEYLPKGSLLYLLHGD HGTSCLELDWPARLKIVQGIAQGLDYLHTELASLDVPHGNLKSSNVLLGPDNHPFLSD YGFWPLVNTNGAQALFAYKTPEALQHGMVSPKSDVYCLGIIILEILTGKFPSQYLSDG KGGTDVVQWVTSAFSEGRQAELLDPEIACCQNSLASMEKLLHIGLLCTQNSPDQRLDM KEAIRMIEEIEVEGGIEFHSHARTIEVFPSLRDGIPDAANSNSSSFLEGKGEHATTGH GP" mobile_element complement(21107758..21112742) /note="source:INTACT566_F257_scaffold_7-int 484 5510" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21113336..21113564 /note="source:scaffold_5_CACTA_0612 12836 13059" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21116562..21117208 /note="source:CACAO_Helitron_E81_scaffold_3 2558 3196" /mobile_element_type="transposon:Helitron" mobile_element 21120203..21123745 /note="source:INTACT561_F253_scaffold_5-int 1387 4272" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21123774..21123784) /note="source:CACAO_M_S_E5464_F76_scaffold_1 252 390" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21123785..21123909) /note="source:CACAO_M_E57329_F88_scaffold_8 255 388" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21124331..21124404 /note="source:CACAO_on_SS_E42_scaffold_2 23381 23456" /mobile_element_type="transposon:TIR/Mutator" mobile_element 21124452..21124822 /note="source:CACAO_on_SS_E42_scaffold_2 24176 24540" /mobile_element_type="transposon:TIR/Mutator" gene 21127875..21130392 /locus_tag="TCM_029176" /note="dbxref CacaoGD:Thecc1EG029176" mRNA join(21127875..21128293,21128518..21128707, 21129030..21129328,21129439..21129496,21129891..21130327) /locus_tag="TCM_029176" /product="Jasmonate-zim-domain protein 6, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G72450.1" /inference="similar to AA sequence:ricco:29727.m000494" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16239t1" mRNA join(21127913..21128293,21128518..21128707, 21129030..21129328,21129439..21129496,21129896..21130215) /locus_tag="TCM_029176" /product="Jasmonate-zim-domain protein 6, putative isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT1G72450.1" /inference="similar to AA sequence:ricco:29727.m000494" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00675t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16239t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc32t10" CDS join(21128158..21128293,21128518..21128707, 21129030..21129328,21129439..21129496,21129891..21130029) /locus_tag="TCM_029176" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29727.m000494" /codon_start=1 /product="Jasmonate-zim-domain protein 6, putative isoform 1" /protein_id="EOY27299.1" /db_xref="TAIR:AT1G72450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXU5" /translation="MSNSGPKSGKATERASFVNLLSQYLKEKRNIGDISVGMTSKPEA KGLEASRQQAMPMNFFPNMDNPSDSSRPNLVASTSNVKPSDFFPEIANFGASSSKEDS TNKTDFRKPATVEPKSAQLTIFFGGQVLVYNDFPAEKVKEIMALASQGCSTACAGVVT DSGMEKVNSNMDKINSSNSDIPDLNIASTTGNSPDQDPSVERRQYGGSDLRIARRNSL HKFFEKRKDRAAARAPYQVNNQRGSPPPPKPDESKSSHEAGQSSKEASRDLDLKL" CDS join(21128158..21128293,21128518..21128707, 21129030..21129328,21129439..21129496,21129896..21129920) /locus_tag="TCM_029176" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29727.m000494" /codon_start=1 /product="Jasmonate-zim-domain protein 6, putative isoform 2" /protein_id="EOY27300.1" /db_xref="TAIR:AT1G72450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXU5" /translation="MSNSGPKSGKATERASFVNLLSQYLKEKRNIGDISVGMTSKPEA KGLEASRQQAMPMNFFPNMDNPSDSSRPNLVASTSNVKPSDFFPEIANFGASSSKEDS TNKTDFRKPATVEPKSAQLTIFFGGQVLVYNDFPAEKVKEIMALASQGCSTACAGVVT DSGMEKVNSNMDKINSSNSDIPDLNIASTTGNSPDQDPSVERRQYGGSDLRIARRNSL HKFFEKRKDSRKSTIPS" mRNA join(21128382..21128410,21128518..21128707, 21129030..21129328,21129439..21129496,21129891..21130392) /locus_tag="TCM_029176" /product="Jasmonate-zim-domain protein 6, putative isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT1G72450.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016721001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc32t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16239t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc32t10" CDS join(21128404..21128410,21128518..21128707, 21129030..21129328,21129439..21129496,21129891..21130029) /locus_tag="TCM_029176" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Jasmonate-zim-domain protein 6, putative isoform 3" /protein_id="EOY27301.1" /db_xref="Phytozome:GSVIVT01016721001" /db_xref="TAIR:AT1G72450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXU5" /translation="MIGLEASRQQAMPMNFFPNMDNPSDSSRPNLVASTSNVKPSDFF PEIANFGASSSKEDSTNKTDFRKPATVEPKSAQLTIFFGGQVLVYNDFPAEKVKEIMA LASQGCSTACAGVVTDSGMEKVNSNMDKINSSNSDIPDLNIASTTGNSPDQDPSVERR QYGGSDLRIARRNSLHKFFEKRKDRAAARAPYQVNNQRGSPPPPKPDESKSSHEAGQS SKEASRDLDLKL" mobile_element complement(21131760..21132457) /note="source:CACAO_on_E244_scaffold_9 387 1132" /mobile_element_type="transposon:TIR/Mutator" gene complement(21132346..21133762) /locus_tag="TCM_029177" /note="dbxref CacaoGD:Thecc1EG029177" mRNA complement(join(21132346..21132594,21133143..21133252, 21133387..21133450,21133516..21133762)) /locus_tag="TCM_029177" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage" CDS complement(join(21132563..21132594,21133143..21133252, 21133387..21133450,21133516..21133621)) /locus_tag="TCM_029177" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27302.1" /translation="MTCLTAEKRGISGLAMKVREGQGVKVKGGVVHPGTELVLVMLGK DGLISLTTGSHGRQQQFKVGVDALQLKLLYAILAASVCLLPDHANGIATRRLDINLNL I" mobile_element complement(21132565..21132611) /note="source:CACAO_on_E244_scaffold_9 343 389" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(21132616..21132717) /note="source:CACAO_on_E244_scaffold_9 1 103" /mobile_element_type="transposon:TIR/Mutator" gene 21135004..21140375 /locus_tag="TCM_029178" /note="dbxref CacaoGD:Thecc1EG029178" mRNA join(21135004..21135283,21136614..21136675, 21137043..21137145,21137299..21137375,21137451..21137512, 21137618..21137705,21137892..21137967,21138065..21138095, 21138474..21138593,21138773..21138858,21139272..21139448, 21139759..21140375) /locus_tag="TCM_029178" /product="RNA-binding family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016720001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037492t1" /inference="similar to AA sequence:Phytozome:Glyma07g04640.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05826t00001" CDS join(21135182..21135283,21136614..21136675, 21137043..21137145,21137299..21137375,21137451..21137512, 21137618..21137705,21137892..21137967,21138065..21138095, 21138474..21138593,21138773..21138858,21139272..21139448, 21139759..21140040) /locus_tag="TCM_029178" /note="paralog of Thecc1EG037492t1" /codon_start=1 /product="RNA-binding family protein" /protein_id="EOY27303.1" /db_xref="Phytozome:Glyma07g04640.1" /db_xref="TAIR:AT1G17370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LQI9" /translation="MQHQRLKQQQQALMQQALLQQQSLYHPGILAPPQIEPIPSGNLP PGFDPSTCRSVYVGNIHTQVTEPLLNEVFASTGPVEGCKLIRKEKSSYGFIHYFDRRS AALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDAMLFACFSV YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLSGKWLGSRQIRCNWATKGA GTNDDKQSSDAKSVVELTNGSSEDGKETTNSEAPENNPQYTTVYVGNLAPEVNQLELH RHFHALGAGVIEEVRIQRDKGFGFVRYSTHTEAALAIQMGNTQSFLCGKQIKCSWGSK PTPPGTSSTPLPPPAAAPLPGLSATDLLAYERQLAMSKMGVHALMHPQGQHPLKQAAM GVGAAGASQAIYDGGFQNVAAAQQLMYYQ" gene complement(21140564..21143609) /locus_tag="TCM_029180" /note="dbxref CacaoGD:Thecc1EG029180" mRNA complement(join(21140564..21141209,21141648..21141965, 21142471..21142633,21142979..21143011)) /locus_tag="TCM_029180" /product="FLU, putative isoform 4" /inference="alignment:exonerate- protein:2:TAIR:AT3G14110.2" /inference="similar to AA sequence:ricco:29727.m000491" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc839t4; inference alignment:Newbler:10:TSA:cgbaL_g00668t00001_C1; inference alignment:Newbler:10:TSA:cgbaP2_g00186t00001" mRNA complement(join(21140564..21141209,21141648..21141965, 21142471..21142648,21142979..21143011)) /locus_tag="TCM_029180" /product="FLU, putative isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT3G14110.2" /inference="similar to AA sequence:ricco:29727.m000491" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc839t1; inference alignment:Newbler:10:TSA:cgbaL_g00668t00001_C1; inference alignment:Newbler:10:TSA:cgbaP2_g00186t00001" mRNA complement(join(21140573..21141209,21141648..21141965, 21142471..21142633,21142987..21143189,21143506..21143609)) /locus_tag="TCM_029180" /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G14110.2" /inference="similar to AA sequence:ricco:29727.m000491" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00186t00001" mRNA complement(join(21140785..21141209,21141648..21141965, 21142471..21142648,21142987..21143189,21143506..21143598)) /locus_tag="TCM_029180" /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT3G14110.2" /inference="similar to AA sequence:ricco:29727.m000491" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00668t00002_C1; inference alignment:Newbler:10:TSA:cgbaP2_g00186t00001; inference alignment:Newbler:10:TSA:cgbaL_g00668t00001_C1" mRNA complement(join(21140925..21141209,21141648..21141965, 21142471..21142630,21142986..21143188)) /locus_tag="TCM_029180" /product="FLU, putative isoform 5" /inference="alignment:exonerate- protein:2:TAIR:AT3G14110.2" /inference="similar to AA sequence:ricco:29727.m000491" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc812t6; inference alignment:Newbler:10:TSA:cgbaP2_g00186t00001; inference alignment:Newbler:10:TSA:cgbaL_g00668t00001_C1" CDS complement(join(21141007..21141209,21141648..21141965, 21142471..21142633,21142987..21143189,21143506..21143590)) /locus_tag="TCM_029180" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29727.m000491" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /protein_id="EOY27304.1" /db_xref="TAIR:AT3G14110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ST79" /translation="MAVIIHCSCFLTRPCSVPSPSYAKPQFPGKVASFMCKVENFRPS FKDINGPVGLHHLLRERGKQSLLHCQKSEGNRVLDCISSDYDVFLQQLSALEGGLWSR VPVTAFLAANILIFTAPLKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGE LQRLNEQLRQINAALRRQAKIESYAPSLSYTPVGRISENEVIVDPRKEELISRLKTGK IFLRNQEPEKAFPEFKTALELAQSLKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV LAISEREGEDSGNTEAYGAIADCYTELGDLEKAGKFYDKYIARLETD" CDS complement(join(21141007..21141209,21141648..21141965, 21142471..21142648,21142987..21143189,21143506..21143590)) /locus_tag="TCM_029180" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29727.m000491" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /protein_id="EOY27305.1" /db_xref="TAIR:AT3G14110.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ST79" /translation="MAVIIHCSCFLTRPCSVPSPSYAKPQFPGKVASFMCKVENFRPS FKDINGPVGLHHLLRERGKQSLLHCQKSEGNRVLDCISSDYDVFLQQLSALELLLGQG GLWSRVPVTAFLAANILIFTAPLKALAETCEADNSFFNMPLLLFVALIGATVGGLLAR QRRGELQRLNEQLRQINAALRRQAKIESYAPSLSYTPVGRISENEVIVDPRKEELISR LKTGKIFLRNQEPEKAFPEFKTALELAQSLKDPIEEKKAARGLGASLQRQGKYREAIK YHSMVLAISEREGEDSGNTEAYGAIADCYTELGDLEKAGKFYDKYIARLETD" CDS complement(join(21141007..21141209,21141648..21141965, 21142471..21142630,21142986..21143129)) /locus_tag="TCM_029180" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29727.m000491" /codon_start=1 /product="FLU, putative isoform 5" /protein_id="EOY27308.1" /db_xref="TAIR:AT3G14110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ST79" /translation="MDQLGFIICCEKGVNSPYSIAKSQRETGSWIAFRQIMMYFCNSY LLLRGLWSRVPVTAFLAANILIFTAPLKALAETCEADNSFFNMPLLLFVALIGATVGG LLARQRRGELQRLNEQLRQINAALRRQAKIESYAPSLSYTPVGRISENEVIVDPRKEE LISRLKTGKIFLRNQEPEKAFPEFKTALELAQSLKDPIEEKKAARGLGASLQRQGKYR EAIKYHSMVLAISEREGEDSGNTEAYGAIADCYTELGDLEKAGKFYDKYIARLETD" CDS complement(join(21141007..21141209,21141648..21141965, 21142471..21142633,21142979..21142984)) /locus_tag="TCM_029180" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29727.m000491" /codon_start=1 /product="FLU, putative isoform 4" /protein_id="EOY27307.1" /db_xref="TAIR:AT3G14110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ST79" /translation="MMGGLWSRVPVTAFLAANILIFTAPLKALAETCEADNSFFNMPL LLFVALIGATVGGLLARQRRGELQRLNEQLRQINAALRRQAKIESYAPSLSYTPVGRI SENEVIVDPRKEELISRLKTGKIFLRNQEPEKAFPEFKTALELAQSLKDPIEEKKAAR GLGASLQRQGKYREAIKYHSMVLAISEREGEDSGNTEAYGAIADCYTELGDLEKAGKF YDKYIARLETD" CDS complement(join(21141007..21141209,21141648..21141965, 21142471..21142648,21142979..21142984)) /locus_tag="TCM_029180" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29727.m000491" /codon_start=1 /product="FLU, putative isoform 3" /protein_id="EOY27306.1" /db_xref="TAIR:AT3G14110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ST79" /translation="MMLLLGQGGLWSRVPVTAFLAANILIFTAPLKALAETCEADNSF FNMPLLLFVALIGATVGGLLARQRRGELQRLNEQLRQINAALRRQAKIESYAPSLSYT PVGRISENEVIVDPRKEELISRLKTGKIFLRNQEPEKAFPEFKTALELAQSLKDPIEE KKAARGLGASLQRQGKYREAIKYHSMVLAISEREGEDSGNTEAYGAIADCYTELGDLE KAGKFYDKYIARLETD" gene complement(21143739..21147485) /locus_tag="TCM_029181" /note="dbxref CacaoGD:Thecc1EG029181" mRNA complement(join(21143739..21144505,21144608..21146506, 21146927..21147485)) /locus_tag="TCM_029181" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s02480.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029186t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s02480.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1027t3" mRNA complement(join(21143747..21144505,21144608..21146496, 21146927..21147063)) /locus_tag="TCM_029181" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s02480.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029186t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s02480.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1064t1; alternateUTRof:Thecc1EG029181t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1027t3" CDS complement(join(21144305..21144505,21144608..21146467)) /locus_tag="TCM_029181" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029186t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27309.1" /db_xref="Phytozome:POPTR_0007s02480.1" /db_xref="TAIR:AT5G45470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HYV6" /translation="MKALVQILKELWKDWQLRGLVLFSLFFQTILIVMGNRRKYSYQL LVRFAVWVAYLAADTVATMALGIISKDLGDTSDNGEQDANIELHVFWTPFLLLHLGGP DTITAYSLEDNELWLRQLLGMALQTGVAFNIFLMAWRGSHLSILSTLMVFVGLSKYVE RTWVLRSASSEQIKGSMLARRDLPGLTNPNLLKEYNVKKEEGYICNTNRVIDIQLPME AFAIEDNSISKTNELLKAYGLLQIFKRIFVNLLLSSRDRDTSLVVFQNLSFQKAFEVV EMELAFMFDLLYTKASVVYSRWGLSLRCINLSLTCIVLVLFSLADDKHKYKKADLVIT FLLLVVAIVLDIYAALVILFSDWTVVWLSLLKKTSVLRAITSVRLFSNPRWSNSMAQY NLLSFALREKPMIYDPILSQVKPHLLHRILKLFKFLGFVEKQEKERYVTKEVISNSLK EWIFKYLKERLKAKATVYDTQEAGRQIFAVEIYGHGELKWSVEKGFDERILTWHIATD ICYYLEETIETTKSKREISILMSRYMLHLLVNYPSMLPAGLGDILIEDTCAEVIDFCN TPEPHKDKTDVYDKLVKAAVGLELLGTRYRAGKSMLSDGRGLARSLNEISNKEEKWSL IADTWVEMLAHAASHCEGSQHRQHLRRGGQLLTHVWLLMAHLGLTDHFQIPQPRDITR LTAK" CDS complement(join(21144305..21144505,21144608..21146467)) /locus_tag="TCM_029181" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029186t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27310.1" /db_xref="Phytozome:POPTR_0007s02480.1" /db_xref="TAIR:AT5G45470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HYV6" /translation="MKALVQILKELWKDWQLRGLVLFSLFFQTILIVMGNRRKYSYQL LVRFAVWVAYLAADTVATMALGIISKDLGDTSDNGEQDANIELHVFWTPFLLLHLGGP DTITAYSLEDNELWLRQLLGMALQTGVAFNIFLMAWRGSHLSILSTLMVFVGLSKYVE RTWVLRSASSEQIKGSMLARRDLPGLTNPNLLKEYNVKKEEGYICNTNRVIDIQLPME AFAIEDNSISKTNELLKAYGLLQIFKRIFVNLLLSSRDRDTSLVVFQNLSFQKAFEVV EMELAFMFDLLYTKASVVYSRWGLSLRCINLSLTCIVLVLFSLADDKHKYKKADLVIT FLLLVVAIVLDIYAALVILFSDWTVVWLSLLKKTSVLRAITSVRLFSNPRWSNSMAQY NLLSFALREKPMIYDPILSQVKPHLLHRILKLFKFLGFVEKQEKERYVTKEVISNSLK EWIFKYLKERLKAKATVYDTQEAGRQIFAVEIYGHGELKWSVEKGFDERILTWHIATD ICYYLEETIETTKSKREISILMSRYMLHLLVNYPSMLPAGLGDILIEDTCAEVIDFCN TPEPHKDKTDVYDKLVKAAVGLELLGTRYRAGKSMLSDGRGLARSLNEISNKEEKWSL IADTWVEMLAHAASHCEGSQHRQHLRRGGQLLTHVWLLMAHLGLTDHFQIPQPRDITR LTAK" mobile_element complement(21147201..21147415) /note="source:CACAO_M_S_E119817_F9_scaffold_9 1196 1400" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21147345..21148256 /note="source:CACAO_M_S_E66261_F9_scaffold_5 533 1441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21148531..21148893) /note="source:INTACT166_F161_scaffold_4-int 23 404" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21148903..21153588) /note="source:INTACT166_F161_scaffold_4-int 738 5475" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21153612..21154209) /note="source:INTACT166_F161_scaffold_4-int 23 653" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(21154216..21164526) /locus_tag="TCM_029183" /note="dbxref CacaoGD:Thecc1EG029183" mRNA complement(join(21154216..21154892,21155028..21157908, 21159663..21159856,21164352..21164526)) /locus_tag="TCM_029183" /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30131.m007232" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029187t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s02470.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1079t3" mRNA complement(join(21154863..21154886,21155028..21157527)) /locus_tag="TCM_029183" /product="NB-ARC domain-containing disease resistance protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30131.m007232" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029187t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s02470.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1034t2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1079t3" CDS complement(join(21154881..21154886,21155028..21157463)) /locus_tag="TCM_029183" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029187t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative isoform 2" /protein_id="EOY27312.1" /db_xref="Phytozome:POPTR_0007s02470.1" /db_xref="TAIR:AT1G58390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGE3" /translation="MDDAIDNFLVRKALQSRKPFTSFCNRVVFNKEMKQFISKTGDLI KDKQPLDIQDVTDNNIPGPSQHQRWARISDFCFDGESHVVGLEEQVKNLVALVVQGAE QGNQPAIVSMVGEGGSGKTAIARIVYNRVDIKRHFTSRAWVHVTKEFKVRDLLVDMIT QLDEKIAKEPLLEDELKWRLPKLLGQGRYLIVVDDVDAPEFWEAIKEVFPPFSHGGVV IVTTRKAGLAVPAGSTLQVRPLNDEESWALFLKKLDITEDRLHNSQLMKFKGQILKLC GGLPLAIVLMGGLLSAKELTDSEWSRVIEHVNAIEGILALSYHELPSYLKPCFLYMGL FPKAIEIPIRRLIHLWVAEGFVTSLSDGDMVEEDLAEMYFEELVCRKMIEVVRWRLDG SPKTCRLPSLVHDVFSLKARDIGFLQIHNTSFSANTSQLPVRRLATYSNIPFSKLHES HLRSYVSFNTLKGGIPAGNSSMFLDKIMSKGNLGVFRVLDLEGVYKPELPKAMGTLLN LRYLGLRSTVINSLPVSIGVLQCLETLDVKHTNITTLPDSFWKIRGLRHLYLNGICLD SLDVLSAETLNKLQSLCGLSISTESLVAETLSKFKCLRKLQLTFYIPRSIKIDWTSQL NKLHSLRIRSMRKSGESAPIKLTSFKEQHNLVNLYLFGSLLRPFKSTIFPPNLKSLTL SKTVLGKDPMLELGKLPQLNILRLFSFSYIGEEMTCVSGAFPQLHVLKLWQLGNFSNW LVEEGALPSLRELEIRDCRSLKTLDALYQLTSLRELILTNMPPDFADYVRGINSTGSA VFIKENHWEPSPPME" CDS complement(join(21154887..21154892,21155028..21157703)) /locus_tag="TCM_029183" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029187t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /protein_id="EOY27311.1" /db_xref="Phytozome:POPTR_0007s02470.1" /db_xref="TAIR:AT1G58390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGE3" /translation="MFFSMDAEVVVSLLSQKLQNLLHDEAIALTPKVKDQVQRTTHQL NLIRQLLKEADQKNRALTVEINSGKCTTRLLRALYSMDDAIDNFLVRKALQSRKPFTS FCNRVVFNKEMKQFISKTGDLIKDKQPLDIQDVTDNNIPGPSQHQRWARISDFCFDGE SHVVGLEEQVKNLVALVVQGAEQGNQPAIVSMVGEGGSGKTAIARIVYNRVDIKRHFT SRAWVHVTKEFKVRDLLVDMITQLDEKIAKEPLLEDELKWRLPKLLGQGRYLIVVDDV DAPEFWEAIKEVFPPFSHGGVVIVTTRKAGLAVPAGSTLQVRPLNDEESWALFLKKLD ITEDRLHNSQLMKFKGQILKLCGGLPLAIVLMGGLLSAKELTDSEWSRVIEHVNAIEG ILALSYHELPSYLKPCFLYMGLFPKAIEIPIRRLIHLWVAEGFVTSLSDGDMVEEDLA EMYFEELVCRKMIEVVRWRLDGSPKTCRLPSLVHDVFSLKARDIGFLQIHNTSFSANT SQLPVRRLATYSNIPFSKLHESHLRSYVSFNTLKGGIPAGNSSMFLDKIMSKGNLGVF RVLDLEGVYKPELPKAMGTLLNLRYLGLRSTVINSLPVSIGVLQCLETLDVKHTNITT LPDSFWKIRGLRHLYLNGICLDSLDVLSAETLNKLQSLCGLSISTESLVAETLSKFKC LRKLQLTFYIPRSIKIDWTSQLNKLHSLRIRSMRKSGESAPIKLTSFKEQHNLVNLYL FGSLLRPFKSTIFPPNLKSLTLSKTVLGKDPMLELGKLPQLNILRLFSFSYIGEEMTC VSGAFPQLHVLKLWQLGNFSNWLVEEGALPSLRELEIRDCRSLKTLDALYQLTSLREL ILTNMPPDFADYVRGINSTGSAVFIKENHWEPSPPML" mobile_element 21159754..21160026 /note="source:CACAO_M_S_E52697_F28_scaffold_5 7630 7898" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21160030..21162986 /note="source:CACAO_M_E49251_F33_scaffold_6 1 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21162987..21164343) /note="source:CACAO_M_S_E66639_F28_scaffold_5 4044 5401" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21164343..21166175) /note="source:scaffold_4_CACTA_0494 2176 4038" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21166287..21166849) /note="source:CACAO_M_S_E4591_F5_scaffold_1 17890 18457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21166824..21169938 /note="source:CACAO_M_S_E98983_F28_scaffold_8 2817 5946" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21169558..21170232) /locus_tag="TCM_029184" /note="dbxref CacaoGD:Thecc1EG029184" mRNA complement(join(21169558..21169755,21169854..21170232)) /locus_tag="TCM_029184" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008459t1" /note="quality class is strong-expresste, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.75 coverage" CDS complement(join(21169670..21169755,21169854..21170127)) /locus_tag="TCM_029184" /note="paralog of Thecc1EG008459t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27313.1" /translation="MINTLSDETRDALSTSQGEIGELIAHVNLLIIAAGNASANSGDR RKRAQVLEPKRYEGFKDAKELKEDKLVMVSMYLAENVKLWWCSKFINEVVTNKISAGV REELLYFNARYQGYDQK" mobile_element 21169928..21170877 /note="source:CACAO_M_S_E51369_F28_scaffold_4 4764 5720" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21174862..21178225) /locus_tag="TCM_029186" /note="dbxref CacaoGD:Thecc1EG029186" mRNA complement(join(21174862..21175588,21175691..21177579, 21178039..21178225)) /locus_tag="TCM_029186" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s02480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029181t2" /inference="similar to AA sequence:Phytozome:POPTR_0007s02480.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5185t1" CDS complement(join(21175388..21175588,21175691..21177550)) /locus_tag="TCM_029186" /note="paralog of Thecc1EG029181t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27314.1" /db_xref="Phytozome:POPTR_0007s02480.1" /db_xref="TAIR:AT5G45470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HYV6" /translation="MEALVQTLKELWKDWQLRGLVLFSLFFQTILIVVGNRRKYGYQL LVRFAVWVAYLAADTVATMALGIISNDLGDTSDNGEQDANIELHVFWSPFLLLHLGGP DTITAYSLEDNELWLRHLLGLALQTGVAFNIFLMAWRGSHLSILSTLMVFVGLSKYVE RTWVLRSASSEQIKGSMLARRDLPGLTNPNLLKEYNVKKEEGYICNTNRVIDIQLPME AFAIEDNSISKNNELLKAYGLLQIFKRIFVNLLLSSRDRDTSLAVFQNLSFQKAFEVV EMELAFMFDLLYTKASAVYSRWGLSLRCINLSLTCIVLVFFSLADDKHKYKKADLVIT FLLLVVAIVLDIYAALVILFSDWTVVWLSLRKKTSVLRAITSVRLFSNPRWSNSMAQY NLLSFALREKPMIYDPILSQVKPHLLHRILKLFKFLGFVEKQEKERYVTKEVISNSLK EWIFKYLKERLKAKATVYDTQDAGRQIFAVEIYGQGELKWSVEKGFDERILTWHIATD ICYYLEETIETTQSKREISILMSRYMLHLLVNYPSMLPAGLGDILIEDTCAEVIDFCN TPEPPKHKTDAYDRLVKATIGTELLGRRYRARKSLLSDGSRLARSLNEISNKEEKWSL IADTWVEMLAHAASHCEGIQHRQHLRRGGQLLTHVWLLMAHLGLTDHFQILQPRDITR LTAK" gene complement(21178408..21182381) /locus_tag="TCM_029187" /note="dbxref CacaoGD:Thecc1EG029187" mRNA complement(join(21178408..21179156,21179292..21182381)) /locus_tag="TCM_029187" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400051212.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029183t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s02470.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.20 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5193t1" CDS complement(join(21179151..21179156,21179292..21181955)) /locus_tag="TCM_029187" /note="paralog of Thecc1EG029183t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY27315.1" /db_xref="Phytozome:POPTR_0007s02470.1" /db_xref="TAIR:AT1G58390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGE3" /translation="MDAEVVVSLLSQKLQTLLHDEKIAMTPKVKDQVQRTTQQLNLFR QLLKEADQKNRALAVQMNSRKWTTRLLRALYSLDDAIDNFLVRKALQSRKPFTSFCDG VVFKKEMKLFISRTGDLIKNKQPLDIQDVTDNNIPGPSQHQRWARISDFCFDGESHVV GLEEQVKNLVALVVQGAKQGNQPAVVSMVGEGGSGKTAIARIVYNRVDIKRHFTSRAW VHVTKEFKVRDVLVDMITQLDEKIAKEPLLEDELKWRLPKLLGQGRYLIVVDDVDAPE FWEAIKEVFPPSSHGGVVIVTTRKAGLAVPAGSTLQVRPLNDEESWALFLKKLDITED RLHNSQLMKFKGQILKLCGGLPLAIVLMCGLLSAKELTDSEWSRVIEHVNAIEGILAL SYHELPSYLKPCFLYMGLFPKAIEIPIRRLIHLWVAEGFVTSLSDGDMVEEDLAEMYF EELVGRKMIEVVRWRLDGSPKTCRLPSLVHDVFSLKARDIGFLQIHSTSFSANTSQLP VRRLATYSNIPFSKLHVSHLRSYVSFNTLKGGIPAGNSSMFLDKIMSKGNLGVFRVLD LESVYKPELPKAMGTLLNLRYLGLRSTVINSLPISIGVLQCLETLDVKHTNITTLPDS FWKIRSLRHLYLNGICLDSLDVLSAETLNKLQSLCGLSISTESLVAETLSKCKCLRKL QLTFYIPSSIKIDWTSQLNKLHSLRIRSIRESGESASIKFTSFKEQHNLVNLYLFGSL LRPFKSTIFPPNLKSLTLSKTGLGKDPMLELGKLPQLNTLRLFNFSYVGEEMTCASGA FPQLHVLKLWQLDHFSKWLVEEGALPSLRELEIRDCRSLKTLDAFYQLSSLRELILTN MPPDFADYVRGIKSPGSAVFIKENHWEPSPPMM" gene 21185520..21199886 /locus_tag="TCM_029188" /note="dbxref CacaoGD:Thecc1EG029188" mRNA join(21185520..21185798,21186535..21186920, 21187891..21187960,21188506..21188621,21188855..21188886, 21189020..21189145,21190158..21190316,21190591..21190683, 21190771..21190938,21191297..21191395,21191572..21191807, 21191907..21191964,21192631..21192719,21192975..21193103, 21194098..21194220,21195212..21195310,21195407..21195595, 21195801..21195972,21196069..21196225,21196407..21196609, 21197237..>21197277) /locus_tag="TCM_029188" /product="Nuclear pore complex protein Nup107 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29727.m000490" /inference="similar to AA sequence:ricco:29727.m000490" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc560t11; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc560t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc553t9" CDS join(21185719..21185798,21186535..21186920, 21187891..21187960,21188506..21188621,21188855..21188886, 21189020..21189145,21190158..21190316,21190591..21190683, 21190771..21190938,21191297..21191395,21191572..21191807, 21191907..21191964,21192631..21192719,21192975..21193103, 21194098..21194220,21195212..21195310,21195407..21195595, 21195801..21195972,21196069..21196225,21196407..21196609, 21197237..>21197275) /locus_tag="TCM_029188" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29727.m000490" /codon_start=1 /product="Nuclear pore complex protein Nup107 isoform 2" /protein_id="EOY27317.1" /db_xref="TAIR:AT3G14120.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L748" /translation="MDVEMETSPSYFDPQDDFAREKFRRYGCRKRNSSSSISPRQESG VSKFSEAKLLYEGPIIHSPTNAALLLENIKQEAESFDTDYFEGTPAMTRSASKRRPLH DGHRIAETDDGVDSIRRLGSHALKACKIEEDLSADNGDTTFALFASLLDSALQGLIPI PDLILQFERSCRNVSESIRYGSNIRHRVVEDKLMRQKAQLLLDEAATWSLLWYLYGKV TDEPPEELLLSPSTSHIEAGRFVVNDHTAQLCLRIVQWLEGLASKALDLESKVRGSHV GTYLPNSGIWHHTQRFLKKGASAANTVHHLDFDAPTREHANQLPDDKKQDESLLEDVW TLLRAGRLEEACDLCRSAGQPWRSATICPFGGLDLFPSIEALLKNGKNRTLQAIELEG GIGHQWRLWKWASYCASERISEQNGGKYEIAVYAAQCSNLKHMLPICADWETACWAMA KSWLEIQVDLELARSQSGRMEQLKSYGDSIDGSPEGIDSTSQPGSGPENWPLQVLNQQ PRDLSALLRKLHSGEMVHEAVTRGCKEQQRQIEMNLMLGNIPHLLELIWSWIAPSEDD QSISRPRDPQMIRFGAHLVLVLRYLLADEMKDPFKEKLMTVGDRILHMYSMFLFSKHH EELVGIYASQLAHHRCIDLFVHMMELRLNSSVHVKYKIFLSAMEYLPFSQGDDLKGSF EEIIERILSRSRETKVGKYDESSDVAEQHRLQSLQKALVVQWLCFTPPSTIANVKDVS AKLLLQALIHSNILFREFALISMWRVPAMPIGAQELLSLLAEPLKQLSETPDTFQDYV SENLKEFQDWSEYYSCDATYRNWLKIELANADVSPVELSVEEKQRAIEAAKETLNLSL LLLLRKENPWLISVEEHVNDSTEPLFLELHATAMLCLPSGESMCPDATVCAALMSALY SSVTEEVVVERQLMVNVAISSRDSYSI" mRNA join(21185946..21186920,21187891..21187960, 21188506..21188619,21188853..21188886,21189020..21189145, 21190158..21190316,21190591..21190683,21190771..21190938, 21191297..21191395,21191572..21191807,21191907..21191964, 21192631..21192719,21192975..21193103,21194098..21194220, 21195212..21195310,21195407..21195595,21195801..21195972, 21196069..21196225,21196407..21196609,21197237..21197378, 21197665..21197825,21198329..21198445,21199228..21199886) /locus_tag="TCM_029188" /product="Nuclear pore complex protein Nup107 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29727.m000490" /inference="similar to AA sequence:ricco:29727.m000490" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc553t9; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc553t9" CDS join(21186725..21186920,21187891..21187960, 21188506..21188619,21188853..21188886,21189020..21189145, 21190158..21190316,21190591..21190683,21190771..21190938, 21191297..21191395,21191572..21191807,21191907..21191964, 21192631..21192719,21192975..21193103,21194098..21194220, 21195212..21195310,21195407..21195595,21195801..21195972, 21196069..21196225,21196407..21196609,21197237..21197378, 21197665..21197825,21198329..21198445,21199228..21199296) /locus_tag="TCM_029188" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29727.m000490" /codon_start=1 /product="Nuclear pore complex protein Nup107 isoform 1" /protein_id="EOY27316.1" /db_xref="TAIR:AT3G14120.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L748" /translation="MTRSASKRRPLHDGHRIAETDDGVDSIRRLGSHALKACKIEEDL SADNGDTTFALFASLLDSALQGLIPIPDLILQFERSCRNVSESIRYGSNIRHRVVEDK LMRQKAQLLLDEAATWSLLWYLYGKVTDEPPEELLLSPSTSHIEAGRFVVNDHTAQLC LRIVQWLEGLASKALDLESKVRGSHVGTYLPNSGIWHHTQRFLKKGASAANTVHHLDF DAPTREHANQLPDDKKQDESLLEDVWTLLRAGRLEEACDLCRSAGQPWRSATICPFGG LDLFPSIEALLKNGKNRTLQAIELEGGIGHQWRLWKWASYCASERISEQNGGKYEIAV YAAQCSNLKHMLPICADWETACWAMAKSWLEIQVDLELARSQSGRMEQLKSYGDSIDG SPEGIDSTSQPGSGPENWPLQVLNQQPRDLSALLRKLHSGEMVHEAVTRGCKEQQRQI EMNLMLGNIPHLLELIWSWIAPSEDDQSISRPRDPQMIRFGAHLVLVLRYLLADEMKD PFKEKLMTVGDRILHMYSMFLFSKHHEELVGIYASQLAHHRCIDLFVHMMELRLNSSV HVKYKIFLSAMEYLPFSQGDDLKGSFEEIIERILSRSRETKVGKYDESSDVAEQHRLQ SLQKALVVQWLCFTPPSTIANVKDVSAKLLLQALIHSNILFREFALISMWRVPAMPIG AQELLSLLAEPLKQLSETPDTFQDYVSENLKEFQDWSEYYSCDATYRNWLKIELANAD VSPVELSVEEKQRAIEAAKETLNLSLLLLLRKENPWLISVEEHVNDSTEPLFLELHAT AMLCLPSGESMCPDATVCAALMSALYSSVTEEVVVERQLMVNVAISSRDSYSIEVVLH CLAVEGDGIGSHILNDGGLLGAVMAAGFKGELLRFQAGVTMEISRLDAWFSSKDGSLE GPATYIVRGLCRRCCIPEVILRCMQVSVSLMESGNPPESHDWLIELVSSLETGFIHLF SQQQLQEFLLFEREYSICKMELQEELSS" gene complement(21199364..21199858) /locus_tag="TCM_029189" /note="dbxref CacaoGD:Thecc1EG029189" mRNA complement(join(21199364..21199390,21199476..21199571, 21199716..21199858)) /locus_tag="TCM_029189" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc504t13_C2" CDS complement(join(21199484..21199571,21199716..21199813)) /locus_tag="TCM_029189" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27318.1" /translation="MATALEKTGKEDITQIPLNVQRKLNYRSSDSFPSRLSRKLKVFL VSELSPTQIEEEAHITL" mobile_element 21200034..21200084 /note="source:CACAO_M_S_E52697_F28_scaffold_5 6060 6110" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21200040..21200088) /note="source:scaffold_3_CACTA_0382 1857 1905" /mobile_element_type="transposon:TIR/CACTA" gene 21200220..21209084 /locus_tag="TCM_029190" /note="dbxref CacaoGD:Thecc1EG029190" mRNA join(21200220..21200906,21201538..21201619, 21201721..21201785,21201907..21201987,21203049..21203129, 21203560..21203721,21203810..21203908,21203998..21205373, 21205687..21205907,21205999..21206156,21206848..21206886, 21206974..21209084) /locus_tag="TCM_029190" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29727.m000488" /inference="similar to AA sequence:ricco:29727.m000488" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5303t3" mRNA join(21200621..21200906,21201538..21201619, 21201721..21201785,21201907..21201987,21203049..21203132, 21203560..21203721,21203810..21203908,21203998..21205373, 21205687..21205907,21205999..21206156,21206848..21206886, 21206974..21209042) /locus_tag="TCM_029190" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29727.m000488" /inference="similar to AA sequence:ricco:29727.m000488" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5303t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5303t3" CDS join(21200778..21200906,21201538..21201619, 21201721..21201785,21201907..21201987,21203049..21203132, 21203560..21203721,21203810..21203908,21203998..21205373, 21205687..21205907,21205999..21206156,21206848..21206886, 21206974..21208605) /locus_tag="TCM_029190" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29727.m000488" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY27320.1" /db_xref="TAIR:AT1G72390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVQ5" /translation="MGVSFKISKTGNRFKPKPCLQSEVSVDDVSEKSKESSRPRKLQG DVIEGGERVGGVSQSIVSDERLRVPADHEISFTLNLYLDGYSIGKPPEKEALHQATVQ DAPKLHPYDRSSETLFSAIESGRLPGDILDDIPCKYVDGTLVCEVVRDYRKSAPQQVS TIPSMDGSPIINKVRLRMSLENVVKDIPLSSDNSWTYGELMEAESRILTALQPRLFLD PTPKLERLCTNPFPTTLNLASCSLRRKRLRHAPEVTVTSASKIHGKKVCTDRVPESSN GRLGEAGIISGSLMPQQVQENLTSQNNVSNNMLALRPKSFVQDSSVPALPMTSQSPRY QMGVVNARSMQDHGSSSFVNPSTASPAGQDMTISYADSINSGASLLGKRENPDGPMSP LSGLNKRNRLNAVGPDGIPQQQIGPHMDGLHGPDMTWKNMLLPQQAMARGIQYANVGM QKHPQQVFEGVVNQEAGAMPFAAGQQALRYGAKEEPFDPDKLDGSELNRESDTNHLDQ QQTRLQPRLPHGYVRPGFPQTPWNNINQHVEKDARKDEQFQKRKSVQSPRLSGGALPQ SPLSSKSGEFSSGSIGPHFGAVATTTALGASQKEKAAVNSVPAVGGTPSLTSSANDSM QRQHQAQVAAKRRSNSLPKTPAINAVGSPASVSNISVPLNASSPSVGTPPLADQSILE RFSKIEIVTMRYKLNRKKKKVDEYHIQKPSTHSPQQVSTCLNSVSINEDFKDSSTPLS KSLFGGSMNTYKTRILNFVQVDRVVQGNVVSVVPRVRTRMIMSEKPTDGTVAMFYGDI DDGDIPGAEDYISHFPMLPNTHLADLLAGQFCSLMLREGHHLVEDNVQAKPTCVLMAS SSQQNSAATFPNSSAVDMQHTMQQYADAVPGQATNEVAKPNSSNNISINSSPSALGNT RMLPPGNPQALQMSQGLLSGVSMPARPPQLDTQPALQPQPQPQPQQAQQQQAQQQQAS QQQQQQQHQQSQHALLQQQHQHFQRSPMMLASNPLSHSNAIGQNSNMQLGNQMVNKHS PLQLQMLQQQQQQQQQQQQHQQQQQPQQQRKLMMGLGTAVGMGNIGNNMVRLGGLGNA IGIGGARGIGGSGISAPMSPISGIGNMGQNPINLNPTSNITNAISQHLRPGPLTPAHA HAALISKLRMGRANMLGNPQSSIAGMSGARQLHPGSASLSMLGQNLNQANMNPMQRTA MGPMGPPKMMPGLNNLYMNQHQQQFQLQHQQQQQLQHQQQQQQQQHLQQLQHQQLQQQ QQQQLQQQQQQETTSPLQAVVSPSQVGSPSTMGIPQLNQQSQQQQAQQQTSPQQMNQR TPMSPQLSSGAIHAGNPEACPASPQLSSQTLGSVGSITNSPMELGVNKSNSVGNT" CDS join(21200778..21200906,21201538..21201619, 21201721..21201785,21201907..21201987,21203049..21203129, 21203560..21203721,21203810..21203908,21203998..21205373, 21205687..21205907,21205999..21206156,21206848..21206886, 21206974..21208605) /locus_tag="TCM_029190" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29727.m000488" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27319.1" /db_xref="TAIR:AT1G72390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVQ5" /translation="MGVSFKISKTGNRFKPKPCLQSEVSVDDVSEKSKESSRPRKLQG DVIEGGERVGGVSQSIVSDERLRVPADHEISFTLNLYLDGYSIGKPPEKEALHQATVQ DAPKLHPYDRSSETLFSAIESGRLPGDILDDIPCKYVDGTLVCEVRDYRKSAPQQVST IPSMDGSPIINKVRLRMSLENVVKDIPLSSDNSWTYGELMEAESRILTALQPRLFLDP TPKLERLCTNPFPTTLNLASCSLRRKRLRHAPEVTVTSASKIHGKKVCTDRVPESSNG RLGEAGIISGSLMPQQVQENLTSQNNVSNNMLALRPKSFVQDSSVPALPMTSQSPRYQ MGVVNARSMQDHGSSSFVNPSTASPAGQDMTISYADSINSGASLLGKRENPDGPMSPL SGLNKRNRLNAVGPDGIPQQQIGPHMDGLHGPDMTWKNMLLPQQAMARGIQYANVGMQ KHPQQVFEGVVNQEAGAMPFAAGQQALRYGAKEEPFDPDKLDGSELNRESDTNHLDQQ QTRLQPRLPHGYVRPGFPQTPWNNINQHVEKDARKDEQFQKRKSVQSPRLSGGALPQS PLSSKSGEFSSGSIGPHFGAVATTTALGASQKEKAAVNSVPAVGGTPSLTSSANDSMQ RQHQAQVAAKRRSNSLPKTPAINAVGSPASVSNISVPLNASSPSVGTPPLADQSILER FSKIEIVTMRYKLNRKKKKVDEYHIQKPSTHSPQQVSTCLNSVSINEDFKDSSTPLSK SLFGGSMNTYKTRILNFVQVDRVVQGNVVSVVPRVRTRMIMSEKPTDGTVAMFYGDID DGDIPGAEDYISHFPMLPNTHLADLLAGQFCSLMLREGHHLVEDNVQAKPTCVLMASS SQQNSAATFPNSSAVDMQHTMQQYADAVPGQATNEVAKPNSSNNISINSSPSALGNTR MLPPGNPQALQMSQGLLSGVSMPARPPQLDTQPALQPQPQPQPQQAQQQQAQQQQASQ QQQQQQHQQSQHALLQQQHQHFQRSPMMLASNPLSHSNAIGQNSNMQLGNQMVNKHSP LQLQMLQQQQQQQQQQQQHQQQQQPQQQRKLMMGLGTAVGMGNIGNNMVRLGGLGNAI GIGGARGIGGSGISAPMSPISGIGNMGQNPINLNPTSNITNAISQHLRPGPLTPAHAH AALISKLRMGRANMLGNPQSSIAGMSGARQLHPGSASLSMLGQNLNQANMNPMQRTAM GPMGPPKMMPGLNNLYMNQHQQQFQLQHQQQQQLQHQQQQQQQQHLQQLQHQQLQQQQ QQQLQQQQQQETTSPLQAVVSPSQVGSPSTMGIPQLNQQSQQQQAQQQTSPQQMNQRT PMSPQLSSGAIHAGNPEACPASPQLSSQTLGSVGSITNSPMELGVNKSNSVGNT" mRNA join(21201483..21201785,21201907..21201987, 21203049..21203129,21203560..21203721,21203810..21203908, 21203998..21205373,21205687..21205907,21205999..21206156, 21206848..21206886,21206974..>21208391) /locus_tag="TCM_029190" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29727.m000488" /inference="similar to AA sequence:ricco:29727.m000488" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc579t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5303t3" CDS join(21201678..21201785,21201907..21201987, 21203049..21203129,21203560..21203721,21203810..21203908, 21203998..21205373,21205687..21205907,21205999..21206156, 21206848..21206886,21206974..>21208389) /locus_tag="TCM_029190" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29727.m000488" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY27321.1" /db_xref="TAIR:AT1G72390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GVQ5" /translation="MFRFRMFWFFLVFADHEISFTLNLYLDGYSIGKPPEKEALHQAT VQDAPKLHPYDRSSETLFSAIESGRLPGDILDDIPCKYVDGTLVCEVRDYRKSAPQQV STIPSMDGSPIINKVRLRMSLENVVKDIPLSSDNSWTYGELMEAESRILTALQPRLFL DPTPKLERLCTNPFPTTLNLASCSLRRKRLRHAPEVTVTSASKIHGKKVCTDRVPESS NGRLGEAGIISGSLMPQQVQENLTSQNNVSNNMLALRPKSFVQDSSVPALPMTSQSPR YQMGVVNARSMQDHGSSSFVNPSTASPAGQDMTISYADSINSGASLLGKRENPDGPMS PLSGLNKRNRLNAVGPDGIPQQQIGPHMDGLHGPDMTWKNMLLPQQAMARGIQYANVG MQKHPQQVFEGVVNQEAGAMPFAAGQQALRYGAKEEPFDPDKLDGSELNRESDTNHLD QQQTRLQPRLPHGYVRPGFPQTPWNNINQHVEKDARKDEQFQKRKSVQSPRLSGGALP QSPLSSKSGEFSSGSIGPHFGAVATTTALGASQKEKAAVNSVPAVGGTPSLTSSANDS MQRQHQAQVAAKRRSNSLPKTPAINAVGSPASVSNISVPLNASSPSVGTPPLADQSIL ERFSKIEIVTMRYKLNRKKKKVDEYHIQKPSTHSPQQVSTCLNSVSINEDFKDSSTPL SKSLFGGSMNTYKTRILNFVQVDRVVQGNVVSVVPRVRTRMIMSEKPTDGTVAMFYGD IDDGDIPGAEDYISHFPMLPNTHLADLLAGQFCSLMLREGHHLVEDNVQAKPTCVLMA SSSQQNSAATFPNSSAVDMQHTMQQYADAVPGQATNEVAKPNSSNNISINSSPSALGN TRMLPPGNPQALQMSQGLLSGVSMPARPPQLDTQPALQPQPQPQPQQAQQQQAQQQQA SQQQQQQQHQQSQHALLQQQHQHFQRSPMMLASNPLSHSNAIGQNSNMQLGNQMVNKH SPLQLQMLQQQQQQQQQQQQHQQQQQPQQQRKLMMGLGTAVGMGNIGNNMVRLGGLGN AIGIGGARGIGGSGISAPMSPISGIGNMGQNPINLNPTSNITNAISQHLRPGPLTPAH AHAALISKLRMGRANMLGNPQSSIAGMSGARQLHPGSASLSMLGQNLNQANMNPMQRT AMGPMGPPKMMPGLNNLYMNQHQQQFQLQHQQQQQLQHQQQQQQQQHLQQLQHQQLQQ QQQQQLQQQQQQETTSPLQAVVSPSQVGSPSTMGIPQLNQQSQ" gene complement(21209310..21213821) /locus_tag="TCM_046841" /note="dbxref CacaoGD:Thecc1EG046841" mRNA complement(join(21209310..21209724,21209881..21209985, 21210584..21210684,21211307..21211376,21211669..21211731, 21212140..21212197,21212369..21212493,21212636..21212713, 21212790..21212836,21212914..21213038,21213120..21213267, 21213749..21213821)) /locus_tag="TCM_046841" /product="Aldolase-type TIM barrel family protein" /inference="alignment:exonerate- protein:2:ricco:29727.m000487" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046843t1" /inference="similar to AA sequence:ricco:29727.m000487" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07043t00001" CDS complement(join(21209545..21209724,21209881..21209985, 21210584..21210684,21211307..21211376,21211669..21211731, 21212140..21212197,21212369..21212493,21212636..21212713, 21212790..21212836,21212914..21213038,21213120..21213262)) /locus_tag="TCM_046841" /note="dbxref ricco:29727.m000487; paralog of Thecc1EG046843t1" /codon_start=1 /product="Aldolase-type TIM barrel family protein" /protein_id="EOY27322.1" /db_xref="TAIR:AT3G14130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXQ8" /translation="MAAEPVNVNEFQELARQALPKMYYDYYSGGAEDQHTLKENVEAF HRFTILPRVLVDASRIDLSTTVLGYKISAPIMIAPTAMHKLAHPEGEVATARAAAACN TIMILSYMSTCTVEEVASSCKAIRFFQLYVYKRRDITANLVQRAERCGYKAIVLTVDT PRLGRREADIKNKMVAPQLKNFKGLISTKVSSDDGSNLEAFANNTFDASLSWKDIGWL RSITNLPLLIKGVLTCEDAIKAVGVGVDGIVVSNHGGRQLDYSPATISVLEEVVHAVK GKVPVLFDGGIRRGTDVFKALALGAQAVLIGRPAVYGLAAKGEYGVKRVIEMLKDELE LTMALSGCPTVKDITRNHVRTKHEALHSML" mobile_element 21213771..21213904 /note="source:CACAO_M_E69306_F123_scaffold_9 4883 5019" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21213884..21214347 /note="source:INTACT1443F_F12_scaffold_9-int 9640 10162" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21215864..21220164) /locus_tag="TCM_046843" /note="dbxref CacaoGD:Thecc1EG046843" mRNA complement(join(21215864..21216071,21216369..21216473, 21216813..21216913,21217321..21217390,21217788..21217850, 21219029..21219106,21219227..21219273,21219349..21219473, 21219552..21219698,21219828..21219893,21220036..21220164)) /locus_tag="TCM_046843" /product="Aldolase-type TIM barrel family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29727.m000481.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046841t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016714001" /note="transcript variant 2; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00311t00003; inference alignment:Newbler:10:TSA:cgbaB_g00311t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16266t2" mRNA complement(join(21215864..21216071,21216369..21216473, 21216813..21216913,21217321..21217390,21217788..21217850, 21218550..21218607,21218769..21218893,21219029..21219106, 21219227..21219273,21219349..21219473,21219552..21219698, 21219828..21219893,21220036..21220164)) /locus_tag="TCM_046843" /product="Aldolase-type TIM barrel family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29727.m000481.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029192t1" /inference="similar to AA sequence:ricco:29727.m000481" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00311t00002; inference alignment:Newbler:10:TSA:cgbaB_g00311t00002" CDS complement(join(21215892..21216071,21216369..21216473, 21216813..21216913,21217321..21217390,21217788..21217850, 21219029..21219106,21219227..21219273,21219349..21219473, 21219552..21219694)) /locus_tag="TCM_046843" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046841t1" /codon_start=1 /product="Aldolase-type TIM barrel family protein isoform 2" /protein_id="EOY27324.1" /db_xref="Phytozome:GSVIVT01016714001" /db_xref="TAIR:AT3G14130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXQ8" /translation="MAAEPVNVNEFRELARRALPKMCYDFYSGGAEDQYTLKENEEAF GKIIILPRILRDVSGIDLSTTVLGYNISMPVMIAPTGMHKLANPAGEIATAKAASACK TIMVLSSASTCTLEEVAACCNAVRFFQLYDGGSGLEALARGTLDPSFCWEDIRWLKSI TNLPILIKGVLTHEDAIKALEVGVAGIIVSNHGARQLDYSPATISVLEEVVHAVGGKV PVFLDGGVRRGTDIFKAVALGAQAVLVGRPVLYGLAAKGEYGVRQVLEMLMDELEITM ALSGCSSVKEITRSHVRTKHEQLLSML" CDS complement(join(21215892..21216071,21216369..21216473, 21216813..21216913,21217321..21217390,21217788..21217850, 21218550..21218607,21218769..21218893,21219029..21219106, 21219227..21219273,21219349..21219473,21219552..21219694)) /locus_tag="TCM_046843" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29727.m000481; paralog of Thecc1EG029192t1" /codon_start=1 /product="Aldolase-type TIM barrel family protein isoform 1" /protein_id="EOY27323.1" /db_xref="TAIR:AT3G14130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXQ8" /translation="MAAEPVNVNEFRELARRALPKMCYDFYSGGAEDQYTLKENEEAF GKIIILPRILRDVSGIDLSTTVLGYNISMPVMIAPTGMHKLANPAGEIATAKAASACK TIMVLSSASTCTLEEVAACCNAVRFFQLYVYKRRDISAKLVQRAENNGYKAIVLTADS PRLGRREADIKNKLVVPQPKNLEGLLSTKSVSDGGSGLEALARGTLDPSFCWEDIRWL KSITNLPILIKGVLTHEDAIKALEVGVAGIIVSNHGARQLDYSPATISVLEEVVHAVG GKVPVFLDGGVRRGTDIFKAVALGAQAVLVGRPVLYGLAAKGEYGVRQVLEMLMDELE ITMALSGCSSVKEITRSHVRTKHEQLLSML" gene complement(21220147..21236579) /locus_tag="TCM_029192" /note="dbxref CacaoGD:Thecc1EG029192" mRNA complement(join(21220147..21221948,21222061..21222188, 21222273..21222371,21223048..21223159,21223357..21223408, 21223620..21223681,21223765..21223879,21224026..21224135, 21224255..21224450,21225843..21225973,21231074..21231140, 21232244..21232379,21232665..21232769,21232914..21233014, 21233331..21233400,21233916..21233978,21234425..21234482, 21234699..21234823,21234958..21235035,21235114..21235160, 21235235..21235359,21235442..21235587,21235710..21235768, 21236188..21236579)) /locus_tag="TCM_029192" /product="Aldolase-type TIM barrel family protein" /inference="alignment:exonerate- protein:2:ricco:29727.m000480" /inference="similar to AA sequence:ricco:29727.m000487" /note="quality class is strong, express is medium, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1084t2" CDS complement(join(21221033..21221948,21222061..21222188, 21222273..21222371,21223048..21223159,21223357..21223408, 21223620..21223681,21223765..21223879,21224026..21224135, 21224255..21224450,21225843..21225973,21231074..21231140, 21232244..21232379,21232665..21232769,21232914..21233014, 21233331..21233400,21233916..21233978,21234425..21234482, 21234699..21234823,21234958..21235035,21235114..21235160, 21235235..21235359,21235442..21235584)) /locus_tag="TCM_029192" /note="dbxref ricco:29727.m000487" /codon_start=1 /product="Aldolase-type TIM barrel family protein" /protein_id="EOY27325.1" /db_xref="TAIR:AT3G14130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXQ8" /translation="MAAEPVNVNGFRELARQALPKMYYDFFAGGAEDQYTLKENEEAF HRITIQPRVLLDVSSIDLSTTVLGYNISMPVMIAPTSRHKLANPSGEIATARAASACN TIMVLSISSTCTLEEVAACCNAVRFFQLYVYKRRDISAKLVQRAENNGYKAIVVTGDS PRHGRREADIKNKIIVPELKNLEGLLSTNIVTDGGSNLDALVNWTRDPSFCWEDIGWL KSITKLPILIKGVLTQEDAMKALEVGVDAIIVSNHGARQLDYSPPTISVLEEVVHAVD GKVPVFLDGGVRRGTDIFKAMALGAQAVLVGRPVIYGLAAKGEYGVRRVLEMLKDELE LAMSLSGCSSVKEITRMELDDHGKRQNYQNSYVKRLRQSVLMPSIEITPSDTDIGRLL RSMICSLPAASALCVIGSPLVASTCSSMAISDSDQESSKDYNEGFEEEDYSSNHGSDP DYDSGADRSYSIEEETRAKLQNFSIKKKSRAGVAKDFDLSIKKDPEEMEMNFPEVDDK SYEYVQKIVKAGKLEKLKVDQCKVYLKKNGLRLSGRKDMLIQRIKEHLEILNGGGEKK YPLSSFILNCKGDACTGDVVMFEQNVYEMFNIASRSASGPPCGTRIVAGRIVKESYGA AKQQHTFTIEVLWSKGEKPLPPLHPLLIKGRNLYRLKTLRQKWEDEGERQKALMEKHS RGSLARSDREVRILEKERREMLRANRIFKKDERNKTQSQLTSTTIEIRPQQLGSSSYS GIVAPQHQQSGLNVVAEKLTSQTHGSGSVFDLEKPPIMSQQSGFLAEPQQLANQSKQS GLSVTPREKRIQLPEQSGFSPNFKAKSFQSEYKNVHVPQQLANQPKQSGLSVAPREKR IQLPEQSGFSPNFKARSFQSEYKNVHVWEGYQNQIPRYSVQSSGIPEVQLQKGDKFHI DYRKTNFHMNKYQNSINDKSRRSGMSKLLETSYHRHQLKSMNNCHPETPPQRRGFLSQ QPCRYHAQGRCYYGENCKFLHETRELHGAEERRFWRYGHY" mobile_element 21229533..21229789 /note="source:CACAO_M_E12105_F316_scaffold_3 5271 5511" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21229563..21229816 /note="source:INTACT402_F76_scaffold_5-int 1152 1407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21229593..21229907 /note="source:CACAO_PIF_E119_scaffold_3 2271 2605" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(21241588..21241679) /note="source:scaffold_4_CACTA_0493 2054 2131" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21241609..21241792 /note="source:CACAO_M_E4396_F76_scaffold_2 5509 5676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21241634..21241901 /note="source:CACAO_PIF_E119_scaffold_3 2308 2605" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 21241849..21241909 /note="source:CACAO_M_E57329_F88_scaffold_8 5465 5526" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21241910..21243971) /note="source:CACAO_M_S_E4911_F76_scaffold_1 13859 15985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21244036..21244623 /note="source:scaffold_1_CACTA_0008 953 1531" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21244627..21245789 /note="source:CACAO_M_S_E119572_F76_scaffold_9 2450 3606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21245734..21246449 /note="source:INTACT459_F220_scaffold_4-int 6895 7529" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21247120..21247750 /note="source:INTACT459_F220_scaffold_4-int 7427 8064" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21247263..21247975) /note="source:scaffold_4_CACTA_0493 2055 2827" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21247673..21248094) /note="source:CACAO_M_E35271_F316_scaffold_5 33 495" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21247896..21248241 /note="source:CACAO_PIF_E119_scaffold_3 2271 2629" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 21248187..21248251 /note="source:CACAO_M_E42343_F106_scaffold_5 6706 6769" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21248359..21250998 /note="source:CACAO_on_E617_scaffold_6 1 2640" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 21249631..21257285 /locus_tag="TCM_029193" /note="dbxref CacaoGD:Thecc1EG029193" mRNA join(21249631..21249804,21250261..21250297, 21251213..21251420,21253228..21253400,21253487..21253690, 21254773..21254883,21255015..21255110,21255301..21255346, 21255450..21255529,21255643..21255711,21255829..21255913, 21256178..21256332,21256409..21256489,21256572..21256631, 21256907..21257285) /locus_tag="TCM_029193" /product="Fatty acid biosynthesis 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01015032001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037480t6" /inference="similar to AA sequence:Phytozome:GSVIVT01016710001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1878t2" CDS join(21250295..21250297,21251213..21251420, 21253228..21253400,21253487..21253690,21254773..21254883, 21255015..21255110,21255301..21255346,21255450..21255529, 21255643..21255711,21255829..21255913,21256178..21256332, 21256409..21256489,21256572..21256631,21256907..21257023) /locus_tag="TCM_029193" /note="paralog of Thecc1EG037480t6" /codon_start=1 /product="Fatty acid biosynthesis 1" /protein_id="EOY27326.1" /db_xref="Phytozome:GSVIVT01016710001" /db_xref="TAIR:AT1G74960.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9P4" /translation="MWWYVVLPKYFVGTGAFKINPMHSCSFLKEYYSLPGPISSLFLP CNNGLQHFQAKMASSTSARQRHIKRVGKTMAVTVQHASRPRVVVTGLGLVTPLGHEPD VFYNNLLDGVSGISEIENFDCSQFPTKIAGEIKSFSIDGWVSPKLAKKADKYTLYLLT AAKKALADGGITDEVDGDYDKKKRGIIIGSSLGGFHLFQETIETMRESIKKIKPFSLP IGISNMGPAILAMELGWMGPNYALSAACATSNFCILSAAGLITRGETDMMLCGGSDAA VVQIALGGFTACRSLSRRNSDPEKASRPWDIDRDGFVIGEGAGVLLLEELEHAKRRGA KIYAEFLGGSFTSDAYHITDPHPDGTGMNLCIKKALDQAGVAKEDVNYINAFASSTQK GDQREYQTLMDHFGQNPQLRINSSKSMIGHLQGASGAVEAIATIKAIETGWIHPNINL DNPDEGLDTNILVGPKKEQLDIKLALSNSFGYGGQNSSILFAPIK" mobile_element complement(21251769..21252912) /note="source:scaffold_5_CACTA_0614 1509 2647" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21254126..21254353 /note="source:CACAO_on_SS_E42_scaffold_2 24149 24474" /mobile_element_type="transposon:TIR/Mutator" gene complement(21257233..21260238) /locus_tag="TCM_029194" /note="dbxref CacaoGD:Thecc1EG029194" mRNA complement(join(21257233..21257780,21257919..21258373, 21258458..21258702,21258818..21258919,21259000..21259070, 21259192..21259698,21260165..21260238)) /locus_tag="TCM_029194" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041956t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" CDS complement(join(21257619..21257780,21257919..21258373, 21258458..21258702,21258818..21258919,21259000..21259070, 21259192..21259692)) /locus_tag="TCM_029194" /note="paralog of Thecc1EG041956t1; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27327.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BMR0" /translation="MPKVFWAEVVNTANYILNMAYTRVLSNKTACEMWHEHKPSVSHM KTFGSVYCAKIPAEKRSTFDPKPVLAIFIGYSDLSRSYKLYNVKSEKVFINKDVKFDE RLSWNWDNEIVENSGDVFLGVDEQLQGDNYELTNLEDENLAVKGTRSLEDIYNKCNLA MTDPTSFWIYRTKLNLDGSINKYKARLAVNESINWGGLENIPFGCQVSRSKWNLKEKI YIAQPEGYERIDDYFKGQGLNRSITEPTFYVKSSNESAELVVALYVDDLLITRPDTEY LQEFKAQMMSIFEITGLGLMSYFLKMEVQKNTPLTAGNKFSKNDGSAKADGSIYRSIV GSLLYLSATKPDIRYATCLLSRVIQTPSLVHFTAAKRILRYVKGMIVFGLLYLKKDSG ELQGFSDNDWARSVDDSKSTGSFCFLLGSAVFTRASKKQEIVAQSSAEAEYIAIALAA IHTKWLRKDAIKDQEIELRYCQTDDQLADIFTIGLGKERFELLRAGLGIYQVPNQGGV LKG" mobile_element 21260841..21263015 /note="source:INTACT36_F116_scaffold_6-int 1 2207" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21263016..21264154) /note="source:CACAO_M_E1841_F5_scaffold_1 24667 25802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21264135..21265338) /note="source:CACAO_M_E1841_F5_scaffold_1 23278 24291" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21265483..21265601) /note="source:scaffold_9_CACTA_0927 8028 8144" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21266042..21268220 /note="source:INTACT36_F116_scaffold_6-int 5086 7266" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21268226..21268770 /note="source:INTACT687_F13_scaffold_3-int 1294 1833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21268772..21269304 /note="source:CACAO_M_E49258_F19_scaffold_6 1 533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21269305..21269510 /note="source:INTACT687_F13_scaffold_3-int 1848 2053" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21269948..21270990) /locus_tag="TCM_029197" /note="dbxref CacaoGD:Thecc1EG029197" mRNA complement(21269948..21270990) /locus_tag="TCM_029197" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS complement(21270264..21270857) /locus_tag="TCM_029197" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27328.1" /translation="MHLKNTLTNTRRDGRFVAKYLQIMKGIVDQLAFVGAAVEDDDLV LHILNGLALHSTYKDLAAATRAPETSIAFEELHNKLVEFEQQVRKEESSGDCFILPQQ TSPRKTTTLITLSPFQIVADLFNIMVVIKIIMGTKNLVSSPQASILINRIFSTKSMRN IGTPLGSAIKAKNFPILIQRQMMHVLLIKSRHSPRLL" gene 21271385..21275281 /locus_tag="TCM_029198" /note="dbxref CacaoGD:Thecc1EG029198" mRNA join(21271385..21271788,21271880..21272085, 21272179..21272382,21272942..21273052,21273162..21273257, 21273434..21273479,21273570..21273649,21273788..21273856, 21273974..21274058,21274297..21274451,21274544..21274624, 21274763..21274822,21275026..21275281) /locus_tag="TCM_029198" /product="Fatty acid biosynthesis 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01015032001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037480t6" /inference="similar to AA sequence:Phytozome:GSVIVT01016710001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc342t4" CDS join(21271620..21271788,21271880..21272085, 21272179..21272382,21272942..21273052,21273162..21273257, 21273434..21273479,21273570..21273649,21273788..21273856, 21273974..21274058,21274297..21274451,21274544..21274624, 21274763..21274822,21275026..21275142) /locus_tag="TCM_029198" /note="paralog of Thecc1EG037480t6" /codon_start=1 /product="Fatty acid biosynthesis 1" /protein_id="EOY27329.1" /db_xref="Phytozome:GSVIVT01016710001" /db_xref="TAIR:AT1G74960.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C9P4" /translation="MAASILASSLCTGLVASYTPRPNRKNHPERSPMFQPPKKQNQGL TPKKLSSESCGRSETMAISVQPENKLTTEEKPPGQKRRVVVTGIGIVTALGHDPDMFY NNLLQGISGVSEIENFDSSQLPTNIGGEIKYFSADSGVSSKLAKRADKFMLYLLTAGK KALADGGITNEVNRELNKSRCGIIIGTALGGLRICQEWIETMMTPSKMPNPFSLPLTA TNMGSATLAMDLGWMGPNYVISAACATSNNCILSAAGHIIEGETDIMLCGGSDAGLHP IGLGGMASCRVLSRRNCDPTKASRPWDTERDGIVVGDGAGVLLMEELEHAKQRGAKVY AEFLGGSFGADAYHLTQPHPTGNGMVLCIEKALADAGVAREDVNYVNAHAASTQIGDL REFRALFRCFGNNPELRINSTKSMTGHLLGATGAVEAIAAIKAIQTGWIHPNINLDNP DKGVDINLIVGPTKERLDVKVALSNSFAFGGQNSCILFAPYK" gene complement(21275423..21279663) /locus_tag="TCM_029199" /note="dbxref CacaoGD:Thecc1EG029199" mRNA complement(join(21275423..21276001,21276617..21276693, 21277596..21277742,21277853..21278013,21278605..21278856, 21279414..21279663)) /locus_tag="TCM_029199" /product="Synaptobrevin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016709001" /inference="similar to AA sequence:Phytozome:GSVIVT01016709001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b028239t1a2; alternateUTRof:Thecc1EG029199t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5293t1" mRNA complement(join(21275874..21276001,21276617..21276693, 21277596..21277742,21277853..21278013,21278605..21278832, 21279414..21279628)) /locus_tag="TCM_029199" /product="Synaptobrevin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016709001" /inference="similar to AA sequence:Phytozome:GSVIVT01016709001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5293t1" CDS complement(join(21275918..21276001,21276617..21276693, 21277596..21277742,21277853..21278013,21278605..21278792)) /locus_tag="TCM_029199" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Synaptobrevin family protein isoform 1" /protein_id="EOY27330.1" /db_xref="Phytozome:GSVIVT01016709001" /db_xref="TAIR:AT1G11890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94AU2" /translation="MVKMTMIARVTDGLPLAEGLDDGRDLKDAEMYKQQVKALFKNLS KGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLRNEFERVNGA HIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGV GEKLDQVSQMSSRLTSESRIYADKARDLNRQALIRKWAPVAVVLGVVFLLFWVKAKLW " CDS complement(join(21275918..21276001,21276617..21276693, 21277596..21277742,21277853..21278013,21278605..21278792)) /locus_tag="TCM_029199" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Synaptobrevin family protein isoform 1" /protein_id="EOY27331.1" /db_xref="Phytozome:GSVIVT01016709001" /db_xref="TAIR:AT1G11890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94AU2" /translation="MVKMTMIARVTDGLPLAEGLDDGRDLKDAEMYKQQVKALFKNLS KGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLRNEFERVNGA HIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGV GEKLDQVSQMSSRLTSESRIYADKARDLNRQALIRKWAPVAVVLGVVFLLFWVKAKLW " mobile_element complement(21279895..21284363) /note="source:CACAO_M_E33977_F20_scaffold_4 11974 16536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21281276..21290426 /note="source:CACAO_Mutator_E1410_scaffold_6 1 9151" /mobile_element_type="transposon:TIR/Mutator" gene 21285215..21286041 /locus_tag="TCM_029202" /note="dbxref CacaoGD:Thecc1EG029202" mRNA 21285215..21286041 /locus_tag="TCM_029202" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006372t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage" CDS 21285252..21285791 /locus_tag="TCM_029202" /note="paralog of Thecc1EG006372t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27332.1" /translation="MLHTEFSTEDARAKMQISDELQGYVEGERPTYAKKREDVDFILA PCNVGGHWVVAKINLVRWTIKVVDSARTLDAKDNGVRASQMTPLTIMMPFICHHVGYF NNICRKRRDLTSMPLVIHLPKAKVHRQNDSVSCGMFMIEYIEHILQSEKIEIKQNMIT KMCRQYALKIFSNNCESEP" mobile_element 21290345..21291181 /note="source:scaffold_1_CACTA_0009 13254 13832" /mobile_element_type="transposon:TIR/CACTA" gene 21292669..21295716 /locus_tag="TCM_029204" /note="dbxref CacaoGD:Thecc1EG029204" mRNA join(21292669..21292978,21293415..21294083, 21294245..21294589,21294803..21295041) /locus_tag="TCM_029204" /product="2-oxoglutarate-dependent dioxygenase family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016708001" /inference="similar to AA sequence:Phytozome:GSVIVT01016708001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc441t1_C2; inference alignment:Newbler:10:TSA:cgbaB_g05193t00001" mRNA join(21292719..21292978,21293415..21294083, 21294245..21294589,21295015..21295716) /locus_tag="TCM_029204" /product="2-oxoglutarate-dependent dioxygenase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016708001" /inference="similar to AA sequence:Phytozome:POPTR_0003s06770.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05193t00001; inference alignment:Newbler:10:TSA:cgbaB_g05193t00001" CDS join(21292883..21292978,21293415..21294083, 21294245..21294589,21295015..21295290) /locus_tag="TCM_029204" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="2-oxoglutarate-dependent dioxygenase family protein, putative isoform 1" /protein_id="EOY27333.1" /db_xref="Phytozome:POPTR_0003s06770.1" /db_xref="TAIR:AT3G14160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LJH2" /translation="MNRGRGRTTNGYSGRGGRSWRSGGYFDHGRSPVGAERHSGEDSC YYQDDGMSQSRGRHLQKMSPASGSSYSKHDSTAAFGYKPKKPFPDGTGLKWQNDPPQA SDTSGAVLKDDFPSLSCQLDSKGSQPYAGRTQVEPLPVEETENCASVLHHDFSRRVNF SCLQDESEPSESSQKMSPQNSAGFGDSVHTECQVVVDPFDICLSKAGTPVMLKPSLLV KNREKRNEIKRSMEGQNGIVLRSGMVLLKKYLSLSDQVKIVKACRELGFGSGGFYQPG YRDGAKLHLKMMCLGKNWDPETGNYEDLRPIDCAVPPHIPREFYLLVEKAIKDSHALL QQKAIASHVEDILPWMSPNICIVNFYSASGRLGLHQDRDESPESLHKRLPVVSFSIGD SAEFLYGDQRDVDKAEKVELESGDVLIFGGNSRHIFHGVTAIKQNTAPRALVDETNLR PGRLNLTFREY" CDS join(21292883..21292978,21293415..21294083, 21294245..21294589,21294803..21294829) /locus_tag="TCM_029204" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="2-oxoglutarate-dependent dioxygenase family protein, putative isoform 2" /protein_id="EOY27334.1" /db_xref="Phytozome:GSVIVT01016708001" /db_xref="TAIR:AT3G14160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LJH2" /translation="MNRGRGRTTNGYSGRGGRSWRSGGYFDHGRSPVGAERHSGEDSC YYQDDGMSQSRGRHLQKMSPASGSSYSKHDSTAAFGYKPKKPFPDGTGLKWQNDPPQA SDTSGAVLKDDFPSLSCQLDSKGSQPYAGRTQVEPLPVEETENCASVLHHDFSRRVNF SCLQDESEPSESSQKMSPQNSAGFGDSVHTECQVVVDPFDICLSKAGTPVMLKPSLLV KNREKRNEIKRSMEGQNGIVLRSGMVLLKKYLSLSDQVKIVKACRELGFGSGGFYQPG YRDGAKLHLKMMCLGKNWDPETGNYEDLRPIDCAVPPHIPREFYLLVEKAIKDSHALL QQKAIASHVEDILPWMSPNICIVNFYSASGRLGLHQFDDQRMDI" gene complement(21296652..21299388) /locus_tag="TCM_029205" /note="dbxref CacaoGD:Thecc1EG029205" mRNA complement(join(21296652..21297557,21297681..21297772, 21298078..21298314,21298480..21299388)) /locus_tag="TCM_029205" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016707001" /inference="similar to AA sequence:Phytozome:GSVIVT01016707001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11585t00001" CDS complement(join(21296951..21297557,21297681..21297772, 21298078..21298314,21298480..21299118)) /locus_tag="TCM_029205" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27335.1" /db_xref="Phytozome:GSVIVT01016707001" /db_xref="TAIR:AT3G14170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NKR8" /translation="MASLTPGVLLKLLQSINSNVKVRGEYRSVLLQVISIVPALTGSE LWPNQGFFIKVSDSSHSTYVSLSQEDNELILNNKLQLGQFFYVERVEAGTPVPVLVGV RPVPGRNAFIGNPKDLMQMLVPSEGPVAVDNEGNNGSKGKELVEAKDESPRQKIVIKE EKAVVASRYMQGVLPSNPKASGPDSNSCLKSTENENGAAGKKAKSKQQEPKGQARPAT PSRSRPEVPLSKPEAVASNTKETMVPQKGTTVRRSLSKLENMNSNCLPNNKEKNNLPE TNSWNSLPASLLKPGKGMLRRRNLASLVAADAQREASMATNLVKCLSMFSDLCYSASP ENPQLSLTKFFTLQKLIDQPSVTAHLKDKTFQLSILPSGQDTEKSNKRKGLTHEKSAL KSPKPSMQLGGAEKLGWAKGDGAREIKELREILLHETRTWFLKFLEVALEVGFRSQEK KGKSATGRVMEQDNHIAVTLSQLKYANEWLDKLRSNLNSDNNGLMETVERLKQKVYAC LLSHVDSAASALENRS" gene complement(21299798..21307886) /locus_tag="TCM_029206" /note="dbxref CacaoGD:Thecc1EG029206" mRNA complement(join(21299798..21300855,21301005..21302933, 21303070..21303293,21303405..21303721,21303940..21304235, 21304334..21304498,21304658..21304833,21304917..21304971, 21305146..21306983,21307749..21307886)) /locus_tag="TCM_029206" /product="Multidrug/pheromone exporter, MDR family, ABC transporter family" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400013095" /inference="similar to AA sequence:Phytozome:POPTR_0001s16560.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.16 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc6927t1" CDS complement(join(21300508..21300855,21301005..21302933, 21303070..21303293,21303405..21303721,21303940..21304235, 21304334..21304498,21304658..21304833,21304917..21304971, 21305146..21306513)) /locus_tag="TCM_029206" /codon_start=1 /product="Multidrug/pheromone exporter, MDR family, ABC transporter family" /protein_id="EOY27336.1" /db_xref="Phytozome:POPTR_0001s16560.1" /db_xref="TAIR:AT3G28860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N7G1" /translation="MADSSFEIDFSSSLNYHQCHNTPASRYASSSFSPLHSSRISRTT PRRLQHRTPATPFATDDDMSWQSDVSWQFEPSGWRDSRNLGAALSPWAASSTSSSNSQ AFRRRSASEYYLSRTSGGFRSFANSYYEFSGHRAVPSGRLELQSYVARDNDSSSHLHL GDHSKSHHKLSRLATIKEGSSRNGASPLANENELSTIDYDTLEDVERQIRQLEIDPNS HTNVGSHWFTVSQAYVDDEDDVSLGGHHYGHGLSHQGSDGHGGRHKVDNDLDLAMQYE LHGHGQPTSHHDGGGHRYDDLGLSLDFNEDDNAEHGYGHGLSHHGVNSGLGGHHQIRH KLEGLDHKLHQVHHGHDTWQSASHQYGDDHEYDDFVPAPDINEDDNDEEEEDAEPPRP VGLLKLFKYSTKWDIVLVILGCLGALINGGSLPWYSYFFGDFVNKIATESSKGNKIQM MKDVEKICILMSGLATIVVVGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDISFFDT EVSTGDIMHGISTEVAQIQEVMGDKMAHFIHHVFTFICGYTVGFLRSWKVSLVVFSVT PLTMFCGIAYKAVYGGLTAKEEACYRKAGTIAEQAISSIRTVFSFVAEDNLAARYAEL LAKSVPLGAKIGFAKGAGMGVIYLVTYSTWALAFWYGSILVARKEISGGAAVACFFGV NVGGRGLALSLTYFAQFAQGTVAAGRIFDIMDRVPEIDPYDPEGRTLSSVRGRIEFKG VNFAYPSRPDTTVLSSLNLVIRSLKTLALVGASGGGKSTIFALIERFYDPDKGVITLD GHDLRTLQVKWLRRQIGMVGQEPVLFATTILENVMMGKENATKKEAVAACVAANAHSF IYDLPLGYDTQVGAKGTQLSGGQKQRIALARALIKDPRILLLDEPTSALDPESEAVVQ QAIDKISTGRTTIVIAHRLATVRNANTIVVLDQGSVVETGNHRQLMERSGAYYKLVKL ASEALSNPTLNEKNTQKSIEFSTYDKSAYEGSRSPCAYEISSSKYIKSIQEANQVEEE IQQRLKPGEFQISKIWTLQRPEVVTLLLGFLLGLHAGAILSIFPLLLGLALQAYFDDS TSKLKREVAKLSLALVGLGFGCIIAMTGQQGFCGWAGTKLTIRVRDLLFRSILKQEPG WFDFEDNSTGILVSRLSVDCLSFRAVLGDRYSVLLMGVSSAAVGLGVSFYFGWRLTLL AAALTPFTLGASYLNLIINIGPRLDNSSYAKASNIASGAVSNIRTVTTFSAQEEIVKS FDKALSEPRKQSVKRSQILGLTLGLSQGAMYGAYTLTLWFGAYLVKQGKTDFGDVYII FLILVLSSFSVGQLAGLAPDTTMAPTTIPAVFDIINRRPLIGNFRDKGRKIERSKPLD IELKMVTFAYPSRPEVIVLKDFCLKVKDGSMVALVGPSGSGKSTVIWLVQRFYDPNEG KVMMGGIDLVEINLKWLRKQIALVGQEPALFAGSIRENIAFGNQNATWGEIEDAAKEA YIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSRVLLLDEASSALDLES EKHVQDALRRVSKQATTIIIAHRLSTIREANMIAVVKDGAVVEYGSHDALLASHLDGV YAGLVRAEREANAFS" gene complement(21308017..21321503) /locus_tag="TCM_029207" /note="dbxref CacaoGD:Thecc1EG029207" mRNA complement(join(21308017..21309069,21309552..21309635, 21310373..21311802,21311944..21314091,21315949..21316101, 21316690..21316732,21319679..21319709,21319808..21319907, 21319994..21320176,21320260..21320357,21321127..21321503)) /locus_tag="TCM_029207" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene05399" /inference="similar to AA sequence:Phytozome:GSVIVT01016705001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:PASA:2:TSA:puevd3b028247t1a3; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc475t13" mRNA complement(join(21308017..21309069,21309552..21309635, 21310373..21311786,21311937..21314091,21315949..21316101, 21316690..21316732,21319679..21319709,21319808..21319907, 21319994..21320176,21320260..21320464,21321127..21321500)) /locus_tag="TCM_029207" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05399" /inference="similar to AA sequence:Phytozome:GSVIVT01016705001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc475t13" mRNA complement(join(21308061..21309069,21310373..21311786, 21311937..21314091,21315949..21316101,21316690..21316732, 21319679..21319709,21319808..21319907,21319994..21320176, 21320260..21320464,21321127..21321247)) /locus_tag="TCM_029207" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate-protein:2:frave:gene05399" /inference="similar to AA sequence:Phytozome:GSVIVT01016705001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc493t10; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc475t13" mRNA complement(join(21308481..21309071,21309552..21309635, 21310373..21311786,21311937..21314091,21315949..21316101, 21316690..21316732,21319679..21319709,21319808..21319907, 21319994..21320176,21320260..21320351,21321127..21321503)) /locus_tag="TCM_029207" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate-protein:2:frave:gene05399" /inference="similar to AA sequence:Phytozome:GSVIVT01016705001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5329t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc475t13" mRNA complement(join(21308481..21309069,21309552..21309635, 21310373..21311786,21311937..21314091,21315949..21316101, 21316690..21316732,21319679..21319709,21319808..21319907, 21319994..21320176,21320260..21320357,21321127..21321503)) /locus_tag="TCM_029207" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05399" /inference="similar to AA sequence:Phytozome:GSVIVT01016705001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5329t3; alternateUTRof:Thecc1EG029207t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc475t13" CDS complement(join(21308959..21309071,21309552..21309635, 21310373..21311786,21311937..21314091,21315949..21316101, 21316690..21316732,21319679..21319709,21319808..21319907, 21319994..21320176,21320260..21320318)) /locus_tag="TCM_029207" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY27341.1" /db_xref="Phytozome:GSVIVT01016705001" /db_xref="TAIR:AT3G14172.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXQ6" /translation="MKSDTLLDYAVFQLSPKRSRCELFVSSNGNTEKLASGLVKPFVT HLKVAEEQVALSIQSIKLEIEKRKNAETWFTKGTLERFVRFVSTPEVLELVNTFDAEM SQLEAAQRIYSQGVGDQPSGALGGDGAGMTAAADATKKELLRAIDVRLITVQQDLATA FARASAAGFNSDTVSELQQFADRFGAHRLHEACTKFISLCQRRPELISPWKPGVDDQV VRASWGSDMSIDDPNEDQIGSHVNSRSHQPPQNKHQEQQLQPNATQTQHHIDQSKPAI SQQPKPSITTQQRSQNENKEEEKKDEGVTESSPSQVSQPARRLSVQDRINLFENKQKE SSSSGGKPIAVGKSVELRRLSSEVSSAPAVVEKAVLRRWSGASDMSIDLGNDKKDGST DSPLCTPSSSSASQGKSNVFQGLSEDKEQKDEKGLSDKVSSVKVEPKSGSGRDADSGL KDHGEVQVQVGNSLGKEEDVGLKGRMNLKDQLGSQYNQYHQSFTSKSEQLELGDQVVS QEKVKGSLTGERGGSEVQSRVFPDKAVIVGVKNQPTSQAQVGVADTVGDAMSEGELKN RVEAQGEDQSTMHLRLRAQGHSRTLSGQFEGSIGLKTKEAQYIGTEGDQLTPQPRWRA FTGEVEELGKKDVASSEKQISKVEDSGAQKMKFKKQLPVGPEQSKKSLGRRDDSGSLY VNNKSVLGKKVPESEESFSAPKMQEPTQRIRQTRGNQELNDELKMKANELEKLFAEHK LRVPGDQFSSVRRSKPADVLIEQEASSQYKKPVAVDVSPAQMPDKNSVSEPMGSLSNM AKFCTPLTKMVESQECADTLTQNLSGISFSDDSRGRFYERYMQKRDAKLREEWGSKRA EKEAKLKAMQDILERSRAEMKAKFSGSADRQDSVSSARRRAEKVRSFNFQSQHPISSI QSEEDEDLSEFSDQKYYGQDRSFNEVSLPDGSSRSSNTKKLLPNRNVSLSTPRTMAAA VPRSAAKVANASSGRRRAQSENPLVQSVPNFSDLRKENTKPSSGAAKMTSRSQVRNYA RTKSTNEEIALGKDDQPRRSQSLRKSSAGPVEFSDLSALNSDGIVLAPLKFDKEQMEQ SFSDKFLQNVETKTFLRKGNGIGPGAGVNIAKFKASEASVTPKEEGESDELAFEADDS MDMAKEDEEDELESMVVEDSADMENGRSRLSQESDKLDNSGSENGDCLRSLSQVDPAS VAELPAAVPTTFHTAVSLQDSPEESPVSWNSRLHHPFSYPHETSDIDASMDSPIGSPA SWNSHSLAQTEVDAARMRKKWGSAQKPFLVANATHNQSRRDVTKGFKRLLKFGRKSRG TDSLVDWISATTSEGDDDTEDGRDPANRSSEDLRKSRMGFSQGHPSDDGFNESELFND QIQSLHSSIPAPPANFKLREDHMSGSSIKEHHDHSFHSHHFEARVVTPSLDKFRLRKV QDKLLESS" mRNA complement(join(21308976..21309635,21310373..21311786, 21311937..21314091,21315949..21316101,21316690..21316732, 21319679..21319709,21319808..21319907,21319994..21320176, 21320260..21320357,21321127..21321245)) /locus_tag="TCM_029207" /product="Uncharacterized protein isoform 6" /inference="alignment:exonerate-protein:2:frave:gene05399" /inference="similar to AA sequence:Phytozome:GSVIVT01016705001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc475t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc475t13" CDS complement(join(21309005..21309069,21309552..21309635, 21310373..21311802,21311944..21314091,21315949..21316101, 21316690..21316732,21319679..21319709,21319808..21319907, 21319994..21320176,21320260..21320318)) /locus_tag="TCM_029207" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY27339.1" /db_xref="Phytozome:GSVIVT01016705001" /db_xref="TAIR:AT3G14172.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXQ6" /translation="MKSDTLLDYAVFQLSPKRSRCELFVSSNGNTEKLASGLVKPFVT HLKVAEEQVALSIQSIKLEIEKRKNAETWFTKGTLERFVRFVSTPEVLELVNTFDAEM SQLEAAQRIYSQGVGDQPSGALGGDGAGMTAAADATKKELLRAIDVRLITVQQDLATA FARASAAGFNSDTVSELQQFADRFGAHRLHEACTKFISLCQRRPELISPWKPGVDDQV VRASWGSDMSIDDPNEDQIGSHVNSRSHQPPQNKHQEQQLQPNATQTQHHIDQSKPAI SQQPKPSITTQQRSQNENKEEEKKDEGVTESSPSQVSQPARRLSVQDRINLFENKQKE SSSSGGKPIAVGKSVELRRLSSEVSSAPAVVEKAVLRRWSGASDMSIDLGNDKKDGST DSPLCTPSSSSASQGKSNVFQGLSEDKEQKDEKGLSDKVSSVKVEPKSGSGRDADSGL KDHGEVQVQVGNSLGKEEDVGLKGRMNLKDQLGSQYNQYHQSFTSKSEQLELGDQVVS QEKVKGSLTGERGGSEVQSRVFPDKAVIVGVKNQPTSQAQVGVADTVGDAMSEGELKN RVEAQGEDQSTMHLRLRAQGHSRTLSGQFEGSIGLKTKEAQYIGTEGDQLTPQPRWRA FTGEVEELGKKDVASSEKQISKVEDSGAQKMKFKKQLPVGPEQSKKSLGRRDDSGSLY VNNKSVLGKKVPESEESFSAPKMQEPTQRIRQTRGNQELNDELKMKANELEKLFAEHK LRVPGDQFSSVRRSKPADVLIEQEASSQYKKPVAVDVSPAQMPDKNSVSEPMGSLSNM AKFCTPLTKMVESQECADTLTQNLSGISFSDDSRGRFYERYMQKRDAKLREEWGSKRA EKEAKLKAMQDILERSRAEMKAKFSGSADRQDSVSSARRRAEKVRSFNFQLCIWQHPI SSIQSEEDEDLSEFSDQKYYGQDRSFNEVSLPDGSSRSSNTKKLLPNRNVSLSTPRTM AAAVPRSAAKVANASSGRRRAQSENPLVQSVPNFSDLRKENTKPSSGAAKMTSRSQVR NYARTKSTNEEIALGKDDQPRRSQSLRKSSAGPVEFSDLSALNSDGIVLAPLKFDKEQ MEQSFSDKFLQNVETKTFLRKGNGIGPGAGVNIAKFKASEASVTPKEEGESDELAFEA DDSMDMAKEDEEDELESMVVEDSADMENGRSRLSQESDKLDNSGSENGDCLRSLSQVD PASVAELPAAVPTTFHTAVSLQDSPEESPVSWNSRLHHPFSYPHETSDIDASMDSPIG SPASWNSHSLAQTEVDAARMRKKWGSAQKPFLVANATHNQSRRDVTKGFKRLLKFGRK SRGTDSLVDWISATTSEGDDDTEDGRDPANRSSEDLRKSRMGFSQGHPSDDGFNESEL FNDQIQSLHSSIPAPPANFKLREDHMSGSSIKAPRSFFSLSSFRSKGSDSKPR" CDS complement(join(21309005..21309069,21310373..21311786, 21311937..21314091,21315949..21316101,21316690..21316732, 21319679..21319709,21319808..21319907,21319994..21320176, 21320260..21320318)) /locus_tag="TCM_029207" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY27340.1" /db_xref="Phytozome:GSVIVT01016705001" /db_xref="TAIR:AT3G14172.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXQ6" /translation="MKSDTLLDYAVFQLSPKRSRCELFVSSNGNTEKLASGLVKPFVT HLKVAEEQVALSIQSIKLEIEKRKNAETWFTKGTLERFVRFVSTPEVLELVNTFDAEM SQLEAAQRIYSQGVGDQPSGALGGDGAGMTAAADATKKELLRAIDVRLITVQQDLATA FARASAAGFNSDTVSELQQFADRFGAHRLHEACTKFISLCQRRPELISPWKPGVDDQV VRASWGSDMSIDDPNEDQIGSHVNSRSHQPPQNKHQEQQLQPNATQTQHHIDQSKPAI SQQPKPSITTQQRSQNENKEEEKKDEGVTESSPSQVSQPARRLSVQDRINLFENKQKE SSSSGGKPIAVGKSVELRRLSSEVSSAPAVVEKAVLRRWSGASDMSIDLGNDKKDGST DSPLCTPSSSSASQGKSNVFQGLSEDKEQKDEKGLSDKVSSVKVEPKSGSGRDADSGL KDHGEVQVQVGNSLGKEEDVGLKGRMNLKDQLGSQYNQYHQSFTSKSEQLELGDQVVS QEKVKGSLTGERGGSEVQSRVFPDKAVIVGVKNQPTSQAQVGVADTVGDAMSEGELKN RVEAQGEDQSTMHLRLRAQGHSRTLSGQFEGSIGLKTKEAQYIGTEGDQLTPQPRWRA FTGEVEELGKKDVASSEKQISKVEDSGAQKMKFKKQLPVGPEQSKKSLGRRDDSGSLY VNNKSVLGKKVPESEESFSAPKMQEPTQRIRQTRGNQELNDELKMKANELEKLFAEHK LRVPGDQFSSVRRSKPADVLIEQEASSQYKKPVAVDVSPAQMPDKNSVSEPMGSLSNM AKFCTPLTKMVESQECADTLTQNLSGISFSDDSRGRFYERYMQKRDAKLREEWGSKRA EKEAKLKAMQDILERSRAEMKAKFSGSADRQDSVSSARRRAEKVRSFNFQSQHPISSI QSEEDEDLSEFSDQKYYGQDRSFNEVSLPDGSSRSSNTKKLLPNRNVSLSTPRTMAAA VPRSAAKVANASSGRRRAQSENPLVQSVPNFSDLRKENTKPSSGAAKMTSRSQVRNYA RTKSTNEEIALGKDDQPRRSQSLRKSSAGPVEFSDLSALNSDGIVLAPLKFDKEQMEQ SFSDKFLQNVETKTFLRKGNGIGPGAGVNIAKFKASEASVTPKEEGESDELAFEADDS MDMAKEDEEDELESMVVEDSADMENGRSRLSQESDKLDNSGSENGDCLRSLSQVDPAS VAELPAAVPTTFHTAVSLQDSPEESPVSWNSRLHHPFSYPHETSDIDASMDSPIGSPA SWNSHSLAQTEVDAARMRKKWGSAQKPFLVANATHNQSRRDVTKGFKRLLKFGRKSRG TDSLVDWISATTSEGDDDTEDGRDPANRSSEDLRKSRMGFSQGHPSDDGFNESELFND QTPRSFFSLSSFRSKGSDSKPR" CDS complement(join(21309005..21309069,21309552..21309635, 21310373..21311786,21311937..21314091,21315949..21316101, 21316690..21316732,21319679..21319709,21319808..21319907, 21319994..21320176,21320260..21320318)) /locus_tag="TCM_029207" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27337.1" /db_xref="Phytozome:GSVIVT01016705001" /db_xref="TAIR:AT3G14172.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXQ6" /translation="MKSDTLLDYAVFQLSPKRSRCELFVSSNGNTEKLASGLVKPFVT HLKVAEEQVALSIQSIKLEIEKRKNAETWFTKGTLERFVRFVSTPEVLELVNTFDAEM SQLEAAQRIYSQGVGDQPSGALGGDGAGMTAAADATKKELLRAIDVRLITVQQDLATA FARASAAGFNSDTVSELQQFADRFGAHRLHEACTKFISLCQRRPELISPWKPGVDDQV VRASWGSDMSIDDPNEDQIGSHVNSRSHQPPQNKHQEQQLQPNATQTQHHIDQSKPAI SQQPKPSITTQQRSQNENKEEEKKDEGVTESSPSQVSQPARRLSVQDRINLFENKQKE SSSSGGKPIAVGKSVELRRLSSEVSSAPAVVEKAVLRRWSGASDMSIDLGNDKKDGST DSPLCTPSSSSASQGKSNVFQGLSEDKEQKDEKGLSDKVSSVKVEPKSGSGRDADSGL KDHGEVQVQVGNSLGKEEDVGLKGRMNLKDQLGSQYNQYHQSFTSKSEQLELGDQVVS QEKVKGSLTGERGGSEVQSRVFPDKAVIVGVKNQPTSQAQVGVADTVGDAMSEGELKN RVEAQGEDQSTMHLRLRAQGHSRTLSGQFEGSIGLKTKEAQYIGTEGDQLTPQPRWRA FTGEVEELGKKDVASSEKQISKVEDSGAQKMKFKKQLPVGPEQSKKSLGRRDDSGSLY VNNKSVLGKKVPESEESFSAPKMQEPTQRIRQTRGNQELNDELKMKANELEKLFAEHK LRVPGDQFSSVRRSKPADVLIEQEASSQYKKPVAVDVSPAQMPDKNSVSEPMGSLSNM AKFCTPLTKMVESQECADTLTQNLSGISFSDDSRGRFYERYMQKRDAKLREEWGSKRA EKEAKLKAMQDILERSRAEMKAKFSGSADRQDSVSSARRRAEKVRSFNFQSQHPISSI QSEEDEDLSEFSDQKYYGQDRSFNEVSLPDGSSRSSNTKKLLPNRNVSLSTPRTMAAA VPRSAAKVANASSGRRRAQSENPLVQSVPNFSDLRKENTKPSSGAAKMTSRSQVRNYA RTKSTNEEIALGKDDQPRRSQSLRKSSAGPVEFSDLSALNSDGIVLAPLKFDKEQMEQ SFSDKFLQNVETKTFLRKGNGIGPGAGVNIAKFKASEASVTPKEEGESDELAFEADDS MDMAKEDEEDELESMVVEDSADMENGRSRLSQESDKLDNSGSENGDCLRSLSQVDPAS VAELPAAVPTTFHTAVSLQDSPEESPVSWNSRLHHPFSYPHETSDIDASMDSPIGSPA SWNSHSLAQTEVDAARMRKKWGSAQKPFLVANATHNQSRRDVTKGFKRLLKFGRKSRG TDSLVDWISATTSEGDDDTEDGRDPANRSSEDLRKSRMGFSQGHPSDDGFNESELFND QIQSLHSSIPAPPANFKLREDHMSGSSIKAPRSFFSLSSFRSKGSDSKPR" CDS complement(join(21309005..21309069,21309552..21309635, 21310373..21311786,21311937..21314091,21315949..21316101, 21316690..21316732,21319679..21319709,21319808..21319907, 21319994..21320176,21320260..21320318)) /locus_tag="TCM_029207" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27338.1" /db_xref="Phytozome:GSVIVT01016705001" /db_xref="TAIR:AT3G14172.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXQ6" /translation="MKSDTLLDYAVFQLSPKRSRCELFVSSNGNTEKLASGLVKPFVT HLKVAEEQVALSIQSIKLEIEKRKNAETWFTKGTLERFVRFVSTPEVLELVNTFDAEM SQLEAAQRIYSQGVGDQPSGALGGDGAGMTAAADATKKELLRAIDVRLITVQQDLATA FARASAAGFNSDTVSELQQFADRFGAHRLHEACTKFISLCQRRPELISPWKPGVDDQV VRASWGSDMSIDDPNEDQIGSHVNSRSHQPPQNKHQEQQLQPNATQTQHHIDQSKPAI SQQPKPSITTQQRSQNENKEEEKKDEGVTESSPSQVSQPARRLSVQDRINLFENKQKE SSSSGGKPIAVGKSVELRRLSSEVSSAPAVVEKAVLRRWSGASDMSIDLGNDKKDGST DSPLCTPSSSSASQGKSNVFQGLSEDKEQKDEKGLSDKVSSVKVEPKSGSGRDADSGL KDHGEVQVQVGNSLGKEEDVGLKGRMNLKDQLGSQYNQYHQSFTSKSEQLELGDQVVS QEKVKGSLTGERGGSEVQSRVFPDKAVIVGVKNQPTSQAQVGVADTVGDAMSEGELKN RVEAQGEDQSTMHLRLRAQGHSRTLSGQFEGSIGLKTKEAQYIGTEGDQLTPQPRWRA FTGEVEELGKKDVASSEKQISKVEDSGAQKMKFKKQLPVGPEQSKKSLGRRDDSGSLY VNNKSVLGKKVPESEESFSAPKMQEPTQRIRQTRGNQELNDELKMKANELEKLFAEHK LRVPGDQFSSVRRSKPADVLIEQEASSQYKKPVAVDVSPAQMPDKNSVSEPMGSLSNM AKFCTPLTKMVESQECADTLTQNLSGISFSDDSRGRFYERYMQKRDAKLREEWGSKRA EKEAKLKAMQDILERSRAEMKAKFSGSADRQDSVSSARRRAEKVRSFNFQSQHPISSI QSEEDEDLSEFSDQKYYGQDRSFNEVSLPDGSSRSSNTKKLLPNRNVSLSTPRTMAAA VPRSAAKVANASSGRRRAQSENPLVQSVPNFSDLRKENTKPSSGAAKMTSRSQVRNYA RTKSTNEEIALGKDDQPRRSQSLRKSSAGPVEFSDLSALNSDGIVLAPLKFDKEQMEQ SFSDKFLQNVETKTFLRKGNGIGPGAGVNIAKFKASEASVTPKEEGESDELAFEADDS MDMAKEDEEDELESMVVEDSADMENGRSRLSQESDKLDNSGSENGDCLRSLSQVDPAS VAELPAAVPTTFHTAVSLQDSPEESPVSWNSRLHHPFSYPHETSDIDASMDSPIGSPA SWNSHSLAQTEVDAARMRKKWGSAQKPFLVANATHNQSRRDVTKGFKRLLKFGRKSRG TDSLVDWISATTSEGDDDTEDGRDPANRSSEDLRKSRMGFSQGHPSDDGFNESELFND QIQSLHSSIPAPPANFKLREDHMSGSSIKAPRSFFSLSSFRSKGSDSKPR" CDS complement(join(21309526..21309635,21310373..21311786, 21311937..21314091,21315949..21316101,21316690..21316732, 21319679..21319709,21319808..21319907,21319994..21320176, 21320260..21320318)) /locus_tag="TCM_029207" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 6" /protein_id="EOY27342.1" /db_xref="Phytozome:GSVIVT01016705001" /db_xref="TAIR:AT3G14172.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXQ6" /translation="MKSDTLLDYAVFQLSPKRSRCELFVSSNGNTEKLASGLVKPFVT HLKVAEEQVALSIQSIKLEIEKRKNAETWFTKGTLERFVRFVSTPEVLELVNTFDAEM SQLEAAQRIYSQGVGDQPSGALGGDGAGMTAAADATKKELLRAIDVRLITVQQDLATA FARASAAGFNSDTVSELQQFADRFGAHRLHEACTKFISLCQRRPELISPWKPGVDDQV VRASWGSDMSIDDPNEDQIGSHVNSRSHQPPQNKHQEQQLQPNATQTQHHIDQSKPAI SQQPKPSITTQQRSQNENKEEEKKDEGVTESSPSQVSQPARRLSVQDRINLFENKQKE SSSSGGKPIAVGKSVELRRLSSEVSSAPAVVEKAVLRRWSGASDMSIDLGNDKKDGST DSPLCTPSSSSASQGKSNVFQGLSEDKEQKDEKGLSDKVSSVKVEPKSGSGRDADSGL KDHGEVQVQVGNSLGKEEDVGLKGRMNLKDQLGSQYNQYHQSFTSKSEQLELGDQVVS QEKVKGSLTGERGGSEVQSRVFPDKAVIVGVKNQPTSQAQVGVADTVGDAMSEGELKN RVEAQGEDQSTMHLRLRAQGHSRTLSGQFEGSIGLKTKEAQYIGTEGDQLTPQPRWRA FTGEVEELGKKDVASSEKQISKVEDSGAQKMKFKKQLPVGPEQSKKSLGRRDDSGSLY VNNKSVLGKKVPESEESFSAPKMQEPTQRIRQTRGNQELNDELKMKANELEKLFAEHK LRVPGDQFSSVRRSKPADVLIEQEASSQYKKPVAVDVSPAQMPDKNSVSEPMGSLSNM AKFCTPLTKMVESQECADTLTQNLSGISFSDDSRGRFYERYMQKRDAKLREEWGSKRA EKEAKLKAMQDILERSRAEMKAKFSGSADRQDSVSSARRRAEKVRSFNFQSQHPISSI QSEEDEDLSEFSDQKYYGQDRSFNEVSLPDGSSRSSNTKKLLPNRNVSLSTPRTMAAA VPRSAAKVANASSGRRRAQSENPLVQSVPNFSDLRKENTKPSSGAAKMTSRSQVRNYA RTKSTNEEIALGKDDQPRRSQSLRKSSAGPVEFSDLSALNSDGIVLAPLKFDKEQMEQ SFSDKFLQNVETKTFLRKGNGIGPGAGVNIAKFKASEASVTPKEEGESDELAFEADDS MDMAKEDEEDELESMVVEDSADMENGRSRLSQESDKLDNSGSENGDCLRSLSQVDPAS VAELPAAVPTTFHTAVSLQDSPEESPVSWNSRLHHPFSYPHETSDIDASMDSPIGSPA SWNSHSLAQTEVDAARMRKKWGSAQKPFLVANATHNQSRRDVTKGFKRLLKFGRKSRG TDSLVDWISATTSEGDDDTEDGRDPANRSSEDLRKSRMGFSQGHPSDDGFNESELFND QIQSLHSSIPAPPANFKLREDHMSGSSIKGDLLLMLM" mobile_element complement(21329890..21330050) /note="source:CACAO_M_S_E14849_F156_scaffold_2 690 799" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21333788..21335296) /locus_tag="TCM_029209" /note="dbxref CacaoGD:Thecc1EG029209" mRNA complement(21333788..21335296) /locus_tag="TCM_029209" /product="Sequence-specific DNA binding transcription factors, putative" /inference="alignment:exonerate- protein:2:ricco:29727.m000472" /inference="similar to AA sequence:TAIR:AT3G14180.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(21334042..21335232) /locus_tag="TCM_029209" /codon_start=1 /product="Sequence-specific DNA binding transcription factors, putative" /protein_id="EOY27343.1" /db_xref="TAIR:AT3G14180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7L2D2" /translation="MEEDEDIQSHPSAGAAGSPSPSSPSRPSNGRITVTVAAAPPSEA SPPQEPHQQENALALALLPPQQQPSQPKNNGGGGGGGREDCWSEGATAVLIDAWGERY LELSRGNLKQKHWKEVADIVSGREDYTKTPKTDIQCKNRIDTVKKKYKLEKAKIAGGG GPSKWVFFEKLDQLIGPTAKIAVHTSAVGGGSGGSTGLLSKVPMGIPVGIRSSLNPFR NSQLQERQQQQKQPRMVVQKNQNKMQLRKRGPVDSDSEEEEEEEEEEADSLDSLPPPP TGKRARRMVHKGVNSGGKGRKWGNSVRELTQAILRFGEAYEQAESAKLQQVVEMEKQR MKFAKELELQRMQFFMKTQLEISQLKHGRKAGGIGNSSNHHSNINNNNNNNNSNNNHS DSSN" gene complement(21336072..21338716) /locus_tag="TCM_029210" /note="dbxref CacaoGD:Thecc1EG029210" mRNA complement(join(21336072..21336444,21338366..21338716)) /locus_tag="TCM_029210" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5243t1" CDS complement(join(21336269..21336444,21338366..21338618)) /locus_tag="TCM_029210" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27344.1" /translation="MTATARDDRRLARRTATVARGRLRQLMRIEEKAKKVFSVSKGKK GVHLMSVYNNRERDRRQKGIKEAKNEISPFPLIFDRLGWGELCVLERVGSLRTQRRNV ETGNGKHVTLSPVAYVVHPRQDVLFLTQIADTCRLHRHTG" mobile_element 21337223..21338150 /note="source:CACAO_Again_on_S_E139_scaffold_4 8 985" /mobile_element_type="transposon:TIR/hAT" mobile_element 21338204..21338998 /note="source:CACAO_Again_on_S_E215_scaffold_6 1 795" /mobile_element_type="transposon:TIR/hAT" gene complement(21341018..21342786) /locus_tag="TCM_029211" /note="dbxref CacaoGD:Thecc1EG029211" mRNA complement(join(21341018..21341547,21341976..21342075, 21342300..21342786)) /locus_tag="TCM_029211" /product="Dormancy/auxin associated family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06820.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016701001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5252t1" mobile_element complement(21341318..21341424) /note="source:CACAO_M_E52882_F369_scaffold_8 1410 1516" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(21341364..21341547,21341976..21342075, 21342300..21342561)) /locus_tag="TCM_029211" /codon_start=1 /product="Dormancy/auxin associated family protein, putative" /protein_id="EOY27345.1" /db_xref="Phytozome:GSVIVT01016701001" /db_xref="TAIR:AT1G54070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TZM6" /translation="MGFLHKLWDETLAGPMPETGLGKLRKYDSFSSTRSSPAPVVDGN NKMMITRSITILKSNSGFRNLSVEPSSTPDSPSGSSTPGTPFSPGTPRGDFRRFTSRK SSAEALESAESRSPTVYDWIVISALDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXYIYIYIYIYIYIYISIAYI" mobile_element 21346271..21347137 /note="source:CACAO_PIF_E144_scaffold_10 1203 2057" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 21347696..21347982 /note="source:CACAO_PIF_E144_scaffold_10 1833 2122" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 21348083..21348290 /note="source:CACAO_PIF_E144_scaffold_10 2154 2390" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 21349133..21349202 /note="source:CACAO_M_S_E144734_F98_scaffold_10 498 572" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21351541..21352416) /locus_tag="TCM_029212" /note="dbxref CacaoGD:Thecc1EG029212" mRNA complement(21351541..21352416) /locus_tag="TCM_029212" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.29 coverage" CDS complement(21351903..21352172) /locus_tag="TCM_029212" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27346.1" /translation="MVSRDRPPQYPAPLFGLVKGNENKVVGPHPCKLPNKIACRVPRL YFSPRFPSLSICQTIWATCMVSVWRFQGREKITAGLNSRGCLIPF" gene complement(21352524..21356358) /locus_tag="TCM_029213" /note="dbxref CacaoGD:Thecc1EG029213" mRNA complement(join(21352524..21353155,21353837..21354079, 21354916..21354972,21355120..21355187,21355386..21355479, 21355920..21356358)) /locus_tag="TCM_029213" /product="Chaperone DnaJ-domain containing protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g01400.2" /inference="similar to AA sequence:Phytozome:POPTR_0001s16500.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b028253t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5299t6" mRNA complement(join(21352524..21353159,21353837..21354079, 21354916..21354972,21355120..21355187,21355386..21355479, 21355920..21356179)) /locus_tag="TCM_029213" /product="Chaperone DnaJ-domain containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g01400.2" /inference="similar to AA sequence:Phytozome:GSVIVT01016700001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5299t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5299t6" mRNA complement(join(21352526..21353159,21353837..21354079, 21354916..21354972,21355120..21355187,21355386..21355479, 21355920..21356348)) /locus_tag="TCM_029213" /product="Chaperone DnaJ-domain containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g01400.2" /inference="similar to AA sequence:Phytozome:GSVIVT01016700001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00343t00002; alternateUTRof:Thecc1EG029213t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5299t6; inference alignment:Newbler:10:TSA:cgbaB_g00343t00001" CDS complement(join(21353003..21353155,21353837..21354079, 21354916..21354972,21355120..21355187,21355386..21355479, 21355920..21356024)) /locus_tag="TCM_029213" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Chaperone DnaJ-domain containing protein isoform 3" /protein_id="EOY27349.1" /db_xref="Phytozome:POPTR_0001s16500.1" /db_xref="TAIR:AT3G14200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LJG5" /translation="MANGEEKNNDFYAVLGLNKECTPTELRTAYKKLALRWHPDRCSA SGNSKFVEEAKKKFQAIQQAYSVLSDSNKRFLYDVGAYDSDDDENGMGDFLNEMAGMM SQTKSNENGGESFEELQELFEEMFQADIDSFESTGQSTPSCSASSSFGSYGESSSSNK RNSSEMSSVETRLESSSSFDAQFHSFCLGVEHRQDIKQHRGARGGMRGAAGGSRRRNG RKQKVSSGHDVTSNDCGISAS" CDS complement(join(21353085..21353159,21353837..21354079, 21354916..21354972,21355120..21355187,21355386..21355479, 21355920..21356024)) /locus_tag="TCM_029213" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Chaperone DnaJ-domain containing protein isoform 1" /protein_id="EOY27347.1" /db_xref="Phytozome:GSVIVT01016700001" /db_xref="TAIR:AT3G14200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LJG5" /translation="MANGEEKNNDFYAVLGLNKECTPTELRTAYKKLALRWHPDRCSA SGNSKFVEEAKKKFQAIQQAYSVLSDSNKRFLYDVGAYDSDDDENGMGDFLNEMAGMM SQTKSNENGGESFEELQELFEEMFQADIDSFESTGQSTPSCSASSSFGSYGESSSSNK RNSSEMSSVETRLESSSSFDAQFHSFCLGSGGTQARYQATQRSQRRNARSSRR" CDS complement(join(21353085..21353159,21353837..21354079, 21354916..21354972,21355120..21355187,21355386..21355479, 21355920..21356024)) /locus_tag="TCM_029213" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Chaperone DnaJ-domain containing protein isoform 1" /protein_id="EOY27348.1" /db_xref="Phytozome:GSVIVT01016700001" /db_xref="TAIR:AT3G14200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LJG5" /translation="MANGEEKNNDFYAVLGLNKECTPTELRTAYKKLALRWHPDRCSA SGNSKFVEEAKKKFQAIQQAYSVLSDSNKRFLYDVGAYDSDDDENGMGDFLNEMAGMM SQTKSNENGGESFEELQELFEEMFQADIDSFESTGQSTPSCSASSSFGSYGESSSSNK RNSSEMSSVETRLESSSSFDAQFHSFCLGSGGTQARYQATQRSQRRNARSSRR" gene complement(21360016..21364451) /locus_tag="TCM_029214" /note="dbxref CacaoGD:Thecc1EG029214" mRNA complement(join(21360016..21360298,21360399..21360500, 21361024..21361493,21362436..21362534,21362666..21362746, 21363631..21363722,21363962..21364012,21364109..21364222, 21364330..21364451)) /locus_tag="TCM_029214" /product="NADH:ubiquinone oxidoreductase intermediate-associated protein 30" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s08710.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s08710.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc744t2" CDS complement(join(21361305..21361493,21362436..21362534, 21362666..21362746,21363631..21363722,21363962..21364012, 21364109..21364222,21364330..21364381)) /locus_tag="TCM_029214" /codon_start=1 /product="NADH:ubiquinone oxidoreductase intermediate-associated protein 30" /protein_id="EOY27350.1" /db_xref="Phytozome:POPTR_0010s08710.2" /db_xref="TAIR:AT1G17350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LQI7" /translation="MSRFRGLWQASLNATKKALTWNVEDWIPPTEKYIFNFSSKEELK KWHLYSDSEFGGLSSASLEIKDEGNTSNGVFSGNLSLDVNEGSKWNITRSGFCGMRSK KFDGFIDLDAYDTIALKLKGDGRSYISTIYTENWVNSPGQLEDNSWQSFVFVPKDNWY IAKIPLAHYLPTWRGNVIDAKLEMNPSRILGMSLSVNAEGGVPGAKSGPGDFRVEIDW IKALRTE" gene 21365700..21366207 /locus_tag="TCM_029215" /note="dbxref CacaoGD:Thecc1EG029215" mRNA 21365700..21366207 /locus_tag="TCM_029215" /product="SAUR-like auxin-responsive protein family" /inference="alignment:exonerate- protein:2:ricco:29727.m000466" /inference="similar to AA sequence:ricco:29727.m000466" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2617t1" CDS 21365721..21366026 /locus_tag="TCM_029215" /note="dbxref ricco:29727.m000466" /codon_start=1 /product="SAUR-like auxin-responsive protein family" /protein_id="EOY27351.1" /translation="MGARASKLNRLIGGRRSMRFGVPPSTPKGYVPVCVGVNDDTRRF IVHTTTLRDADFLELLCKSAEEYGFCNQGILRIPYAAKDFEEWIMMRRAKQKIVRVS" mobile_element 21367148..21373268 /note="source:INTACT159_F2_scaffold_6-int 1 6121" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21376374..21377348 /locus_tag="TCM_029217" /note="dbxref CacaoGD:Thecc1EG029217" mRNA 21376374..21377348 /locus_tag="TCM_029217" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc907t9" CDS 21376507..21376788 /locus_tag="TCM_029217" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27352.1" /translation="MIVRYNSYQALKKERKQYRKRTERKGKILIDEVLEQHHPSVKSN GLILTVPEGHTNTKINCLVLNLHYYFPPFFMPLKSFYNFGKAFSFSSLC" gene complement(21376758..21377162) /locus_tag="TCM_029218" /note="dbxref CacaoGD:Thecc1EG029218" mRNA complement(21376758..21377162) /locus_tag="TCM_029218" /product="SAUR family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29727.m000464" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037466t1" /inference="similar to AA sequence:ricco:29727.m000464" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc907t9" CDS complement(21376785..21377156) /locus_tag="TCM_029218" /note="dbxref ricco:29727.m000464; paralog of Thecc1EG037466t1" /codon_start=1 /product="SAUR family protein, putative" /protein_id="EOY27353.1" /db_xref="TAIR:AT1G17345.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N7H0" /translation="MVKVGKLTKLKSAIKRWPSFTKLTRSSSAIAAAEPEDKAIPRDL HAVYVGKSRRRYLVGSEIICHPLLQELIDRSSGGDGNDDDGGEVVVSCEVVLFEHLLW MLENDGAQLGSMEELVDFYTC" mobile_element 21380249..21380296 /note="source:scaffold_6_CACTA_0706 1407 1455" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21380268..21380317 /note="source:CACAO_M_E5899_F5_scaffold_2 10366 10416" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21380461..21381337 /locus_tag="TCM_029219" /note="dbxref CacaoGD:Thecc1EG029219" mRNA join(21380461..21380802,21380893..21381337) /locus_tag="TCM_029219" /product="HSP20-like chaperones superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016697001" /inference="similar to AA sequence:ricco:29727.m000463" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11102t00001" gene complement(21380526..21389711) /locus_tag="TCM_029220" /note="dbxref CacaoGD:Thecc1EG029220" mRNA complement(join(21380526..21382387,21382563..21382785, 21383109..21383471,21383567..21383652,21384093..21384182, 21384713..21384796,21384892..21385044,21385249..21385341, 21386000..21386071,21386450..21386530,21386647..21386715, 21387085..21387160,21387930..21388049,21388466..21388541, 21388986..21389711)) /locus_tag="TCM_029220" /product="CCAAT/enhancer-binding protein zeta isoform 5" /inference="alignment:exonerate- protein:2:ricco:29937.m000203" /inference="similar to AA sequence:Phytozome:GSVIVT01016696001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5384t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5384t2" mRNA complement(join(21380526..21382387,21382563..21382785, 21383109..21383471,21383567..21383649,21384093..21384182, 21384430..21384573,21384713..21384796,21384892..21385044, 21385249..21385341,21386000..21386071,21386450..21386530, 21386647..21386715,21387085..21387160,21387930..21388049, 21388466..21388541,21388986..21389711)) /locus_tag="TCM_029220" /product="JHL06B08.2 protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29937.m000203" /inference="similar to AA sequence:Phytozome:GSVIVT01016696001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5384t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5384t2" CDS join(21380602..21380802,21380893..21381150) /locus_tag="TCM_029219" /note="dbxref ricco:29727.m000463" /codon_start=1 /product="HSP20-like chaperones superfamily protein" /protein_id="EOY27354.1" /db_xref="TAIR:AT1G54050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXR5" /translation="MSRVADTMNHWLSFPENIGKLMFSSRTQDTHDNENKGFSSIPAD ILDTPKEFIFFLDVPGLSKTDIQVTVENEHTLVIKSGGKRKREEVEEEGCKYIRLERK PPQKRMRKIRLPENANASAITAKCENGVLTVVVEKLPPPPKPKTVEVAIA" mRNA complement(join(21380774..21380803,21380894..21382387, 21382563..21382785,21383109..21383471,21383567..21383649, 21384093..21384178,21384426..21384573,21384713..21384796, 21384892..21385044,21385249..21385341,21386450..21386530, 21386647..21386715,21387085..21387160,21387930..21388049, 21388466..21388541,21388986..>21389657)) /locus_tag="TCM_029220" /product="CCAAT/enhancer-binding protein zeta isoform 4" /inference="alignment:exonerate- protein:2:ricco:29937.m000203" /inference="similar to AA sequence:Phytozome:GSVIVT01016696001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc462t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5384t2" mRNA complement(join(21380774..21380803,21380894..21382387, 21382563..21382785,21383109..21383471,21383567..21383649, 21384093..21384182,21384713..21384796,21384892..21385044, 21385249..21385341,21386000..21386071,21386450..21386530, 21386647..21386715,21387085..21387160,21387930..21388049, 21388466..21388541,21388986..>21389657)) /locus_tag="TCM_029220" /product="CCAAT/enhancer-binding protein zeta isoform 3" /inference="alignment:exonerate- protein:2:ricco:29937.m000203" /inference="similar to AA sequence:Phytozome:GSVIVT01016696001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc462t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5384t2" mRNA complement(join(21380774..21380803,21380894..21382387, 21382563..21382785,21383109..21383471,21383567..21383649, 21384093..21384178,21384426..21384573,21384713..21384796, 21384892..21385044,21385249..21385341,21386000..21386071, 21386450..21386530,21386647..21386715,21387085..21387160, 21387930..21388049,21388466..21388541, 21388986..>21389657)) /locus_tag="TCM_029220" /product="JHL06B08.2 protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29937.m000203" /inference="similar to AA sequence:Phytozome:GSVIVT01016696001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc462t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5384t2" CDS complement(join(21381728..21382387,21382563..21382785, 21383109..21383471,21383567..21383652,21384093..21384182, 21384713..21384796,21384892..21385044,21385249..21385341, 21386000..21386071,21386450..21386530,21386647..21386715, 21387085..21387160,21387930..21388049,21388466..21388541, 21388986..21389673)) /locus_tag="TCM_029220" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="CCAAT/enhancer-binding protein zeta isoform 5" /protein_id="EOY27359.1" /db_xref="Phytozome:GSVIVT01016696001" /db_xref="TAIR:AT1G72440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BUU5" /translation="MSNSKTPQDVELLKSDIASFASSLGFSTHAALPYSGFNDVDFRK TGPLKRPKPPRTPNIKNQSSQPEKKPNNTQIPKTDSTRNNQRPKPKPPVLSLEDTNKN NRFLKEHDKFKNLPALPLVKPSALSAWYEDELELEKKVFGGEGKGKKAVEVRNVEEWK RLVEKKRELGERLMWQYTKDYELSKGKSGDMKMVMASQRSGTAADKVSAFSFVVADNP VANLKSLDGLLGLVTSKVGKRYAFTGFEALKELFISKLLPDRKLKTLLQHPVNELPET KDGHSLLLFWYWEDCLKQRYERFVIAVEEASRDMLPALKDKALKTMYVLLKSKSEQER KLLSSLVNKLGDPQNKGASNADFYLSNLLSDHPNMKAVVIDEVDTFLFRPHLGLRAKY HAINFLSQIRLSQKGDGPKVAKRLIDVYFALFKVLITEAGRSEQLDNKSKKAVKISPS SRENKLKGSGESHVELDSRLLSVLLTGINRAFPYVSSNEADDIIDMQTPMLFQLAEMF IGLLLRAMKCDVNLKRVSAFSKRVLQQVALQQPPQYACGCLFLISEVLKARPQLWNMV LQNESVDEDLEHFEDIVEETDTGPTCASKKEENSADVHGGEGANSDSNCSEDEDVLPT NYSDDDGSDDADELFIRESPNDPQKPKMISNQKVLKPQVSSTQSFLPGGYNPRHREPS YSDADRASWWELMVLSTHVHPSVATMAATLLSGANIVYNGNPLNDLSLTAFLDKFMEK KPKASSWHGGSQIEPAKKLDMSNHLIGQEILSLAETDVPPEDLVFHKFYMNKMNSSNK PKKKKKKKKGAEEEAAEELFDVGGDDVDDDYVDGGDESDNEEIENMLDSANPSLDADG DYDYDDLDQVANDDDDDLIGDASDAEMDITSDDANGEDFVAAGGDGRIDDDAIDIGNA DDVSDDDDEFNPRKRKRKSGKKTLASPFASLEDYEHLLNEDGHTDKESTKKKKPRRGK RKSSK" CDS complement(join(21381728..21382387,21382563..21382785, 21383109..21383471,21383567..21383649,21384093..21384182, 21384430..21384573,21384713..21384796,21384892..21385044, 21385249..21385341,21386000..21386071,21386450..21386530, 21386647..21386715,21387085..21387160,21387930..21388049, 21388466..21388541,21388986..21389673)) /locus_tag="TCM_029220" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="JHL06B08.2 protein, putative isoform 1" /protein_id="EOY27355.1" /db_xref="Phytozome:GSVIVT01016696001" /db_xref="TAIR:AT1G72440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NU91" /translation="MSNSKTPQDVELLKSDIASFASSLGFSTHAALPYSGFNDVDFRK TGPLKRPKPPRTPNIKNQSSQPEKKPNNTQIPKTDSTRNNQRPKPKPPVLSLEDTNKN NRFLKEHDKFKNLPALPLVKPSALSAWYEDELELEKKVFGGEGKGKKAVEVRNVEEWK RLVEKKRELGERLMWQYTKDYELSKGKSGDMKMVMASQRSGTAADKVSAFSFVVADNP VANLKSLDGLLGLVTSKVGKRYAFTGFEALKELFISKLLPDRKLKTLLQHPVNELPET KDGHSLLLFWYWEDCLKQRYERFVIAVEEASRDMLPALKDKALKTMYVLLKSKSEQER KLLSSLVNKLGDPQNKGASNADFYLSNLLSDHPNMKAVVIDEVDTFLFRPHLGLRAKY HAINFLSQIRLSQKGDGPKVAKRLIDVYFALFKVLITEAGRSEQLDNKSKKAVKISPS SRENKLKGSGESHVELDSRLLSVLLTGINRAFPYVSSNEADDIIDMQTPMLFQLVHSK NFNVGIQALMLLDKISSKNQVVSDRFYRALYSKLLLPASMNSSKAEMFIGLLLRAMKC DVNLKRVSAFSKRVLQVALQQPPQYACGCLFLISEVLKARPQLWNMVLQNESVDEDLE HFEDIVEETDTGPTCASKKEENSADVHGGEGANSDSNCSEDEDVLPTNYSDDDGSDDA DELFIRESPNDPQKPKMISNQKVLKPQVSSTQSFLPGGYNPRHREPSYSDADRASWWE LMVLSTHVHPSVATMAATLLSGANIVYNGNPLNDLSLTAFLDKFMEKKPKASSWHGGS QIEPAKKLDMSNHLIGQEILSLAETDVPPEDLVFHKFYMNKMNSSNKPKKKKKKKKGA EEEAAEELFDVGGDDVDDDYVDGGDESDNEEIENMLDSANPSLDADGDYDYDDLDQVA NDDDDDLIGDASDAEMDITSDDANGEDFVAAGGDGRIDDDAIDIGNADDVSDDDDEFN PRKRKRKSGKKTLASPFASLEDYEHLLNEDGHTDKESTKKKKPRRGKRKSSK" CDS complement(join(21381728..21382387,21382563..21382785, 21383109..21383471,21383567..21383649,21384093..21384178, 21384426..21384573,21384713..21384796,21384892..21385044, 21385249..21385341,21386450..21386530,21386647..21386715, 21387085..21387160,21387930..21388049,21388466..21388541, 21388986..>21389655)) /locus_tag="TCM_029220" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="CCAAT/enhancer-binding protein zeta isoform 4" /protein_id="EOY27358.1" /db_xref="Phytozome:GSVIVT01016696001" /db_xref="TAIR:AT1G72440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NU91" /translation="PQDVELLKSDIASFASSLGFSTHAALPYSGFNDVDFRKTGPLKR PKPPRTPNIKNQSSQPEKKPNNTQIPKTDSTRNNQRPKPKPPVLSLEDTNKNNRFLKE HDKFKNLPALPLVKPSALSAWYEDELELEKKVFGGEGKGKKAVEVRNVEEWKRLVEKK RELGERLMWQYTKDYELSKGKSGDMKMVMASQRSGTAADKVSAFSFVVADNPVANLKS LDGLLGLVTSKVGKRYAFTGFEALKELFISKLLPDRKLKTLLQHPVNELPETKDGHSL LLFWYWEDCLKQRYERFVIAVEEASRDMLPALKDKALKTMYVLLKSKSEQERKLLSSL VNKLGDPQNKGASNADFYLSNLLSDHPNMKINFLSQIRLSQKGDGPKVAKRLIDVYFA LFKVLITEAGRSEQLDNKSKKAVKISPSSRENKLKGSGESHVELDSRLLSVLLTGINR AFPYVSSNEADDIIDMQTPMLFQLVHSKNFNVGIQALMLLDKISSKNQVVSDRFYRAL YSKLLLPASMNSSKAKMFIGLLLRAMKCDVNLKRVSAFSKRVLQVALQQPPQYACGCL FLISEVLKARPQLWNMVLQNESVDEDLEHFEDIVEETDTGPTCASKKEENSADVHGGE GANSDSNCSEDEDVLPTNYSDDDGSDDADELFIRESPNDPQKPKMISNQKVLKPQVSS TQSFLPGGYNPRHREPSYSDADRASWWELMVLSTHVHPSVATMAATLLSGANIVYNGN PLNDLSLTAFLDKFMEKKPKASSWHGGSQIEPAKKLDMSNHLIGQEILSLAETDVPPE DLVFHKFYMNKMNSSNKPKKKKKKKKGAEEEAAEELFDVGGDDVDDDYVDGGDESDNE EIENMLDSANPSLDADGDYDYDDLDQVANDDDDDLIGDASDAEMDITSDDANGEDFVA AGGDGRIDDDAIDIGNADDVSDDDDEFNPRKRKRKSGKKTLASPFASLEDYEHLLNED GHTDKESTKKKKPRRGKRKSSK" CDS complement(join(21381728..21382387,21382563..21382785, 21383109..21383471,21383567..21383649,21384093..21384182, 21384713..21384796,21384892..21385044,21385249..21385341, 21386000..21386071,21386450..21386530,21386647..21386715, 21387085..21387160,21387930..21388049,21388466..21388541, 21388986..>21389655)) /locus_tag="TCM_029220" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="CCAAT/enhancer-binding protein zeta isoform 3" /protein_id="EOY27357.1" /db_xref="Phytozome:GSVIVT01016696001" /db_xref="TAIR:AT1G72440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BUU5" /translation="PQDVELLKSDIASFASSLGFSTHAALPYSGFNDVDFRKTGPLKR PKPPRTPNIKNQSSQPEKKPNNTQIPKTDSTRNNQRPKPKPPVLSLEDTNKNNRFLKE HDKFKNLPALPLVKPSALSAWYEDELELEKKVFGGEGKGKKAVEVRNVEEWKRLVEKK RELGERLMWQYTKDYELSKGKSGDMKMVMASQRSGTAADKVSAFSFVVADNPVANLKS LDGLLGLVTSKVGKRYAFTGFEALKELFISKLLPDRKLKTLLQHPVNELPETKDGHSL LLFWYWEDCLKQRYERFVIAVEEASRDMLPALKDKALKTMYVLLKSKSEQERKLLSSL VNKLGDPQNKGASNADFYLSNLLSDHPNMKAVVIDEVDTFLFRPHLGLRAKYHAINFL SQIRLSQKGDGPKVAKRLIDVYFALFKVLITEAGRSEQLDNKSKKAVKISPSSRENKL KGSGESHVELDSRLLSVLLTGINRAFPYVSSNEADDIIDMQTPMLFQLAEMFIGLLLR AMKCDVNLKRVSAFSKRVLQVALQQPPQYACGCLFLISEVLKARPQLWNMVLQNESVD EDLEHFEDIVEETDTGPTCASKKEENSADVHGGEGANSDSNCSEDEDVLPTNYSDDDG SDDADELFIRESPNDPQKPKMISNQKVLKPQVSSTQSFLPGGYNPRHREPSYSDADRA SWWELMVLSTHVHPSVATMAATLLSGANIVYNGNPLNDLSLTAFLDKFMEKKPKASSW HGGSQIEPAKKLDMSNHLIGQEILSLAETDVPPEDLVFHKFYMNKMNSSNKPKKKKKK KKGAEEEAAEELFDVGGDDVDDDYVDGGDESDNEEIENMLDSANPSLDADGDYDYDDL DQVANDDDDDLIGDASDAEMDITSDDANGEDFVAAGGDGRIDDDAIDIGNADDVSDDD DEFNPRKRKRKSGKKTLASPFASLEDYEHLLNEDGHTDKESTKKKKPRRGKRKSSK" CDS complement(join(21381728..21382387,21382563..21382785, 21383109..21383471,21383567..21383649,21384093..21384178, 21384426..21384573,21384713..21384796,21384892..21385044, 21385249..21385341,21386000..21386071,21386450..21386530, 21386647..21386715,21387085..21387160,21387930..21388049, 21388466..21388541,21388986..>21389655)) /locus_tag="TCM_029220" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="JHL06B08.2 protein, putative isoform 2" /protein_id="EOY27356.1" /db_xref="Phytozome:GSVIVT01016696001" /db_xref="TAIR:AT1G72440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NU91" /translation="PQDVELLKSDIASFASSLGFSTHAALPYSGFNDVDFRKTGPLKR PKPPRTPNIKNQSSQPEKKPNNTQIPKTDSTRNNQRPKPKPPVLSLEDTNKNNRFLKE HDKFKNLPALPLVKPSALSAWYEDELELEKKVFGGEGKGKKAVEVRNVEEWKRLVEKK RELGERLMWQYTKDYELSKGKSGDMKMVMASQRSGTAADKVSAFSFVVADNPVANLKS LDGLLGLVTSKVGKRYAFTGFEALKELFISKLLPDRKLKTLLQHPVNELPETKDGHSL LLFWYWEDCLKQRYERFVIAVEEASRDMLPALKDKALKTMYVLLKSKSEQERKLLSSL VNKLGDPQNKGASNADFYLSNLLSDHPNMKAVVIDEVDTFLFRPHLGLRAKYHAINFL SQIRLSQKGDGPKVAKRLIDVYFALFKVLITEAGRSEQLDNKSKKAVKISPSSRENKL KGSGESHVELDSRLLSVLLTGINRAFPYVSSNEADDIIDMQTPMLFQLVHSKNFNVGI QALMLLDKISSKNQVVSDRFYRALYSKLLLPASMNSSKAKMFIGLLLRAMKCDVNLKR VSAFSKRVLQVALQQPPQYACGCLFLISEVLKARPQLWNMVLQNESVDEDLEHFEDIV EETDTGPTCASKKEENSADVHGGEGANSDSNCSEDEDVLPTNYSDDDGSDDADELFIR ESPNDPQKPKMISNQKVLKPQVSSTQSFLPGGYNPRHREPSYSDADRASWWELMVLST HVHPSVATMAATLLSGANIVYNGNPLNDLSLTAFLDKFMEKKPKASSWHGGSQIEPAK KLDMSNHLIGQEILSLAETDVPPEDLVFHKFYMNKMNSSNKPKKKKKKKKGAEEEAAE ELFDVGGDDVDDDYVDGGDESDNEEIENMLDSANPSLDADGDYDYDDLDQVANDDDDD LIGDASDAEMDITSDDANGEDFVAAGGDGRIDDDAIDIGNADDVSDDDDEFNPRKRKR KSGKKTLASPFASLEDYEHLLNEDGHTDKESTKKKKPRRGKRKSSK" gene 21391260..21393588 /locus_tag="TCM_029221" /note="dbxref CacaoGD:Thecc1EG029221" mRNA join(21391260..21391586,21392288..21392550, 21392670..21392867,21392950..21393160,21393246..21393588) /locus_tag="TCM_029221" /product="40s ribosomal protein SA" /inference="alignment:exonerate- protein:2:ricco:30040.m000268" /inference="similar to AA sequence:ricco:30040.m000268" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08438t00001" CDS join(21391439..21391586,21392288..21392550, 21392670..21392867,21392950..21393160,21393246..21393367) /locus_tag="TCM_029221" /note="dbxref ricco:30040.m000268" /codon_start=1 /product="40s ribosomal protein SA" /protein_id="EOY27360.1" /db_xref="TAIR:AT3G04770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O65751" /translation="MATTTAPAGARQLSPKEADIQMMLAAEVHLGTKNCDYQMERYVF KRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQHTGAH AIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMR YVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAPGQKWDVMVDLFFYREPEEAKQQ EEEEAAGPDYALPAPEYGMAALGSEQWPAQIGEQWSTDVVQPPISGVPAVNWSDQVPP TDGWDAAIPPPQIPAPGIDETAPAPAPAPAPAPTGWD" gene complement(21393839..21403002) /locus_tag="TCM_029222" /note="dbxref CacaoGD:Thecc1EG029222" mRNA complement(join(21393839..21394581,21394918..21395008, 21395698..21395871,21396134..21396304,21396681..21396794, 21396937..21397058,21397382..21397724,21398096..21398221, 21398312..21398445,21398551..21398648,21398751..21398938, 21399401..21399477,21400013..21400235,21400936..21401101, 21401185..21401389,21402467..21403002)) /locus_tag="TCM_029222" /product="Phosphoinositide phosphatase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06890.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037461t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16420.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01646t00001" CDS complement(join(21394459..21394581,21394918..21395008, 21395698..21395871,21396134..21396304,21396681..21396794, 21396937..21397058,21397382..21397724,21398096..21398221, 21398312..21398445,21398551..21398648,21398751..21398938, 21399401..21399477,21400013..21400235,21400936..21401101, 21401185..21401389,21402467..21402550)) /locus_tag="TCM_029222" /note="paralog of Thecc1EG037461t1" /codon_start=1 /product="Phosphoinositide phosphatase family protein" /protein_id="EOY27361.1" /db_xref="Phytozome:POPTR_0001s16420.1" /db_xref="TAIR:AT3G14205.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXP5" /translation="MADENCSDAGTDPNPCFLQKFRLYETRSNFYMIGRDKNRAFWRL LKIDRLDPSELTILEDSTTYSEIECCDLLRRIHEGNRSTGGLKFVTACYGIVGFVKFL GPYYMLLITKRRKIGAICGHTIYAITKSEMIPIPNSPVQSNVAYSKDEKRYKKLLCTV DLTKDFFFSYSYNVMHSLQRNLCKDETGLLNYETMFVWNEFLTQGIRNNLKNTLWTVA LVYGFFKQVKLSVSGKDFKLTLIARRSRHYAGTRYLKRGVNEKGRVANDVETEQIVFE DVPEGCPTQISSVVQNRGSIPLFWSQETSRLNLKPDIILSKKDPNYEATRLHFENLVR RYGNPIIILNLIKRCEKKPRETILRAEFANAIRFLNKSLTKENRLRFLHWDLNRHSRK ATSVLALLGRVADYALNLTGIFYCQVTPNFRREGLLNLSCLVQNDECSQILSDISNDV EKLETDVVNDKQNSSDIKPPVFQNGVLRTNCIDCLDRTNVAQYAYGMMALGRQLHAMG FTESQTIDQNSPLADDLMGVYETMGDTLALQYGGSAAHNKIFCQRRGQWKAATQSQEF FRTLQRYYSNAYMDAVKQSAINLFLGHFQPQQGKPALWELDSDQHYSVGRHGPNHFNE NDRSLFKRSLSDGNILCGTDSPLAASNVGHHQPLSENTGATHGLSGSTPEMPTCEISY SRFTPRMSCRQLFGDVEKDHFLESNRICYDENGDECNCTNFDMDWLSSSGNSCDDDIY DRSTTGLSSENIGAELKIDMTTSPSESGSSIKGGDRTASDLTCDGILDEFSESFVNWV THGDMLIPLQFTSK" mobile_element complement(21404855..21404972) /note="source:scaffold_1_CACTA_0016 6355 6464" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21404887..21404980) /note="source:CACAO_M_S_E16386_F9_scaffold_2 2049 2141" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21406593..21409163 /note="source:CACAO_M_E49259_F74_scaffold_6 1 2571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21411317..21411380 /note="source:CACAO_M_S_E4863_F51_scaffold_1 5667 5732" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21413195..21414457 /locus_tag="TCM_029224" /note="dbxref CacaoGD:Thecc1EG029224" mRNA 21413195..21414457 /locus_tag="TCM_029224" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.36 coverage" CDS 21413292..21413537 /locus_tag="TCM_029224" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27362.1" /translation="MLRRNEGLVFLSFLMDQYSTWGFPIIYGLKLEKQMVGLNQALVL GRCEPKFKLLKSENNEQQRHSTNMCNYDDQGNNHPYI" gene complement(21413692..21414686) /locus_tag="TCM_029225" /note="dbxref CacaoGD:Thecc1EG029225" mRNA complement(join(21413692..21413909,21413987..21414074, 21414141..21414686)) /locus_tag="TCM_029225" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(21413835..21413909,21413987..21414074, 21414141..21414460)) /locus_tag="TCM_029225" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27363.1" /translation="MNKLQCIFHFDVNFRKYTKKGGRKFGVLAMGIGFSAIHEINQEM QVSPFQSAQHYQNCRMQHFLKFFQELNVQLEGYRYAKQDINVTATEILSNPEIYGRSC GIFFLFEGGSYSMLRHWPVQKKFQLWGTEGSLERIAELLWSGTANNTGPYNLKALFEA " gene complement(21415336..21422111) /locus_tag="TCM_029226" /note="dbxref CacaoGD:Thecc1EG029226" mRNA complement(join(21415336..21415934,21416063..21416318, 21416412..21416642,21416851..21416972,21417048..21417226, 21419076..21419196,21420161..21420250,21420882..21421004, 21421095..21421175,21421777..21422111)) /locus_tag="TCM_029226" /product="GDSL-motif lipase 2" /inference="alignment:exonerate- protein:2:ricco:27585.m000151" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029227t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016687001" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc2872t1" CDS complement(join(21415699..21415934,21416063..21416318, 21416412..21416642,21416851..21416972,21417048..21417226, 21419076..21419196,21420161..21420250,21420882..21421004, 21421095..21421175,21421777..21421810)) /locus_tag="TCM_029226" /note="paralog of Thecc1EG029227t1" /codon_start=1 /product="GDSL-motif lipase 2" /protein_id="EOY27364.1" /db_xref="Phytozome:GSVIVT01016687001" /db_xref="TAIR:AT5G40990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXR8" /translation="MRRTPKSQEASGKLLSIWGDLQICHKRFSDGRKVPDFIAEYAKL PLIPPYLQPNNHQFTSGVNFASAGAGALTDTNQRKCAEYPTRRIEIRKEDIKVAATEI LSNPEIHGLKDVVGAGNLKQRIVKQKIQVAAKIRVSIRSGTVLIIPTSSSLPKNHVAL FILGDSLFDSGNNNYIDTIARANFWPYGETFFKYPTGRFSDGRLIPDFIAEYANLPLI QPYLQPGNHQFTYGVNFASAGAGALAETAQGFVIDLKTQLSYFKNVTKMLRQKLGDAE AKTLFSKAVYLINIGANDILSPFTTNSSVFQSLSKEEYVGMVIGNITDTIKEIYKKGG RKFGLSNLGALGCIPGMKVLVPGITGSCFEEATELAKLHNAALSKALQELAIKLEGFK YAKHDIYTSSSERTNNPEKYGFKEAEIACCGSGPYRGIDSCGGIRVVTEYELCADPSE YWFFDSGHLTEKAYKQLAELMWSGTPNITGPYNLKALFEA" mobile_element complement(21419477..21419575) /note="source:scaffold_4_CACTA_0505 16540 16633" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21419867..21419955 /note="source:INTACT790_F336_scaffold_10-int 6496 6585" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21420037..21420109) /note="source:scaffold_7_CACTA_0779 2934 3006" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21421973..21422068) /note="source:CACAO_Again_on_S_E203_scaffold_6 949 1018" /mobile_element_type="transposon:TIR/hAT" gene complement(21422123..21426727) /locus_tag="TCM_029227" /note="dbxref CacaoGD:Thecc1EG029227" mRNA complement(join(21422123..21422184,21423564..21423833, 21423992..21424247,21424351..21424581,21424796..21424917, 21424990..21425051,21425311..21425399,21426349..21426727)) /locus_tag="TCM_029227" /product="GDSL-motif lipase 2, putative" /inference="alignment:exonerate- protein:2:TAIR:AT5G40990.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029226t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016687001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc2872t2" mobile_element 21422151..21422537 /note="source:CACAO_on_SS_E42_scaffold_2 24131 24523" /mobile_element_type="transposon:TIR/Mutator" CDS complement(join(21423598..21423833,21423992..21424247, 21424351..21424581,21424796..21424917,21424990..21425051, 21425311..21425399,21426349..21426432)) /locus_tag="TCM_029227" /note="paralog of Thecc1EG029226t1" /codon_start=1 /product="GDSL-motif lipase 2, putative" /protein_id="EOY27365.1" /db_xref="Phytozome:GSVIVT01016687001" /db_xref="TAIR:AT5G40990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXR8" /translation="MAEESVLYVPGNFSSANVIWLKLLQAKKTAPFFPASSRLILGRC KKLVVSHRTEFCVRNLFKYPTGRFSDGRIIPDFIAEYANLPLIPPYLQPGNHQFIYGV NFASAGAGALAESNQGLVIDLKTQLSNFKNVTKLLGKKLGDAQAKTLFSKAVYLINIG GNDYMSPFTTNSSVLQSLSKEEYVGMVIGNLTDTIKEIYKKGGRKFGLLNLGPLGCAP IMKVFVPGNTGSCFEEATELAKVHNAALSKALQELKIKLEGFKYAKHDFNISSSERLN NPEKYGFKEAEIACCGSGPYRGIFSCGGKRGVTDYELCADPSEYLFFDASHISDKANK QIAELMWRGTPNITGPYNLEALFEA" mobile_element 21426478..21426593 /note="source:scaffold_7_CACTA_0795 2943 3028" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21426569..21426679 /note="source:scaffold_9_CACTA_0942 5256 5362" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21428108..21428841) /note="source:scaffold_10_CACTA_0130 8883 9606" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21428591..21428925 /note="source:CACAO_on_E181_scaffold_6 783 1121" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(21428627..21429059) /note="source:CACAO_on_E238_scaffold_8 1938 2372" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(21428839..21429516) /note="source:scaffold_10_CACTA_0130 8380 9105" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21429513..21429847) /note="source:scaffold_10_CACTA_0130 6245 6572" /mobile_element_type="transposon:TIR/CACTA" gene complement(21433454..21437046) /locus_tag="TCM_029229" /note="dbxref CacaoGD:Thecc1EG029229" mRNA complement(join(21433454..21434157,21435035..21435290, 21435474..21435704,21436416..21436537,21436685..21437046)) /locus_tag="TCM_029229" /product="GDSL-motif lipase 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s06910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029226t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016685001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1745t3" CDS complement(join(21433913..21434157,21435035..21435290, 21435474..21435704,21436416..21436537,21436685..21436955)) /locus_tag="TCM_029229" /note="paralog of Thecc1EG029226t1" /codon_start=1 /product="GDSL-motif lipase 5" /protein_id="EOY27366.1" /db_xref="Phytozome:GSVIVT01016685001" /db_xref="TAIR:AT1G53920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXR9" /translation="MARLSFLFFILFLHIALTATRCRGKSQLPEKHARAAVPFFLFGD SFLDVGNNNYINTSTLDQANFWPYGETYFKFPTGRFSDGRLVSDFIAKHANLPLIPPF LQPGFRQYYLGVNFASAGAGALAETFQGFVIDLKTQLSYYSKVESWLRQKLGNDEAKM TISRAVYLFSIGSNDYMSPFLTNSTILNNYPDSTYVGMVIGNLTTTIKEIYTRGGRKF AFINLPDLGCVPGMRIIKSENNGSCLEEVTSLANLHNKALSKLLFDLEKRLKGFKYSL FDFNSNLRQRMHHPSKYGFKEGEAACCGTGQYRGVFSCGGKRKVKEFQLCKDPNDYVF WDSFHLTEKIYKQLADQMWSGTSNSRDVGPYNLRKLFRIN" gene complement(21439798..21441487) /locus_tag="TCM_029230" /note="dbxref CacaoGD:Thecc1EG029230" mRNA complement(join(21439798..21440090,21440204..21440293, 21440777..21441487)) /locus_tag="TCM_029230" /product="Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative" /inference="alignment:exonerate- protein:2:ricco:27585.m000147" /inference="similar to AA sequence:ricco:27585.m000147" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc2508t1_C2" CDS complement(join(21440028..21440090,21440204..21440293, 21440777..21441334)) /locus_tag="TCM_029230" /note="dbxref ricco:27585.m000147" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative" /protein_id="EOY27367.1" /translation="MNAAMPDLACLCFQQQSKQKRFLRRCCFFLSVNLLVIVATVGVG GLTVVFVLKPQKPVFSIQTIRLDAYKLNVYSNSTLFVSSVASLILNASNPNKIGLSYS PSRFQLYLEGLPIAAIRVPRFYQPAHSNNVSLRTRVLVSCVNVSQVMGGGWLQDQQGQ NIIPMKLLGDIKVNLHILHLTLPKIKVALDCDISFEYSQLAFLNEAYSNKAAKNLFAS FSNDSKSFLKQCALAIYI" gene complement(21443149..21446742) /locus_tag="TCM_029232" /note="dbxref CacaoGD:Thecc1EG029232" mRNA complement(join(21443149..21443434,21443574..21444509, 21445839..21446418,21446716..21446742)) /locus_tag="TCM_029232" /product="Transcription factor JERF1, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05448" /inference="similar to AA sequence:frave:gene05448" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03680t00001_C1" mRNA complement(join(21443151..21443434,21443570..21444509, 21445839..21446255)) /locus_tag="TCM_029232" /product="Transcription factor JERF1, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05448" /inference="similar to AA sequence:frave:gene05448" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00190t00001; alternateUTRof:Thecc1EG029232t1; inference alignment:Newbler:10:TSA:cgbaB_g03680t00001_C1" mRNA complement(join(21443356..21444509,21445839..21446255)) /locus_tag="TCM_029232" /product="Transcription factor JERF1, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05448" /inference="similar to AA sequence:frave:gene05448" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00190t00002; alternateUTRof:Thecc1EG029232t1; inference alignment:Newbler:10:TSA:cgbaB_g03680t00001_C1" mRNA complement(join(21443557..21444509,21445839..21446413)) /locus_tag="TCM_029232" /product="Transcription factor JERF1, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05448" /inference="similar to AA sequence:frave:gene05448" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8608t4; alternateUTRof:Thecc1EG029232t1; inference alignment:Newbler:10:TSA:cgbaB_g03680t00001_C1" CDS complement(join(21443617..21444509,21445839..21446127)) /locus_tag="TCM_029232" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene05448" /codon_start=1 /product="Transcription factor JERF1, putative isoform 1" /protein_id="EOY27368.1" /db_xref="TAIR:AT1G53910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LGR9" /translation="MCGGAIISDLIPPTRTRRLTADYLWPDLTKSGSKKRSGKRYSKP VIDLDDDFEADFQEFKDEETDADDFDDVDDVLADVKPFALSATKKPASAASGGSNSVK SVEFNGQAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARA YDAEARRIRGKKAKVNFPDEAPRTSPKRAVKANSQKSLSRSNLSPVQPNLDQNFNYLS KPEQDYFDTMGFVEEKPPMDQFAYVDPPHVSEDVGLKPFAQSDNASLYFNSDQGSNSF DCSDFGWGEQGAKTPEISSILEASIESDEFVEDANPKKKLKPSSDNVTPIEDNSAKSL SDELLALDNQMKYFQMPFIEGNWDASIDAFLNGDATQDGGNPMDLWSFDDFPAMAEGV F" CDS complement(join(21443617..21444509,21445839..21446127)) /locus_tag="TCM_029232" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene05448" /codon_start=1 /product="Transcription factor JERF1, putative isoform 1" /protein_id="EOY27369.1" /db_xref="TAIR:AT1G53910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LGR9" /translation="MCGGAIISDLIPPTRTRRLTADYLWPDLTKSGSKKRSGKRYSKP VIDLDDDFEADFQEFKDEETDADDFDDVDDVLADVKPFALSATKKPASAASGGSNSVK SVEFNGQAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARA YDAEARRIRGKKAKVNFPDEAPRTSPKRAVKANSQKSLSRSNLSPVQPNLDQNFNYLS KPEQDYFDTMGFVEEKPPMDQFAYVDPPHVSEDVGLKPFAQSDNASLYFNSDQGSNSF DCSDFGWGEQGAKTPEISSILEASIESDEFVEDANPKKKLKPSSDNVTPIEDNSAKSL SDELLALDNQMKYFQMPFIEGNWDASIDAFLNGDATQDGGNPMDLWSFDDFPAMAEGV F" CDS complement(join(21443617..21444509,21445839..21446127)) /locus_tag="TCM_029232" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene05448" /codon_start=1 /product="Transcription factor JERF1, putative isoform 1" /protein_id="EOY27370.1" /db_xref="TAIR:AT1G53910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LGR9" /translation="MCGGAIISDLIPPTRTRRLTADYLWPDLTKSGSKKRSGKRYSKP VIDLDDDFEADFQEFKDEETDADDFDDVDDVLADVKPFALSATKKPASAASGGSNSVK SVEFNGQAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARA YDAEARRIRGKKAKVNFPDEAPRTSPKRAVKANSQKSLSRSNLSPVQPNLDQNFNYLS KPEQDYFDTMGFVEEKPPMDQFAYVDPPHVSEDVGLKPFAQSDNASLYFNSDQGSNSF DCSDFGWGEQGAKTPEISSILEASIESDEFVEDANPKKKLKPSSDNVTPIEDNSAKSL SDELLALDNQMKYFQMPFIEGNWDASIDAFLNGDATQDGGNPMDLWSFDDFPAMAEGV F" CDS complement(join(21443617..21444509,21445839..21446127)) /locus_tag="TCM_029232" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene05448" /codon_start=1 /product="Transcription factor JERF1, putative isoform 1" /protein_id="EOY27371.1" /db_xref="TAIR:AT1G53910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LGR9" /translation="MCGGAIISDLIPPTRTRRLTADYLWPDLTKSGSKKRSGKRYSKP VIDLDDDFEADFQEFKDEETDADDFDDVDDVLADVKPFALSATKKPASAASGGSNSVK SVEFNGQAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARA YDAEARRIRGKKAKVNFPDEAPRTSPKRAVKANSQKSLSRSNLSPVQPNLDQNFNYLS KPEQDYFDTMGFVEEKPPMDQFAYVDPPHVSEDVGLKPFAQSDNASLYFNSDQGSNSF DCSDFGWGEQGAKTPEISSILEASIESDEFVEDANPKKKLKPSSDNVTPIEDNSAKSL SDELLALDNQMKYFQMPFIEGNWDASIDAFLNGDATQDGGNPMDLWSFDDFPAMAEGV F" mobile_element complement(21451304..21451871) /note="source:CACAO_on_E169_scaffold_5 1 596" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(21455725..21458909) /locus_tag="TCM_029233" /note="dbxref CacaoGD:Thecc1EG029233" mRNA complement(21455725..21458909) /locus_tag="TCM_029233" /product="Subtilase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006646t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16390.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8649t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8649t1" CDS complement(21456231..21458549) /locus_tag="TCM_029233" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG006646t1" /codon_start=1 /product="Subtilase family protein isoform 1" /protein_id="EOY27372.1" /db_xref="Phytozome:POPTR_0001s16390.1" /db_xref="TAIR:AT3G14240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LUM3" /translation="MGFFPFFFLSLLSLASSASRVDQKTFIVRVQHDVKPSIFTTHKH WYESSLSSVLSPSTPTQVLHVYDNVFHGFSAKLSPTEALKLQTLPHIIAVIPEQVRHV QTTRSPLFLGLKTTDSAGLLKESDFGSDLVIGVIDTGIWPERQSFNDRDLGPIPSKWK GQCVTTKDFGSSSCNKKLIGAKFFCNGYEATNGKMNETSEFRSPRDSDGHGTHTASIA AGRYVFPASTLGYAKGVAAGMAPKARLAAYKVCWNAGCYDSDILAAFDAAVADGVDVI SLSVGGVVVPYYLDAIAIGAFGAADKGIFVSASAGNGGPGGLSVTNVAPWVATVGAGT IDRDFPADVKLGNGKVVPGVSVYNGPGLSPGRMYPLVYAGTGGGDGYSSSLCMEGSLD PDFVKGKLVLCDRGINSRAAKGEVVKKAGGIGMILANGVFDGEGLVADCHVLPATAVG AANGDEIRRYIDSASKSKSPATATIVFKGTRLGVRPAPVVASFSARGPNPETPEILKP DVIAPGLNILAAWPDKVGPSGVASDKRRTEFNILSGTSMACPHVSGLAALLKAAHSEW SPAAIKSALMTTAYTVDNRGETMLDESSGNTSTVLDFGSGHVHPTKAMDPGLVYDITS MDYVDFLCNSNYTINNIQVITRRNADCSGAKRAGHIGNLNYPSFSAVFQQYGKHKMST HFLRQVTNVGDPNSVYKVTVRPPSGTLVTVEPEQLVFRRVGQKLNFLVRVQAVAVKLS PGSTNMKSGSIVWSDGKHNVTSPLIVTMQQPL" mRNA complement(join(<21456893..21458497,21458627..>21458652)) /locus_tag="TCM_029233" /product="Subtilase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006646t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16390.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is medium, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc72t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc72t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8649t1" CDS complement(join(<21456894..21458497,21458627..>21458651)) /locus_tag="TCM_029233" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG006646t1" /codon_start=1 /product="Subtilase family protein isoform 2" /protein_id="EOY27373.1" /db_xref="Phytozome:POPTR_0001s16390.1" /db_xref="TAIR:AT3G14240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LUM3" /translation="TVEISPFYSSRVDQKTFIVRVQHDVKPSIFTTHKHWYESSLSSV LSPSTPTQVLHVYDNVFHGFSAKLSPTEALKLQTLPHIIAVIPEQVRHVQTTRSPLFL GLKTTDSAGLLKESDFGSDLVIGVIDTGIWPERQSFNDRDLGPIPSKWKGQCVTTKDF GSSSCNKKLIGAKFFCNGYEATNGKMNETSEFRSPRDSDGHGTHTASIAAGRYVFPAS TLGYAKGVAAGMAPKARLAAYKVCWNAGCYDSDILAAFDAAVADGVDVISLSVGGVVV PYYLDAIAIGAFGAADKGIFVSASAGNGGPGGLSVTNVAPWVATVGAGTIDRDFPADV KLGNGKVVPGVSVYNGPGLSPGRMYPLVYAGTGGGDGYSSSLCMEGSLDPDFVKGKLV LCDRGINSRAAKGEVVKKAGGIGMILANGVFDGEGLVADCHVLPATAVGAANGDEIRR YIDSASKSKSPATATIVFKGTRLGVRPAPVVASFSARGPNPETPEILKPDVIAPGLNI LAAWPDKVGPSGVASDKRRTEFNILSGTSMACPHV" gene 21463602..21464392 /locus_tag="TCM_029234" /note="dbxref CacaoGD:Thecc1EG029234" mRNA 21463602..21464392 /locus_tag="TCM_029234" /product="Mads box-like protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G72350.1" /inference="similar to AA sequence:ricco:27866.m000233" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1484t1" CDS 21463688..21464212 /locus_tag="TCM_029234" /note="dbxref ricco:27866.m000233" /codon_start=1 /product="Mads box-like protein" /protein_id="EOY27374.1" /db_xref="TAIR:AT1G72350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T2I3" /translation="MENASNTTDATKTKKSRGRQRIEIKKLEDESKRQVTFSKRRKGL FNKATEVSTLCGAEVAILALSKSGRVYTTDGVDVVLDRYVADSSDSNPLPKQKEVEED NAGFWWDQPIDNLTLGELVEYTMALNDLRETAAARLEELNIQNSTHLWPFVADEDVSE ADFVHQFMVERNYY" gene 21464859..21465353 /locus_tag="TCM_029235" /note="dbxref CacaoGD:Thecc1EG029235" mRNA 21464859..21465353 /locus_tag="TCM_029235" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29912.m005399.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037699t1" /inference="similar to AA sequence:ricco:29912.m005399" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1839t1" CDS 21464894..21465298 /locus_tag="TCM_029235" /note="dbxref ricco:29912.m005399; paralog of Thecc1EG037699t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27375.1" /translation="MCCCKDLSEESEGSDVNLVIPVEDLVSIWMDTNANSQSFLPFLG DEICRVISEREINANYLAGVAMVEAFLLKLCLGLRLGTEGMVLEKELRSWAVALISSF HNFYFFEILVRMLLQPALPVTSLLVSLLCLDI" gene complement(21466481..21468298) /locus_tag="TCM_029236" /note="dbxref CacaoGD:Thecc1EG029236" mRNA complement(join(21466481..21466929,21467007..21467451, 21467680..21467901,21468266..21468298)) /locus_tag="TCM_029236" /product="RING/U-box superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g23590.1" /inference="similar to AA sequence:frave:gene05452" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc3785t1" CDS complement(join(21466697..21466929,21467007..21467451, 21467680..21467901,21468266..21468271)) /locus_tag="TCM_029236" /note="dbxref frave:gene05452" /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="EOY27376.1" /db_xref="TAIR:AT3G14250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P575" /translation="MVVSTVESSRKRALKKLESLRKSVTAACSVERNKTQTPRYLLKS MSKENKKPPIAVNNQSSVISTGRKPGAKRVKRHVNSTIFLFAILFTADSGNLLSDDFY FSALNDDEEVFPLSDEKYTFELQLQEVLMSSAISSRVPTGLTDWQMFQHFNSRKSSHK GKEKETGESSNSQTQGRLCLICMDVKPTEEIFTSNGCTHLFGNFVAVKIQENILVIKC PELNCKVIDFGSQKFYCPFQDCSAMFVDDGGHHVVESECPNCHRLFSAKCKVAWHAGI SCSEFQNLSEDERASEDIMIMELDK" mobile_element 21468281..21468465 /note="source:scaffold_1_CACTA_0016 1407 1596" /mobile_element_type="transposon:TIR/CACTA" gene 21469051..21470247 /locus_tag="TCM_029237" /note="dbxref CacaoGD:Thecc1EG029237" mRNA 21469051..21470247 /locus_tag="TCM_029237" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.43 coverage" CDS 21469595..21469801 /locus_tag="TCM_029237" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27377.1" /translation="MKERKRNISEQSANSTLLLNQENKKEQEPRMKIRKGPKAKKRNK KKKSNASILTTIDVLHKIYKHFLN" gene complement(21470554..21472086) /locus_tag="TCM_029238" /note="dbxref CacaoGD:Thecc1EG029238" mRNA complement(21470554..21472086) /locus_tag="TCM_029238" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.90 coverage" CDS complement(21471393..21471677) /locus_tag="TCM_029238" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27378.1" /translation="MSGSLKFKTDGAARVDLRLAAIGGVLRDKVGTIKVTFSKQWRVT ILIEQKFLLLRRLLSFLVLPSGQAHMTLWLRVIRAMLLYEHRIQKKPHKN" gene complement(21472877..21486361) /locus_tag="TCM_029239" /note="dbxref CacaoGD:Thecc1EG029239" mRNA complement(join(21472877..21473834,21474016..21474448, 21486300..21486361)) /locus_tag="TCM_029239" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016679001" /inference="similar to AA sequence:Phytozome:GSVIVT01016679001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14510t00001" CDS complement(join(21473621..21473834,21474016..21474320)) /locus_tag="TCM_029239" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27379.1" /db_xref="Phytozome:GSVIVT01016679001" /db_xref="TAIR:AT1G53903.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXY7" /translation="MALKLRSPFKLEGESEEGKNKPTYASSTKSSPVVVGLRILTQIS QGKSNVVVKSALKFRPPTSKKHHGHPDGGSPADQSCFLKSCHLCNKNLSLDKEVYMYR GDQGYCSIECRDRQIVLDEMKELEVSTKQMMASYRNCSSSGRRETSVLLEDLRRRNKT PHQIRKHWAIVS" mobile_element complement(21475261..21475941) /note="source:INTACT687_F13_scaffold_3-int 1298 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21475933..21476742 /note="source:CACAO_MITE_S250_scaffold_10 115 946" /mobile_element_type="transposon:TIR/MITE" mobile_element 21479035..21480241 /note="source:CACAO_PIF_E144_scaffold_10 1203 2391" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(21480254..21480310) /note="source:CACAO_M_E52765_F10_scaffold_8 1770 1830" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21481772..21483280) /note="source:scaffold_1_CACTA_0016 13519 15018" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21483276..21483340) /note="source:CACAO_M_S_E89272_F5_scaffold_8 10936 11000" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21486460..21487153 /locus_tag="TCM_029240" /note="dbxref CacaoGD:Thecc1EG029240" mRNA join(21486460..21486573,21486771..21487153) /locus_tag="TCM_029240" /product="Senescence-associated gene 21, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g01570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016756t1" /inference="similar to AA sequence:ricco:29308.m000187" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc440t8_C2" CDS join(21486536..21486573,21486771..21486990) /locus_tag="TCM_029240" /note="dbxref ricco:29308.m000187; paralog of Thecc1EG016756t1" /codon_start=1 /product="Senescence-associated gene 21, putative" /protein_id="EOY27380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T3Y6" /translation="MAQLSVKSFQLLSRRSYAVAAENMKVQAVASVTRNATDLRAEVL AEQKETFWMRDPKTGNWIPENHFGDIDVAELREKFLSKKQK" gene complement(21487287..21490925) /locus_tag="TCM_029241" /note="dbxref CacaoGD:Thecc1EG029241" mRNA complement(join(21487287..21487760,21487915..21488156, 21488367..21488508,21488634..21488786,21490234..21490925)) /locus_tag="TCM_029241" /product="Eukaryotic translation initiation factor 2B family protein" /inference="alignment:exonerate- protein:2:ricco:29308.m000186" /inference="similar to AA sequence:Phytozome:GSVIVT01016675001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16290t1" CDS complement(join(21487554..21487760,21487915..21488156, 21488367..21488508,21488634..21488786,21490234..21490704)) /locus_tag="TCM_029241" /codon_start=1 /product="Eukaryotic translation initiation factor 2B family protein" /protein_id="EOY27381.1" /db_xref="Phytozome:GSVIVT01016675001" /db_xref="TAIR:AT1G72340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E1Z6D8" /translation="MWWRSPSFILDREQQQQNDSVPPNPESLFLSSPPPSMADSLQNP KSNISAYYQTRAAHHAVVTSDWLAQAQAAVGSHTDDEESSGIDGRAAATDEDGGGGGG KAFSVIDEFNSWRKQPDLAEAVAAIFALAAVIRASQATTMMELEIELKKASDSLKSWD TTSISLTAGCDLFMRYVTRTSALEYEDFNSAKSRLIERAEKFGEISCKARRIIAMLSQ DFIFDGCTILVHGFSRVVLEVLKTAAQNKKLFRVFCTEGRPDRTGLRLSNELAKLDVP VKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAES YKFARLYPLDQKDMGPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTP SVVSDELIQLYL" gene complement(21490973..21492482) /locus_tag="TCM_029242" /note="dbxref CacaoGD:Thecc1EG029242" mRNA complement(join(21490973..21491472,21491581..21491823, 21491920..21492482)) /locus_tag="TCM_029242" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29308.m000184" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016225t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s06980.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc3783t1" CDS complement(join(21491338..21491472,21491581..21491823, 21491920..21492267)) /locus_tag="TCM_029242" /note="paralog of Thecc1EG016225t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27382.1" /db_xref="Phytozome:POPTR_0003s06980.1" /db_xref="TAIR:AT3G14260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C674" /translation="MSLLINILVSSVPHKIALKNVYKTSRGLRQKIQTFFQMAKIHPQ VPHASLVPVPFTSKQETFTIWMKSLILSTKGCTVFDSNGQIVYRVDNYNCKCSDEVYL MDLTGKVLFTIRRKKFKLVRFWEGYRSSDGTVNDEDKRPAFRVRKSFGILGGDSLCDA IVWLDKDQQCHYYRIESCAGKSSTFKIVDKFGRLIAEVKRKQSKCGISLGEDVLAMVV EPHIDHSLIMGLVVVYSLVNCKM" mobile_element 21493597..21495616 /note="source:scaffold_5_CACTA_0615 181 2253" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21497668..21500278 /note="source:CACAO_PIF_E465_scaffold_115 3153 5737" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(21502359..21502832) /note="source:scaffold_7_CACTA_0789 11241 11719" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21502833..21502898) /note="source:CACAO_M_E48452_F5_scaffold_6 14284 14825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21503289..21503547 /note="source:INTACT409F_F47_scaffold_4-int 16256 16549" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21503549..21505046 /note="source:INTACT160_F4_scaffold_7-int 13213 14683" /mobile_element_type="retrotransposon:LTR/Copia" gene 21506856..21518040 /locus_tag="TCM_029244" /note="dbxref CacaoGD:Thecc1EG029244" mRNA join(21506856..21507426,21508288..21509013, 21509341..21510084,21510929..21511082,21511211..21511555, 21512029..21512919,21513004..21513335,21513738..21513861, 21513953..21514123,21514677..21516221,21517064..21517330, 21517483..21518040) /locus_tag="TCM_029244" /product="Phosphatidylinositol-4-phosphate 5-kinase family protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05459" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037451t4" /inference="similar to AA sequence:Phytozome:POPTR_0003s06990.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1058t6" mRNA join(21507507..21509013,21509341..21510084, 21510929..21511082,21511211..21511555,21512029..21512919, 21513004..21513335,21513738..21513861,21513953..21514123, 21514677..21516221,21517064..21517508) /locus_tag="TCM_029244" /product="Phosphatidylinositol-4-phosphate 5-kinase family protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene05459" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037451t5" /inference="similar to AA sequence:Phytozome:POPTR_0003s06990.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1012t3; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1058t6" mRNA join(21507507..21509013,21509341..21510084, 21510929..21511082,21511211..21511555,21512029..21512919, 21513004..21513335,21513738..21513861,21513953..21514123, 21514677..21516221,21517483..>21517508) /locus_tag="TCM_029244" /product="Phosphatidylinositol-4-phosphate 5-kinase family protein, putative isoform 3" /inference="alignment:exonerate-protein:2:frave:gene05459" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037451t2" /inference="similar to AA sequence:Phytozome:POPTR_0003s06990.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1012t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1058t6" CDS join(21508394..21509013,21509341..21510084, 21510929..21511082,21511211..21511555,21512029..21512919, 21513004..21513335,21513738..21513861,21513953..21514123, 21514677..21516221,21517064..21517330,21517483..21517806) /locus_tag="TCM_029244" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037451t4" /codon_start=1 /product="Phosphatidylinositol-4-phosphate 5-kinase family protein, putative isoform 1" /protein_id="EOY27383.1" /db_xref="Phytozome:POPTR_0003s06990.1" /db_xref="TAIR:AT3G14270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXN6" /translation="MDAPNKTFSELVSLLKSWLPWRSEPANVSRDFWMPDHSCRVCYD CDSQFTLFNRRHHCRLCGRVFCAKCTANSVPAPSNDTRLPQEEREKIRVCNYCFKQWE QGITSIDDGVQVPNQELSTSPSATSFISTKSSGTANTSSFTFGSKPYPAGPYQRVQQR PILSPHQLSAMNTSMDRPGKRAPERSNDLVMDAEDPSSNHYGFSLNRSDDEDDEYSLY LSDSETKHFCQENGYYSPVDFDEMSNDDGSHKFHPDSENIDSKILSSSPINNGFPSTG LEGISQLVKKDEREIGEECEASSSLYAAEDLDAEAVDFENNGLLWLPPEPEDEEDERE AALFDDDDDDGNASGEWGYLRNSSSFGSGEYRTRDRSSEEHKKAMKNIVDGHFRALVA QLLQVENLPVGDENDEESWLEIITALSWEAATLLKPDTSKGGGMDPGGYVKVKCIASG RRCESMVVKGVVCKKNVAHRRMTSKIEKPRLLILGGALEYQRVSNLLSSFDTLLQQEM DHLKMAVAKIHAHQPNILLVEKSVSRFAQDYLLEKDISLVLNIKRPLLERIARCTGAQ IIPSIDHLSTQKLGYCEKFHVERFMEDLGSAGQGGKKLFKTLMYFEGCPKPLGCTILL RGANGDELKKVKHVVQYGIFAAYHLALETSFLADEGASLPEFPLNSPITVALLDKPSS IARSISTVPGFLLPANKKSPEPQHSSELRRANSSLTLDLSSSIMSHNIQKIEETPPSC LPNGTSLWSAQPNFIESTAHLSSASEKVVSDTLFKRYEMGPKESSMVGVFTDKSELAV TNNRLTFSIVGSLESLGQFSMVQIEQENHSAAVEIQPGGSEASSVQQDSKNHKNHSEE PKPLKEEFPPSPSDNQSILVSLSSRCVWKGTVCERSHLFRIKYYGSFDKPLGRFLRDH LFDQSYRCHSCDMPSEAHVHCYTHRQGTLTISVKKVPEIFLPGEREGKIWMWHRCLRC PRTNGFPPATQRIVMSDAAWGLSFGKFLELSFSNHAAASRVASCGHSLHRDCLRFYGF GRMVACFRYASVDVHSVYLPPPKLDFDFQNQEWIRKETDKVVDRAELLFSEVLNSLSQ ISGKKLGTGAPNNVAKTPELRHQITELQGILQKEKLEFEESLQKALKREVRKGQPVID ILEINRLRRQLLFQSYMWDHRLVFAANLENYGLQDGFSNSISGHEEKSPTDGEKFKDM DLLELGKGSECSDSAIVEAKLDRDFDQRELNGNTNQSDVIHQGPDMSENSNLGNKDYG NLSASQSMYDRSDCEKPAANVRRVLSEGQFPSVENLSDTLDAAWTGEIQRASVIPKNT SCSLSDSAAAADIAAIGAATEGLDLEDHSEEILGLKVLHSLSPALSTKGSENMEDSVS WLRMPFLSFYRSLNKNFLGSASKLDTFSEYDPVYVSSFRESELQGGASLLLPVGVNDT VIPVFDDEPTSMISYALASPEYHFQLSDDGDRPKDSGDLMASVPLSDSVNSQLLHSVD EMTLDSHRSLGSTDDITGSRSSLIMDPLYCTKALHVRVSFGDDGSVDKVKYTVTCYFA KRFEALRRICCPSELDFIRSLSRCKKWGAQGGKSNVFFAKTLDDRFIIKQVTKTELES FIKFAPGYFKYLSESISSGSPTCLAKILGIYQVTAKHLKGGKESRMDVLVMENLMFRR SVTRLYDLKGSSRSRYNPDSSGSNKVLLDQNLIESMPTCPIFVSNKAKRLLERAVWND TAFLASCDVMDYSLLVGVDEEKHELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNE SPTVISPKQYKKRFRKAMTTYFLMIPDQWSPPIISSKSQSDIGEENGQGGSSVK" CDS join(21508394..21509013,21509341..21510084, 21510929..21511082,21511211..21511555,21512029..21512919, 21513004..21513335,21513738..21513861,21513953..21514123, 21514677..21516221,21517483..>21517506) /locus_tag="TCM_029244" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG037451t2" /codon_start=1 /product="Phosphatidylinositol-4-phosphate 5-kinase family protein, putative isoform 3" /protein_id="EOY27385.1" /db_xref="Phytozome:POPTR_0003s06990.1" /db_xref="TAIR:AT3G14270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXN6" /translation="MDAPNKTFSELVSLLKSWLPWRSEPANVSRDFWMPDHSCRVCYD CDSQFTLFNRRHHCRLCGRVFCAKCTANSVPAPSNDTRLPQEEREKIRVCNYCFKQWE QGITSIDDGVQVPNQELSTSPSATSFISTKSSGTANTSSFTFGSKPYPAGPYQRVQQR PILSPHQLSAMNTSMDRPGKRAPERSNDLVMDAEDPSSNHYGFSLNRSDDEDDEYSLY LSDSETKHFCQENGYYSPVDFDEMSNDDGSHKFHPDSENIDSKILSSSPINNGFPSTG LEGISQLVKKDEREIGEECEASSSLYAAEDLDAEAVDFENNGLLWLPPEPEDEEDERE AALFDDDDDDGNASGEWGYLRNSSSFGSGEYRTRDRSSEEHKKAMKNIVDGHFRALVA QLLQVENLPVGDENDEESWLEIITALSWEAATLLKPDTSKGGGMDPGGYVKVKCIASG RRCESMVVKGVVCKKNVAHRRMTSKIEKPRLLILGGALEYQRVSNLLSSFDTLLQQEM DHLKMAVAKIHAHQPNILLVEKSVSRFAQDYLLEKDISLVLNIKRPLLERIARCTGAQ IIPSIDHLSTQKLGYCEKFHVERFMEDLGSAGQGGKKLFKTLMYFEGCPKPLGCTILL RGANGDELKKVKHVVQYGIFAAYHLALETSFLADEGASLPEFPLNSPITVALLDKPSS IARSISTVPGFLLPANKKSPEPQHSSELRRANSSLTLDLSSSIMSHNIQKIEETPPSC LPNGTSLWSAQPNFIESTAHLSSASEKVVSDTLFKRYEMGPKESSMVGVFTDKSELAV TNNRLTFSIVGSLESLGQFSMVQIEQENHSAAVEIQPGGSEASSVQQDSKNHKNHSEE PKPLKEEFPPSPSDNQSILVSLSSRCVWKGTVCERSHLFRIKYYGSFDKPLGRFLRDH LFDQSYRCHSCDMPSEAHVHCYTHRQGTLTISVKKVPEIFLPGEREGKIWMWHRCLRC PRTNGFPPATQRIVMSDAAWGLSFGKFLELSFSNHAAASRVASCGHSLHRDCLRFYGF GRMVACFRYASVDVHSVYLPPPKLDFDFQNQEWIRKETDKVVDRAELLFSEVLNSLSQ ISGKKLGTGAPNNVAKTPELRHQITELQGILQKEKLEFEESLQKALKREVRKGQPVID ILEINRLRRQLLFQSYMWDHRLVFAANLENYGLQDGFSNSISGHEEKSPTDGEKFKDM DLLELGKGSECSDSAIVEAKLDRDFDQRELNGNTNQSDVIHQGPDMSENSNLGNKDYG NLSASQSMYDRSDCEKPAANVRRVLSEGQFPSVENLSDTLDAAWTGEIQRASVIPKNT SCSLSDSAAAADIAAIGAATEGLDLEDHSEEILGLKVLHSLSPALSTKGSENMEDSVS WLRMPFLSFYRSLNKNFLGSASKLDTFSEYDPVYVSSFRESELQGGASLLLPVGVNDT VIPVFDDEPTSMISYALASPEYHFQLSDDGDRPKDSGDLMASVPLSDSVNSQLLHSVD EMTLDSHRSLGSTDDITGSRSSLIMDPLYCTKALHVRVSFGDDGSVDKVKYTVTCYFA KRFEALRRICCPSELDFIRSLSRCKKWGAQGGKSNVFFAKTLDDRFIIKQVTKTELES FIKFAPGYFKYLSESISSGSPTCLAKILGIYQSCDVMDYS" CDS join(21508394..21509013,21509341..21510084, 21510929..21511082,21511211..21511555,21512029..21512919, 21513004..21513335,21513738..21513861,21513953..21514123, 21514677..21516221,21517064..21517378) /locus_tag="TCM_029244" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037451t5" /codon_start=1 /product="Phosphatidylinositol-4-phosphate 5-kinase family protein, putative isoform 2" /protein_id="EOY27384.1" /db_xref="Phytozome:POPTR_0003s06990.1" /db_xref="TAIR:AT3G14270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXN6" /translation="MDAPNKTFSELVSLLKSWLPWRSEPANVSRDFWMPDHSCRVCYD CDSQFTLFNRRHHCRLCGRVFCAKCTANSVPAPSNDTRLPQEEREKIRVCNYCFKQWE QGITSIDDGVQVPNQELSTSPSATSFISTKSSGTANTSSFTFGSKPYPAGPYQRVQQR PILSPHQLSAMNTSMDRPGKRAPERSNDLVMDAEDPSSNHYGFSLNRSDDEDDEYSLY LSDSETKHFCQENGYYSPVDFDEMSNDDGSHKFHPDSENIDSKILSSSPINNGFPSTG LEGISQLVKKDEREIGEECEASSSLYAAEDLDAEAVDFENNGLLWLPPEPEDEEDERE AALFDDDDDDGNASGEWGYLRNSSSFGSGEYRTRDRSSEEHKKAMKNIVDGHFRALVA QLLQVENLPVGDENDEESWLEIITALSWEAATLLKPDTSKGGGMDPGGYVKVKCIASG RRCESMVVKGVVCKKNVAHRRMTSKIEKPRLLILGGALEYQRVSNLLSSFDTLLQQEM DHLKMAVAKIHAHQPNILLVEKSVSRFAQDYLLEKDISLVLNIKRPLLERIARCTGAQ IIPSIDHLSTQKLGYCEKFHVERFMEDLGSAGQGGKKLFKTLMYFEGCPKPLGCTILL RGANGDELKKVKHVVQYGIFAAYHLALETSFLADEGASLPEFPLNSPITVALLDKPSS IARSISTVPGFLLPANKKSPEPQHSSELRRANSSLTLDLSSSIMSHNIQKIEETPPSC LPNGTSLWSAQPNFIESTAHLSSASEKVVSDTLFKRYEMGPKESSMVGVFTDKSELAV TNNRLTFSIVGSLESLGQFSMVQIEQENHSAAVEIQPGGSEASSVQQDSKNHKNHSEE PKPLKEEFPPSPSDNQSILVSLSSRCVWKGTVCERSHLFRIKYYGSFDKPLGRFLRDH LFDQSYRCHSCDMPSEAHVHCYTHRQGTLTISVKKVPEIFLPGEREGKIWMWHRCLRC PRTNGFPPATQRIVMSDAAWGLSFGKFLELSFSNHAAASRVASCGHSLHRDCLRFYGF GRMVACFRYASVDVHSVYLPPPKLDFDFQNQEWIRKETDKVVDRAELLFSEVLNSLSQ ISGKKLGTGAPNNVAKTPELRHQITELQGILQKEKLEFEESLQKALKREVRKGQPVID ILEINRLRRQLLFQSYMWDHRLVFAANLENYGLQDGFSNSISGHEEKSPTDGEKFKDM DLLELGKGSECSDSAIVEAKLDRDFDQRELNGNTNQSDVIHQGPDMSENSNLGNKDYG NLSASQSMYDRSDCEKPAANVRRVLSEGQFPSVENLSDTLDAAWTGEIQRASVIPKNT SCSLSDSAAAADIAAIGAATEGLDLEDHSEEILGLKVLHSLSPALSTKGSENMEDSVS WLRMPFLSFYRSLNKNFLGSASKLDTFSEYDPVYVSSFRESELQGGASLLLPVGVNDT VIPVFDDEPTSMISYALASPEYHFQLSDDGDRPKDSGDLMASVPLSDSVNSQLLHSVD EMTLDSHRSLGSTDDITGSRSSLIMDPLYCTKALHVRVSFGDDGSVDKVKYTVTCYFA KRFEALRRICCPSELDFIRSLSRCKKWGAQGGKSNVFFAKTLDDRFIIKQVTKTELES FIKFAPGYFKYLSESISSGSPTCLAKILGIYQVTAKHLKGGKESRMDVLVMENLMFRR SVTRLYDLKGSSRSRYNPDSSGSNKVLLDQNLIESMPTCPIFVSNKAKRLLERAVWND TAFLAVSFKSVCLCPRKEGV" mobile_element complement(21511949..21512000) /note="source:CACAO_M_E12463_F12_scaffold_3 4597 4642" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21518374..21519565) /locus_tag="TCM_029245" /note="dbxref CacaoGD:Thecc1EG029245" mRNA complement(join(21518374..21518809,21518906..21519030, 21519249..21519565)) /locus_tag="TCM_029245" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07000.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16330.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16286t1" CDS complement(join(21518671..21518809,21518906..21519030, 21519249..21519500)) /locus_tag="TCM_029245" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27386.1" /db_xref="Phytozome:POPTR_0001s16330.1" /translation="MLLSYSSVSALVPFLEQAHCSSFPSVLPWSMRSISVTCSFPLHT PVPTSRPLLKHANKTVMLKHNQVPGKRASTLRIRSFSKNKVFEDQSEGVICYRDENGE IVCEGYDEGPRFPRQIHGSFCHLSDAEILDLLQDRWLQIVNGGGFSNANKGVIIVQDD SKRKDFNKFHQ" gene 21519574..21526753 /locus_tag="TCM_029246" /note="dbxref CacaoGD:Thecc1EG029246" mRNA join(21519574..21519610,21522873..21523414, 21523498..21524053,21524403..21524468,21524605..21525115, 21525192..21525273,21526376..21526753) /locus_tag="TCM_029246" /product="Remorin family protein" /inference="alignment:exonerate- protein:2:ricco:29308.m000181" /inference="similar to AA sequence:ricco:29308.m000181" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5426t2" CDS join(21523358..21523414,21523498..21524053, 21524403..21524468,21524605..21525115,21525192..21525273, 21526376..21526597) /locus_tag="TCM_029246" /note="dbxref ricco:29308.m000181" /codon_start=1 /product="Remorin family protein" /protein_id="EOY27387.1" /db_xref="TAIR:AT1G53860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N7I2" /translation="MDLASPKYFPAPPLFPSNGEPPLETTASLYGESKDNPFADTFPD PLCELNLKETSDFVKSFPMAASNNNTDNRGGGFLDVSIQRRRGVNSVTTQRRVLEAPS TPGRPVFSFSGGNFARKSFPSKWDDAEKWLISSSCHESPAHTIKPPPESSKMAKQFDN YKQQTDVFAEKSRVIEENVPKVVTSFNPTGGFGGIPGSTDVLLKDRATFSSSNEILLV ITAIHLVRNKFTDEVEPILPNFRCSEPSREGFLFRNSVCETMKDAGTEVFHGVKHKDV GTEMTPLGSSTTSRCHTPCKSSSPARHNTPANRSGPLASANSNSSNSTIDISQLQECH LAKLQLGTQYDSITSNWSSREEEEEEVSKSLRHFETGSACRKSVSDSRAAAWEEEERT KCCLRYQREEAKIQAWVNLQSAKAEAQSRKLEVKIQKMRSNLEEKLMKRMAVVHRKSE EWRAVAQQQHAEQTQRATEQAQKIMNRNNSLMSGHSSCGCFPCNNSP" gene 21526804..21531794 /locus_tag="TCM_029247" /note="dbxref CacaoGD:Thecc1EG029247" mRNA join(21526804..21527168,21528214..21528467, 21528554..21528635,21528830..21528910,21529510..21529623, 21529705..21529806,21530023..21530081,21530769..21530871, 21531106..21531171,21531276..21531794) /locus_tag="TCM_029247" /product="20S proteasome alpha subunit E2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g42650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005989t2" /inference="similar to AA sequence:Phytozome:Glyma02g01700.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:PASA:2:TSA:puevd3b028286t1a2; inference alignment:Newbler:10:TSA:cgbaL_g12625t00001" mRNA join(21526804..21527168,21528214..21528344, 21528422..21528467,21528554..21528635,21528830..21528910, 21529510..21529623,21529705..21529806,21530023..21530081, 21530769..21530871,21531106..21531171,21531276..21531762) /locus_tag="TCM_029247" /product="Proteasome subunit alpha type-5-A isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g42650.1" /inference="similar to AA sequence:Phytozome:GSVIVT01016670001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12625t00001" CDS join(21527068..21527168,21528214..21528344, 21528422..21528467,21528554..21528635,21528830..21528910, 21529510..21529623,21529705..21529806,21530023..21530081, 21530769..21530871,21531106..21531171,21531276..21531368) /locus_tag="TCM_029247" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Proteasome subunit alpha type-5-A isoform 1" /protein_id="EOY27388.1" /db_xref="Phytozome:GSVIVT01016670001" /db_xref="TAIR:AT3G14290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81149" /translation="MRIFQSRTGGDFIAYILTGDHVIEENNQLLTIKSPAQVKRSRFT LACFARSLEDLYKKHELLCLRSAALSLSDTHSQSFVRSNSNRSNMFLTRTEYDRGVNT FSPEGRLFQVEYAIEAIKLGSTAIGIKTKDGVVLAVEKRITSPLLEPSSVEKIMEIDA HIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEES MSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLT LQEAETIALSILKQVMEEKVTPNNVDIAKVAPTYHLYTPSEVEAVITRL" CDS join(21528454..21528467,21528554..21528635, 21528830..21528910,21529510..21529623,21529705..21529806, 21530023..21530081,21530769..21530871,21531106..21531171, 21531276..21531368) /locus_tag="TCM_029247" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005989t2" /codon_start=1 /product="20S proteasome alpha subunit E2 isoform 2" /protein_id="EOY27389.1" /db_xref="Phytozome:Glyma02g01700.1" /db_xref="TAIR:AT3G14290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81149" /translation="MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKD GVVLAVEKRITSPLLEPSSVEKIMEIDAHIGCAMSGLIADARTLVEHARVETQNHRFS YGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTF WQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIAKV APTYHLYTPSEVEAVITRL" gene complement(21532031..21540634) /locus_tag="TCM_029248" /note="dbxref CacaoGD:Thecc1EG029248" mRNA complement(join(21532031..21532709,21533072..21533275, 21533562..21533636,21534003..21534157,21534269..21534389, 21534511..21534585,21534667..21534804,21535077..21535187, 21535280..21535384,21535467..21535545,21536226..21536287, 21536372..21536437,21536942..21536992,21537279..21537329, 21538080..21538581,21540441..21540634)) /locus_tag="TCM_029248" /product="Alanine aminotransferase 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016669001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010479t3" /inference="similar to AA sequence:TAIR:AT1G72330.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04656t00001" CDS complement(join(21532593..21532709,21533072..21533275, 21533562..21533636,21534003..21534157,21534269..21534389, 21534511..21534585,21534667..21534804,21535077..21535187, 21535280..21535384,21535467..21535545,21536226..21536287, 21536372..21536437,21536942..21536992,21537279..21537329, 21538080..21538289)) /locus_tag="TCM_029248" /note="paralog of Thecc1EG010479t3" /codon_start=1 /product="Alanine aminotransferase 2" /protein_id="EOY27390.1" /db_xref="TAIR:AT1G72330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IDA2" /translation="MRRFVIGRARNLFETSRQNYQFQRPLLSSSQSPFRFLSSTPVAD SPSSSPSSSSSSTMAPPVTVNTINPKVLECEYAVRGEIVSLAQKLQEEIQTKPEAHPF EEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDKSETQGLFSADSIDRAWQILDQ IPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR SEKDGIFCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEVSELKKQLETARSKGIT VRALVVINPGNPTGQVLAEENQRAIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKK VSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFGADVREQIYKVASVNLCS NISGQVLASLVMSPPKVGDESYESYSAERDGILSALARRAKTLEDAFNKLEGVTCNKA EGAMYLFPRIHLPEKAIKAAQVAKTAPDAFYCRRLLSATGIVVVPGSGFGQVPGTWHF RCTILPQEEKIPAIVTHLTDFHKSFMDEFRD" misc_feature complement(join(21539210..21540265,21540441..21540642)) /locus_tag="TCM_029248" /note="Gene fragment of Thecc1EG029248t1; dbxref gnl|CacaoGD|Thecc1EG029248t1; quality class is mediumpartial-partof is thecc1eg029248t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2309t3; dbxref CacaoGD:Thecc1EG029249t1" gene complement(21540684..21544594) /locus_tag="TCM_029250" /note="dbxref CacaoGD:Thecc1EG029250" mRNA complement(join(21540684..21541817,21543325..21544594)) /locus_tag="TCM_029250" /product="Pectinesterase 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s07030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037446t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07030.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16292t2" CDS complement(join(21541138..21541817,21543325..21544405)) /locus_tag="TCM_029250" /note="paralog of Thecc1EG037446t1" /codon_start=1 /product="Pectinesterase 3" /protein_id="EOY27391.1" /db_xref="Phytozome:POPTR_0003s07030.1" /db_xref="TAIR:AT1G53840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q43111" /translation="MDSIKSFKGYGKVDELEEQAFKRKTRRRLIILIISIAVLIAVII AAVAGILIHKRSNSSSNTVPPTDLTPAASLKTVCSVTQYPTSCFSSLSSMASSNTSDP EILFKLSLEVAINELSKLSQYPSKLQAETNNTQVKSALQVCGTLFEDALDRLTDSATS LEVGQGQRLLSASKINDLKTWLSTTITDQETCLDALEELNTTKHFNATLLEEVKAAMQ NSSEYASNSLAIVAKILSLLPDFNIPIHRRLLGFQETGSEFPDWVSPTERRLLQDSNP TPNVVVAQDGSGDVLTINDAVKLVGKKNESRFVIYVKEGKYVENVILDKHQWNVMIYG DGKTKTIISGSLNFVDGTPTFATATFAVTGKGFIAKGIQFVNSAGAAKHQAVAMRSGS DRSVFYQCAFDAFQDTLYAHSNRQFYRECDILGTIDFIFGNAAVVFQNCNIQPRQPLA NQFNTITAQGKKDPNQNSGMSVQKCTLSAFGNLTANTYLGRPWKEYSTTVIMQSEIGA FLNPLGWKEWVSNVDPPSSIFYAEYKNSGPGSNVDERVKWGGYRPTLSDVDAGKFTVG TFIQGEEWLPGATVSYQPAL" gene complement(21545519..21552620) /locus_tag="TCM_029251" /note="dbxref CacaoGD:Thecc1EG029251" mRNA complement(join(21545519..21545739,21547454..21548691, 21550782..21551921)) /locus_tag="TCM_029251" /product="Pectin methylesterase 3 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29739.m003669" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037441t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400016183" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16319t1" CDS complement(join(21548000..21548691,21550782..21551838)) /locus_tag="TCM_029251" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037441t1" /codon_start=1 /product="Pectin methylesterase 3 isoform 1" /protein_id="EOY27392.1" /db_xref="Phytozome:PGSC0003DMP400016183" /db_xref="TAIR:AT3G14310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXK8" /translation="MTRIKELLTKISDSGKHISSTKKHKKVILAVFGSLVIVAAIIGI VAGVNSRNNSDETDTSHHAIVKSACSITRYPDLCFSEVAAAPAATSKKVKSKKDVIEL SLNITTTAVEHNYFKIKKLLAKKGLTEREKTALHDCLETIDETLDELHEAVEDLHEYP NKKSLTQHADDLKTLMSAAMTNQETCLDGFSHDAADKKIRKVLIDGEKYVERMCSNAL AMIKNMTDTDIANEMLKTSSNRKLKEQENGIAWPEWLSAGDRRLLQSSSVTPDVVVAA DGSGNYKTVSEAVAKAPQRSSKRYVIKIKAGVYRENVEVPKKKTNIMFLGDGRTETII TGSRNVVDGSTTFHSATVAVVGERFLARDITFQNTAGPSKHQAVALRVGADLSAFYEC DMLAYQDTLYAHSNRQFYVNCIIAGTVDFIFGNAAAVFQNCDIHARRPNSGQKNMVTA QGRTDPNQNTGIVIQKCRIGATSDLQSVRSNFPTYLGRPWKEYSRTVVMQSVISDVIH PAGWHEWSESFALRTLFYGEYQNTGAGAGTSGRVKWEGYKVITSASEAQAYSPGRFIA GGSWLSSTGFPFSLGL" mRNA complement(join(<21548249..21548691,21550782..21552055, 21552361..21552620)) /locus_tag="TCM_029251" /product="Pectin methylesterase 3 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29739.m003669" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037441t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s07040.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial3; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc293t11; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16319t1" CDS complement(join(<21548249..21548691,21550782..21551838)) /locus_tag="TCM_029251" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037441t1" /codon_start=1 /product="Pectin methylesterase 3 isoform 2" /protein_id="EOY27393.1" /db_xref="Phytozome:POPTR_0003s07040.1" /db_xref="TAIR:AT3G14310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXK8" /translation="MTRIKELLTKISDSGKHISSTKKHKKVILAVFGSLVIVAAIIGI VAGVNSRNNSDETDTSHHAIVKSACSITRYPDLCFSEVAAAPAATSKKVKSKKDVIEL SLNITTTAVEHNYFKIKKLLAKKGLTEREKTALHDCLETIDETLDELHEAVEDLHEYP NKKSLTQHADDLKTLMSAAMTNQETCLDGFSHDAADKKIRKVLIDGEKYVERMCSNAL AMIKNMTDTDIANEMLKTSSNRKLKEQENGIAWPEWLSAGDRRLLQSSSVTPDVVVAA DGSGNYKTVSEAVAKAPQRSSKRYVIKIKAGVYRENVEVPKKKTNIMFLGDGRTETII TGSRNVVDGSTTFHSATVAVVGERFLARDITFQNTAGPSKHQAVALRVGADLSAFYEC DMLAYQDTLYAHSNRQFYVNCIIAGTVDFIFGNAAAVFQNCDIHARRPNSGQKNMVTA QGRTDPNQNTGIVIQKCRIGATSDLQSVRSNFPTYLGRPWKEYSRTVVMQ" gene 21549056..21549594 /locus_tag="TCM_029252" /note="dbxref CacaoGD:Thecc1EG029252" mRNA 21549056..21549594 /locus_tag="TCM_029252" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc38t8" CDS 21549098..21549385 /locus_tag="TCM_029252" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27394.1" /translation="MNLGIRKFFYDVLIFVKRQMLYGKPALRPQQRTRPSFNRDQVKA TKYDANIRSCPNCKIIAKNVLGPSNTNSGAQIQTVKVIGMSRIVLSNSKKT" gene 21552026..21563138 /locus_tag="TCM_029253" /note="dbxref CacaoGD:Thecc1EG029253" mRNA join(21552026..21552055,21552361..21552813, 21556255..21556751,21557023..21557290,21557377..21557740, 21557972..21558274,21558864..21559031,21559776..21559919, 21560212..21560331,21560487..21560672,21561351..21561499, 21561788..21561970,21562292..21562963) /locus_tag="TCM_029253" /product="Pumilio 23, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G72320.2" /inference="similar to AA sequence:Phytozome:POPTR_0003s07060.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04297t00001" mobile_element 21555811..21555988 /note="source:CACAO_Helitron_S_E29_scaffold_3 1671 1847" /mobile_element_type="transposon:Helitron" mRNA join(21556636..21556751,21557023..21557290, 21557377..21557740,21557972..21558274,21558864..21559031, 21559776..21559919,21560212..21560331,21560487..21560672, 21561351..21561499,21561788..21561970,21562292..21563138) /locus_tag="TCM_029253" /product="Pumilio 23, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G72320.2" /inference="similar to AA sequence:Phytozome:POPTR_0003s07060.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1101t1; alternateUTRof:Thecc1EG029253t1; inference alignment:Newbler:10:TSA:cgbaB_g04297t00001" CDS join(21557142..21557290,21557377..21557740, 21557972..21558274,21558864..21559031,21559776..21559919, 21560212..21560331,21560487..21560672,21561351..21561499, 21561788..21561970,21562292..21562697) /locus_tag="TCM_029253" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pumilio 23, putative isoform 1" /protein_id="EOY27395.1" /db_xref="Phytozome:POPTR_0003s07060.1" /db_xref="TAIR:AT1G72320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C552" /translation="MGKKAKKGNGGFDGDGYNKKVAGQVTNGTGKFKKSSKHQSNSDS QTSLIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKELELATDYII SHTLQTLLEGCDVDHLCSFLKGCANVFPAIAMDRSGSHVAETALKSLARHVQDTEDYA IIEETLKMICKVIVVNPVDLMCNCYGSHVLRSFLCLCKGVPLDSAEFHGAKASKILAE RLNLKLFQSDGNNSQRLQQGFPNLLNSLVSGMVNCTREDIKTLQVDQYSSLVLQTALK LLAGDDQELLQIIPVLLGCKKQNLVEGKCIDLAIVRETVELMKETAFSHLMEVILEVA PESLYNEMFTKLFKNSLFELSSHHCGNFVVQALISHARTKDQMELMWEELGLKFEDLL GMGKSGVIAFLIAACQRLQTHEYKCCQALAAAVGSKNESSNCIVPRILFLDSYFSCED KSSWNWAGGVKIHTMGSLILQAIFKFQSEWIQPFIMSITSMDAEHVLEAAKDAGGARV IEAFLASDASTKQKRRLVVKLRGHFGELAMHPSGSFTVERCFNAGSLSLREAIASELL AVQAELSKTKQGPHLLRNLDIDRYATKPDQWRSKQASKQSAYNEFYFAFGSSESKSPT KNKFLSNASMQTSDPEELKNTRKEIDSFLTSTSMLDDTSAEKKKKRKKRNKDAGSEDA VGSKKVMENAVQNFLSQGRPHKKRRINDRASSNASKQKLKI" CDS join(21557142..21557290,21557377..21557740, 21557972..21558274,21558864..21559031,21559776..21559919, 21560212..21560331,21560487..21560672,21561351..21561499, 21561788..21561970,21562292..21562697) /locus_tag="TCM_029253" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pumilio 23, putative isoform 1" /protein_id="EOY27396.1" /db_xref="Phytozome:POPTR_0003s07060.1" /db_xref="TAIR:AT1G72320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C552" /translation="MGKKAKKGNGGFDGDGYNKKVAGQVTNGTGKFKKSSKHQSNSDS QTSLIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKELELATDYII SHTLQTLLEGCDVDHLCSFLKGCANVFPAIAMDRSGSHVAETALKSLARHVQDTEDYA IIEETLKMICKVIVVNPVDLMCNCYGSHVLRSFLCLCKGVPLDSAEFHGAKASKILAE RLNLKLFQSDGNNSQRLQQGFPNLLNSLVSGMVNCTREDIKTLQVDQYSSLVLQTALK LLAGDDQELLQIIPVLLGCKKQNLVEGKCIDLAIVRETVELMKETAFSHLMEVILEVA PESLYNEMFTKLFKNSLFELSSHHCGNFVVQALISHARTKDQMELMWEELGLKFEDLL GMGKSGVIAFLIAACQRLQTHEYKCCQALAAAVGSKNESSNCIVPRILFLDSYFSCED KSSWNWAGGVKIHTMGSLILQAIFKFQSEWIQPFIMSITSMDAEHVLEAAKDAGGARV IEAFLASDASTKQKRRLVVKLRGHFGELAMHPSGSFTVERCFNAGSLSLREAIASELL AVQAELSKTKQGPHLLRNLDIDRYATKPDQWRSKQASKQSAYNEFYFAFGSSESKSPT KNKFLSNASMQTSDPEELKNTRKEIDSFLTSTSMLDDTSAEKKKKRKKRNKDAGSEDA VGSKKVMENAVQNFLSQGRPHKKRRINDRASSNASKQKLKI" gene complement(21563007..21563731) /locus_tag="TCM_029254" /note="dbxref CacaoGD:Thecc1EG029254" mRNA complement(join(21563007..21563140,21563235..21563731)) /locus_tag="TCM_029254" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:28806.m000153" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.14 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5457t2" CDS complement(join(21563074..21563140,21563235..21563482)) /locus_tag="TCM_029254" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27397.1" /translation="MKAYTLALTALTLLLSLLLSSWANAAQAEARPIRHPQSSSVSGK ASSSQALGDLQADKIIPRTQVDSSFRRIPPSNSNPIQNKSNPPLQGERSRRQQIPRSL KH" gene 21564810..21568967 /locus_tag="TCM_029255" /note="dbxref CacaoGD:Thecc1EG029255" mRNA join(21564810..21565079,21565403..21565445, 21565773..21565924,21566420..21566480,21567058..21567096, 21567235..21567298,21567393..21567454,21567547..21567586, 21567745..21567772,21567871..21567962,21568344..21568967) /locus_tag="TCM_029255" /product="Ubiquitin-conjugating enzyme 34 isoform 2" /inference="alignment:exonerate- protein:2:ricco:28806.m000152" /inference="similar to AA sequence:ricco:28806.m000152" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc71t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc71t8" mRNA join(21564810..21565079,21565403..21565445, 21565773..21565924,21566420..21566474,21567058..21567096, 21567235..21567298,21567393..21567454,21567547..21567586, 21567745..21567772,21567871..21567962,21568344..21568967) /locus_tag="TCM_029255" /product="Ubiquitin-conjugating enzyme 34 isoform 1" /inference="alignment:exonerate- protein:2:ricco:28806.m000152" /inference="similar to AA sequence:ricco:28806.m000152" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc71t10; alternateUTRof:Thecc1EG029255t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc71t8" mRNA join(21564810..21565079,21565403..21565445, 21565773..21565924,21566420..21566474,21567058..21567096, 21567235..21567298,21567393..21567454,21567547..21567586, 21567745..21567772,21567871..21567962,21568344..21568635, 21568797..21568967) /locus_tag="TCM_029255" /product="Ubiquitin-conjugating enzyme 34 isoform 1" /inference="alignment:exonerate- protein:2:ricco:28806.m000152" /inference="similar to AA sequence:ricco:28806.m000152" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc71t8; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc71t8" mRNA join(21564810..21565079,21565773..21565924, 21566420..21566474,21567058..21567096,21567235..21567298, 21567393..21567454,21567547..21567586,21567745..21567772, 21567871..21567955,21568344..>21568416) /locus_tag="TCM_029255" /product="Ubiquitin-conjugating enzyme 33 isoform 5" /inference="alignment:exonerate- protein:2:ricco:28806.m000152" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021352t1" /inference="similar to AA sequence:Phytozome:Glyma16g01680.2" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc69t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc71t8" mRNA join(21564948..21565079,21565773..21565924, 21566420..21566474,21567058..21567096,21567235..21567298, 21567393..21567454,21567547..21567586,21567745..21567772, 21567871..21567962,21568344..21568909) /locus_tag="TCM_029255" /product="Ubiquitin-conjugating enzyme 34 isoform 1" /inference="alignment:exonerate- protein:2:ricco:28806.m000152" /inference="similar to AA sequence:ricco:28806.m000152" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00360t00003; alternateUTRof:Thecc1EG029255t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc71t8" CDS join(21565868..21565924,21566420..21566480, 21567058..21567096,21567235..21567298,21567393..21567454, 21567547..21567586,21567745..21567772,21567871..21567962, 21568344..21568620) /locus_tag="TCM_029255" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28806.m000152" /codon_start=1 /product="Ubiquitin-conjugating enzyme 34 isoform 2" /protein_id="EOY27399.1" /db_xref="TAIR:AT1G17280.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHI7" /translation="MAEKSCVKRLQKEYRALCKEPVSHVVARPSPNDILEWRKHYVLE GSEGTPFAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNP MWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKASLAFNCKNPTFRKLFPEYVD KYNKQQQQLVSEHLSPESTKEENLKPEAEKRVKSSVEDGKRVDPLRDTRRNRKQSFPT WMMLLLVSIFGIVMALPLLQL" CDS join(21565868..21565924,21566420..21566474, 21567058..21567096,21567235..21567298,21567393..21567454, 21567547..21567586,21567745..21567772,21567871..21567962, 21568344..21568620) /locus_tag="TCM_029255" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28806.m000152" /codon_start=1 /product="Ubiquitin-conjugating enzyme 34 isoform 1" /protein_id="EOY27398.1" /db_xref="TAIR:AT1G17280.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHI7" /translation="MAEKSCVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGS EGTPFAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMW SVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKASLAFNCKNPTFRKLFPEYVDKY NKQQQQLVSEHLSPESTKEENLKPEAEKRVKSSVEDGKRVDPLRDTRRNRKQSFPTWM MLLLVSIFGIVMALPLLQL" CDS join(21565868..21565924,21566420..21566474, 21567058..21567096,21567235..21567298,21567393..21567454, 21567547..21567586,21567745..21567772,21567871..21567962, 21568344..21568620) /locus_tag="TCM_029255" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28806.m000152" /codon_start=1 /product="Ubiquitin-conjugating enzyme 34 isoform 1" /protein_id="EOY27400.1" /db_xref="TAIR:AT1G17280.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHI7" /translation="MAEKSCVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGS EGTPFAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMW SVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKASLAFNCKNPTFRKLFPEYVDKY NKQQQQLVSEHLSPESTKEENLKPEAEKRVKSSVEDGKRVDPLRDTRRNRKQSFPTWM MLLLVSIFGIVMALPLLQL" CDS join(21565868..21565924,21566420..21566474, 21567058..21567096,21567235..21567298,21567393..21567454, 21567547..21567586,21567745..21567772,21567871..21567962, 21568344..21568620) /locus_tag="TCM_029255" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:28806.m000152" /codon_start=1 /product="Ubiquitin-conjugating enzyme 34 isoform 1" /protein_id="EOY27401.1" /db_xref="TAIR:AT1G17280.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHI7" /translation="MAEKSCVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGS EGTPFAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMW SVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKASLAFNCKNPTFRKLFPEYVDKY NKQQQQLVSEHLSPESTKEENLKPEAEKRVKSSVEDGKRVDPLRDTRRNRKQSFPTWM MLLLVSIFGIVMALPLLQL" CDS join(21565868..21565924,21566420..21566474, 21567058..21567096,21567235..21567298,21567393..21567454, 21567547..21567586,21567745..21567772,21567871..21567955, 21568344..>21568414) /locus_tag="TCM_029255" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG021352t1" /codon_start=1 /product="Ubiquitin-conjugating enzyme 33 isoform 5" /protein_id="EOY27402.1" /db_xref="Phytozome:Glyma16g01680.2" /db_xref="TAIR:AT5G50430.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FK29" /translation="MAEKSCVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGS EGTPFAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNPMW SVSSILTGLLSFMMDNSPTTGSVNTTAAEKQRLAKASLAFNSQHSENCFQSMWISTTS SSSSLFQ" gene 21570002..21571804 /locus_tag="TCM_029256" /note="dbxref CacaoGD:Thecc1EG029256" mRNA join(21570002..21570125,21570553..21570642, 21570955..21571804) /locus_tag="TCM_029256" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16220.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16220.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b028296t1a2; alternateUTRof:Thecc1EG029256t1; inference alignment:Newbler:10:TSA:cgbaP2_g13637t00001" mRNA join(21570053..21570366,21570553..21570642, 21570955..21571419) /locus_tag="TCM_029256" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16220.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16220.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13143t00001; alternateUTRof:Thecc1EG029256t1; inference alignment:Newbler:10:TSA:cgbaP2_g13637t00001" mRNA join(21570329..21570455,21570553..21570642, 21570955..21571545) /locus_tag="TCM_029256" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16220.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16220.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13637t00001; inference alignment:Newbler:10:TSA:cgbaP2_g13637t00001" CDS join(21570559..21570642,21570955..21571359) /locus_tag="TCM_029256" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27403.1" /db_xref="Phytozome:POPTR_0001s16220.1" /translation="MSKSPVHPKHETSDYACYEFDPQVNFSQFLEEARQHARDINFQR SSSCSEEVGKKRFGGEKKSKKSWKNSLFSWWKIDRKSKPSPDPVDGLHISKPTKGYGS GPLCGTARGVDTRRRRPSSGPVSILFHSTRKVENEVPYMCLDQPNDPYQINAYGPVYL VT" CDS join(21570559..21570642,21570955..21571359) /locus_tag="TCM_029256" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27404.1" /db_xref="Phytozome:POPTR_0001s16220.1" /translation="MSKSPVHPKHETSDYACYEFDPQVNFSQFLEEARQHARDINFQR SSSCSEEVGKKRFGGEKKSKKSWKNSLFSWWKIDRKSKPSPDPVDGLHISKPTKGYGS GPLCGTARGVDTRRRRPSSGPVSILFHSTRKVENEVPYMCLDQPNDPYQINAYGPVYL VT" CDS join(21570559..21570642,21570955..21571359) /locus_tag="TCM_029256" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27405.1" /db_xref="Phytozome:POPTR_0001s16220.1" /translation="MSKSPVHPKHETSDYACYEFDPQVNFSQFLEEARQHARDINFQR SSSCSEEVGKKRFGGEKKSKKSWKNSLFSWWKIDRKSKPSPDPVDGLHISKPTKGYGS GPLCGTARGVDTRRRRPSSGPVSILFHSTRKVENEVPYMCLDQPNDPYQINAYGPVYL VT" gene complement(21573532..21575051) /locus_tag="TCM_029257" /note="dbxref CacaoGD:Thecc1EG029257" mRNA complement(21573532..21575051) /locus_tag="TCM_029257" /product="RING-H2 finger protein ATL3, putative" /inference="alignment:exonerate- protein:2:ricco:28806.m000149" /inference="similar to AA sequence:ricco:28806.m000149" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1111t3; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1111t4" CDS complement(21573572..21574456) /locus_tag="TCM_029257" /note="dbxref ricco:28806.m000149" /codon_start=1 /product="RING-H2 finger protein ATL3, putative" /protein_id="EOY27406.1" /db_xref="TAIR:AT1G72310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XF63" /translation="MDKPGFDESTAVAITGKIMVIAIIVLFLVVVFVLFLHLYAKWFW WRIEEPTPPPSRRNRRRFVFAPGQDTAHPLRATKGLDPTILASLPVLMFRQEEFKDGL ECAVCLSELVEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVAAVEVENSGSV TSGDEVNANVNGHVQSPQDGLASGHSADSPSFPTNVLFWGNQTQVSSGGACLEEGASA SASVSGSGSFASSSLASGSGRQEGMLVIDVPMNVNENFPEEESKSPMPTRLRSLKRLL SREKRVAPSSSGSSSVDV" mobile_element 21577455..21577597 /note="source:scaffold_4_CACTA_0483 1013 1156" /mobile_element_type="transposon:TIR/CACTA" gene complement(21579535..21580951) /locus_tag="TCM_029258" /note="dbxref CacaoGD:Thecc1EG029258" mRNA complement(21579535..21580951) /locus_tag="TCM_029258" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g001970.1" /note="quality class is medium-utrpoor, express is strong, homology is ortholog weak, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.89 coverage" gene 21580155..21587234 /locus_tag="TCM_029259" /note="dbxref CacaoGD:Thecc1EG029259" mRNA join(21580155..21580658,21580745..21580807, 21582313..21582711,21582822..21582874,21583644..21583681, 21583884..21584202,21584791..21585104,21585321..21586384, 21586984..21587234) /locus_tag="TCM_029259" /product="Muscle M-line assembly protein unc-89, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:28806.m000147" /inference="similar to AA sequence:Phytozome:GSVIVT01016660001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04663t00001" CDS complement(21580214..21580591) /locus_tag="TCM_029258" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27407.1" /translation="MLPIILVFMAFLVISCLHVYDKWLKQWFGKGSSSHEMDCVVCLS KVSKGEKLRALPICHHSFHVHCIDAWLKVRPTCPLCRINVAPHRNFVCSSLLSFATTI GEWIENPLSLELTSAVCESFGYI" CDS join(21580622..21580658,21580745..21580807, 21582313..21582711,21582822..21582874,21583644..21583681, 21583884..21584202,21584791..21585104,21585321..21585933) /locus_tag="TCM_029259" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Muscle M-line assembly protein unc-89, putative isoform 1" /protein_id="EOY27408.1" /db_xref="Phytozome:GSVIVT01016660001" /db_xref="TAIR:AT1G53800.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GY04" /translation="MHSFKFKQVVLVGKPGALAAAVYTGKWPIWKLCHIATAQPSLQS HLVPLRAQTLIQGQVLSNPWKSSQLPTRLNFHVGHLETLTQGGKLQIRAVATLEPKCS VPKEDGRNTSQLGRDSSPSSTQLESLKSGDSDEEPDEREKLRRMRISKANKGNTPWNK GRKHSAETLQRIREGTRLAMQNPKVKMKLVNLGHAQSKETREKIGIGVRMGWERRREK LMVQENCHFEWMNLIAEASRKGYLGEEELQWDSYKILAAQLTKDWLESVEERKTMPRT KGSKRAPKSLEQRRKIAAAIAAKWADPEYRKRVCSGLAKYHGTQAGAERKPKRKPTGG AQSKQSPSKRKASDTNYSSTSETISPIERLSLRRRNKPLYKDPMASSKLEMIKNIRAQ RATEESRKIEAVERARLLIAEAEKAAKALEVAAVKSPVARASLIETRKLIAEAIQSIE SIERGQVTSDENGGYISVDSAEPVSQVEKKTQIESENSGLSQAEQKEVNGKQNLSLSK NEEFNFPNFMFQRIVNGDNDELTSPSSNNYSLSTLNFESLIKKSDSSKHVDLLETNGI IKHERNPLPNGIKVKLKDGDVPSKPVTVTRKWVRGKLVEVTEEAS" mRNA join(21581721..21581918,21582313..21582711, 21582822..21582874,21583644..21583681,21583884..21584202, 21584791..21585104,21585321..21586583) /locus_tag="TCM_029259" /product="Muscle M-line assembly protein unc-89, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:28806.m000147" /inference="similar to AA sequence:Phytozome:GSVIVT01016660001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5469t4; inference alignment:Newbler:10:TSA:cgbaB_g04663t00001" CDS join(21581906..21581918,21582313..21582711, 21582822..21582874,21583644..21583681,21583884..21584202, 21584791..21585104,21585321..21585933) /locus_tag="TCM_029259" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Muscle M-line assembly protein unc-89, putative isoform 2" /protein_id="EOY27409.1" /db_xref="Phytozome:GSVIVT01016660001" /db_xref="TAIR:AT1G53800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GY04" /translation="MPLLDIATAQPSLQSHLVPLRAQTLIQGQVLSNPWKSSQLPTRL NFHVGHLETLTQGGKLQIRAVATLEPKCSVPKEDGRNTSQLGRDSSPSSTQLESLKSG DSDEEPDEREKLRRMRISKANKGNTPWNKGRKHSAETLQRIREGTRLAMQNPKVKMKL VNLGHAQSKETREKIGIGVRMGWERRREKLMVQENCHFEWMNLIAEASRKGYLGEEEL QWDSYKILAAQLTKDWLESVEERKTMPRTKGSKRAPKSLEQRRKIAAAIAAKWADPEY RKRVCSGLAKYHGTQAGAERKPKRKPTGGAQSKQSPSKRKASDTNYSSTSETISPIER LSLRRRNKPLYKDPMASSKLEMIKNIRAQRATEESRKIEAVERARLLIAEAEKAAKAL EVAAVKSPVARASLIETRKLIAEAIQSIESIERGQVTSDENGGYISVDSAEPVSQVEK KTQIESENSGLSQAEQKEVNGKQNLSLSKNEEFNFPNFMFQRIVNGDNDELTSPSSNN YSLSTLNFESLIKKSDSSKHVDLLETNGIIKHERNPLPNGIKVKLKDGDVPSKPVTVT RKWVRGKLVEVTEEAS" mRNA join(21582851..21582884,21583644..21583681, 21583884..21584202,21584791..21585104,21585321..21586583, 21586719..21586803) /locus_tag="TCM_029259" /product="Muscle M-line assembly protein unc-89, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:28806.m000147" /inference="similar to AA sequence:Phytozome:GSVIVT01016660001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc634t6; inference alignment:Newbler:10:TSA:cgbaB_g04663t00001" CDS join(21583650..21583681,21583884..21584202, 21584791..21585104,21585321..21585933) /locus_tag="TCM_029259" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Muscle M-line assembly protein unc-89, putative isoform 3" /protein_id="EOY27410.1" /db_xref="Phytozome:GSVIVT01016660001" /db_xref="TAIR:AT1G53800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GY04" /translation="MKLVNLGHAQSKETREKIGIGVRMGWERRREKLMVQENCHFEWM NLIAEASRKGYLGEEELQWDSYKILAAQLTKDWLESVEERKTMPRTKGSKRAPKSLEQ RRKIAAAIAAKWADPEYRKRVCSGLAKYHGTQAGAERKPKRKPTGGAQSKQSPSKRKA SDTNYSSTSETISPIERLSLRRRNKPLYKDPMASSKLEMIKNIRAQRATEESRKIEAV ERARLLIAEAEKAAKALEVAAVKSPVARASLIETRKLIAEAIQSIESIERGQVTSDEN GGYISVDSAEPVSQVEKKTQIESENSGLSQAEQKEVNGKQNLSLSKNEEFNFPNFMFQ RIVNGDNDELTSPSSNNYSLSTLNFESLIKKSDSSKHVDLLETNGIIKHERNPLPNGI KVKLKDGDVPSKPVTVTRKWVRGKLVEVTEEAS" gene complement(21586194..21586983) /locus_tag="TCM_029260" /note="dbxref CacaoGD:Thecc1EG029260" mRNA complement(join(21586194..21586583,21586719..21586983)) /locus_tag="TCM_029260" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01290t00002" CDS complement(join(21586467..21586583,21586719..21586883)) /locus_tag="TCM_029260" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27411.1" /translation="MEGRVGVSGRWRAMGTCARMVWSQKQDQWLWFHTLKASNRAAVH GFKRPINERIDEEEVEQEIKNGKEEKESKRTEVGKKINSQVKSYQDCNK" gene 21587098..21590789 /locus_tag="TCM_029261" /note="dbxref CacaoGD:Thecc1EG029261" mRNA join(21587098..21588643,21589144..21589393, 21590067..21590789) /locus_tag="TCM_029261" /product="O-fucosyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29884.m000188" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400016129" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5475t3" mRNA join(21587217..21588643,21589144..21589396, 21590067..21590684) /locus_tag="TCM_029261" /product="O-fucosyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29884.m000188" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400016129" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5475t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5475t3" CDS join(21587394..21588643,21589144..21589396, 21590067..21590243) /locus_tag="TCM_029261" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="O-fucosyltransferase family protein isoform 2" /protein_id="EOY27413.1" /db_xref="Phytozome:PGSC0003DMP400016129" /db_xref="TAIR:AT1G17270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHI5" /translation="MDRDSSDEDDDRQTLIHQNDTKNLPHQIPASPRPSTSPRSSFHI EELESQIRRRFKLTFNKRYLFAIFLPLLIIPIYFSTDIRSLFSSNISSLKFNTVSDRI RESQLQALYLLNQQQNSLLSLWNHTFVNSNNNITAVQFDDIKASLLTQITLNKHIQQI LLSPHKTGNSPQNGTLLDPNFAGYSFDRCRKVDQKFAERKTFEWKPKPNKFLFAICLS GQMSNHLICLEKHMFFAAVLNRALVIPSSRFDYQYNRVLDIEHINGCIGKKAVIPFEE FMEIKKNHAHIDKFICYFSSPQPCYVDEEHLKKLKSLGISTGKLETAWKNEDIKKPSQ KTIKDVEEKFGSDDDVIAIGDVFYADVERDWVLQPGGPIAHKCKTLIEPSKLILLTAE RFIQTFLGSNFIALHFRRHGFLKFCNAKKPSCFYPIPQAADCITRMVERANTPVIYLS TDAAESETSLLQSMVVLNGKTIPLVKRPPRNSAEKWDALLYRHGLAEDPQVVEAMLDK TICAMSSVFIGAPGSTFTGDILRLRKDWGTASLCDEYLCQGEDPNFTAGEE" CDS join(21587394..21588643,21589144..21589393, 21590067..21590243) /locus_tag="TCM_029261" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="O-fucosyltransferase family protein isoform 1" /protein_id="EOY27412.1" /db_xref="Phytozome:PGSC0003DMP400016129" /db_xref="TAIR:AT1G17270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHI5" /translation="MDRDSSDEDDDRQTLIHQNDTKNLPHQIPASPRPSTSPRSSFHI EELESQIRRRFKLTFNKRYLFAIFLPLLIIPIYFSTDIRSLFSSNISSLKFNTVSDRI RESQLQALYLLNQQQNSLLSLWNHTFVNSNNNITAVQFDDIKASLLTQITLNKHIQQI LLSPHKTGNSPQNGTLLDPNFAGYSFDRCRKVDQKFAERKTFEWKPKPNKFLFAICLS GQMSNHLICLEKHMFFAAVLNRALVIPSSRFDYQYNRVLDIEHINGCIGKKAVIPFEE FMEIKKNHAHIDKFICYFSSPQPCYVDEEHLKKLKSLGISTGKLETAWKNEDIKKPSQ KTIKDVEEKFGSDDDVIAIGDVFYADVERDWVLQPGGPIAHKCKTLIEPSKLILLTAE RFIQTFLGSNFIALHFRRHGFLKFCNAKKPSCFYPIPQAADCITRMVERANTPVIYLS TDAAESETSLLQSMVVLNGKTIPLVKRPPRNSAEKWDALLYRHGLAEDPQVEAMLDKT ICAMSSVFIGAPGSTFTGDILRLRKDWGTASLCDEYLCQGEDPNFTAGEE" gene 21591906..21600763 /locus_tag="TCM_029262" /note="dbxref CacaoGD:Thecc1EG029262" mRNA join(21591906..21592671,21592820..21592884, 21592985..21593083,21593772..21593819,21594278..21594347, 21594471..21594542,21595118..21595252,21596052..21596176, 21598087..21598134,21598586..21598655,21598780..21598857, 21599438..21599572,21600396..21600763) /locus_tag="TCM_029262" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016657001" /inference="similar to AA sequence:TAIR:AT1G53760.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10131t00001" CDS join(21592477..21592671,21592820..21592884, 21592985..21593083,21593772..21593819,21594278..21594347, 21594471..21594542,21595118..21595252,21596052..21596176, 21598087..21598134,21598586..21598655,21598780..21598857, 21599438..21599572,21600396..21600539) /locus_tag="TCM_029262" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27414.1" /db_xref="TAIR:AT1G53760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NQN0" /translation="MRARLVVFPIRGRNWCFSRSIDPSAAESSAANTPSTVKELWKKM SSDSKPLNAKAEVLVDFVSNKMNKAWMGLEKAPEGSFKNKLHGFGLRLLARVKPTEIL LKSITKEVTNVQITYPSSLNARLVRRRLRQIALRGTVIHRKYLYGSVSLLPVTTAFAV LPLPNIPFFWVLFRTYSHWRAFQGSVKLLQLVSDYSQAQNSIVSNGKSNESGQNDSNY GTKDPQGLVWVLEPSKELEHIVRRGLETGSLSEQAISDICITFSLNKTDVLNLNARLV RRRLRQIALTGTVIHRKYLYGSVSLLPLTTPFSVLPLPLPNIPFFWVLFRTYSHWRAF QGSVKLLQLVSDHSQAQNSIVSNGKSNESGQNKSKYGTKEPQGLQWVLEPSKKLEHIV RRGVETGSLSEHATSDICMTFSLNKTDVLKYRDLV" mobile_element complement(21596790..21596933) /note="source:CACAO_Helitron_E7_scaffold_1 1 160" /mobile_element_type="transposon:Helitron" gene 21602096..21606549 /locus_tag="TCM_029263" /note="dbxref CacaoGD:Thecc1EG029263" mRNA join(21602096..21602281,21602620..21602701, 21603471..21603562,21603654..21603731,21603875..21603936, 21604439..21604583,21604721..21604939,21605042..21605223, 21605439..21605614,21605724..21606549) /locus_tag="TCM_029263" /product="Regulatory particle triple-A 1A" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016655001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029264t1" /inference="similar to AA sequence:frave:gene05485" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16429t1" CDS join(21602195..21602281,21602620..21602701, 21603471..21603562,21603654..21603731,21603875..21603936, 21604439..21604583,21604721..21604939,21605042..21605223, 21605439..21605614,21605724..21605881) /locus_tag="TCM_029263" /note="dbxref frave:gene05485; paralog of Thecc1EG029264t1" /codon_start=1 /product="Regulatory particle triple-A 1A" /protein_id="EOY27415.1" /db_xref="TAIR:AT1G53750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P35998" /translation="MAPEPEDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKVEKE IKEMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTEDA KYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLL ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGA RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKV EFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRA RRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN" gene 21603482..21616631 /locus_tag="TCM_029264" /note="dbxref CacaoGD:Thecc1EG029264" mRNA join(21603482..21603562,21613057..21613364, 21614142..21614182,21614535..21614595,21614874..21615018, 21615140..21615358,21615464..21615645,21615888..21616063, 21616201..21616417) /locus_tag="TCM_029264" /product="Regulatory particle triple-A 1A isoform 3" /inference="alignment:exonerate- protein:2:ricco:29739.m003665" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029263t1" /inference="similar to AA sequence:frave:gene05485" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc177t6_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5992t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc362t9" mobile_element complement(21607226..21607320) /note="source:MITE_Unknow_3_1 286 379" /mobile_element_type="transposon:TIR/MITE" mobile_element 21608612..21608660 /note="source:scaffold_8_CACTA_0858 10119 10167" /mobile_element_type="transposon:TIR/CACTA" mRNA join(21612480..21612899,21613283..21613364, 21614142..21614233,21614329..21614406,21614534..21614595, 21614874..21615018,21615140..21615358,21615464..21615645, 21615888..21616063,21616201..21616631) /locus_tag="TCM_029264" /product="Regulatory particle triple-A 1A isoform 1" /inference="alignment:exonerate- protein:2:ricco:29739.m003665" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029263t1" /inference="similar to AA sequence:Phytozome:Glyma03g42370.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5992t1" CDS join(21612813..21612899,21613283..21613364, 21614142..21614233,21614329..21614406,21614534..21614595, 21614874..21615018,21615140..21615358,21615464..21615645, 21615888..21616063,21616201..21616358) /locus_tag="TCM_029264" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029263t1" /codon_start=1 /product="Regulatory particle triple-A 1A isoform 1" /protein_id="EOY27416.1" /db_xref="Phytozome:Glyma03g42370.1" /db_xref="TAIR:AT1G53750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P35998" /translation="MVAQPEDDPMAEKNPKPLDEDDIALLKTYGLGPYSNSIKKAEKE IKEMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTEDA KYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLL ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGA RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKV EFGLPDMESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA RRKTATEKDFLDAVNKVIKGYQKFSATPKYMVYN" CDS join(21614585..21614595,21614874..21615018, 21615140..21615358,21615464..21615645,21615888..21616063, 21616201..21616358) /locus_tag="TCM_029264" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene05485; paralog of Thecc1EG029263t1" /codon_start=1 /product="Regulatory particle triple-A 1A isoform 3" /protein_id="EOY27417.1" /db_xref="TAIR:AT1G53750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSB4" /translation="MRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCK EQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR VIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQR TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDMESRTQIF KIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTATEKDFLDAV NKVIKGYQKFSATPKYMVYN" gene complement(21616480..21625061) /locus_tag="TCM_029265" /note="dbxref CacaoGD:Thecc1EG029265" mRNA complement(join(21616480..21617283,21617568..21617724, 21617826..21617965,21618697..21618829,21619255..21619526, 21619884..21620167,21620839..21621146,21621241..21621303, 21621415..21621480,21621562..21621633,21621747..21621818, 21621918..21621989,21622090..21622155,21622242..21622310, 21622407..21622539,21624095..21624349,21624951..21625061)) /locus_tag="TCM_029265" /product="Strubbelig-receptor family 6" /inference="alignment:exonerate-protein:2:frave:gene05491" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030297t1" /inference="similar to AA sequence:frave:gene05491" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14658t00001" CDS complement(join(21617128..21617283,21617568..21617724, 21617826..21617965,21618697..21618829,21619255..21619526, 21619884..21620167,21620839..21621146,21621241..21621303, 21621415..21621480,21621562..21621633,21621747..21621818, 21621918..21621989,21622090..21622155,21622242..21622310, 21622407..21622539,21624095..21624197)) /locus_tag="TCM_029265" /note="dbxref frave:gene05491; paralog of Thecc1EG030297t1" /codon_start=1 /product="Strubbelig-receptor family 6" /protein_id="EOY27418.1" /db_xref="TAIR:AT1G53730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C8M9" /translation="MRKNWRKGLVLLLFTVCILGFKPRCANGATDQGDASALGGMFSS LNSPQQLTGWTSSNGDPCGQSWKGVTCSGQRVTEIKLSNLGLSGSIYNLQSLTSLKEL DMSQNNIAGEIPYNLPPNLQQLNLAFNQFTGSVPYVFHDMPSLQYLNLGHNQLQNQLN DMFAPLSSLSTLDLSFNALTGDLPESFKNLSSVNSMYLQNNQFTGTIDVLANLPLDNL YVSNNRFTGWIPDQLKSINLQKDGNSWSSGPAPPPPPGTPPATRNNRNHKSGSNSSPS DGGSGGGSSKSGIGGGGIAGIVISILIVGAIVAFFLVKRRSKRSSSDIEKLDNEPFAP LASNEVQEMKSIQSSSSIDTKTFDTPASINLRPPPIDRHKSFDEEDFSKKPVVVKKAV PAPTNVTSYSIADLQMATGSFSVENLLGEGCFGRVYRAQFDDGKVLAVKKIDSSALPS EISDDFIEIVSNISQLHHTNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHVSDEYSK PLIWNSRVKIALGTARALEYLHEVCSPSIVHKNIKSANILLDAELNPHLSDSGLATFI PDADQVLNRDDVGSGYSAPEVAMSGLYSLKSDVYSFGVVMLELLTGRKPFDSTRPRLE QSLVRWATPQLHDIDALSKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEV VQALVRLVQRANMSKRTIGTDQGASQRTDNPDAHDDYMS" mobile_element 21618524..21618643 /note="source:scaffold_4_CACTA_0482 7604 7726" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21618553..21618646 /note="source:CACAO_M_S_E16386_F9_scaffold_2 2050 2142" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21629285..21632830 /locus_tag="TCM_029266" /note="dbxref CacaoGD:Thecc1EG029266" mRNA join(21629285..21630134,21630512..21630756, 21630891..21630924,21631127..21631851,21632253..21632830) /locus_tag="TCM_029266" /product="Triacylglycerol lipase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000628t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16160.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06381t00001" CDS join(21629792..21630134,21630512..21630756, 21630891..21630924,21631127..21631851,21632253..21632510) /locus_tag="TCM_029266" /note="paralog of Thecc1EG000628t1" /codon_start=1 /product="Triacylglycerol lipase, putative" /protein_id="EOY27419.1" /db_xref="Phytozome:POPTR_0001s16160.1" /db_xref="TAIR:AT3G14360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E7BKQ9" /translation="MASSTEFRDINDGLHDDLRYLIVRPEKGGIWDLMRYSLWGDTES GVRFLESSDQDLVSGEAADRRWVILVSIVARKIIHLFSKPMEFTGYVVDFFLNLISQN GSIFGLLHNLLHGDVVIPKRGTETFISSIGHLDERVDLYQGKKLVEDLHNSAPGEGVR KVELDDRATMDLCMMASKLAYENAEVIRNVVVHHWKMHFVDFYNCWDDYQKEKSTQVF MLCDKPKDANLILISFRGTEPFDADDWCTDFDYSWYETPKLGKIHMGFLEALGLGNRE DTATFHYHLHKKRTKHTCSEAAEVNCSNADAHSERSADIGNKDILPEMVEMTAYYLVR QKLKSLLEEHKNAKYIVTGHSLGGALAILLPIVLVLHEEMKLVQKLLGVYTFGQPRVG NRQLGRFMEAHLDHPVPKYFRVVYCNDLVPRLPYDDKNFLYKHFGVCLYYNSCYIEQI MDEEPNKNDFGITHLITEHLNAVWELIRSLTMGFTHGPEYKEGWFSIFLRILGLAMPG IAAHCPTDYVNSVRLGKLRTIQMSSY" gene complement(21632838..21641871) /locus_tag="TCM_029267" /note="dbxref CacaoGD:Thecc1EG029267" mRNA complement(join(21632838..21633533,21633663..21633832, 21633919..21634101,21634192..21634365,21634462..21634622, 21634719..21634800,21634916..21634948,21635322..21635560, 21635799..21635960,21636392..21636536,21636712..21636901, 21637243..21637283,21637384..21637533,21637603..21637722, 21638002..21638121,21638328..21638534,21638948..21639123, 21639225..21639408,21639610..21639747,21639870..21639968, 21640613..21640732,21640830..21640903,21641329..21641871)) /locus_tag="TCM_029267" /product="Autoinhibited H(+)-ATPase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16150.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039126t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16150.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5579t2" mRNA complement(join(21632838..21633533,21633663..21633832, 21633919..21634101,21634192..21634365,21634462..21634622, 21634719..21634800,21634916..21634948,21635322..21635560, 21635799..21635960,21636392..21636536,21636712..21636816, 21637384..21637506,21637603..21637722,21638002..21638121, 21638328..21638534,21638948..21639127,21639274..21639408, 21639610..21639747,21639870..21639968,21640613..21640732, 21640830..21640903,21641081..21641395)) /locus_tag="TCM_029267" /product="Autoinhibited H(+)-ATPase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16150.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039126t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16150.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b028307t1a2; alternateUTRof:Thecc1EG029267t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5579t2" mRNA complement(join(21632893..21633533,21633663..21633832, 21633919..21634101,21634192..21634365,21634462..21634622, 21634719..21634800,21634916..21634948,21635322..21635560, 21635799..21635960,21636392..21636536,21636712..21636816, 21637384..21637506,21637603..21637722,21638002..21638121, 21638328..21638534,21638948..21639127,21639274..21639408, 21639610..21639747,21639870..21639968,21640613..21640732, 21640830..21640903,21641499..21641735)) /locus_tag="TCM_029267" /product="Autoinhibited H(+)-ATPase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16150.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039126t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16150.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5579t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5579t2" CDS complement(join(21633437..21633533,21633663..21633832, 21633919..21634101,21634192..21634365,21634462..21634622, 21634719..21634800,21634916..21634948,21635322..21635560, 21635799..21635960,21636392..21636536,21636712..21636816, 21637384..21637506,21637603..21637722,21638002..21638121, 21638328..21638534,21638948..21639127,21639274..21639408, 21639610..21639747,21639870..21639968,21640613..21640732, 21640830..21640895)) /locus_tag="TCM_029267" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG039126t1" /codon_start=1 /product="Autoinhibited H(+)-ATPase isoform 2" /protein_id="EOY27421.1" /db_xref="Phytozome:POPTR_0001s16150.1" /db_xref="TAIR:AT1G17260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU58" /translation="MSEELEKPLLDPGNFNREGIDLERLPLEEVFEQLRTSRGGLTSE DAEARLVIFGPNKLEEKPENKFLKFLSFMWNPLSWVMEAAAVMAIVLANGGGQGPDWQ DFVGIICLLFINSTISFIEENNAGNAAAALMARLAPKTKVLRDGQWQERDAAILVPGD IISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKRTGDEVFSGSTCKHGEIEAV VIATGVHSFFGKAAHLVDSTEVIGHFQQVLTSIGNFCICSIAVGMVLEIIVMFPIQHR SYRDGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVL CSDKTGTLTLNRLTVDRNLVEVFSKDMDKDMIVLLAARASRLENQDAIDAAIINMLSD PKEARANIKEVHFLPFNPVEKRTAITYIDPDGNWYRASKGAPEQILSLCREKNEIAGK VHAIIDKFAERGLRALGVAFQEVQERTKESPGGPWTFCGLLALFDPPRHDSAETIRRA LNLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGRDKDEHEALPVDELIEKAD GFAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADIGIAVADATDAARSAAD IVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFVLLALIWEYDFPPFM VLIIAILNDGTIMTISKDRVKPSPRPDSWKLNEIFATGVVIGTYLALVTVLFYWIVVD TEFFETHFNVKSISDSSEQISSAVYLQVSIISQALIFVTRSQSWSFLERPGALLMCAF VVAQLVATLIAVYAHISFAYISGIGWGWAGVIWLYSLIFYIPLDIIKFTVRYALSGEA WNLLFDRKTAFTSKKDYGKEDRAAQWVLSQRSLQGLMAADLDFNGRKSRSSLIAEQAR RRAEIARLGELHTLKGHIESVVRLKNLDLNMIQSAHTV" CDS complement(join(21633437..21633533,21633663..21633832, 21633919..21634101,21634192..21634365,21634462..21634622, 21634719..21634800,21634916..21634948,21635322..21635560, 21635799..21635960,21636392..21636536,21636712..21636816, 21637384..21637506,21637603..21637722,21638002..21638121, 21638328..21638534,21638948..21639127,21639274..21639408, 21639610..21639747,21639870..21639968,21640613..21640732, 21640830..21640895)) /locus_tag="TCM_029267" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG039126t1" /codon_start=1 /product="Autoinhibited H(+)-ATPase isoform 2" /protein_id="EOY27422.1" /db_xref="Phytozome:POPTR_0001s16150.1" /db_xref="TAIR:AT1G17260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU58" /translation="MSEELEKPLLDPGNFNREGIDLERLPLEEVFEQLRTSRGGLTSE DAEARLVIFGPNKLEEKPENKFLKFLSFMWNPLSWVMEAAAVMAIVLANGGGQGPDWQ DFVGIICLLFINSTISFIEENNAGNAAAALMARLAPKTKVLRDGQWQERDAAILVPGD IISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKRTGDEVFSGSTCKHGEIEAV VIATGVHSFFGKAAHLVDSTEVIGHFQQVLTSIGNFCICSIAVGMVLEIIVMFPIQHR SYRDGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVL CSDKTGTLTLNRLTVDRNLVEVFSKDMDKDMIVLLAARASRLENQDAIDAAIINMLSD PKEARANIKEVHFLPFNPVEKRTAITYIDPDGNWYRASKGAPEQILSLCREKNEIAGK VHAIIDKFAERGLRALGVAFQEVQERTKESPGGPWTFCGLLALFDPPRHDSAETIRRA LNLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGRDKDEHEALPVDELIEKAD GFAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADIGIAVADATDAARSAAD IVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFVLLALIWEYDFPPFM VLIIAILNDGTIMTISKDRVKPSPRPDSWKLNEIFATGVVIGTYLALVTVLFYWIVVD TEFFETHFNVKSISDSSEQISSAVYLQVSIISQALIFVTRSQSWSFLERPGALLMCAF VVAQLVATLIAVYAHISFAYISGIGWGWAGVIWLYSLIFYIPLDIIKFTVRYALSGEA WNLLFDRKTAFTSKKDYGKEDRAAQWVLSQRSLQGLMAADLDFNGRKSRSSLIAEQAR RRAEIARLGELHTLKGHIESVVRLKNLDLNMIQSAHTV" CDS complement(join(21633437..21633533,21633663..21633832, 21633919..21634101,21634192..21634365,21634462..21634622, 21634719..21634800,21634916..21634948,21635322..21635560, 21635799..21635960,21636392..21636536,21636712..21636901, 21637243..21637283,21637384..21637533,21637603..21637722, 21638002..21638121,21638328..21638534,21638948..21639123, 21639225..21639408,21639610..21639747,21639870..21639968, 21640613..21640732,21640830..21640895)) /locus_tag="TCM_029267" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG039126t1" /codon_start=1 /product="Autoinhibited H(+)-ATPase isoform 1" /protein_id="EOY27420.1" /db_xref="Phytozome:POPTR_0001s16150.1" /db_xref="TAIR:AT1G17260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU58" /translation="MSEELEKPLLDPGNFNREGIDLERLPLEEVFEQLRTSRGGLTSE DAEARLVIFGPNKLEEKPENKFLKFLSFMWNPLSWVMEAAAVMAIVLANGGGQGPDWQ DFVGIICLLFINSTISFIEENNAGNAAAALMARLAPKTKVLRDGQWQERDAAILVPGD IISIKLGDIIPADARLLEGDPLKIDQASACYRVKNMPSDRLHALTGESLPVTKRTGDE VFSGSTCKHGEIEAVVIATGVHSFFGKAAHLVDSTEVIGHFQQVLTSIGNFCICSIAV GMVLEIIVMFPIQHRSYRDGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAIT KRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLVEVFSKDMDKDMIVLLAARASRLE NQDAIDAAIINMLSDPKERMKETLYFQARANIKEVHFLPFNPVEKRTAITYIDPDGNW YRASKGAPEQVKNISMSKADPKTNYLVMVNEVATEQDIYSSSSSSSSSPQYQILSLCR EKNEIAGKVHAIIDKFAERGLRALGVAFQEVQERTKESPGGPWTFCGLLALFDPPRHD SAETIRRALNLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGRDKDEHEALPV DELIEKADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADIGIAVADAT DAARSAADIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFVLLALIW EYDFPPFMVLIIAILNDGTIMTISKDRVKPSPRPDSWKLNEIFATGVVIGTYLALVTV LFYWIVVDTEFFETHFNVKSISDSSEQISSAVYLQVSIISQALIFVTRSQSWSFLERP GALLMCAFVVAQLVATLIAVYAHISFAYISGIGWGWAGVIWLYSLIFYIPLDIIKFTV RYALSGEAWNLLFDRKTAFTSKKDYGKEDRAAQWVLSQRSLQGLMAADLDFNGRKSRS SLIAEQARRRAEIARLGELHTLKGHIESVVRLKNLDLNMIQSAHTV" mobile_element complement(21645198..21645582) /note="source:scaffold_2_CACTA_0248 94 500" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21645924..21647276 /note="source:CACAO_M_E70014_F74_scaffold_10 8034 9362" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21647276..21650701 /note="source:INTACT561_F253_scaffold_5-int 1387 7634" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21653509..21653581 /note="source:CACAO_M_S_E90022_F9_scaffold_8 3114 3185" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21654215..21654524 /locus_tag="TCM_029271" /note="dbxref CacaoGD:Thecc1EG029271" mRNA 21654215..21654524 /locus_tag="TCM_029271" /product="ROTUNDIFOLIA like 9" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g05260.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage" CDS 21654277..21654453 /locus_tag="TCM_029271" /codon_start=1 /product="ROTUNDIFOLIA like 9" /protein_id="EOY27423.1" /translation="MAEFHSQQYNCGVKASAKRKGHGFSTKCASLVKQQRARLYILRR CATMLLCWYIHGDD" gene complement(21655453..21659780) /locus_tag="TCM_029272" /note="dbxref CacaoGD:Thecc1EG029272" mRNA complement(join(21655453..21656050,21656696..21656798, 21656895..21657108,21657235..21657433,21658567..21659780)) /locus_tag="TCM_029272" /product="4-coumarate:CoA ligase 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30131.m006921" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038994t1" /inference="similar to AA sequence:ricco:30131.m006921" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16316t2" mRNA complement(join(21655531..21656150,21656891..21657108, 21657235..21657433,21658567..21659444)) /locus_tag="TCM_029272" /product="4-coumarate:CoA ligase 2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30131.m006921" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038994t1" /inference="similar to AA sequence:ricco:30131.m006921" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc482t5_C1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16316t2" CDS complement(join(21655934..21656050,21656696..21656798, 21656895..21657108,21657235..21657433,21658567..21659565)) /locus_tag="TCM_029272" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30131.m006921; paralog of Thecc1EG038994t1" /codon_start=1 /product="4-coumarate:CoA ligase 2 isoform 1" /protein_id="EOY27424.1" /db_xref="TAIR:AT3G21240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU36" /translation="MAPQAELQQEEIIYRSKLPEIYIPKHLPLHSYCFQNISKVASRP CLINGTTDKVYTYAEVELTARRVASGLNKLGIHQRQVIMLLLPNTPEFVLSFLGASYL GAIATAANPFFTTAEISKQAKASNARLIITQACYLDKVKEFAQDNDVKIMCIDSAPEG YLHFSELTQADENDLPEVDIVPEDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDG ENPNLYFHSEDVILCTLPMFHIYALNSIMLCGLRAGAAILIMQKFEIGLLLELIQKYK VTIAPIVPPIVLAIAKSSETEKYDLSSVRMLKSGAAPLGKELEDAVRAKFPGAKLGQG YGMTEAGPVLAMCLGFAKEPFEIKSGACGTVVRNAEMKIVDPDTGSSLPRNQAGEICI RGDQIMKGYLNDPEATARTIDKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVA PAELEALLIAHPDIIDAAVVAMKDEASGEIPVAFVVRSGHSQLSEDEIKQYISKQVVF YKRISRVFFIEAIPKAPSGKILRKELRAKLATGNY" CDS complement(join(21656891..21657108,21657235..21657433, 21658567..21659319)) /locus_tag="TCM_029272" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30131.m006921; paralog of Thecc1EG038994t1" /codon_start=1 /product="4-coumarate:CoA ligase 2 isoform 2" /protein_id="EOY27425.1" /db_xref="TAIR:AT3G21240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU36" /translation="MLLLPNTPEFVLSFLGASYLGAIATAANPFFTTAEISKQAKASN ARLIITQACYLDKVKEFAQDNDVKIMCIDSAPEGYLHFSELTQADENDLPEVDIVPED VVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSEDVILCTLPMFHIYA LNSIMLCGLRAGAAILIMQKFEIGLLLELIQKYKVTIAPIVPPIVLAIAKSSETEKYD LSSVRMLKSGAAPLGKELEDAVRAKFPGAKLGQGYGMTEAGPVLAMCLGFAKEPFEIK SGACGTVVRNAEMKIVDPDTGSSLPRNQAGEICIRGDQIMKGYLNDPEATARTIDKEG WLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPDIIDAAVVA" gene 21664866..21668680 /locus_tag="TCM_029273" /note="dbxref CacaoGD:Thecc1EG029273" mRNA join(21664866..21665416,21665556..21665898, 21666034..21666733,21666890..21667184,21667353..21667597, 21667729..21668680) /locus_tag="TCM_029273" /product="XS domain-containing / XS zinc finger domain-containing protein-related-like protein" /inference="alignment:exonerate-protein:2:frave:gene13723" /inference="similar to AA sequence:Phytozome:POPTR_0019s00300.1" /note="quality class is medium, express is medium, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1839t1_C2" CDS join(21665143..21665416,21665556..21665898, 21666034..21666733,21666890..21667184,21667353..21667597, 21667729..21667926) /locus_tag="TCM_029273" /codon_start=1 /product="XS domain-containing / XS zinc finger domain-containing protein-related-like protein" /protein_id="EOY27426.1" /db_xref="Phytozome:POPTR_0019s00300.1" /db_xref="TAIR:AT5G23570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LDX1" /translation="MGKEFAFDLIYGVGNANENEIIELSYATFAEELQLQEVLKESMI ASEITKNELSSSSSSSPLPSSISTPQAISSPSSEQSLEELEMEELERAFNFKTLKDQE VAVAEAFKKSACPVCHKLSCTECTIPQDSGLNCLEKQWIDWDELRRGQAQSSGLSCNE QQRINWDEKGREHSMAWSPRWSGPTGHYQPKFKGRRTGDIPRNTSSNESHAKTSLRFG NVPIAGIDNNQDPKGKGKAIDNDWLLVSKRKPKSRAGSGTAKRWGPRHPNPLKGSENN NRHVVKVNEVQNVVHEDDYDTLDDEDDFDSDTSQKSHESRKKSKTFKEFFERIDALNI EEIDETLWHCPACQGGPGAIKWYRSIQDLIAHAKNIGARRVKRHRELAELLEEELRRK GTSIAPAGQTVFGNWKGLKEDARDHEIVWPPIVVIVNTMTNIYKDGKCVGMGSLELLE HFSSYPALKAQHSYGPEGHCGLSVLIFESSAVGYLEAERLHKNFVEQGLDRFAWNFCS DVILPGGGRQLYGFMAVKEDLDVFNQHCQGKSKVKYELKSYQMAVLNEIKKMSEDSQQ LIWLKDRLAQERKRAKTFEQSVRNLSRNLQQKTKDIHIFKQRVQSLHEQNKEEMDYQE NFYKDQIKILEARMKELEKLQESDANPLHREEPEPAVACPMEEYTPYQHNSNHDIDEV EE" gene 21669914..21671594 /locus_tag="TCM_029274" /note="dbxref CacaoGD:Thecc1EG029274" mRNA join(21669914..21670751,21671188..21671594) /locus_tag="TCM_029274" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07430.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029275t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s07430.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5496t1" CDS join(21669919..21670751,21671188..21671260) /locus_tag="TCM_029274" /note="paralog of Thecc1EG029275t1" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY27427.1" /db_xref="Phytozome:POPTR_0001s07430.1" /db_xref="TAIR:AT3G14250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P575" /translation="MAQIKPTSDLDFVDDSYYLALFDQDEEEIFPPSDDKYAEELQFQ EALMSSAISSQMTTSVSKPCRIHASSPILIQATPHLELLEMETTEAGESSLSFCEICV ERKESDQMFTTGSCVHSYCSDCISKHVLTRVEESITIITCPGVNCKAVLELDICRPVL PDLVVHRWEDALCQEFINTSQRLYCPFRDCSAPLLNDNGGEDIRESECPFCHRLFCAR CNVPWHPGIECEDYQRLNEDERGTVDLMVRELAKEKKWARCPRCKYYVERTQGCPHMT CRCQFQFCYGCEQEWNQNHGGCQRN" gene 21674555..21676251 /locus_tag="TCM_029275" /note="dbxref CacaoGD:Thecc1EG029275" mRNA join(21674555..21675402,21675708..21676251) /locus_tag="TCM_029275" /product="RING/U-box superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400033933" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029278t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s07430.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc81t6" CDS join(21674597..21675402,21675708..21675780) /locus_tag="TCM_029275" /note="paralog of Thecc1EG029278t2" /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="EOY27428.1" /db_xref="Phytozome:POPTR_0001s07430.1" /db_xref="TAIR:AT3G53690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P575" /translation="MGTSSSDFDFAEEIYLSEVLDGSEGGDLQQLDAKFAEQLQFQDA IFFSVKETGSSSTSRQMNIGATSSMRKPKARKSATKAGESSLSFCEICSERKERRQMF PISGCSHSFCSDCISMYVKAKLEGNITIIMCPAENCRVILELEACRPLLPKEVVNLWQ DLLCEELLCATGGRLYCPFKDCSALLLNDNQEVIAECECPFCHRLFCAQCHVPWHPGI DCEEYQNLTEDERGREDLMVRKLVKENKWRRCSSCHIIVERTEGCLHITCRCKFEFCY ACGAEWTQDHGGCQNN" gene 21677078..21686292 /locus_tag="TCM_029276" /note="dbxref CacaoGD:Thecc1EG029276" mRNA join(21677078..21677189,21677293..21677378, 21678108..21678117,21678507..21678569,21678905..21679018, 21679371..21679404,21686100..21686292) /locus_tag="TCM_029276" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029279t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s07440.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc77t12_C2" CDS join(21677117..21677189,21677293..21677378, 21678108..21678117,21678507..21678569,21678905..21679018, 21679371..21679404,21686100..21686127) /locus_tag="TCM_029276" /note="paralog of Thecc1EG029279t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY27429.1" /db_xref="Phytozome:POPTR_0001s07440.1" /db_xref="TAIR:AT1G73110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XN85" /translation="MNIAVGARAGVFDDLFAGNFLGRDSDIVFDYRQKVTRSFEYLQG DYYIAPAFMDKVVCHIVKNFLAHLLNVKIPLILAIWGGKGQGKSFQTELIFQAMGIEP VIMSAGELESERAGEPGKLIRERYSYLSLFTMP" mobile_element complement(21680376..21681406) /note="source:scaffold_2_CACTA_0248 10621 11660" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21680379..21681691 /note="source:INTACT639F_F363_scaffold_5-int 4811 6117" /mobile_element_type="retrotransposon:LTR/Copia" gene 21682167..21684147 /locus_tag="TCM_029278" /note="dbxref CacaoGD:Thecc1EG029278" mRNA join(21682167..21682414,21682608..21682681, 21682839..21683499,21683805..21684147) /locus_tag="TCM_029278" /product="RING/U-box superfamily protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029275t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s07430.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5557t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5557t1" mobile_element 21682372..21682686 /note="source:CACAO_M_E4063_F12_scaffold_2 7204 7543" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA join(21682691..21683499,21683805..21684147) /locus_tag="TCM_029278" /product="RING/U-box superfamily protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029275t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s07430.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5557t3; alternateUTRof:Thecc1EG029278t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5557t1" CDS 21682874..21683425 /locus_tag="TCM_029278" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029275t1" /codon_start=1 /product="RING/U-box superfamily protein isoform 1" /protein_id="EOY27430.1" /db_xref="Phytozome:POPTR_0001s07430.1" /db_xref="TAIR:AT3G53690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P575" /translation="MNIRATSSMLKPKARKSATKAGESSLSFCEICAERKERRQMFPI SGCSHSFCSDCISMHVRTKLEGNITIIMCPGDCRVILELEACRPLLPKEVVNLWEDLL CEELLCATGGRLYCPFKDCSALLLNDNQGEVIAECECPFCHRLFCAQCHVPWHPGIDC EEYQNLTEDERGREDLMVRKLVK" CDS 21682874..21683425 /locus_tag="TCM_029278" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029275t1" /codon_start=1 /product="RING/U-box superfamily protein isoform 1" /protein_id="EOY27431.1" /db_xref="Phytozome:POPTR_0001s07430.1" /db_xref="TAIR:AT3G53690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P575" /translation="MNIRATSSMLKPKARKSATKAGESSLSFCEICAERKERRQMFPI SGCSHSFCSDCISMHVRTKLEGNITIIMCPGDCRVILELEACRPLLPKEVVNLWEDLL CEELLCATGGRLYCPFKDCSALLLNDNQGEVIAECECPFCHRLFCAQCHVPWHPGIDC EEYQNLTEDERGREDLMVRKLVK" gene 21683955..21704929 /locus_tag="TCM_029279" /note="dbxref CacaoGD:Thecc1EG029279" mRNA join(21683955..21684013,21684540..21685063, 21685166..21685251,21685964..21685973,21686294..21686356, 21686694..21686807,21687163..21687224,21688151..21688205, 21688381..21688582,21689310..21689416,21689585..21689640, 21689918..21690010,21690481..21690720,21692459..21692855, 21702437..21702966,21704907..21704929) /locus_tag="TCM_029279" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07440.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042729t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s07440.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc77t16_C2" CDS join(21684733..21685063,21685166..21685251, 21685964..21685973,21686294..21686356,21686694..21686807, 21687163..21687224,21688151..21688205,21688381..21688582, 21689310..21689416,21689585..21689640,21689918..21690010, 21690481..21690588) /locus_tag="TCM_029279" /note="paralog of Thecc1EG042729t2" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY27432.1" /db_xref="Phytozome:POPTR_0001s07440.1" /db_xref="TAIR:AT1G73110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AST9" /translation="MALVRVPSSFPSILPSVFPKKLLSVSSSFPISCSSKSTPNQVKN NDDNSNIDNPKEPKRLSEQSSWEAKDSEGRDYLYRLGKEADNMNIAVGARAGVIDDLF AGNFLGRDSDVVFDYRQKVTKSFEYLQGDYYIAPAFMDKVVCHIVKNYLAYLLNVKIP LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQV VQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESD ITNRIPIIATGNDFSTLYAPLIRDGRMEKFYWQPTHEDIVNIVHRMYEKDGISKDDVV NIVDKFPNQALDFYGALRSRTYDRSIAKWIEDIGGVEKLGHKLLRRRKNEELPVYTPP KQTVEALLESGYSLLREQQLITETKLSKEYMKNMDD" mobile_element complement(21698332..21698483) /note="source:scaffold_4_CACTA_0505 10880 11012" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21706632..21707745 /note="source:CACAO_M_E49260_F22_scaffold_6 1 1087" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21709583..21711896) /locus_tag="TCM_029281" /note="dbxref CacaoGD:Thecc1EG029281" mRNA complement(join(21709583..21711393,21711500..21711896)) /locus_tag="TCM_029281" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30131.m006916" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036818t1" /inference="similar to AA sequence:ricco:30131.m006916" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13141t00001" CDS complement(21709750..21710886) /locus_tag="TCM_029281" /note="dbxref ricco:30131.m006916; paralog of Thecc1EG036818t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27433.1" /db_xref="TAIR:AT2G24530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HBT3" /translation="MQPPHQHSRINLIELKAQLIKRLGLERSKLYFHYLNKLLNLKIS KIEFNKLCFRVLGRENVRLHNLLISSILKNACLAKVPPLPVTGDENQQSGNVLLLPGK ASSRASTRLNAKVDSASHESIITNENVVSGNGKLTCHDIRKLVQHHQEVLGKADNGRD VLLHNPEILPLTKGSVGGFLSEDSREKSELLVVEDGKELCARSSLQAPLGISLFSDSI SGARRALPSVRSGGYSNSYDTGGLLDSEALRERMQQLAALEGLGGVSMDCANILSNGL DIYLKSLIRMCIELVGTRHGCNLSKNNTLKHHLFGKLVNGVLPSYHNQLQNSSRALEG IDGQISYKLISLLDFKVAMELNPQGLGEDWPLLLEKIYMRSFEE" gene complement(21712448..21718048) /locus_tag="TCM_029282" /note="dbxref CacaoGD:Thecc1EG029282" mRNA complement(join(21712448..21713109,21713904..21714003, 21714107..21714209,21714778..21714918,21715329..21715489, 21715573..21715629,21716172..21716246,21717636..21718048)) /locus_tag="TCM_029282" /product="Glucose-6-phosphate 1-epimerase, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029239001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039290t2" /inference="similar to AA sequence:Phytozome:GSVIVT01029239001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10617t00001" CDS complement(join(21712895..21713109,21713904..21714003, 21714107..21714209,21714778..21714918,21715329..21715489, 21715573..21715629,21716172..21716246,21717636..21717728)) /locus_tag="TCM_029282" /note="paralog of Thecc1EG039290t2" /codon_start=1 /product="Glucose-6-phosphate 1-epimerase, putative" /protein_id="EOY27434.1" /db_xref="Phytozome:GSVIVT01029239001" /db_xref="TAIR:AT5G57330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q40784" /translation="MSAEKMHVEHCKGVNGLDKVILREIRGCSAEVYLYGGQVTSWKN EHGEELLFLSSKTTFKPPKAIRGGIPICFPQFGNNGSLEQHGFARNRFWSVDLDPPPF PSNTSHRAFVDLILRPSEEDVKIWPHRYECRLRVALGPGGDLMLTSRIRNTNTDGKSF TFTFAYHTYFFVTDISEVRVEGLETLDYLDNLKSKERFTEQGDAITFESEVDKVYLST PTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMPDFGDDEYKHMLCVEAACVE KPITLKPGEEWRGRQELSAVPSSYCSGQLDPRRVFCSG" mobile_element complement(21718074..21718125) /note="source:INTACT289_F14_scaffold_4-int 1352 1402" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21719855..21731376) /locus_tag="TCM_029283" /note="dbxref CacaoGD:Thecc1EG029283" mRNA complement(join(21719855..21721458,21731233..21731376)) /locus_tag="TCM_029283" /product="FASCICLIN-like arabinogalactan protein 14 precursor, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400045610" /inference="similar to AA sequence:Phytozome:POPTR_0001s07490.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.70 coverage" CDS complement(21720154..21721068) /locus_tag="TCM_029283" /codon_start=1 /product="FASCICLIN-like arabinogalactan protein 14 precursor, putative" /protein_id="EOY27435.1" /db_xref="Phytozome:POPTR_0001s07490.1" /db_xref="TAIR:AT3G12660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLR8" /translation="MSPVSSPVVALFFSLFLLLPAADAFNITQILSQFPDFTTFNNYL IHTGVADQINSEQTVTVLVVANGNMSEVSGQSPDAMKKTLSVHVILDYFGVEKLKNLQ NKTALTLTTLYQQSGQAQNQQGFLNVAHVGNGGVAFGSAAAGSNLDSIFIKPVASQPY NISVLQISNIINVPSNSTTPSSPPEQAPASSPITKPHPPAASPPRKVLAPAPSPKKSP PGNASPPPDADSPAASPPNPSNATAPSVAKPPAADTPAESASNPVADGPDSDEADNNS SSASVTSGNYLAAILMMFTSAWFLLTMI" mobile_element complement(21722710..21723652) /note="source:scaffold_4_CACTA_0505 4810 5673" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21723656..21724197 /note="source:INTACT566_F257_scaffold_7-int 237 740" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21725801..21727305) /note="source:CACAO_on_E6_scaffold_1 1714 3200" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(21727307..21727854) /note="source:INTACT713_F309_scaffold_9-int 5659 6236" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21727851..21728954 /note="source:CACAO_on_E26_scaffold_4 1492 2595" /mobile_element_type="transposon:TIR/hAT" mobile_element 21728955..21730090 /note="source:CACAO_hAT_E2876_scaffold_6 1 1136" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(21730087..21730711) /note="source:CACAO_on_E6_scaffold_1 4 629" /mobile_element_type="transposon:TIR/hAT" gene complement(21730580..21740918) /locus_tag="TCM_029285" /note="dbxref CacaoGD:Thecc1EG029285" mRNA complement(join(21730580..21731558,21731641..21731692, 21731773..21731834,21732624..21732685,21732779..21732827, 21732912..21733037,21733646..21733702,21733779..21733876, 21734017..21734126,21735707..21735943,21736209..21736279, 21736430..21736549,21736644..21736712,21737243..21737308, 21737416..21737586,21737675..21737743,21737837..21737918, 21738007..21738051,21738315..21738439,21738762..21739016, 21739921..21740101,21740337..21740376,21740545..21740617, 21740845..21740918)) /locus_tag="TCM_029285" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016893t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s07500.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc90t1" mRNA complement(join(21731245..21731558,21731641..21731692, 21731773..21731834,21732624..21732685,21732779..21732827, 21732912..21733037,21733661..21733702,21733779..21733876, 21734017..21734126,21735707..21735943,21736209..21736279, 21736430..21736549,21736644..21736712,21737243..21737308, 21737416..21737586,21737675..21737743,21737837..21737918, 21738007..21738051,21738315..21738439,21738762..21739016, 21739921..21740101,21740545..21740617)) /locus_tag="TCM_029285" /product="Kinase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016893t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s07500.3" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc90t6; alternateUTRof:Thecc1EG029285t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc90t1" mRNA complement(join(21731245..21731558,21731641..21731692, 21731773..21731834,21732624..21732685,21732779..21732827, 21732912..21733037,21733646..21733702,21733779..21733876, 21734017..21734126,21735707..21735943,21736209..21736279, 21736430..21736549,21736644..21736712,21737243..21737308, 21737416..21737586,21737675..21737743,21737837..21737918, 21738007..21738051,21738315..21738439,21738762..21739016, 21739921..21740101,21740545..21740617)) /locus_tag="TCM_029285" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016893t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s07500.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc90t5; alternateUTRof:Thecc1EG029285t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc90t1" mRNA complement(join(21731245..21731558,21731641..21731692, 21731773..21731834,21732624..21732685,21732779..21732827, 21732912..21733037,21733661..21733702,21733779..21733876, 21734017..21734126,21735707..21735943,21736209..21736279, 21736430..21736549,21736644..21736712,21737243..21737308, 21737416..21737586,21737675..21737743,21737837..21737918, 21738007..21738051,21738315..21738439,21738762..21739016, 21739921..21740101,21740337..21740376,21740545..21740617)) /locus_tag="TCM_029285" /product="Kinase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s07500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016893t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s07500.3" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc90t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc90t1" CDS complement(join(21731553..21731558,21731641..21731692, 21731773..21731834,21732624..21732685,21732779..21732827, 21732912..21733037,21733661..21733702,21733779..21733876, 21734017..21734126,21735707..21735943,21736209..21736279, 21736430..21736549,21736644..21736712,21737243..21737308, 21737416..21737586,21737675..21737743,21737837..21737918, 21738007..21738051,21738315..21738439,21738762..21739016, 21739921..21740079)) /locus_tag="TCM_029285" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016893t2" /codon_start=1 /product="Kinase superfamily protein isoform 2" /protein_id="EOY27437.1" /db_xref="Phytozome:POPTR_0001s07500.3" /db_xref="TAIR:AT1G79640.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IF81" /translation="MEKKKYPIGPEYYTLHEEVGQGVSASVHRAVCIPFNEIVAIKIL DFERDNCDLNNISREAQTMILVDHPNVLKSHCSFVSDHNLWVVMPYMAGGSCLHILKA AYPDGFEEVVIATVLREVLKGLEYLHHHGHIHRDVKAGNILIDSRGAIKLGDFGVSAC IFDSGDRQRMRNTFVGTPCWMAPEVMEQLHGYDFKADIWSFGITALELAHGHAPFSKY PPMKVLLMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPLKRPSAKKLLKHSFFKQ ARSNDYIARTLLDGLPALGDRIQALKRKEEDMLAQKKMPDGEKEELSQNEYKRGISGW NFNLEDMKAQASLIQDEDLVSDTNQGGSSSSLSTLDGQDKQSECQTSSQPLDKEDNDP VQNQPTPVAAVEPTINIAKVRFERSDDDSSVASPSHEHHAISPHHDDHVESNLGEKSV LEINGKSSDNMSKPFYQRTTSFSGSTSIPETIVPPIKGESDKQNQPQNIFVGNGAAVP AGGEDSISDLHSKASKSSAVNSDDLDEKAKPPVVQQRGRFKVTSENVDLEKVAPAPIL QKSHSMQVLTPHPVVSLAPPPSDAASSTLAAHHLFPLLQSVLQTNILQRENILNLIKH ISAVDSTVNRAFEGVCTPANVAVTEKSLLEAAHDRERELLHEITELQWRLICAQEELQ KYKTENAQV" CDS complement(join(21731553..21731558,21731641..21731692, 21731773..21731834,21732624..21732685,21732779..21732827, 21732912..21733037,21733661..21733702,21733779..21733876, 21734017..21734126,21735707..21735943,21736209..21736279, 21736430..21736549,21736644..21736712,21737243..21737308, 21737416..21737586,21737675..21737743,21737837..21737918, 21738007..21738051,21738315..21738439,21738762..21739016, 21739921..21740079)) /locus_tag="TCM_029285" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG016893t2" /codon_start=1 /product="Kinase superfamily protein isoform 2" /protein_id="EOY27439.1" /db_xref="Phytozome:POPTR_0001s07500.3" /db_xref="TAIR:AT1G79640.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IF81" /translation="MEKKKYPIGPEYYTLHEEVGQGVSASVHRAVCIPFNEIVAIKIL DFERDNCDLNNISREAQTMILVDHPNVLKSHCSFVSDHNLWVVMPYMAGGSCLHILKA AYPDGFEEVVIATVLREVLKGLEYLHHHGHIHRDVKAGNILIDSRGAIKLGDFGVSAC IFDSGDRQRMRNTFVGTPCWMAPEVMEQLHGYDFKADIWSFGITALELAHGHAPFSKY PPMKVLLMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPLKRPSAKKLLKHSFFKQ ARSNDYIARTLLDGLPALGDRIQALKRKEEDMLAQKKMPDGEKEELSQNEYKRGISGW NFNLEDMKAQASLIQDEDLVSDTNQGGSSSSLSTLDGQDKQSECQTSSQPLDKEDNDP VQNQPTPVAAVEPTINIAKVRFERSDDDSSVASPSHEHHAISPHHDDHVESNLGEKSV LEINGKSSDNMSKPFYQRTTSFSGSTSIPETIVPPIKGESDKQNQPQNIFVGNGAAVP AGGEDSISDLHSKASKSSAVNSDDLDEKAKPPVVQQRGRFKVTSENVDLEKVAPAPIL QKSHSMQVLTPHPVVSLAPPPSDAASSTLAAHHLFPLLQSVLQTNILQRENILNLIKH ISAVDSTVNRAFEGVCTPANVAVTEKSLLEAAHDRERELLHEITELQWRLICAQEELQ KYKTENAQV" CDS complement(join(21731553..21731558,21731641..21731692, 21731773..21731834,21732624..21732685,21732779..21732827, 21732912..21733037,21733646..21733702,21733779..21733876, 21734017..21734126,21735707..21735943,21736209..21736279, 21736430..21736549,21736644..21736712,21737243..21737308, 21737416..21737586,21737675..21737743,21737837..21737918, 21738007..21738051,21738315..21738439,21738762..21739016, 21739921..21740079)) /locus_tag="TCM_029285" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016893t2" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY27436.1" /db_xref="Phytozome:POPTR_0001s07500.1" /db_xref="TAIR:AT1G79640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IF81" /translation="MEKKKYPIGPEYYTLHEEVGQGVSASVHRAVCIPFNEIVAIKIL DFERDNCDLNNISREAQTMILVDHPNVLKSHCSFVSDHNLWVVMPYMAGGSCLHILKA AYPDGFEEVVIATVLREVLKGLEYLHHHGHIHRDVKAGNILIDSRGAIKLGDFGVSAC IFDSGDRQRMRNTFVGTPCWMAPEVMEQLHGYDFKADIWSFGITALELAHGHAPFSKY PPMKVLLMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPLKRPSAKKLLKHSFFKQ ARSNDYIARTLLDGLPALGDRIQALKRKEEDMLAQKKMPDGEKEELSQNEYKRGISGW NFNLEDMKAQASLIQDEDLVSDTNQGGSSSSLSTLDGQDKQSECQTSSQPLDKEDNDP VQNQPTPVAAVEPTINIAKVRFERSDDDSSVASPSHEHHAISPHHDDHVESNLGEKSV LEINGKSSDNMSKPFYQRTTSFSGSTSIPETIVPPIKGESDKQNQPQNIFVGNGAAVP AGGEDSISDLHSKASKSSAVNSDDLDEKAKPPVVQQRGRFKVTSENVDLEKVAPAPIL QKSHSMQVGTLEVLTPHPVVSLAPPPSDAASSTLAAHHLFPLLQSVLQTNILQRENIL NLIKHISAVDSTVNRAFEGVCTPANVAVTEKSLLEAAHDRERELLHEITELQWRLICA QEELQKYKTENAQV" CDS complement(join(21731553..21731558,21731641..21731692, 21731773..21731834,21732624..21732685,21732779..21732827, 21732912..21733037,21733646..21733702,21733779..21733876, 21734017..21734126,21735707..21735943,21736209..21736279, 21736430..21736549,21736644..21736712,21737243..21737308, 21737416..21737586,21737675..21737743,21737837..21737918, 21738007..21738051,21738315..21738439,21738762..21739016, 21739921..21740079)) /locus_tag="TCM_029285" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG016893t2" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY27438.1" /db_xref="Phytozome:POPTR_0001s07500.1" /db_xref="TAIR:AT1G79640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IF81" /translation="MEKKKYPIGPEYYTLHEEVGQGVSASVHRAVCIPFNEIVAIKIL DFERDNCDLNNISREAQTMILVDHPNVLKSHCSFVSDHNLWVVMPYMAGGSCLHILKA AYPDGFEEVVIATVLREVLKGLEYLHHHGHIHRDVKAGNILIDSRGAIKLGDFGVSAC IFDSGDRQRMRNTFVGTPCWMAPEVMEQLHGYDFKADIWSFGITALELAHGHAPFSKY PPMKVLLMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPLKRPSAKKLLKHSFFKQ ARSNDYIARTLLDGLPALGDRIQALKRKEEDMLAQKKMPDGEKEELSQNEYKRGISGW NFNLEDMKAQASLIQDEDLVSDTNQGGSSSSLSTLDGQDKQSECQTSSQPLDKEDNDP VQNQPTPVAAVEPTINIAKVRFERSDDDSSVASPSHEHHAISPHHDDHVESNLGEKSV LEINGKSSDNMSKPFYQRTTSFSGSTSIPETIVPPIKGESDKQNQPQNIFVGNGAAVP AGGEDSISDLHSKASKSSAVNSDDLDEKAKPPVVQQRGRFKVTSENVDLEKVAPAPIL QKSHSMQVGTLEVLTPHPVVSLAPPPSDAASSTLAAHHLFPLLQSVLQTNILQRENIL NLIKHISAVDSTVNRAFEGVCTPANVAVTEKSLLEAAHDRERELLHEITELQWRLICA QEELQKYKTENAQV" gene 21741808..21746439 /locus_tag="TCM_029286" /note="dbxref CacaoGD:Thecc1EG029286" mRNA join(21741808..21742125,21742775..21743064, 21743178..21743339,21743864..21743902,21743997..21744073, 21744160..21744204,21744784..21744961,21745057..21745191, 21745294..21745359,21745466..21745513,21745593..21745702, 21745987..21746065,21746154..21746439) /locus_tag="TCM_029286" /product="Rad23 UV excision repair protein family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s18540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011819t1" /inference="similar to AA sequence:frave:gene15893" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02971t00001" mRNA join(21742058..21742125,21742763..21743064, 21743178..21743339,21743864..21743902,21743997..21744073, 21744160..21744204,21744784..21744961,21745057..21745191, 21745294..21745359,21745466..21745513,21745605..>21745698) /locus_tag="TCM_029286" /product="Rad23 UV excision repair protein family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s18540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019468t2" /inference="similar to AA sequence:frave:gene15893" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc176t44; inference alignment:Newbler:10:TSA:cgbaP1_g02971t00001" CDS join(21742999..21743064,21743178..21743339, 21743864..21743902,21743997..21744073,21744160..21744204, 21744784..21744961,21745057..21745191,21745294..21745359, 21745466..21745513,21745593..21745702,21745987..21746065, 21746154..21746270) /locus_tag="TCM_029286" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene15893; paralog of Thecc1EG011819t1" /codon_start=1 /product="Rad23 UV excision repair protein family isoform 1" /protein_id="EOY27440.1" /db_xref="TAIR:AT1G79650.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84L33" /translation="MKLTVKTLKGSHFEIRVQPNDTVMAVKKNIEDAQGKDNYPCGQQ LLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKSLGSAGTSSAQPASSTPSVTPPAS NPAPAPEAPAQAPTSKGTTSASDTATANPNTDTYSQAASNLVAGNNLEQTIQQLMDMG GGNWDKETVTRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFPTSQTTETGAAPAA PVSGAPNSSPLNMFPQETLSGAGAGGLGSLDFLRNNQQFQALRSMVQSNPQILQPMLQ ELGKQNPQLLRLIQEHHAEFLQLINEPLEGSEGDIFDQAEQDMPHAINVTPAEQEAIE RLEAMGFDRALVIEAFLACDRNEELAANYLLENAGDFED" CDS join(21742999..21743064,21743178..21743339, 21743864..21743902,21743997..21744073,21744160..21744204, 21744784..21744961,21745057..21745191,21745294..21745359, 21745466..21745513,21745605..>21745697) /locus_tag="TCM_029286" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene15893; paralog of Thecc1EG019468t2" /codon_start=1 /product="Rad23 UV excision repair protein family isoform 2" /protein_id="EOY27441.1" /db_xref="TAIR:AT1G79650.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84L33" /translation="MKLTVKTLKGSHFEIRVQPNDTVMAVKKNIEDAQGKDNYPCGQQ LLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKSLGSAGTSSAQPASSTPSVTPPAS NPAPAPEAPAQAPTSKGTTSASDTATANPNTDTYSQAASNLVAGNNLEQTIQQLMDMG GGNWDKETVTRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFPTSQTTETGAAPAA PVSGAPNSSPLNMFPQETLSGAGAGGLGSLDFLRNNQQFQALRSMVQSNPQILQELGK QNPQLLRLIQEHHAEFLQLINEPLEGS" gene complement(21746117..21750350) /locus_tag="TCM_029287" /note="dbxref CacaoGD:Thecc1EG029287" mRNA complement(join(21746117..21746139,21746588..21747077, 21747387..21747627,21748285..21748459,21748535..21748646, 21748809..21749048,21749708..21749944,21750145..21750350)) /locus_tag="TCM_029287" /product="Serinc-domain containing serine and sphingolipid biosynthesis protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016078001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020499t1" /inference="similar to AA sequence:Phytozome:Glyma08g46830.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b028324t1a2; alternateUTRof:Thecc1EG029287t1; inference alignment:Newbler:10:TSA:cgbaP1_g02515t00001" mRNA complement(join(21746523..21747077,21747387..21747627, 21748285..21748459,21748535..21748646,21748809..21749048, 21749708..21749947,21750145..21750350)) /locus_tag="TCM_029287" /product="Serinc-domain containing serine and sphingolipid biosynthesis protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016078001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020499t1" /inference="similar to AA sequence:Phytozome:Glyma08g46830.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02515t00001" CDS complement(join(21746788..21747077,21747387..21747627, 21748285..21748459,21748535..21748646,21748809..21749048, 21749708..21749891)) /locus_tag="TCM_029287" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG020499t1" /codon_start=1 /product="Serinc-domain containing serine and sphingolipid biosynthesis protein isoform 1" /protein_id="EOY27442.1" /db_xref="Phytozome:Glyma08g46830.1" /db_xref="TAIR:AT1G16180.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S9L9" /translation="MWAASCLASCCAACACDACRTVVSGISRRSARIAYCGLFALSLI VSWILREVAAPLMEKLPWINHFHKTPNREWFETDAVLRVSLGNFLFFTILSFLMIGVK NQRDPRDGLHHGGWMMKVICWFILVILMFFVPNEIISFYETISKFGSGLFLLVQVVLL LDFVHGWNDKWVGYDEQFWYVALFVVSLVCYLGTLGFSGLLFHWFTPSGQDCGLNTFF IVMTLIVVLLFAIVALHPAVGGSILPASVISLYCMYLCYSGLASEPRDYECNGLHKHS KAISTGTLTFGLLTTVLSVVYSAVRAGSSTTLLSPPSSPRAGAGKSLLPLDKADEQEE KDKNKPVTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRIITGW ATAGLYLWSLIAPILFPEREF" CDS complement(join(21746788..21747077,21747387..21747627, 21748285..21748459,21748535..21748646,21748809..21749048, 21749708..21749891)) /locus_tag="TCM_029287" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG020499t1" /codon_start=1 /product="Serinc-domain containing serine and sphingolipid biosynthesis protein isoform 1" /protein_id="EOY27443.1" /db_xref="Phytozome:Glyma08g46830.1" /db_xref="TAIR:AT1G16180.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S9L9" /translation="MWAASCLASCCAACACDACRTVVSGISRRSARIAYCGLFALSLI VSWILREVAAPLMEKLPWINHFHKTPNREWFETDAVLRVSLGNFLFFTILSFLMIGVK NQRDPRDGLHHGGWMMKVICWFILVILMFFVPNEIISFYETISKFGSGLFLLVQVVLL LDFVHGWNDKWVGYDEQFWYVALFVVSLVCYLGTLGFSGLLFHWFTPSGQDCGLNTFF IVMTLIVVLLFAIVALHPAVGGSILPASVISLYCMYLCYSGLASEPRDYECNGLHKHS KAISTGTLTFGLLTTVLSVVYSAVRAGSSTTLLSPPSSPRAGAGKSLLPLDKADEQEE KDKNKPVTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRIITGW ATAGLYLWSLIAPILFPEREF" gene 21751522..21753903 /locus_tag="TCM_029288" /note="dbxref CacaoGD:Thecc1EG029288" mRNA join(21751522..21751868,21753127..21753903) /locus_tag="TCM_029288" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s18520.1" /inference="similar to AA sequence:ricco:30131.m006907" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc864t3" mRNA join(21751733..21751868,21753127..21753469, 21753563..21753793) /locus_tag="TCM_029288" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s18520.1" /inference="similar to AA sequence:ricco:30131.m006907" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01560t00002; alternateUTRof:Thecc1EG029288t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc864t3" CDS 21753161..21753448 /locus_tag="TCM_029288" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30131.m006907" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27444.1" /db_xref="TAIR:AT1G79660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HBX9" /translation="MVLDGIVSSPHRRSGSIRKQFQKDELGSWSTLVHRHRFLLTALG LLAFLCTIYLYFAVTLGATADTCSGLTGTQKATCKLQHARSTLSHGKLKFL" CDS 21753161..21753448 /locus_tag="TCM_029288" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30131.m006907" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27445.1" /db_xref="TAIR:AT1G79660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HBX9" /translation="MVLDGIVSSPHRRSGSIRKQFQKDELGSWSTLVHRHRFLLTALG LLAFLCTIYLYFAVTLGATADTCSGLTGTQKATCKLQHARSTLSHGKLKFL" gene complement(21754479..21755979) /locus_tag="TCM_029290" /note="dbxref CacaoGD:Thecc1EG029290" mRNA complement(join(21754479..21754681,21754778..21754852, 21754998..21755177,21755907..21755979)) /locus_tag="TCM_029290" /product="Zinc-binding ribosomal protein family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s09520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007734t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012054001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g12020t00001" CDS complement(join(21754622..21754681,21754778..21754852, 21754998..21755177,21755907..21755909)) /locus_tag="TCM_029290" /note="paralog of Thecc1EG007734t1" /codon_start=1 /product="Zinc-binding ribosomal protein family protein" /protein_id="EOY27446.1" /db_xref="Phytozome:GSVIVT01012054001" /db_xref="TAIR:AT4G14320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HF51" /translation="MVNVPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYD RKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQACKHVSQHPIKRCKHFEIGGDKKGKGT SLF" gene 21756364..21756788 /locus_tag="TCM_029291" /note="dbxref CacaoGD:Thecc1EG029291" mRNA 21756364..21756788 /locus_tag="TCM_029291" /product="Histone superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400000792.8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021970t2" /inference="similar to AA sequence:Phytozome:POPTR_0168s00200.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g14550t00001" CDS 21756431..21756742 /locus_tag="TCM_029291" /note="paralog of Thecc1EG021970t2" /codon_start=1 /product="Histone superfamily protein" /protein_id="EOY27447.1" /db_xref="Phytozome:POPTR_0168s00200.1" /db_xref="TAIR:AT5G59970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P62805" /translation="MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG G" mobile_element 21757584..21757895 /note="source:CACAO_on_E175_scaffold_1 446 746" /mobile_element_type="transposon:TIR/hAT" mobile_element 21757810..21758003 /note="source:INTACT51_F23_scaffold_9-int 5257 5444" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21757964..21758423) /note="source:CACAO_on_S_E390_scaffold_9 2388 2850" /mobile_element_type="transposon:TIR/Mutator" gene complement(21763856..21765360) /locus_tag="TCM_029293" /note="dbxref CacaoGD:Thecc1EG029293" mRNA complement(join(21763856..21764372,21764738..21765360)) /locus_tag="TCM_029293" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s43590.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s15670.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08741t00001" CDS complement(join(21763896..21764372,21764738..21764896)) /locus_tag="TCM_029293" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27448.1" /db_xref="Phytozome:POPTR_0011s15670.1" /db_xref="TAIR:AT1G79160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0T6" /translation="MAADVSSSLVRVLNGHIEEQPQIHAGNSDILITKDLLGSLSKAA TKEIDLEFKPGKAQTQRCSSPKSPLSAPASSSSSDGKSKNQLPNSFQDSQFQDLNFPP VNFFEDTSLDLKLQSSTPSRYQSVCTLDKVKYALERAEKETMKKRSSSPPPSSLPATS SSTPGMFAAACPGCLLYVIASNTNPRCPRCNSIVPSALAVKKPRIDLNASF" gene 21768301..21768813 /locus_tag="TCM_029294" /note="dbxref CacaoGD:Thecc1EG029294" mRNA 21768301..21768813 /locus_tag="TCM_029294" /product="SAUR-like auxin-responsive protein family, putative" /inference="alignment:exonerate- protein:2:ricco:30160.m000432" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5524t1" CDS 21768397..21768693 /locus_tag="TCM_029294" /codon_start=1 /product="SAUR-like auxin-responsive protein family, putative" /protein_id="EOY27449.1" /translation="MLRQLSRRRASYRRLNMQGADKEKEGESVPKGYVPVMVGTGKDS AKFLIHIDIFKNDYFAGLLEIVAEEVGYENPGILRIPCDADCFRNLLNEISRVN" mobile_element 21771070..21771166 /note="source:scaffold_5_CACTA_0581 8103 8193" /mobile_element_type="transposon:TIR/CACTA" gene complement(21772408..21773103) /locus_tag="TCM_029295" /note="dbxref CacaoGD:Thecc1EG029295" mRNA complement(21772408..21773103) /locus_tag="TCM_029295" /product="SAUR-like auxin-responsive protein family, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb08g022330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032976t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s09920.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1562t1" CDS complement(21772698..21773048) /locus_tag="TCM_029295" /note="paralog of Thecc1EG032976t1" /codon_start=1 /product="SAUR-like auxin-responsive protein family, putative" /protein_id="EOY27450.1" /db_xref="Phytozome:POPTR_0005s09920.1" /db_xref="TAIR:AT1G56150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E4MXG8" /translation="MKKLMRRLSRVKVNHSTQYSVLRSEPPDPVEPTKLRSDVPQGHF PVYVGIDQGRRFIISAEMLRHPIFVELLNRSAQEYGYEQRGVLRIPINDVVFERVLES LRQGQEPSSLDELV" gene complement(21774913..21778213) /locus_tag="TCM_029296" /note="dbxref CacaoGD:Thecc1EG029296" mRNA complement(join(21774913..21776082,21777989..21778213)) /locus_tag="TCM_029296" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002090t1" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.14 coverage" CDS complement(21775719..21776009) /locus_tag="TCM_029296" /note="paralog of Thecc1EG002090t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27451.1" /translation="MANSLGNRQIWRMAWYAITWAIWTTRNDILFIGKIWDEKQIFEL LKLRVAYWVNAKWPNHNGSIGDLAGLSSEGTTPAKNKNAKEKMGWTKPLTED" mobile_element complement(21778150..21778343) /note="source:CACAO_PIF_E119_scaffold_3 4501 4684" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 21778343..21778804 /note="source:CACAO_on_S_E390_scaffold_9 2394 2850" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(21778875..21779184) /note="source:CACAO_on_E175_scaffold_1 446 736" /mobile_element_type="transposon:TIR/hAT" mobile_element 21779195..21779256 /note="source:scaffold_9_CACTA_0946 3571 3632" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21779286..21779351 /note="source:scaffold_9_CACTA_0942 5201 5266" /mobile_element_type="transposon:TIR/CACTA" gene 21779958..21783879 /locus_tag="TCM_029297" /note="dbxref CacaoGD:Thecc1EG029297" mRNA join(21779958..21780159,21780256..21780369, 21780445..21780525,21781957..21782061,21782359..21782412, 21783473..21783879) /locus_tag="TCM_029297" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00428t00001; inference alignment:Newbler:10:TSA:cgbaB_g00428t00001" mRNA join(<21780101..21780159,21780256..21780316, 21780445..21780525,21781957..21782061,21782359..21782412, 21783473..21783879) /locus_tag="TCM_029297" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00428t00002; inference alignment:Newbler:10:TSA:cgbaB_g00428t00001; inference alignment:Newbler:10:TSA:cgbaP2_g00325t00001" CDS join(<21780101..21780159,21780256..21780316, 21780445..21780525,21781957..21782061,21782359..21782412, 21783473..21783706) /locus_tag="TCM_029297" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY27453.1" /translation="SKTPEAALLFLPSSSTLKTWWRRTRELCLLTWAQMESCVNITGY LNNNTEMLFKKMVWEAMNKDYRKQKQKKPTTGKKSTSAKKAVASRMEKRKEEGKENKK RLSSKINYDALEKLSDEPEEVAEKTKKNSIDSHWSNQIDTQQSRGTSGTSGLEICGFE EDIFSDEVEPENSNLYSYGDGEEDGYGYREDYDYEEF" CDS join(21780157..21780159,21780256..21780369, 21780445..21780525,21781957..21782061,21782359..21782412, 21783473..21783706) /locus_tag="TCM_029297" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27452.1" /translation="MVEKNAGALSFNVGTNGVLRKRKSLSESDGDLSDIDDAEITGYL NNNTEMLFKKMVWEAMNKDYRKQKQKKPTTGKKSTSAKKAVASRMEKRKEEGKENKKR LSSKINYDALEKLSDEPEEVAEKTKKNSIDSHWSNQIDTQQSRGTSGTSGLEICGFEE DIFSDEVEPENSNLYSYGDGEEDGYGYREDYDYEEF" mobile_element 21782407..21782456 /note="source:scaffold_8_CACTA_0853 3734 3784" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21782416..21782478 /note="source:CACAO_PIF_E144_scaffold_10 6002 6065" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 21784335..21798986 /locus_tag="TCM_029298" /note="dbxref CacaoGD:Thecc1EG029298" mRNA join(21784335..21784370,21787038..21787712, 21790047..21790236,21790591..21790662,21790844..21790915, 21791444..21791515,21792226..21792297,21792391..21792462, 21792577..21792651,21792771..21792842,21792966..21793037, 21793175..21793246,21793338..21793409,21793541..21793606, 21794324..21794386,21794643..21794687,21794873..21794934, 21795052..21795434,21795592..21795787,21795884..21796045, 21796802..21796920,21797038..21797248,21797519..21797750, 21797852..21798002,21798109..21798986) /locus_tag="TCM_029298" /product="Leucine-rich repeat transmembrane protein kinase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029722001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029302t1" /inference="similar to AA sequence:Phytozome:GSVIVT01037982001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1174t8_C1" mobile_element 21785594..21785785 /note="source:CACAO_Again_on_S_E162_scaffold_5 1 199" /mobile_element_type="transposon:TIR/hAT" CDS join(21787601..21787712,21790047..21790236, 21790591..21790662,21790844..21790915,21791444..21791515, 21792226..21792297,21792391..21792462,21792577..21792651, 21792771..21792842,21792966..21793037,21793175..21793246, 21793338..21793409,21793541..21793606,21794324..21794386, 21794643..21794687,21794873..21794934,21795052..21795434, 21795592..21795787,21795884..21796045,21796802..21796920, 21797038..21797248,21797519..21797750,21797852..21798002, 21798109..21798498) /locus_tag="TCM_029298" /note="paralog of Thecc1EG029302t1" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase" /protein_id="EOY27454.1" /db_xref="Phytozome:GSVIVT01037982001" /db_xref="TAIR:AT1G56130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H1S5" /translation="MILRLKPPSSSICLLLFIVFFSCSKSNAQNATTDPSEVRALNTI FQKWDTQAVASWNISGEPCSGLALSPSDSVLEDPENNPAIRCDCSFNSNTLCHITRLR VYALDRRGVIPEELLDFPFLTFLKIDQNFFSGPLPAFIGNMSRLEILSIAHNDFSGPI PKELGSLKALNMLSFGHNNFSGTLPPELGNLVNLQEIYINSCGLGGEIPSTFANLEKL ETVWASDVAFTGNIPNFIGNNWTKLTTLRLEGNSFAGPIPSSFANLTSLTSLRIGGIY NGSSSLGFVRNLRNLTDLVLRNVLLTGNLPSFITELQSLQKLDFSFNNLTGQIPSALF NMNSLENLFLGNNSLSGTLPTQKSDTLQTIDLSYNFLSGNLPSWINSGLQLNLVANNF TSNSSNIRLLQGLECLQRSFPCNRNTPRYANFSIKCGGPQMISNGIVFEAENSTTFGA ASFNVTSTQKWAVSNAGLFADRQNQKYVENTFAQVRNTGTPELYQTSRLSPGSLRYYG LGLQNGLYTVNLFFAETGFPDRSTQTWKSLARRVFDVYVQGTRQLRDFDISKEAGGVQ RAITKNFTANVTENHLEIHLFWAGKGTCCEPEQGYYGPSISAISVVPNFKPTVSGIPP GTPKKKNQTALIVGIAVPVAVVALILIFAIIYVKRRKEDDDEEVFLGIGPRPNTFSYS ELKAATEDFSPSRKLGEGGFGPVYKGTLSDGRVVAVKQLSVASHQGKDQFATEIATIS AVQHRNLVKLYGCCIEGNRRLLVYEYLENKSLDQALFGDNYLHLDWPTRFNVCLSTAR GLAYLHEESRPRIVHRDVKASNILLDAELCPKISDFGLAKLYDDKKTHISTRVAGTIG YLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDNSLENDRIYLLEWAWTLHENNQ SLGLVDPSLVEFDENEALRMIGVALLCTQASPAMRPPMSRVVAMLAGDIEVSSVTSKP SYLTDWHFKDITGTFMSEETQTSIASDNSDIKSGKSKTMSGTEPVLSPANVTEFADII GDGR" mobile_element complement(21798722..21798826) /note="source:INTACT1604F_F75_scaffold_10-int 5443 5561" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21798808..21799121 /note="source:CACAO_Again_on_E210_scaffold_9 1 340" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(21798846..21800135) /note="source:CACAO_Again_on_E207_scaffold_9 480 1792" /mobile_element_type="transposon:TIR/hAT" mobile_element 21799439..21800631 /note="source:CACAO_Again_on_E124_scaffold_5 208 1276" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(21800632..21802049) /note="source:INTACT1604F_F75_scaffold_10-int 4044 5491" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21802046..21802302) /note="source:INTACT1604F_F75_scaffold_10-int 3403 3660" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21802296..21805849) /note="source:INTACT1604F_F75_scaffold_10-int 478 4042" /mobile_element_type="retrotransposon:LTR/Copia" gene 21804608..21841497 /locus_tag="TCM_029299" /note="dbxref CacaoGD:Thecc1EG029299" mRNA join(21804608..21804815,21810559..21810798, 21813333..21813522,21814343..21814414,21815019..21815090, 21815856..21815927,21816033..21816104,21816207..21816296, 21816406..21816477,21816606..21816677,21816759..21816830, 21816925..21816990,21817143..21817208,21817510..21817572, 21817825..21817869,21818017..21818078,21818204..21818583, 21818710..21818905,21818985..21819146,21819456..21819574, 21819690..21819900,21820207..21820438,21820850..21821000, 21821103..21821482,21828579..21828674,21831909..21831980, 21832451..21832522,21833309..21833380,21833486..21833557, 21833661..21833750,21833857..21833928,21834077..21834148, 21834272..21834343,21834432..21834503,21834647..21834712, 21835022..21835084,21835678..21835709,21835835..21835995, 21836339..21836534,21836614..21836784,21837415..21837533, 21837648..21837858,21838166..21838397,21838812..21838966, 21839705..21840170,21840868..21841497) /locus_tag="TCM_029299" /product="Leucine-rich repeat transmembrane protein kinase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01037982001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029302t1" /inference="similar to AA sequence:Phytozome:GSVIVT01037993001" /note="quality class is medium, express is weak, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.15 coverage" mobile_element 21805849..21807772 /note="source:CACAO_Mariner_E180_scaffold_6 6249 8162" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 21807908..21808938 /note="source:INTACT329_F199_scaffold_2-int 824 1893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21808948..21809405) /note="source:INTACT399_F75_scaffold_3-int 5022 5487" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(21810615..21810798,21813333..21813522, 21814343..21814414,21815019..21815090,21815856..21815927, 21816033..21816104,21816207..21816296,21816406..21816477, 21816606..21816677,21816759..21816830,21816925..21816990, 21817143..21817208,21817510..21817572,21817825..21817869, 21818017..21818078,21818204..21818583,21818710..21818905, 21818985..21819146,21819456..21819574,21819690..21819900, 21820207..21820438,21820850..21821000,21821103..21821482, 21828579..21828674,21831909..21831980,21832451..21832522, 21833309..21833380,21833486..21833557,21833661..21833750, 21833857..21833928,21834077..21834148,21834272..21834343, 21834432..21834503,21834647..21834712,21835022..21835084, 21835678..21835709,21835835..21835995,21836339..21836534, 21836614..21836784,21837415..21837533,21837648..21837858, 21838166..21838397,21838812..21838966,21839705..21840170, 21840868..21840931) /locus_tag="TCM_029299" /note="paralog of Thecc1EG029302t1" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase" /protein_id="EOY27455.1" /db_xref="Phytozome:GSVIVT01037993001" /db_xref="TAIR:AT1G56130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H1S5" /translation="MGTRCIYIPISLFVKERKRMIMSTKMPSSSKWFFFFFFVISFIA CSISNAQTQNATTDPSEVRALNSIFQQWEALAPETWNISGEPCSGLALSDSDSVFEDS SNNPSIRCDCSFENGTTCHITRLKIDQNFFTGPLPTFIGNMSRLALLSVAQNSLSGPI PKEIGNLKDLYLLSLGTNNLSGTIPPELGNLVKLQQLYINSCGLTGEIPSTFANLRNL KIVLLNFRGASDNAFTGKIPDFIGNNWTTLQSLRLEGNSFEGPIPSNIGNLTSLTILR ISGIYNGSSSLDFVRKLKNIADLVLRNVLLTGSIPTDIAEFQALQKLDLSFNNLTGQI PSELFNMNSLTFLGNNSLSGTLPSQKSQSLKNIDVSYNHLSGTLPSWMDSSLQLNVVA NNFTLNSSDIRLLPGLQCLQTGFPCNRNAPRYANFAIKCGGPQMIADGILFEAENSTL GAATFNVTSTQKWAVSNVGLYEDRENPMYVQNTFAQVKSTNTPEIYQTSRISPLSLRY YGLGLENGPYTVNLFFAETAYPDRSTQSSKSLGRRVFDIYIQGSLKVKDFDISKEAGG AERAIARNFTANVTENHLEIHLFWAGKGTCCVPELGYYGPSISAISVVPDFIPTVSGL PPGSSKRKNRAALIVGVVVPVGVAALILICVIIHFERKKEYDDEEVLLAIGPRPNTFS YAELKAATEDFSPSNKLGEGGFGAVYRGTLSDGRVVAVKQLSVASHQGKGQFIAEVAT ISAVQHRNLVKLYGCCIEGKRHLLVYEYLENKSLDQALFGRSDLHLDWATRFNICLAT ARGLAYLHEESRPRIVHRDVKASNILLDAELCPKISDFGLAKLYDDKKTHISTGVAGT IGYLAPEYAMRGHLTEKADVFGFGIVALEILSGRPNSDNSLEDGKIYLLEWAWALHEN NQSLDLVDPNLVELDENEALRVMGVALLCTQGSPTMRPPMSRVVAMLAGDIEVNGVIK RPSYLTDWDFKDLTGSFMTEDTQNSIASENIDNNGNININPRAAPNLSSVNVTECSDV MEGSISNAQIQNATTDPSEGNRFLSLYISASLQNPRKIDQNFFIGPLPAFIGNMSRLT LLSVAHNSLSGPIPKEIGNLKDLYLLSLGVNNFSGTLPPELGNLVELQQLYINSCGFT GEIPSTFANLRNLQTVLLNFRGASDNAFTGKIHDFVGNNWTKLQSLRLEGNSFEGPIP SNIGNLTSLTILRVSGICNGGSSLDFMRNLKNIVDLVLRNVLLNGSIPTDIVEFQSLQ KLDLSFNNLTGQIPSELFNMNSLTYLFLGNSSLSGTLPSQKSQSLKDIDVSYNNLSGT LPSWIDSSLQLGFPCNRNAPRYANFAIKCGGPQMIADGILFEAENSTLGAATFNVTST QKWAVSNVGLYEDGESTGSLKVKDFDISKEAGGAERAIARNFTANVTENHLEIHLFWA GRGTCCVPELGYYGPSISAISVVPDFIPTVSGLPPGSSNRKNQTALIACIIVPVGVAA LMLICVIIFIKRRKEYDDDDDEEVLLAIGPRPNTFSYAELKAATEDFSPSNKLGEGGF GAVYKDTLSDRRVVAVKQLSVASHQGKGQFIAEVATISAVQHRNLVKLYGCCIEGKRH LLVYEYLENKSLDQALFGRSDLHLDWATRFNICLATARGLAYLHEESRPRIVHRDVKA SNILLDAELCPKISDFGLAKLYDDKKTHISTGVAGTIGYLAPEYAMRGHLTEKADVFG FGIVALEILSGRPNSDNSLEDDKIYLLEWVTMDHADGSLRVGAGFIIRRPNDDFLCAA GRKIQYCASVEEAKLRALVWALSFCVKKQITIADIYLDSQVVTGWIKKQQFFGALGHL IEDCAILTERINCQAIDFCPRESNKTAHSIAQIAKRMMDEMIEWKNSSHLPVLIQEAI DVDRDLFIRYEGCCTNSFFSNVTEFSDIVEGK" mobile_element complement(21835422..21835509) /note="source:CACAO_Again_on_E207_scaffold_9 317 405" /mobile_element_type="transposon:TIR/hAT" mobile_element 21839050..21839430 /note="source:INTACT241_F183_scaffold_6-int 5258 5638" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21845289..21850085) /note="source:INTACT1604F_F75_scaffold_10-int 503 5317" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21850072..21850355) /note="source:INTACT1604F_F75_scaffold_10-int 1 286" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21850433..21850577) /note="source:CACAO_Mutator_E1376_scaffold_6 1879 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(21850699..21850858) /note="source:CACAO_Mutator_E1376_scaffold_6 1864 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(21853580..21855649) /note="source:INTACT477_F225_scaffold_9-int 2800 6021" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21856285..21859001) /note="source:INTACT477_F225_scaffold_9-int 1 2783" /mobile_element_type="retrotransposon:LTR/Copia" gene 21858819..21870573 /locus_tag="TCM_029302" /note="dbxref CacaoGD:Thecc1EG029302" mRNA join(21858819..21858943,21860152..21860394, 21861628..21861817,21862356..21862427,21862657..21862728, 21863211..21863282,21864531..21864602,21864708..21864779, 21864898..21864972,21865090..21865161,21865287..21865358, 21865490..21865561,21865658..21865723,21865876..21865941, 21866239..21866301,21866560..21866604,21866760..21866821, 21866946..21867325,21867453..21867648,21867728..21867892, 21868522..21868640,21868756..21868966,21869274..21869505, 21869918..21870068,21870175..21870573) /locus_tag="TCM_029302" /product="Leucine-rich repeat transmembrane protein kinase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029724001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029304t1" /inference="similar to AA sequence:Phytozome:GSVIVT01037982001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1048t1" mobile_element complement(21859143..21859513) /note="source:CACAO_Mutator_E1888_scaffold_9 7432 7808" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(21859186..21859784) /note="source:INTACT135F_F90_scaffold_2-int 13353 13928" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(21860250..21860394,21861628..21861817, 21862356..21862427,21862657..21862728,21863211..21863282, 21864531..21864602,21864708..21864779,21864898..21864972, 21865090..21865161,21865287..21865358,21865490..21865561, 21865658..21865723,21865876..21865941,21866239..21866301, 21866560..21866604,21866760..21866821,21866946..21867325, 21867453..21867648,21867728..21867892,21868522..21868640, 21868756..21868966,21869274..21869505,21869918..21870068, 21870175..21870522) /locus_tag="TCM_029302" /note="paralog of Thecc1EG029304t1" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase" /protein_id="EOY27456.1" /db_xref="Phytozome:GSVIVT01037982001" /db_xref="TAIR:AT1G56130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H1S5" /translation="MKERKMMIMSTKAPSSSKCFSFFVFVIFFVAFSISNAQTQNATT DPSEVRALNSIFQQWETQAPDTWNISGEPCSGRALSDSDSAFEDSSNNPAIRCDCSFE NGTICHITRLRVFSLEKRGQIPEELLALRFLTFLKIDQNFFTGPLPAFIGNMSRLALL SVAQNSLSGPIPKEIGNLKELYMLSLGINNFSGTLPPELGNLVELQQLYINSCGFTGE IPSTFANLRNLQIVYASDNALTGKIPDFIGNNWTKLASLKLEGNSFEGPIPSNIGNLT SLTILRISGIYNGSSSLVFVRNLKNIADLVLRNVLLTGSISTDIVEFQSLQKLDLSFN NLTGQIPSELFNMNSLTFLGNNSLSGTLPSQKSQSLKNIDVSYNHLSGNLPSWIDSTL QLNVVANNFTLNSSDIRLLPGLQCLQRGFPCNRNAPRYANFAIKCGGPQMTADGILFE AENSTLGAATFNVTSTQKWAVSNVGLYEDRENPLYVQNTFAQVKSTNTPAIYQTSRIS PVSLRYYGLGLENGPYTVNLFFAETAYPERSTQSWKSLGRRVFDIYIQGSLKVKDFDI SKEAGGAERAITRNFTANVTENHLEIHLFWAGKGTCCVPEFGYYGPSISAISVVPDFI PTVSGLPAGSSNRKNQTALIVGIIVPVGVAALILICVIIFIKRRKKYDDDEEVLLAIG TRPNTFSYAELKAATEDFSPSNKLGEGGFGAVYKGTLSDGRVVAVKQLSVASHQGKSQ FIAEVATISAVQHRNLVKLYGCCIEGKRHLLVYEYLENKSLDQALFGRSDLHLDWATR FNICLATARGLAYLHEESRPRIVHRDVKASNILLDAELCPKISDFGLAKLYDDKKTHI STRVAGTIGYLAPEYAMRGHLTEKVDVFGYGIVALEILSGRPNTDNSLEDNKIYLLEW AWALHENNQSLDLVDPNLVELDENEALRVMGVALLCTQGSPTMRPPMSRVIAMLAGDI EVSGVITRPSYLTDWDFKDLTGRFMTEDTQNSIASENTAPIPSSVNETEFSGIVEGR" mobile_element complement(21860579..21861040) /note="source:INTACT797_F74_scaffold_28-int 298 753" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21861013..21861419) /note="source:CACAO_M_E22982_F74_scaffold_4 2104 2520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21863347..21863428) /note="source:INTACT1638F_F98_scaffold_10-int 2032 2121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21863396..21863443 /note="source:scaffold_4_CACTA_0505 16323 16370" /mobile_element_type="transposon:TIR/CACTA" gene complement(21870611..21872834) /locus_tag="TCM_029303" /note="dbxref CacaoGD:Thecc1EG029303" mRNA complement(join(21870611..21870703,21870939..21871270, 21871416..21871753,21872086..21872392,21872780..21872834)) /locus_tag="TCM_029303" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.95 coverage" CDS complement(join(21872111..21872392,21872780..21872797)) /locus_tag="TCM_029303" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27457.1" /translation="MIGHHKGVKTRDTKRFRRLRKKGIKGLNKKIFSSNSKSSAVNTS ISDGDIINRAEKISRKAQGIWCMVTHLGFSPKGLEKQVLSKLKEMERNVRRSKRK" mobile_element complement(21873156..21873223) /note="source:scaffold_9_CACTA_0943 9058 9123" /mobile_element_type="transposon:TIR/CACTA" gene 21874089..21893618 /locus_tag="TCM_029304" /note="dbxref CacaoGD:Thecc1EG029304" mRNA join(21874089..21874604,21882467..21882723, 21883262..21883333,21883563..21883634,21884114..21884185, 21885017..21885088,21885194..21885265,21885369..21885458, 21885582..21885653,21885779..21885850,21885982..21886053, 21886150..21886215,21886368..21886433,21886731..21886793, 21887250..21887311,21887437..21887816,21888021..21888216, 21888296..21888460,21889090..21889208,21889324..21889534, 21889842..21890073,21890488..21890638,21890745..21891124, 21892862..21893618) /locus_tag="TCM_029304" /product="Leucine-rich repeat transmembrane protein kinase" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029302t1" /inference="similar to AA sequence:Phytozome:GSVIVT01037982001" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.22 coverage" mobile_element 21876806..21877352 /note="source:CACAO_Again_on_S_E16_scaffold_1 1 538" /mobile_element_type="transposon:TIR/hAT" mobile_element 21877306..21877579 /note="source:scaffold_6_CACTA_0713 583 848" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21877352..21878473 /note="source:CACAO_Again_on_E108_scaffold_4 1 1122" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(21878470..21878701) /note="source:CACAO_on_E216_scaffold_4 37 260" /mobile_element_type="transposon:TIR/hAT" mobile_element 21878471..21878611 /note="source:CACAO_Again_on_E20_scaffold_1 529 663" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(21878612..21878715) /note="source:CACAO_MITE_S26_scaffold_1 13 113" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(21878707..21878896) /note="source:CACAO_on_E231_scaffold_7 1 197" /mobile_element_type="transposon:TIR/hAT" mobile_element 21878716..21878844 /note="source:CACAO_Again_on_E20_scaffold_1 664 789" /mobile_element_type="transposon:TIR/hAT" mobile_element 21879746..21882318 /note="source:CACAO_M_S_E84654_F74_scaffold_6 1 2573" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(21882515..21882723,21883262..21883333, 21883563..21883634,21884114..21884185,21885017..21885088, 21885194..21885265,21885369..21885458,21885582..21885653, 21885779..21885850,21885982..21886053,21886150..21886215, 21886368..21886433,21886731..21886793,21887250..21887311, 21887437..21887816,21888021..21888216,21888296..21888460, 21889090..21889208,21889324..21889534,21889842..21890073, 21890488..21890638,21890745..21891124,21892862..21893435) /locus_tag="TCM_029304" /note="paralog of Thecc1EG029302t1" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase" /protein_id="EOY27458.1" /db_xref="Phytozome:GSVIVT01037982001" /db_xref="TAIR:AT1G56140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H1S5" /translation="MNGKLTVRALNSIFQQWETQAPDTWNISGEPCSGRALSDSDSVF EDSSNNPAIRCDCSFEKGTICHITRLRVFSLEKRGQIPEELLALRFLTFLKIDQNFFT GPLPAFIGSMSRLALLSVAQNSLSGPIPKEIGNLKELYMLSLGINNFSGTLPPELGNL VELQQLYINSCGFTGEIPSTFANLRNLQIVLLNFRYASDNALTGKIPDFIGNNWTKLA SLKLEGNSFEGPIPSNIGNLTSLTILRISGIYNGSSSLDFVRNLKNIADLVLRNVLLT GSIPTDIVEFQSLQKLDLSFNNLTGQIPSELFNKNSLTFLGNNSLSGTLPSQKSQSLK NIDVSYNHLSGNLPSWIDSSLQLLLPGLQCLQRGFPCNRNAPRYANFAIKCGGPQMTA DGILFEAENSTLGAATFNVTSTQKWAVSNVGLYEDRENPLYVQNTFAQVKSTNTPAIY QTSRISPVSLRYYGLGLENGPYTVNLFFAETAYPERSTQSWKSLGRRVFDIYIQGSLK VKDFDISKEAGGAERAITRNFTANVTENHLEIHLFWAGKGTCCVPEFGYYGPSISAIS VVPDFKPTVSGLPPSSSNRKKQTALIVGIIVPVGVAALILICVIIFIKRRKEYDDDEE VLLAIGPRPNTFSYAELKAATEDFSPSNKLGEGGFGAVYKGTLSDGRVVAVKQLSVAS HQGKSQFIAEVATISAVQHRNLVKLYGCCIEGKRHLLVYEYLENKSLDQALFGRSDLH LDWATRFNICLATARGLAYLHEESRPRIVHRDVKASNILLDAELCPKISDFGLAKLYD DKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGIVALEILSGRPNTDNSLKDDK IYLLEWAWALHENNQSLDLVDPNLVGSDENEALRVMGVALLCTQGSPTMRPPMSRVVA MLAGDIEVSGVITKPSYLTDWDFKDLTGSFMTEDTQNSIATENTDNNSNININPGAAP NLSSVNVTEFSDIIEGRYGHIKRDCPTKGDESNENKGECAFVAEGDDCDVLTISENMD ANSYWYLNSASATHICYQKDCFDLLQEGVAGNLTLGNKSIVKVMGLEVVKIKMFDGVV RSLDGMAYVPKMRKNLISLNLLNSKGYGYSACDGVVKVTQRDMVLMRGNLHNGLYHLE CEASKGWEQCTRDGSYQSEISFAEEVMKGWCRR" mobile_element complement(21884250..21884325) /note="source:INTACT1638F_F98_scaffold_10-int 2038 2121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21884295..21884340 /note="source:scaffold_4_CACTA_0505 16325 16370" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21891631..21894217 /note="source:INTACT416_F74_scaffold_6-int 1 2587" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21900334..21900410) /note="source:CACAO_M_E69306_F123_scaffold_9 4944 5020" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21900411..21900434 /note="source:CACAO_PIF_E119_scaffold_3 2596 2698" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(21900435..21900450) /note="source:CACAO_M_E72142_F322_scaffold_10 688 803" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21903281..21903442) /note="source:CACAO_MITE33_scaffold_2 1 168" /mobile_element_type="transposon:TIR/MITE" gene 21903922..21904473 /locus_tag="TCM_029307" /note="dbxref CacaoGD:Thecc1EG029307" mRNA 21903922..21904473 /locus_tag="TCM_029307" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14790.1" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc540t1" CDS 21904195..21904407 /locus_tag="TCM_029307" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27459.1" /translation="MGYQLRRPVQQPLSHHLHTPSLTTWPMFDRGISELKLQQEQILY LGSFKKQFFGCRKKLIVRVFLLLILV" gene complement(21904623..21909888) /locus_tag="TCM_029308" /note="dbxref CacaoGD:Thecc1EG029308" mRNA complement(join(21904623..21905984,21906073..21906327, 21906768..21906882,21907148..21907200,21907288..21907548, 21907767..21907869,21907987..21908030,21908141..21908389, 21908486..21908717,21909378..21909888)) /locus_tag="TCM_029308" /product="Potassium transporter 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032570t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14800.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc354t10" mRNA complement(join(21904904..21905984,21906073..21906327, 21906768..21906882,21907148..21907200,21907288..21907548, 21907831..21907881,21908141..21908389,21908486..21908717, 21909378..21909635)) /locus_tag="TCM_029308" /product="Potassium transporter 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032570t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013617001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc354t10; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc354t10" mRNA complement(join(21904904..21905984,21906073..21906327, 21906768..21906882,21907148..21907548,21907831..21907881, 21908141..21908389,21908486..21908717,21909378..21909635)) /locus_tag="TCM_029308" /product="Potassium transporter 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032570t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013617001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc354t7; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc354t10" mRNA complement(join(21904904..21905984,21906073..21906327, 21906768..21906882,21907148..21907200,21907288..21907548, 21907831..21907881,21908141..21908717,21909378..21909635)) /locus_tag="TCM_029308" /product="Potassium transporter 1 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032570t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013617001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc354t6; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc354t10" CDS complement(join(21905005..21905984,21906073..21906327, 21906768..21906882,21907148..21907200,21907288..21907548, 21907831..21907881,21908141..21908389,21908486..21908717, 21909378..21909419)) /locus_tag="TCM_029308" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG032570t1" /codon_start=1 /product="Potassium transporter 1 isoform 2" /protein_id="EOY27461.1" /db_xref="Phytozome:GSVIVT01013617001" /db_xref="TAIR:AT2G30070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GY44" /translation="MDPEAGSVTRESRLKIYRTTLCLAYQSFGVVYGDLSTSPIYVYK STFSGRLSLHEEDDEILGVLSLVFWTLTLIPLCKYIIFVLGADDNGEGGTFALYSLLC RRAKLGLLSASDAPDDDISAYNSGLPRKETVASSILKEFFDKYQSSRIVLLLLVLLGT SMVIGDGILTPSMSVLSAVNGIKIKATGLHDNYTVLIACVILVGLFELQHVGTRRVGF LFAPILLAWLFCISVVGIYNIIHWNPRVISALSPYYVYNFFKKTGKDGWSSLGGIVLC VTGAEAMFADLGHFSQLSIRIAFTVVVYPCLILAYMGEAAYLSKHKVDLQRSFYKSIP EVVFWPVFIIATLATVVGSQAIISATFSIISQCRALKCFPRVRVIHTSNHIHGQIYIP EVNWILMVLCLAVVAGYRDTDMIGNAYGLAVITVMLVTTCLMFLVIVLVWKRNILGAV AFVIVFGSLEMSYFSACLAKVHKGGWFPLIFSLIVLSTMCIWHYGTLKKHSYESHNKV SLDMLLSMGPNLGINRVPGIGLIYSNVTTGVPPMFTHFVTNFPAFHRILIFVTIRSLT VPKVPLNQRYVISRIGPAEFRLFQCVVRYGYKDERKDSHDFESRLIETVAEFLQSGSD DSEVRALGMEFGLNQQQSSPPVDVAALGLENGISSRASKRTVRFRGVGCSKELEDLTE AKESGLAYMMGSTCILASETSSYLKKFVINIVYGFLRQNCRHPATALGIPHTSLIEVG MVYRV" CDS complement(join(21905005..21905984,21906073..21906327, 21906768..21906882,21907148..21907548,21907831..21907881, 21908141..21908389,21908486..21908717,21909378..21909419)) /locus_tag="TCM_029308" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG032570t1" /codon_start=1 /product="Potassium transporter 1 isoform 3" /protein_id="EOY27462.1" /db_xref="Phytozome:GSVIVT01013617001" /db_xref="TAIR:AT2G30070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GY44" /translation="MDPEAGSVTRESRLKIYRTTLCLAYQSFGVVYGDLSTSPIYVYK STFSGRLSLHEEDDEILGVLSLVFWTLTLIPLCKYIIFVLGADDNGEGGTFALYSLLC RRAKLGLLSASDAPDDDISAYNSGLPRKETVASSILKEFFDKYQSSRIVLLLLVLLGT SMVIGDGILTPSMSVLSAVNGIKIKATGLHDNYTVLIACVILVGLFELQHVGTRRVGF LFAPILLAWLFCISVVGIYNIIHWNPRVISALSPYYVYNFFKKTGKDGWSSLGGIVLC VTGLSITPQDKPILFKVILIRIMNIPSFNLSGAEAMFADLGHFSQLSIRIAFTVVVYP CLILAYMGEAAYLSKHKVDLQRSFYKSIPEVVFWPVFIIATLATVVGSQAIISATFSI ISQCRALKCFPRVRVIHTSNHIHGQIYIPEVNWILMVLCLAVVAGYRDTDMIGNAYGL AVITVMLVTTCLMFLVIVLVWKRNILGAVAFVIVFGSLEMSYFSACLAKVHKGGWFPL IFSLIVLSTMCIWHYGTLKKHSYESHNKVSLDMLLSMGPNLGINRVPGIGLIYSNVTT GVPPMFTHFVTNFPAFHRILIFVTIRSLTVPKVPLNQRYVISRIGPAEFRLFQCVVRY GYKDERKDSHDFESRLIETVAEFLQSGSDDSEVRALGMEFGLNQQQSSPPVDVAALGL ENGISSRASKRTVRFRGVGCSKELEDLTEAKESGLAYMMGSTCILASETSSYLKKFVI NIVYGFLRQNCRHPATALGIPHTSLIEVGMVYRV" CDS complement(join(21905005..21905984,21906073..21906327, 21906768..21906882,21907148..21907200,21907288..21907548, 21907767..21907869,21907987..21908030,21908141..21908389, 21908486..21908717,21909378..21909419)) /locus_tag="TCM_029308" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG032570t1" /codon_start=1 /product="Potassium transporter 1 isoform 1" /protein_id="EOY27460.1" /db_xref="Phytozome:POPTR_0003s14800.1" /db_xref="TAIR:AT2G30070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GY44" /translation="MDPEAGSVTRESRLKIYRTTLCLAYQSFGVVYGDLSTSPIYVYK STFSGRLSLHEEDDEILGVLSLVFWTLTLIPLCKYIIFVLGADDNGEGGTFALYSLLC RRAKLGLLSASDAPDDDISAYNSGLPRKETVASSILKEFFDKYQSSRIVLLLLVLLGT SMVIGDGILTPSMSDEPYEIEYNCFLLLDLMASKLRPPVFMIVSQTSIFDLPLECRIP FQLLQDYTVLIACVILVGLFELQHVGTRRVGFLFAPILLAWLFCISVVGIYNIIHWNP RVISALSPYYVYNFFKKTGKDGWSSLGGIVLCVTGAEAMFADLGHFSQLSIRIAFTVV VYPCLILAYMGEAAYLSKHKVDLQRSFYKSIPEVVFWPVFIIATLATVVGSQAIISAT FSIISQCRALKCFPRVRVIHTSNHIHGQIYIPEVNWILMVLCLAVVAGYRDTDMIGNA YGLAVITVMLVTTCLMFLVIVLVWKRNILGAVAFVIVFGSLEMSYFSACLAKVHKGGW FPLIFSLIVLSTMCIWHYGTLKKHSYESHNKVSLDMLLSMGPNLGINRVPGIGLIYSN VTTGVPPMFTHFVTNFPAFHRILIFVTIRSLTVPKVPLNQRYVISRIGPAEFRLFQCV VRYGYKDERKDSHDFESRLIETVAEFLQSGSDDSEVRALGMEFGLNQQQSSPPVDVAA LGLENGISSRASKRTVRFRGVGCSKELEDLTEAKESGLAYMMGSTCILASETSSYLKK FVINIVYGFLRQNCRHPATALGIPHTSLIEVGMVYRV" CDS complement(join(21905005..21905984,21906073..21906327, 21906768..21906882,21907148..21907200,21907288..21907548, 21907831..21907881,21908141..21908180)) /locus_tag="TCM_029308" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG032570t1" /codon_start=1 /product="Potassium transporter 1 isoform 4" /protein_id="EOY27463.1" /db_xref="Phytozome:GSVIVT01013617001" /db_xref="TAIR:AT2G30070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GY44" /translation="MVIGDGILTPSMSVLSAVNGIKIKATGLHDNYTVLIACVILVGL FELQHVGTRRVGFLFAPILLAWLFCISVVGIYNIIHWNPRVISALSPYYVYNFFKKTG KDGWSSLGGIVLCVTGAEAMFADLGHFSQLSIRIAFTVVVYPCLILAYMGEAAYLSKH KVDLQRSFYKSIPEVVFWPVFIIATLATVVGSQAIISATFSIISQCRALKCFPRVRVI HTSNHIHGQIYIPEVNWILMVLCLAVVAGYRDTDMIGNAYGLAVITVMLVTTCLMFLV IVLVWKRNILGAVAFVIVFGSLEMSYFSACLAKVHKGGWFPLIFSLIVLSTMCIWHYG TLKKHSYESHNKVSLDMLLSMGPNLGINRVPGIGLIYSNVTTGVPPMFTHFVTNFPAF HRILIFVTIRSLTVPKVPLNQRYVISRIGPAEFRLFQCVVRYGYKDERKDSHDFESRL IETVAEFLQSGSDDSEVRALGMEFGLNQQQSSPPVDVAALGLENGISSRASKRTVRFR GVGCSKELEDLTEAKESGLAYMMGSTCILASETSSYLKKFVINIVYGFLRQNCRHPAT ALGIPHTSLIEVGMVYRV" mobile_element 21905010..21905052 /note="source:INTACT511_F7_scaffold_4-int 1907 1955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21913156..21914181 /note="source:CACAO_Again_on_S_E195_scaffold_6 2 1029" /mobile_element_type="transposon:TIR/hAT" mobile_element 21917255..21917521 /note="source:INTACT135F_F90_scaffold_2-int 12870 13996" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21917390..21918175) /note="source:scaffold_2_CACTA_0244 12759 13472" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21917522..21917847 /note="source:scaffold_10_CACTA_0140 6425 7305" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21917848..21918417 /note="source:CACAO_M_E4753_F17_scaffold_2 7253 7818" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21922017..21926264 /locus_tag="TCM_029309" /note="dbxref CacaoGD:Thecc1EG029309" mRNA join(21922017..21922225,21923948..21926264) /locus_tag="TCM_029309" /product="Zinc finger family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400036654" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043168t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400036654" /note="quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc937t1" CDS join(21922046..21922225,21923948..21925903) /locus_tag="TCM_029309" /note="paralog of Thecc1EG043168t1" /codon_start=1 /product="Zinc finger family protein, putative" /protein_id="EOY27464.1" /db_xref="Phytozome:PGSC0003DMP400036654" /db_xref="TAIR:AT5G60710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H2Q5" /translation="MASTWRKLKKSLIPKISINHHHRRSSSSSSSANGIASSPSSSVS RSSSLLSYSFSFRSSKKICAICLGSLKKGEGQAIFTAECSHPFHFNCIATNVQHGNRI CPICRSEWRDIPFQAPSNAADSRHNNSTSRAQASPYNAPLEDTFVSGVSHNLLQSTLP QFEPDYFSDDEPIPAIHAGPASSTRPQTITIKALPEFPAVLASDAASKFAVLVGIRAP PFHVDVQKFDRAPIDLVAVLDVSGSMAGKLALLKRAVCFIIQNLGPSDRLSIVTFSSS ARRMLPLRRMSGGGHDEAIRVINALTSSGGTNIVEGLKKGVKVLEERREQNPIASIIL LSDGHDTLNGDTYRLYRSVQNHTLNPRHNLQYLYLLPPSICPRNNASGAESRQLTIPV HTFGFGSEHDSNAMHAISDVSGGTYSFIESIDILQDAFARCIGGLLSVVAQDVQLTMQ SISPGVQIGSIPSGRYKSEILSQGQKAIIYVGSLYADEEKEFLVYLSIPASTYADGEK KLGNMLLLDVLCSYTYSTTMEIFHLSCERVEIRRPEVLSPTDGLVCLEVDRQRNRLCV AEAIANAQRIAELGDLEHAQAVLSEQRIALLSSVSAQAGDRLCNWLEAELRETRQRMA NMELYEQTGRAYVLSGLSSHSWQRATTRGYTTTIIPGEGVNPGTSGTISYETPSMVNM VSRSQVLNYVSPQQPQRLSKSCSQVQRNK" gene 21926633..21935952 /locus_tag="TCM_029310" /note="dbxref CacaoGD:Thecc1EG029310" mRNA join(21926633..21927016,21927139..21927312, 21927465..21927564,21927878..21928411,21929142..21929868, 21929988..21930019,21930487..21930578,21931028..21931101, 21931274..21931496,21931687..21931780,21931930..21932084, 21932391..21932615,21933166..21933366,21933824..21933949, 21934027..21934088,21934462..21934579,21934863..21935147, 21935235..21935952) /locus_tag="TCM_029310" /product="Peroxisome biogenesis protein 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s17400.1" /inference="similar to AA sequence:ricco:29841.m002791" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc820t1" CDS join(21926816..21927016,21927139..21927312, 21927465..21927564,21927878..21928411,21929142..21929868, 21929988..21930019,21930487..21930578,21931028..21931101, 21931274..21931496,21931687..21931780,21931930..21932084, 21932391..21932615,21933166..21933366,21933824..21933949, 21934027..21934088,21934462..21934579,21934863..21935147, 21935235..21935273) /locus_tag="TCM_029310" /note="dbxref ricco:29841.m002791" /codon_start=1 /product="Peroxisome biogenesis protein 1" /protein_id="EOY27465.1" /db_xref="TAIR:AT5G08470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNP1" /translation="MEFEVRHVAGIEDCFVSLPLLLIQTLQSTRSSLLPPLLALELRL PRSSDHPWIVAWSGAASSSTAIEVSQQFAECISLPNHTTVQVRAASNMAKATLVTIEP HTEDDWEVLELNSEHAEAAILKQVRIVHEGMRFPLWLHGRTIVTFLVVSTFPKKAVVQ LVPGTEVAVAPKRREKNLKNMESSTRESHGAKALLRLQDSDRRLFHKSNVKGVELGVA LTSVAFIHQVTAKRFSLESLQLVVIVPRLSSKGSVKNLENDALRMKGSLTSKEANSGI STDNKEFRQVIVHLLISDSVAEGHVMITRSLRLYLRAGLHSCMLNLSKNQLLILLYLP RKGVYLKGYNVALKKEISVLSLSPCHFKVVANDKENGLEVLDGHKTRRMKNSGSGTSL EVVNWSTHDDVVAVLSSEFPFQEAEDSSQEDTKKGLECLLRAWFLAQLDAIASNAGTE VKTLVLGNENLLHFEVNRYDSGTYGLVSSNGFSEKRNKTKDLPVEISYILTISEELLH SGNVNAYELALDDRNKRNDVQGGFELFGKLNLGNPMSLYSVKDRTSVKGFSTNASSLS WMGVTASDVINSRCFKGLLKIVIGMMVLLAPASGIWFSTYNLPLPGHVLIYGPAGSGK TLLARAVAKSLEEHKDLLAHVIFICCSGLALEKPPTIRQALSSFVSEALDHAPSVVVF DDLDSIIQSSSDSEGSQPSTSVVALTKFLTDIIDEYGEKRKSSCGIGPIAFIASVQSL ESIPQSLSSSGRFDFHVQLPAPAASERGAILKHEIQRRSLQCHDDILLDVASKCDGYD AYDLEILVDRAVHAAIGRFLPSDSEEYVKPILVREDFSHAMHEFLPVAMRDITKSAPE VGRSGWDDVGGLNDIRDAIKEMIEMPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIV GAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKR GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDF PSRRERLDVLTVLSRKLPLASDVDLGAIACMTEGFSGADLQALLSDAQLAAVHEHLSS VSSNEPGKMPVLTDGVLKSIASKARPSVSETEKQRLYGIYSQFLDSKRSVAAQSRDAK GKRATLA" mobile_element complement(21930608..21930669) /note="source:CACAO_M_E52400_F7_scaffold_7 2186 2245" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21936074..21942914 /locus_tag="TCM_029311" /note="dbxref CacaoGD:Thecc1EG029311" mRNA join(21936074..21937256,21937780..21938055, 21938403..21938599,21938879..21939020,21939697..21939969, 21940083..21940155,21940333..21940381,21940723..21941011, 21941202..21941257,21941405..21941473,21941593..21941732, 21941996..21942223,21942565..21942587) /locus_tag="TCM_029311" /product="Transforming growth factor-beta receptor-associated protein 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013627001" /inference="similar to AA sequence:Phytozome:GSVIVT01013627001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc359t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc359t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9467t1" mRNA join(21936074..21937256,21937780..21938055, 21938403..21938599,21938879..21939020,21939697..21939969, 21940083..21940155,21940333..21940381,21940723..21941011, 21941202..21941257,21941420..21941473,21941593..21941732, 21941996..21942223,21942565..21942587) /locus_tag="TCM_029311" /product="Transforming growth factor-beta receptor-associated protein 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013627001" /inference="similar to AA sequence:Phytozome:GSVIVT01013627001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc359t9; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc359t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9467t1" mRNA join(21936143..21937256,21937780..21938055, 21938403..21938599,21938879..21939020,21939697..21939969, 21940083..21940155,21940333..21940381,21940723..21941011, 21941202..21941257,21941405..21941473,21941593..21941704, 21941897..21941986,21942053..21942223,21942565..21942914) /locus_tag="TCM_029311" /product="Transforming growth factor-beta receptor-associated protein 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013627001" /inference="similar to AA sequence:Phytozome:GSVIVT01013627001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9467t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9467t1" CDS join(21936162..21937256,21937780..21938055, 21938403..21938599,21938879..21939020,21939697..21939969, 21940083..21940155,21940333..21940381,21940723..21941011, 21941202..21941257,21941405..21941473,21941593..21941704, 21941897..21941986,21942053..21942223,21942565..21942657) /locus_tag="TCM_029311" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transforming growth factor-beta receptor-associated protein 1 isoform 1" /protein_id="EOY27466.1" /db_xref="Phytozome:GSVIVT01013627001" /db_xref="TAIR:AT1G22860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I312" /translation="MAKPKSRTAVEPLAHFDLPTPNLSIRSLSLSQSTLYLGTQNGYL LLLSLNPNPNPVPTPNPPPIEAVSPSSLSRNVSLLRTVPLSDSPVESIFVLAEIGVVL VLSDGFLFLTDSLLIQPVKKLGGLKGVAVIARRFRGTHSQSTDLTDNTSNLSKGQRIL DKFGGVRANGVKTSVLEQSREGSSVFALVIGRKLMLIELVLGSSFLNASFVILREIQC FDGVKSMVWLDDSVIVGTINGYSLFSCVTGQSGVIFSLPDLSRPPLLKLLWREWKVLL LVDNVGVVVDALGQPVGGSLVFRKGGPDSVGELSSYAVVVRDGKMELYHKKSGNCIQT VTFGVEGVGQCIVADEENRSGEVVAVATPTKVICYRKVPSEEQIKDLLRKKNFKEAIS LVEELECEGEMSKEMLSLFHAQVGFLLLFDLHFEEAVDHFLQSETMQPSEVFPFIMRD PNRWSLLVPRNRYWGLHPPPVPLEDVVDNGLLAIQRAIFLRKAGVETVVDKRFLSNPP TRAELLESAIKNMIRYLEVSHQKDLTLSVKEGVDTLLMYLYRALNCVDDMEKLASSEN CCIVEELETLLDGSGHLRTLAFLYASKGMSSKALAIWRILARNYSSGLWKDPAVENGV HDGSACVVSGRETAATEASKILEDSSDQDLVLQHLSWIADINPVLAVRVLTSEKRTNQ FSPDEVIAAIDPKKVEILQRYLQWLIEDQDCDDTRFHTFYAISLAKAAIETFDSDIRS QSHDTERQEQVKIIDTQRESIFQSPVRERLQIFLQSSDLYDPEEVLFLVETSELWLEK AILYRKLGQETLVLRILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLDPQDGKEPMF KAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQGQVVHYLSR AVHMDARLARLEERSRLVQINDESLCDSCHARLGTKLFAMYPDDTVVCYKCFRRQGDS TSVTGRDFKEDVLFKPGWLVSR" CDS join(21936162..21937256,21937780..21938055, 21938403..21938599,21938879..21939020,21939697..21939969, 21940083..21940155,21940333..21940381,21940723..21941011, 21941202..21941257,21941405..21941473,21941593..21941732, 21941996..21942024) /locus_tag="TCM_029311" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transforming growth factor-beta receptor-associated protein 1 isoform 2" /protein_id="EOY27467.1" /db_xref="Phytozome:GSVIVT01013627001" /db_xref="TAIR:AT1G22860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I312" /translation="MAKPKSRTAVEPLAHFDLPTPNLSIRSLSLSQSTLYLGTQNGYL LLLSLNPNPNPVPTPNPPPIEAVSPSSLSRNVSLLRTVPLSDSPVESIFVLAEIGVVL VLSDGFLFLTDSLLIQPVKKLGGLKGVAVIARRFRGTHSQSTDLTDNTSNLSKGQRIL DKFGGVRANGVKTSVLEQSREGSSVFALVIGRKLMLIELVLGSSFLNASFVILREIQC FDGVKSMVWLDDSVIVGTINGYSLFSCVTGQSGVIFSLPDLSRPPLLKLLWREWKVLL LVDNVGVVVDALGQPVGGSLVFRKGGPDSVGELSSYAVVVRDGKMELYHKKSGNCIQT VTFGVEGVGQCIVADEENRSGEVVAVATPTKVICYRKVPSEEQIKDLLRKKNFKEAIS LVEELECEGEMSKEMLSLFHAQVGFLLLFDLHFEEAVDHFLQSETMQPSEVFPFIMRD PNRWSLLVPRNRYWGLHPPPVPLEDVVDNGLLAIQRAIFLRKAGVETVVDKRFLSNPP TRAELLESAIKNMIRYLEVSHQKDLTLSVKEGVDTLLMYLYRALNCVDDMEKLASSEN CCIVEELETLLDGSGHLRTLAFLYASKGMSSKALAIWRILARNYSSGLWKDPAVENGV HDGSACVVSGRETAATEASKILEDSSDQDLVLQHLSWIADINPVLAVRVLTSEKRTNQ FSPDEVIAAIDPKKVEILQRYLQWLIEDQDCDDTRFHTFYAISLAKAAIETFDSDIRS QSHDTERQEQVKIIDTQRESIFQSPVRERLQIFLQSSDLYDPEEVLFLVETSELWLEK AILYRKLGQETLVLRILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLDPQDGKEPMF KAAVRLLHNHGESLDPLQVLEVKPLSLSPASFCLVLHII" CDS join(21936162..21937256,21937780..21938055, 21938403..21938599,21938879..21939020,21939697..21939969, 21940083..21940155,21940333..21940381,21940723..21941011, 21941202..21941257,21941420..21941473,21941593..21941732, 21941996..21942024) /locus_tag="TCM_029311" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Transforming growth factor-beta receptor-associated protein 1 isoform 3" /protein_id="EOY27468.1" /db_xref="Phytozome:GSVIVT01013627001" /db_xref="TAIR:AT1G22860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I312" /translation="MAKPKSRTAVEPLAHFDLPTPNLSIRSLSLSQSTLYLGTQNGYL LLLSLNPNPNPVPTPNPPPIEAVSPSSLSRNVSLLRTVPLSDSPVESIFVLAEIGVVL VLSDGFLFLTDSLLIQPVKKLGGLKGVAVIARRFRGTHSQSTDLTDNTSNLSKGQRIL DKFGGVRANGVKTSVLEQSREGSSVFALVIGRKLMLIELVLGSSFLNASFVILREIQC FDGVKSMVWLDDSVIVGTINGYSLFSCVTGQSGVIFSLPDLSRPPLLKLLWREWKVLL LVDNVGVVVDALGQPVGGSLVFRKGGPDSVGELSSYAVVVRDGKMELYHKKSGNCIQT VTFGVEGVGQCIVADEENRSGEVVAVATPTKVICYRKVPSEEQIKDLLRKKNFKEAIS LVEELECEGEMSKEMLSLFHAQVGFLLLFDLHFEEAVDHFLQSETMQPSEVFPFIMRD PNRWSLLVPRNRYWGLHPPPVPLEDVVDNGLLAIQRAIFLRKAGVETVVDKRFLSNPP TRAELLESAIKNMIRYLEVSHQKDLTLSVKEGVDTLLMYLYRALNCVDDMEKLASSEN CCIVEELETLLDGSGHLRTLAFLYASKGMSSKALAIWRILARNYSSGLWKDPAVENGV HDGSACVVSGRETAATEASKILEDSSDQDLVLQHLSWIADINPVLAVRVLTSEKRTNQ FSPDEVIAAIDPKKVEILQRYLQWLIEDQDCDDTRFHTFYAISLAKAAIETFDSDIRS QSHDTERQEQVKIIDTQRESIFQSPVRERLQIFLQSSDLYDPEEVLFLVETSELWLEK AILYRKLGQETLVLRILALEAAEQYCAEIGRPDAYMQLLDMYLDPQDGKEPMFKAAVR LLHNHGESLDPLQVLEVKPLSLSPASFCLVLHII" mobile_element 21944499..21945471 /note="source:CACAO_Again_on_S_E217_scaffold_6 1 973" /mobile_element_type="transposon:TIR/hAT" gene 21945675..21952789 /locus_tag="TCM_029312" /note="dbxref CacaoGD:Thecc1EG029312" mRNA join(21945675..21945782,21947478..21947804, 21948967..21949048,21949421..21949555,21950229..21950404, 21950489..21950640,21950967..21952789) /locus_tag="TCM_029312" /product="Cyclin family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14860.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14860.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc345t12; alternateUTRof:Thecc1EG029312t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc345t7" mRNA join(21945778..21945782,21945930..21946065, 21947478..21947804,21948967..21949048,21949421..21949555, 21950229..21950404,21950489..21950640,21950967..21952751) /locus_tag="TCM_029312" /product="Cyclin family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14860.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14860.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc345t7" CDS join(21947578..21947804,21948967..21949048, 21949421..21949555,21950229..21950404,21950489..21950640, 21950967..21951988) /locus_tag="TCM_029312" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cyclin family protein, putative isoform 1" /protein_id="EOY27469.1" /db_xref="Phytozome:POPTR_0003s14860.1" /db_xref="TAIR:AT5G45190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKE6" /translation="MAGMLPGDSSHHSTSESGPSRNSQEKQEEVGRWYFSRKEIEENS PSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDR RTIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAAQRIKQKEVYEQQKELILL GERLVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKP HHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPPSQ GSEVEGSAGGGTSHRAPAKHPSGSEDKQISSRSAADHSSADNHGVPSRTAQNQSNDNG SGEMGSVITDHKMDMETKDNQHPEQLPQKENLREVSNKSRSGMERTGGEDHERTGGRN EIAETGEWRDDGASRKASSVVGRNLDMREGPVGQSPKEAIKIDKDKLKAALEKRRKSR GETMKKKDVMDEDDLIERELEDGVELAVEDEKIKRERRQTWSRNENLDHGKDHGEMGE GNHFVTKGQSSRGFEAEAAEEGEMLDDASPMVNSRKRKGGSPPDRQLEGKKRHEYMSS YNHDSIEDGQKMGRSSYADKEHRRHAHENHL" CDS join(21947578..21947804,21948967..21949048, 21949421..21949555,21950229..21950404,21950489..21950640, 21950967..21951988) /locus_tag="TCM_029312" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cyclin family protein, putative isoform 1" /protein_id="EOY27470.1" /db_xref="Phytozome:POPTR_0003s14860.1" /db_xref="TAIR:AT5G45190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKE6" /translation="MAGMLPGDSSHHSTSESGPSRNSQEKQEEVGRWYFSRKEIEENS PSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDR RTIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAAQRIKQKEVYEQQKELILL GERLVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKP HHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPPSQ GSEVEGSAGGGTSHRAPAKHPSGSEDKQISSRSAADHSSADNHGVPSRTAQNQSNDNG SGEMGSVITDHKMDMETKDNQHPEQLPQKENLREVSNKSRSGMERTGGEDHERTGGRN EIAETGEWRDDGASRKASSVVGRNLDMREGPVGQSPKEAIKIDKDKLKAALEKRRKSR GETMKKKDVMDEDDLIERELEDGVELAVEDEKIKRERRQTWSRNENLDHGKDHGEMGE GNHFVTKGQSSRGFEAEAAEEGEMLDDASPMVNSRKRKGGSPPDRQLEGKKRHEYMSS YNHDSIEDGQKMGRSSYADKEHRRHAHENHL" gene 21953548..21954889 /locus_tag="TCM_029313" /note="dbxref CacaoGD:Thecc1EG029313" mRNA join(21953548..21954243,21954585..21954889) /locus_tag="TCM_029313" /product="Photosystem I subunit F" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11600.1" /inference="similar to AA sequence:ricco:30125.m001259" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9475t1" CDS 21953551..21954234 /locus_tag="TCM_029313" /note="dbxref ricco:30125.m001259" /codon_start=1 /product="Photosystem I subunit F" /protein_id="EOY27471.1" /db_xref="TAIR:AT1G31330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHE8" /translation="MSLTIPTNLSKPLLKPKLNSQVTPKVSRSLVVCSSTPSSDKSST SPSASPLQAFSAALALSSILLSAPQPAVADISGLTPCKESKQFAKREKQQIKKLESSL NLYAPDSAPALAIKATIEKTKRRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPG LLFLYIAGWIGWVGRSYLIAIRDDKKPAMKEIIIDVPLASSLLFRGFIWPVAAYRDLV NGDLIAKDV" gene complement(21958008..21960209) /locus_tag="TCM_029315" /note="dbxref CacaoGD:Thecc1EG029315" mRNA complement(join(21958008..21958036,21958276..21958449, 21959806..21960161)) /locus_tag="TCM_029315" /product="LOB domain-containing protein 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032557t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11610.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc291t1_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc291t1_C2" CDS complement(join(21958025..21958036,21958276..21958449, 21959806..21959982)) /locus_tag="TCM_029315" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG032557t1" /codon_start=1 /product="LOB domain-containing protein 4 isoform 2" /protein_id="EOY27473.1" /db_xref="Phytozome:POPTR_0001s11610.1" /db_xref="TAIR:AT1G31320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHE9" /translation="MKESGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPQKFAN VHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDAL QTQLALAQAEVVHLRRFE" mRNA complement(join(21958039..21958449,21959806..21960209)) /locus_tag="TCM_029315" /product="LOB domain-containing protein 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032557t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s11610.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc291t1_C2" CDS complement(join(21958111..21958449,21959806..21959982)) /locus_tag="TCM_029315" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG032557t1" /codon_start=1 /product="LOB domain-containing protein 4 isoform 1" /protein_id="EOY27472.1" /db_xref="Phytozome:POPTR_0001s11610.1" /db_xref="TAIR:AT1G31320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHE9" /translation="MKESGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPQKFAN VHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDAL QTQLALAQAEVVHLRVRQTASFSHHGFGPASPSNSGSPSSKLMGSQAKPMFDVDMVVD HASLGESMWSC" mobile_element complement(21971722..21971792) /note="source:scaffold_6_CACTA_0712 1321 1395" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21971752..21971831) /note="source:CACAO_M_E44848_F172_scaffold_6 1900 1952" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21972604..21976636) /locus_tag="TCM_029316" /note="dbxref CacaoGD:Thecc1EG029316" mRNA complement(join(21972604..21973038,21974499..21974682, 21976246..21976348,21976439..>21976605)) /locus_tag="TCM_029316" /product="Spc97 / Spc98 family of spindle pole body component, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14890.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019606001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11536t00001_C1; inference alignment:Newbler:10:TSA:cgbaL_g04879t00001" mRNA complement(join(21972609..21972759,21974499..21974682, 21976246..21976348,21976439..21976574)) /locus_tag="TCM_029316" /product="Spc97 / Spc98 family of spindle pole body (SBP) component, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14890.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019606001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc937t2; inference alignment:Newbler:10:TSA:cgbaL_g04879t00001" mRNA complement(join(21972732..21973052,21974499..21974682, 21976246..21976348,21976439..21976552)) /locus_tag="TCM_029316" /product="Spc97 / Spc98 family of spindle pole body component, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14890.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019606001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc954t1; inference alignment:Newbler:10:TSA:cgbaL_g04879t00001" CDS complement(join(21972738..21972759,21974499..21974682, 21976246..21976348,21976439..21976522)) /locus_tag="TCM_029316" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Spc97 / Spc98 family of spindle pole body (SBP) component, putative isoform 4" /protein_id="EOY27477.1" /db_xref="Phytozome:GSVIVT01019606001" /db_xref="TAIR:AT1G80245.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TVM0" /translation="MGEKEEEVLGNNSIEDVSWLCSLSESELDLLISLKMLAMKRARV IGHVQLAKNFDLKMLRALGFILMEYLKEKVKDSSIVSGVAESAAFIDSSNLLKSKLDD MMSIEELKEGIAIKTRKEFCKSRCSSII" mRNA complement(join(21972834..21973038,21974499..21974682, 21976246..21976348,21976439..21976636)) /locus_tag="TCM_029316" /product="Spc97 / Spc98 family of spindle pole body component, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14890.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019606001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaL_g04879t00001; inference alignment:Newbler:10:TSA:cgbaL_g04879t00001" CDS complement(join(21972954..21973038,21974499..21974682, 21976246..21976348,21976439..>21976603)) /locus_tag="TCM_029316" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Spc97 / Spc98 family of spindle pole body component, putative isoform 3" /protein_id="EOY27476.1" /db_xref="Phytozome:GSVIVT01019606001" /db_xref="TAIR:AT4G00695.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TVM0" /translation="NLCRTFPLYSCHCHSKHKKNKIFRSIYMGEKEEEVLGNNSIEDV SWLCSLSESELDLLISLKMLAMKRARVIGHVQLAKNFDLKMLRALGFILMEYLKEKVK DSSIVSGVAESAAFIDSSNLLKSKLDDMMSIEELKEGIAIKTRKEFCKRPREKDAANR SSKRPRSSSDLKEETESC" CDS complement(join(21972954..21973038,21974499..21974682, 21976246..21976348,21976439..21976522)) /locus_tag="TCM_029316" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Spc97 / Spc98 family of spindle pole body component, putative isoform 1" /protein_id="EOY27474.1" /db_xref="Phytozome:GSVIVT01019606001" /db_xref="TAIR:AT4G00695.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TVM0" /translation="MGEKEEEVLGNNSIEDVSWLCSLSESELDLLISLKMLAMKRARV IGHVQLAKNFDLKMLRALGFILMEYLKEKVKDSSIVSGVAESAAFIDSSNLLKSKLDD MMSIEELKEGIAIKTRKEFCKRPREKDAANRSSKRPRSSSDLKEETESC" CDS complement(join(21972977..21973052,21974499..21974682, 21976246..21976348,21976439..21976522)) /locus_tag="TCM_029316" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Spc97 / Spc98 family of spindle pole body component, putative isoform 2" /protein_id="EOY27475.1" /db_xref="Phytozome:GSVIVT01019606001" /db_xref="TAIR:AT1G80245.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TVM0" /translation="MGEKEEEVLGNNSIEDVSWLCSLSESELDLLISLKMLAMKRARV IGHVQLAKNFDLKMLRALGFILMEYLKEKVKDSSIVSGVAESAAFIDSSNLLKSKLDD MMSIEELKEGIAIKTRKEFCKRFLYKDHVRRMRQIEVVKDLDHHQI" gene 21973034..21974495 /locus_tag="TCM_029317" /note="dbxref CacaoGD:Thecc1EG029317" mRNA 21973034..21974495 /locus_tag="TCM_029317" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc924t3" CDS 21973375..21973662 /locus_tag="TCM_029317" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27478.1" /translation="MKAFSNKYFLVSGICQKTFIITVQCYYCKHITNSQTFSKSPITI LSTSRFTVYKFFKKKTVENLLLFTSPFPSSSQKKSYKKLLNLNSNFGCSKS" mobile_element 21978054..21978167 /note="source:CACAO_M_E57639_F345_scaffold_9 1407 1528" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21978106..21986704) /locus_tag="TCM_029318" /note="dbxref CacaoGD:Thecc1EG029318" mRNA complement(join(21978106..21979004,21979114..21979305, 21979386..21979484,21979727..21979852,21980011..21980220, 21980603..21980687,21980853..21980941,21981596..21981872, 21982101..21982211,21982320..21983812,21984080..21984969, 21986519..21986704)) /locus_tag="TCM_029318" /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029073t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s11630.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2481t2" CDS complement(join(21978342..21979004,21979114..21979305, 21979386..21979484,21979727..21979852,21980011..21980220, 21980603..21980687,21980853..21980941,21981596..21981872, 21982101..21982211,21982320..21983812,21984080..21984490)) /locus_tag="TCM_029318" /note="paralog of Thecc1EG029073t2" /codon_start=1 /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein, putative" /protein_id="EOY27479.1" /db_xref="Phytozome:POPTR_0001s11630.1" /db_xref="TAIR:AT1G72700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGG3" /translation="MAASSRRRKGKVRWSKLYTFACLRPSTSEPSSAQELIGQPGFSR VVFCNEPHLHKRKPFKYPHNYISTTKYNVLTFLPRALFEQFRRVANFYFLLAAVLSLL SLAPFSRASLIAPLVFVVGISMLKEAVEDWHRFLQDLDVNNRTVKAHASSGVFVDKLW KELRVGDVVKVNKDEYFPSDLLLISSSYEDGVCYVETMNLDGETNLKIKRCLEATLSL NEDEEFRNFKAIVRCEDPNPNLYTFVGNLEFENRSYPLCPSQVLLRDSKLRNTDYIYG VVIFSGHDTKAVRNSTRSPSKRSRMERIMDRIIYLLFSILLLLSLVSSIGSLLFLRHH MVDWWYLQLPDDNKVHDLDASNQKKDNDKFFNPSKPVKSASLQFIRALILYGYLIPIS LYVSIEVVKVLQAMLINKDIEMYDEATRKSVQARTSNLNEELGQVEMILSDKTGTLTC NQMEFRKCSIAGISYGGDVTEVDLAASKRMNVDFEASQLSIDESDRISQSYEEFEFSV SDFSAKKAVLGCREVLDNTNKGNSRLSEEESVIKGFNFRDDRLLNKNWIHGSNSSEIT MFFRVMALCHTGIPIEDDKIIKLRYEAESPEEVAFLVASQEFGFQFFRRTQSVMVLKE FDPSSRMEVEREYKLLNLLEFSSSRKRMSVIVSNEDGQIFLLCKGADSIIFDRLADNG RTYEQATTSHLSNYAEDGLRTLAFAYRTVEAAEYECWNTIFTQAKTTIGPEREELLEK ASEMIEKDLILLGVVAVEDKLQKGVPECIDKLAQAGLKVWLLTGDKRETAINIGFACS LLRQDMKQFHLSLSREAESNNQVKAMKIDILHQIESSYKVMCQERNKEAPFALIVDGK ALEVALRGDVKDQFLQLAVNCASVICCRVSPKQKALITRLVKEYTGRTTLAIGDGAND VGMIQEADIGVGISGMEGMQAVMASDFSLPQFRFLERLLIVHGHWCYQRIAKMVLYFV YKNVAFGLTLFYYELYTSFSGEVLYNDWYMTMFNVMLTSLPVIALGVLEQDVSSDVCL QFPALYQQGPRNVHFSWSRIIGWILNGVVTSLVIFLANIYILSPSAFRQNGYVADINS LGAITYTCIIWTVNCQIALITSHFTWIQHLSIWGSILLWYIFLILYGALPPYVSGNAF QVFIEDIGPAPLYWIVTLLVVIVSLLPYFAHIVIQRSFYPMDDHIIQEMKYCFKKDIV RNNQMWLREQRNSQRSTHIGFSARVDAKVLSFKEQLHQKNYQFTDDL" gene complement(21986793..21989584) /locus_tag="TCM_029319" /note="dbxref CacaoGD:Thecc1EG029319" mRNA complement(join(21986793..21987520,21987679..21987950, 21988330..21988480,21988562..21988672,21989051..21989166, 21989278..21989584)) /locus_tag="TCM_029319" /product="Galacturonosyltransferase-like 4, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013644001" /inference="similar to AA sequence:Phytozome:POPTR_0003s14910.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1732t2" CDS complement(join(21987277..21987520,21987679..21987950, 21988330..21988480,21988562..21988672,21989051..21989166, 21989278..21989568)) /locus_tag="TCM_029319" /codon_start=1 /product="Galacturonosyltransferase-like 4, putative" /protein_id="EOY27480.1" /db_xref="Phytozome:POPTR_0003s14910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GY52" /translation="MQKVGQKKSMSSSYMPWRSSATNRRQTQPTDNPRNPGPIFPDLG PAPSPKPIIRLLAFGLIIFLGLLQFLPASHFRHPSDPLRNWVPLNPHSSPSSTSKSEG SYEEDGMVHVVSWMECLDLKVLAVLANSTLSSSRYPDLVHFHFFTPEGNKDKVSFYKL KVLFPHSNLELHGQEEVKEIIRIATSEAEYARFNFEEIVPFIIPSVHQSLRKFIYASP DLILKGRVEELTGIDLSTHAIAAAAEDCSKRLNSYVNSDVLDAIQRSASKPWLSVTPY VKDACMPDLSLLVIDARKLQEFLEAVLWWSKVLNWSDRSSKRNPAIALALYNRYLKLS NSWLVKEPASLEITEKSMVIHYDGPKVVCSEFRNDTIPESSHGNLWMKYLPSMSNQIL VS" gene 21989739..21996869 /locus_tag="TCM_029320" /note="dbxref CacaoGD:Thecc1EG029320" mRNA join(21989739..21989909,21989994..21990065, 21990182..21990360,21990590..21990662,21990746..21990853, 21990959..21991073,21991237..21991925,21992023..21992154, 21992732..21992821,21992925..21993042,21993406..21993729, 21994338..21994402,21994671..21994845,21994958..21995062, 21995150..21995251,21995336..21995509,21995893..21996024, 21996104..21996869) /locus_tag="TCM_029320" /product="Nucleotide binding,nucleic acid binding,RNA binding" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s14940.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s14940.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9491t1" CDS join(21989821..21989909,21989994..21990065, 21990182..21990360,21990590..21990662,21990746..21990853, 21990959..21991073,21991237..21991925,21992023..21992154, 21992732..21992821,21992925..21993042,21993406..21993729, 21994338..21994402,21994671..21994845,21994958..21995062, 21995150..21995251,21995336..21995509,21995893..21996024, 21996104..21996277) /locus_tag="TCM_029320" /codon_start=1 /product="Nucleotide binding,nucleic acid binding,RNA binding" /protein_id="EOY27481.1" /db_xref="Phytozome:POPTR_0003s14940.1" /db_xref="TAIR:AT4G19610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HEY0" /translation="MTENDKNYYLYIIRRNGNITIILLLWFSSALDESLLNHVTLVGL VLARNSPSSKHSCPYLPSSSSPSTVDATFSRSSSFFSSNPNLADPQSGFHTSSTSFFQ PNLVELFPPSTGRLLETKNSLEKRSKQLNSFQNKNMSRICVKNLPKHVAEDRLREFFS QKGEITDTKLMRTKDGKSRQFAFIGYRTEQEAEEAIKYFNKSYLDTSRIICEIARKVG DPNTPRPWSRYSSKKQENVTETGKTTAGGKSLSVIDSKGGKKVLESSEKDDPQLQEFL QVMQPRVKSKMWANDIVIDTPANQKSKVTKKKAISEKESRQTSASVDAETDETNIALD DDDETKASDTVARDEVISDMDYFKSRVKKDWSDSESEENDDGDDSDQKGKHNSLSEDV IQDQIQQGSSKDADDEIIDPDNPSSVLKDDRDEVLQSGRLFVRNLPYTATEDELTEFF NKFGDVSQVHLVIDKDTKRSKGIAYVLYKVPECSVRALEELDKSSFQGRLLHVMAAKL KKPTGKQETDASQGSKTFKQKREEERKASEASGDTRGWNSLFMRPDTVVENIARKYGV SKSELLDREADDLAVRIALGETQVITETKKALANAGVNISSLEEVAAGKTDGMKRSNH ILLVKNLPYGSSDDELAKMFGKFGSLDKIILPPTKTLALVIFLEPAEARAAFKGLAYK RYKDAPLYLEWAPDNVLSKSSTSEGDKKNNAAVGEHDVKRAILEQLVEGISDADIDPD RIESRSLFVKNLNFKTSEESLRNHFTEHVKEGRIQSVRIKKHLKNGKQVSLGYGFIEL DSVETATNVCRDLQGTILDGHALILQLCHAKKEEQAVKNVEKDKSSTKLLVRNVAFEA TEKDLRQLFSPFGQIKSLRLPMKFGNHRGFGFVEFVTKQEAQNALQGLSSTHLYGRHL VIERAKEGESLEELRARTAAQFTDEQNGFQNPTRLSKKRKNMEFLDGDRKKFERIAD" gene complement(21997129..21999489) /locus_tag="TCM_029321" /note="dbxref CacaoGD:Thecc1EG029321" mRNA complement(join(21997129..21998268,21998572..21998882, 21999166..21999489)) /locus_tag="TCM_029321" /product="NAC domain containing protein 42, putative" /inference="alignment:exonerate-protein:2:frave:gene20078" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001955t1" /inference="similar to AA sequence:Phytozome:GSVIVT01020834001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1114t1" CDS complement(join(21997894..21998268,21998572..21998882, 21999166..21999361)) /locus_tag="TCM_029321" /note="paralog of Thecc1EG001955t1" /codon_start=1 /product="NAC domain containing protein 42, putative" /protein_id="EOY27482.1" /db_xref="Phytozome:GSVIVT01020834001" /db_xref="TAIR:AT2G43000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H638" /translation="MEVEKMISSGNNEDDEDVLLPGFRFHPTDQELVGFYLKRKVEKK LFSIDLIKHVDIYKYDPWDLPKVSKLSTVTEKELYFFCRRGRKYRNSIRPNRVTSSGF WKATGIDKPIYSVGEFHGCIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPVGQNPSLSN TKKDNLPEAEVWTLCRIFKRDVSYRKYALDWQSNKNPSKQNTTASGSRTCSIESDNSV EVKSFGVLDEKEIERKLANDHLLGRTQFFAGTTQVPSYLSFSNPNGGEFFGQQNWDEL RPVVDYTLGTSLLYSDW" gene 22002619..22006522 /locus_tag="TCM_029322" /note="dbxref CacaoGD:Thecc1EG029322" mRNA join(22002619..22003115,22003585..22003681, 22003773..22003836,22004082..22004130,22004234..22004302, 22004545..22004603,22004728..22004808,22005185..22005339, 22005437..22005521,22005941..22006084,22006181..22006522) /locus_tag="TCM_029322" /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s12410.1" /inference="similar to AA sequence:Phytozome:Glyma09g02500.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b028356t1a2; inference alignment:Newbler:10:TSA:cgbaL_g00359t00002" mRNA join(22002619..22003115,22003585..22003634, 22003773..22003836,22004082..22004130,22004234..22004302, 22004545..22004603,22004728..22004808,22005185..22005521, 22005941..22006084,22006181..22006522) /locus_tag="TCM_029322" /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s12410.1" /inference="similar to AA sequence:ricco:30186.m001315" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:PASA:2:TSA:puevd3b028356t1a3; inference alignment:Newbler:10:TSA:cgbaL_g00359t00002" mRNA join(22002619..22003115,22003585..22003634, 22003773..22003836,22004082..22004130,22004234..22004302, 22004545..22004603,22004728..22004808,22005185..22005339, 22005437..22005521,22005941..22006084,22006181..22006508) /locus_tag="TCM_029322" /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s12410.1" /inference="similar to AA sequence:frave:gene20076" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00359t00002" CDS join(22002844..22003115,22003585..22003634, 22003773..22003836,22004082..22004130,22004234..22004302, 22004545..22004603,22004728..22004808,22005185..22005339, 22005437..22005521,22005941..22006084,22006181..22006283) /locus_tag="TCM_029322" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene20076" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein, putative isoform 1" /protein_id="EOY27483.1" /db_xref="TAIR:AT5G45170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NMA9" /translation="METASCSILYTLRFSANTMTASMNNNKLYYETSLPKNRLCLLPS FPSAFPRNFNFRGKNRQLNGFAAFSSPSSAQNQNPSQELAVLLEVDGVLMDAYRLGNR QAFNLAFQKLGLDCANWTEPVYSDLLRRSADNEERMLMLYFNRIGWPTSLPTSEKEAF VKSVLREKKIALEELMLKSLPLRPGVENFIDDACNKGIPVIILASYSKSGDKIARSIV QRLGHERLSKIKVIGNEEVEKSLYGQLVFGKAMTSSLDEQLAKEARKAASAEKQRIAK EVASILKVSVDIDTSSSESLEKIVAALRAGAEIAGIPVYKCILIAGSKSGVAGAEQIG MPRVVLRSSFTSRAEFPSANAIMDGFGGADLTISKLCQKRWS" CDS join(22002844..22003115,22003585..22003634, 22003773..22003836,22004082..22004130,22004234..22004302, 22004545..22004603,22004728..22004808,22005185..22005446) /locus_tag="TCM_029322" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30186.m001315" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 3" /protein_id="EOY27485.1" /db_xref="TAIR:AT5G45170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NMA9" /translation="METASCSILYTLRFSANTMTASMNNNKLYYETSLPKNRLCLLPS FPSAFPRNFNFRGKNRQLNGFAAFSSPSSAQNQNPSQELAVLLEVDGVLMDAYRLGNR QAFNLAFQKLGLDCANWTEPVYSDLLRRSADNEERMLMLYFNRIGWPTSLPTSEKEAF VKSVLREKKIALEELMLKSLPLRPGVENFIDDACNKGIPVIILASYSKSGDKIARSIV QRLGHERLSKIKVIGNEEVEKSLYGQLVFGKAMTSSLDEQLAKEARKAGRISVFVFGK EMVCIFQFSRSLTNRFRSCFTSSFC" CDS join(22003657..22003681,22003773..22003836, 22004082..22004130,22004234..22004302,22004545..22004603, 22004728..22004808,22005185..22005339,22005437..22005521, 22005941..22006084,22006181..22006283) /locus_tag="TCM_029322" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein isoform 2" /protein_id="EOY27484.1" /db_xref="Phytozome:Glyma09g02500.1" /db_xref="TAIR:AT5G45170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NMA9" /translation="MSIAQKDLTFQKLGLDCANWTEPVYSDLLRRSADNEERMLMLYF NRIGWPTSLPTSEKEAFVKSVLREKKIALEELMLKSLPLRPGVENFIDDACNKGIPVI ILASYSKSGDKIARSIVQRLGHERLSKIKVIGNEEVEKSLYGQLVFGKAMTSSLDEQL AKEARKAASAEKQRIAKEVASILKVSVDIDTSSSESLEKIVAALRAGAEIAGIPVYKC ILIAGSKSGVAGAEQIGMPRVVLRSSFTSRAEFPSANAIMDGFGGADLTISKLCQKRW S" gene complement(22006522..22031004) /locus_tag="TCM_029323" /note="dbxref CacaoGD:Thecc1EG029323" mRNA complement(join(22006522..22006809,22006924..22006970, 22007204..22007517,22007901..22007997,22008332..22008426, 22008543..22008647,22008728..22008898,22008998..22009094, 22009184..22009476,22009561..22009685,22009819..22009984, 22010803..22010881,22011194..22011285,22011373..22011441, 22011527..22011685,22012040..22012096,22012203..22012265, 22012364..22012411,22012524..22012589,22012677..22012740, 22013702..22013772,22014255..22014357,22014467..22014533, 22015224..22015921,22030929..22031004)) /locus_tag="TCM_029323" /product="Root hair defective 3 GTP-binding protein (RHD3) isoform 1" /inference="alignment:exonerate- protein:2:ricco:30186.m001314" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029059t2" /inference="similar to AA sequence:ricco:30186.m001314" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9507t1" mRNA complement(join(22006874..22007517,22007901..22007997, 22008332..22008426,22008543..22008647,22008728..22008898, 22008998..22009094,22009184..22009446,22009561..22009685, 22009819..22009984,22010803..22010881,22011194..22011285, 22011373..22011441,22011527..22011685,22012040..22012096, 22012203..22012265,22012364..22012411,22012524..22012589, 22012677..22012740,22013702..22013772,22014255..22014357, 22014467..22014533,22015224..22015741)) /locus_tag="TCM_029323" /product="Root hair defective 3 GTP-binding protein (RHD3) isoform 2" /inference="alignment:exonerate- protein:2:ricco:30186.m001314" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029059t2" /inference="similar to AA sequence:ricco:30186.m001314" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9507t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9507t1" CDS complement(join(22007230..22007517,22007901..22007997, 22008332..22008426,22008543..22008647,22008728..22008898, 22008998..22009094,22009184..22009446,22009561..22009685, 22009819..22009984,22010803..22010881,22011194..22011285, 22011373..22011441,22011527..22011685,22012040..22012096, 22012203..22012265,22012364..22012411,22012524..22012589, 22012677..22012740,22013702..22013772,22014255..22014357, 22014467..22014533,22015224..22015377)) /locus_tag="TCM_029323" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30186.m001314; paralog of Thecc1EG029059t2" /codon_start=1 /product="Root hair defective 3 GTP-binding protein (RHD3) isoform 2" /protein_id="EOY27487.1" /db_xref="TAIR:AT5G45160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKE9" /translation="MAGVDHCYSTQLIDGDGEFNVVGLDNFMRNTKLSNCGLSYAVVA IMGPQSSGKSTLLNHLFHTNFREMDAYRGRTQTTKGIWIAHCVGIEPFTMAMDLEGTD GRERGEDDTTFEKQSALFALAVADIVLINMWCHDIGREHAANKPLLKTVFQVMMRLFS PRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWNAVRKPEAHKDTPLSEFFNVEVTAL SSYEEKEELFKEQVTELRQRFFNSISPGGLAGDRRGVVPASGFSFSAQRIWKVIKENK DLDLPAHKVMVATVRCEEIANEKLHCLSSDEDWLALEQAGQSGPVSGFGRKLSSILET YFSEYDMETIYFDEGVRNAKRKQLESKALDCVHPAYLNLLGNLRVKALENFKSRLEQM LNKGEGFAASAHTCIKSCMLEFDQGCADAAIRQADWDASKVRDKLRRDIDAHTSSVRN AKLSELMASYEKQLSQALSEPVESLFDAAGIDTWASIRKLLKRETETAASEFSTAISS FELDQPTNEKMLQDLSNYARNVVEKKAREEAGKVLIRMKDRFSTVFSHDNDSMPRVWT GKEDIRTITKDARTASLRLLSVMAAVRLDEKPDKIESILFSTLMDGSLAVASSQQRSI STSSDPLASSTWEEVSPNNTLITPVQCKSLWRQFKAETEYTVTQAISAQEAYKRTNNW LPPPWAIVAMVVLGFNEFMLLLRNPLYLMLLFVAYLLSKAMWVQMDVGGQFQHGTLAG LISISSRFLPTVVNLLRRLAEEAQGHQTAEAPRQQPSMAFQSFRNQSQLNPTSSIPES SVSSSVSASDGGIEYSSPNLTQRRSTKVQEAELS" CDS complement(join(22007230..22007517,22007901..22007997, 22008332..22008426,22008543..22008647,22008728..22008898, 22008998..22009094,22009184..22009476,22009561..22009685, 22009819..22009984,22010803..22010881,22011194..22011285, 22011373..22011441,22011527..22011685,22012040..22012096, 22012203..22012265,22012364..22012411,22012524..22012589, 22012677..22012740,22013702..22013772,22014255..22014357, 22014467..22014533,22015224..22015377)) /locus_tag="TCM_029323" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30186.m001314; paralog of Thecc1EG029059t2" /codon_start=1 /product="Root hair defective 3 GTP-binding protein (RHD3) isoform 1" /protein_id="EOY27486.1" /db_xref="TAIR:AT5G45160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKE9" /translation="MAGVDHCYSTQLIDGDGEFNVVGLDNFMRNTKLSNCGLSYAVVA IMGPQSSGKSTLLNHLFHTNFREMDAYRGRTQTTKGIWIAHCVGIEPFTMAMDLEGTD GRERGEDDTTFEKQSALFALAVADIVLINMWCHDIGREHAANKPLLKTVFQVMMRLFS PRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWNAVRKPEAHKDTPLSEFFNVEVTAL SSYEEKEELFKEQVTELRQRFFNSISPGGLAGDRRGVVPASGFSFSAQRIWKVIKENK DLDLPAHKVMVATVRCEEIANEKLHCLSSDEDWLALEQAGQSGPVSGFGRKLSSILET YFSEYDMETIYFDEGVRNAKRKQLESKALDCVHPAYLNLLGNLRVKALENFKSRLEQM LNKGEGFAASAHTCIKSCMLEFDQGCADAAIRQADWDASKVRDKLRRDIDAHTSSVRN AKLSELMASYEQNVDILLSTQKQLSQALSEPVESLFDAAGIDTWASIRKLLKRETETA ASEFSTAISSFELDQPTNEKMLQDLSNYARNVVEKKAREEAGKVLIRMKDRFSTVFSH DNDSMPRVWTGKEDIRTITKDARTASLRLLSVMAAVRLDEKPDKIESILFSTLMDGSL AVASSQQRSISTSSDPLASSTWEEVSPNNTLITPVQCKSLWRQFKAETEYTVTQAISA QEAYKRTNNWLPPPWAIVAMVVLGFNEFMLLLRNPLYLMLLFVAYLLSKAMWVQMDVG GQFQHGTLAGLISISSRFLPTVVNLLRRLAEEAQGHQTAEAPRQQPSMAFQSFRNQSQ LNPTSSIPESSVSSSVSASDGGIEYSSPNLTQRRSTKVQEAELS" mobile_element 22018263..22018386 /note="source:CACAO_hAT_E938_scaffold_2 1834 1956" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22018716..22018788) /note="source:CACAO_M_S_E118746_F144_scaffold_9 1 75" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22018854..22019130 /note="source:CACAO_M_S_E5860_F197_scaffold_2 11490 11767" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22019411..22019570 /note="source:CACAO_Again_on_S_E75_scaffold_2 933 1091" /mobile_element_type="transposon:TIR/hAT" mobile_element 22019632..22020830 /note="source:CACAO_M_E1841_F5_scaffold_1 23278 24292" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22020443..22021122) /note="source:CACAO_M_E227789_F230_scaffold_56 1592 2203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22020739..22020994) /note="source:scaffold_9_CACTA_0927 5280 5904" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22020995..22021452 /note="source:CACAO_M_E1841_F5_scaffold_1 24470 24926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22021421..22022359 /note="source:scaffold_5_CACTA_0614 3675 4617" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22028884..22029158 /note="source:scaffold_5_CACTA_0614 6138 6409" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22029160..22030045 /note="source:CACAO_M_E1841_F5_scaffold_1 24917 25802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22030489..22030546 /note="source:CACAO_M_E52694_F25_scaffold_8 4014 4072" /mobile_element_type="retrotransposon:LTR/Copia" gene 22031459..22033865 /locus_tag="TCM_029324" /note="dbxref CacaoGD:Thecc1EG029324" mRNA join(22031459..22031533,22032109..22032295, 22033077..22033176,22033603..22033865) /locus_tag="TCM_029324" /product="Signal recognition particle 19 kDa protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s04780.1" /inference="similar to AA sequence:Phytozome:Glyma02g07200.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g10711t00001" CDS join(22032119..22032295,22033077..22033176, 22033603..22033733) /locus_tag="TCM_029324" /codon_start=1 /product="Signal recognition particle 19 kDa protein" /protein_id="EOY27488.1" /db_xref="Phytozome:Glyma02g07200.1" /db_xref="TAIR:AT1G48160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I2D3" /translation="MNGEISNIKKWVVFYPVYINSKKTVAEGRRISLTKACENPTCAE IADCCSHLKLVNAIEIDKAYPRDFMQRGRVRVQLRKEDGTLYNPAISSRKQLMLHVAE LVPRHPGRTKKQEAPSTSSAGPSKSGKGGRKKR" gene 22038426..22041948 /locus_tag="TCM_029325" /note="dbxref CacaoGD:Thecc1EG029325" mRNA join(22038426..22038489,22039171..22039869, 22040283..22040625,22041319..22041948) /locus_tag="TCM_029325" /product="Homeodomain-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s11820.1" /inference="similar to AA sequence:ricco:29958.m000942" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9517t3" CDS join(22039179..22039869,22040283..22040625, 22041319..22041487) /locus_tag="TCM_029325" /note="dbxref ricco:29958.m000942" /codon_start=1 /product="Homeodomain-like superfamily protein, putative" /protein_id="EOY27489.1" /db_xref="TAIR:AT2G35640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA43" /translation="MHLVMADQGGNNIVMREYRKGNWTVNETMVLIEAKKMDDERRMK KSGDSEGRSKPTELRWKWVEDYCWRKGCLRSQNQCNDKWDNLMRDYKKVREYQRRTAE TAEGNNNNNEGSYWEMEKNARKEKNLPSNMLRQIYEHLEEVVEKKGIQRVVAAGESGP NPNIPYVMDRPMTSVQPSLPPLLQHQLPAAIPPAIALPLPALPPLPPPTAAPAPLVQP SPLPYAQPLPTVDSDTSEYSDSPAKRRRRSGGNGEGTSGTASANNSNEVGTAISKSAS IIAEAIQASEEREERRHRDLVSLHERRLKIEESRTEINKNGIDGLVAAINKLANSILT LASHNNQSAPKNVRETLQQLGSDQYFSGTGQRRPVNGSLNPEGCQWLTNLPKCHSGAI IGGSLVFS" gene 22043335..22046320 /locus_tag="TCM_029326" /note="dbxref CacaoGD:Thecc1EG029326" mRNA join(22043335..22043621,22044316..22044393, 22044490..22044657,22045387..22045435,22045570..22045647, 22045810..22045899,22045980..22046320) /locus_tag="TCM_029326" /product="Ras-related small GTP-binding family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s12470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037896t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s12470.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04806t00001; inference alignment:Newbler:10:TSA:cgbaB_g01467t00001" mRNA join(22043335..22043621,22044316..22044393, 22044490..22044657,22045387..22045435,22045570..22045643, 22045806..22045899,22045980..22046320) /locus_tag="TCM_029326" /product="RAB isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s12470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037896t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s11850.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01467t00001; inference alignment:Newbler:10:TSA:cgbaB_g01467t00001" CDS join(22043583..22043621,22044316..22044393, 22044490..22044657,22045387..22045435,22045570..22045647, 22045810..22045899,22045980..22046080) /locus_tag="TCM_029326" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037896t1" /codon_start=1 /product="Ras-related small GTP-binding family protein isoform 2" /protein_id="EOY27491.1" /db_xref="Phytozome:POPTR_0015s12470.1" /db_xref="TAIR:AT4G19640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P20339" /translation="MATSGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFVEFQESTIG AAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK KWVQELQAQGNPNMVMALAGNKADLLDARKVAAEATQTYAQENGLFFMETSAKTASNV NDIFYEIAKRLPRVQPAQNPAGMVLMDRPAERTASASCCS" CDS join(22043583..22043621,22044316..22044393, 22044490..22044657,22045387..22045435,22045570..22045643, 22045806..22045899,22045980..22046080) /locus_tag="TCM_029326" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037896t1" /codon_start=1 /product="RAB isoform 1" /protein_id="EOY27490.1" /db_xref="Phytozome:POPTR_0012s11850.1" /db_xref="TAIR:AT5G45130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P20339" /translation="MATSGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFVEFQESTIG AAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAK KWVQELQAQGNPNMVMALAGNKADLLDARKVAAEEAQTYAQENGLFFMETSAKTASNV NDIFYEIAKRLPRVQPAQNPAGMVLMDRPAERTASASCCS" gene complement(22046962..22057449) /locus_tag="TCM_029327" /note="dbxref CacaoGD:Thecc1EG029327" mRNA complement(join(22046962..22049158,22053218..22053314, 22053990..22054049,22054387..22054462,22054535..22054656, 22055156..22055230,22055687..22055825,22055911..22055999, 22056229..22056437,22056961..22057449)) /locus_tag="TCM_029327" /product="Aspartyl protease family protein" /inference="alignment:exonerate- protein:2:ricco:30125.m001249" /inference="similar to AA sequence:ricco:30125.m001249" /note="quality class is strong, express is medium, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11438t00001" CDS complement(join(22047801..22049158,22053218..22053314, 22053990..22054049,22054387..22054462,22054535..22054656, 22055156..22055230,22055687..22055825,22055911..22055999, 22056229..22056369)) /locus_tag="TCM_029327" /note="dbxref ricco:30125.m001249" /codon_start=1 /product="Aspartyl protease family protein" /protein_id="EOY27492.1" /db_xref="TAIR:AT5G45120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHE2" /translation="MTAVPKQRVMAIKSYHSQAQMLVKNYLLADPFIPYTSILGGILA CKVAYDLTQLISNFYIKTYPSLTKIQRVEWNNRGISTIHAIFVSALSLYFVFWSDLFS DQQLAGLVVFRSSPLSTFGLGVSVGYFLLDLGMILWLYPSLGGMEYVIHHSVSGIAVA YAMFTGEAQLYTYMVLISEVTTPEINMRWYLDTAGMKRSSAYLINGVVIFFAWLIARV LLFGYMFYHVYLHYDQVIQMHTIGYVLVFGVPSVLATMNLMWFGKIVKAGNRNPNSVV LGLKRSSTSFPIPKASKHSRKRLSEVSDMVEQLRAVRDGYLITLNIGTPAQVIQVYMD TGSDLTWVPCGNISFDCLDCDDYRNNKLMGTFSPSHSSSAVRDSCGSSFCIDIHSSDN SFDPCIEAGCSLSTLLKATCSRPCPSFAYTYGEGGLVTGALTRDNLRVHGSSPEITRD IPRFSFGCVGSTYREPIGIAGFGKGVLSVPSQLGFLQKGFSHCFLAFKYANNPNISSP LFMGDVAISSNDNLQFTPMLKSPMFPNYYYIGLEAITVGNISSAEVPLNLREFDSQGN GGMLIDSGTTYTHLPEPFYSQLLSMLQSVVTYPRATDVETRTGFDLCYRVPCPNNRFT NDPFPAITFHFLNNVSLVLPQANYFYAMSAPSNSTGVKCLLFQSMDDGNYGPAGVFGN FQQQNVKVVYDLEKERIGFQPMDCAAGAASQGLHKN" gene 22061305..22064148 /locus_tag="TCM_029329" /note="dbxref CacaoGD:Thecc1EG029329" mRNA 22061305..22064148 /locus_tag="TCM_029329" /product="Mitochondrial transcription termination factor family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene20071" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024876t2" /inference="similar to AA sequence:frave:gene20071" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1478t4" CDS 22061540..22063321 /locus_tag="TCM_029329" /note="dbxref frave:gene20071; paralog of Thecc1EG024876t2" /codon_start=1 /product="Mitochondrial transcription termination factor family protein, putative" /protein_id="EOY27493.1" /db_xref="TAIR:AT4G19650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HIU0" /translation="MFMGRIRRRICKLSKMITHLDKFVVLSPIVYEKSDVVHNLCSVS LRVRYFRSSRLVFRPKASLADSIRSSSSGFASRISRAAKTEAQVVLFDYLHSTRSFRF MDAEHISKNSHHFLQNLLSKIDPEKDVAKSLTKFLRFNPVNEFEPFFESLGLSPSEVS TLVPQRLMFLRDDSVMLDNFHVLCDYGIPRSKMGKMYKVAREIFGYDYGVLALKLQAY ENLGLSKPTVIKLVSCCPSLLVGGVDAEFAGALERLKVLGIKNDDIGGYLSGKGMYDW GRMLDMLNFLDRVGYNEEQLGNLFKTNPALLFEGSGKKVYVLFGRLIKLGLRMNEVHS LFMQNPHILSVKCTKNLFKALDFLFDIAMDTEDIAHIVSRHVELMGSCSLKGPKTVCR ELNVEKEELCLIIKEDPLKWFSLASKSKVLSSGQVASKDTSKYLEKTTFLLRLGYLEN SDEMLKALKQFRGRGDQLQERFDCLVCAGLDCNVVKNLIRHAPMVLNQSKDVIEKKID CLKNWLGYPLESVVAFPAYLCYDMERISRRFSMYVWLRERGAAKPMLSLSTVLACSDA RFVKYFVDVHPEGPAKWETLKKSLHSI" gene complement(22064898..22069635) /locus_tag="TCM_029330" /note="dbxref CacaoGD:Thecc1EG029330" mRNA complement(join(22064898..22065821,22066796..22066993, 22067771..22068524,22068937..22069635)) /locus_tag="TCM_029330" /product="NPR1-like protein 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g02430.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001936t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s15800.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01308t00001" CDS complement(join(22065559..22065821,22066796..22066993, 22067771..22068524,22068937..22069485)) /locus_tag="TCM_029330" /note="paralog of Thecc1EG001936t1" /codon_start=1 /product="NPR1-like protein 4" /protein_id="EOY27494.1" /db_xref="Phytozome:POPTR_0015s15800.1" /db_xref="TAIR:AT5G45110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L746" /translation="MAYLSEPSSSLSFSSSSHLSNGSITHNIPSFTVPETGASLEVIS LTKLSTSLEQLVNDNGPDFSDADIVVEDVPVGVHRCILAVRSKFFNELFKKGNGSCEK EGKPSYNMSELLPYGKIGLEAFRILLHYLYTGKLRPSPMEVSTCVDNVCAHDACRPAI NFAVELMYASSIFQIPELVSLFQRRLLNFVEKALVEDIITILVVAFHCQCSQLVSQCV DRVARSDLDSISIEKELPYEVAESIRLLRRKSPPDGEDNEVVVDPLREKRIRRIHKAL DSDDVELVKLLLTESDITLDDAAALHYAAAYCDPKVVSEVLGLRLADVNLRNSRGYTV LHIAAMRKEPSVIMSLLAKGASASELTVDGRSAVNICQRLTRPKDYHAKTEQGKETNK DRICIDVLEREMRRNPMAGDVSVTSHTLADDLHMRLLYLENRVAFARLLFPSEAKLAM DIAHAETTSEFAGLCASKGSNGNLRQVDLNETPIMQKKRLLARMEALMKTVEMGRRYF PHCSEVLDKFMEDDLPDLFYLEKGSSEEQKIKRSRFRELKDDVQKAFSKDKAEFNRTG LSSSSSSSSLKDGGPYKLRKL" gene 22074874..22083446 /locus_tag="TCM_029331" /note="dbxref CacaoGD:Thecc1EG029331" mRNA join(22074874..22074987,22077414..22078728, 22078843..22078990,22079088..22080046,22080135..22080282, 22080504..22080746,22081303..22081612,22081977..22082495, 22083057..22083446) /locus_tag="TCM_029331" /product="Transducin/WD40 repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s15790.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s15790.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc826t1_C2" CDS join(22077683..22078728,22078843..22078990, 22079088..22080046,22080135..22080282,22080504..22080746, 22081303..22081612,22081977..22082038) /locus_tag="TCM_029331" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein, putative" /protein_id="EOY27495.1" /db_xref="Phytozome:POPTR_0015s15790.1" /translation="MASSLQELLTEEGFERGKSLKNPREVRLRNKSRAPDESVALPIY ICHDRKSLEKSKDEAEKTVIRNGSSVFSSRRLSSSDRSKSKSLIKDGPSNRDEPPIDD VAIRAVISILGGYIGRYIKDESFREMIKEKCNSCLVRRKNGSDNGIFVNMELGIESID KLVEDRGNKKELRMKSLRNSIRLLSIVASLNSKKSRNGSTCGVPNSHLSACAQLYLSI VYKLEKTDRISARHLLQVFCDSAFLARTHLLPDLWEHFFLPHLLHLKVWYHKELEFLS NLEYGEKEKRMKALSELYNDQIDMGTVKFAMYYKEWLKIGAKAPAVPTVPLPTSPSYR SSDSYASHSSINKNLYRAVFGATTERQSMELDHRIRASMDICRLEEEENECTDDEYYN GCNYVHNKTKTRRRSSTRTPETESWTETRKSDHFRLFTCQTGPTECLVNGKSVVRNNS MKKEEKVHLPMSDLSKAIATICSSDSLSDCEIAIRVMTKAWLESHADPAVETALAKAP VIEGILEVLFASSDDEILELAISILAEFVARNEVNRQMMLNSDPQLEIFLRLLRNSSL FLKAAVLLYLLKPKAKQMISTEWVPLVLRVLELGEQLQTLFTVRCSPQVAAFYFLDQL LTGFNEDRNLENATQVVSLGGLSLLIRNFEIGGVLERNNAALIISCCIRADGSCRNYL ADKLNKASLIELIVANRNDSNGTVVALLAELLCLNRRTQITKFLNDLLNGWRGLNTTH ILLACLQRALPEERPLVAAILLQLDLLGDPLRCSVYREEAVEAIIEALDCEKCNEKIQ EQSARALMMLGGRFSCMGEATTENWLLQQAGFHEKLEDSFHSKEIVDDILHEEEEAIV HWQRKAAIALLNSGNKRFLASLSNSMVKGIPSLARASLLTVAWMSSFLHSVRDKDFQS MACSILVPQLLESSNYNQALEERVLASFSLQRLIKSSEYTSIISSLDETLVNPLSNP" gene 22083494..22094363 /locus_tag="TCM_029332" /note="dbxref CacaoGD:Thecc1EG029332" mRNA join(22083494..22084088,22088653..22089365, 22089454..22089580,22089693..22090014,22090293..22091412, 22091538..22091705,22092081..22092460,22092566..22092820, 22093636..22094363) /locus_tag="TCM_029332" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400037984.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038020t1" /inference="similar to AA sequence:Phytozome:Glyma07g34840.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; weak similarity to DNA/RNA polymerases superfamily protein" mobile_element complement(22083718..22088264) /note="source:CACAO_M_E4223_F185_scaffold_2 36 4605" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22088412..22093187 /note="source:CACAO_M_S_E84662_F269_scaffold_6 1 4776" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(22089029..22089365,22089454..22089580, 22089693..22090014,22090293..22091412,22091538..22091705, 22092081..22092460,22092566..22092820,22093636..22093698) /locus_tag="TCM_029332" /note="paralog of Thecc1EG038020t1; weak similarity to DNA/RNA polymerases superfamily protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27496.1" /db_xref="Phytozome:Glyma07g34840.1" /db_xref="TAIR:ATMG00810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5APY5" /translation="MRHVNPIITQMKQHSEEVAKQDKALSYIHSAVTDSIFTRIMAYK APKEAWDKLREEFHGSDKIRQIQVLNLLGEFEVLKIRKDETIKDYSDKVLKVANQLRL LGEVLSERKDLTELVNALQAYEQRRAMRHEDSVENALTARTRELRVNSSGPKRPNVKC RSCNQMGHVERVCKTKNAQTDEKAAGMEQEETEAEHLFMATSVDENRVNNIWLIDNGC SNHMTGDVRNFTFLDKSFRSKVEIGSGVYLKILGTGTVAVEHHQLISFDKMVEGIPVV TASDHLCATCQFGKQSRFSFPKSSDFRATEKLQLVHSDLGGPMQTISLSGSAYYMIFI DDFLRYCWIYFLKHKSEAYNKFIQFKALVENEAEKSLKILRTDNGKEYCSNEFKSHLA RCGIKHHLTVPYSPQQNGVCEHKNRTIIAMTGCLLYDKNLPNCFWAEAANVAVSLLNV LPTTANKTKSPHEMWFGVKPSVAYLRVFGCICYSKIPDARRIKLDRKSQVTIYLGYSE TSKGYRVYNVETKKVSITRDARFDEYLYWNWDSQQIEGSSNINVVSDAILGNENHEQD KDDEDFAVRGTRTLQDIYNRCNMAVVEPTTFSEASIDENWMKAMEVEIDMIKKNGTWV LFDRPSNQNIVVARHDTICLLTTLTARERRKIWHLDVKLAFLNGKLAEDIYIEQLEGF EEPGSSGKVLCTPFNIGSKLSKDDGAPKANGTVFRKLIGCLLYLIASRPDIMYATSVL SRYMQSPSEVHHTTAKRVLRYVKGTLNFGLKFSKNKSQELLGYCDSDWAGCLDDSKST SGFCFTLGSAVFTWNSKKQECTATKLLVDNQSAIAIARNPVQYGRTKHIRVKYHALRA AVKDGEIVLEYCNTEDQLADIFTKGLPKDKFEYLRSELGVFQVSLKESGRRGITIGTL TVDSRQPLL" gene complement(22094366..22099129) /locus_tag="TCM_029333" /note="dbxref CacaoGD:Thecc1EG029333" mRNA complement(join(22094366..22096335,22097336..22098484, 22098665..22099129)) /locus_tag="TCM_029333" /product="Argonaute protein group" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400036770" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029341t1" /inference="similar to AA sequence:Phytozome:GSVIVT01026268001" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1090t3" CDS complement(join(22094830..22096335,22097336..22098214)) /locus_tag="TCM_029333" /note="paralog of Thecc1EG029341t1" /codon_start=1 /product="Argonaute protein group" /protein_id="EOY27497.1" /db_xref="Phytozome:GSVIVT01026268001" /db_xref="TAIR:AT1G31280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA51" /translation="MASPKISERVLPLSSSSSPETKQILLPVKRPDNGGTHAIKKLNL HVNHFPVKFDPKKIIWRYDVDVKPKVAPGDGHPVKLSKSNLYLIRRQMSLDIQVPLEM TVYDGKKSIFSAVVLPTGNFTVQLSESSYLVTLKLGSELRLSQLNDYLSGKVFVAPRD ILQGINLVMKESMNCLSHGFHPKEFHRGDDLGHGIIVSREPKHSLKLTSQGLAFCLDY LVLPVRKSVPVIEYLGEQIDGFHIDKFGSFKDKIESDLTGLRVCTTHLDTNRTYLIAG LTSKDAQNISFPIGDQQAVFIKFLSEFLMRFTFGSGEVVQNFGMEVSMNMTKVAGRVL SPPELNVGAPAGRKMKIKVDNEKCHWNLVRKCVFEGKQIDRWAVLDFSSATPNQPFIQ KLTNRCNNLGIRMGEPLHYQMARMDNLNDKDLLHEMLEHIQYLSYEKGKGRLQFLLCV MSKQHPGYNFLKFISETKVGVMTQCCLSARANEAKDQYLANLALKINAKLGGLNVEII EPLLHFKGEGHVMFVGADVNHPGFKDSTSPSIAAVVASMSWPVPNRYAAKIRPQDPRS EKIQDFGEMCLELIDSYVTLNKVKPAKIMIFRDGVSETQFDMVLNEELVGVKGAFQAM NYFPTITVIVAQKRHHTRFFLETKEDGGSSGNVPPGTVVDSTVVGPSGFHFHLFSQYS SMGTSKSTQYQVLWDEHRFSSDHIQQLIHSMCFTFALCTKPVYLIPPVYYADLAAYRG RLYQDALDRKSQASSRRSSSSSSLPASPSQPSAAAFSKSSYRVHPDLQNSMFFI" gene 22098544..22101137 /locus_tag="TCM_029334" /note="dbxref CacaoGD:Thecc1EG029334" mRNA join(22098544..22098993,22100587..22100630, 22100743..22101137) /locus_tag="TCM_029334" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029339t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1090t1_C1" CDS join(22098775..22098993,22100587..22100630, 22100743..22100950) /locus_tag="TCM_029334" /note="paralog of Thecc1EG029339t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27498.1" /translation="MNMTLLDFTLDWTHRTSAQTLVRSSSLLLLRLLLMMMLTVSASA SSSSSGKTIPTTSPPKTTSLHCNKKQTKINTSLFAIFFSCTSSSLILCLDLEEGMEER EFKYLGFRSIKRRRFGQQEAVGQETNRVRFGEQDPRASSDELAEVGWPFGPLLT" mobile_element complement(22099283..22099418) /note="source:CACAO_on_E22_A_scaffold_2 4869 5013" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22099419..22100034) /note="source:scaffold_8_CACTA_0855 1771 2400" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22100493..22100767 /note="source:scaffold_9_CACTA_0946 1575 1857" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22100816..22102297 /note="source:INTACT473_F7_scaffold_3-int 7240 8809" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22102352..22103429 /note="source:scaffold_9_CACTA_0946 1 1059" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22105326..22105457 /note="source:INTACT38_F18_scaffold_9-int 4919 5023" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22105431..22108179 /note="source:INTACT228_F18_scaffold_4-int 37 2808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22108176..22108891 /note="source:CACAO_M_E85278_F18_scaffold_10 1504 2203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22108869..22109048) /note="source:CACAO_M_E44982_F19_scaffold_6 2686 2859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22109667..22111428 /note="source:CACAO_on_E205_scaffold_7 2149 3882" /mobile_element_type="transposon:TIR/Mutator" mobile_element 22110699..22111578 /note="source:INTACT554_F250_scaffold_7-int 818 1646" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22110803..22111590) /note="source:scaffold_2_CACTA_0252 1557 2309" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22111590..22111671) /note="source:INTACT473_F7_scaffold_3-int 7339 7428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22111695..22111873) /note="source:INTACT666_F293_scaffold_9-int 733 916" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22111752..22111917 /note="source:INTACT554_F250_scaffold_7-int 2221 2390" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22112192..22112387) /note="source:INTACT579_F10_scaffold_3-int 3319 3497" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22113155..22113465) /note="source:INTACT555_F251_scaffold_2-int 10405 10711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22113432..22113485) /note="source:CACAO_M_E44210_F112_scaffold_5 9982 10037" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22115292..22116250) /note="source:CACAO_M_E4223_F185_scaffold_2 3626 4605" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22116251..22116905) /note="source:INTACT687_F13_scaffold_3-int 1298 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22116903..22120472) /note="source:CACAO_M_E4223_F185_scaffold_2 61 3636" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22121471..22121836 /note="source:INTACT639F_F363_scaffold_5-int 4761 5134" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22121517..22122785) /note="source:INTACT473_F7_scaffold_3-int 7535 8809" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22122987..22149254) /locus_tag="TCM_029338" /note="dbxref CacaoGD:Thecc1EG029338" mRNA complement(join(22122987..22123339,22125133..22125607, 22125806..22126299,22127110..22127323,22149038..22149254)) /locus_tag="TCM_029338" /product="Argonaute family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029341t1" /inference="similar to AA sequence:frave:gene20067" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1050t3" mobile_element 22123144..22123310 /note="source:INTACT641_F282_scaffold_1-int 6387 6562" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(22123186..22123339,22125133..22125607, 22125806..22126299,22127110..22127264)) /locus_tag="TCM_029338" /note="dbxref frave:gene20067; paralog of Thecc1EG029341t1" /codon_start=1 /product="Argonaute family protein, putative" /protein_id="EOY27499.1" /db_xref="TAIR:AT1G31280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA51" /translation="MELCVLAEGQKYPKELLDRDASKKLKNISLALPEVREKTIYNMV RAKDGPCCGEVVQNFGMEVSMNMTKVPGRVLSPPELNVGAPGGRKMKIKVDNEKCHWN LIRKCVLEGKQIDRWAVLDFSSATPNQPFIQKLTNQCNNLGIRMGEPLHYQMARMDNL NDKDLLQEMLEHIQHLSYEKGKGRLQFLLCVMSKQHPGYNFLKFISETKVGVMTQCSV VASMSWPVPNRYAAKIRPQDPRSEKIRDFGEMCLELIDSYVTLNKVKPAKIMIFRDGV SETQFDMVLNEELVGVKGAFQAMNYFPTITVIVAQKRHRTRFFLETKEDGGSSGNVPP GTVIDSTVVYPSGFHFHLFSQYGSIGTSKSTQYQVLWDEHRSGERQLTALVGSDVGVK VRDLGRGKNVDFLERERKGSGGRERKWGQKMKA" mobile_element complement(22123495..22124118) /note="source:INTACT157_F155_scaffold_1-int 11298 11907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22123830..22124142 /note="source:INTACT61_F128_scaffold_2-int 2351 2668" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22129110..22129250) /note="source:CACAO_on_E22_A_scaffold_2 4869 5013" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22129251..22129866) /note="source:scaffold_8_CACTA_0855 1771 2400" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22130313..22130591 /note="source:scaffold_9_CACTA_0946 1564 1857" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22130640..22132133 /note="source:INTACT473_F7_scaffold_3-int 7240 8809" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22132188..22133265 /note="source:scaffold_9_CACTA_0946 1 1059" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22135163..22137957 /note="source:INTACT228_F18_scaffold_4-int 1 2808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22137954..22138654) /note="source:INTACT228_F18_scaffold_4-int 3257 3957" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22137995..22150749) /locus_tag="TCM_029341" /note="dbxref CacaoGD:Thecc1EG029341" mRNA complement(join(22137995..22138026,22146116..22147716, 22147862..22148015,22148824..22149973,22150387..22150749)) /locus_tag="TCM_029341" /product="Argonaute protein group" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029333t1" /inference="similar to AA sequence:frave:gene20067" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1050t3" mobile_element complement(22138633..22138811) /note="source:CACAO_M_E44982_F19_scaffold_6 2686 2858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22139425..22139992 /note="source:CACAO_M_E52694_F25_scaffold_8 2866 3431" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22139991..22141245 /note="source:CACAO_on_E205_scaffold_7 2658 3889" /mobile_element_type="transposon:TIR/Mutator" mobile_element 22141246..22141399 /note="source:CACAO_M_E49539_F76_scaffold_7 3619 4921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22141985..22142199) /note="source:INTACT579_F10_scaffold_3-int 3319 3524" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22142084..22142273 /note="source:CACAO_M_E52694_F25_scaffold_8 4936 5185" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(22146610..22147716,22147862..22148015, 22148824..22149973,22150387..22150690)) /locus_tag="TCM_029341" /note="dbxref frave:gene20067; paralog of Thecc1EG029333t1" /codon_start=1 /product="Argonaute protein group" /protein_id="EOY27500.1" /db_xref="TAIR:AT1G31280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA51" /translation="MERGGFRGRGRGYGVAGGRGRGRGRDGQRHHHQQPQEQQGRGSN QGRSRGPVSPIQGGVQQGHAHVVPSPGGRTSWGAGPSFAQVLSRETQISSSPANVVSG PVVPAMASLKISERVLPSSSSSSPQTKQILPVKRPDNGGTHAIKKLNLRANHFAVKFD PKKIIWHYDVDVKPKVAPGNGHPVKLSKSDLYLIRRQMSLDIQVPLEMTAYDGKKSIF SAVVLPTGNFTVQLSESSYLVTLKLVSELRLSQLNDYLSGKVLLAPRNILQGMDLVMK ESMNSFSHGFHPIEFHRGDDLGHGIIASREPKHSLKLTSQVAFCLDYLVLPVRKSVLV IEYLGEQIDGFHIDKFGSFKDKIESDLTGLRVCTTHLDTNRTYLIAGLTSKDAQNISF PIGDQQVRLVDYFKEKYKKDIVYKNIPCLELGKKNGSHCVPMELCVLAEGQKYPKELL DRDAAKKLKNISLALPEVREKTICNMVRARDGPCCGEVVQNFGMEVSMNMTKVAGRVL SPPELNVGAPAGRKMKIKVDNEKCHWNLMARMDYLNDKDFLQEMLEHIQRLSYERGKG RLQFLLCVMSKQHPGYNFLKFISETKVGVMTQCCLSAGANEAKDQYLANLALKINAKL GGLNVEIIEPLLHFKGEGHVMFVGADVNHPGFKNSTSPSIAAVVASMSWPVPNSYAAK IRPQDPRSEKIQDFGEMCLELIDSYVTLNKVKPAKIMIFRDGVSETQFDMVLNEELVG VKGAFQAMNYFPTITVIVAQKRHHTRFFLETKEDGGSSGNVPPGTVIDSTVVDPSGFH FHLFSQYGSIGTSKSTQYQVLWDEHRFSSDHIQQLIHSMCFTFARCTKPVSXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXIEKIIFIFISSSITITTISSCI" gene 22150815..22160685 /locus_tag="TCM_029343" /note="dbxref CacaoGD:Thecc1EG029343" mRNA join(22150815..22151045,22157594..22157778, 22159537..22160685) /locus_tag="TCM_029343" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(22150995..22151045,22157594..22157778, 22159537..22159801) /locus_tag="TCM_029343" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27501.1" /translation="MKGCFSPFAAHRRIGGLGKKSKCIEGERYSSVKKTQTKRGKRIY ERKKEGKKIKSVILFVREKKRKKKPNMHLSPPYLRYRDYFSRSRDFNVFPSSNSEPSS MYRDYFSWSRELHPILPISSGKCSMYRDLSLGSRNLMSPWPISRTLWPMYQDSFALVS RHVPNF" mobile_element complement(22151043..22151218) /note="source:CACAO_on_E22_A_scaffold_2 4830 5013" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 22152212..22152505 /note="source:scaffold_9_CACTA_0946 1574 1868" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22155442..22157302 /note="source:scaffold_9_CACTA_0946 1 1866" /mobile_element_type="transposon:TIR/CACTA" gene complement(22160688..22165886) /locus_tag="TCM_029345" /note="dbxref CacaoGD:Thecc1EG029345" mRNA complement(join(22160688..22162874,22163613..22164783, 22165045..22165886)) /locus_tag="TCM_029345" /product="Argonaute protein group, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400036770.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029341t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s11920.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5687t2" mRNA complement(join(22161065..22162874,22163613..22164014, 22164129..22164783,22165045..22165588)) /locus_tag="TCM_029345" /product="Argonaute protein group, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400036770.2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s11920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029341t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s11920.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5687t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5687t2" CDS complement(join(22161422..22162874,22163613..22164014, 22164129..22164783,22165045..22165471)) /locus_tag="TCM_029345" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029341t1" /codon_start=1 /product="Argonaute protein group, putative isoform 2" /protein_id="EOY27503.1" /db_xref="Phytozome:POPTR_0012s11920.1" /db_xref="TAIR:AT1G31280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA51" /translation="MERGRGYRGRGTGGRGGYRGGGRGRGRDGGGGGHQPPYHTVLEQ GGVHWNPTTTQGGPNQGTGQGLTRGGYTGGPGGSGGRGAWVPRPQLERPSSSHVMESA GRGHSGGGPWRSPWGRGAAPPARPQIHEPALPSRPVQPVPDSAAPEHLPSTSSPPENR NRYVPIMRPDKGGGVAVATVRLDVNHFRVNFNPERVIRHYDVDVRPQESPRHGRPVKL SKMLLPMIRKKLFTDNDSELPLTMTAYDGEKNIFSAVQLPEGQFEVDLSEGEDMKSRK FIVSLKLVNELKLRKLKDYLTMGNISIPRDILQGMDVVMKENPVMRMIYTGRSFHPTE SCPEDDLGRGIIASRGIQHSLKPTFQGRMVENVLRKLEVNVTHRRTKQKYAIVGLTSY KTRDITFPDANAPQRRIRLVDYFLEKYNKNITHLDIPCLDLSKHNRINYVPMEFCVLA EGQVYPKEDLDRHAALLLKDISLAKPQERRSKICCMVRSEDGPCGGNIIQNFGIEVNT EMTSVLGRVIGPPVLKLAAPNTGKLMKITVDKDKCQWNLVGKAVVEGKAIERWAVIDF SVADKFRLNYGSFISKLRARCTSLGMRMEEPLLHEATGMQTFSNDNELRQLLEKVTSQ AHKLGRGSLQFLLCVMSRKDDGYKYLKWISETKIGVVTQCCLSIEANKGKDQYLANLA LKINAKLGGSNVELNDRLPHFQGEDHVMFVGADVNHPGSHNRTSPSIAAVVATVNWPE ANRYAARVRPQHHRKEQILQFGEMCVELVESYERVNKVKPEKIVLFRDGVSEGQFDMV LNEELVDLKSAFQKMKYFPTITLIVAQKRHQTRFFPQRDRGPTGNISPGTVVDTDIVH RFEFDFYLCSHYGSLGTSKPTHYHVLWDEHGFSSDQLQKLIYNMCFTFARCTKPVSLV PPVYYADLVAYRGRLYHQAMMERHSPISTLPSSSSLASLSLSSAASFDGSFRLHADLE NIMFFV" CDS complement(join(22161422..22162874,22163613..22164783, 22165045..22165471)) /locus_tag="TCM_029345" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029341t1" /codon_start=1 /product="Argonaute protein group, putative isoform 1" /protein_id="EOY27502.1" /db_xref="Phytozome:POPTR_0012s11920.1" /db_xref="TAIR:AT1G31280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA51" /translation="MERGRGYRGRGTGGRGGYRGGGRGRGRDGGGGGHQPPYHTVLEQ GGVHWNPTTTQGGPNQGTGQGLTRGGYTGGPGGSGGRGAWVPRPQLERPSSSHVMESA GRGHSGGGPWRSPWGRGAAPPARPQIHEPALPSRPVQPVPDSAAPEHLPSTSSPPENR NRYVPIMRPDKGGGVAVATVRLDVNHFRVNFNPERVIRHYDVDVRPQESPRHGRPVKL SKMLLPMIRKKLFTDNDSELPLTMTAYDGEKNIFSAVQLPEGQFEVDLSEGEDMKSRK FIVSLKLVNELKLRKLKDYLTMGNISIPRDILQGMDVVMKENPVMRMIYTGRSFHPTE SCPEDDLGRGIIASRGIQHSLKPTFQGLALCLDYSVLALHKKMPVIEFLVEHFPGFNV NAFGRYRRMVENVLRKLEVNVTHRRTKQKYAIVGLTSYKTRDITFPDANAPQRRIRLV DYFLEKYNKNITHLDIPCLDLSKHNRINYVPMEFCVLAEGQVYPKEDLDRHAALLLKD ISLAKPQERRSKICCMVRSEDGPCGGNIIQNFGIEVNTEMTSVLGRVIGPPVLKLAAP NTGKLMKITVDKDKCQWNLVGKAVVEGKAIERWAVIDFSVADKFRLNYGSFISKLRAR CTSLGMRMEEPLLHEATGMQTFSNDNELRQLLEKVTSQAHKLGRGSLQFLLCVMSRKD DGYKYLKWISETKIGVVTQCCLSIEANKGKDQYLANLALKINAKLGGSNVELNDRLPH FQGEDHVMFVGADVNHPGSHNRTSPSIAAVVATVNWPEANRYAARVRPQHHRKEQILQ FGEMCVELVESYERVNKVKPEKIVLFRDGVSEGQFDMVLNEELVDLKSAFQKMKYFPT ITLIVAQKRHQTRFFPQRDRGPTGNISPGTVVDTDIVHRFEFDFYLCSHYGSLGTSKP THYHVLWDEHGFSSDQLQKLIYNMCFTFARCTKPVSLVPPVYYADLVAYRGRLYHQAM MERHSPISTLPSSSSLASLSLSSAASFDGSFRLHADLENIMFFV" gene 22168935..22170472 /locus_tag="TCM_029346" /note="dbxref CacaoGD:Thecc1EG029346" mRNA join(22168935..22169590,22169799..22170472) /locus_tag="TCM_029346" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene12780" /inference="similar to AA sequence:Phytozome:Sb01g048580.1" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5617t1" CDS join(22169065..22169590,22169799..22170253) /locus_tag="TCM_029346" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27504.1" /db_xref="Phytozome:Sb01g048580.1" /translation="MYLDMPSISGASKRQIFSYVKDRVMKRVFNWENKLLSVAGREKM IKSVAQAVPTYAMSCFKLQDSICKEIDSGIAHFWWGGNDRDQKIHWKSWRSTCASKHY GGMGFRDTRSYNLAMLAKQEWRLQLKEPTLAYKVLKARYFPKGEFMELMFVTVEDWFR EIQNRVTKDELEDVVVFKTDGAQQLGVGFIVRGPTGEMRLAGVKRLRSGLCADEAELL ALTWSVQCCIEENIELDEVEIDNQTVVGWVNHKKYSGALGNIVEDCVMALEEISCGPL EYCPRECNASAHIIAQVAKGLDAEQLFWKDTMEMPDQVKYVIWRDTNMPS" gene complement(22170569..22171436) /locus_tag="TCM_029347" /note="dbxref CacaoGD:Thecc1EG029347" mRNA complement(join(22170569..22170994,22171091..22171436)) /locus_tag="TCM_029347" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.82 coverage" CDS complement(join(22170834..22170994,22171091..22171154)) /locus_tag="TCM_029347" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27505.1" /translation="MKSADPGLTKKAKPNQARSRVSWGSDHNLEVLVCNSLAAKTLGF GDFKEEFCLCWTLIETSRMYRLPFQSKNEK" gene complement(22171903..22177170) /locus_tag="TCM_029348" /note="dbxref CacaoGD:Thecc1EG029348" mRNA complement(join(22171903..22173316,22173407..22173849, 22174166..22174243,22174948..22175097,22175342..22175827, 22176021..22176536,22177079..22177170)) /locus_tag="TCM_029348" /product="Ankyrin repeat-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g06080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001417t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s15000.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc2666t1" mRNA complement(join(22172631..22173316,22173407..22173849, 22173929..22173976,22174166..22174243,22174948..22175097, 22175342..22175838,22176062..22176458)) /locus_tag="TCM_029348" /product="Ankyrin repeat-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g06080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001417t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s15000.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc2666t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc2666t1" CDS complement(join(22172726..22173316,22173407..22173849, 22173929..22173976,22174166..22174243,22174948..22175097, 22175342..22175838,22176062..22176402)) /locus_tag="TCM_029348" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG001417t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative isoform 2" /protein_id="EOY27507.1" /db_xref="Phytozome:POPTR_0015s15000.1" /db_xref="TAIR:AT3G54070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICR0" /translation="MLGRNPSIRACFPERFSDSNFDDSGQNSRRSYATSSATATPSES QPNSSRAALKPLKLVNNASKLPLPLPEHASARLVSQQTNATNHHHNNKDANAATPVQV VDKFIPAPSLATLMAANVNGNSTRLTLYAPLYQAALKGDWGKAKEFLNMHPGAANVRI TKGWETALHIAAGARHIAFVEELVKLTGVADLERRNKYNNTALCVAAASGITRIAEVM VKKNKCLPRIRGNKGVTPLYIAALFGHRDMVWYLYKVTAAEDLTQEDYIGLLIATITT DLFDVALCLIQHHPELATLRDSNGETALHVLARKPSAFASRSELGTWEKFIYPWIYVE PLVKSSCPSGMSKCCCDHTNQVFIGLAGKLRHSIEKTIPGHKAIYKKKLLHMQAIVLV ELLWGQILSLEDSQITDILRSPSQVLFIAAEFGVVELITELIQSYPDLIWRVDEHSRS IFHMAVIHRQEKIFRLIHDIGALKDMIAAYKDKNNHCILHLAGKIAPPNRLNIVSGAA LQMQRELLWFKEVEKNVQPLYKEMRDINGRTPRMLFTEEHAKLVKEGEKWMKSTASSC MLVATLITTVMFAAIFTVPGGNDNEKGTPLFLEAKSFIIFAISDALALFSSVTSILMF LSILTSRYAEEDFLRLLPQRLIVGLATLFLSIAAMLVAFGATFCIVLSQRLAWIAVPA ALIACIPVTLFAFLQFPLLVDMIQSSNGAGIFS" CDS complement(join(22172726..22173316,22173407..22173849, 22174166..22174243,22174948..22175097,22175342..22175827, 22176021..22176402)) /locus_tag="TCM_029348" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG001417t1" /codon_start=1 /product="Ankyrin repeat-containing protein, putative isoform 1" /protein_id="EOY27506.1" /db_xref="Phytozome:POPTR_0015s15000.1" /db_xref="TAIR:AT3G18670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICR0" /translation="MLGRNPSIRACFPERFSDSNFDDSGQNSRRSYATSSATATPSES QPNSSRAALKPLKLVNNASKLPLPLPEHASARLVSQQTNATNHHHNNKDANAATPVQV VDKFIPAPSLATPPASTLPSSVPTIANVNGNSTRLTLYAPLYQAALKGDWGKAKEFLN MHPGAANVRITKGWETALHIAAGARHIAFVEELVKLTGVADLERRNKYNNTALCVAAA SGITRIAEVMVKKNKCLPRIRGNKGVTPLYIAALFGHRDMVWYLYKVTAAEDLTQEDY IGLLIATITTDLFDVALCLIQHHPELATLRDSNGETALHVLARKPSAFASRSELGTWE KFIYPWIYVEPLVKSSCPSGMSKCCCDHTNQVPGHKAIYKKKLLHMQAIVLVELLWGQ ILSLEDSQITDILRSPSQVLFIAAEFGVVELITELIQSYPDLIWRVDEHSRSIFHMAV IHRQEKIFRLIHDIGALKDMIAAYKDKNNHCILHLAGKIAPPNRLNIVSGAALQMQRE LLWFKEVEKNVQPLYKEMRDINGRTPRMLFTEEHAKLVKEGEKWMKSTASSCMLVATL ITTVMFAAIFTVPGGNDNEKGTPLFLEAKSFIIFAISDALALFSSVTSILMFLSILTS RYAEEDFLRLLPQRLIVGLATLFLSIAAMLVAFGATFCIVLSQRLAWIAVPAALIACI PVTLFAFLQFPLLVDMIQSSNGAGIFS" gene 22177517..22178159 /locus_tag="TCM_029349" /note="dbxref CacaoGD:Thecc1EG029349" mRNA 22177517..22178159 /locus_tag="TCM_029349" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19100.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035641t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19100.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g17451t00001" CDS 22177637..22178038 /locus_tag="TCM_029349" /note="paralog of Thecc1EG035641t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27508.1" /db_xref="Phytozome:POPTR_0003s19100.1" /db_xref="TAIR:AT1G76750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SE79" /translation="MASTFRVFFLAFLLTLSLLFVAKARPSDPKPTSSLEARLNLDDG SANCWESLVQLQSCTGELIMFFLDGETNLGRSCCQAIRTISHRCWPTVIDALGFTTEE THVLEGYCDHEESPPSVVGPNGIVSTKPIGP" gene 22178381..22180802 /locus_tag="TCM_029350" /note="dbxref CacaoGD:Thecc1EG029350" mRNA join(22178381..22178560,22179524..22179718, 22180354..22180425,22180519..22180792) /locus_tag="TCM_029350" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026761001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5634t3" CDS join(22178522..22178560,22179524..22179718, 22180354..22180425,22180519..22180740) /locus_tag="TCM_029350" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27509.1" /translation="MDFFEMLGSSTKLAYDNCLSLWQKTESEDINNMMVDIYQEAGPT LLEEPESSIVFMDLHRQDEDHIKRLKEFQAYYDMVKRMVKPGCSQEVLKVALNSMSSL KKNLPGCPSDEIACCRFACLYLCIKPSVLLLYSHIVVQINVHLNLLKKQDMGMFYSVT CQHTTLCIASCHTCS" mRNA join(22179554..22179718,22180354..22180425, 22180519..22180802) /locus_tag="TCM_029350" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026761001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc664t8_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5634t3; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc676t8" CDS join(22179581..22179718,22180354..22180425, 22180519..22180740) /locus_tag="TCM_029350" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY27510.1" /translation="MMVDIYQEAGPTLLEEPESSIVFMDLHRQDEDHIKRLKEFQAYY DMVKRMVKPGCSQEVLKVALNSMSSLKKNLPGCPSDEIACCRFACLYLCIKPSVLLLY SHIVVQINVHLNLLKKQDMGMFYSVTCQHTTLCIASCHTCS" gene 22183612..22186867 /locus_tag="TCM_029351" /note="dbxref CacaoGD:Thecc1EG029351" mRNA join(22183612..22184142,22184246..22184310, 22184631..22186126) /locus_tag="TCM_029351" /product="GDP-fucose protein O-fucosyltransferase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s15770.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s15770.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc849t2" mRNA join(22184281..22184310,22184525..22186867) /locus_tag="TCM_029351" /product="GDP-fucose protein O-fucosyltransferase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s15770.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s15770.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc837t2; alternateUTRof:Thecc1EG029351t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc849t2" CDS 22184760..22186100 /locus_tag="TCM_029351" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="GDP-fucose protein O-fucosyltransferase 1 isoform 1" /protein_id="EOY27511.1" /db_xref="Phytozome:POPTR_0015s15770.1" /db_xref="TAIR:AT3G05320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA52" /translation="MDLSSNCKPSRLFGCHLTSVTCKCLALVTIALFFRVILLHSFSA NSAIEWNNLDFILSRSLLLNSDGGIRGDKFLEAPQIVWGLNNQKIAFARACLTARMLN RTLLMPSLSASLFYKEIDRLQPISFDKVFQFDRFNSLCNGFVRLGRYSDLKNQSGIYD LQKGSGRKWTVERDLEQLKRSSGGSADKYEVIRIVGKNPFLWHDHWPVKDYARVFECL ALVDEIAKEADKVVSKIRQVGRKLRSKTEPVENKFDAEGSSLPPAPYVAVHMRVEIDW MIHCKKLELRSGISQICSSKQEIMERVGKIVSFESPTVVYLAVADSLLNDSSILGHWK KGLLPFEKKKLGVDGIYKKHPYLIQSAIDYEVCSRADIFVGNSFSTFSSLVVLERTQK MIRMGTTSSCGIDVRWPSYAYNIPDESNGPQKWMTNMSDTSLKAISYGSNVISC" CDS 22184760..22186100 /locus_tag="TCM_029351" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="GDP-fucose protein O-fucosyltransferase 1 isoform 1" /protein_id="EOY27512.1" /db_xref="Phytozome:POPTR_0015s15770.1" /db_xref="TAIR:AT3G05320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA52" /translation="MDLSSNCKPSRLFGCHLTSVTCKCLALVTIALFFRVILLHSFSA NSAIEWNNLDFILSRSLLLNSDGGIRGDKFLEAPQIVWGLNNQKIAFARACLTARMLN RTLLMPSLSASLFYKEIDRLQPISFDKVFQFDRFNSLCNGFVRLGRYSDLKNQSGIYD LQKGSGRKWTVERDLEQLKRSSGGSADKYEVIRIVGKNPFLWHDHWPVKDYARVFECL ALVDEIAKEADKVVSKIRQVGRKLRSKTEPVENKFDAEGSSLPPAPYVAVHMRVEIDW MIHCKKLELRSGISQICSSKQEIMERVGKIVSFESPTVVYLAVADSLLNDSSILGHWK KGLLPFEKKKLGVDGIYKKHPYLIQSAIDYEVCSRADIFVGNSFSTFSSLVVLERTQK MIRMGTTSSCGIDVRWPSYAYNIPDESNGPQKWMTNMSDTSLKAISYGSNVISC" gene complement(22188102..22192313) /locus_tag="TCM_029352" /note="dbxref CacaoGD:Thecc1EG029352" mRNA complement(join(22188102..22189042,22189654..22190414, 22191046..22191544,22192040..22192256)) /locus_tag="TCM_029352" /product="RING/U-box superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s15760.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s15760.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16341t1" CDS complement(join(22188661..22189042,22189654..22190414, 22191046..22191465)) /locus_tag="TCM_029352" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RING/U-box superfamily protein isoform 1" /protein_id="EOY27513.1" /db_xref="Phytozome:POPTR_0015s15760.1" /db_xref="TAIR:AT4G19670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICJ9" /translation="MEDQKVLPDESSVSLVREVRAEEDEEDFRSCCEDDEVWKETEEV VKEEEREELDEFSVNMFFKGISLADTGDSGSGFSGIGVVMERSADSPVIQVQKKLDFY VEESVADYLAIMDGLTEAVQNKIHRVYAFTDSASLYDQITSEEKLDNPLLMALRERIL EHTRSLEEFVLKLVPSTNLLRPLQLAQVAIGVISCSVKGDKSLENCSICCEDKLSLMM ITMKCSHKFCSHCMRTYVDGKVQSSQVPIRCPQLRCKYYISTAECRSFLPLASYESLE RAQAEANVLHSDGIYCPYPNCSVLLDPRECLSTRASSSSQSDNSCVECPVCRRFICVE CGVPWHLSMSCEEYQNLPLEERDAADITLHRLAQNKRWRRCQQCRRMIELTQGCYHMT CWCGHEFCYSCGAEYRDGQQTCQCAFWDEDNSEDLVTHSVQESEQWTWDTFNSFPMIM DAYSDQERSQLALIQRFLAGGFSLSEHHPYQSPPRCTDSYVDAMKDLHQLPWLERFVS VISDNYYEDYIQ" mRNA complement(join(22189014..22189042,22189483..22190414, 22191046..22191544,22192040..22192313)) /locus_tag="TCM_029352" /product="RING/U-box superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s15760.1" /inference="similar to AA sequence:frave:gene20065" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc63t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16341t1" mRNA complement(join(22189535..22189563,22189654..22190414, 22191046..22191544,22192040..22192313)) /locus_tag="TCM_029352" /product="RING/U-box superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s15760.1" /inference="similar to AA sequence:frave:gene20065" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc63t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16341t1" CDS complement(join(22189563,22189654..22190414, 22191046..22191465)) /locus_tag="TCM_029352" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene20065" /codon_start=1 /product="RING/U-box superfamily protein isoform 3" /protein_id="EOY27515.1" /db_xref="TAIR:AT4G19670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICJ9" /translation="MEDQKVLPDESSVSLVREVRAEEDEEDFRSCCEDDEVWKETEEV VKEEEREELDEFSVNMFFKGISLADTGDSGSGFSGIGVVMERSADSPVIQVQKKLDFY VEESVADYLAIMDGLTEAVQNKIHRVYAFTDSASLYDQITSEEKLDNPLLMALRERIL EHTRSLEEFVLKLVPSTNLLRPLQLAQVAIGVISCSVKGDKSLENCSICCEDKLSLMM ITMKCSHKFCSHCMRTYVDGKVQSSQVPIRCPQLRCKYYISTAECRSFLPLASYESLE RAQAEANVLHSDGIYCPYPNCSVLLDPRECLSTRASSSSQSDNSCVECPVCRRFICVE CGVPWHLSMSCEEYQNLPLEERDAADITLHRLAQNKRWRRCQQCRRMIELTQGCYHMT C" CDS complement(join(22189650..22190414,22191046..22191465)) /locus_tag="TCM_029352" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene20065" /codon_start=1 /product="RING/U-box superfamily protein isoform 2" /protein_id="EOY27514.1" /db_xref="TAIR:AT4G19670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICJ9" /translation="MEDQKVLPDESSVSLVREVRAEEDEEDFRSCCEDDEVWKETEEV VKEEEREELDEFSVNMFFKGISLADTGDSGSGFSGIGVVMERSADSPVIQVQKKLDFY VEESVADYLAIMDGLTEAVQNKIHRVYAFTDSASLYDQITSEEKLDNPLLMALRERIL EHTRSLEEFVLKLVPSTNLLRPLQLAQVAIGVISCSVKGDKSLENCSICCEDKLSLMM ITMKCSHKFCSHCMRTYVDGKVQSSQVPIRCPQLRCKYYISTAECRSFLPLASYESLE RAQAEANVLHSDGIYCPYPNCSVLLDPRECLSTRASSSSQSDNSCVECPVCRRFICVE CGVPWHLSMSCEEYQNLPLEERDAADITLHRLAQNKRWRRCQQCRRMIELTQGCYHMT CW" gene complement(22194664..22203265) /locus_tag="TCM_029353" /note="dbxref CacaoGD:Thecc1EG029353" mRNA complement(join(22194664..22195224,22195338..22195487, 22196298..22196991,22201671..22202240,22202835..22203265)) /locus_tag="TCM_029353" /product="Zinc transporter 10 precursor" /inference="alignment:exonerate- protein:2:ricco:30147.m014229" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011391t1" /inference="similar to AA sequence:ricco:30147.m014229" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2073t1" CDS complement(join(22194919..22195224,22195338..22195487, 22196298..22196991,22201671..22201777)) /locus_tag="TCM_029353" /note="dbxref ricco:30147.m014229; paralog of Thecc1EG011391t1" /codon_start=1 /product="Zinc transporter 10 precursor" /protein_id="EOY27516.1" /db_xref="TAIR:AT4G19690.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38856" /translation="MVGLQVKANRWEVTPRSATLESIECYEGSLTMEASRTFSISHPH NSKSQNQQSCERSRKEWSMASPLVKLFSIFLIIISLFTPPALSVVPEECQTETNGCTN KEKALPLKLIAIFSILIASVIGVCSPLFTRSIPALHPDRNLFVIVKCFAAGIILATGF MHVLPDSFDMLSSSCLKENPWHKFPFTGFVAMLSAIVTLMVDSMATSIYSKKCSSGVI PEGGPAIGEGQHEMAVVNIGQSHGHGHYHGPKPAGNLDQQLLRYRVIAMVLELGIVVH SVVIGLSLGASNNTCTIRGLVAALCFHQMFEGMGLGGCILQAKYKTLKKVIMVFFFSV TTPFGIALGIAMSKTYKENSPTALITVGLLNASSAGLLIYMALVDLLSADFMGPKLQG SIKLQIKSYAAVLLGAGGMSLMAKWA" mobile_element complement(22197849..22197900) /note="source:scaffold_6_CACTA_0716 6722 6774" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22201619..22203820) /note="source:CACAO_M_S_E52027_F3_scaffold_5 4425 6642" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22202963..22208472) /locus_tag="TCM_029355" /note="dbxref CacaoGD:Thecc1EG029355" mRNA complement(join(22202963..22202989,22205161..22208472)) /locus_tag="TCM_029355" /product="Disease resistance family protein / LRR family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s11720.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017172t1" /inference="similar to AA sequence:ricco:29929.m004582" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1023t1" CDS complement(22205225..22208203) /locus_tag="TCM_029355" /note="dbxref ricco:29929.m004582; paralog of Thecc1EG017172t1" /codon_start=1 /product="Disease resistance family protein / LRR family protein, putative" /protein_id="EOY27517.1" /db_xref="TAIR:AT2G34930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I5J4" /translation="MKKSGNHLLKLNFVQLFLCFLCFGNANDLNIGCSDIEKKALLVF KESLTDPFGRLSSWVGEDCCQWHGVSCKSETGQVTKLDLRNSLQTNKAAQKKSALRGK INSSLLNLKNLRYLDLSMNNFEGSPIPQVIGSLRTLSYLNLSYAQLGGSIPPHLGNLS NLQYLDLHSYSDSSSKLIATDLLWLRGLPSLEYLDMGGVDLSAVTDWLQQVNMLPSLS ELYLSSCKLLTFPFFLPFVNFTSLVAVDMSNNLFNSPMPGWIFNITGLKSIFLSSNNL IGTIPRAFANMHSLQHLDLSHQFLEGTVPGILGNLSNLKSLTLAFNNLSGNLIEFTDG LSKNNSLEVLDLTQNRFSGHLPDALGNLTNLRSLVLRENMFWGSIPESIRLFSSLQHL SLFGNPMNGSIPESIGQLSQLVVLDFGQTAWRGTISEQHFSNLTKLEKLEISSTSRKK ALTFSWGSQWTPPFNLKSIIIAHNKVGPSFPEWIKTQSNLATLFLNDVEISGKLPDWF WSWCSQRIDDLDLANNNISGTLPRSLQFHYETNVYLISNHLEGPIPLWSNVRRLYLWS NSFSGPIPDNISETMPMLRDLDLSRNFLTGGIPSSIVKLKDLISLVLSDNNLSGELPQ DWSQVQRLQVLDLANNSLSGEIPGSMGALHSLRLLILSSNSFVGEIPFSLQNCRGLWS FDLGKNKFSGKVPTWIGDSTPLLMILSLRSNLFTGNIPRHLCHLRSLHVMDLADNNLS GVIPTCLGNLTGMASEVQFEDAKRYEGNVMIVAKGREIEYSSTLPLVKIIDLSANNLT GKVPEEIIKLHRLGTLNLSNNHLTGSIPSNIGNLYLLETLDFSRNQLSGSIPPSLSSI SSLNHLNLSYNDLVGKIPSGNQLQTLNDPSIYKGNPGLCGVPLTNKCEDDRMSSDPHG DGDDTGENNVIEMKWFYIGILVGFLLGFWGVCGTLLLKKSWRLAYFQFIDEGKEKASM FIAVSLARWQRKLDSSRSRM" mobile_element complement(22210148..22210201) /note="source:scaffold_5_CACTA_0596 1803 1852" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22212603..22212684) /note="source:CACAO_M_E34141_F73_scaffold_4 114 199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22216024..22216081) /note="source:CACAO_M_E69835_F73_scaffold_9 115 171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22217396..22217450) /note="source:CACAO_M_S_E4863_F51_scaffold_1 5697 5755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22217409..22217466 /note="source:scaffold_8_CACTA_0853 3739 3791" /mobile_element_type="transposon:TIR/CACTA" gene complement(22220579..22222370) /locus_tag="TCM_029357" /note="dbxref CacaoGD:Thecc1EG029357" mRNA complement(join(22220579..22221331,22221474..22221831, 22221963..22222370)) /locus_tag="TCM_029357" /product="SBP family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:28580.m000048" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032411t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s15720.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16342t2" CDS complement(join(22220759..22221331,22221474..22221831, 22221963..22222018)) /locus_tag="TCM_029357" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG032411t1" /codon_start=1 /product="SBP family protein, putative isoform 1" /protein_id="EOY27518.1" /db_xref="Phytozome:POPTR_0015s15720.1" /db_xref="TAIR:AT5G45100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA56" /translation="MAVEARHMNLFPPQLITNSDFIKTNQGSGNIYNTQMDSCVPLVD AMQEASQLFPLYQSLVCDPTSAKTSINKADSGLTYNIPVSAPRKRPRDSFINGFDSYP VSQKNKISGVSSVLDDDILSQIQQQQQEIDRFIAEHTEKVRLELEERRKRQSRMLITA IQEGVMKKLKEKDEEIQRMGKLNWVLQERVKSLYVENQLWRDLAQTNEATANSLRTNL EQVLAHVSEERHVSGGAAALADDAESSCGSSDEGWRKVVPPQPQGRGGGLQDKAVVGH NRKCRKCGEKESSVLLLPCRHLCLCTMCGSTLVGTCPVCDSVTNASVHVNMS" mRNA complement(join(<22220766..22221331,22221474..22221834, 22221963..22222192)) /locus_tag="TCM_029357" /product="SBP family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:28580.m000048" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032411t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s15720.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc358t7; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16342t2" CDS complement(join(<22220768..22221331,22221474..22221834, 22221963..22222018)) /locus_tag="TCM_029357" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG032411t1" /codon_start=1 /product="SBP family protein, putative isoform 2" /protein_id="EOY27519.1" /db_xref="Phytozome:POPTR_0015s15720.1" /db_xref="TAIR:AT5G45100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA56" /translation="MAVEARHMNLFPPQLITNSSDFIKTNQGSGNIYNTQMDSCVPLV DAMQEASQLFPLYQSLVCDPTSAKTSINKADSGLTYNIPVSAPRKRPRDSFINGFDSY PVSQKNKISGVSSVLDDDILSQIQQQQQEIDRFIAEHTEKVRLELEERRKRQSRMLIT AIQEGVMKKLKEKDEEIQRMGKLNWVLQERVKSLYVENQLWRDLAQTNEATANSLRTN LEQVLAHVSEERHVSGGAAALADDAESSCGSSDEGWRKVVPPQPQGRGGGLQDKAVVG HNRKCRKCGEKESSVLLLPCRHLCLCTMCGSTLVGTCPVCDSVTNASVHVN" gene 22222472..22242415 /locus_tag="TCM_029358" /note="dbxref CacaoGD:Thecc1EG029358" mRNA join(22222472..22222613,22241235..22242415) /locus_tag="TCM_029358" /product="Bromodomain transcription factor, putative" /inference="alignment:exonerate-protein:2:frave:gene20061" /inference="similar to AA sequence:Phytozome:POPTR_0015s15700.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10553t00001" mobile_element complement(22224554..22224691) /note="source:CACAO_M_S_E16543_F3_scaffold_2 4780 4866" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22225418..22225879) /note="source:CACAO_MITE_S192_scaffold_8 2 436" /mobile_element_type="transposon:TIR/MITE" mobile_element 22225469..22225880 /note="source:CACAO_MITE_S163_scaffold_6 1 412" /mobile_element_type="transposon:TIR/MITE" mobile_element 22225758..22225899 /note="source:CACAO_on_E33_A_scaffold_3 7472 7618" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22226815..22228007) /note="source:CACAO_PIF_E144_scaffold_10 1203 2355" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS 22241383..22242192 /locus_tag="TCM_029358" /codon_start=1 /product="Bromodomain transcription factor, putative" /protein_id="EOY27520.1" /db_xref="Phytozome:POPTR_0015s15700.1" /db_xref="TAIR:AT1G31240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICK7" /translation="MNKPKSRRKSNTQQETTPPGDFSFNITKVAVSQICKSVGFRRSQ VSALETLTLVATKYLEALGKSAVSFSNAASRSQSNLLDLTNAIHDLSLRAGFTGASTL YDSNCLLKSSVLEGLSCFVRSTDEIPFAKPIERAKEREREGVKASPGNLQRGAHVPEW LPGFPHMGSNEKSKKRVNGEELWENSSSVLGCQIDVLEDKRNGGNGCKLAKKRTRVKF RINGVGKRMHWNRYSANNEFTQTKDEDAEAEYKNPVKSKEAQTLVFKRRKR" gene complement(22242854..22245867) /locus_tag="TCM_029360" /note="dbxref CacaoGD:Thecc1EG029360" mRNA complement(join(22242854..22243196,22243556..22243618, 22244233..22244353,22244443..22244584,22245413..22245778)) /locus_tag="TCM_029360" /product="Vesicle-associated membrane protein 726 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400018261.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020369t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012100001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16365t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16365t1" CDS complement(join(22243047..22243196,22243556..22243618, 22244233..22244353,22244443..22244584,22245413..22245602)) /locus_tag="TCM_029360" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG020369t1" /codon_start=1 /product="Vesicle-associated membrane protein 726 isoform 1" /protein_id="EOY27521.1" /db_xref="Phytozome:GSVIVT01012100001" /db_xref="TAIR:AT1G04760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7X9C5" /translation="MVQKSLIYAFVSRGEVILAEYTEFSGNFNSIAFQCLQKLPSSNN KFTYNCDGHTFNYLVDNGYTYCVVADESAGRQVPIAFLERIKDDFVSKYGSGKAATAP ANGLNKEFGPKLKEHMQYCVEHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIE LLVDKTENLHQQAQDFRSTGTKIRRKMWLQNMKIKLIVLGILIALILIIVLSVCHGFN CGK" mRNA complement(join(22243175..22243607,22244227..22244353, 22244443..22244584,22245413..22245867)) /locus_tag="TCM_029360" /product="Vesicle-associated membrane protein 726 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400018261.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002981t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s15690.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc112t10; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16365t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc111t1" CDS complement(join(22243578..22243607,22244227..22244353, 22244443..22244584,22245413..22245602)) /locus_tag="TCM_029360" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002981t1" /codon_start=1 /product="Vesicle-associated membrane protein 726 isoform 2" /protein_id="EOY27522.1" /db_xref="Phytozome:POPTR_0015s15690.1" /db_xref="TAIR:AT2G33120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7X9C5" /translation="MVQKSLIYAFVSRGEVILAEYTEFSGNFNSIAFQCLQKLPSSNN KFTYNCDGHTFNYLVDNGYTYCVVADESAGRQVPIAFLERIKDDFVSKYGSGKAATAP ANGLNKEFGPKLKEHMQYCVEHPEEISKLAKVKAQVSEVKGVMMENIEKVDRGKDRAA SG" gene complement(22246198..22247916) /locus_tag="TCM_029361" /note="dbxref CacaoGD:Thecc1EG029361" mRNA complement(join(22246198..22247013,22247159..22247341, 22247524..22247916)) /locus_tag="TCM_029361" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029364t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.37 coverage" CDS complement(join(22246894..22247013,22247159..22247341, 22247524..22247688)) /locus_tag="TCM_029361" /note="paralog of Thecc1EG029364t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27523.1" /translation="MGSNDIIMRKLSLSNGVNYLDNLISKFRSQLTGSISSTYSTGIR CSVVPFIPIEPIAVTNAPILGCNPFERDPNPSDACVASINEQAKLYNVKLKSMLQELT ANLARSTFVYLDACDLKMQILLAVRCRGGASSRVCVERTKICILGSIPSNIIC" gene complement(22249142..22256856) /locus_tag="TCM_029362" /note="dbxref CacaoGD:Thecc1EG029362" mRNA complement(join(22249142..22249555,22249650..22249716, 22250320..22250444,22250539..22250641,22250733..22251006, 22251103..22251252,22256590..22256856)) /locus_tag="TCM_029362" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027051t1" /inference="similar to AA sequence:Phytozome:Sb10g016776.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS complement(join(22249306..22249555,22249650..22249716, 22250320..22250444,22250539..22250641,22250733..22251006, 22251103..22251246)) /locus_tag="TCM_029362" /note="paralog of Thecc1EG027051t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27524.1" /db_xref="Phytozome:Sb10g016776.1" /translation="MDYQYLTDLQLFKPPATIKVKILRIWKSTTPDNPENRLSLDFLI ADAKKNVMQAMVRGFDAPLFRLILKEGSIYLIDKYRVMKSKHNFNVLPEDLMIVLSRM SKLKEVVEDSSQYPDYYFNFVHFKDLPHKIYKKKVLTDFVGMVTTITPVTKVQLNNRD IPVQKRDIYIQNASCESLKVVLYGDIALSVEEQEILQRNTNVVLVFTKLMIKTYMPGL RFCAGKFLCPIHDEKTPVLTMIQELTIEDLIGKIQLLAFGQQTEKLIGATIGELAVIK TINKMVLPPPVKALINTRRTFKVGLTGKAIEAGLTIFKIFDSTN" gene complement(22252192..22255677) /locus_tag="TCM_029363" /note="dbxref CacaoGD:Thecc1EG029363" mRNA complement(join(22252192..22252402,22254264..22254488, 22255308..22255677)) /locus_tag="TCM_029363" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g017170.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(22252266..22252402,22254264..22254488, 22255308..22255563)) /locus_tag="TCM_029363" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27525.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6UU02" /translation="MPIFAHQNTSNIINKFIVEGLIKMFDETNEIFKVFRQARDRCEE SDNISIQLKLLETRNNRDKNYATPIGSERAGLIVGDVGESDITYTIEFQKRGPPHVHI LLWLESTAKCMNDEDVDRIISAEIPNKEHDPVGHEAISNFMIHGQCGMHNPSSPCMTR GNGNIPAFNYEDDDEPCGIEIPDDLLLPSVEDMIEAIVSAVDDKL" mobile_element complement(22261437..22261955) /note="source:scaffold_8_CACTA_0858 14208 14736" /mobile_element_type="transposon:TIR/CACTA" gene complement(22262479..22264596) /locus_tag="TCM_029364" /note="dbxref CacaoGD:Thecc1EG029364" mRNA complement(join(22262479..22262788,22262916..22263168, 22263264..22263479,22263619..22263749,22263874..22264596)) /locus_tag="TCM_029364" /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s10430.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029365t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s10430.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1663t1" CDS complement(join(22262565..22262788,22262916..22263168, 22263264..22263479,22263619..22263749,22263874..22264126)) /locus_tag="TCM_029364" /note="paralog of Thecc1EG029365t1" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /protein_id="EOY27526.1" /db_xref="Phytozome:POPTR_0008s10430.1" /db_xref="TAIR:AT2G23540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HIN0" /translation="MGTNLNRVFIIHVIYQILAIHYSPGTCSAQNVSAAFIFGDSLVD VGNNYYIDTDAMPMFPNGIDFVNGSPSGRYTNARTIGDIIEEEIGFKNFTPPYLNPNT TGDVILKGVNYASSGSGILNSTGSVFGAPICMDQQINNFAKTRQDIISRIGAPAAQGL LTQAFYLVVIGSNDIFSAEASTSRDVYLDNLISKFQSQLTTLYSLDARKIAVTNAPVV GCIPFEKDLHSSQGGCVDFLNELAKLYNTRLKSLLQELTTNLAGSTFVYLDLYAISED ILQNYKSYGFENAESACCQVIGQHGGLVPCESFSRVCRDRTKYVFWDPFHPTETANLI TAKHALDGGLNYVSPINIRQLMNS" gene complement(22267312..22269328) /locus_tag="TCM_029365" /note="dbxref CacaoGD:Thecc1EG029365" mRNA complement(join(22267312..22267703,22267812..22268064, 22268159..22268380,22268646..22268776,22268853..22269328)) /locus_tag="TCM_029365" /product="GDSL-like Lipase/Acylhydrolase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s10430.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029364t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s10430.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc806t4" CDS complement(join(22267480..22267703,22267812..22268064, 22268159..22268380,22268646..22268776,22268853..22269105)) /locus_tag="TCM_029365" /note="paralog of Thecc1EG029364t1" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein, putative" /protein_id="EOY27527.1" /db_xref="Phytozome:POPTR_0008s10430.1" /db_xref="TAIR:AT3G50400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HIN0" /translation="MGTISNRLIIICSMCQILAVLSSPGICSAANVSAVFVFGDSLVE AGNNYYINTIAKPGYPNGIDFAKGSPSGRYTNARTVADIIEEELGFENYSPPYLAPNT TGDVILKGVNYASSGAGILTITGSIFGERVCMDKQVSYFAKTRQDIILRLGATAGRIL LREALYLLAIGANDILFQQISTTQDITQYLDDVLSKFKSQLITLYNLDARKIIVTGSP PVGCIPFERDVRSSPDSCVSSMNDLAKLYNSRLKSLLQKLTTNLPGSTFVYVDNFAIL EDIMDNYRSYGFESVDSACCRVIGRRGGLVPCGSLSRVCPDRTKFVFWDPFHPTESAN LIGAKHALDGGLQYVSPMNIRQLANA" mobile_element 22272420..22273842 /note="source:CACAO_M_E12097_F20_scaffold_2 2 1562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22275568..22275791 /note="source:INTACT151F_F342_scaffold_2-int 2647 2870" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22275892..22277731 /note="source:CACAO_M_S_E84604_F20_scaffold_6 3433 5274" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22278635..22280157) /note="source:CACAO_M_E22931_F20_scaffold_3 172 1636" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22279969..22281505) /locus_tag="TCM_029368" /note="dbxref CacaoGD:Thecc1EG029368" mRNA complement(join(22279969..22281180,22281299..22281505)) /locus_tag="TCM_029368" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc793t7" CDS complement(join(22280929..22281180,22281299..22281430)) /locus_tag="TCM_029368" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27528.1" /translation="MGTMLNRLIIISAMYQILAIHFSSSICSAKKVSAMFVFGDSLVE LFDVIKLKVALWARAKWPETCSTAFGYLPLPHVCQKSSTCEMGCSLAGTLEFNVDGFV RGSPGDADIGDLLRDNTGRVRVLFS" gene complement(22283180..22286328) /locus_tag="TCM_029369" /note="dbxref CacaoGD:Thecc1EG029369" mRNA complement(join(22283180..22283911,22284600..22284716, 22285231..22285329,22285527..22285908,22286282..22286328)) /locus_tag="TCM_029369" /product="FKBP-like peptidyl-prolyl cis-trans isomerase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012101001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029380t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012101001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc793t13" CDS complement(join(22283792..22283911,22284600..22284716, 22285231..22285329,22285527..22285865)) /locus_tag="TCM_029369" /note="paralog of Thecc1EG029380t1" /codon_start=1 /product="FKBP-like peptidyl-prolyl cis-trans isomerase family protein" /protein_id="EOY27529.1" /db_xref="Phytozome:GSVIVT01012101001" /db_xref="TAIR:AT4G19830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81864" /translation="MLLIHCYASSTHHRASPHPTRHYLFRETPASSPIISATFPHPSS SSSSSTSSRRTLSVSIATTTISSLILSFYSSALSKSAIKTDFFDLPNSGGVKALDLRP GTGATPVDGDQVAIHYYGRLVAKQGWRFDSTYDHKDGTGEPIPFVISGIEAAVRSMKV GGTRQVIIPPSQGYQNTLQEPIPPNFFDRQRLFTTIFNPTRLANGEGSTLGTVIFDIE LISLRH" mobile_element 22286364..22286490 /note="source:scaffold_5_CACTA_0610 5085 5223" /mobile_element_type="transposon:TIR/CACTA" gene 22287461..22293400 /locus_tag="TCM_029371" /note="dbxref CacaoGD:Thecc1EG029371" mRNA join(22287461..22287742,22288343..22288437, 22288569..22289610,22290253..22290762,22291348..22291536, 22292243..22292339,22292419..22293400) /locus_tag="TCM_029371" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s15670.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029382t1" /inference="similar to AA sequence:ricco:29617.m000137" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b028403t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5924t2" mRNA join(22287467..22287742,22288343..22288437, 22288569..22289610,22290253..22290762,22291348..22291536, 22292209..22292339,22292419..22293400) /locus_tag="TCM_029371" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s15670.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029382t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s12040.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5924t2" CDS join(22287647..22287742,22288343..22288437, 22288569..22289610,22290253..22290762,22291348..22291536, 22292209..22292339,22292419..22292662) /locus_tag="TCM_029371" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029382t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27530.1" /db_xref="Phytozome:POPTR_0012s12040.1" /db_xref="TAIR:AT1G10180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICL0" /translation="MESSEEDDDFPSIESITPQSKIDSVHQSHTEKGIRKLCCELLDL KDAVENLCGNMRTKYLAFLRISEEVVEMEHELIELRRHISSQGILVQDLISGVCCELD EWNRANADMNDTPPDPEISKIQDPLPNKMDDHKKIFLEKIDVLLAEHKVEEAQQALEA EERNFPELKGSGDSSTEASTYKSSFLERKAMLEDQLIEIAEQPAVSANELKKALSGLI KLGKGPSAHQLLLKCSGSRLQKNIEVFLPSCSVCPKTFPATLSRLVFSMISLTTRESG LIFGDNPVYTNRVVQWAEWEIEFFVRLVKDNAPSSETVSALRAASICVQDSLNYCSML ESQGLKLSKLLLVLLRPYIEEVLELNFRRARKAVFDSIEVDENLPMSPHFVSSLTAFA TSSDSVLIDSGMKFLFIMADILDQLTPLVVLHFGGNVLTRISQLFDKYMDALIRALPG PSDDDSLTELKETIPFRAETDSEQLAILGIAFTIMDELLPSRVVKIWSPKSESQEPGN EHIVPNASTTTELKDWRRQLQHSFDKLRDHFCRQYVLSFIYSREGKTRLNAQIYLGGD GEDSQWDTLPSLPFQALFSKLQQLATVAGDVLLGKEKLQKILLARLTETVLMWLSDEQ EFWGVFEDKSTPLQPLGLQQLILDMHFTVEIARFAGYPSRHVHQIASAITARAIRTFT ARDVESALPEDEWFVETAKSAINKLLMVASGSDTSEIDEDHIMIHDDIGSDSDDSASS LSSVESFESFASASMGELESPNFTDQES" CDS join(22287647..22287742,22288343..22288437, 22288569..22289610,22290253..22290762,22291348..22291536, 22292243..22292296) /locus_tag="TCM_029371" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29617.m000137; paralog of Thecc1EG029382t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY27531.1" /db_xref="TAIR:AT1G10180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICL0" /translation="MESSEEDDDFPSIESITPQSKIDSVHQSHTEKGIRKLCCELLDL KDAVENLCGNMRTKYLAFLRISEEVVEMEHELIELRRHISSQGILVQDLISGVCCELD EWNRANADMNDTPPDPEISKIQDPLPNKMDDHKKIFLEKIDVLLAEHKVEEAQQALEA EERNFPELKGSGDSSTEASTYKSSFLERKAMLEDQLIEIAEQPAVSANELKKALSGLI KLGKGPSAHQLLLKCSGSRLQKNIEVFLPSCSVCPKTFPATLSRLVFSMISLTTRESG LIFGDNPVYTNRVVQWAEWEIEFFVRLVKDNAPSSETVSALRAASICVQDSLNYCSML ESQGLKLSKLLLVLLRPYIEEVLELNFRRARKAVFDSIEVDENLPMSPHFVSSLTAFA TSSDSVLIDSGMKFLFIMADILDQLTPLVVLHFGGNVLTRISQLFDKYMDALIRALPG PSDDDSLTELKETIPFRAETDSEQLAILGIAFTIMDELLPSRVVKIWSPKSESQEPGN EHIVPNASTTTELKDWRRQLQHSFDKLRDHFCRQYVLSFIYSREGKTRLNAQIYLGGD GEDSQWDTLPSLPFQALFSKLQQLATVAGDVLLGKEKLQKILLARLTETVLMWLSDEQ EFWGVFEDKSTPLQPLGLQQLVLRVTHLGMCTRLHLP" gene 22293447..22296763 /locus_tag="TCM_029372" /note="dbxref CacaoGD:Thecc1EG029372" mRNA join(22293447..22293706,22293804..22293896, 22294480..22294661,22294945..22295258,22296741..22296763) /locus_tag="TCM_029372" /product="Subunit C, putative" /inference="alignment:exonerate-protein:2:frave:gene20051" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029382t1" /inference="similar to AA sequence:frave:gene20051" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5931t1" CDS join(22293550..22293706,22293804..22293896, 22294480..22294661,22294945..22295007) /locus_tag="TCM_029372" /note="dbxref frave:gene20051; paralog of Thecc1EG029382t1" /codon_start=1 /product="Subunit C, putative" /protein_id="EOY27532.1" /db_xref="TAIR:AT2G39440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA63" /translation="MEEDKGTTGKINLRQKDKEEEVSISGQVHHLPCCIKFNGPCSVS QYFRPKAKGMEIDGLAVEEAHFRGRKLQGTTISIPNGYSGFVLGKNNSGKRKACDVSE GSLNSWQMKAKFDKLTYWNHDSPPSTDDAFLRSFHWFAVAEALHKPVKAEDLTAASIA LEEK" gene 22296810..>22343613 /locus_tag="TCM_029373" /note="dbxref CacaoGD:Thecc1EG029373" mRNA join(22296810..22296914,22296997..22297088, 22297173..22297648) /locus_tag="TCM_029373" /product="Phloem protein 2, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G31200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029383t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s15500.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g12678t00001" mRNA join(<22296838..22296914,22296997..22297088, 22297173..22297420,22330862..22330866,22343540..>22343613) /locus_tag="TCM_029373" /product="Phloem protein 2, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s15500.1.2" /inference="alignment:exonerate- protein:2:TAIR:AT1G31200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029383t1" /inference="similar to AA sequence:frave:gene20050" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is medium, protein is partial; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g12678t00001; inference alignment:Newbler:10:TSA:cgbaP1_g12678t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5937t1" CDS join(<22296840..22296914,22296997..22297088, 22297173..22297420,22330862..22330866,22343540..>22343611) /locus_tag="TCM_029373" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene20050; paralog of Thecc1EG029383t1" /codon_start=1 /product="Phloem protein 2, putative isoform 2" /protein_id="EOY27534.1" /db_xref="TAIR:AT1G31200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D0R6I7" /translation="FSTNIFTMATKPHHDADVSAIAEERGVYTFKPRAFNIVWGNDSR YWRIPSRPTSARNNNDEVAELVQVSWLEVTGVAKLENSKTYQVTFTLSFKENASGWSG CPVFLMAKVGKKGKYKWKRLKELESLPKVPTEVPSNSEPFLVEVPDDVPDKRLYFGLY EVWS" CDS join(22296861..22296914,22296997..22297088, 22297173..22297554) /locus_tag="TCM_029373" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029383t1" /codon_start=1 /product="Phloem protein 2, putative isoform 1" /protein_id="EOY27533.1" /db_xref="Phytozome:POPTR_0015s15500.1" /db_xref="TAIR:AT1G31200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D0R6I7" /translation="MATKPHHDADVSAIAEERGVYTFKPRAFNIVWGNDSRYWRIPSR PTSARNNNDEVAELVQVSWLEVTGVAKLENSKTYQVTFTLSFKENASGWSGCPVFLMA KVGKKGKYKWKRLKELESLPKVPTEVPSNSEPFLVEVPKDVNDTRLYFGLYEVWSGQW KKGLRVHGATVKEKN" mobile_element 22298629..22301219 /note="source:INTACT483_F74_scaffold_6-int 1 2591" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22302074..22302593) /note="source:scaffold_8_CACTA_0858 14208 14736" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22308374..22309121 /note="source:INTACT60_F127_scaffold_9-int 1371 2194" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22309539..22309663) /note="source:CACAO_M_E33698_F132_scaffold_4 5447 5575" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22309709..22312538) /note="source:CACAO_M_E57391_F87_scaffold_9 1 2810" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22317476..22318531) /locus_tag="TCM_029376" /note="dbxref CacaoGD:Thecc1EG029376" mRNA complement(join(22317476..22317743,22318285..22318531)) /locus_tag="TCM_029376" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0816s00210.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029365t1" /inference="similar to AA sequence:ricco:29889.m003304" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5946t1" CDS complement(join(22317520..22317743,22318285..22318405)) /locus_tag="TCM_029376" /note="dbxref ricco:29889.m003304; paralog of Thecc1EG029365t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27535.1" /translation="MDTQASYFAKTRQDIILRLGATAGQILLGEALYLLAIGTNGFES VDSACCRVIGRRGGLVPCGSLSRVCPDRTKFVSWDPFHPTESANLIGAKHAFDGGLQY VSPMNIRQLANA" gene complement(22321367..22322599) /locus_tag="TCM_029377" /note="dbxref CacaoGD:Thecc1EG029377" mRNA complement(join(22321367..22322257,22322352..22322599)) /locus_tag="TCM_029377" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025243t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.38 coverage" CDS complement(join(22322048..22322257,22322352..22322474)) /locus_tag="TCM_029377" /note="paralog of Thecc1EG025243t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27536.1" /translation="MGGTLKFNVDGVVRGSPGDEGIGDLLRDNTGRVKSPLLQVQSES SNAAKWVNDPKNAPWQMRKWVLNIEGLRRQINEWQVVHILSETNKDADNLAKAGVCRS DDLLSVFA" mobile_element 22322804..22322854 /note="source:INTACT415F_F22_scaffold_4-int 2193 2243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22322810..22322864) /note="source:scaffold_5_CACTA_0584 1926 1980" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22322816..22322888) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3187 3259" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22323073..22323922 /locus_tag="TCM_029378" /note="dbxref CacaoGD:Thecc1EG029378" mRNA 22323073..22323922 /locus_tag="TCM_029378" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.68 coverage" CDS 22323400..22323630 /locus_tag="TCM_029378" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27537.1" /translation="MQDKVLLRLPFGFNLNPLYGADIERTEFLSHFFGFYVVLIVLFV FSGCVGMFIGFFSLLARIVVSSPVLIQMLPEG" gene complement(22324233..22325885) /locus_tag="TCM_029379" /note="dbxref CacaoGD:Thecc1EG029379" mRNA complement(join(22324233..22324500,22324606..22324858, 22324946..22325170,22325674..22325885)) /locus_tag="TCM_029379" /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0816s00210.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029364t1" /inference="similar to AA sequence:ricco:29889.m003304" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc774t11" CDS complement(join(22324445..22324500,22324606..22324858, 22324946..22325170,22325674..22325796)) /locus_tag="TCM_029379" /note="dbxref ricco:29889.m003304; paralog of Thecc1EG029364t1" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /protein_id="EOY27538.1" /db_xref="TAIR:AT3G50400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HIN0" /translation="MLNRLIIVSAMYQILAIHFSPSICSAKKVSAMFVFGDSLVEGAH ICMDAQINNFAKTRQDIISRIGAAAARKLLRQALYIIIKGANVVFDKAASSSHDDDSI YFDDMISKFRSQLTSLYNLDAREIAVTNSRPVGCTPNQRDRFSTDDCVVARVNQLSKL YNTRLKNLLTTLTTSLAGSTFVYQDTYAALEDILQNYKSYGIENADSACCRVLGKPGG " gene complement(22324833..>22330927) /locus_tag="TCM_029380" /note="dbxref CacaoGD:Thecc1EG029380" mRNA complement(join(22324833..22324858,22324946..22325757, 22328355..22328691,22329395..22329511,22330237..22330359, 22330557..>22330927)) /locus_tag="TCM_029380" /product="FKBP-like peptidyl-prolyl cis-trans isomerase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s12020.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029369t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012101001" /note="transcript variant 1; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc458t35; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc458t35" mRNA complement(join(22328151..22328691,22329395..22329511, 22330237..22330359,22330542..>22330921)) /locus_tag="TCM_029380" /product="FKBP-like peptidyl-prolyl cis-trans isomerase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s12020.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029369t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012101001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00225t00004; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc458t35; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc782t17" CDS complement(join(22328572..22328691,22329395..22329511, 22330237..22330359,22330557..>22330925)) /locus_tag="TCM_029380" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029369t1" /codon_start=1 /product="FKBP-like peptidyl-prolyl cis-trans isomerase family protein isoform 1" /protein_id="EOY27539.1" /db_xref="Phytozome:GSVIVT01012101001" /db_xref="TAIR:AT4G19830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81864" /translation="VQLQSNKEDNAADPLLCIITSPPCFPPPHPPSPFRETPASSPII SATFPHPSSSSLSSTRSSRRTLSVSIATTTISSLILSFYSSALSKSAINTDFFDLPNS GGVKALDLRPGTGATPVDGDQVVIHYYGRLAAKQGWRFDSTYDHKDGIGEPIPFVFTL GSGKVISGIEAAVRSMQVGGTRRVIIPPSQGYQNTSQEPIPPNFFDRQRLFTTIFNPT RLANGEGSTLGTLIFDIELISLRH" CDS complement(join(22328572..22328691,22329395..22329511, 22330237..22330359,22330542..>22330919)) /locus_tag="TCM_029380" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029369t1" /codon_start=1 /product="FKBP-like peptidyl-prolyl cis-trans isomerase family protein isoform 2" /protein_id="EOY27540.1" /db_xref="Phytozome:GSVIVT01012101001" /db_xref="TAIR:AT4G19830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81864" /translation="LQSNKEDNAADPLLCIITSPPCFPPPHPPSPFRETPASSPIISA TFPHPSSSSLSSTRSSRRTLSVSIATTTISSLILSFYSSALSKSAINTDFFDLPNSGG VKALDLRPGTGATPVDGDQVLSSIVVIHYYGRLAAKQGWRFDSTYDHKDGIGEPIPFV FTLGSGKVISGIEAAVRSMQVGGTRRVIIPPSQGYQNTSQEPIPPNFFDRQRLFTTIF NPTRLANGEGSTLGTLIFDIELISLRH" mobile_element complement(22332362..22333355) /note="source:CACAO_hAT_E2538_scaffold_5 1 1025" /mobile_element_type="transposon:TIR/hAT" gene 22333512..22341539 /locus_tag="TCM_029382" /note="dbxref CacaoGD:Thecc1EG029382" mRNA join(22333512..22333765,22334392..22334459, 22334591..22334884,22334963..22335128,22335316..22335633, 22336314..22336823,22338307..22338386,22338461..22338654, 22339554..22339739,22339837..22339929,22340513..22340694, 22340978..22341539) /locus_tag="TCM_029382" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene20051.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029371t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s15670.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5956t1" CDS join(22333670..22333765,22334392..22334459, 22334591..22334884,22334963..22335128,22335316..22335633, 22336314..22336823,22338307..22338386,22338461..22338654, 22339554..22339739,22339837..22339929,22340513..22340694, 22340978..22341040) /locus_tag="TCM_029382" /note="paralog of Thecc1EG029371t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27541.1" /db_xref="Phytozome:POPTR_0015s15670.1" /db_xref="TAIR:AT1G10180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICL0" /translation="MESTEEDDYFPSIESITPQSKIDSVHQSHTEKFGSEDAVENLCG NMRTKYLAFLRISEEVVEMEHELIELRKHISSQGILVQDLMTGVCCELDEWNWANADM NDTPPDPEISEVQDPLANKMDDHKKIFLEKIDVLLAEHEVEEAQEALEAEEKAMLEDQ LIEIAEQPAVSTNELKKALSGLIRLGKGPSAHQLLLKCSGSRLPKNIEDNAPSSETVS ALRAASICVQDSLNYSSRLESQGLKISKLLLVLLRPYIEEVLELNFRRARKAVFDSIE VEEHLPMSPHFVSSLSAFATSLDSVLVDSGMKFLYIMADILEQLTPLVVLHFGGNVLT RISQLLDKYMDALIRALPGPSDDDSLTELKQTIPFRAETDSEQLGILGIAFTIMDELL PSRVVKIWSPKSENQEPGNENIVPNASTTTELEDWRRQLQHSFDKLRYHVCRQYVLSF IYSREGKTRLNAQIYLGGDGEDSQWDTLPSLPFPPSRHVHQIASAVTALAIRTFTARE VESALPEDEWFVETAKSAINRLLIVASGSDTSEIDDDHIMIHDDIGSDSASSLSSVKS FESFASASMGLGFELKRGKMEEDKGTTGKINLRQKDKEEEVNISGQVHHLPCCIKFNG PCSVSQYFRPKAKGMEIDGLAVEEAHFRGRKLQGTTISIPNGYSGFVLGKNNSGKRKA CNVSEGSLNSWQMKAKFDKLTYWNHDSPPSKDDAFLRSFHWFAVAEALHKPVKAEDLT AASIALEEK" gene 22342022..22343901 /locus_tag="TCM_029383" /note="dbxref CacaoGD:Thecc1EG029383" mRNA join(22342022..22342313,22342866..22343040, 22343123..22343202,22343287..22343901) /locus_tag="TCM_029383" /product="Phloem protein 2-A10, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s15500.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029373t1" /inference="similar to AA sequence:frave:gene20050" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5937t3" CDS join(22342246..22342313,22342866..22343040, 22343123..22343202,22343287..22343668) /locus_tag="TCM_029383" /note="dbxref frave:gene20050; paralog of Thecc1EG029373t1" /codon_start=1 /product="Phloem protein 2-A10, putative" /protein_id="EOY27542.1" /db_xref="TAIR:AT1G31200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D0R6I7" /translation="MSDGCGRGIKFSIEDPPALNQEIKIEFLPTSHPLFPAYKITCLT VTFISNYIGPFAFSTNIFTMATKPHHDADGGPITDEQGVYRFKPRAFNIVWGNDNRYW RIPSTRSNNDEVAELVQVSWLEVTGLVELRPLKTYQVTFTLSFKEDAFGWNGSPVFLM AKVGKKGKYKWRRLKELESLPKVPTEVPSNSEPFLVEVPDDVPDKRLYFGLYEVWSGK WKGGLRVHGATVKEKK" gene 22344882..22346197 /locus_tag="TCM_029384" /note="dbxref CacaoGD:Thecc1EG029384" mRNA join(22344882..22345445,22345570..22345691, 22345785..22346197) /locus_tag="TCM_029384" /product="Phloem protein 2-A1, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400018297.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027002t3" /inference="similar to AA sequence:Phytozome:GSVIVT01012084001" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10241t00001" CDS join(22345167..22345445,22345570..22345691, 22345785..22346154) /locus_tag="TCM_029384" /note="paralog of Thecc1EG027002t3" /codon_start=1 /product="Phloem protein 2-A1, putative" /protein_id="EOY27543.1" /db_xref="Phytozome:GSVIVT01012084001" /db_xref="TAIR:AT4G19840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA66" /translation="MGASESQVSVPNVENNIVKPQNQENHAQPMAKPAHPELVDAKAK AMEKTEAIIQLPQNYKAILRDADSPVESSSVDKLLSQLHAGVYLNQKRKKYWVDKKSN KNCFMLFARDLSITWAEDYRYWHWSNQKETNSDVFIDVAELLQVCWLEIHVKFDVAKL SPGTLYGVAFVFMLRDEAFGWEFPVNFRVTLPNGYKVEHKVNLMTKPKEVWIEIPIGE FTTSSQSVGEIDIYCHEYEIGNWKGGLIVKGVSILPKN" gene complement(22346326..22351541) /locus_tag="TCM_029385" /note="dbxref CacaoGD:Thecc1EG029385" mRNA complement(join(22346326..22346742,22347667..22347824, 22347952..22348053,22348470..22348583,22348696..22348794, 22349185..22349237,22349328..22349385,22349551..22349639, 22349900..22350033,22350818..22350885,22350992..22351541)) /locus_tag="TCM_029385" /product="Myo-inositol monophosphatase like 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s12120.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s12120.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc307t10_C2; alternateUTRof:Thecc1EG029385t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc300t7_C2; inference alignment:Newbler:10:TSA:cgbaP1_g01137t00001" mRNA complement(join(22346400..22346742,22346941..22347023, 22347667..22347824,22347952..22348053,22348470..22348583, 22348696..22348794,22349185..22349237,22349328..22349385, 22349551..22349639,22349900..22350033,22350818..22350885, 22350992..22351354)) /locus_tag="TCM_029385" /product="Myo-inositol monophosphatase like 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s12120.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s12120.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc300t7_C2" mRNA complement(join(22346588..22346742,22346941..22347002, 22347667..22347824,22347952..22348053,22348470..22348583, 22348696..22348794,22349185..22349237,22349328..22349385, 22349551..22349639,22349900..22350033,22350818..22350885, 22350992..22351425)) /locus_tag="TCM_029385" /product="Myo-inositol monophosphatase like 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s12120.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s12120.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01954t00001; alternateUTRof:Thecc1EG029385t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc300t7_C2; inference alignment:Newbler:10:TSA:cgbaP1_g01137t00001" mRNA complement(join(22346714..22346742,22346941..22347023, 22347667..22347824,22347952..22348049,22348470..22348583, 22348696..22348794,22349185..22349237,22349328..22349385, 22349551..22349639,22349900..22350033,22350818..22350885, 22350992..22351541)) /locus_tag="TCM_029385" /product="Myo-inositol monophosphatase like 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s12120.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s12120.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc300t3_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc300t7_C2; inference alignment:Newbler:10:TSA:cgbaP1_g01137t00001" mRNA complement(join(22346997..22347206,22347667..22347824, 22347952..22348053,22348470..22348583,22348696..22348794, 22349185..22349237,22349328..22349385,22349551..22349639, 22349900..22350033,22350818..22350885,22350992..22351541)) /locus_tag="TCM_029385" /product="Myo-inositol monophosphatase like 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s12120.1" /inference="similar to AA sequence:Phytozome:POPTR_0012s12120.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc300t6_C2; alternateUTRof:Thecc1EG029385t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc300t7_C2; inference alignment:Newbler:10:TSA:cgbaP1_g01137t00001" CDS complement(join(22347726..22347824,22347952..22348053, 22348470..22348583,22348696..22348794,22349185..22349237, 22349328..22349385,22349551..22349639,22349900..22350033, 22350818..22350885,22350992..22351297)) /locus_tag="TCM_029385" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Myo-inositol monophosphatase like 1 isoform 1" /protein_id="EOY27544.1" /db_xref="Phytozome:POPTR_0012s12120.1" /db_xref="TAIR:AT1G31190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94F00" /translation="MGRSLVFSTNIPLRFSQTPRSISPRVHPNQYQPYKFTANSPLGH QKVGFLSTNSTRKLCTGALLSEVSNQRQYPKVGAKSTGPIPPSQLIEVVETAAKAGAE VVMDAVNKPRNITYKGLTDLVTDTDKMSEAAILEVVKRNFGDHLILGEEGGIIGDTSS DYLWCIDPLDGTTNFAHCYPSFAVSVGVLFRGNPAAASVVEFVGGPMCWNTRTFSATA GGGAFCNGQKIHPSHTDKVEQSLLVTGFGYEHDDAWITNIELFKEFTDISRGVRRLGA AAVDMCHVALGVAEAYWEYCLKPWDMAAGVLIVEEAGGAVTRMDGGKFCVFDRSVLVS NGALHAKLLERIAPATEKLKNKGIDFSLWYKPENYLTDL" CDS complement(join(22347726..22347824,22347952..22348053, 22348470..22348583,22348696..22348794,22349185..22349237, 22349328..22349385,22349551..22349639,22349900..22350033, 22350818..22350885,22350992..22351297)) /locus_tag="TCM_029385" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Myo-inositol monophosphatase like 1 isoform 1" /protein_id="EOY27546.1" /db_xref="Phytozome:POPTR_0012s12120.1" /db_xref="TAIR:AT1G31190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94F00" /translation="MGRSLVFSTNIPLRFSQTPRSISPRVHPNQYQPYKFTANSPLGH QKVGFLSTNSTRKLCTGALLSEVSNQRQYPKVGAKSTGPIPPSQLIEVVETAAKAGAE VVMDAVNKPRNITYKGLTDLVTDTDKMSEAAILEVVKRNFGDHLILGEEGGIIGDTSS DYLWCIDPLDGTTNFAHCYPSFAVSVGVLFRGNPAAASVVEFVGGPMCWNTRTFSATA GGGAFCNGQKIHPSHTDKVEQSLLVTGFGYEHDDAWITNIELFKEFTDISRGVRRLGA AAVDMCHVALGVAEAYWEYCLKPWDMAAGVLIVEEAGGAVTRMDGGKFCVFDRSVLVS NGALHAKLLERIAPATEKLKNKGIDFSLWYKPENYLTDL" CDS complement(join(22347726..22347824,22347952..22348053, 22348470..22348583,22348696..22348794,22349185..22349237, 22349328..22349385,22349551..22349639,22349900..22350033, 22350818..22350885,22350992..22351297)) /locus_tag="TCM_029385" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Myo-inositol monophosphatase like 1 isoform 1" /protein_id="EOY27547.1" /db_xref="Phytozome:POPTR_0012s12120.1" /db_xref="TAIR:AT1G31190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94F00" /translation="MGRSLVFSTNIPLRFSQTPRSISPRVHPNQYQPYKFTANSPLGH QKVGFLSTNSTRKLCTGALLSEVSNQRQYPKVGAKSTGPIPPSQLIEVVETAAKAGAE VVMDAVNKPRNITYKGLTDLVTDTDKMSEAAILEVVKRNFGDHLILGEEGGIIGDTSS DYLWCIDPLDGTTNFAHCYPSFAVSVGVLFRGNPAAASVVEFVGGPMCWNTRTFSATA GGGAFCNGQKIHPSHTDKVEQSLLVTGFGYEHDDAWITNIELFKEFTDISRGVRRLGA AAVDMCHVALGVAEAYWEYCLKPWDMAAGVLIVEEAGGAVTRMDGGKFCVFDRSVLVS NGALHAKLLERIAPATEKLKNKGIDFSLWYKPENYLTDL" CDS complement(join(22347726..22347824,22347952..22348053, 22348470..22348583,22348696..22348794,22349185..22349237, 22349328..22349385,22349551..22349639,22349900..22350033, 22350818..22350885,22350992..22351297)) /locus_tag="TCM_029385" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Myo-inositol monophosphatase like 1 isoform 1" /protein_id="EOY27548.1" /db_xref="Phytozome:POPTR_0012s12120.1" /db_xref="TAIR:AT1G31190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94F00" /translation="MGRSLVFSTNIPLRFSQTPRSISPRVHPNQYQPYKFTANSPLGH QKVGFLSTNSTRKLCTGALLSEVSNQRQYPKVGAKSTGPIPPSQLIEVVETAAKAGAE VVMDAVNKPRNITYKGLTDLVTDTDKMSEAAILEVVKRNFGDHLILGEEGGIIGDTSS DYLWCIDPLDGTTNFAHCYPSFAVSVGVLFRGNPAAASVVEFVGGPMCWNTRTFSATA GGGAFCNGQKIHPSHTDKVEQSLLVTGFGYEHDDAWITNIELFKEFTDISRGVRRLGA AAVDMCHVALGVAEAYWEYCLKPWDMAAGVLIVEEAGGAVTRMDGGKFCVFDRSVLVS NGALHAKLLERIAPATEKLKNKGIDFSLWYKPENYLTDL" CDS complement(join(22348026..22348049,22348470..22348583, 22348696..22348794,22349185..22349237,22349328..22349385, 22349551..22349639,22349900..22350033,22350818..22350885, 22350992..22351297)) /locus_tag="TCM_029385" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Myo-inositol monophosphatase like 1 isoform 2" /protein_id="EOY27545.1" /db_xref="Phytozome:POPTR_0012s12120.1" /db_xref="TAIR:AT1G31190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94F00" /translation="MGRSLVFSTNIPLRFSQTPRSISPRVHPNQYQPYKFTANSPLGH QKVGFLSTNSTRKLCTGALLSEVSNQRQYPKVGAKSTGPIPPSQLIEVVETAAKAGAE VVMDAVNKPRNITYKGLTDLVTDTDKMSEAAILEVVKRNFGDHLILGEEGGIIGDTSS DYLWCIDPLDGTTNFAHCYPSFAVSVGVLFRGNPAAASVVEFVGGPMCWNTRTFSATA GGGAFCNGQKIHPSHTDKVEQSLLVTGFGYEHDDAWITNIELFKEFTDISRGVRRLGA AAVDMCHVALGVAEAYWEYCLKPWDMAAGVLLKKLVVQ" gene complement(22351905..22358468) /locus_tag="TCM_029386" /note="dbxref CacaoGD:Thecc1EG029386" mRNA complement(join(22351905..22352494,22353943..22354200, 22354633..22354686,22354870..22354924,22355048..22355205, 22355441..22355623,22356253..22356353,22356450..22356501, 22356668..22356803,22356930..22357048,22357295..22357386, 22357684..22358468)) /locus_tag="TCM_029386" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s12220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025110t1" /inference="similar to AA sequence:ricco:30060.m000520" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc243t3" CDS complement(join(22352345..22352494,22353943..22354200, 22354633..22354686,22354870..22354924,22355048..22355205, 22355441..22355623,22356253..22356353,22356450..22356501, 22356668..22356803,22356930..22357048,22357295..22357386, 22357684..22357924)) /locus_tag="TCM_029386" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30060.m000520; paralog of Thecc1EG025110t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY27549.1" /db_xref="TAIR:AT4G19860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q71N54" /translation="MAMLLEDIVQSVEMWLKLMRKPQPYVDPDLDPVLLVPGIAGSIL NAVDGQNGKEERVWVRILGADYKLRTKLWSRFDPSTGRTVSLDPSTSITVPEERYGLY AIDVLDPDMIIGRECVYYFHDMIVEMIKWGFQEGKTLFGFGYDFRQSNRLQETLDRLA AKLESVYKASGGKKINIISHSMGGLLIKCFMALHSDIFEKYVKNWIAIAAPFRGAPGY IASTFLNGMSFVDGWEQNFFISKWSMHQLLIECPSIYELMACPHFHWQHIPLLEIWRE KQDPDGYPRIILESYHPGESIDIFKEALSGNSVDYDGEIVPLPFNLEILKWAKETQKV LSHAKVPSGVKFYNIYGINLETPHSVCYGSEETPVTHLQELPFFQPTYVCVDGDGTVP AESAKADGLHAEARVGVPGEHRGILCEPHVFRILKHWLKAGAPDPFYNPINDYVILPT AFEMESHQEKGLQVTSLKEEWEIVSEEQDNLDDFLVGVAVLLLHFSWGKQLAVEQHMD LGLEGDRIEAEEDTLALAPLEDMK" mRNA complement(join(22353223..22354040,22354161..22354200, 22354633..22354686,22354870..22354924,22355048..22355205, 22355441..22355623,22356253..22356353,22356450..22356501, 22356668..22356803,22356930..22357048,22357295..22357386, 22357684..22358249)) /locus_tag="TCM_029386" /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s12220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025110t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s15420.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc243t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc243t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc242t8" CDS complement(join(22353781..22354040,22354161..22354200, 22354633..22354686,22354870..22354924,22355048..22355205, 22355441..22355623,22356253..22356353,22356450..22356501, 22356668..22356803,22356930..22357048,22357295..22357386, 22357684..22357924)) /locus_tag="TCM_029386" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025110t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /protein_id="EOY27550.1" /db_xref="Phytozome:POPTR_0015s15420.1" /db_xref="TAIR:AT4G19860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q71N54" /translation="MAMLLEDIVQSVEMWLKLMRKPQPYVDPDLDPVLLVPGIAGSIL NAVDGQNGKEERVWVRILGADYKLRTKLWSRFDPSTGRTVSLDPSTSITVPEERYGLY AIDVLDPDMIIGRECVYYFHDMIVEMIKWGFQEGKTLFGFGYDFRQSNRLQETLDRLA AKLESVYKASGGKKINIISHSMGGLLIKCFMALHSDIFEKYVKNWIAIAAPFRGAPGY IASTFLNGMSFVDGWEQNFFISKWSMHQLLIECPSIYELMACPHFHWQHIPLLEIWRE KQDPDGYPRIILESYHPGESIDIFKEALSGNSVDYDGEIVPLPFNLEILKWAKETQKV LSHAKVPSGVKFYNIYGINLETPHSVCYGSEETPVTHLQELPFFQPTYVCVDGDGTVP AESAKADGLHAEARVGVPAFEMESHQEKGLQVTSLKEEWEIVSEEQDNLDDVASRNPF VSSISVSQGGNQQSARSEAHATVIVHPQNEGKQHIELNAISVSIDA" gene 22360312..22362906 /locus_tag="TCM_029387" /note="dbxref CacaoGD:Thecc1EG029387" mRNA join(22360312..22360612,22360838..22360964, 22361685..22361779,22361871..22361902,22362326..22362389, 22362481..22362906) /locus_tag="TCM_029387" /product="Cytochrome c" /inference="alignment:exonerate-protein:2:frave:gene20045" /inference="similar to AA sequence:Phytozome:POPTR_0015s15410.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03487t00001" CDS join(22360553..22360612,22360838..22360964, 22361685..22361779,22361871..22361902,22362326..22362389, 22362481..22362621) /locus_tag="TCM_029387" /codon_start=1 /product="Cytochrome c" /protein_id="EOY27551.1" /db_xref="Phytozome:POPTR_0015s15410.1" /db_xref="TAIR:AT5G45040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NDA1" /translation="MEIVSAVSGCSNTARCFLVKGNANQGGPPLKLKQVGRVKLFKNL APPLIAAFVALSPICSTPALAQTVDIQRGATLFRQACIGCHDGGGNIIQPGATLFTKD LQRNGVDTEEEIYRVTYFGKGRMPGFGESCTPRGQCTFGPRLKEDEIKLLAEFVKLQA DQGWPNIASNDD" mobile_element complement(22366285..22367538) /note="source:CACAO_M_E24109_F106_scaffold_4 1 1292" /mobile_element_type="retrotransposon:LTR/Copia" gene 22372874..22377278 /locus_tag="TCM_029389" /note="dbxref CacaoGD:Thecc1EG029389" mRNA join(22372874..22373533,22375212..22375407, 22376737..22377278) /locus_tag="TCM_029389" /product="Uncharacterized protein" /note="quality class is strong-utrpoor, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02695t00001" CDS join(22373414..22373533,22375212..22375407, 22376737..22376786) /locus_tag="TCM_029389" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27552.1" /translation="MVHHQVILQLQSLTHQQKNFLASHGYLRFCSLSKVRPSFQLQSV TSQQKKYLRVASSLSKYITRSGSIQQFPLKYGHSYWTLKDAKGTQKFSDFMYLFQRRI SMEGLAGRQLLAKGRWRQF" gene complement(22379550..22386918) /locus_tag="TCM_029390" /note="dbxref CacaoGD:Thecc1EG029390" mRNA complement(join(22379550..22379830,22380241..22380730, 22381248..22381748,22382005..22382245,22384256..22384399, 22384789..22385295,22385489..22385552,22386361..22386918)) /locus_tag="TCM_029390" /product="Trypsin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s15390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032427t1" /inference="similar to AA sequence:ricco:30060.m000523" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5760t1" mRNA complement(join(22379688..22380730,22381248..22381748, 22382005..22382245,22384256..22384399,22384789..22385295, 22385489..22385552,22386361..22386528)) /locus_tag="TCM_029390" /product="Trypsin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s15390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032427t1" /inference="similar to AA sequence:ricco:30060.m000523" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5760t1; alternateUTRof:Thecc1EG029390t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5760t1" mRNA complement(join(22379805..22379830,22380173..22380730, 22381248..22381748,22382005..22382245,22384256..22384399, 22384789..22385295,22386361..22386578)) /locus_tag="TCM_029390" /product="Trypsin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s15390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032427t1" /inference="similar to AA sequence:ricco:30060.m000523" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc50t7; alternateUTRof:Thecc1EG029390t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5760t1" CDS complement(join(22380288..22380730,22381248..22381748, 22382005..22382245,22384256..22384399,22384789..22385283)) /locus_tag="TCM_029390" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30060.m000523; paralog of Thecc1EG032427t1" /codon_start=1 /product="Trypsin family protein isoform 1" /protein_id="EOY27553.1" /db_xref="TAIR:AT5G45030.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FL94" /translation="MERNRLDLRFHHSGSIESEESALDLERNCCNHFNLPSSSPSPLQ PFASGAQHSESNAAYFSWPTSSRLIDAAEDRANYFGNLQKGVLPETLGRLPSGQQATT LLELMTIRAFHSKKLRRFSLGTAIGFRIRRGVLTKIPAILVFVARKVHRQWLSQFQCL PAALEGPGGVWCDVDVVEFSYYGAPAATPKEQLYTELVDGLRGSDPIIGSGSQVASQE TYGTLGAIVKSRTGNRQVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERAT SFITDVLWYGIFAGINPETFVRADGAFIPFAEDFNMNNVTTTVKGVGEIGDVHIIDLQ SPISSLIGRQVVKVGRSSGLTTGTIMAYALEYNDEKGICFFTDFLVVGENQQTFDLEG DSGSLVLLTGRNREKPRPVGIIWGGTANRGRLKLKVGQPPENWTSGVDLGRLLDLLEL DLITTNVGLQAAVQDQRNVSAAGIDSTVVESSPLVQTLSKDKIEENFGPINLNIQQVL AEGESQQGVTLPIMHNEYRAEDRVKAAPNLEHQFIPSFNGTSRVHDNNKRENPESRNL SALRNGSDEEIYVSLQLGEPEPKRRKHSDSLRSIRESEVKE" CDS complement(join(22380288..22380730,22381248..22381748, 22382005..22382245,22384256..22384399,22384789..22385283)) /locus_tag="TCM_029390" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30060.m000523; paralog of Thecc1EG032427t1" /codon_start=1 /product="Trypsin family protein isoform 1" /protein_id="EOY27554.1" /db_xref="TAIR:AT5G45030.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FL94" /translation="MERNRLDLRFHHSGSIESEESALDLERNCCNHFNLPSSSPSPLQ PFASGAQHSESNAAYFSWPTSSRLIDAAEDRANYFGNLQKGVLPETLGRLPSGQQATT LLELMTIRAFHSKKLRRFSLGTAIGFRIRRGVLTKIPAILVFVARKVHRQWLSQFQCL PAALEGPGGVWCDVDVVEFSYYGAPAATPKEQLYTELVDGLRGSDPIIGSGSQVASQE TYGTLGAIVKSRTGNRQVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERAT SFITDVLWYGIFAGINPETFVRADGAFIPFAEDFNMNNVTTTVKGVGEIGDVHIIDLQ SPISSLIGRQVVKVGRSSGLTTGTIMAYALEYNDEKGICFFTDFLVVGENQQTFDLEG DSGSLVLLTGRNREKPRPVGIIWGGTANRGRLKLKVGQPPENWTSGVDLGRLLDLLEL DLITTNVGLQAAVQDQRNVSAAGIDSTVVESSPLVQTLSKDKIEENFGPINLNIQQVL AEGESQQGVTLPIMHNEYRAEDRVKAAPNLEHQFIPSFNGTSRVHDNNKRENPESRNL SALRNGSDEEIYVSLQLGEPEPKRRKHSDSLRSIRESEVKE" CDS complement(join(22380288..22380730,22381248..22381748, 22382005..22382245,22384256..22384399,22384789..22385283)) /locus_tag="TCM_029390" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30060.m000523; paralog of Thecc1EG032427t1" /codon_start=1 /product="Trypsin family protein isoform 1" /protein_id="EOY27555.1" /db_xref="TAIR:AT5G45030.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FL94" /translation="MERNRLDLRFHHSGSIESEESALDLERNCCNHFNLPSSSPSPLQ PFASGAQHSESNAAYFSWPTSSRLIDAAEDRANYFGNLQKGVLPETLGRLPSGQQATT LLELMTIRAFHSKKLRRFSLGTAIGFRIRRGVLTKIPAILVFVARKVHRQWLSQFQCL PAALEGPGGVWCDVDVVEFSYYGAPAATPKEQLYTELVDGLRGSDPIIGSGSQVASQE TYGTLGAIVKSRTGNRQVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERAT SFITDVLWYGIFAGINPETFVRADGAFIPFAEDFNMNNVTTTVKGVGEIGDVHIIDLQ SPISSLIGRQVVKVGRSSGLTTGTIMAYALEYNDEKGICFFTDFLVVGENQQTFDLEG DSGSLVLLTGRNREKPRPVGIIWGGTANRGRLKLKVGQPPENWTSGVDLGRLLDLLEL DLITTNVGLQAAVQDQRNVSAAGIDSTVVESSPLVQTLSKDKIEENFGPINLNIQQVL AEGESQQGVTLPIMHNEYRAEDRVKAAPNLEHQFIPSFNGTSRVHDNNKRENPESRNL SALRNGSDEEIYVSLQLGEPEPKRRKHSDSLRSIRESEVKE" mRNA complement(join(<22380559..22380730,22381248..22381748, 22382005..22382245,22384256..22384399,22384789..22386080)) /locus_tag="TCM_029390" /product="Trypsin family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s15390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032427t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s15390.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc46t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5760t1" CDS complement(join(<22380561..22380730,22381248..22381748, 22382005..22382245,22384256..22384399,22384789..22385283)) /locus_tag="TCM_029390" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG032427t1" /codon_start=1 /product="Trypsin family protein isoform 4" /protein_id="EOY27556.1" /db_xref="Phytozome:POPTR_0015s15390.1" /db_xref="TAIR:AT5G45030.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FL94" /translation="MERNRLDLRFHHSGSIESEESALDLERNCCNHFNLPSSSPSPLQ PFASGAQHSESNAAYFSWPTSSRLIDAAEDRANYFGNLQKGVLPETLGRLPSGQQATT LLELMTIRAFHSKKLRRFSLGTAIGFRIRRGVLTKIPAILVFVARKVHRQWLSQFQCL PAALEGPGGVWCDVDVVEFSYYGAPAATPKEQLYTELVDGLRGSDPIIGSGSQVASQE TYGTLGAIVKSRTGNRQVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERAT SFITDVLWYGIFAGINPETFVRADGAFIPFAEDFNMNNVTTTVKGVGEIGDVHIIDLQ SPISSLIGRQVVKVGRSSGLTTGTIMAYALEYNDEKGICFFTDFLVVGENQQTFDLEG DSGSLVLLTGRNREKPRPVGIIWGGTANRGRLKLKVGQPPENWTSGVDLGRLLDLLEL DLITTNVGLQAAVQDQRNVSAAGIDSTVVESSPLVQTLSKDKIEENFGPINLNIQQVL AEGESQQGV" gene 22389499..22389972 /locus_tag="TCM_029391" /note="dbxref CacaoGD:Thecc1EG029391" mRNA 22389499..22389972 /locus_tag="TCM_029391" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s15380.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s15380.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc628t2_C1" CDS 22389506..22389781 /locus_tag="TCM_029391" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27557.1" /db_xref="Phytozome:POPTR_0015s15380.1" /db_xref="TAIR:AT1G31175.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7KKA0" /translation="MGEAGGDSTGCERLQKALCECHQRFGPGATRDAACRHLNRALAE CLVSVLCPAESEAVRTLCASGGTRLKRSQCQEAQLSLSVCISSHQQD" gene complement(22391100..22402875) /locus_tag="TCM_029392" /note="dbxref CacaoGD:Thecc1EG029392" mRNA complement(join(22391100..22391765,22391964..22392092, 22392209..22392433,22392541..22392717,22401774..22401998, 22402819..22402875)) /locus_tag="TCM_029392" /product="Glutathione S-transferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400018246" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046844t1" /inference="similar to AA sequence:ricco:30060.m000541" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01724t00001; inference alignment:Newbler:10:TSA:cgbaP2_g01724t00001" mRNA complement(join(22391216..22391765,22391964..22392092, 22392209..22392433,22392541..22392717,22392809..22393033, 22393854..22393906)) /locus_tag="TCM_029392" /product="Glutathione S-transferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400018246" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046844t1" /inference="similar to AA sequence:ricco:30060.m000541" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01300t00001; inference alignment:Newbler:10:TSA:cgbaL_g01300t00001; inference alignment:Newbler:10:TSA:cgbaP2_g01724t00001" mRNA complement(join(22391345..22391765,22391964..22392092, 22392209..22392433,22392541..22392717,22392809..22393033, 22402819..22402875)) /locus_tag="TCM_029392" /product="Glutathione S-transferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400018246" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046844t1" /inference="similar to AA sequence:ricco:30060.m000541" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03648t00001; alternateUTRof:Thecc1EG029392t2; inference alignment:Newbler:10:TSA:cgbaL_g01300t00001; inference alignment:Newbler:10:TSA:cgbaP2_g01724t00001" CDS complement(join(22391532..22391765,22391964..22392092, 22392209..22392433,22392541..22392717,22401774..22401986)) /locus_tag="TCM_029392" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30060.m000541; paralog of Thecc1EG046844t1" /codon_start=1 /product="Glutathione S-transferase family protein isoform 1" /protein_id="EOY27558.1" /db_xref="TAIR:AT4G19880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H121" /translation="MAQSALDEMSDSGAFMRTASTFRNIISRDPNSRFPPESGRYHLY VSYACPWASRCLAYLKIKGLDKAISFTSVKPIWERTKETDEHMGWVFPTSNTEEPDAE PDPFNGAKSIRKLYELASTNYTGKYTVPVLWDKKFKTIVSNESAEIIRMLNTEFNDIA ENPALDLYPSHLRAQIDETNEWIYSGINNGVYKCGFARQQGPYDEAVKQLYEALDKCE EILSKQRYICGNVLTEADVRLFVTLIRFDEVYAVHFKCNKKLLREYPNLFNYTKEIYQ IPGISSTVNVQHIKKHYYGSQPSINPFGIIPLGPNIDYSSPHDRARFSA" CDS complement(join(22391532..22391765,22391964..22392092, 22392209..22392433,22392541..22392717,22392809..22393021)) /locus_tag="TCM_029392" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30060.m000541; paralog of Thecc1EG046844t1" /codon_start=1 /product="Glutathione S-transferase family protein isoform 2" /protein_id="EOY27559.1" /db_xref="TAIR:AT4G19880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H121" /translation="MARSALDEMSDSGAFMRTASTFRNIISRDPNSRFPPESGRYHLY VSYACPWASRCLAYLKIKGLAKAISFTSVKPIWERTKETDEHMGWVFPTSNTEEPDAE PDPFNGAKSIRKLYELASTNYTGKYTVPVLWDKKFKTIVSNESAEIIRMLNTEFNDIA ENPALDLYPSHLRAQIDETNEWIYSGINNGVYKCGFARQQGPYDEAVKQLYEALDKCE EILSKQRYICGNVLTEADVRLFVTLIRFDEVYAVHFKCNKKLLREYPNLFNYTKEIYQ IPGISSTVNVQHIKKHYYGSQPSINPFGIIPLGPNIDYSSPHDRARFSA" CDS complement(join(22391532..22391765,22391964..22392092, 22392209..22392433,22392541..22392717,22392809..22393021)) /locus_tag="TCM_029392" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30060.m000541; paralog of Thecc1EG046844t1" /codon_start=1 /product="Glutathione S-transferase family protein isoform 2" /protein_id="EOY27560.1" /db_xref="TAIR:AT4G19880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H121" /translation="MARSALDEMSDSGAFMRTASTFRNIISRDPNSRFPPESGRYHLY VSYACPWASRCLAYLKIKGLAKAISFTSVKPIWERTKETDEHMGWVFPTSNTEEPDAE PDPFNGAKSIRKLYELASTNYTGKYTVPVLWDKKFKTIVSNESAEIIRMLNTEFNDIA ENPALDLYPSHLRAQIDETNEWIYSGINNGVYKCGFARQQGPYDEAVKQLYEALDKCE EILSKQRYICGNVLTEADVRLFVTLIRFDEVYAVHFKCNKKLLREYPNLFNYTKEIYQ IPGISSTVNVQHIKKHYYGSQPSINPFGIIPLGPNIDYSSPHDRARFSA" gene complement(22394250..22399594) /locus_tag="TCM_029394" /note="dbxref CacaoGD:Thecc1EG029394" mRNA complement(join(22394250..22397084,22399303..22399594)) /locus_tag="TCM_029394" /product="Pentatricopeptide repeat (PPR-like) superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30008.m000823" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029395t1" /inference="similar to AA sequence:ricco:30008.m000823" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc528t11" CDS complement(22394898..22396976) /locus_tag="TCM_029394" /note="dbxref ricco:30008.m000823; paralog of Thecc1EG029395t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR-like) superfamily protein" /protein_id="EOY27561.1" /db_xref="TAIR:AT4G19890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICN8" /translation="MILRFHGIKPRLSTNPLFTLNPSYLHFDTNFIDTQSPTPSSEPQ SFIKTICSQVYESYHQQAHLRFSPPKLTLNINPYCLTHEQAISIVASLENEAGSMVAL SFFHWVLEISKFRLFMRLYIVTATSLIKNGNFDKANEVMQCLVRSFAEVGRLKEAVEM VFEMQNHGLKPKAETLNCILGVGFEMGLMDYLEKVFDEMSERGVCGDCSSYKLMVVGY CRMGMVSEVVKWLTEMLGRGFIVDNATCTLVISLFCEKGFASRASWYFDKMVKMGFKP NLINYSCLINGLCKRGSIKQAFGKLEDMVRAGWKPNVYIHTALIDGLCRKGWTEKAFR LFLKLVRSDNYKLNVLTYTSMISGYCKEEKLNRAEMLLSRMKEQGLVPNTNTYTTLID GHCKVGNFDRAYEFMDVMDKEGFAPNICTYNAIIGGLCKKGRVEEAHELLRDGLLHGL QADRVTYTILITEHCKQADTGRVLAFFCKTVKVGLQPDMHSYNTLIASFCKQKKMKES ENLFEEALRLGLVPTKETYTSMICGYSRDGNVSLGLKFFSKMNDHGCVPDSIAYGTVI SGLCKESRLEEACQLYETMMDRGLSPCEVTRLTIAYEYCKKGDSAVAMVMLERLEKKL WMRTVNTLIRKLCSEKKVGIAALFFHRLLDKDRNVDRVTLAAFMTACYETDKFALVSD LNERISKGIG" mobile_element 22397445..22397879 /note="source:CACAO_Mariner_E220_scaffold_9 14773 15247" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 22397805..22397969 /note="source:scaffold_7_CACTA_0779 12612 12770" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22397806..22397907) /note="source:scaffold_4_CACTA_0505 10623 10726" /mobile_element_type="transposon:TIR/CACTA" gene complement(22400050..22402939) /locus_tag="TCM_046844" /note="dbxref CacaoGD:Thecc1EG046844" mRNA complement(join(22400050..22400727,22400927..22401055, 22401173..22401397,22401506..22401682,22401774..22401998, 22402819..22402939)) /locus_tag="TCM_046844" /product="Glutathione S-transferase family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400018246.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029392t1" /inference="similar to AA sequence:ricco:30060.m000541" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03003t00001; inference alignment:Newbler:10:TSA:cgbaP2_g01724t00001" CDS complement(join(22400494..22400727,22400927..22401055, 22401173..22401397,22401506..22401682,22401774..22401998, 22402819..22402896)) /locus_tag="TCM_046844" /note="dbxref ricco:30060.m000541; paralog of Thecc1EG029392t1" /codon_start=1 /product="Glutathione S-transferase family protein" /protein_id="EOY27562.1" /db_xref="TAIR:AT4G19880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H121" /translation="MLTLLCRTPSALGVNNSSSLPFFAFKRTFQMAQSALDEMSDSGA FMRTASTFRNIISRDPNSRFPPESGRYHLYVSYACPWASRCLAYLKIKGLDKAISFTS VKPIWERTKETDEHMGWVFPTSITEEPGAEPDPFNGAKSIRELYELASTNYTGKYTVP VLWDKKFKTIVSNESAEIIRMLNTEFNDIAENPALDLYPPHLRAQIDETNEWIYSGIN NGVYKCGFARKQGPYDEAVKQLYEALDKCEKILSKQRYICGNILTEADVRLFVTLIRF DEVYAVNFKCNKKLLREYPNLFNYTKDIYQIPGISGTVNVEHIKKTYYGSHPSINPSG IIPLGPNIDYSSPHDRARFSA" gene complement(22402956..22407209) /locus_tag="TCM_029395" /note="dbxref CacaoGD:Thecc1EG029395" mRNA complement(join(22402956..22406047,22407058..22407209)) /locus_tag="TCM_029395" /product="Pentatricopeptide repeat superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30008.m000823.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029394t1" /inference="similar to AA sequence:ricco:30008.m000823" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.17 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5792t1" CDS complement(join(22403861..22406047,22407058..22407087)) /locus_tag="TCM_029395" /note="dbxref ricco:30008.m000823; paralog of Thecc1EG029394t1" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein" /protein_id="EOY27563.1" /db_xref="TAIR:AT4G19890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICN8" /translation="MLYNDVLMSSSTTSVLNCKLRSPANTTIIYFLFFYFFISILLRH LSMILRYHGIKPRLWTNPLFTLNPSYLHFDTNFIDTQSPTPSSEPQSFIKTICSQVYE SYHQQAHLRFSPPKLTLNINPYCLTHEQAISIVASLANEAGSMVALSFFHWVLEISKF RLFIRLYIVTATSLIKNGNFDKANEVMQCLVRSFAKVGRLKEAVEMVFEMQNHGLKPK AETLNCILGVGFEMGLLDYLEKVFDEMSERGVCGDCSSYKLMVVGYCRMGMVSEVDKW LTEMLGRGFIVDNATCTLVISLFCEKGFASRASWYFDKMVKMGFKPNLINYSCLINGL CKRGSIKQAFGKLEDMVRAGWKPNVYIHTALIDGLCRKGWTEKAFRLFLKLVRSDNYK LNVHTYTSMISGYCKEEKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKVGNFDRAY EFMDVMDKEGFAPNICTYNAIIGGLCKKGRVEEAHELLRDGLLHGLQADRVTYTILIT EHCKQADTGRVLAFFCKMVKGGLQPDMHSYNTLIASFCKQKKMKESENLFEEALRLGL VPTKETYTSMICGYSRDGNVSLGLKFFSKMNDHGCVPDSIAYGTVISGLCKESRLEEA CQLYETMMDRGLSPCEVTRLTIAYEYCKKGDSAVAMVMLERLEKKLWMRTVNTLIRKL CSEKKVGIAALFFHRLLDKDRNVDRVTLAAFMTACYETDKFALVSDLNERISKGIG" gene 22409119..22410894 /locus_tag="TCM_029396" /note="dbxref CacaoGD:Thecc1EG029396" mRNA 22409119..22410894 /locus_tag="TCM_029396" /product="EXORDIUM like 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s15330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007565t3" /inference="similar to AA sequence:frave:gene20038" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07772t00001" CDS 22409366..22410367 /locus_tag="TCM_029396" /note="dbxref frave:gene20038; paralog of Thecc1EG007565t3" /codon_start=1 /product="EXORDIUM like 1" /protein_id="EOY27564.1" /db_xref="TAIR:AT2G35150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SII5" /translation="MHKLSWYVLLLSLLYFPLALSWSQDTQFNQAENYEGSSDLVNLE YHMGPVLASPTNLYIIWYGHWNPTHQATIRDFLYSLSSSAPYPSVADWWKTVRLYTDQ TGSNITGSISLSGEFYDYRYSHGGYLSRLSMQSIIKTAVTSYPRPLPLNPRNGLYLVL TSSDVQVQDFCRAVCGFHYFTFPTIVGVTMPYAWIGYSGTQCPGMCAYPFAWPNYSGK PPPSTNGGNNIMRAPNGDAGVDGMISIIAHELAEVSSNPLVNAWYAGDDPTAPTEIAD LCLGLYGSGGGGGYVGKVYKDSWGNGYNVNGVKGRRFLVQWVWNPVKRRCFGPNAMD" gene complement(22410896..22415857) /locus_tag="TCM_029397" /note="dbxref CacaoGD:Thecc1EG029397" mRNA complement(join(22410896..22411398,22412195..22412371, 22413009..22413143,22413755..22413904,22413977..22415857)) /locus_tag="TCM_029397" /product="Alpha 1,4-glycosyltransferase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012068001" /inference="similar to AA sequence:TAIR:AT4G19900.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Newbler:10:TSA:cgbaL_g04396t00001" CDS complement(join(22411212..22411398,22412195..22412371, 22413009..22413143,22413755..22413904,22413977..22415295)) /locus_tag="TCM_029397" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Alpha 1,4-glycosyltransferase family protein, putative isoform 1" /protein_id="EOY27565.1" /db_xref="TAIR:AT4G19900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P0C8Q4" /translation="MLRNLQSRRRPRYGAQVCAAISALLLLFSVSLLYSRLSLSSKPH IYPHHSSIDKNDDVAFPNNPLLSDSDDDVSTTNDDKIDEFDTLEDNDTVLTEDDNNNN EIEQEEEQEITTMNQKNKIFSSGHFYFDHLSGSIKRASNKRSIEDWDYDGGFLNEGFL GEDAKIKIAFGSDDIPLDEEVRRKMSEVEGVEDALLVKKVGGKKANPLREKWGDWFDK KGDFLRRDRMFKSNLEVLNPLNNPLLQDPDGVGVTGLTRGDRIVQKWILSEFKKVPFT GKKPLGILEKGSEDKKGGEGKKNDNARNVLSKRENSIKDSGSNTNGNKTNESNSRKNE VKNGGLEADKMNTEFSGHIYADGKRWGYYPGLDSRLSFSDFMDAFLRKGKCDMRVFMI WNSPPWMYSVRHQRGLESLLAQHRDACVILFSETIELDFFKESFVKDGYKVAVAMPNL DELLKDTFTHAFASVWFEWRKTKFYAIHYSELVRLAALYKYGGIYLDADIIVLKPLLA LNNSIGLEDQLAGSSLNGALMAFRKQSPFIMECLKEFYLTYDDTQLRWNGADLLSRVA KRFLNNQRELNVWPSFVFFPISSQHITRYFVAPTTETDKAQQDTLFQKILAESVTFHF WNSLTSALIPEPESLVTRLIDYHCIHCFDVL" mRNA complement(join(22412344..22412540,22413009..22413143, 22413755..22413904,22413977..22415487)) /locus_tag="TCM_029397" /product="Alpha 1,4-glycosyltransferase family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012068001" /inference="similar to AA sequence:TAIR:AT4G19900.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1125t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1134t3; inference alignment:Newbler:10:TSA:cgbaL_g04396t00001" mRNA complement(join(22412511..22412534,22413009..22413143, 22413755..22413904,22413977..22415357)) /locus_tag="TCM_029397" /product="Alpha 1,4-glycosyltransferase family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012068001" /inference="similar to AA sequence:TAIR:AT4G19900.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1134t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1134t3; inference alignment:Newbler:10:TSA:cgbaL_g04396t00001" CDS complement(join(22412519..22412534,22413009..22413143, 22413755..22413904,22413977..22415295)) /locus_tag="TCM_029397" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Alpha 1,4-glycosyltransferase family protein, putative isoform 3" /protein_id="EOY27567.1" /db_xref="TAIR:AT4G19900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P0C8Q4" /translation="MLRNLQSRRRPRYGAQVCAAISALLLLFSVSLLYSRLSLSSKPH IYPHHSSIDKNDDVAFPNNPLLSDSDDDVSTTNDDKIDEFDTLEDNDTVLTEDDNNNN EIEQEEEQEITTMNQKNKIFSSGHFYFDHLSGSIKRASNKRSIEDWDYDGGFLNEGFL GEDAKIKIAFGSDDIPLDEEVRRKMSEVEGVEDALLVKKVGGKKANPLREKWGDWFDK KGDFLRRDRMFKSNLEVLNPLNNPLLQDPDGVGVTGLTRGDRIVQKWILSEFKKVPFT GKKPLGILEKGSEDKKGGEGKKNDNARNVLSKRENSIKDSGSNTNGNKTNESNSRKNE VKNGGLEADKMNTEFSGHIYADGKRWGYYPGLDSRLSFSDFMDAFLRKGKCDMRVFMI WNSPPWMYSVRHQRGLESLLAQHRDACVILFSETIELDFFKESFVKDGYKVAVAMPNL DELLKDTFTHAFASVWFEWRKTKFYAIHYSELVRLAALYKYGGIYLDADIIVLKPLLA LNNSIGLEDQLAGSSLNGALMAFRKQRWKGL" CDS complement(join(22412519..22412540,22413009..22413143, 22413755..22413904,22413977..22415295)) /locus_tag="TCM_029397" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Alpha 1,4-glycosyltransferase family protein, putative isoform 2" /protein_id="EOY27566.1" /db_xref="TAIR:AT4G19900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P0C8Q4" /translation="MLRNLQSRRRPRYGAQVCAAISALLLLFSVSLLYSRLSLSSKPH IYPHHSSIDKNDDVAFPNNPLLSDSDDDVSTTNDDKIDEFDTLEDNDTVLTEDDNNNN EIEQEEEQEITTMNQKNKIFSSGHFYFDHLSGSIKRASNKRSIEDWDYDGGFLNEGFL GEDAKIKIAFGSDDIPLDEEVRRKMSEVEGVEDALLVKKVGGKKANPLREKWGDWFDK KGDFLRRDRMFKSNLEVLNPLNNPLLQDPDGVGVTGLTRGDRIVQKWILSEFKKVPFT GKKPLGILEKGSEDKKGGEGKKNDNARNVLSKRENSIKDSGSNTNGNKTNESNSRKNE VKNGGLEADKMNTEFSGHIYADGKRWGYYPGLDSRLSFSDFMDAFLRKGKCDMRVFMI WNSPPWMYSVRHQRGLESLLAQHRDACVILFSETIELDFFKESFVKDGYKVAVAMPNL DELLKDTFTHAFASVWFEWRKTKFYAIHYSELVRLAALYKYGGIYLDADIIVLKPLLA LNNSIGLEDQLAGSSLNGALMAFRKQSFRWKGL" gene complement(22415972..22421337) /locus_tag="TCM_029398" /note="dbxref CacaoGD:Thecc1EG029398" mRNA complement(join(22415972..22419325,22419430..22419546, 22419672..22419971,22420809..22420881,22420994..22421337)) /locus_tag="TCM_029398" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012068001" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; weak similarity to DCD (Development and Cell Death) domain protein; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc421t2" CDS complement(join(22416854..22419325,22419430..22419546, 22419672..22419953)) /locus_tag="TCM_029398" /note="weak similarity to DCD (Development and Cell Death) domain protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27568.1" /db_xref="TAIR:AT2G35140.3" /translation="MDDAEQNSVFGSCPEFGAIFISNNSTKKECLRRKIFALPSSQYH FVKQVKAGMILFLFEFERRELHGVFQACSDGAMNILPHAFSSSGKEFPAQVKVNPMWN CLPLSENEFRDAIRENYFSRYKFNFGLSEDQVRRLLLLFSFKRLKDQAPQRQLPRSKV AARPSVYSTRKLRRVVDNDRSLMRNQVLGECDVDNNHRPVISTKHHGDSFYNDDRATD DGGFGTYMDVGDKHKASAFLNECFQDHMGKVGGNIDAGECTTNDGLEIERNTGIELQP EVSVGYSLCNFRSFSNDVRFAKSDRLETECYKDDGFASTISTTYPSSFQSKVNPHACP SKHVLEADSYVHDPTRPSSTFRPSMELQNPNVSYPRTYEDSIVTTALPYDPDVPSINY QGPSSLGFNQGHASFQEYSSHDSFVANVFGFSKNQSFPSLLETNTTITVDVNSGSMDF IPLPYSNQYEHSSRTSLPRHAYSDDIAAEYSKNECSDDVSFLKPSLAPVPSSEIRNNV RMSTQPSSYGTSLIKFPSLMFSSRYPTLLQARHDCQVPERENNAGFGNDVSMFKEYRH HGDSFYNENKAIEDGTFATYNYVECEHKEGQYPLHVHEPANIDYHEVSSLNPAAYQNS ECLYPDHRKKRGSVFSRLALPPKVCEQESNTSPGTADINRSTSVNEVMDMLHSSHKHW RKTRTKQLVQQHDNAASFRDKKQAAKKESLAMISKEMNLKPAPFSKENSSQKTEETTF VDFRRRRVVRKNLEDGKTGNHCESLENKSASASQSKRRKLIRPNFCENESFERGISGD APENLIPSSVGCSVSKNAESIKASVCHENEDDISQNVKLPNAMCQTAVEGNIDKGSDS NSEQFSMESLIALRSADEDGKESSQNHGISSMTSVSCGDMRKEIEQDLSNRDLGMDGL FQERNNVSHSNHESSPKICEDNDGSGVAKSELLHNIEQINDI" gene 22421862..22426371 /locus_tag="TCM_029400" /note="dbxref CacaoGD:Thecc1EG029400" mRNA join(22421862..22421878,22421974..22422056, 22422153..22422229,22422392..22422456,22422862..22422908, 22423768..22423843,22424058..22424125,22424565..22424634, 22424735..22424820,22425480..22425542,22425724..22425789, 22426078..22426371) /locus_tag="TCM_029400" /product="N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30169.m006319" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006639t1" /inference="similar to AA sequence:ricco:30169.m006319" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05585t00001; inference alignment:Newbler:10:TSA:cgbaP1_g05585t00001" CDS join(22422016..22422056,22422153..22422229, 22422392..22422456,22422862..22422908,22423768..22423843, 22424058..22424125,22424565..22424634,22424735..22424820, 22425480..22425542,22425724..22425789,22426078..22426126) /locus_tag="TCM_029400" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30169.m006319; paralog of Thecc1EG006639t1" /codon_start=1 /product="N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein isoform 1" /protein_id="EOY27569.1" /db_xref="TAIR:AT1G79210.3" /db_xref="UniProtKB/TrEMBL:UniRef50_P25787" /translation="MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGV VIATEKKLPSILVDEISVQKIQCLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYK EPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDNGPQLYQVDPSGSYFSWKA SAMGKNVSNAKTFLEKRYTDDMELDDAVHTAILTLKEGFEGQISGKNIEIGIIGTDKK FRVLTPAEIDDYLAEVE" mRNA join(<22422177..22422229,22422392..22422456, 22422862..22422920,22423768..22423843,22424058..22424125, 22424565..22424634,22424735..22424820,22425480..22425547, 22425732..22425789,22426078..22426207) /locus_tag="TCM_029400" /product="Proteasome subunit PAB1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30169.m006319" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001683t1" /inference="similar to AA sequence:ricco:30169.m006319" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc444t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc437t7; inference alignment:Newbler:10:TSA:cgbaP1_g05585t00001" mRNA join(<22422177..22422229,22422392..22422456, 22422862..22422920,22423768..22423843,22424058..22424125, 22424565..22424595,22424735..22424820,22425480..22425547, 22425732..22425789,22426078..22426207) /locus_tag="TCM_029400" /product="N-terminal nucleophile aminohydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30169.m006319" /inference="similar to AA sequence:ricco:30169.m006319" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc444t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc437t7; inference alignment:Newbler:10:TSA:cgbaP1_g05585t00001" CDS join(<22422178..22422229,22422392..22422456, 22422862..22422920,22423768..22423843,22424058..22424125, 22424565..22424634,22424735..22424820,22425480..22425546) /locus_tag="TCM_029400" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30169.m006319; paralog of Thecc1EG001683t1" /codon_start=1 /product="Proteasome subunit PAB1 isoform 2" /protein_id="EOY27570.1" /db_xref="TAIR:AT1G16470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P25787" /translation="EHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDEISVQKIQ CLTPNIGVVYRFGFIGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQE FTQSGGVRPFGVSLLVAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRY TDDMELDDAVHTAILTLKEG" CDS join(<22422178..22422229,22422392..22422456, 22422862..22422920,22423768..22423843,22424058..22424125, 22424565..22424595,22424735..22424820,22425480..22425546) /locus_tag="TCM_029400" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30169.m006319" /codon_start=1 /product="N-terminal nucleophile aminohydrolases superfamily protein isoform 3" /protein_id="EOY27571.1" /db_xref="TAIR:AT1G16470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P25787" /translation="EHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDEISVQKIQ CLTPNIGVVYRFGFIGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQE FTQSGGVRPFGVSLLVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELDDAVHTA ILTLKEG" mobile_element complement(22425105..22425162) /note="source:CACAO_PIF_E31_scaffold_2 268 325" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 22426584..22431273 /locus_tag="TCM_029401" /note="dbxref CacaoGD:Thecc1EG029401" mRNA join(22426584..22426796,22426909..22427081, 22427290..22427477,22427583..22427815,22428293..22428542, 22428786..22428931,22429105..22429310,22429559..22429683, 22430050..22431273) /locus_tag="TCM_029401" /product="Tetratricopeptide repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:ricco:28359.m000273" /inference="similar to AA sequence:ricco:28359.m000273" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5754t2" CDS join(22426734..22426796,22426909..22427081, 22427290..22427477,22427583..22427815,22428293..22428542, 22428786..22428931,22429105..22429310,22429559..22429683, 22430050..22430636) /locus_tag="TCM_029401" /note="dbxref ricco:28359.m000273" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein" /protein_id="EOY27572.1" /db_xref="TAIR:AT2G35130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82178" /translation="MKQFNFVQREANEVPHALTTVVFRKKKKKKKTGFLRVISQDIYK YLCLHYSRSLRHVIFSSKFSTLKLPNWNLLLFVFMLVAGNTLSQAYIVPRSYRPSFRL IAKNSSSDVAIEKWKRDGVYIDKRGKLRSFHHKKLSRKRCGSLRGQGWKYGSGFVDGI FPVLSPIAQQILDFVQEEVDANRVWGSLDNLSPTHNTWDDLINVAVQLRINKKWDPIV LICEWILHRSSFQLDVMCFNLLIDAYGKKSQYKKVESTYLELLEAQCIPTEDTYALLI KAYCSAGLKQKAEAVFAEMRKYGLPPSAIVYDAYIDGLIKGGNPQKAIEVFQRMKRDG CQLSTVTYTLMINLYGKASKSYMALKLFDEMRSQKCKPNICTYTALVNAFAREGLCEK AEEIFEQLQEAGHEPDVYAYNALMEAYSRAGYPYGAAEVFSLMQHMGCEPDRASFNIM VDAYGRAGLYQDAEAVFEEMKRLGITPTMKSHMLLLSAYSRVGNVAKCEDIVNQMHKS GLEPDTFVLNSMLNLYGRLGQFEIMENVLIAMEKGPYEADISTYNILINVYGRAGFFE RMEELFQLLPAKNLTPDVVTWTSRLGAYSRKKLYTRCLEIFEEMIDAGCNPDGGTAKV LLSACSSQDQIEQVTTVIRTMHKDMKTVLPIE" gene complement(22430933..22433347) /locus_tag="TCM_029402" /note="dbxref CacaoGD:Thecc1EG029402" mRNA complement(22430933..22433347) /locus_tag="TCM_029402" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene30400" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029403t1" /inference="similar to AA sequence:frave:gene30400" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16366t1" CDS complement(22431718..22433253) /locus_tag="TCM_029402" /note="dbxref frave:gene30400; paralog of Thecc1EG029403t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY27573.1" /db_xref="TAIR:AT1G30370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C8G6" /translation="MALSTMIHNHLPTALNTDVNRISAIRPHQEVVFHQPKASKASNR GARRLAESLSNLLHLHIEPPSRKNLQHSNWDLFFEEKHNTPTTSPKQMIADKWRDIHG SMDWVNLLDPLHPWLRREIVKYGEFAQATYDAFDFDSFSEFCGSCRYNRNKLFEKLGH GKNGYKVTKYIYAMSHIEMPQWLERSHLMDTWSKDSNWMGYVAVSDDEETRRIGRRDI VVAWRGTVAPAEWYEDFQRNLEPIGIGDAKVEHGFLSIYTSKNESTRYNKSSASEQVM EEVTKLVQFYQGNGEEVSLTITGHSLGGALALLNAYEAAASLPGLPVSVISFGAPRVG NSAFRDELDGLGVKTLRVVVKQDLVPRMPGIVFNESLQRFDDITGTLEWVYTHVGAEL RLDVSSSPYLKRGFSPLGFHSLETYLHLVDGFHSADSAFRSDARRDVSLVNKACDMLV DKLRIPHCWYQLSNKGLVRNEHGRWVKPRRDPEDIPSPIGEACDYALKIEGQESYQML YAS" mobile_element complement(22434468..22434534) /note="source:CACAO_Mariner_E38_scaffold_2 2204 2270" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 22434932..22435320 /note="source:CACAO_MITE_S164_scaffold_6 1 389" /mobile_element_type="transposon:TIR/MITE" mobile_element 22436122..22436900 /note="source:CACAO_Again_on_S_E199_scaffold_6 5 830" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22437383..22438066) /note="source:CACAO_on_E241_scaffold_112 281 1056" /mobile_element_type="transposon:TIR/hAT" gene 22439433..22441769 /locus_tag="TCM_029403" /note="dbxref CacaoGD:Thecc1EG029403" mRNA 22439433..22441769 /locus_tag="TCM_029403" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s06300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029402t1" /inference="similar to AA sequence:Phytozome:POPTR_0009s06300.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc842t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc3828t1" CDS 22439547..22441115 /locus_tag="TCM_029403" /note="paralog of Thecc1EG029402t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY27574.1" /db_xref="Phytozome:POPTR_0009s06300.1" /db_xref="TAIR:AT1G30370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C8G6" /translation="MENVELSPLRNVTRQKTEKPRTKRVWRLKLNVTWQGIKKAVKSV LRHRRLHLASNLKTLSTLKKDMAIIRPIRHAMKKKKTLRPMMPLGQLIQLPYTAADFI DRGDAMTPTKSPKENISTQWRELHGLQHWDGLVEPLHPWLRREIVKYGEFVEATYDAF DFDPLSEFCGSCRYNRRKFFEELGLTQHGYKVTKYIYAMSHVDVPEWFERSYYSWSKD SNWMGYVAVSGDAESARIGRRDILVAWRGTVAPSEWYTDLKTSLQPLGKTNIKVQLGF LSIYSSKGEFTRYNKLSASEQVMEEIKRLVSFFRDRGEEVSLTICGHSLGGALALLNA YDAATYFPDLFISVISFGAPRVGNVHFKEKLRELGVKTLRVVVKQDIVPKLPGFILNT ILNKLTTVTRRLKWIYRHVGTQLKLDALTSPYLRRDADYTGCHNLETYLHLVDGFISK TSKFRWNARRDVALVNKTTDMLIKELKIPDSWYQKPFKGLVLNKYGRWVKPGREPEHI PSPLSIGSRHDPIF" gene complement(22441941..22447687) /locus_tag="TCM_029404" /note="dbxref CacaoGD:Thecc1EG029404" mRNA complement(join(22441941..22442905,22443301..22443556, 22443947..22444791,22445050..22445325,22445551..22445699, 22446950..22447545)) /locus_tag="TCM_029404" /product="Early-responsive to dehydration stress protein (ERD4) isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s36870.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s36870.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5815t2" CDS complement(join(22442528..22442905,22443301..22443556, 22443947..22444791,22445050..22445325,22445551..22445699, 22446950..22447220)) /locus_tag="TCM_029404" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Early-responsive to dehydration stress protein (ERD4) isoform 1" /protein_id="EOY27575.1" /db_xref="Phytozome:POPTR_0001s36870.1" /db_xref="TAIR:AT1G30360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SYI4" /translation="MDFSSFLTSLGTSFIIFIVLMLLFAWISTRQGNAVVYYPNRILK GLEPWEGGSRTRNPFAWIREALSSSEQNVISMSGIDTAVYFVFLSTVLGILVLSGIVL LPALLPVAATDDGVKKHSKTASNVTFSDLDKLSMANIEEKSPRLWAFVITTYWVSVVT YFLSWKAYKHVSALRANALMSPEVKPEQFAVLVRDLPDVTQGQTRKEQVDSYFKSLYA ETFYRSMVVTNNKEVDKIWGELEGYKKKLAHAEAIYAESQKKGSSAGTRPTNKTGFLG LCGKKVDSIEYYTEKINELTQKLEAEQKVTLREKQQRSALVFFTSRVTAASAAQSLHA QMVDRWTVTEAPEPRQLVWSNLSIKFFERIIRQYIIYIVVFLTIVFFMIPIGFISALT TLANLKKYLPFLKPIVKLDAIRTVLEAYLPQLALIIFLALLPKFLLFLSKTEGIPSGS HVVRAASGKYFYFTVFNVFIGVTVGATLFSTFKSIEKDPNSIFDLLAKSLPGSATFFL TFVALKFFVGYGLELSRIVPLIIYHLKRKYLCKTEAELKEAWFPGDLGYATRFPGDML ILTIVLCYSVIAPVIIPFGVLYFALGWLILRNQALKVYVPAYESYGKMWPHMHTRVIG ALLLYQATMLGYFGVMKFYYTPILIPLPILSLIFAYVCRQKFYKAFSHTALEVACQEL KETPQMEQIFKSYIPPSLCSEKQEDEQFEDALSQASRTGSFV" mRNA complement(join(<22442800..22442895,22443286..22443552, 22443997..22444791,22445050..22445325,22445551..22445699, 22446950..22447687)) /locus_tag="TCM_029404" /product="Early-responsive to dehydration stress protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s36870.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s36870.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial3; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc469t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5815t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc469t6" CDS complement(join(<22442800..22442895,22443286..22443552, 22443997..22444791,22445050..22445325,22445551..22445699, 22446950..22447220)) /locus_tag="TCM_029404" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Early-responsive to dehydration stress protein isoform 2" /protein_id="EOY27576.1" /db_xref="Phytozome:POPTR_0001s36870.1" /db_xref="TAIR:AT1G30360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SYI4" /translation="MDFSSFLTSLGTSFIIFIVLMLLFAWISTRQGNAVVYYPNRILK GLEPWEGGSRTRNPFAWIREALSSSEQNVISMSGIDTAVYFVFLSTVLGILVLSGIVL LPALLPVAATDDGVKKHSKTASNVTFSDLDKLSMANIEEKSPRLWAFVITTYWVSVVT YFLSWKAYKHVSALRANALMSPEVKPEQFAVLVRDLPDVTQGQTRKEQVDSYFKSLYA ETFYRSMVVTNNKEVDKIWGELEGYKKKLAHAEAIYAESQKKGSSAGTRPTNKTGFLG LCGKKVDSIEYYTEKINELTQKLEAEQKVTLREKQQRSALVFFTSRVTAASAAQSLHA QMVDRWTVTEAPEPRQLVWSNLSIKFFERIIRQYIIYIVVFLTIVFFMIPIGFISALT TLANLKKYLPFLKPIVKLDAIRTVLEAYLPQLALIIFLALLPKFLLFLSKTEGIPSGS HVVRAASGKYFYFTVFNVFIGVTVGATLFSTFKSIEKDPNSIFDLLAFVGYGLELSRI VPLIIYHLKRKYLCKTEAELKEAWFPGDLGYATRFPGDMLILTIVLCYSVIAPVIIPF GVLYFALGWLILRNQVFLSIFMFQHMRATERCGLTCIHESSVPCCYTKLLCW" gene complement(22448301..22448937) /locus_tag="TCM_029405" /note="dbxref CacaoGD:Thecc1EG029405" mRNA complement(22448301..22448937) /locus_tag="TCM_029405" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" CDS complement(22448480..22448806) /locus_tag="TCM_029405" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27577.1" /translation="MFHSVALSLSPTNILNSYITAQVGGPHSPSGPPRSTLRPALLIK ENTSNRPTLPCLPPTTVKIYIPSTLSAAPTSRHVSYVEMKSVSHFFLPRVFSKLVKKA ISTRQE" mobile_element complement(22449449..22451463) /note="source:CACAO_on_E732_scaffold_9 1956 3962" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(22450090..22453617) /locus_tag="TCM_029406" /note="dbxref CacaoGD:Thecc1EG029406" mRNA complement(join(22450090..22451085,22451175..22451446, 22451944..22452053,22452144..22452432,22452532..22452757, 22452850..22453617)) /locus_tag="TCM_029406" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene20237.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014176t1" /inference="similar to AA sequence:frave:gene05726" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc5093t1_C1" CDS complement(join(22450960..22451085,22451175..22451446, 22451944..22452053,22452144..22452432,22452532..22452757, 22452850..22453377)) /locus_tag="TCM_029406" /note="dbxref frave:gene05726; paralog of Thecc1EG014176t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27578.1" /db_xref="TAIR:AT5G41980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BND9" /translation="MARLYLRRDAERQKRLLAMFKFYMEICRAVSSFLTLLSAASTLC TYRPRVRSYALDFATNREYVRRLVYDNDISCISQIRMNRVTFFKLCEMLESIGGLKST KNMLVDEQVAIFLHIIAHHVKNRVISLNFRKSGESISRHFHNVLAAVLKLQEYLFRKP EPIPTNSTDNRWKWFKNCLGALDGTYIRVKVPSADKPRYRTRKGDIATNMLGVCTLDM QFVFVLPGWEGSVADGRVLRDALRRRNGLKVPNGCYYLVDAGYSNCEGFLAPFRGQRY HLNEWRQGHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPEEFFNMKHAAA RNVIERCFGLLKMRREMSFDPIEVDLGEYVETNIAVDEDFISTIDPTDVWDLIDLHNI EKYNADTGFRGGYLIELENMLATKLPNANLKAKPHIESRIKTLKKKWAIIYDMVQGTH TSGFGWDDQRNMVVADDLVWEAYIQSHKEAAPFRRKSFPFFNELSIIYARDRATGKDA QTAADILE" mobile_element complement(22451564..22452228) /note="source:CACAO_on_E732_scaffold_9 1260 1925" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22452329..22453449) /note="source:CACAO_on_E732_scaffold_9 138 1258" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(22455435..22460588) /locus_tag="TCM_029407" /note="dbxref CacaoGD:Thecc1EG029407" mRNA complement(join(22455435..22456359,22456566..22456673, 22457088..22457261,22457426..22457554,22457832..22458122, 22458241..22458473,22459094..22460000,22460220..22460588)) /locus_tag="TCM_029407" /product="Galactosyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30059.m000456" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010069t1" /inference="similar to AA sequence:ricco:30059.m000456" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5813t1" mRNA complement(join(22455805..22456359,22456566..22456673, 22457068..22457261,22457426..22457554,22457832..22458122, 22458241..22458473,22459094..22460584)) /locus_tag="TCM_029407" /product="Galactosyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30059.m000456" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010069t1" /inference="similar to AA sequence:ricco:30059.m000456" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc697t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5813t1" CDS complement(join(22456153..22456359,22456566..22456673, 22457088..22457261,22457426..22457554,22457832..22458122, 22458241..22458473,22459094..22460000)) /locus_tag="TCM_029407" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30059.m000456; paralog of Thecc1EG010069t1" /codon_start=1 /product="Galactosyltransferase family protein isoform 1" /protein_id="EOY27579.1" /db_xref="TAIR:AT4G21060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A7XDQ9" /translation="MKRVKSELSTGRRFKLSHFLLGIGGLYLIFIAFKFPHFLEIAAV LSGDGSYDELDGKVVGDVNDADLNKPLVNSVYKDTFHRKLEDNLNQDAPLRPSKEPLE EGKGRLQPIKPLQHRYGRITGEIMRRMNKTSDLSVLERMADEAWTLGLKAWEEVDKFD GKKIGQNSLFDGKPESCPSWLSVSGEDLASGDRLMFLPCGLKAGSSITVVGTPRYAHQ EFVPQLARLRLGDGLVMVSQFMVELQGLKSVDGEDPPKILHLNPRLKGDWSHRPVIEH NTCYRMQWGTAQRCDGLRSKDDEDMLVDGHRRCEKWIRDDVADSKESKTTSWFKRFIG REQKPEVTWPFPFAEGRLFILTLRAAVDGYHINVGGRHVTSFPYRTGFSLEDATGLAI KGDVDVHSVYATSLPTSHPSFSPQRVLEMSPKWKAYPLPRRSIQLFIGVLSATNHFAE RMAVRKTWMQSSAIKSSNVVVRFFVALNTRKEVNAVLKKEAAYFGDIVILPFMDRYEL VVLKTIAICEFGVQNVSAAYIMKCDDDTFVRVDTVLKEIDGISPKKSLYMGNLNLLHR PLRNGKWAVTYEEWPEEVYPPYANGPGYIISSDIAKFIISQHGNRKLRLFKMEDVSMG MWVEQFNSSTTVQYSHNWKFCQYGCMVDYYTAHYQSPRQMICLWDKLSRGRAHCCNFR " CDS complement(join(22456568..22456673,22457068..22457261, 22457426..22457554,22457832..22458122,22458241..22458473, 22459094..22460000)) /locus_tag="TCM_029407" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30059.m000456; paralog of Thecc1EG010069t1" /codon_start=1 /product="Galactosyltransferase family protein isoform 2" /protein_id="EOY27580.1" /db_xref="TAIR:AT4G21060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A7XDQ9" /translation="MKRVKSELSTGRRFKLSHFLLGIGGLYLIFIAFKFPHFLEIAAV LSGDGSYDELDGKVVGDVNDADLNKPLVNSVYKDTFHRKLEDNLNQDAPLRPSKEPLE EGKGRLQPIKPLQHRYGRITGEIMRRMNKTSDLSVLERMADEAWTLGLKAWEEVDKFD GKKIGQNSLFDGKPESCPSWLSVSGEDLASGDRLMFLPCGLKAGSSITVVGTPRYAHQ EFVPQLARLRLGDGLVMVSQFMVELQGLKSVDGEDPPKILHLNPRLKGDWSHRPVIEH NTCYRMQWGTAQRCDGLRSKDDEDMLVDGHRRCEKWIRDDVADSKESKTTSWFKRFIG REQKPEVTWPFPFAEGRLFILTLRAAVDGYHINVGGRHVTSFPYRTGFSLEDATGLAI KGDVDVHSVYATSLPTSHPSFSPQRVLEMSPKWKAYPLPRRSIQLFIGVLSATNHFAE RMAVRKTWMQSSAIKSSNVVVRFFVALNTRKEVNAVLKKEAAYFGDIVILPFMDRYEL VVLKTIAICEFGVQNVSAAYIMKCDDDTFVRVDTVLKEIDGISPKKSLYMGNLNLLHR PLRNGKWAVTYEVCVVYTRSGQKKFILPMQMDLDILFPVILPNLLSHNMAIEN" gene 22461683..22467710 /locus_tag="TCM_029408" /note="dbxref CacaoGD:Thecc1EG029408" mRNA join(22461683..22462036,22462317..22462976, 22463598..22463710,22464145..22464404,22464955..22465076, 22465951..22466019,22466418..22466471,22466613..22466714, 22466985..22467709) /locus_tag="TCM_029408" /product="Plastid transcriptionally active 12 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021555001" /inference="similar to AA sequence:Phytozome:GSVIVT01021555001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc510t2; inference alignment:Newbler:10:TSA:cgbaB_g04646t00001" mRNA join(22461693..22461898,22461993..22462036, 22462317..22462976,22463598..22463710,22464145..22464404, 22464955..22465076,22465951..22466019,22466418..22466471, 22466613..22466714,22466985..22467710) /locus_tag="TCM_029408" /product="Plastid transcriptionally active 12 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021555001" /inference="similar to AA sequence:Phytozome:GSVIVT01021555001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04646t00001" CDS join(22461865..22461898,22461993..22462036, 22462317..22462976,22463598..22463710,22464145..22464404, 22464955..22465076,22465951..22466019,22466418..22466471, 22466613..22466714,22466985..22467083) /locus_tag="TCM_029408" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Plastid transcriptionally active 12 isoform 1" /protein_id="EOY27581.1" /db_xref="Phytozome:GSVIVT01021555001" /db_xref="TAIR:AT2G34640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IHY7" /translation="MSSLSVKFPYQDRCVPAGKSGYNHLQTSFVGSFPAGILQIRVGL NKPSKGANLFPCIKCEKEEPFEHVSVERPPYYSYMDSTSGQLEPASGARASIPGEEYW PEGTASRVRAARAPEPTGTSEGSPSYGKTPGSRRKKYKTAAAAESSQVSIEPSDPVVP EIIEETMEDPKDFSSDYVIYQTEFEEAEEAGYELDKKFGRPHPFIDPKVKKPMEEPLT SEELWWNWRKPEKEQWSRWQRRRPDVETVFLKAMAETGQVKLYGEHPTLTETSLYRAR RHLFKEERLKAEQERLERIGPMAYYSEWVKAWKRDTSREAIQKHFEETGEDENTQLIE MFCHQTDREYRIMMGTDLRIRRDPLAMRMREDQIKQIWGGDPVYPTVNYIQDPDEVID YRGPDFHEPTPNMLAHLKEHGKIISREELEKILAKEKTEELEITDMDDAMARAVDIGE NEENEEDNEADSEEEEEKIRRNWSVLKSTPQLKKSKAKPKKGDPMSLEEAVEDSENLT DFLMDFEEDE" CDS join(22461929..22462036,22462317..22462976, 22463598..22463710,22464145..22464404,22464955..22465076, 22465951..22466019,22466418..22466471,22466613..22466714, 22466985..22467083) /locus_tag="TCM_029408" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Plastid transcriptionally active 12 isoform 2" /protein_id="EOY27582.1" /db_xref="Phytozome:GSVIVT01021555001" /db_xref="TAIR:AT2G34640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IHY7" /translation="MLFDIFKLFFFKLFYLFGTLVDRCVPAGKSGYNHLQTSFVGSFP AGILQIRVGLNKPSKGANLFPCIKCEKEEPFEHVSVERPPYYSYMDSTSGQLEPASGA RASIPGEEYWPEGTASRVRAARAPEPTGTSEGSPSYGKTPGSRRKKYKTAAAAESSQV SIEPSDPVVPEIIEETMEDPKDFSSDYVIYQTEFEEAEEAGYELDKKFGRPHPFIDPK VKKPMEEPLTSEELWWNWRKPEKEQWSRWQRRRPDVETVFLKAMAETGQVKLYGEHPT LTETSLYRARRHLFKEERLKAEQERLERIGPMAYYSEWVKAWKRDTSREAIQKHFEET GEDENTQLIEMFCHQTDREYRIMMGTDLRIRRDPLAMRMREDQIKQIWGGDPVYPTVN YIQDPDEVIDYRGPDFHEPTPNMLAHLKEHGKIISREELEKILAKEKTEELEITDMDD AMARAVDIGENEENEEDNEADSEEEEEKIRRNWSVLKSTPQLKKSKAKPKKGDPMSLE EAVEDSENLTDFLMDFEEDE" gene complement(22479992..22481557) /locus_tag="TCM_029409" /note="dbxref CacaoGD:Thecc1EG029409" mRNA complement(join(22479992..22480182,22480693..22480735, 22480843..22481557)) /locus_tag="TCM_029409" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc376t13" CDS complement(join(22480084..22480182,22480693..22480735, 22480843..22480964)) /locus_tag="TCM_029409" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27583.1" /translation="MMQRYKLKESCNTIIITIMHLGFLLSKLSLSFVQANCFRKRVGG SFLFPAMEIVVGNHCSGGSLLNDMVANLQLATCNLQLATLPLS" gene 22480358..22488901 /locus_tag="TCM_029410" /note="dbxref CacaoGD:Thecc1EG029410" mRNA join(22480358..22481714,22482400..22482521, 22483810..22483908,22483995..22484051,22484135..22484290, 22484375..22484459,22484714..22484804,22485304..22485468, 22485561..22485683,22485990..22486065,22486181..22486328, 22486511..22487664,22487821..22488011,22488276..22488890) /locus_tag="TCM_029410" /product="Auxin response factor 6 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g09750.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001906t2" /inference="similar to AA sequence:Phytozome:POPTR_0011s09450.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b028443t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6343t2" mRNA join(22480358..22481714,22482409..22482521, 22483810..22483908,22483995..22484051,22484135..22484290, 22484375..22484459,22484714..22484804,22485304..22485468, 22485561..22485683,22485990..22486065,22486181..22486328, 22486511..22487664,22487821..22488011,22488276..22488890) /locus_tag="TCM_029410" /product="Auxin response factor 6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g09750.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001906t2" /inference="similar to AA sequence:Phytozome:POPTR_0011s09450.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6343t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6343t2" CDS join(22481672..22481714,22482400..22482521, 22483810..22483908,22483995..22484051,22484135..22484290, 22484375..22484459,22484714..22484804,22485304..22485468, 22485561..22485683,22485990..22486065,22486181..22486328, 22486511..22487664,22487821..22488011,22488276..22488474) /locus_tag="TCM_029410" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG001906t2" /codon_start=1 /product="Auxin response factor 6 isoform 2" /protein_id="EOY27585.1" /db_xref="Phytozome:POPTR_0011s09450.1" /db_xref="TAIR:AT1G30330.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q653U3" /translation="MRLASAGFNPQTQEDFAGEKRVLNSELWHACAGPLVSLPPVGSR VVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTL QPLSPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLD FSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIW NEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASP SEFVIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSH WRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPAPFPLRLKRPWPPGLPSFHGIKD DDLGMNSPLMWLRGDADRGMQSLNLQGIGVTPWMQPRLDASMVGLPADMYQAMAAAAL QDLRAVDPSKPATASLLQFQQPQNLPCRPAALMQPQMLQQSQPQAFLQGVEDNQHQSQ SQAQTPPHLLQQQLQHQNSFNNQQHPQHPLSQQHQQLVDHQQIHSAVSAMSQYASASQ SQSSSLQAMPSLCQQQSFSDSNGNTVTSPIVSPLHSLLGSFPQDESSNLLNLPRSNPV ITSAAWPSKRAAVEVLSSGSPQCVLPQVEQLGPTQTNMSQNSISLPPFPGRECSIDQE GGTDPQSHLLFGVNIEPSSLLMPNGMSSLRGVGSDSDSTTIPFSSNYMSTAGTDFSVN PAMTPSSCIDESGFLQSPENVGQGNPQTRTFVKVYKSGSFGRSLDISKFSSYNELRSE LARMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQQ MGKRGLELLNSVPVQRLSNGSCDDYVSRQDSRNLSSGIASVGSLDY" CDS join(22481672..22481714,22482409..22482521, 22483810..22483908,22483995..22484051,22484135..22484290, 22484375..22484459,22484714..22484804,22485304..22485468, 22485561..22485683,22485990..22486065,22486181..22486328, 22486511..22487664,22487821..22488011,22488276..22488474) /locus_tag="TCM_029410" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG001906t2" /codon_start=1 /product="Auxin response factor 6 isoform 1" /protein_id="EOY27584.1" /db_xref="Phytozome:POPTR_0011s09450.1" /db_xref="TAIR:AT1G30330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZTX8" /translation="MRLASAGFNPQTQEGEKRVLNSELWHACAGPLVSLPPVGSRVVY FPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPL SPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQ QPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEK NQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEF VIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRS VKVGWDESTAGERQPRVSLWEIEPLTTFPMYPAPFPLRLKRPWPPGLPSFHGIKDDDL GMNSPLMWLRGDADRGMQSLNLQGIGVTPWMQPRLDASMVGLPADMYQAMAAAALQDL RAVDPSKPATASLLQFQQPQNLPCRPAALMQPQMLQQSQPQAFLQGVEDNQHQSQSQA QTPPHLLQQQLQHQNSFNNQQHPQHPLSQQHQQLVDHQQIHSAVSAMSQYASASQSQS SSLQAMPSLCQQQSFSDSNGNTVTSPIVSPLHSLLGSFPQDESSNLLNLPRSNPVITS AAWPSKRAAVEVLSSGSPQCVLPQVEQLGPTQTNMSQNSISLPPFPGRECSIDQEGGT DPQSHLLFGVNIEPSSLLMPNGMSSLRGVGSDSDSTTIPFSSNYMSTAGTDFSVNPAM TPSSCIDESGFLQSPENVGQGNPQTRTFVKVYKSGSFGRSLDISKFSSYNELRSELAR MFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQQMGK RGLELLNSVPVQRLSNGSCDDYVSRQDSRNLSSGIASVGSLDY" mRNA join(22484190..22484290,22484375..22484459, 22484714..22484804,22485304..22485683,22485990..22486065, 22486181..22486328,22486511..22487664,22487821..22488011, 22488276..22488901) /locus_tag="TCM_029410" /product="Auxin response factor 6 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g09750.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001906t2" /inference="similar to AA sequence:Phytozome:POPTR_0011s09450.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc31t11; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6343t2" mRNA join(<22484190..22484290,22484375..22484459, 22484714..22484804,22485304..22485468,22485561..22485683, 22485990..22486065,22486181..22486328,22486511..22488011, 22488276..22488901) /locus_tag="TCM_029410" /product="Auxin response factor 6 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g09750.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001906t2" /inference="similar to AA sequence:Phytozome:POPTR_0011s09450.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc31t13; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6343t2" CDS join(<22484192..22484290,22484375..22484459, 22484714..22484804,22485304..22485468,22485561..22485683, 22485990..22486065,22486181..22486328,22486511..22487781) /locus_tag="TCM_029410" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG001906t2" /codon_start=1 /product="Auxin response factor 6 isoform 3" /protein_id="EOY27586.1" /db_xref="Phytozome:POPTR_0011s09450.1" /db_xref="TAIR:AT1G30330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6H6V4" /translation="TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQEL IARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGI RRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKY IKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVKVGWDE STAGERQPRVSLWEIEPLTTFPMYPAPFPLRLKRPWPPGLPSFHGIKDDDLGMNSPLM WLRGDADRGMQSLNLQGIGVTPWMQPRLDASMVGLPADMYQAMAAAALQDLRAVDPSK PATASLLQFQQPQNLPCRPAALMQPQMLQQSQPQAFLQGVEDNQHQSQSQAQTPPHLL QQQLQHQNSFNNQQHPQHPLSQQHQQLVDHQQIHSAVSAMSQYASASQSQSSSLQAMP SLCQQQSFSDSNGNTVTSPIVSPLHSLLGSFPQDESSNLLNLPRSNPVITSAAWPSKR AAVEVLSSGSPQCVLPQVEQLGPTQTNMSQNSISLPPFPGRECSIDQEGGTDPQSHLL FGVNIEPSSLLMPNGMSSLRGVGSDSDSTTIPFSSNYMSTAGTDFSVNPAMTPSSCID ESGFLQSPENVGQGNPQTRTFVKVSDLLFLIYTSRLMNLAGLLSSIGFVNFVALVLRT QIF" mobile_element 22484652..22484699 /note="source:scaffold_5_CACTA_0610 2550 2598" /mobile_element_type="transposon:TIR/CACTA" CDS join(22485637..22485683,22485990..22486065, 22486181..22486328,22486511..22487664,22487821..22488011, 22488276..22488474) /locus_tag="TCM_029410" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG001906t2" /codon_start=1 /product="Auxin response factor 6 isoform 4" /protein_id="EOY27587.1" /db_xref="Phytozome:POPTR_0011s09450.1" /db_xref="TAIR:AT1G30330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZTX8" /translation="MRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVKVGW DESTAGERQPRVSLWEIEPLTTFPMYPAPFPLRLKRPWPPGLPSFHGIKDDDLGMNSP LMWLRGDADRGMQSLNLQGIGVTPWMQPRLDASMVGLPADMYQAMAAAALQDLRAVDP SKPATASLLQFQQPQNLPCRPAALMQPQMLQQSQPQAFLQGVEDNQHQSQSQAQTPPH LLQQQLQHQNSFNNQQHPQHPLSQQHQQLVDHQQIHSAVSAMSQYASASQSQSSSLQA MPSLCQQQSFSDSNGNTVTSPIVSPLHSLLGSFPQDESSNLLNLPRSNPVITSAAWPS KRAAVEVLSSGSPQCVLPQVEQLGPTQTNMSQNSISLPPFPGRECSIDQEGGTDPQSH LLFGVNIEPSSLLMPNGMSSLRGVGSDSDSTTIPFSSNYMSTAGTDFSVNPAMTPSSC IDESGFLQSPENVGQGNPQTRTFVKVYKSGSFGRSLDISKFSSYNELRSELARMFGLE GQLEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQQMGKRGLEL LNSVPVQRLSNGSCDDYVSRQDSRNLSSGIASVGSLDY" gene complement(22491459..22503572) /locus_tag="TCM_029411" /note="dbxref CacaoGD:Thecc1EG029411" mRNA complement(join(22491459..22491897,22492285..22492366, 22492471..22492918,22493563..22493713,22493813..22494234, 22494605..22494776,22495393..22495952,22503433..22503572)) /locus_tag="TCM_029411" /product="Remorin family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021550001" /inference="similar to AA sequence:Phytozome:GSVIVT01021550001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b028444t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc451t3" mRNA complement(join(22491527..22491897,22492285..22492366, 22492471..22492918,22493563..22494234,22494605..22494776, 22495393..22495952,22503433..22503572)) /locus_tag="TCM_029411" /product="Remorin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021550001" /inference="similar to AA sequence:ricco:29599.m000175" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc451t3" mRNA complement(join(22491581..22491897,22492285..22492366, 22492471..22492918,22493563..22494628)) /locus_tag="TCM_029411" /product="Remorin family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021550001" /inference="similar to AA sequence:ricco:29599.m000175" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc451t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc451t3; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc999t3" CDS complement(join(22491691..22491897,22492285..22492366, 22492471..22492918,22493563..22493713,22493813..22494234, 22494605..22494776,22495393..22495422)) /locus_tag="TCM_029411" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Remorin family protein isoform 2" /protein_id="EOY27589.1" /db_xref="Phytozome:GSVIVT01021550001" /db_xref="TAIR:AT1G30320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJG3" /translation="MEYERIDKVQSGISISPSKLRMKLMGPLHRKKDGSNSNSSRTSP SRIEDAEFVNSLLASKSGEFYEEVPSLDVAPVKISNETVLDSSLNDQISSQPKESLPR ESIDVGRSKLQQFSKSDNGNSSAIHPIRTIEDENLDYDSNASSSSFEFHKGERALPNS MTRSYSRPMSSKWNDAEKWIMNRQNLQATYAKKNAFNNQANRFHMTNMMPFEKFSFIP AGAHPISAQACGGNLSSDQYPHSKDLREVAQRESSAEDTTVVPAIRSVSMRDMGTEMT PVTSQEPSRTATPAGATTPLRSPTSSIPSTPRRGEPTSTPLDHTTDDESQRPTNNRKK ELSEQELKLKTRREIVALGVQLGKMNIAAWASKDEKENNTSSVETSNTEEPEQIEYEK RAAAWEEAEKSRHTARYKREEIKIQAWESQQRAKLEAEMRRIEAKVEQMRAQAQAKMV KKIAMARQRSEEKRAAAEARKNREAERTAAQAEYIRQTGRMPSSHYICCGWLS" CDS complement(join(22491691..22491897,22492285..22492366, 22492471..22492918,22493563..22494234,22494605..22494776, 22495393..22495422)) /locus_tag="TCM_029411" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29599.m000175" /codon_start=1 /product="Remorin family protein isoform 1" /protein_id="EOY27588.1" /db_xref="TAIR:AT1G30320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJG3" /translation="MEYERIDKVQSGISISPSKLRMKLMGPLHRKKDGSNSNSSRTSP SRIEDAEFVNSLLASKSGEFYEEVPSLDVAPVKISNETVLDSSLNDQISSQPKESLPR ESIDVGRSKLQQFSKSDNGNSSAIHPIRTIEDENLDYDSNASSSSFEFHKGERALPNS MTRSYSRPMSSKWNDAEKWIMNRQNLQATYAKKNAFNNQANRFHMTNMVRVAPESANY DQRSAVNRIADTKRVDFCQSAVQMPFEKFSFIPAGAHPISAQACGGNLSSDQYPHSKD LREVAQRESSAEDTTVVPAIRSVSMRDMGTEMTPVTSQEPSRTATPAGATTPLRSPTS SIPSTPRRGEPTSTPLDHTTDDESQRPTNNRKKELSEQELKLKTRREIVALGVQLGKM NIAAWASKDEKENNTSSVETSNTEEPEQIEYEKRAAAWEEAEKSRHTARYKREEIKIQ AWESQQRAKLEAEMRRIEAKVEQMRAQAQAKMVKKIAMARQRSEEKRAAAEARKNREA ERTAAQAEYIRQTGRMPSSHYICCGWLS" CDS complement(join(22491691..22491897,22492285..22492366, 22492471..22492918,22493563..22493956)) /locus_tag="TCM_029411" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29599.m000175" /codon_start=1 /product="Remorin family protein isoform 4" /protein_id="EOY27591.1" /db_xref="TAIR:AT1G30320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJG3" /translation="MTRSYSRPMSSKWNDAEKWIMNRQNLQATYAKKNAFNNQANRFH MTNMVRVAPESANYDQRSAVNRIADTKRVDFCQSAVQMPFEKFSFIPAGAHPISAQAC GGNLSSDQYPHSKDLREVAQRESSAEDTTVVPAIRSVSMRDMGTEMTPVTSQEPSRTA TPAGATTPLRSPTSSIPSTPRRGEPTSTPLDHTTDDESQRPTNNRKKELSEQELKLKT RREIVALGVQLGKMNIAAWASKDEKENNTSSVETSNTEEPEQIEYEKRAAAWEEAEKS RHTARYKREEIKIQAWESQQRAKLEAEMRRIEAKVEQMRAQAQAKMVKKIAMARQRSE EKRAAAEARKNREAERTAAQAEYIRQTGRMPSSHYICCGWLS" mRNA complement(join(22491874..22492061,22492285..22492366, 22492471..22492918,22493563..22494234,22494605..22494776, 22495393..22495795)) /locus_tag="TCM_029411" /product="Remorin family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021550001" /inference="similar to AA sequence:Phytozome:GSVIVT01021550001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc451t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc999t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc451t3" CDS complement(join(22492005..22492061,22492285..22492366, 22492471..22492918,22493563..22494234,22494605..22494776, 22495393..22495422)) /locus_tag="TCM_029411" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Remorin family protein isoform 3" /protein_id="EOY27590.1" /db_xref="Phytozome:GSVIVT01021550001" /db_xref="TAIR:AT1G30320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJG3" /translation="MEYERIDKVQSGISISPSKLRMKLMGPLHRKKDGSNSNSSRTSP SRIEDAEFVNSLLASKSGEFYEEVPSLDVAPVKISNETVLDSSLNDQISSQPKESLPR ESIDVGRSKLQQFSKSDNGNSSAIHPIRTIEDENLDYDSNASSSSFEFHKGERALPNS MTRSYSRPMSSKWNDAEKWIMNRQNLQATYAKKNAFNNQANRFHMTNMVRVAPESANY DQRSAVNRIADTKRVDFCQSAVQMPFEKFSFIPAGAHPISAQACGGNLSSDQYPHSKD LREVAQRESSAEDTTVVPAIRSVSMRDMGTEMTPVTSQEPSRTATPAGATTPLRSPTS SIPSTPRRGEPTSTPLDHTTDDESQRPTNNRKKELSEQELKLKTRREIVALGVQLGKM NIAAWASKDEKENNTSSVETSNTEEPEQIEYEKRAAAWEEAEKSRHTARYKREEIKIQ AWESQQRAKLEAEMRRIEVEIMQLTELSAITKSVNI" mobile_element 22497914..22497988 /note="source:scaffold_5_CACTA_0584 4970 5044" /mobile_element_type="transposon:TIR/CACTA" gene complement(22504135..22506010) /locus_tag="TCM_029413" /note="dbxref CacaoGD:Thecc1EG029413" mRNA complement(join(22504135..22504680,22505290..22505355, 22505488..22506010)) /locus_tag="TCM_029413" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29599.m000174" /inference="similar to AA sequence:ricco:29599.m000174" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g14131t00001" CDS complement(join(22504186..22504680,22505290..22505355, 22505488..22505661)) /locus_tag="TCM_029413" /note="dbxref ricco:29599.m000174" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27592.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLU3" /translation="MACFVPFNNRNLDVTLFVFRPTVVLVDELVDSLKQFCVCTETLG CVQSSIFKSIHGNLIIWYGGWMKKATENKEVLTATLLSMLASMSSMAVLIEHSFFDAY AGESKDGSNAAKYSTGDIVSMNVIASSSSDINDVSYANLALFKSRFLKMEGATAGVCL KCQSMPMVACLYVWKSLLLCYSWILASDYRKTMLPYLERFSLSVKYDIFWVVYVSSEN VHNYQIPPHHHVLENRGETTNEGRII" gene complement(22506214..22510481) /locus_tag="TCM_029414" /note="dbxref CacaoGD:Thecc1EG029414" mRNA complement(join(22506214..22506569,22506807..22506868, 22506990..22507099,22507184..22507219,22507948..22508006, 22508608..22508713,22508800..22508947,22509234..22509361, 22509724..22509859,22510039..22510481)) /locus_tag="TCM_029414" /product="Metallo-hydrolase/oxidoreductase superfamily protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G30300.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021548001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5844t2" CDS complement(join(22506811..22506868,22506990..22507099, 22507184..22507219,22507948..22508006,22508608..22508713, 22508800..22508947,22509234..22509361,22509724..22509859, 22510039..22510385)) /locus_tag="TCM_029414" /codon_start=1 /product="Metallo-hydrolase/oxidoreductase superfamily protein" /protein_id="EOY27593.1" /db_xref="Phytozome:GSVIVT01021548001" /db_xref="TAIR:AT1G30300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TKC4" /translation="MKFPLRPLYAFSLSLPSLAFSLCAPQTQISKIKKKKQRKRKMEN QKPLQNGNKVDDNLLAVDNRDRDGDGSALIFLGTGCSSAVPNAMCLIQPSDPPCHVCF QSLSIPPDRNPNYRCNTSLLIDYCSSNGKHNYVIIDVGKTFREQVLRWFTFHKIPRID SIILTHEHADAVLGLDDIRAVQPHSPTNDIDPTAIFLTQYAMDSIATKFPYLVQKKLR EGQELRRVAQLDWRIIEEQYDRPFFASGLKFVPLPVMHGEDYICLGFLFGEKCKVAYI SDVSRFPSNTEYVISKNGAGQLDLLILDCLYKRGSHNVHLCLPQTLEALKRICPKQAL LIGMTHEFDHEKDNEFLMEWSEREGIHVQLARDGLRVPIDL" gene 22510919..22515661 /locus_tag="TCM_029415" /note="dbxref CacaoGD:Thecc1EG029415" mRNA join(22510919..22513845,22514931..22515661) /locus_tag="TCM_029415" /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb08g021630.1" /inference="similar to AA sequence:ricco:30028.m000244" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1175t7; alternateUTRof:Thecc1EG029415t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1188t7" mRNA join(22510955..22513847,22514551..22514680, 22514933..22515661) /locus_tag="TCM_029415" /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb08g021630.1" /inference="similar to AA sequence:ricco:30028.m000244" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1171t6; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1188t7" mRNA join(22510955..22513847,22514551..22514680, 22515268..22515661) /locus_tag="TCM_029415" /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb08g021630.1" /inference="similar to AA sequence:ricco:30028.m000244" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1171t1; alternateUTRof:Thecc1EG029415t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1188t7" CDS 22511186..22513732 /locus_tag="TCM_029415" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30028.m000244" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /protein_id="EOY27595.1" /db_xref="TAIR:AT1G30290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYX3" /translation="MHSGSISYPRIREILARPCKCFGFFQFHTCFYCSKVAFVAKKAS CELTSRFYDYPFAYTRFNAYFSSFSVRNFNSGSHFLSNSSVQFMGRDNFDDGNGDYAK FRDMGVRDSGELCLFDDHNGGRQKNRNLKFGDFDEVEEEEEEGEEGRDCRDIDDNFMI LNSCNGHRVQREDVWRVELEEDEFRHPLVREICRLIQLRSAWNAKLESDLRYLLRSLK PRQVCAVLLSQVDERVALEFFYWADRQWRYRHNLIVYYIMLEILSKTKLCQGAKRVLR LMARRGIECQPEAFSYLMVSYSRAGKLRDAMKVLTLMQKAGVELNLSVCNTAIHVLVM ANRMEKALRFFQRMQLVGITPNVVTYNCLIKGYCNMYQVEDALLLIAEMPSKNCSPDK VSYYTIMSFLCKEKQVKEVRDLMEKMSKDSNLFPDQVTYNTLIHMLSKHGHADEALEF LREAEGRGFRIDKVGHSAIVHSYCKQGRIDEAKSIVNEMLSKGCSPDVVTYTAVVDGF CRIGKLDQAEKMLQQMYKHGCKPNTVSYTALLTGLCRKGNSLRAREMMNVSEEEWWTP NAISYSVVMHGLRKEGKLSEACHVVREMVSKGFFPGPVEINLLIESLCQEGKMDEAKK FLEECLNKGCAVNVVNFTTLIHGYCRKDDLEAALSLLDDMYLSNKHPDAVTYTTVIDA LGKNGRIEEATDLTMKMLKKGLVPTPVTYRTVIHRYCQMGRVEDLLKLLDKMLSRQKC KTAYNQVIEKLCSFGNLEEADKLLGRILKTASRTDAKTCTMLMESYLSKEMPLSAYKV ACRMFNRNLIPDLKLSEKVIKQLMLEGKSAEADNLMLRFVEHGCHSPQFE" CDS 22511186..22513732 /locus_tag="TCM_029415" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30028.m000244" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /protein_id="EOY27596.1" /db_xref="TAIR:AT1G30290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYX3" /translation="MHSGSISYPRIREILARPCKCFGFFQFHTCFYCSKVAFVAKKAS CELTSRFYDYPFAYTRFNAYFSSFSVRNFNSGSHFLSNSSVQFMGRDNFDDGNGDYAK FRDMGVRDSGELCLFDDHNGGRQKNRNLKFGDFDEVEEEEEEGEEGRDCRDIDDNFMI LNSCNGHRVQREDVWRVELEEDEFRHPLVREICRLIQLRSAWNAKLESDLRYLLRSLK PRQVCAVLLSQVDERVALEFFYWADRQWRYRHNLIVYYIMLEILSKTKLCQGAKRVLR LMARRGIECQPEAFSYLMVSYSRAGKLRDAMKVLTLMQKAGVELNLSVCNTAIHVLVM ANRMEKALRFFQRMQLVGITPNVVTYNCLIKGYCNMYQVEDALLLIAEMPSKNCSPDK VSYYTIMSFLCKEKQVKEVRDLMEKMSKDSNLFPDQVTYNTLIHMLSKHGHADEALEF LREAEGRGFRIDKVGHSAIVHSYCKQGRIDEAKSIVNEMLSKGCSPDVVTYTAVVDGF CRIGKLDQAEKMLQQMYKHGCKPNTVSYTALLTGLCRKGNSLRAREMMNVSEEEWWTP NAISYSVVMHGLRKEGKLSEACHVVREMVSKGFFPGPVEINLLIESLCQEGKMDEAKK FLEECLNKGCAVNVVNFTTLIHGYCRKDDLEAALSLLDDMYLSNKHPDAVTYTTVIDA LGKNGRIEEATDLTMKMLKKGLVPTPVTYRTVIHRYCQMGRVEDLLKLLDKMLSRQKC KTAYNQVIEKLCSFGNLEEADKLLGRILKTASRTDAKTCTMLMESYLSKEMPLSAYKV ACRMFNRNLIPDLKLSEKVIKQLMLEGKSAEADNLMLRFVEHGCHSPQFE" CDS 22511186..22513732 /locus_tag="TCM_029415" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30028.m000244" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /protein_id="EOY27597.1" /db_xref="TAIR:AT1G30290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYX3" /translation="MHSGSISYPRIREILARPCKCFGFFQFHTCFYCSKVAFVAKKAS CELTSRFYDYPFAYTRFNAYFSSFSVRNFNSGSHFLSNSSVQFMGRDNFDDGNGDYAK FRDMGVRDSGELCLFDDHNGGRQKNRNLKFGDFDEVEEEEEEGEEGRDCRDIDDNFMI LNSCNGHRVQREDVWRVELEEDEFRHPLVREICRLIQLRSAWNAKLESDLRYLLRSLK PRQVCAVLLSQVDERVALEFFYWADRQWRYRHNLIVYYIMLEILSKTKLCQGAKRVLR LMARRGIECQPEAFSYLMVSYSRAGKLRDAMKVLTLMQKAGVELNLSVCNTAIHVLVM ANRMEKALRFFQRMQLVGITPNVVTYNCLIKGYCNMYQVEDALLLIAEMPSKNCSPDK VSYYTIMSFLCKEKQVKEVRDLMEKMSKDSNLFPDQVTYNTLIHMLSKHGHADEALEF LREAEGRGFRIDKVGHSAIVHSYCKQGRIDEAKSIVNEMLSKGCSPDVVTYTAVVDGF CRIGKLDQAEKMLQQMYKHGCKPNTVSYTALLTGLCRKGNSLRAREMMNVSEEEWWTP NAISYSVVMHGLRKEGKLSEACHVVREMVSKGFFPGPVEINLLIESLCQEGKMDEAKK FLEECLNKGCAVNVVNFTTLIHGYCRKDDLEAALSLLDDMYLSNKHPDAVTYTTVIDA LGKNGRIEEATDLTMKMLKKGLVPTPVTYRTVIHRYCQMGRVEDLLKLLDKMLSRQKC KTAYNQVIEKLCSFGNLEEADKLLGRILKTASRTDAKTCTMLMESYLSKEMPLSAYKV ACRMFNRNLIPDLKLSEKVIKQLMLEGKSAEADNLMLRFVEHGCHSPQFE" mRNA join(22511419..22513847,22514551..22514680, 22514933..22515590) /locus_tag="TCM_029415" /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb08g021630.1" /inference="similar to AA sequence:ricco:30028.m000244" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1188t7; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1188t7" CDS 22511447..22513732 /locus_tag="TCM_029415" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30028.m000244" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /protein_id="EOY27594.1" /db_xref="TAIR:AT1G30290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYX3" /translation="MGRDNFDDGNGDYAKFRDMGVRDSGELCLFDDHNGGRQKNRNLK FGDFDEVEEEEEEGEEGRDCRDIDDNFMILNSCNGHRVQREDVWRVELEEDEFRHPLV REICRLIQLRSAWNAKLESDLRYLLRSLKPRQVCAVLLSQVDERVALEFFYWADRQWR YRHNLIVYYIMLEILSKTKLCQGAKRVLRLMARRGIECQPEAFSYLMVSYSRAGKLRD AMKVLTLMQKAGVELNLSVCNTAIHVLVMANRMEKALRFFQRMQLVGITPNVVTYNCL IKGYCNMYQVEDALLLIAEMPSKNCSPDKVSYYTIMSFLCKEKQVKEVRDLMEKMSKD SNLFPDQVTYNTLIHMLSKHGHADEALEFLREAEGRGFRIDKVGHSAIVHSYCKQGRI DEAKSIVNEMLSKGCSPDVVTYTAVVDGFCRIGKLDQAEKMLQQMYKHGCKPNTVSYT ALLTGLCRKGNSLRAREMMNVSEEEWWTPNAISYSVVMHGLRKEGKLSEACHVVREMV SKGFFPGPVEINLLIESLCQEGKMDEAKKFLEECLNKGCAVNVVNFTTLIHGYCRKDD LEAALSLLDDMYLSNKHPDAVTYTTVIDALGKNGRIEEATDLTMKMLKKGLVPTPVTY RTVIHRYCQMGRVEDLLKLLDKMLSRQKCKTAYNQVIEKLCSFGNLEEADKLLGRILK TASRTDAKTCTMLMESYLSKEMPLSAYKVACRMFNRNLIPDLKLSEKVIKQLMLEGKS AEADNLMLRFVEHGCHSPQFE" mobile_element complement(22517530..22517741) /note="source:CACAO_on_S_E46_scaffold_2 1169 1377" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(22517771..22518153) /note="source:CACAO_on_S_E46_scaffold_2 379 784" /mobile_element_type="transposon:TIR/Mutator" gene 22520924..>22546942 /locus_tag="TCM_029416" /note="dbxref CacaoGD:Thecc1EG029416" mRNA join(22520924..22521767,22522226..22522773, 22522887..22522957,22523111..22523167,22523399..22523488, 22523579..22523755,22523888..22524231) /locus_tag="TCM_029416" /product="Chaperone DnaJ-domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29599.m000172" /inference="similar to AA sequence:ricco:29599.m000172" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05252t00001" mRNA join(22521126..22521767,22522226..22522773, 22522887..22522957,22523111..22523167,22523399..22523488, 22523596..22523755,22523888..22523918,22524026..22524042, 22541251..22541255,22546933..>22546942) /locus_tag="TCM_029416" /product="Chaperone DnaJ-domain-containing protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29599.m000172" /inference="similar to AA sequence:ricco:29599.m000172" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial3; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc614t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc614t4; inference alignment:Newbler:10:TSA:cgbaP2_g05252t00001" mRNA join(22521213..22521767,22522226..22522773, 22522887..22522957,22523111..22523167,22523399..22523488, 22523579..22523755,22523888..22523921,22524029..22524297) /locus_tag="TCM_029416" /product="Chaperone DnaJ-domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29599.m000172" /inference="similar to AA sequence:ricco:29599.m000172" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5829t1; inference alignment:Newbler:10:TSA:cgbaP2_g05252t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc614t4" CDS join(22521274..22521767,22522226..22522773, 22522887..22522957,22523111..22523167,22523399..22523488, 22523596..22523755,22523888..22523918,22524026..22524042, 22541251..22541255,22546933..>22546941) /locus_tag="TCM_029416" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29599.m000172" /codon_start=1 /product="Chaperone DnaJ-domain-containing protein, putative isoform 3" /protein_id="EOY27600.1" /db_xref="TAIR:AT1G30280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C752" /translation="MDESWRRCMGMPTTHHLPRRKSVENTIFSMSHHVTMVADHTLDA DDFFDVFGGPPRSVLCRTFSGDFTRSTSFYEEVFRPPEFVSSRKTKCGRSLPAFRIPA RGEGFYSDIFGSDDDLRRSRERSGSNSKAKSNSSSVLSSEELSPLRPVVGDDVGLSSF ASKLRPINVPCRWNSTTMMPDQELGMQRGMALPAFPSSRSFYNENLYMENEHNVDNLR SSCYGFCRRASSPEIISLEPHSFRSVKISADDLEFNSPSSPASSLCHEAEARAGVQTD SVQEEEEEEEEEEEEDEDEVMSSYVIDINSDLRECTGEAVSIDEAIAWAKERYNTQSS EREHEKEQPIETEASSNNAHEYFDRQTDGHGTKQSPMEEEQKKSKAEEEKERSEEHIK MGLLDEDVKLWSSGKENNIRLLLSTLHHRLAHDSSHEPYRELTSEKSLSESKAVSSPR QTATKRCNTITKICRRQGLFHPPGCMGCIHLPRCVQEVSSNLVG" CDS join(22521274..22521767,22522226..22522773, 22522887..22522957,22523111..22523167,22523399..22523488, 22523579..22523755,22523888..22523921,22524029..22524054) /locus_tag="TCM_029416" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29599.m000172" /codon_start=1 /product="Chaperone DnaJ-domain-containing protein, putative isoform 2" /protein_id="EOY27599.1" /db_xref="TAIR:AT1G30280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C752" /translation="MDESWRRCMGMPTTHHLPRRKSVENTIFSMSHHVTMVADHTLDA DDFFDVFGGPPRSVLCRTFSGDFTRSTSFYEEVFRPPEFVSSRKTKCGRSLPAFRIPA RGEGFYSDIFGSDDDLRRSRERSGSNSKAKSNSSSVLSSEELSPLRPVVGDDVGLSSF ASKLRPINVPCRWNSTTMMPDQELGMQRGMALPAFPSSRSFYNENLYMENEHNVDNLR SSCYGFCRRASSPEIISLEPHSFRSVKISADDLEFNSPSSPASSLCHEAEARAGVQTD SVQEEEEEEEEEEEEDEDEVMSSYVIDINSDLRECTGEAVSIDEAIAWAKERYNTQSS EREHEKEQPIETEASSNNAHEYFDRQTDGHGTKQSPMEEEQKKSKAEEEKERSEEHIK MGLLDEDVKLWSSGKENNIRLLLSTLHHILWPNSGWHMIPLMSLTESSQVKKAYQKAR LCLHPDKLQQRGATLSQKYVADKAFSILQDAWAAFISQDVCKKYLVIW" CDS join(22521274..22521767,22522226..22522773, 22522887..22522957,22523111..22523167,22523399..22523488, 22523579..22523755,22523888..22523932) /locus_tag="TCM_029416" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29599.m000172" /codon_start=1 /product="Chaperone DnaJ-domain-containing protein, putative isoform 1" /protein_id="EOY27598.1" /db_xref="TAIR:AT1G30280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C752" /translation="MDESWRRCMGMPTTHHLPRRKSVENTIFSMSHHVTMVADHTLDA DDFFDVFGGPPRSVLCRTFSGDFTRSTSFYEEVFRPPEFVSSRKTKCGRSLPAFRIPA RGEGFYSDIFGSDDDLRRSRERSGSNSKAKSNSSSVLSSEELSPLRPVVGDDVGLSSF ASKLRPINVPCRWNSTTMMPDQELGMQRGMALPAFPSSRSFYNENLYMENEHNVDNLR SSCYGFCRRASSPEIISLEPHSFRSVKISADDLEFNSPSSPASSLCHEAEARAGVQTD SVQEEEEEEEEEEEEDEDEVMSSYVIDINSDLRECTGEAVSIDEAIAWAKERYNTQSS EREHEKEQPIETEASSNNAHEYFDRQTDGHGTKQSPMEEEQKKSKAEEEKERSEEHIK MGLLDEDVKLWSSGKENNIRLLLSTLHHILWPNSGWHMIPLMSLTESSQVKKAYQKAR LCLHPDKLQQRGATLSQKYVADKAFSILQDAWAAFISQDVFFN" mobile_element 22524372..22524450 /note="source:CACAO_M_E14490_F322_scaffold_3 369 459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22524402..22524502) /note="source:CACAO_PIF_E119_scaffold_3 2560 2652" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(22524952..22530753) /locus_tag="TCM_029417" /note="dbxref CacaoGD:Thecc1EG029417" mRNA complement(join(22524952..22525551,22525882..22525980, 22526346..22526435,22528101..22528172,22528263..22528349, 22528452..22528583,22528956..22529027,22529147..22529227, 22529589..22529681,22530334..>22530361)) /locus_tag="TCM_029417" /product="Geranyl diphosphate synthase 1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29759.m000284" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041558t1" /inference="similar to AA sequence:ricco:29759.m000284" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc735t4; inference alignment:Newbler:10:TSA:cgbaP2_g07658t00001" mRNA complement(join(22524953..22525551,22525882..22525980, 22526346..22526435,22527228..22527360,22527911..22527996, 22528101..22528172,22528263..22528349,22528452..22528583, 22528956..22529027,22529147..22529227,22529589..22529681, 22530334..22530753)) /locus_tag="TCM_029417" /product="Geranyl diphosphate synthase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29759.m000284" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041558t1" /inference="similar to AA sequence:ricco:29759.m000284" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07658t00001" mRNA complement(join(22524953..22525551,22525882..22525980, 22526346..22526435,22527228..22527360,22527911..22527996, 22528101..22528172,22528263..22528349,22528452..22528583, 22528956..22529027,22529147..22529227,22529589..22529684, 22530334..22530753)) /locus_tag="TCM_029417" /product="Geranyl diphosphate synthase 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29759.m000284" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041558t1" /inference="similar to AA sequence:ricco:29759.m000284" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b028450t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g07658t00001" CDS complement(join(22525372..22525551,22525882..22525980, 22526346..22526435,22527228..22527360,22527911..22527996, 22528101..22528172,22528263..22528349,22528452..22528583, 22528956..22529027,22529147..22529227,22529589..22529681, 22530334..22530465)) /locus_tag="TCM_029417" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29759.m000284; paralog of Thecc1EG041558t1" /codon_start=1 /product="Geranyl diphosphate synthase 1 isoform 1" /protein_id="EOY27601.1" /db_xref="TAIR:AT2G34630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IHY6" /translation="MLFCRGFSRISRNPRTILLGFILSRPTGPSQSLLSNQYLNSTLK VCAGRETFSWSLSAFLGIGRQIHHQSSSIIEEQLDPFSLVADELSLLAKRLRSMVVAE VPKLASAAEYFFKLGVEGKRFRPTVLLLMATALNVHIPEPTAGGVGDTLTTDLRTRQQ SIAEITEMIHVASLLHDDVLDDADKRRGIGSLNAVMGNKLAVLAGDFLLSRACVSLAA LKNTEVVSLIATVVEHLVTGETMQMTTSSEQRCSMEYYMQKTYYKTASLISNSCKAIA LLAGQTAEVAMLAFEYGKHLGLAFQLIDDVLDFTGTSASLGKGSLSDIQHGIVTAPIL FAMEEFPQLHAIVYQGFDNPENVDIALEYLGKSDGIQRTRELAMKHANLAAAAIESLP ESNDEQVRKSRRALVDLTQRVIMRNK" CDS complement(join(22525372..22525551,22525882..22525980, 22526346..22526435,22528101..22528172,22528263..22528349, 22528452..22528583,22528956..22529027,22529147..22529227, 22529589..22529681,22530334..>22530360)) /locus_tag="TCM_029417" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29759.m000284; paralog of Thecc1EG041558t1" /codon_start=1 /product="Geranyl diphosphate synthase 1 isoform 3" /protein_id="EOY27603.1" /db_xref="TAIR:AT2G34630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IHY6" /translation="NQYLNSTLKVCAGRETFSWSLSAFLGIGRQIHHQSSSIIEEQLD PFSLVADELSLLAKRLRSMVVAEVPKLASAAEYFFKLGVEGKRFRPTVLLLMATALNV HIPEPTAGGVGDTLTTDLRTRQQSIAEITEMIHVASLLHDDVLDDADKRRGIGSLNAV MGNKLAVLAGDFLLSRACVSLAALKNTEGLAFQLIDDVLDFTGTSASLGKGSLSDIQH GIVTAPILFAMEEFPQLHAIVYQGFDNPENVDIALEYLGKSDGIQRTRELAMKHANLA AAAIESLPESNDEQVRKSRRALVDLTQRVIMRNK" CDS complement(join(22525372..22525551,22525882..22525980, 22526346..22526435,22527228..22527360,22527911..22527996, 22528101..22528172,22528263..22528349,22528452..22528583, 22528956..22529027,22529147..22529161)) /locus_tag="TCM_029417" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29759.m000284; paralog of Thecc1EG041558t1" /codon_start=1 /product="Geranyl diphosphate synthase 1 isoform 2" /protein_id="EOY27602.1" /db_xref="TAIR:AT2G34630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IHY6" /translation="MVVAEVPKLASAAEYFFKLGVEGKRFRPTVLLLMATALNVHIPE PTAGGVGDTLTTDLRTRQQSIAEITEMIHVASLLHDDVLDDADKRRGIGSLNAVMGNK LAVLAGDFLLSRACVSLAALKNTEVVSLIATVVEHLVTGETMQMTTSSEQRCSMEYYM QKTYYKTASLISNSCKAIALLAGQTAEVAMLAFEYGKHLGLAFQLIDDVLDFTGTSAS LGKGSLSDIQHGIVTAPILFAMEEFPQLHAIVYQGFDNPENVDIALEYLGKSDGIQRT RELAMKHANLAAAAIESLPESNDEQVRKSRRALVDLTQRVIMRNK" gene complement(22530701..22536216) /locus_tag="TCM_029418" /note="dbxref CacaoGD:Thecc1EG029418" mRNA complement(join(22530701..22531552,22531639..22531737, 22532059..22532148,22532349..22532481,22532995..22533080, 22533724..22533795,22534406..22534492,22534651..22534782, 22535179..22535250,22535442..22535540,22535926..22536216)) /locus_tag="TCM_029418" /product="Geranyl diphosphate synthase 1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005681001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029417t1" /inference="similar to AA sequence:ricco:29759.m000284" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5842t1" mRNA complement(join(22531104..22531552,22531639..22531737, 22532059..22532481,22532995..22533080,22533724..22533795, 22534406..22534492,22534651..22534782,22535179..22535250, 22535442..22535540,22535926..22536216)) /locus_tag="TCM_029418" /product="Geranyl diphosphate synthase 1, putative isoform 3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029417t1" /inference="similar to AA sequence:ricco:29759.m000284" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc844t15_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5842t1" mRNA complement(join(22531191..22531552,22531639..22531737, 22532059..22532481,22533724..22533795,22534406..22534492, 22534651..22534782,22535179..22535250,22535442..22535522, 22535926..22536185)) /locus_tag="TCM_029418" /product="Geranyl diphosphate synthase 1, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005681001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029417t3" /inference="similar to AA sequence:ricco:29759.m000284" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5842t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5842t1" mRNA complement(join(22531191..22531552,22531639..22531737, 22532059..22532148,22532349..22532481,22532995..22533080, 22533724..22533795,22534406..22534492,22534651..22534782, 22535179..22535250,22535442..22535522,22535926..22536185)) /locus_tag="TCM_029418" /product="Geranyl diphosphate synthase 1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005681001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029417t1" /inference="similar to AA sequence:ricco:29759.m000284" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5842t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5842t1" mRNA complement(join(22531191..22531552,22531639..22531737, 22532059..22532481,22532995..22533080,22533724..22533795, 22534406..22534492,22534651..22534782,22535179..22535250, 22535442..22535522,22535926..22536185)) /locus_tag="TCM_029418" /product="Geranyl diphosphate synthase 1, putative isoform 4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029417t1" /inference="similar to AA sequence:ricco:29759.m000284" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5842t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5842t1" CDS complement(join(22531373..22531552,22531639..22531737, 22532059..22532148,22532349..22532481,22532995..22533080, 22533724..22533795,22534406..22534492,22534651..22534782, 22535179..22535250,22535442..22535522,22535926..22536060)) /locus_tag="TCM_029418" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29759.m000284; paralog of Thecc1EG029417t1" /codon_start=1 /product="Geranyl diphosphate synthase 1, putative isoform 2" /protein_id="EOY27605.1" /db_xref="TAIR:AT2G34630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IHY6" /translation="MTILFSRVVSRISGTPKKTFFNCPQLCQALVFGTSCRSPTDSTP KDKVDPFSLVAHEMSLVSKRLRSSVVAKVPELASAAGYFFKEGVEGKRTCSVVLLLMA TAVDIHRPESPFCCIGDTWTIELRRRQQLIAEITEMIHVASLIHDDVLDDADTRRGIG SLSFVVGNKLAVLAGDFLLFRALRTLASLKNTEVVSLLVTAIENLVTGETMQMAATIE QRCSMEYYMQKTYYKTASLISNSCKAIALLSGQTPGVAKLAFEYGKNLGLAYQFIDDI LDFTGSSASLGKGSLSDIRLGIITAPILFATEEFPQLHAVIEQGFDDPANVDTALEYL RKSRGIQRTRELATKHASLAAAAIDSLPESCSMDVRKSRQALINLTQILTARNK" CDS complement(join(22531373..22531552,22531639..22531737, 22532059..22532148,22532349..22532481,22532995..22533080, 22533724..22533795,22534406..22534492,22534651..22534782, 22535179..22535250,22535442..22535540,22535926..22536060)) /locus_tag="TCM_029418" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29759.m000284; paralog of Thecc1EG029417t1" /codon_start=1 /product="Geranyl diphosphate synthase 1, putative isoform 1" /protein_id="EOY27604.1" /db_xref="TAIR:AT2G34630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IHY6" /translation="MTILFSRVVSRISGTPKKTFFNCPQLCQALVFGTSCRSPTDSTP KEDAVSQDKVDPFSLVAHEMSLVSKRLRSSVVAKVPELASAAGYFFKEGVEGKRTCSV VLLLMATAVDIHRPESPFCCIGDTWTIELRRRQQLIAEITEMIHVASLIHDDVLDDAD TRRGIGSLSFVVGNKLAVLAGDFLLFRALRTLASLKNTEVVSLLVTAIENLVTGETMQ MAATIEQRCSMEYYMQKTYYKTASLISNSCKAIALLSGQTPGVAKLAFEYGKNLGLAY QFIDDILDFTGSSASLGKGSLSDIRLGIITAPILFATEEFPQLHAVIEQGFDDPANVD TALEYLRKSRGIQRTRELATKHASLAAAAIDSLPESCSMDVRKSRQALINLTQILTAR NK" CDS complement(join(22532247..22532481,22532995..22533080, 22533724..22533795,22534406..22534492,22534651..22534782, 22535179..22535250,22535442..22535522,22535926..22536060)) /locus_tag="TCM_029418" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29759.m000284; paralog of Thecc1EG029417t1" /codon_start=1 /product="Geranyl diphosphate synthase 1, putative isoform 4" /protein_id="EOY27607.1" /db_xref="TAIR:AT2G34630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C5YID8" /translation="MTILFSRVVSRISGTPKKTFFNCPQLCQALVFGTSCRSPTDSTP KDKVDPFSLVAHEMSLVSKRLRSSVVAKVPELASAAGYFFKEGVEGKRTCSVVLLLMA TAVDIHRPESPFCCIGDTWTIELRRRQQLIAEITEMIHVASLIHDDVLDDADTRRGIG SLSFVVGNKLAVLAGDFLLFRALRTLASLKNTEVVSLLVTAIENLVTGETMQMAATIE QRCSMEYYMQKTYYKTASLISNSCKAIALLSGQTPGVAKLAFEYGKNLVCKFPKVILR DKKYVLSGTTYSGIILCIWPISL" CDS complement(join(22532247..22532481,22532995..22533080, 22533724..22533795,22534406..22534492,22534651..22534782, 22535179..22535250,22535442..22535540,22535926..22536060)) /locus_tag="TCM_029418" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29759.m000284; paralog of Thecc1EG029417t1" /codon_start=1 /product="Geranyl diphosphate synthase 1, putative isoform 3" /protein_id="EOY27606.1" /db_xref="TAIR:AT2G34630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IHY6" /translation="MTILFSRVVSRISGTPKKTFFNCPQLCQALVFGTSCRSPTDSTP KEDAVSQDKVDPFSLVAHEMSLVSKRLRSSVVAKVPELASAAGYFFKEGVEGKRTCSV VLLLMATAVDIHRPESPFCCIGDTWTIELRRRQQLIAEITEMIHVASLIHDDVLDDAD TRRGIGSLSFVVGNKLAVLAGDFLLFRALRTLASLKNTEVVSLLVTAIENLVTGETMQ MAATIEQRCSMEYYMQKTYYKTASLISNSCKAIALLSGQTPGVAKLAFEYGKNLVCKF PKVILRDKKYVLSGTTYSGIILCIWPISL" CDS complement(join(22532365..22532481,22533724..22533795, 22534406..22534492,22534651..22534782,22535179..22535250, 22535442..22535522,22535926..22536060)) /locus_tag="TCM_029418" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29759.m000284; paralog of Thecc1EG029417t3" /codon_start=1 /product="Geranyl diphosphate synthase 1, putative isoform 5" /protein_id="EOY27608.1" /db_xref="TAIR:AT2G34630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C5YID8" /translation="MTILFSRVVSRISGTPKKTFFNCPQLCQALVFGTSCRSPTDSTP KDKVDPFSLVAHEMSLVSKRLRSSVVAKVPELASAAGYFFKEGVEGKRTCSVVLLLMA TAVDIHRPESPFCCIGDTWTIELRRRQQLIAEITEMIHVASLIHDDVLDDADTRRGIG SLSFVVGNKLAVLAGDFLLFRALRTLASLKNTEHGVLYAKDILQDCIVDFKQLQGYCP SVWPNTWSCKVGF" mobile_element 22533650..22533731 /note="source:CACAO_M_E24018_F98_scaffold_4 2000 2083" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22534467..22538699) /locus_tag="TCM_029419" /note="dbxref CacaoGD:Thecc1EG029419" mRNA complement(join(22534467..22534492,22534651..22534780, 22536487..22537688)) /locus_tag="TCM_029419" /product="MTERF-like protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29599.m000171" /inference="similar to AA sequence:Phytozome:POPTR_0011s02560.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc720t13; alternateUTRof:Thecc1EG029419t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc718t6_C1" mRNA complement(join(22534649..22534782,22535179..22535250, 22535442..22535540,22536488..22537665)) /locus_tag="TCM_029419" /product="MTERF-like protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29599.m000171" /inference="similar to AA sequence:Phytozome:POPTR_0011s02560.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc718t5; alternateUTRof:Thecc1EG029419t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc718t6_C1" mRNA complement(join(22534757..22534782,22535179..22535332, 22535442..22535540,22536488..22537688)) /locus_tag="TCM_029419" /product="MTERF-like protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29599.m000171" /inference="similar to AA sequence:Phytozome:POPTR_0011s02560.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc720t7; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc718t6_C1" mRNA complement(join(22535261..22535332,22535442..22535540, 22536488..22537584,22538169..22538559,22538675..22538699)) /locus_tag="TCM_029419" /product="Mitochondrial transcription termination factor family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29599.m000171" /inference="similar to AA sequence:Phytozome:POPTR_0011s02560.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc718t6_C1" mRNA complement(join(22535439..22535522,22536488..22537688)) /locus_tag="TCM_029419" /product="MTERF-like protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29599.m000171" /inference="similar to AA sequence:Phytozome:POPTR_0011s02560.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc720t11_C1; alternateUTRof:Thecc1EG029419t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc718t6_C1" mobile_element 22536250..22536323 /note="source:scaffold_9_CACTA_0943 9051 9122" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(22536493..22537584,22538169..22538204)) /locus_tag="TCM_029419" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Mitochondrial transcription termination factor family protein isoform 1" /protein_id="EOY27609.1" /db_xref="Phytozome:POPTR_0011s02560.1" /db_xref="TAIR:AT2G34620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2L8W8" /translation="MDYKNSAESLILEGKDGSSQEIVHPSHLKDLALANQLQPNRHVS LSHNIQIRPIRSVFGQPLRKPSLCLSTMSAAAATALQSSLCISSQKPSSSPGNSQQPN SLSAAKPKSLLHKHPLYSSTHQNLSLQIKEKILCLEIMGIDSGKALSLNPSLHTTSLH SIHSIMSFLQSKGIHQKDFPRIFGMCPKILTSNVKADLNPVFSFLSQDLHVPENNYRK VINKCPRLLTSSVRDRLKPALFYLQRLGFKDLGALAYQDPVLLVSSVEHTLIPKLKFL ESIGFSTNEAKSMVLRCPGLFTFSIENNYKPKFEYFNEEMKGELEELKEFPQFFAFSL EKRIKPRHIEVMQSGVKLVLANMLRSTDEEFKELLREGGNR" CDS complement(22536493..22537407) /locus_tag="TCM_029419" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="MTERF-like protein isoform 2" /protein_id="EOY27610.1" /db_xref="Phytozome:POPTR_0011s02560.1" /db_xref="TAIR:AT2G34620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2L8W8" /translation="MSAAAATALQSSLCISSQKPSSSPGNSQQPNSLSAAKPKSLLHK HPLYSSTHQNLSLQIKEKILCLEIMGIDSGKALSLNPSLHTTSLHSIHSIMSFLQSKG IHQKDFPRIFGMCPKILTSNVKADLNPVFSFLSQDLHVPENNYRKVINKCPRLLTSSV RDRLKPALFYLQRLGFKDLGALAYQDPVLLVSSVEHTLIPKLKFLESIGFSTNEAKSM VLRCPGLFTFSIENNYKPKFEYFNEEMKGELEELKEFPQFFAFSLEKRIKPRHIEVMQ SGVKLVLANMLRSTDEEFKELLREGGNR" CDS complement(22536493..22537407) /locus_tag="TCM_029419" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="MTERF-like protein isoform 2" /protein_id="EOY27611.1" /db_xref="Phytozome:POPTR_0011s02560.1" /db_xref="TAIR:AT2G34620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2L8W8" /translation="MSAAAATALQSSLCISSQKPSSSPGNSQQPNSLSAAKPKSLLHK HPLYSSTHQNLSLQIKEKILCLEIMGIDSGKALSLNPSLHTTSLHSIHSIMSFLQSKG IHQKDFPRIFGMCPKILTSNVKADLNPVFSFLSQDLHVPENNYRKVINKCPRLLTSSV RDRLKPALFYLQRLGFKDLGALAYQDPVLLVSSVEHTLIPKLKFLESIGFSTNEAKSM VLRCPGLFTFSIENNYKPKFEYFNEEMKGELEELKEFPQFFAFSLEKRIKPRHIEVMQ SGVKLVLANMLRSTDEEFKELLREGGNR" CDS complement(22536493..22537407) /locus_tag="TCM_029419" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="MTERF-like protein isoform 2" /protein_id="EOY27612.1" /db_xref="Phytozome:POPTR_0011s02560.1" /db_xref="TAIR:AT2G34620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2L8W8" /translation="MSAAAATALQSSLCISSQKPSSSPGNSQQPNSLSAAKPKSLLHK HPLYSSTHQNLSLQIKEKILCLEIMGIDSGKALSLNPSLHTTSLHSIHSIMSFLQSKG IHQKDFPRIFGMCPKILTSNVKADLNPVFSFLSQDLHVPENNYRKVINKCPRLLTSSV RDRLKPALFYLQRLGFKDLGALAYQDPVLLVSSVEHTLIPKLKFLESIGFSTNEAKSM VLRCPGLFTFSIENNYKPKFEYFNEEMKGELEELKEFPQFFAFSLEKRIKPRHIEVMQ SGVKLVLANMLRSTDEEFKELLREGGNR" CDS complement(22536493..22537407) /locus_tag="TCM_029419" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="MTERF-like protein isoform 2" /protein_id="EOY27613.1" /db_xref="Phytozome:POPTR_0011s02560.1" /db_xref="TAIR:AT2G34620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2L8W8" /translation="MSAAAATALQSSLCISSQKPSSSPGNSQQPNSLSAAKPKSLLHK HPLYSSTHQNLSLQIKEKILCLEIMGIDSGKALSLNPSLHTTSLHSIHSIMSFLQSKG IHQKDFPRIFGMCPKILTSNVKADLNPVFSFLSQDLHVPENNYRKVINKCPRLLTSSV RDRLKPALFYLQRLGFKDLGALAYQDPVLLVSSVEHTLIPKLKFLESIGFSTNEAKSM VLRCPGLFTFSIENNYKPKFEYFNEEMKGELEELKEFPQFFAFSLEKRIKPRHIEVMQ SGVKLVLANMLRSTDEEFKELLREGGNR" gene complement(22537819..22547094) /locus_tag="TCM_029420" /note="dbxref CacaoGD:Thecc1EG029420" mRNA complement(join(22537819..22538054,22538239..22538795, 22539813..22539921,22540817..22541070,22542261..22544043, 22544122..22544465,22545236..22545359,22545639..22545888, 22546944..22547094)) /locus_tag="TCM_029420" /product="IAP-like protein 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29599.m000170" /inference="similar to AA sequence:ricco:29599.m000170" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6017t3" mRNA complement(join(22538083..22538559,22538675..22538795, 22539813..22539921,22540817..22541070,22542261..22544043, 22544122..22544465,22545236..22545359,22545639..22545888, 22546944..22547083)) /locus_tag="TCM_029420" /product="IAP-like protein 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29599.m000170" /inference="similar to AA sequence:ricco:29599.m000170" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6017t3; alternateUTRof:Thecc1EG029420t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6017t3" mRNA complement(join(22538083..22538795,22539809..22539921, 22540817..22541070,22542261..22544043,22544122..22544465, 22545236..22545359,22545639..22545888,22546944..22547083)) /locus_tag="TCM_029420" /product="IAP-like protein 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29599.m000170" /inference="similar to AA sequence:ricco:29599.m000170" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6017t1; alternateUTRof:Thecc1EG029420t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6017t3" mRNA complement(join(22538530..22539836,22542266..22544043, 22544122..22544465,22545236..22545359,22545639..22545888, 22546944..22546973)) /locus_tag="TCM_029420" /product="IAP-like protein 1 isoform 6" /inference="alignment:exonerate- protein:2:ricco:29599.m000170" /inference="similar to AA sequence:ricco:29599.m000170" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc674t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6017t3" mRNA complement(join(22539050..22539812,22542356..22544043, 22544122..22544465,22545236..22545359,22545639..22545888, 22546944..22546969)) /locus_tag="TCM_029420" /product="IAP-like protein 1 isoform 7" /inference="alignment:exonerate- protein:2:ricco:29599.m000170" /inference="similar to AA sequence:ricco:29599.m000170" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc670t20; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6017t3" mRNA complement(join(22539620..22539921,22540817..22541070, 22542261..22544043,22544122..22544465,22545236..22545359, 22545639..22545888,22546944..22547083)) /locus_tag="TCM_029420" /product="IAP-like protein 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29599.m000170" /inference="similar to AA sequence:ricco:29599.m000170" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6017t4; alternateUTRof:Thecc1EG029420t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6017t3" mRNA complement(join(22539620..22539921,22540817..22541073, 22542261..22544043,22544122..22544465,22545236..22545359, 22545639..22545888,22546944..22547083)) /locus_tag="TCM_029420" /product="IAP-like protein 1 isoform 5" /inference="alignment:exonerate- protein:2:ricco:29599.m000170" /inference="similar to AA sequence:ricco:29599.m000170" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6017t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6017t3" CDS complement(join(22539809..22539812,22542356..22544043, 22544122..22544465,22545236..22545323)) /locus_tag="TCM_029420" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:29599.m000170" /codon_start=1 /product="IAP-like protein 1 isoform 7" /protein_id="EOY27620.1" /db_xref="TAIR:AT1G17210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHI0" /translation="MNIDVDKIACETCGACLHFASSPSWAASEAEDAGVAFSKQLDVG HKVACPWRGNSCQESLVQFPPAPQSALIAGYKDRCDGLLQFQSLPVIAASAVEHMRVS WGPQVDRLLSQLQNFMTELESRSESIQELDNSRDAAFCLYYRSQKLISLCGWEPRWLL NVQDCEEHSAQSARNGCSFGPSAAQVHLSHDPGPSKHASAKDSGKNKFLVMESRSEFR SPLLDCSLCGAAVRILDFLTVPRPARVAPNNIDIPDTSKKMGLTRGVSAASGIGGWLA ADDPEKEQTEDRDEVGTTDERKLMQKTDVDLNLTMAGGLSFNQLGKTMTSRNMNDADM GRDLMIGQPSGSEVGDRAASYESRGPSSRKRSLEIGASSDDRPQLRVQQADSVEGTVI DRDGDEVTDGRQYSAGPSKRARDSDIFDTYCSPYPRDSSDAGPSHSIGFETYADGSRV ALFRQGSDHVIGIPSTRDSTRASSVIAMDTVCHSADDDSMESVENYRGDVDDIHFPSS STYGHLDMNDTSELNYSNQAQQSICFQPAAEAVPGEMGISSTNDGEEIFNAETVTAQA RDGLSFGISGGSVGMCASHEAEIHGADVSVHRTASVVGDVEPRIEDAENQGQTGESAP DPGLMDEVVPDEINREDPHGDSQEMLSRSLGRADSGSKVDGSAKAESVESGEKISQSC KLVPDNSAHPSLSCNANLYSGNETP" CDS complement(join(22539830..22539836,22542266..22544043, 22544122..22544465,22545236..22545323)) /locus_tag="TCM_029420" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29599.m000170" /codon_start=1 /product="IAP-like protein 1 isoform 6" /protein_id="EOY27619.1" /db_xref="TAIR:AT1G17210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHI0" /translation="MNIDVDKIACETCGACLHFASSPSWAASEAEDAGVAFSKQLDVG HKVACPWRGNSCQESLVQFPPAPQSALIAGYKDRCDGLLQFQSLPVIAASAVEHMRVS WGPQVDRLLSQLQNFMTELESRSESIQELDNSRDAAFCLYYRSQKLISLCGWEPRWLL NVQDCEEHSAQSARNGCSFGPSAAQVHLSHDPGPSKHASAKDSGKNKFLVMESRSEFR SPLLDCSLCGAAVRILDFLTVPRPARVAPNNIDIPDTSKKMGLTRGVSAASGIGGWLA ADDPEKEQTEDRDEVGTTDERKLMQKTDVDLNLTMAGGLSFNQLGKTMTSRNMNDADM GRDLMIGQPSGSEVGDRAASYESRGPSSRKRSLEIGASSDDRPQLRVQQADSVEGTVI DRDGDEVTDGRQYSAGPSKRARDSDIFDTYCSPYPRDSSDAGPSHSIGFETYADGSRV ALFRQGSDHVIGIPSTRDSTRASSVIAMDTVCHSADDDSMESVENYRGDVDDIHFPSS STYGHLDMNDTSELNYSNQAQQSICFQPAAEAVPGEMGISSTNDGEEIFNAETVTAQA RDGLSFGISGGSVGMCASHEAEIHGADVSVHRTASVVGDVEPRIEDAENQGQTGESAP DPGLMDEVVPDEINREDPHGDSQEMLSRSLGRADSGSKVDGSAKAESVESGEKISQSC KLVPDNSAHPSLSCNANLYSGNETPKKEVTNAGKSSSINNCPYPDPESDYAVAHGA" CDS complement(join(22539850..22539921,22540817..22541070, 22542261..22544043,22544122..22544465,22545236..22545359, 22545639..22545888,22546944..22546999)) /locus_tag="TCM_029420" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29599.m000170" /codon_start=1 /product="IAP-like protein 1 isoform 1" /protein_id="EOY27614.1" /db_xref="TAIR:AT1G17210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHI0" /translation="MREEVISSGGTIDPTPAASSAGASSPAVPTNVGSIDWSGHGHNS KAASQSFVGSQAPWTSLSTSAGGSALGSSRPSCRPWERGDLLRRLATFKPINWFGKPK VASSLACAQRGWMNIDVDKIACETCGACLHFASSPSWAASEAEDAGVAFSKQLDVGHK VACPWRGNSCQESLVQFPPAPQSALIAGYKDRCDGLLQFQSLPVIAASAVEHMRVSWG PQVDRLLSQLQNFMTELESRSESIQELDNSRDAAFCLYYRSQKLISLCGWEPRWLLNV QDCEEHSAQSARNGCSFGPSAAQVHLSHDPGPSKHASAKDSGKNKFLVMESRSEFRSP LLDCSLCGAAVRILDFLTVPRPARVAPNNIDIPDTSKKMGLTRGVSAASGIGGWLAAD DPEKEQTEDRDEVGTTDERKLMQKTDVDLNLTMAGGLSFNQLGKTMTSRNMNDADMGR DLMIGQPSGSEVGDRAASYESRGPSSRKRSLEIGASSDDRPQLRVQQADSVEGTVIDR DGDEVTDGRQYSAGPSKRARDSDIFDTYCSPYPRDSSDAGPSHSIGFETYADGSRVAL FRQGSDHVIGIPSTRDSTRASSVIAMDTVCHSADDDSMESVENYRGDVDDIHFPSSST YGHLDMNDTSELNYSNQAQQSICFQPAAEAVPGEMGISSTNDGEEIFNAETVTAQARD GLSFGISGGSVGMCASHEAEIHGADVSVHRTASVVGDVEPRIEDAENQGQTGESAPDP GLMDEVVPDEINREDPHGDSQEMLSRSLGRADSGSKVDGSAKAESVESGEKISQSCKL VPDNSAHPSLSCNANLYSGNETPKKEVTNAGKSSSINNCPYPDPESDYAVAHGIGPPK GESNYEEAIEFDPIIHHNQFCPWVNGNVAAAGCSNSGSSTSADVVALCGWQLTLDALD ALRSLGHIPVQTVQSESAASLHKDDHQTPGKKLLRRHSMNKSHGQH" CDS complement(join(22539850..22539921,22540817..22541070, 22542261..22544043,22544122..22544465,22545236..22545359, 22545639..22545888,22546944..22546999)) /locus_tag="TCM_029420" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29599.m000170" /codon_start=1 /product="IAP-like protein 1 isoform 1" /protein_id="EOY27615.1" /db_xref="TAIR:AT1G17210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHI0" /translation="MREEVISSGGTIDPTPAASSAGASSPAVPTNVGSIDWSGHGHNS KAASQSFVGSQAPWTSLSTSAGGSALGSSRPSCRPWERGDLLRRLATFKPINWFGKPK VASSLACAQRGWMNIDVDKIACETCGACLHFASSPSWAASEAEDAGVAFSKQLDVGHK VACPWRGNSCQESLVQFPPAPQSALIAGYKDRCDGLLQFQSLPVIAASAVEHMRVSWG PQVDRLLSQLQNFMTELESRSESIQELDNSRDAAFCLYYRSQKLISLCGWEPRWLLNV QDCEEHSAQSARNGCSFGPSAAQVHLSHDPGPSKHASAKDSGKNKFLVMESRSEFRSP LLDCSLCGAAVRILDFLTVPRPARVAPNNIDIPDTSKKMGLTRGVSAASGIGGWLAAD DPEKEQTEDRDEVGTTDERKLMQKTDVDLNLTMAGGLSFNQLGKTMTSRNMNDADMGR DLMIGQPSGSEVGDRAASYESRGPSSRKRSLEIGASSDDRPQLRVQQADSVEGTVIDR DGDEVTDGRQYSAGPSKRARDSDIFDTYCSPYPRDSSDAGPSHSIGFETYADGSRVAL FRQGSDHVIGIPSTRDSTRASSVIAMDTVCHSADDDSMESVENYRGDVDDIHFPSSST YGHLDMNDTSELNYSNQAQQSICFQPAAEAVPGEMGISSTNDGEEIFNAETVTAQARD GLSFGISGGSVGMCASHEAEIHGADVSVHRTASVVGDVEPRIEDAENQGQTGESAPDP GLMDEVVPDEINREDPHGDSQEMLSRSLGRADSGSKVDGSAKAESVESGEKISQSCKL VPDNSAHPSLSCNANLYSGNETPKKEVTNAGKSSSINNCPYPDPESDYAVAHGIGPPK GESNYEEAIEFDPIIHHNQFCPWVNGNVAAAGCSNSGSSTSADVVALCGWQLTLDALD ALRSLGHIPVQTVQSESAASLHKDDHQTPGKKLLRRHSMNKSHGQH" CDS complement(join(22539850..22539921,22540817..22541070, 22542261..22544043,22544122..22544465,22545236..22545359, 22545639..22545888,22546944..22546999)) /locus_tag="TCM_029420" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29599.m000170" /codon_start=1 /product="IAP-like protein 1 isoform 1" /protein_id="EOY27616.1" /db_xref="TAIR:AT1G17210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHI0" /translation="MREEVISSGGTIDPTPAASSAGASSPAVPTNVGSIDWSGHGHNS KAASQSFVGSQAPWTSLSTSAGGSALGSSRPSCRPWERGDLLRRLATFKPINWFGKPK VASSLACAQRGWMNIDVDKIACETCGACLHFASSPSWAASEAEDAGVAFSKQLDVGHK VACPWRGNSCQESLVQFPPAPQSALIAGYKDRCDGLLQFQSLPVIAASAVEHMRVSWG PQVDRLLSQLQNFMTELESRSESIQELDNSRDAAFCLYYRSQKLISLCGWEPRWLLNV QDCEEHSAQSARNGCSFGPSAAQVHLSHDPGPSKHASAKDSGKNKFLVMESRSEFRSP LLDCSLCGAAVRILDFLTVPRPARVAPNNIDIPDTSKKMGLTRGVSAASGIGGWLAAD DPEKEQTEDRDEVGTTDERKLMQKTDVDLNLTMAGGLSFNQLGKTMTSRNMNDADMGR DLMIGQPSGSEVGDRAASYESRGPSSRKRSLEIGASSDDRPQLRVQQADSVEGTVIDR DGDEVTDGRQYSAGPSKRARDSDIFDTYCSPYPRDSSDAGPSHSIGFETYADGSRVAL FRQGSDHVIGIPSTRDSTRASSVIAMDTVCHSADDDSMESVENYRGDVDDIHFPSSST YGHLDMNDTSELNYSNQAQQSICFQPAAEAVPGEMGISSTNDGEEIFNAETVTAQARD GLSFGISGGSVGMCASHEAEIHGADVSVHRTASVVGDVEPRIEDAENQGQTGESAPDP GLMDEVVPDEINREDPHGDSQEMLSRSLGRADSGSKVDGSAKAESVESGEKISQSCKL VPDNSAHPSLSCNANLYSGNETPKKEVTNAGKSSSINNCPYPDPESDYAVAHGIGPPK GESNYEEAIEFDPIIHHNQFCPWVNGNVAAAGCSNSGSSTSADVVALCGWQLTLDALD ALRSLGHIPVQTVQSESAASLHKDDHQTPGKKLLRRHSMNKSHGQH" CDS complement(join(22539850..22539921,22540817..22541070, 22542261..22544043,22544122..22544465,22545236..22545359, 22545639..22545888,22546944..22546999)) /locus_tag="TCM_029420" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29599.m000170" /codon_start=1 /product="IAP-like protein 1 isoform 1" /protein_id="EOY27617.1" /db_xref="TAIR:AT1G17210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHI0" /translation="MREEVISSGGTIDPTPAASSAGASSPAVPTNVGSIDWSGHGHNS KAASQSFVGSQAPWTSLSTSAGGSALGSSRPSCRPWERGDLLRRLATFKPINWFGKPK VASSLACAQRGWMNIDVDKIACETCGACLHFASSPSWAASEAEDAGVAFSKQLDVGHK VACPWRGNSCQESLVQFPPAPQSALIAGYKDRCDGLLQFQSLPVIAASAVEHMRVSWG PQVDRLLSQLQNFMTELESRSESIQELDNSRDAAFCLYYRSQKLISLCGWEPRWLLNV QDCEEHSAQSARNGCSFGPSAAQVHLSHDPGPSKHASAKDSGKNKFLVMESRSEFRSP LLDCSLCGAAVRILDFLTVPRPARVAPNNIDIPDTSKKMGLTRGVSAASGIGGWLAAD DPEKEQTEDRDEVGTTDERKLMQKTDVDLNLTMAGGLSFNQLGKTMTSRNMNDADMGR DLMIGQPSGSEVGDRAASYESRGPSSRKRSLEIGASSDDRPQLRVQQADSVEGTVIDR DGDEVTDGRQYSAGPSKRARDSDIFDTYCSPYPRDSSDAGPSHSIGFETYADGSRVAL FRQGSDHVIGIPSTRDSTRASSVIAMDTVCHSADDDSMESVENYRGDVDDIHFPSSST YGHLDMNDTSELNYSNQAQQSICFQPAAEAVPGEMGISSTNDGEEIFNAETVTAQARD GLSFGISGGSVGMCASHEAEIHGADVSVHRTASVVGDVEPRIEDAENQGQTGESAPDP GLMDEVVPDEINREDPHGDSQEMLSRSLGRADSGSKVDGSAKAESVESGEKISQSCKL VPDNSAHPSLSCNANLYSGNETPKKEVTNAGKSSSINNCPYPDPESDYAVAHGIGPPK GESNYEEAIEFDPIIHHNQFCPWVNGNVAAAGCSNSGSSTSADVVALCGWQLTLDALD ALRSLGHIPVQTVQSESAASLHKDDHQTPGKKLLRRHSMNKSHGQH" CDS complement(join(22539850..22539921,22540817..22541073, 22542261..22544043,22544122..22544465,22545236..22545359, 22545639..22545888,22546944..22546999)) /locus_tag="TCM_029420" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29599.m000170" /codon_start=1 /product="IAP-like protein 1 isoform 5" /protein_id="EOY27618.1" /db_xref="TAIR:AT1G17210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHI0" /translation="MREEVISSGGTIDPTPAASSAGASSPAVPTNVGSIDWSGHGHNS KAASQSFVGSQAPWTSLSTSAGGSALGSSRPSCRPWERGDLLRRLATFKPINWFGKPK VASSLACAQRGWMNIDVDKIACETCGACLHFASSPSWAASEAEDAGVAFSKQLDVGHK VACPWRGNSCQESLVQFPPAPQSALIAGYKDRCDGLLQFQSLPVIAASAVEHMRVSWG PQVDRLLSQLQNFMTELESRSESIQELDNSRDAAFCLYYRSQKLISLCGWEPRWLLNV QDCEEHSAQSARNGCSFGPSAAQVHLSHDPGPSKHASAKDSGKNKFLVMESRSEFRSP LLDCSLCGAAVRILDFLTVPRPARVAPNNIDIPDTSKKMGLTRGVSAASGIGGWLAAD DPEKEQTEDRDEVGTTDERKLMQKTDVDLNLTMAGGLSFNQLGKTMTSRNMNDADMGR DLMIGQPSGSEVGDRAASYESRGPSSRKRSLEIGASSDDRPQLRVQQADSVEGTVIDR DGDEVTDGRQYSAGPSKRARDSDIFDTYCSPYPRDSSDAGPSHSIGFETYADGSRVAL FRQGSDHVIGIPSTRDSTRASSVIAMDTVCHSADDDSMESVENYRGDVDDIHFPSSST YGHLDMNDTSELNYSNQAQQSICFQPAAEAVPGEMGISSTNDGEEIFNAETVTAQARD GLSFGISGGSVGMCASHEAEIHGADVSVHRTASVVGDVEPRIEDAENQGQTGESAPDP GLMDEVVPDEINREDPHGDSQEMLSRSLGRADSGSKVDGSAKAESVESGEKISQSCKL VPDNSAHPSLSCNANLYSGNETPKKEVTNAGKSSSINNCPYPDPESDYAVAHGIVGPP KGESNYEEAIEFDPIIHHNQFCPWVNGNVAAAGCSNSGSSTSADVVALCGWQLTLDAL DALRSLGHIPVQTVQSESAASLHKDDHQTPGKKLLRRHSMNKSHGQH" gene complement(22547439..22554257) /locus_tag="TCM_029422" /note="dbxref CacaoGD:Thecc1EG029422" mRNA complement(join(22547439..22547763,22548322..22548400, 22548674..22548748,22548873..22548929,22549386..22549502, 22549959..22550084,22550171..22550290,22550472..22550561, 22551074..22551199,22551286..22551339,22551669..22551749, 22551846..22551953,22552365..22552427,22553454..22554257)) /locus_tag="TCM_029422" /product="CBL-interacting protein kinase 23 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g05860.1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021541001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005054t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021541001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6007t5; inference alignment:Newbler:10:TSA:cgbaB_g04814t00001" mRNA complement(join(22547439..22548400,22548674..22548748, 22548873..22548929,22549386..22549502,22549959..22550084, 22550171..22550290,22550472..22550561,22551074..22551199, 22551286..22551339,22551669..22551749,22551846..22551953, 22552093..22552164,22552365..22552427,22553454..22554257)) /locus_tag="TCM_029422" /product="CBL-interacting protein kinase 23 isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021541001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005054t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021541001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:PASA:2:TSA:puevd3b028455t1a4; inference alignment:Newbler:10:TSA:cgbaB_g04814t00001" mRNA complement(join(22547439..22547763,22548322..22548400, 22548674..22548770,22548873..22548929,22549386..22549502, 22549959..22550084,22550171..22550290,22550472..22550561, 22551074..22551199,22551286..22551339,22551669..22551749, 22551846..22551953,22552093..22552164,22552365..22552427, 22553454..22554257)) /locus_tag="TCM_029422" /product="CBL-interacting protein kinase 23 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021541001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005054t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021541001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b028455t1a2; inference alignment:Newbler:10:TSA:cgbaB_g04814t00001" mRNA complement(join(22547439..22547763,22548322..22548400, 22548674..22548748,22548873..22548929,22549386..22549502, 22549959..22550084,22550171..22550290,22550472..22550561, 22551074..22551199,22551286..22551339,22551669..22551749, 22551846..22551953,22552093..22552164,22552365..22552430, 22553454..22554257)) /locus_tag="TCM_029422" /product="CBL-interacting protein kinase 23 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g05860.1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021541001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005054t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021541001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6007t2; inference alignment:Newbler:10:TSA:cgbaB_g04814t00001" mRNA complement(join(22547453..22547763,22548322..22548400, 22548674..22548748,22548873..22548929,22549386..22549502, 22549959..22550084,22550171..22550290,22550472..22550561, 22551074..22551199,22551286..22551339,22551669..22551749, 22551846..22551953,22552093..22552164,22552365..22552427, 22553454..22554126)) /locus_tag="TCM_029422" /product="CBL-interacting protein kinase 23 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021541001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005054t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021541001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04814t00001" CDS complement(join(22547732..22547763,22548322..22548400, 22548674..22548748,22548873..22548929,22549386..22549502, 22549959..22550084,22550171..22550290,22550472..22550561, 22551074..22551199,22551286..22551339,22551669..22551749, 22551846..22551953,22552365..22552427,22553454..22553633)) /locus_tag="TCM_029422" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG005054t1" /codon_start=1 /product="CBL-interacting protein kinase 23 isoform 4" /protein_id="EOY27624.1" /db_xref="Phytozome:GSVIVT01021541001" /db_xref="TAIR:AT1G30270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VD3" /translation="MAARTSAGTRTRVGKYELGRTLGEGTFAKVKFARNIETEQNVAI KILDKEKVLKHKMIGQIKREISTMKLIRHPNVIHMYEASRGRLKEDEARKYFQQLINA VDYCHSRGVYHRDLKPENLLLDANGVLKISDFGLSALPQQVREDGLLHTTCGTPNYVA PEVINNKGYDGARADLWSCGVILFVLMAGYLPFEDSNLTALYKKIFKADFNCPPWFSS SAKKLIKRILDPNPLTRITIPEIIENEWFKKGYIPPRFEQADVSLDDVDVIFNESGDT QNLVVERREEGPRVPATMNAFELISTSQGLNLSSLFEKQMGLVKRETRFTSKCPANEI ISKIEEAAMPLGFDVKKNNYKMKLLGEKTGRKGHLAVTTEIFQVAPSLCMVELRKSGG DTLEFHKFYNNLSTGLKDIVWKTAEEGKVEEKDGAAAGSAPSR" CDS complement(join(22547732..22547763,22548322..22548400, 22548674..22548748,22548873..22548929,22549386..22549502, 22549959..22550084,22550171..22550290,22550472..22550561, 22551074..22551199,22551286..22551339,22551669..22551749, 22551846..22551953,22552093..22552164,22552365..22552427, 22553454..22553633)) /locus_tag="TCM_029422" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005054t1" /codon_start=1 /product="CBL-interacting protein kinase 23 isoform 1" /protein_id="EOY27621.1" /db_xref="Phytozome:GSVIVT01021541001" /db_xref="TAIR:AT1G30270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VD3" /translation="MAARTSAGTRTRVGKYELGRTLGEGTFAKVKFARNIETEQNVAI KILDKEKVLKHKMIGQIKREISTMKLIRHPNVIHMYEVMASKTKIYIVLEFVTGGELF DKIASRGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDANGVLKISDFGL SALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGARADLWSCGVILFVLMAGYLPFE DSNLTALYKKIFKADFNCPPWFSSSAKKLIKRILDPNPLTRITIPEIIENEWFKKGYI PPRFEQADVSLDDVDVIFNESGDTQNLVVERREEGPRVPATMNAFELISTSQGLNLSS LFEKQMGLVKRETRFTSKCPANEIISKIEEAAMPLGFDVKKNNYKMKLLGEKTGRKGH LAVTTEIFQVAPSLCMVELRKSGGDTLEFHKFYNNLSTGLKDIVWKTAEEGKVEEKDG AAAGSAPSR" CDS complement(join(22547732..22547763,22548322..22548400, 22548674..22548748,22548873..22548929,22549386..22549502, 22549959..22550084,22550171..22550290,22550472..22550561, 22551074..22551199,22551286..22551339,22551669..22551749, 22551846..22551953,22552093..22552164,22552365..22552430, 22553454..22553633)) /locus_tag="TCM_029422" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005054t1" /codon_start=1 /product="CBL-interacting protein kinase 23 isoform 3" /protein_id="EOY27623.1" /db_xref="Phytozome:GSVIVT01021541001" /db_xref="TAIR:AT1G30270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VD3" /translation="MAARTSAGTRTRVGKYELGRTLGEGTFAKVKFARNIETEQNVAI KILDKEKVLKHKMIGQQIKREISTMKLIRHPNVIHMYEVMASKTKIYIVLEFVTGGEL FDKIASRGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDANGVLKISDFG LSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGARADLWSCGVILFVLMAGYLPF EDSNLTALYKKIFKADFNCPPWFSSSAKKLIKRILDPNPLTRITIPEIIENEWFKKGY IPPRFEQADVSLDDVDVIFNESGDTQNLVVERREEGPRVPATMNAFELISTSQGLNLS SLFEKQMGLVKRETRFTSKCPANEIISKIEEAAMPLGFDVKKNNYKMKLLGEKTGRKG HLAVTTEIFQVAPSLCMVELRKSGGDTLEFHKFYNNLSTGLKDIVWKTAEEGKVEEKD GAAAGSAPSR" CDS complement(join(22548317..22548400,22548674..22548748, 22548873..22548929,22549386..22549502,22549959..22550084, 22550171..22550290,22550472..22550561,22551074..22551199, 22551286..22551339,22551669..22551749,22551846..22551953, 22552093..22552164,22552365..22552427,22553454..22553633)) /locus_tag="TCM_029422" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG005054t1" /codon_start=1 /product="CBL-interacting protein kinase 23 isoform 6" /protein_id="EOY27626.1" /db_xref="Phytozome:GSVIVT01021541001" /db_xref="TAIR:AT1G30270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VD3" /translation="MAARTSAGTRTRVGKYELGRTLGEGTFAKVKFARNIETEQNVAI KILDKEKVLKHKMIGQIKREISTMKLIRHPNVIHMYEVMASKTKIYIVLEFVTGGELF DKIASRGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDANGVLKISDFGL SALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGARADLWSCGVILFVLMAGYLPFE DSNLTALYKKIFKADFNCPPWFSSSAKKLIKRILDPNPLTRITIPEIIENEWFKKGYI PPRFEQADVSLDDVDVIFNESGDTQNLVVERREEGPRVPATMNAFELISTSQGLNLSS LFEKQMGLVKRETRFTSKCPANEIISKIEEAAMPLGFDVKKNNYKMKLLGEKTGRKGH LAVTTEIFQVAPSLCMVELRKSGGDTLEFHKFYNNLSTGLKDIVWKTAEEGKVEEKDG " CDS complement(join(22548714..22548770,22548873..22548929, 22549386..22549502,22549959..22550084,22550171..22550290, 22550472..22550561,22551074..22551199,22551286..22551339, 22551669..22551749,22551846..22551953,22552093..22552164, 22552365..22552427,22553454..22553633)) /locus_tag="TCM_029422" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005054t1" /codon_start=1 /product="CBL-interacting protein kinase 23 isoform 2" /protein_id="EOY27622.1" /db_xref="Phytozome:GSVIVT01021541001" /db_xref="TAIR:AT1G30270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VD3" /translation="MAARTSAGTRTRVGKYELGRTLGEGTFAKVKFARNIETEQNVAI KILDKEKVLKHKMIGQIKREISTMKLIRHPNVIHMYEVMASKTKIYIVLEFVTGGELF DKIASRGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDANGVLKISDFGL SALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGARADLWSCGVILFVLMAGYLPFE DSNLTALYKKIFKADFNCPPWFSSSAKKLIKRILDPNPLTRITIPEIIENEWFKKGYI PPRFEQADVSLDDVDVIFNESGDTQNLVVERREEGPRVPATMNAFELISTSQGLNLSS LFEKQMGLVKRETRFTSKCPANEIISKIEEAAMPLGFDVKKNNYKMKLLGEKTGRKGH LAVTTEPCLFPISDFSGGSFTLHG" mRNA complement(join(<22548725..22548770,22548873..22548929, 22549386..22549502,22549727..22549753,22550472..22550561, 22551074..22551199,22551286..22551339,22551669..22551749, 22551846..22551953,22552093..22552164,22552365..22552427, 22553454..22554173)) /locus_tag="TCM_029422" /product="CBL-interacting serine/threonine-protein kinase 23 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g05860.1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021541001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005054t1" /inference="similar to AA sequence:ricco:29599.m000169" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc696t4; inference alignment:Newbler:10:TSA:cgbaB_g04814t00001" CDS complement(join(<22548726..22548770,22548873..22548929, 22549386..22549502,22549727..22549753,22550472..22550561, 22551074..22551199,22551286..22551339,22551669..22551749, 22551846..22551953,22552093..22552164,22552365..22552427, 22553454..22553633)) /locus_tag="TCM_029422" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29599.m000169; paralog of Thecc1EG005054t1" /codon_start=1 /product="CBL-interacting serine/threonine-protein kinase 23 isoform 5" /protein_id="EOY27625.1" /translation="MAARTSAGTRTRVGKYELGRTLGEGTFAKVKFARNIETEQNVAI KILDKEKVLKHKMIGQIKREISTMKLIRHPNVIHMYEVMASKTKIYIVLEFVTGGELF DKIASRGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDANGVLKISDFGL SALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGARADLWSCGVILFVLMAGYLPFE DSNLTALYKKIFKADFNCPPWFSSSAKKLIKRILDPNPLTIIRVFHYLLGLVKRETRF TSKCPANEIISKIEEAAMPLGFDVKKNNYKMKLLGEKTGRKGHLAVTTEPCLFPISDF SGGSFT" gene 22558090..22564363 /locus_tag="TCM_029423" /note="dbxref CacaoGD:Thecc1EG029423" mRNA join(22558090..22558346,22558530..22558764, 22559098..22559352,22559950..22560104,22560828..22561005, 22561540..22561727,22562556..22562760,22562988..22563093, 22563620..22564363) /locus_tag="TCM_029423" /product="RNA helicase 1" /inference="alignment:exonerate-protein:2:frave:gene30380" /inference="similar to AA sequence:Phytozome:POPTR_0004s16530.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6019t1" CDS join(22558234..22558346,22558530..22558764, 22559098..22559352,22559950..22560104,22560828..22561005, 22561540..22561727,22562556..22562760,22562988..22563093, 22563620..22563732) /locus_tag="TCM_029423" /codon_start=1 /product="RNA helicase 1" /protein_id="EOY27627.1" /db_xref="Phytozome:POPTR_0004s16530.1" /db_xref="TAIR:AT4G15850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7FGZ2" /translation="MEEVKEKSVPILPWMRNPIDVSLFEDCPLSLVPCLDHRLEVALE NMGISSLFPVQVAVWQETIGPGAFERDLCINSPTGSGKTLAYALPIVQTLSTRAVKCL RALVVLPTRDLALQVKDVFASIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY DPEDLAYELQSSVDILVATPGRLMDHINSTKGFTLEHLHYLVVDETDRLLREAYQSWL PTVLQLTQSNDESLFPYADSFLSSTFGSLKTIRRFGVERGFKGKSYPRLVKMVLSATL TQDPSKLAQLSLHHPLLMTTGKRRYQLPEKLESYKLICDSNVRPLYLVALLQELGEEK CIVFTSSTESTHRLCTLLNLFGDLSIKIKEYSGLQHQSVRSKTLKAFREGKVQVLVSS DAMTRGMDVEGVRNVINYDMPPYIKTYIHRAGRTARAGQAGRCFTLLHKHEVKRFKKM LGKADNASVPHYSVPSSSIESLHAAYSSALGKLKETVESEASRKRKIGSKFSRLSKSK KTDHQKG" gene 22564142..22565644 /locus_tag="TCM_029424" /note="dbxref CacaoGD:Thecc1EG029424" mRNA 22564142..22565644 /locus_tag="TCM_029424" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6021t4" CDS 22564237..22564533 /locus_tag="TCM_029424" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27628.1" /translation="MQSLECRILVTCLESSMSGGAWLDSPYLKESVYLCLGFGTFSEI TQRSPSGHELPVCMHVITVHRAGSPYLKDYDFDSRLDAFLAGSTGGHGNFLLNC" gene 22565325..22569020 /locus_tag="TCM_029425" /note="dbxref CacaoGD:Thecc1EG029425" mRNA join(22565325..22565529,22566759..22566790, 22566894..22566974,22567513..22567555,22568124..22569020) /locus_tag="TCM_029425" /product="Nucleolar RNA-binding Nop10p family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s03780.1" /inference="similar to AA sequence:Phytozome:Glyma03g32150.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g13511t00001" CDS join(22565364..22565529,22566759..22566790, 22566894..22566974,22567513..22567555,22568124..22568221) /locus_tag="TCM_029425" /codon_start=1 /product="Nucleolar RNA-binding Nop10p family protein" /protein_id="EOY27629.1" /db_xref="Phytozome:Glyma03g32150.1" /db_xref="TAIR:AT2G20490.1" /translation="MMFPTQAPRDNYSVGPFPFMCQSLDGKLRLSLRIWNLLGSTASK VTLFCAQPASTASLLLQAPAEESCYSFSLDKMYLQFYINENGDKVYTTKKESPVGMPT QSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY" gene complement(22569029..22569500) /locus_tag="TCM_029426" /note="dbxref CacaoGD:Thecc1EG029426" mRNA complement(join(22569029..22569355,22569442..22569500)) /locus_tag="TCM_029426" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(join(22569189..22569355,22569442..22569475)) /locus_tag="TCM_029426" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27630.1" /translation="MIGRPAPFALTGVLLSVVALVDTAHVTQHSDGCSNFVVSGSTKQ QQIKRTVPSAIRFRLRILQPPS" gene 22570954..22572163 /locus_tag="TCM_029427" /note="dbxref CacaoGD:Thecc1EG029427" mRNA 22570954..22572163 /locus_tag="TCM_029427" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.24 coverage" CDS 22571424..22571648 /locus_tag="TCM_029427" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27631.1" /translation="MKEKFNSLEALIMWCITLLIGSNSRMGERRNKTLAPRPPHLSYG QHTIKAAALQLHASLLKRVTRMHRVYQGKQ" gene 22572825..22573497 /locus_tag="TCM_029428" /note="dbxref CacaoGD:Thecc1EG029428" mRNA 22572825..22573497 /locus_tag="TCM_029428" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.86 coverage" CDS 22572876..22573163 /locus_tag="TCM_029428" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27632.1" /translation="MADIFSVTTLQETLCPPKAESPVVTPLLTPFSAVVPARFTLARL TIHITLATIHEEENEEESMEVSQNSSTSFLSTCFLEVKKPLPSYSHNCKCA" mobile_element 22575881..22575944 /note="source:CACAO_PIF_E54_scaffold_3 7198 7260" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22575947..22576012) /note="source:CACAO_Mutator_E714_scaffold_3 806 860" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(22576044..22576146) /note="source:CACAO_Mariner_E220_scaffold_9 11752 11855" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 22576091..22576159 /note="source:scaffold_5_CACTA_0615 499 568" /mobile_element_type="transposon:TIR/CACTA" gene 22576822..22578045 /locus_tag="TCM_029429" /note="dbxref CacaoGD:Thecc1EG029429" mRNA 22576822..22578045 /locus_tag="TCM_029429" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.64 coverage" gene 22577110..22582238 /locus_tag="TCM_029430" /note="dbxref CacaoGD:Thecc1EG029430" mRNA join(22577110..22577282,22579676..22579874, 22581272..22582238) /locus_tag="TCM_029430" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage" CDS 22577280..22577492 /locus_tag="TCM_029429" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27633.1" /translation="MVSGMRYLQTCEKAPALVISHKKSSTSPRLETIVEEGSELNFEF GQKMVFFLLPVFLSVISYILLYRDIA" CDS join(22579678..22579874,22581272..22581323) /locus_tag="TCM_029430" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27634.1" /translation="MVKDVKSMQNLGEVAPALLISHQKPSSSPRLETIAEEDCGGVRV PKRVFILLPVLLSLSFYVLLYRNRYRFKSILLTTKMNK" gene complement(22581046..22582150) /locus_tag="TCM_029431" /note="dbxref CacaoGD:Thecc1EG029431" mRNA complement(22581046..22582150) /locus_tag="TCM_029431" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.58 coverage" CDS complement(22581775..22581996) /locus_tag="TCM_029431" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27635.1" /translation="MMKKVGYKQNWGAVAPAPLICPRRSSTCPRLETIHEEGCEYHAV FSNKVFLVLPVVLSTVFYFFLYKEATLCA" gene complement(22583345..22588197) /locus_tag="TCM_029432" /note="dbxref CacaoGD:Thecc1EG029432" mRNA complement(join(22583345..22583711,22583940..22584229, 22584505..22584802,22585091..22585161,22586027..22586143, 22586264..22586338,22586482..22586543,22587158..22587261, 22587940..22587984,22588074..22588197)) /locus_tag="TCM_029432" /product="LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28331.m000091.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033583t5" /inference="similar to AA sequence:ricco:28331.m000091" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5878t2; alternateUTRof:Thecc1EG029432t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5878t6; inference alignment:Newbler:10:TSA:cgbaP2_g00224t00001_C2" mRNA complement(join(22583345..22583711,22583925..22584229, 22584505..22584802,22585091..22585161,22586027..22586143, 22586264..22586338,22586482..22586543,22587158..22587261, 22587940..22587984,22588074..22588197)) /locus_tag="TCM_029432" /product="LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:28331.m000091.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033583t5" /inference="similar to AA sequence:ricco:28331.m000091" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5878t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5878t6; inference alignment:Newbler:10:TSA:cgbaP2_g00224t00001_C2" mRNA complement(join(22583345..22583711,22583926..22584229, 22584505..22584802,22585091..22585161,22586027..22586143, 22586264..22586338,22586482..22586543,22587158..22587261, 22587942..22587986,22588074..22588197)) /locus_tag="TCM_029432" /product="LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:28331.m000091.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033583t5" /inference="similar to AA sequence:ricco:28331.m000091" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5878t3; alternateUTRof:Thecc1EG029432t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5878t6; inference alignment:Newbler:10:TSA:cgbaP2_g00224t00001_C2" mRNA complement(join(22583424..22583711,22583940..22584229, 22584505..22584802,22585091..22585161,22586027..22586143, 22586264..22586338,22586482..22586543,22587158..22587208, 22587942..22588195)) /locus_tag="TCM_029432" /product="LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28331.m000091.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033583t5" /inference="similar to AA sequence:ricco:28331.m000091" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5878t6" CDS complement(join(22583657..22583711,22583940..22584229, 22584505..22584802,22585091..22585161,22586027..22586143, 22586264..22586338,22586482..22586543,22587158..22587200)) /locus_tag="TCM_029432" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28331.m000091; paralog of Thecc1EG033583t5" /codon_start=1 /product="LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein isoform 1" /protein_id="EOY27636.1" /db_xref="TAIR:AT5G46150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67YS6" /translation="MTDTDQERDRNKETAFYKFTQQTLPACKPVLTPAWVITIFLFTG CIFIPVGLVTLRASRSVVEIVDRYDAECVPEPFRIDKVSYVQDDSIPKNCSRFLKVHK YMKAPIYIYYQLDNYYQNHRRYVKSRSDQQLLHGRKYHGTSSCQPVEFNNDHAIVPCG LVAWSLFNDTFKFIRERAELKVNRKNIAWKSDRDHKFGKKVYPYNFQNGTLIGGGKLN PRIPLSDQEDLIVWMRISALPSFRKLYGRIEEDLDVDDVVVVHLMNNYNTYSFSGKKK LVLSTSSWLGGKNDFLGLAYVFVGSSSLILALVFMLLHLRYRRPYRDTIYLPWNRKSL SV" CDS complement(join(22583657..22583711,22583940..22584229, 22584505..22584802,22585091..22585161,22586027..22586143, 22586264..22586338,22586482..22586543,22587158..22587200)) /locus_tag="TCM_029432" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:28331.m000091; paralog of Thecc1EG033583t5" /codon_start=1 /product="LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein isoform 1" /protein_id="EOY27639.1" /db_xref="TAIR:AT5G46150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67YS6" /translation="MTDTDQERDRNKETAFYKFTQQTLPACKPVLTPAWVITIFLFTG CIFIPVGLVTLRASRSVVEIVDRYDAECVPEPFRIDKVSYVQDDSIPKNCSRFLKVHK YMKAPIYIYYQLDNYYQNHRRYVKSRSDQQLLHGRKYHGTSSCQPVEFNNDHAIVPCG LVAWSLFNDTFKFIRERAELKVNRKNIAWKSDRDHKFGKKVYPYNFQNGTLIGGGKLN PRIPLSDQEDLIVWMRISALPSFRKLYGRIEEDLDVDDVVVVHLMNNYNTYSFSGKKK LVLSTSSWLGGKNDFLGLAYVFVGSSSLILALVFMLLHLRYRRPYRDTIYLPWNRKSL SV" CDS complement(join(22583936..22584229,22584505..22584802, 22585091..22585161,22586027..22586143,22586264..22586338, 22586482..22586543,22587158..22587200)) /locus_tag="TCM_029432" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28331.m000091; paralog of Thecc1EG033583t5" /codon_start=1 /product="LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein isoform 2" /protein_id="EOY27637.1" /db_xref="TAIR:AT5G46150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67YS6" /translation="MTDTDQERDRNKETAFYKFTQQTLPACKPVLTPAWVITIFLFTG CIFIPVGLVTLRASRSVVEIVDRYDAECVPEPFRIDKVSYVQDDSIPKNCSRFLKVHK YMKAPIYIYYQLDNYYQNHRRYVKSRSDQQLLHGRKYHGTSSCQPVEFNNDHAIVPCG LVAWSLFNDTFKFIRERAELKVNRKNIAWKSDRDHKFGKKVYPYNFQNGTLIGGGKLN PRIPLSDQEDLIVWMRISALPSFRKLYGRIEEDLDVDDVVVVHLMNNYNTYSFSGKKK LVLSTSSWLGGKNDFLGLAYVFVGSSSLILALVFMLLHLRYRR" CDS complement(join(22583936..22584229,22584505..22584802, 22585091..22585161,22586027..22586143,22586264..22586338, 22586482..22586543,22587158..22587200)) /locus_tag="TCM_029432" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28331.m000091; paralog of Thecc1EG033583t5" /codon_start=1 /product="LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein isoform 2" /protein_id="EOY27638.1" /db_xref="TAIR:AT5G46150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67YS6" /translation="MTDTDQERDRNKETAFYKFTQQTLPACKPVLTPAWVITIFLFTG CIFIPVGLVTLRASRSVVEIVDRYDAECVPEPFRIDKVSYVQDDSIPKNCSRFLKVHK YMKAPIYIYYQLDNYYQNHRRYVKSRSDQQLLHGRKYHGTSSCQPVEFNNDHAIVPCG LVAWSLFNDTFKFIRERAELKVNRKNIAWKSDRDHKFGKKVYPYNFQNGTLIGGGKLN PRIPLSDQEDLIVWMRISALPSFRKLYGRIEEDLDVDDVVVVHLMNNYNTYSFSGKKK LVLSTSSWLGGKNDFLGLAYVFVGSSSLILALVFMLLHLRYRR" gene 22588435..22591775 /locus_tag="TCM_029433" /note="dbxref CacaoGD:Thecc1EG029433" mRNA join(22588435..22591197,22591508..22591540, 22591716..22591775) /locus_tag="TCM_029433" /product="Pentatricopeptide repeat protein 78" /inference="alignment:exonerate-protein:2:frave:gene30376" /inference="similar to AA sequence:frave:gene30376" /note="quality class is strong, express is medium, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc149t5" CDS 22588688..22590781 /locus_tag="TCM_029433" /note="dbxref frave:gene30376" /codon_start=1 /product="Pentatricopeptide repeat protein 78" /protein_id="EOY27640.1" /db_xref="TAIR:AT1G11290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F5CAE0" /translation="MLPAQRSRHFLCSFPHFPATQTRLFSSTFSSLLNLCKKPQHLQQ IHARFILHGLHQNPTLSSHLIDSYANFGLLNLSLQLFYSITNPSSRLYNTILRNLATL GEYETTLLVYKDMVVKKSMYPDEKAYPLVLRACSCLLDVECGKMVHGQLAKLGFDSFE VVGDALVEFYRGFGEFEQKVVDEKPVKDLDNWKSLIFEPPRSGSLVSMINLLRASVDL GSLDAGKAVHCLVLVSDLSKDLSVNTALLSMYSKLDSLKYARLLFKNMLEKDLVVWNI MISAYSQHGKPKESLAQLRCMANSGVRADLFTAIPAISSIRQLKSFEWAKQIHAHVIR NGSDYQVSVHNSLIDMYCECDCLIYARKIFENVTSKTVVSWSSMIKGYVSHDQNLDAL SLFSRMKTDGVKTDFITVINILPACVNIGALEQVKCLHGYSMKFGLNLLSSVNSAILI SYAKCGSIEMARKLFDEEKVDGKDIITWNSMISAHSKHGDWSQCFELYNQMKQLNLKL DQVTFLGLLTACVNSGLVKEGRAFFKEMREIYGCQPSQEHYACMVDLLGRAGHIKEAR ELVNEMPFKPDTRVLGPLLSACKLHSETKFAESAAEKLLRMEPENAGNYVLLSNIYAA AGKWDKFAKMRRLLKERGLKKIPGCSWLQINGHVHEFRVADQSHPKAKDIYALIGILE FAIKEARDHTAGKVS" gene complement(22591858..22594832) /locus_tag="TCM_029434" /note="dbxref CacaoGD:Thecc1EG029434" mRNA complement(join(22591858..22592686,22593108..22593399, 22594073..22594832)) /locus_tag="TCM_029434" /product="Pak inhibitor skb15, putative" /inference="alignment:exonerate- protein:2:ricco:28331.m000094" /inference="similar to AA sequence:ricco:28331.m000094" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc149t2" CDS complement(join(22592619..22592686,22593108..22593399, 22594073..22594729)) /locus_tag="TCM_029434" /note="dbxref ricco:28331.m000094" /codon_start=1 /product="Pak inhibitor skb15, putative" /protein_id="EOY27641.1" /db_xref="TAIR:AT1G65030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T810" /translation="MSLIAGSYERFIWGFRLKPLNYDPSSQTLTLTQLFSYPSHNAPI TTVAAAGPAAASGSSDDTIHIYDLSTAASLGPLHHFSSSITALSFYSPPNLSFPRNLL SASADGSISIFDTEPFVLLKSFRSHKKGINDLAVHSSGKLALSVSRDGCLAMSNLMRG KRSFCCRLGKEATIVKFDGSGERFFMASEEKIGVHLAEDARLLYELENEKRVLCAASG ESGILFTGGESRSITAWDTNSGKVAYCIEDAHSTRVKGIVVLAKDGGVDDAPYLVASA SSDGFIRVWDVRMAIKGKPNPLAEANTKSRLTCLAGSSLQSSKRPQIGKSAPKEEQSD AEDV" mobile_element 22594910..22595036 /note="source:scaffold_2_CACTA_0282 4863 4985" /mobile_element_type="transposon:TIR/CACTA" gene 22595940..22597343 /locus_tag="TCM_029435" /note="dbxref CacaoGD:Thecc1EG029435" mRNA join(22595940..22596141,22596364..22596428, 22596837..22597343) /locus_tag="TCM_029435" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS join(22595958..22596141,22596364..22596428, 22596837..22597115) /locus_tag="TCM_029435" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27642.1" /translation="MAFFLLLEYGNIEGEEAEDNVEGDHKESNKVEVNNDINASMDDE DNLNDNELGKSSIIDGIGHGRFKLNESEYGLKERAREMRGWKDCESDKYTRLWSFAIE LMHGNLGATVKIQVDRECKRKTVFLLFCACFKAWKERWMYESRPPIIGVDHTVFSKRF AKRELLVAIRRDGNN" gene 22598307..22600645 /locus_tag="TCM_029436" /note="dbxref CacaoGD:Thecc1EG029436" mRNA join(22598307..22598559,22599407..22599519, 22600108..22600195,22600405..22600645) /locus_tag="TCM_029436" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g15470.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021533001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15233t00001" CDS join(22598475..22598559,22599407..22599519, 22600108..22600188) /locus_tag="TCM_029436" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27643.1" /db_xref="Phytozome:GSVIVT01021533001" /db_xref="TAIR:AT4G18400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H413" /translation="MSQEQQQPSPAPASQPDHPPPPPFDPSRMIGIIKRKALIKELAA VYHAECLAYCQELLELQRKWDEPFIDVKTPDDLRKEKTRPPKRLKKSR" gene complement(22601208..22606310) /locus_tag="TCM_029437" /note="dbxref CacaoGD:Thecc1EG029437" mRNA complement(join(22601208..22601647,22601743..22601925, 22602671..22602845,22603131..22603333,22603516..22603620, 22603744..22603862,22603963..22604073,22604336..22604594, 22605145..22605276,22605807..22606310)) /locus_tag="TCM_029437" /product="Endoplasmic reticulum oxidoreductins 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g10830.2" /inference="similar to AA sequence:Phytozome:Glyma09g10830.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b028469t1a2; inference alignment:Newbler:10:TSA:cgbaB_g05208t00001" mRNA complement(join(22601404..22601647,22601743..22601925, 22602671..22602794,22603131..22603333,22603516..22603620, 22603744..22603862,22603963..22604073,22604336..22604594, 22605145..22605276,22605807..22606298)) /locus_tag="TCM_029437" /product="Endoplasmic reticulum oxidoreductins 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g10830.2" /inference="similar to AA sequence:frave:gene30373" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05208t00001; inference alignment:Newbler:10:TSA:cgbaB_g05208t00001" CDS complement(join(22601743..22601925,22602671..22602794, 22603131..22603333,22603516..22603620,22603744..22603862, 22603963..22604073,22604336..22604594,22605145..22605276, 22605807..22605971)) /locus_tag="TCM_029437" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene30373" /codon_start=1 /product="Endoplasmic reticulum oxidoreductins 1 isoform 1" /protein_id="EOY27644.1" /db_xref="TAIR:AT1G72280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C7S7" /translation="MVESEVKKGKKSEKMRRRWVIGAFITIVVAIALASKSTLKISLF GHTNKSCLCSQDKHKYSGIVQDCCCDYETVDHLNEEVLHPLLQELVKTPFFRYFKVKL WCDCPFWPDDGMCRLRDCSVCECPESEFPELFKKPNHRGLSSDDLMCQEGKPQAAVDR TLDSKAFRGWTETDNPWTHDDETDNSEMTYVNLQLNPERYTGYTGPSARRIWDAVYSE NCPKYPSEESCQEEKILYKLISGLHSSISIHIASDYLLDEATNLWGHNLELMYDRVLR YPYRVENLYFTFLFVLRAVTKATDYLEQAEYDTGNPTEDLKTQSLMRQLVYNPKLQAA CPLPFDEAKLWKGQRGPELKQKIQAQFKNISALMDCVGCEKCRLWGKLQVLGLGTALK ILFSVNGEEHLGQTLQLQRNEVIALMNLLNRLSESVKFVHEMGHAAEKLIEGKISSPT GPNSLVHRIWASIVKT" CDS complement(join(22602821..22602845,22603131..22603333, 22603516..22603620,22603744..22603862,22603963..22604073, 22604336..22604594,22605145..22605276,22605807..22605971)) /locus_tag="TCM_029437" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Endoplasmic reticulum oxidoreductins 1 isoform 2" /protein_id="EOY27645.1" /db_xref="Phytozome:Glyma09g10830.2" /db_xref="TAIR:AT1G72280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C7S7" /translation="MVESEVKKGKKSEKMRRRWVIGAFITIVVAIALASKSTLKISLF GHTNKSCLCSQDKHKYSGIVQDCCCDYETVDHLNEEVLHPLLQELVKTPFFRYFKVKL WCDCPFWPDDGMCRLRDCSVCECPESEFPELFKKPNHRGLSSDDLMCQEGKPQAAVDR TLDSKAFRGWTETDNPWTHDDETDNSEMTYVNLQLNPERYTGYTGPSARRIWDAVYSE NCPKYPSEESCQEEKILYKLISGLHSSISIHIASDYLLDEATNLWGHNLELMYDRVLR YPYRVENLYFTFLFVLRAVTKATDYLEQAEYDTGNPTEDLKTQSLMRQLVYNPKLQAA CPLPFDEAKLWKGQRGPELKQKIQAQFKNISDSSGLLQ" gene complement(<22609461..22610449) /locus_tag="TCM_029438" /note="dbxref CacaoGD:Thecc1EG029438" mRNA complement(join(<22609461..22609853,22610333..22610449)) /locus_tag="TCM_029438" /product="Glutaredoxin family protein" /inference="alignment:exonerate- protein:2:ricco:29693.m001964" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017271t1" /inference="similar to AA sequence:ricco:29693.m001964" /note="quality class is strongpartial, express is strong, homology is ortholog strong, intron is medium, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g17498t00001" CDS complement(<22609461..22609829) /locus_tag="TCM_029438" /note="dbxref ricco:29693.m001964; paralog of Thecc1EG017271t1" /codon_start=1 /product="Glutaredoxin family protein" /protein_id="EOY27646.1" /db_xref="TAIR:AT3G21460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TKB1" /translation="MVSNIAIDSEASATMKLDNPYQIVRQLASTNAVVLFSMSGCCMC TVAKRLLFGLGVGPTIIELDHHVSGPDIQAVLFQLAADGRQPVPAVFVGGKFLGGIET LMACHINGTLVPLLKEAGALW" gene complement(22611343..22612786) /locus_tag="TCM_029439" /note="dbxref CacaoGD:Thecc1EG029439" mRNA complement(22611343..22612786) /locus_tag="TCM_029439" /product="E3 ubiquitin-protein ligase arkadia-A, putative" /inference="alignment:exonerate-protein:2:frave:gene30372" /inference="similar to AA sequence:frave:gene30372" /note="quality class is medium-utrpoor, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS complement(22612176..22612634) /locus_tag="TCM_029439" /note="dbxref frave:gene30372" /codon_start=1 /product="E3 ubiquitin-protein ligase arkadia-A, putative" /protein_id="EOY27647.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C974" /translation="MDTDLEKLQNFPLLKFTRNSSISPDPEIEDEPRYTSLKDVILSS SPPPCRSINQEGNEFDYSKIIIRNRLVKSAASAYLQSAAILANRNENCLLNLWGKLKN NVASSFSCWNVYFRDPFEACFGAIYQFLACTLGGAWGRIFGYQETLLNER" mobile_element 22613689..22613902 /note="source:scaffold_9_CACTA_0946 17772 17993" /mobile_element_type="transposon:TIR/CACTA" gene 22621164..22625362 /locus_tag="TCM_029440" /note="dbxref CacaoGD:Thecc1EG029440" mRNA join(22621164..22621791,22621874..22621944, 22623198..22623533,22623639..22623746,22623851..22624453, 22624536..22625362) /locus_tag="TCM_029440" /product="Inositol transporter 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021530001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030370t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021530001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04398t00001" CDS join(22621656..22621791,22621874..22621944, 22623198..22623533,22623639..22623746,22623851..22624453, 22624536..22625018) /locus_tag="TCM_029440" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030370t1" /codon_start=1 /product="Inositol transporter 2 isoform 1" /protein_id="EOY27648.1" /db_xref="Phytozome:GSVIVT01021530001" /db_xref="TAIR:AT1G30220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23492" /translation="MEGGIHTGTDASAFKECFSLTWRNPYVLRLAFSAGIGGLLFGYD TGVISGALLYIRDDFESVDRQTVLQESIVSMAIAGAIIGAAVGGWMNDRYGRRTAILI ADFLFLIGAVIMASAPSAPLLIVGRIFVGLGVGMASMTSPLYISEASPAKIRGALVST NGFLITGGQFLSYLINLAFTKAPGTWRWMLGVAGLPPIVQFILMFGLPESPRWLFRKG REEEAKAILRKIYPVDEVEQEILDLKESVEAEIREEGSSEKINIIKLLQTKTVRRGLT AGVGLQVFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLVTAGLNAFGSIVSIYFI DRTGRKKLLIISLLGLVISLGVLSGVFHETTSHSPVVSSVETSHFSNYTCPDYSSAAN SATWDCMKCLKASSPHCGFCASPTNKLLPGACLISNDTVKKQCHDESRLWYTRGCPSK YGWLALIGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQS FLSLTETIGTSWTFLIFGVISVVALLFVIIFVPETKGLPIEEIEKMLEVRALHWRFWE KSDEPKEKSQEV" mRNA join(22622272..22622300,22623198..22623533, 22623639..22623746,22623851..22624453,22624536..22624681, 22624925..22625331) /locus_tag="TCM_029440" /product="Inositol transporter 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021530001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030370t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021530001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc585t2; inference alignment:Newbler:10:TSA:cgbaP2_g04398t00001" CDS join(22623213..22623533,22623639..22623746, 22623851..22624453,22624536..22624681,22624925..22625018) /locus_tag="TCM_029440" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030370t1" /codon_start=1 /product="Inositol transporter 2 isoform 2" /protein_id="EOY27649.1" /db_xref="Phytozome:GSVIVT01021530001" /db_xref="TAIR:AT1G30220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23492" /translation="MAIAGAIIGAAVGGWMNDRYGRRTAILIADFLFLIGAVIMASAP SAPLLIVGRIFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITGGQFLSYLIN LAFTKAPGTWRWMLGVAGLPPIVQFILMFGLPESPRWLFRKGREEEAKAILRKIYPVD EVEQEILDLKESVEAEIREEGSSEKINIIKLLQTKTVRRGLTAGVGLQVFQQFVGINT VMYYSPTIVQLAGFASNRTALLLSLVTAGLNAFGSIVSIYFIDRTGRKKLLIISLLGL VISLGVLSGVFHETTSHSPVVSSVETSHFSNYTCPDYSSAANSATWDCMKCLKASSPH CGFCASPTNKLLPGACLISNDTVKKQCHDESRLWYTRGCPSKYGWLALIGLALYIIFF SEEIEKMLEVRALHWRFWEKSDEPKEKSQEV" gene complement(22625422..22628386) /locus_tag="TCM_029441" /note="dbxref CacaoGD:Thecc1EG029441" mRNA complement(join(22625422..22626252,22627070..22627161, 22628065..22628237,22628348..22628386)) /locus_tag="TCM_029441" /product="Ribosomal protein L14p/L23e family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29677.m000186.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011271t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021529001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12257t00001" CDS complement(join(22625878..22626252,22627070..22627161, 22628065..22628237,22628348..22628373)) /locus_tag="TCM_029441" /note="paralog of Thecc1EG011271t1" /codon_start=1 /product="Ribosomal protein L14p/L23e family protein, putative" /protein_id="EOY27650.1" /db_xref="Phytozome:GSVIVT01021529001" /db_xref="TAIR:AT5G46160.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LNP8" /translation="MKNFRMKMRLMQPWAQTQCPSSSPPPKSQRLKGLGFFLVQSFSF SPVKVGELITTMAASFASRCSGVGRSLLGGLVNNFSKLPSTSSEITSGSFLSQQQRTF IQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAMPNGKVKKGKVVYGV VVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAA HIA" mobile_element complement(22628987..22629038) /note="source:INTACT289_F14_scaffold_4-int 1365 1413" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22630011..22630050) /note="source:CACAO_Again_on_E123_scaffold_5 368 407" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22630166..22630259) /note="source:scaffold_9_CACTA_0942 5268 5360" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22631542..22631593) /note="source:scaffold_9_CACTA_0946 17904 17957" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22631633..22631689 /note="source:scaffold_5_CACTA_0580 5294 5349" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22631765..22631958) /note="source:scaffold_2_CACTA_0245 4716 4912" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22631877..22631978 /note="source:CACAO_Mutator_E592_scaffold_3 3634 3742" /mobile_element_type="transposon:TIR/Mutator" mobile_element 22632575..22632614 /note="source:CACAO_Mariner_E220_scaffold_9 8463 8572" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 22632615..22632925 /note="source:CACAO_MITE_S227_scaffold_9 29 342" /mobile_element_type="transposon:TIR/MITE" mobile_element 22632926..22633035 /note="source:CACAO_Mariner_E220_scaffold_9 8573 8887" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 22632931..22633058 /note="source:MITE_Unknow_2_5 498 629" /mobile_element_type="transposon:TIR/MITE" gene 22640353..22653946 /locus_tag="TCM_029442" /note="dbxref CacaoGD:Thecc1EG029442" mRNA join(22640353..22640668,22640786..22640904, 22641305..22641795,22642152..>22643903) /locus_tag="TCM_029442" /product="Teosinte branched 1, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:29693.m001968" /inference="similar to AA sequence:Phytozome:POPTR_0011s02350.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc10t11; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16451t1" mRNA join(22640360..22640904,22641118..22641164, 22641305..22641795,22642152..22643990,22653153..22653536) /locus_tag="TCM_029442" /product="Teosinte branched 1, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29693.m001968" /inference="similar to AA sequence:Phytozome:POPTR_0011s02350.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16451t1" mRNA join(22640495..22640668,22640786..22640904, 22641305..22641524,22641663..22641795,22642152..22643990, 22653153..22653635) /locus_tag="TCM_029442" /product="Teosinte branched 1, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29693.m001968" /inference="similar to AA sequence:Phytozome:POPTR_0011s02350.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6108t1; alternateUTRof:Thecc1EG029442t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16451t1" mRNA join(22640736..22640904,22641305..22641524, 22642152..22643990,22653153..22653635) /locus_tag="TCM_029442" /product="Teosinte branched 1, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29693.m001968" /inference="similar to AA sequence:Phytozome:POPTR_0011s02350.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6108t2; alternateUTRof:Thecc1EG029442t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16451t1" mRNA join(22641500..22641524,22641663..22643990, 22653153..22653946) /locus_tag="TCM_029442" /product="Teosinte branched 1, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29693.m001968" /inference="similar to AA sequence:Phytozome:POPTR_0011s02350.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc8t13; alternateUTRof:Thecc1EG029442t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16451t1" CDS 22642543..22643946 /locus_tag="TCM_029442" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Teosinte branched 1, putative isoform 1" /protein_id="EOY27651.1" /db_xref="Phytozome:POPTR_0011s02350.1" /db_xref="TAIR:AT4G18390.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYW5" /translation="MEVEEIQTQACKFSRVGNGRNDSSKIGQKVSDNYPDDEEDGELN KRAGANGGGGGGGGGADTAGTNRLRGWHHSSRIIRVSRASGGKDRHSKVWTSKGLRDR RVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASDAIAELPSLNSSFPDTPKQLSD EKRASGGNEQGFDSAEVELDGDPNNYQQNQSQHLSLSKSACSSTSETSRNSGLSLSRS EIRVKARERARERAAKEKEKEQESRIAHHQNVNPISQNSSFTELLTGGIGSVGNNNAS PTASAHQNPNGEPDFFHKANTARQWPGTPMDYFTSGLLAPSSSSRSHHSSGFPGQIQL GNSLPQSISISPFNVSGENHQELQHFSFVPNPDHLIPVATTQPGPGGDYNLNFTISSG LAGFNRGTLQSNSPSFSPHLLQRFSSIDGSSPFYIGTPPVENHHHHQFPAGLDGRLQL CYGDGSRSSDQKGKGKN" CDS 22642543..22643946 /locus_tag="TCM_029442" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Teosinte branched 1, putative isoform 1" /protein_id="EOY27652.1" /db_xref="Phytozome:POPTR_0011s02350.1" /db_xref="TAIR:AT4G18390.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYW5" /translation="MEVEEIQTQACKFSRVGNGRNDSSKIGQKVSDNYPDDEEDGELN KRAGANGGGGGGGGGADTAGTNRLRGWHHSSRIIRVSRASGGKDRHSKVWTSKGLRDR RVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASDAIAELPSLNSSFPDTPKQLSD EKRASGGNEQGFDSAEVELDGDPNNYQQNQSQHLSLSKSACSSTSETSRNSGLSLSRS EIRVKARERARERAAKEKEKEQESRIAHHQNVNPISQNSSFTELLTGGIGSVGNNNAS PTASAHQNPNGEPDFFHKANTARQWPGTPMDYFTSGLLAPSSSSRSHHSSGFPGQIQL GNSLPQSISISPFNVSGENHQELQHFSFVPNPDHLIPVATTQPGPGGDYNLNFTISSG LAGFNRGTLQSNSPSFSPHLLQRFSSIDGSSPFYIGTPPVENHHHHQFPAGLDGRLQL CYGDGSRSSDQKGKGKN" CDS 22642543..22643946 /locus_tag="TCM_029442" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Teosinte branched 1, putative isoform 1" /protein_id="EOY27653.1" /db_xref="Phytozome:POPTR_0011s02350.1" /db_xref="TAIR:AT4G18390.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYW5" /translation="MEVEEIQTQACKFSRVGNGRNDSSKIGQKVSDNYPDDEEDGELN KRAGANGGGGGGGGGADTAGTNRLRGWHHSSRIIRVSRASGGKDRHSKVWTSKGLRDR RVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASDAIAELPSLNSSFPDTPKQLSD EKRASGGNEQGFDSAEVELDGDPNNYQQNQSQHLSLSKSACSSTSETSRNSGLSLSRS EIRVKARERARERAAKEKEKEQESRIAHHQNVNPISQNSSFTELLTGGIGSVGNNNAS PTASAHQNPNGEPDFFHKANTARQWPGTPMDYFTSGLLAPSSSSRSHHSSGFPGQIQL GNSLPQSISISPFNVSGENHQELQHFSFVPNPDHLIPVATTQPGPGGDYNLNFTISSG LAGFNRGTLQSNSPSFSPHLLQRFSSIDGSSPFYIGTPPVENHHHHQFPAGLDGRLQL CYGDGSRSSDQKGKGKN" CDS 22642543..22643946 /locus_tag="TCM_029442" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Teosinte branched 1, putative isoform 1" /protein_id="EOY27655.1" /db_xref="Phytozome:POPTR_0011s02350.1" /db_xref="TAIR:AT4G18390.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYW5" /translation="MEVEEIQTQACKFSRVGNGRNDSSKIGQKVSDNYPDDEEDGELN KRAGANGGGGGGGGGADTAGTNRLRGWHHSSRIIRVSRASGGKDRHSKVWTSKGLRDR RVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASDAIAELPSLNSSFPDTPKQLSD EKRASGGNEQGFDSAEVELDGDPNNYQQNQSQHLSLSKSACSSTSETSRNSGLSLSRS EIRVKARERARERAAKEKEKEQESRIAHHQNVNPISQNSSFTELLTGGIGSVGNNNAS PTASAHQNPNGEPDFFHKANTARQWPGTPMDYFTSGLLAPSSSSRSHHSSGFPGQIQL GNSLPQSISISPFNVSGENHQELQHFSFVPNPDHLIPVATTQPGPGGDYNLNFTISSG LAGFNRGTLQSNSPSFSPHLLQRFSSIDGSSPFYIGTPPVENHHHHQFPAGLDGRLQL CYGDGSRSSDQKGKGKN" CDS 22642543..>22643901 /locus_tag="TCM_029442" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Teosinte branched 1, putative isoform 4" /protein_id="EOY27654.1" /db_xref="Phytozome:POPTR_0011s02350.1" /db_xref="TAIR:AT4G18390.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYW5" /translation="MEVEEIQTQACKFSRVGNGRNDSSKIGQKVSDNYPDDEEDGELN KRAGANGGGGGGGGGADTAGTNRLRGWHHSSRIIRVSRASGGKDRHSKVWTSKGLRDR RVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASDAIAELPSLNSSFPDTPKQLSD EKRASGGNEQGFDSAEVELDGDPNNYQQNQSQHLSLSKSACSSTSETSRNSGLSLSRS EIRVKARERARERAAKEKEKEQESRIAHHQNVNPISQNSSFTELLTGGIGSVGNNNAS PTASAHQNPNGEPDFFHKANTARQWPGTPMDYFTSGLLAPSSSSRSHHSSGFPGQIQL GNSLPQSISISPFNVSGENHQELQHFSFVPNPDHLIPVATTQPGPGGDYNLNFTISSG LAGFNRGTLQSNSPSFSPHLLQRFSSIDGSSPFYIGTPPVENHHHHQFPAGLDGRLQL CYG" mobile_element complement(22648748..22648821) /note="source:scaffold_4_CACTA_0511 13470 13841" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22648822..22649136 /note="source:CACAO_on_E69_scaffold_9 98 405" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22649146..22649187) /note="source:scaffold_9_CACTA_0946 6866 6907" /mobile_element_type="transposon:TIR/CACTA" gene complement(22657315..22659689) /locus_tag="TCM_029448" /note="dbxref CacaoGD:Thecc1EG029448" mRNA complement(join(22657315..22657508,22658071..22659689)) /locus_tag="TCM_029448" /product="F-box family protein" /inference="alignment:exonerate- protein:2:ricco:29693.m001972" /inference="similar to AA sequence:ricco:29693.m001972" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc271t1_C2" CDS complement(22658094..22659287) /locus_tag="TCM_029448" /note="dbxref ricco:29693.m001972" /codon_start=1 /product="F-box family protein" /protein_id="EOY27656.1" /db_xref="TAIR:AT5G46170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNK5" /translation="MSSVRSDPIHRIHPEPIDHVDRLPDSLLLLVFNKIGDVKALGRC CVVSRRFHSLVPQVENVVVRVDCVISDDDCSSSSSSSDKSRATGPFSNLFRLVFGGIV KPLQALGQFLGPKRPTLNETLNTPSSSSLSVGPGGDDDGEMDQGGVTHHSPTQVLRNF NEIRFLRIELPSGELGIDDGVLLKWRADFGSTLDNCVILGAASVINNVHLQVSEYGND GFCINNNITSGSNVGNSDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPII ADHKTLDSLVLTDADGQGVLCMNRDQLEELRVKPLSASSASKRTLVPALNMRLWYAPY LELPDGVVLKGATLVAIRPSEQSASKKEVSDASWLSTAFEEPYGTAAKMLVKRRTYCL EMNSF" gene complement(22666340..22667459) /locus_tag="TCM_029450" /note="dbxref CacaoGD:Thecc1EG029450" mRNA complement(22666340..22667459) /locus_tag="TCM_029450" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.63 coverage" CDS complement(22666612..22666917) /locus_tag="TCM_029450" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27657.1" /translation="MSHCTQMKRISGSWTYMIISYHFLSKLSHPNLLFLLLFFCSPPT WKLEKHANEQRKPNRYACTAQFHNNDAIYQNREAGCHYQTARVIKKSGRRDSDPPTR" gene complement(22669462..22678148) /locus_tag="TCM_029451" /note="dbxref CacaoGD:Thecc1EG029451" mRNA complement(join(22669462..22669858,22670108..22670341, 22670916..22670996,22671244..22671341,22673157..22673212, 22673426..22673585,22674076..22674306,22674550..22674658, 22675426..22675835)) /locus_tag="TCM_029451" /product="Ornithine-delta-aminotransferase isoform 2" /inference="alignment:exonerate- protein:2:ricco:29693.m001974" /inference="similar to AA sequence:ricco:29693.m001974" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc729t2_C1; inference alignment:Newbler:10:TSA:cgbaB_g06088t00001" mRNA complement(join(22669520..22669858,22670108..22670341, 22670916..22670996,22671244..22671341,22672381..22672533, 22673157..22673212,22673426..22673585,22674076..22674306, 22674550..22674658,22675426..22675900,22677921..22678148)) /locus_tag="TCM_029451" /product="Ornithine-delta-aminotransferase isoform 1" /inference="alignment:exonerate- protein:2:ricco:29693.m001974" /inference="similar to AA sequence:ricco:29693.m001974" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06088t00001" CDS complement(join(22669699..22669858,22670108..22670341, 22670916..22670996,22671244..22671341,22673157..22673212, 22673426..22673585,22674076..22674306,22674550..22674658, 22675426..22675580)) /locus_tag="TCM_029451" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29693.m001974" /codon_start=1 /product="Ornithine-delta-aminotransferase isoform 2" /protein_id="EOY27659.1" /db_xref="TAIR:AT5G46180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNK4" /translation="MAATRKPLLSLLSRVSRASRRSYGAVAEGSTSSSPSSSNHLINL EYEYSAHNYHPVPVVFSQAKGSSIWDPEGKKYLDFLSAYSAVNQGHCHPKITKAFQEQ AERLTLSSRAFYNDRFPVFAERLTSMFGYEMVLPMNTGAEGVETALKLARKWGYEKKK IPKDEAIIVSCCGCFHGRTLAVISMSCDNEATRGFGLLLPGHVKVDFGDDVALEKIFE EHGHRIAGFLFEPIQGEAGILGKALGGGVIPVSAVLADKDVMLCIRPGEHGSTFGGNP LASAVAIASLDVIQEEKLAERSAHLGQELLHQLLKIQEQFPNYIKEVRGRGLFTAVEF NSRTLFPVSAYDICLKMKERGVLAKPTHDTIVRLTPPLCMSPDELQEGSKVLRDVLEL DLPNLQKTKPKDSPTTATICDRCGRNLYDSSDKDL" CDS complement(join(22669699..22669858,22670108..22670341, 22670916..22670996,22671244..22671341,22672381..22672533, 22673157..22673212,22673426..22673585,22674076..22674306, 22674550..22674658,22675426..22675580)) /locus_tag="TCM_029451" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29693.m001974" /codon_start=1 /product="Ornithine-delta-aminotransferase isoform 1" /protein_id="EOY27658.1" /db_xref="TAIR:AT5G46180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNK4" /translation="MAATRKPLLSLLSRVSRASRRSYGAVAEGSTSSSPSSSNHLINL EYEYSAHNYHPVPVVFSQAKGSSIWDPEGKKYLDFLSAYSAVNQGHCHPKITKAFQEQ AERLTLSSRAFYNDRFPVFAERLTSMFGYEMVLPMNTGAEGVETALKLARKWGYEKKK IPKDEAIIVSCCGCFHGRTLAVISMSCDNEATRGFGLLLPGHVKVDFGDDVALEKIFE EHGHRIAGFLFEPIQGEAGVIIPPEGYLKAVRELCSKYNILMIADEIQSGLARTGKML ACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIRPGEHGSTFGGNPLASAVAI ASLDVIQEEKLAERSAHLGQELLHQLLKIQEQFPNYIKEVRGRGLFTAVEFNSRTLFP VSAYDICLKMKERGVLAKPTHDTIVRLTPPLCMSPDELQEGSKVLRDVLELDLPNLQK TKPKDSPTTATICDRCGRNLYDSSDKDL" gene complement(22678191..22686127) /locus_tag="TCM_029452" /note="dbxref CacaoGD:Thecc1EG029452" mRNA complement(join(22678191..22678924,22679382..22679478, 22679581..22679636,22680915..22681181,22681311..22681550, 22681670..22682170,22682723..22683336,22683854..22684425)) /locus_tag="TCM_029452" /product="RNA-binding KH domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g10330.1" /inference="similar to AA sequence:Phytozome:Glyma08g10330.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:PASA:2:TSA:puevd3b028479t1a2; alternateUTRof:Thecc1EG029452t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6095t1" mRNA complement(join(22678191..22678924,22679382..22679478, 22679581..22679636,22680915..22681181,22681311..22681550, 22681670..22682170,22682723..22683339,22683854..22684038)) /locus_tag="TCM_029452" /product="RNA-binding KH domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g10330.1" /inference="similar to AA sequence:Phytozome:Glyma08g10330.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6095t1" CDS complement(join(22678793..22678924,22679382..22679478, 22679581..22679636,22680915..22681181,22681311..22681550, 22681670..22682170,22682723..22683316)) /locus_tag="TCM_029452" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNA-binding KH domain-containing protein isoform 1" /protein_id="EOY27660.1" /db_xref="Phytozome:Glyma08g10330.1" /db_xref="TAIR:AT5G46190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C5YIF0" /translation="MGESAKRHRGQRDNDGDSRNQKRRLNDKNEKNNDELVVYRILCP DVVIGSVIGKSGKVINLIRQETRAKVKVVDPYPGAKDRVITIYCYVKDKEEVEVDDEF NDKEPLCAAQDALLRVHAAIANAVALIGDSDQKRTDRYGEECQILVPSSQSANIIGKA GTTIKKLRGKTRTIIKVTAKDAGDPNHSCAMDFDNFIQITGEPEAVKKALFAVSAIMY KFSPREEIPLETTVAEAPPAPSIIIPSDVPIYPPGGLYPNPDPTVPSRSVPPILGAAH VPDLQGYADTGSTWPVYSSALPVVSGFGGASRSEELKIRVLCPFDKIGRVIGRGGGTI KSIRQASGARIEVDDTKADRDECIITVTATESPDDLKSMAVEAVLLLQGKINDDDDNS VTMRLLVPSKVIGCVIGKGGSIINEIRKRTKADVRISKGNKPKCADANDELVELAGKV NNVRDALIQIVLRLRDDVLKEKDSGPNPSVGADSFYSSSASLAVPSLLPSVPPVPPLA FDQRAESGSGLGVLPTSSLYGYGTLPMGESGYGSMSSYSSKLYGGLHPSSTLEILIPA NAVGKVMGKGGLNLTNIRKISGAMIEISESKSSRGERVALITGTLQQKREAENLIQAF IMAT" CDS complement(join(22678793..22678924,22679382..22679478, 22679581..22679636,22680915..22681181,22681311..22681550, 22681670..22682170,22682723..22683316)) /locus_tag="TCM_029452" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNA-binding KH domain-containing protein isoform 1" /protein_id="EOY27661.1" /db_xref="Phytozome:Glyma08g10330.1" /db_xref="TAIR:AT5G46190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C5YIF0" /translation="MGESAKRHRGQRDNDGDSRNQKRRLNDKNEKNNDELVVYRILCP DVVIGSVIGKSGKVINLIRQETRAKVKVVDPYPGAKDRVITIYCYVKDKEEVEVDDEF NDKEPLCAAQDALLRVHAAIANAVALIGDSDQKRTDRYGEECQILVPSSQSANIIGKA GTTIKKLRGKTRTIIKVTAKDAGDPNHSCAMDFDNFIQITGEPEAVKKALFAVSAIMY KFSPREEIPLETTVAEAPPAPSIIIPSDVPIYPPGGLYPNPDPTVPSRSVPPILGAAH VPDLQGYADTGSTWPVYSSALPVVSGFGGASRSEELKIRVLCPFDKIGRVIGRGGGTI KSIRQASGARIEVDDTKADRDECIITVTATESPDDLKSMAVEAVLLLQGKINDDDDNS VTMRLLVPSKVIGCVIGKGGSIINEIRKRTKADVRISKGNKPKCADANDELVELAGKV NNVRDALIQIVLRLRDDVLKEKDSGPNPSVGADSFYSSSASLAVPSLLPSVPPVPPLA FDQRAESGSGLGVLPTSSLYGYGTLPMGESGYGSMSSYSSKLYGGLHPSSTLEILIPA NAVGKVMGKGGLNLTNIRKISGAMIEISESKSSRGERVALITGTLQQKREAENLIQAF IMAT" mRNA complement(join(22679609..22679636,22679798..22679853, 22680915..22681181,22681311..22681550,22681670..22682170, 22682723..22683558)) /locus_tag="TCM_029452" /product="RNA-binding KH domain-containing protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g10330.1" /inference="similar to AA sequence:Phytozome:Glyma08g10330.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc715t3; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc715t12; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6095t1" mRNA complement(join(<22679612..22679636,22680246..22680467, 22680911..22681181,22681311..22681550,22681670..22682170, 22682723..22683339,22683854..22684407,22685508..22686127)) /locus_tag="TCM_029452" /product="RNA-binding KH domain-containing protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g10330.1" /inference="similar to AA sequence:Phytozome:Glyma08g10330.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial3; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc704t17; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc715t12; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6095t1" CDS complement(join(<22679614..22679636,22680246..22680467, 22680911..22681181,22681311..22681550,22681670..22682170, 22682723..22683316)) /locus_tag="TCM_029452" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="RNA-binding KH domain-containing protein isoform 4" /protein_id="EOY27663.1" /db_xref="Phytozome:Glyma08g10330.1" /db_xref="TAIR:AT5G46190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C5YIF0" /translation="MGESAKRHRGQRDNDGDSRNQKRRLNDKNEKNNDELVVYRILCP DVVIGSVIGKSGKVINLIRQETRAKVKVVDPYPGAKDRVITIYCYVKDKEEVEVDDEF NDKEPLCAAQDALLRVHAAIANAVALIGDSDQKRTDRYGEECQILVPSSQSANIIGKA GTTIKKLRGKTRTIIKVTAKDAGDPNHSCAMDFDNFIQITGEPEAVKKALFAVSAIMY KFSPREEIPLETTVAEAPPAPSIIIPSDVPIYPPGGLYPNPDPTVPSRSVPPILGAAH VPDLQGYADTGSTWPVYSSALPVVSGFGGASRSEELKIRVLCPFDKIGRVIGRGGGTI KSIRQASGARIEVDDTKADRDECIITVTATESPDDLKSMAVEAVLLLQGKINDDDDNS VTMRLLVPSKVIGCVIGKGGSIINEIRKRTKADVRISKGNKPKCADANDELVELAGKV NNVRDALIQIVLRLRDDVLKEKDSGPNPSVGADSFYSSSASLAVPSLLPSVPPVPPLA FDQRAESGSGLGVLPTSSLYGYGTLPVSDGTPLTSAGHTLCSPREPCPPSPHSQGELH PSPSPLAWEHRSPLGEICTPRGVRSVGEGDPAGARSGTPAAARDGRKWLWV" CDS complement(join(22679836..22679853,22680915..22681181, 22681311..22681550,22681670..22682170,22682723..22683349)) /locus_tag="TCM_029452" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RNA-binding KH domain-containing protein isoform 3" /protein_id="EOY27662.1" /db_xref="Phytozome:Glyma08g10330.1" /db_xref="TAIR:AT5G46190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C5YIF0" /translation="MISAVDLYSKTMGESAKRHRGQRDNDGDSRNQKRRLNDKNEKNN DELVVYRILCPDVVIGSVIGKSGKVINLIRQETRAKVKVVDPYPGAKDRVITIYCYVK DKEEVEVDDEFNDKEPLCAAQDALLRVHAAIANAVALIGDSDQKRTDRYGEECQILVP SSQSANIIGKAGTTIKKLRGKTRTIIKVTAKDAGDPNHSCAMDFDNFIQITGEPEAVK KALFAVSAIMYKFSPREEIPLETTVAEAPPAPSIIIPSDVPIYPPGGLYPNPDPTVPS RSVPPILGAAHVPDLQGYADTGSTWPVYSSALPVVSGFGGASRSEELKIRVLCPFDKI GRVIGRGGGTIKSIRQASGARIEVDDTKADRDECIITVTATESPDDLKSMAVEAVLLL QGKINDDDDNSVTMRLLVPSKVIGCVIGKGGSIINEIRKRTKADVRISKGNKPKCADA NDELVELAGKVNNVRDALIQIVLRLRDDVLKEKDSGPNPSVGADSFYSSSASLAVPSL LPSVPPVPPLAFDQRAESGSGLGVLPTSSLYGYGTLPLRAGM" mobile_element complement(22681246..22681307) /note="source:CACAO_PIF_E144_scaffold_10 5991 6051" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 22684133..22686629 /locus_tag="TCM_029454" /note="dbxref CacaoGD:Thecc1EG029454" mRNA join(22684133..22684414,22685515..22685869, 22686170..22686629) /locus_tag="TCM_029454" /product="Small nuclear ribonucleoprotein family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene30363" /inference="similar to AA sequence:frave:gene30363" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16423t2" mRNA join(22684137..22684414,22685528..22686116) /locus_tag="TCM_029454" /product="Small nuclear ribonucleoprotein family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene30363" /inference="similar to AA sequence:frave:gene30363" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6093t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16423t2" CDS join(22684340..22684414,22685528..22685875) /locus_tag="TCM_029454" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene30363" /codon_start=1 /product="Small nuclear ribonucleoprotein family protein isoform 2" /protein_id="EOY27665.1" /db_xref="TAIR:AT4G18372.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H3B8" /translation="MKHPQTIIQGEGFNYSSLNLFLLSLCTSMEQEVGESLIQLGSSD DPNSSSTDPVTRVRKLLFRRMLVGIKDGRFFLGTFHCIDKQGNIILQDSIEYRSTRHS SPSPMEQRCLGLILIPFSCRTSCHVDCSINEQLSLLKV" mobile_element 22684449..22684464 /note="source:CACAO_M_S_E4863_F51_scaffold_1 5665 5733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22684465..22684525) /note="source:CACAO_PIF_E144_scaffold_10 5995 6055" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22684496..22684549) /note="source:CACAO_M_S_E51240_F74_scaffold_4 2235 2288" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(22685537..22685869,22686170..22686208) /locus_tag="TCM_029454" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene30363" /codon_start=1 /product="Small nuclear ribonucleoprotein family protein isoform 1" /protein_id="EOY27664.1" /db_xref="TAIR:AT4G18372.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H3B8" /translation="MEQEVGESLIQLGSSDDPNSSSTDPVTRVRKLLFRRMLVGIKDG RFFLGTFHCIDKQGNIILQDSIEYRSTRHSSPSPMEQRCLGLILIPFSCRTSCHVDCS INEQLSLLKAKNEIKECSYGR" gene complement(22686639..22687998) /locus_tag="TCM_029455" /note="dbxref CacaoGD:Thecc1EG029455" mRNA complement(join(22686639..22687069,22687174..22687480, 22687641..22687998)) /locus_tag="TCM_029455" /product="Glutathione S-transferase TAU 22, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s42830.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032364t1" /inference="similar to AA sequence:Phytozome:Glyma15g40200.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1975t1" CDS complement(join(22686896..22687069,22687174..22687480, 22687641..22687747)) /locus_tag="TCM_029455" /note="paralog of Thecc1EG032364t1" /codon_start=1 /product="Glutathione S-transferase TAU 22, putative" /protein_id="EOY27666.1" /db_xref="Phytozome:Glyma15g40200.1" /db_xref="TAIR:AT1G78340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7C9" /translation="MLFNLECGFKTKIFKFETDRSRNIKAKEEKIRRQKRCHSLDSWP SPFGMRVRIALDLKGIKYEYKEENLLEQKNPLLVESNPDYKKVPVLIHKGRPICESLI IIQYIHAIWKDRFPLMPSDPYQQAQARLWAEFVEKKLYDWGKMIWMNKGEEQEKATVE FIESLKLLEEKLGEKPSFGGETMGFLDVTLVSHYS" gene complement(22688639..22692813) /locus_tag="TCM_029456" /note="dbxref CacaoGD:Thecc1EG029456" mRNA complement(join(22688639..22689025,22689482..22689556, 22689915..22690002,22690300..22690422,22690580..22690669, 22690800..22690862,22691684..22691833,22692379..22692813)) /locus_tag="TCM_029456" /product="Protease degS, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02330.1" /inference="similar to AA sequence:ricco:29693.m001982" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:PASA:2:TSA:puevd3b028482t1a2; inference alignment:Newbler:10:TSA:cgbaL_g03272t00002" mRNA complement(join(22688639..22689031,22689482..22689556, 22689915..22690002,22690300..22690422,22690580..22690669, 22690800..22690862,22691684..22691833,22692379..22692813)) /locus_tag="TCM_029456" /product="Protease degS, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02330.1" /inference="similar to AA sequence:ricco:29693.m001982" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03272t00002" CDS complement(join(22688925..22689025,22689482..22689556, 22689915..22690002,22690300..22690422,22690580..22690669, 22690800..22690862,22691684..22691833,22692379..22692633)) /locus_tag="TCM_029456" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29693.m001982" /codon_start=1 /product="Protease degS, putative isoform 2" /protein_id="EOY27668.1" /db_xref="TAIR:AT4G18370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0Y6" /translation="MVVMASLHTLPSPLPTTTTSSSSESSDNKSLVITRRRAIVSGST VAVASLLQLSNPVSSLYSAIALQQQDEELDEEEDRIVRLFQETSPSVVFIKDLELAKI PKSSSQEVTLAEDEDAKVEGTGSGFIWDKFGHIVTNYHVVDKLATDQSGLQRCKVFLV DARGTSFYKEGKIVGIDPAYDLAVLKVDVEGYELKPVVLGTSRDLRVGQSCFAIGNPF GYENTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINAGNSGGPLIDSYGHVIGVNTA TFTRKGVSSGVNFAIPIDTVVRTVPYLIVYGTPYSDRF" CDS complement(join(22688925..22689031,22689482..22689556, 22689915..22690002,22690300..22690422,22690580..22690669, 22690800..22690862,22691684..22691833,22692379..22692633)) /locus_tag="TCM_029456" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29693.m001982" /codon_start=1 /product="Protease degS, putative isoform 1" /protein_id="EOY27667.1" /db_xref="TAIR:AT4G18370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0Y6" /translation="MVVMASLHTLPSPLPTTTTSSSSESSDNKSLVITRRRAIVSGST VAVASLLQLSNPVSSLYSAIALQQQDEELDEEEDRIVRLFQETSPSVVFIKDLELAKI PKSSSQEVTLAEDEDAKVEGTGSGFIWDKFGHIVTNYHVVDKLATDQSGLQRCKVFLV DARGTSFYKEGKIVGIDPAYDLAVLKVDVEGYELKPVVLGTSRDLRVGQSCFAIGNPF GYENTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINAGNSGGPLIDSYGHVIGVNTA TFTRKGTGVSSGVNFAIPIDTVVRTVPYLIVYGTPYSDRF" mobile_element 22691369..22691656 /note="source:CACAO_M_E71755_F283_scaffold_10 5 339" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22696512..22696730 /note="source:INTACT687_F13_scaffold_3-int 1787 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22698141..22698283 /note="source:CACAO_M_S_E5860_F197_scaffold_2 11487 11629" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22698156..22703583 /note="source:CACAO_M_E44088_F76_scaffold_5 31 5475" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22703584..22703652) /note="source:CACAO_M_E57337_F76_scaffold_9 5224 5256" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22704616..22705788) /locus_tag="TCM_029457" /note="dbxref CacaoGD:Thecc1EG029457" mRNA complement(22704616..22705788) /locus_tag="TCM_029457" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29693.m001983" /inference="similar to AA sequence:ricco:29693.m001983" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14424t00001" CDS complement(22704860..22705681) /locus_tag="TCM_029457" /note="dbxref ricco:29693.m001983" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27669.1" /db_xref="TAIR:AT2G34610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0Y7" /translation="MTIPSANLMENPVKALKSKSYQKAKGMSFFAFLFSIVIYISIFY ISSLSPSALFNNTKFWFVISNTLILIIAADYGAYSSSKEKHDLYDEYASHSQARSAAA PSFVSQYPEIVKKSTPKEEETSLKEKKEYIVAEMNEISERILEVVKIEPENPTDNFQA KSQQEHEHPMKADNEACDQVQVNKKIEPKTIRRSKSHKVKRVTFHDKKNILQRSETEK HEARAKEKESSAEENEFSTMSDEELNRRVEEFIQKFNRQIRLQAGTRTRQFLEYE" mobile_element complement(22708548..22708626) /note="source:CACAO_M_E42369_F96_scaffold_5 714 761" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22708577..22708636) /note="source:scaffold_3_CACTA_0390 1140 1201" /mobile_element_type="transposon:TIR/CACTA" gene 22710769..22712703 /locus_tag="TCM_029458" /note="dbxref CacaoGD:Thecc1EG029458" mRNA 22710769..22712703 /locus_tag="TCM_029458" /product="Serine-threonine protein kinase, plant-type, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021521001" /inference="similar to AA sequence:ricco:29693.m001984" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g5971t1" CDS 22710769..22712085 /locus_tag="TCM_029458" /note="dbxref ricco:29693.m001984" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY27670.1" /db_xref="TAIR:AT2G42800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0Y8" /translation="MEEGELLGLFDVMGSLLEEPGWAEVHPEPCTDTPWPGVECEIGQ DPPIFHVTTIHIGPDVATPPCKPSAKISDSLPKLPYLRTLSIFNCFVTSQVTLSPALF GSLSSLEHLSLQSNPSLSGEVPPSLAKISGLRVISLSQNNLQGNIPRELGGLVNLEQL DLSYNNLSGEIPEDIGGLKSLTILDLSSNGLEGPVPFSLGQLQRLQKVDLCSNRLHGR IPPEFGKLNRLVLLDLSHNFINGPIPETLSGLEQLQYLIFDYNPINALMPLFVGSLKR LTSISFSGCGLMGPIPNSLSSLKNLTALSLGNNSLTGTIPPSLGSLPNLDQLNLSHNK LSGELLLSEEFIKRLGKRLDVRGNSRLCTSYQLSRKNISTYLQTPACLGTEGIVDNRT CPEEQPDDFKGRKPYWYYGQTSSRAPLQDPQFISTCFVLFHVLSFL" mobile_element complement(22713245..22713663) /note="source:CACAO_PIF_E119_scaffold_3 4242 4666" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 22713553..22713682 /note="source:scaffold_2_CACTA_0281 4743 4873" /mobile_element_type="transposon:TIR/CACTA" gene 22715490..22720650 /locus_tag="TCM_029459" /note="dbxref CacaoGD:Thecc1EG029459" mRNA join(22715490..22715787,22716235..22716406, 22716601..22716725,22717372..22717418,22717556..22717633, 22718139..22718263,22718529..22718595,22718683..22718745, 22718835..22718904,22719000..22719100,22719436..22719540, 22719927..22720650) /locus_tag="TCM_029459" /product="Aldolase-type TIM barrel family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29693.m001985.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032344t4" /inference="similar to AA sequence:ricco:29693.m001985" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b028485t1a2; alternateUTRof:Thecc1EG029459t1; inference alignment:Newbler:10:TSA:cgbaP1_g02996t00001" mRNA join(22715547..22715649,22716235..22716406, 22716601..22716725,22717372..22717418,22717556..22717633, 22718139..22718263,22718529..22718595,22718683..22718745, 22718835..22718904,22719000..22719100,22719436..22719540, 22719927..22720650) /locus_tag="TCM_029459" /product="Aldolase-type TIM barrel family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29693.m001985.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032344t4" /inference="similar to AA sequence:ricco:29693.m001985" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6055t2; alternateUTRof:Thecc1EG029459t1; inference alignment:Newbler:10:TSA:cgbaP1_g02996t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc507t7_C2" mRNA join(22715599..22715721,22716235..22716406, 22716601..22716725,22717372..22717418,22717556..22717633, 22718139..22718263,22718529..22718595,22718683..22718745, 22718835..22718904,22719000..22719100,22719436..22719540, 22719927..22720619) /locus_tag="TCM_029459" /product="Aldolase-type TIM barrel family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29693.m001985.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032344t4" /inference="similar to AA sequence:ricco:29693.m001985" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02996t00001" CDS join(22716270..22716406,22716601..22716725, 22717372..22717418,22717556..22717633,22718139..22718263, 22718529..22718595,22718683..22718745,22718835..22718904, 22719000..22719100,22719436..22719540,22719927..22720112) /locus_tag="TCM_029459" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29693.m001985; paralog of Thecc1EG032344t4" /codon_start=1 /product="Aldolase-type TIM barrel family protein isoform 1" /protein_id="EOY27671.1" /db_xref="TAIR:AT3G14420.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6YT73" /translation="MEITNVTEYEAIAKEKLPKMVYDYYASGAEDQWTLKENRNAFSR ILFRPRILVDVSKIDMTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTI MTLSSWATSSVEEVASTGPGIRFFQLYVCKDRNVVAQLVRRAERAGFKAIALTVDTPR LGRREADIKNRFTLPPFLTLKNFEGLDLGKMDKTDDSGLASYVAGQVDRSLSWKDVKW LQTITSLPILVKGVLTAEDARLAIQAGAAGIIVSNHGARQLDFVPATIMALEEVVKAA QGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEF ELTMALNGCRSLKEITRNHIVTDWDQPRVVPRL" CDS join(22716270..22716406,22716601..22716725, 22717372..22717418,22717556..22717633,22718139..22718263, 22718529..22718595,22718683..22718745,22718835..22718904, 22719000..22719100,22719436..22719540,22719927..22720112) /locus_tag="TCM_029459" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29693.m001985; paralog of Thecc1EG032344t4" /codon_start=1 /product="Aldolase-type TIM barrel family protein isoform 1" /protein_id="EOY27672.1" /db_xref="TAIR:AT3G14420.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6YT73" /translation="MEITNVTEYEAIAKEKLPKMVYDYYASGAEDQWTLKENRNAFSR ILFRPRILVDVSKIDMTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTI MTLSSWATSSVEEVASTGPGIRFFQLYVCKDRNVVAQLVRRAERAGFKAIALTVDTPR LGRREADIKNRFTLPPFLTLKNFEGLDLGKMDKTDDSGLASYVAGQVDRSLSWKDVKW LQTITSLPILVKGVLTAEDARLAIQAGAAGIIVSNHGARQLDFVPATIMALEEVVKAA QGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEF ELTMALNGCRSLKEITRNHIVTDWDQPRVVPRL" CDS join(22716270..22716406,22716601..22716725, 22717372..22717418,22717556..22717633,22718139..22718263, 22718529..22718595,22718683..22718745,22718835..22718904, 22719000..22719100,22719436..22719540,22719927..22720112) /locus_tag="TCM_029459" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29693.m001985; paralog of Thecc1EG032344t4" /codon_start=1 /product="Aldolase-type TIM barrel family protein isoform 1" /protein_id="EOY27673.1" /db_xref="TAIR:AT3G14420.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6YT73" /translation="MEITNVTEYEAIAKEKLPKMVYDYYASGAEDQWTLKENRNAFSR ILFRPRILVDVSKIDMTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTI MTLSSWATSSVEEVASTGPGIRFFQLYVCKDRNVVAQLVRRAERAGFKAIALTVDTPR LGRREADIKNRFTLPPFLTLKNFEGLDLGKMDKTDDSGLASYVAGQVDRSLSWKDVKW LQTITSLPILVKGVLTAEDARLAIQAGAAGIIVSNHGARQLDFVPATIMALEEVVKAA QGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEF ELTMALNGCRSLKEITRNHIVTDWDQPRVVPRL" gene complement(22723584..22724937) /locus_tag="TCM_029461" /note="dbxref CacaoGD:Thecc1EG029461" mRNA complement(join(22723584..22723934,22724543..22724639, 22724760..22724937)) /locus_tag="TCM_029461" /product="Jasmonate-zim-domain protein 8, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007188001" /inference="similar to AA sequence:Phytozome:GSVIVT01021514001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16425t1" CDS complement(join(22723734..22723934,22724543..22724639, 22724760..22724827)) /locus_tag="TCM_029461" /codon_start=1 /product="Jasmonate-zim-domain protein 8, putative" /protein_id="EOY27674.1" /db_xref="Phytozome:GSVIVT01021514001" /db_xref="TAIR:AT1G30135.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TK98" /translation="MRRNCNLELRLLPSSYSGGHHDMMEESSESPQNQQQQLTIFYNG RVCVCDVTELQARAILMLANRETDERITTPTGSGSVPASPTLQSQLYSPNTGMTMKRS LQRFLQKRKNRIQATSPYH" mobile_element 22725663..22725695 /note="source:MITE_hAT_20 950 1071" /mobile_element_type="transposon:TIR/MITE" mobile_element 22725696..22725767 /note="source:CACAO_on_E192_scaffold_8 1031 1132" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22726059..22726145) /note="source:scaffold_9_CACTA_0946 17773 17859" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22726512..22728929) /note="source:CACAO_M_S_E66657_F76_scaffold_5 6115 8525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22726768..22731577) /note="source:INTACT321_F197_scaffold_2-int 395 5227" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22729453..22731885 /note="source:CACAO_on_SS_E42_scaffold_2 267 2634" /mobile_element_type="transposon:TIR/Mutator" gene complement(22735913..22742498) /locus_tag="TCM_029462" /note="dbxref CacaoGD:Thecc1EG029462" mRNA complement(join(22735913..22736178,22739289..22739562, 22740616..22740816,22741535..22741627,22741841..22741952, 22742052..22742498)) /locus_tag="TCM_029462" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02250.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021513001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09949t00001" gene 22736349..22737563 /locus_tag="TCM_029463" /note="dbxref CacaoGD:Thecc1EG029463" mRNA join(22736349..22736839,22737299..22737563) /locus_tag="TCM_029463" /product="Uncharacterized protein" /note="quality class is strong-utrpoor, express is strong, homology is paralog strong, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1477t1" CDS join(22736806..22736839,22737299..22737435) /locus_tag="TCM_029463" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27677.1" /translation="MELADVFSQQIGSMMNLVIRCFLVMTCFKTCVAMEMPVLMSWIK LVKMMGSGKKNS" mobile_element 22736960..22737914 /note="source:scaffold_10_CACTA_0130 7927 9027" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22737915..22738296) /note="source:CACAO_on_E565_scaffold_5 752 1142" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 22738297..22738795 /note="source:scaffold_10_CACTA_0130 9028 9605" /mobile_element_type="transposon:TIR/CACTA" mRNA complement(join(22739030..22739562,22741535..22741627, 22741841..22741952,22742052..22742498)) /locus_tag="TCM_029462" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02250.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:PASA:2:TSA:puevd3b028487t1a2; inference alignment:Newbler:10:TSA:cgbaB_g09949t00001" CDS complement(join(22739329..22739562,22741535..22741627, 22741841..22741952,22742052..22742359)) /locus_tag="TCM_029462" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY27676.1" /db_xref="TAIR:AT1G30130.2" /translation="MEIFYLFCSILSAFFTSLAFSLLLPFRFLLPRQRRPPPLSTTEN EHVSLYEGTVWHERRRPVRHSFRYSVRYALFDLDNAPKAPPDHLSANEARRTAETTGP VFLLTIPPSVGYEQNPLSLYYCYDLEGSTKLLKKCIAEVTNTPWGERVRFVLDPNSDL VAKPLHVSPFMAIKLWWKNVPFIQHPRYTNPSYREEALKHDRKLQCCRAVGEKKDEFM QVGGSCPGIVAERNHGERLFVWRDAKWPWT" CDS complement(join(22739329..22739562,22740616..22740816, 22741535..22741627,22741841..22741952,22742052..22742359)) /locus_tag="TCM_029462" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27675.1" /db_xref="Phytozome:GSVIVT01021513001" /db_xref="TAIR:AT1G30130.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYV6" /translation="MEIFYLFCSILSAFFTSLAFSLLLPFRFLLPRQRRPPPLSTTEN EHVSLYEGTVWHERRRPVRHSFRYSVRYALFDLDNAPKAPPDHLSANEARRTAETTGP VFLLTIPPSVGYEQNPLSLYYCYDLEGSTKLLKKCIAEVTNTPWGERVRFVLDPNSDL VAKPLHVSPFMDMRGNWSVKVNAPGDNLLVAISVQHPELGDYFLATLKAKRISPALVH DHALFFWLMPHKVALWIYWHAIKLWWKNVPFIQHPRYTNPSYREEALKHDRKLQCCRA VGEKKDEFMQVGGSCPGIVAERNHGERLFVWRDAKWPWT" mobile_element complement(22742568..22743724) /note="source:CACAO_PIF_E144_scaffold_10 1208 2391" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 22745282..22748676 /locus_tag="TCM_029464" /note="dbxref CacaoGD:Thecc1EG029464" mRNA join(22745282..22745474,22745567..22745673, 22745770..22745813,22747051..22748250,22748411..22748676) /locus_tag="TCM_029464" /product="Transketolase family protein" /inference="alignment:exonerate- protein:2:ricco:29693.m001991" /inference="similar to AA sequence:ricco:29693.m001991" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc306t8" CDS join(22745366..22745474,22745567..22745673, 22745770..22745813,22747051..22748023) /locus_tag="TCM_029464" /note="dbxref ricco:29693.m001991" /codon_start=1 /product="Transketolase family protein" /protein_id="EOY27678.1" /db_xref="TAIR:AT2G34590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O24458" /translation="MAAIFQGVGAAAALSSSPSNSFDSKKLLFSPRRSFSVKKGASVV VVRSDGNVNLDLNPRGRRAQQLIANAVATKADSSATSSSSKPGHELLLFEALREGLEE EMERDASVCVMGEDVGHYGGSYKVTKGLATKFGDLRVLDTPIAENSFTGMGIGAAMTG LRPVVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQR LESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEDYIC NLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGN SVKKTHRVLIVEECMRTGGIGASLTAAINENFLDYLDAPIMCLSSQDVPTPYAGTLEE WTVVQPAQIVTAVEQLCH" mobile_element 22754635..22755335 /note="source:CACAO_on_E241_scaffold_112 436 1141" /mobile_element_type="transposon:TIR/hAT" mobile_element 22757668..22763168 /note="source:INTACT566_F257_scaffold_7-int 1 5505" /mobile_element_type="retrotransposon:LTR/Copia" gene 22763253..22765311 /locus_tag="TCM_029467" /note="dbxref CacaoGD:Thecc1EG029467" mRNA join(22763253..22763325,22763778..22764223, 22764969..22765311) /locus_tag="TCM_029467" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.12 coverage" CDS join(22764192..22764223,22764969..22765140) /locus_tag="TCM_029467" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27679.1" /translation="MKLGAKLVGRGSLCHEKRGRVRSYGDHMLMVMGMMRKKILKLGL RPFVRPALIWRPLSHSDQTIYCP" gene complement(22769314..22771928) /locus_tag="TCM_029468" /note="dbxref CacaoGD:Thecc1EG029468" mRNA complement(22769314..22771928) /locus_tag="TCM_029468" /product="Nine-cis-epoxycarotenoid dioxygenase 5" /inference="alignment:exonerate-protein:2:frave:gene30616" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032343t1" /inference="similar to AA sequence:ricco:29693.m001992" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage" CDS complement(22769916..22771757) /locus_tag="TCM_029468" /note="dbxref ricco:29693.m001992; paralog of Thecc1EG032343t1" /codon_start=1 /product="Nine-cis-epoxycarotenoid dioxygenase 5" /protein_id="EOY27680.1" /db_xref="TAIR:AT1G30100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M9F5" /translation="MAFSTGHWAKAQISRPLASSSSTVDLGISPTSISWKKRQPNKTT LRRTNNINIIHSALHSPSVLHFPKQPYQNPVIPREETPVNAKPKTHQPQQQQPQWNLL QKAAAMALDMAESALVSRELQHPLPKTADPRVQISGNFAPVPEQPVKQSLPINGTIPS CINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIDNGNASYACRFTETQRLLQEKEL GRPVFPKAIGELHGHSGIARLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRLLAMSE DDLPYHVRITSSGDLETVGRYNFDDQLKSTMIAHPKIDPFSKELFALSYDVIHKPYLK YFRFLPDGKKSPNVEIPLPVPTMMHDFAITENFVVIPDQQVVFKLQEMIIGGSPVIYD KNKKSRFGILSKNASDAKDIIWVESPDTFCFHLWNAWEEPESDEVVVIGSCMTPPDSI FNECDESLKSVLSEIRLNLKTGESIRRPIISESEQVNLEAGMVNRNRLGRKTRYAYLA IAEPWPKVSGFAKVDLFTGEVKKHIYGDRRYGGEPFFLPRDDNCESAEDDGYILSFVH DEKTWKSELQIVNAMNLQLEASIKLQSRVPYGFHGTFIDAKALVNQA" mobile_element complement(22775793..22775860) /note="source:CACAO_M_S_E4413_F3_scaffold_1 3014 3075" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22776552..22777409 /locus_tag="TCM_029469" /note="dbxref CacaoGD:Thecc1EG029469" mRNA 22776552..22777409 /locus_tag="TCM_029469" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.23 coverage" CDS 22777054..22777320 /locus_tag="TCM_029469" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27681.1" /translation="MLDHNSELLFVQKISTAVKQQKSREAGRLSISALYRVARKILLQ PTCDKGIDISLTNEAFSQPILLASDIDNPPSVFVTWGQLYYLLK" gene 22782997..22787548 /locus_tag="TCM_029470" /note="dbxref CacaoGD:Thecc1EG029470" mRNA join(22782997..22783182,22783932..22783990, 22785761..22786405,22786526..22787548) /locus_tag="TCM_029470" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc524t3" mRNA join(22785712..22786417,22786526..22787548) /locus_tag="TCM_029470" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:PASA:2:TSA:puevd3b028494t1a2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc524t3" CDS join(22785769..22786417,22786526..22786818) /locus_tag="TCM_029470" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY27683.1" /translation="MNFLLAREDAEKHAGTKSCFYCNKVFNNYRALGGHLRIHQEDKT SRTLNYPGRSSNSMDITRNPPVLLPNSQQNSSGGGNNPTPFSRAPPAFDFSRMFYSNE INQASRSKYTGSNPGVSQTQFIMSPDFSYGCGSGATYHSLASRAFAPAGANAVMSPAA FASSGSVVAAGFPIDSSLYLGTNGVCQFNTDEFRISRDGLPPSSGDALQNVQGYNFSP HPCSSVDKGGQYDGRSLLMCEEGKRPYLADGSGGADVMNASKKPKIAPTEHVEPKNPQ KKELSLFMDVDDSISASETCCGAEEEGPVDVDLSLHL" CDS join(22785769..22786405,22786526..22786818) /locus_tag="TCM_029470" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27682.1" /translation="MNFLLAREDAEKHAGTKSCFYCNKVFNNYRALGGHLRIHQEDKT SRTLNYPGRSSNSMDITRNPPVLLPNSQQNSSGGGNNPTPFSRAPPAFDFSRMFYSNE INQASRSKYTGSNPGVSQTQFIMSPDFSYGCGSGATYHSLASRAFAPAGANAVMSPAA FASSGSVVAAGFPIDSSLYLGTNGVCQFNTDEFRISRDGLPPSSGDALQNVQGPHPCS SVDKGGQYDGRSLLMCEEGKRPYLADGSGGADVMNASKKPKIAPTEHVEPKNPQKKEL SLFMDVDDSISASETCCGAEEEGPVDVDLSLHL" gene 22790642..22792249 /locus_tag="TCM_029472" /note="dbxref CacaoGD:Thecc1EG029472" mRNA 22790642..22792249 /locus_tag="TCM_029472" /product="Galactose oxidase/kelch repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g29040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036823t1" /inference="similar to AA sequence:Phytozome:Glyma13g29040.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10317t00001" CDS 22790804..22792021 /locus_tag="TCM_029472" /note="paralog of Thecc1EG036823t1" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein" /protein_id="EOY27684.1" /db_xref="Phytozome:Glyma13g29040.1" /db_xref="TAIR:AT1G30090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C6Z0" /translation="MQRVRLSSQQALVHKLGDSQMTLSPKFRLAVIQSSLLNPSSEFE LSLQGEPLIPGLPDDVALNCLLRLPVESHAACRAVSKRWHLLLGNKERFFTRRKELGF KDPWLFVFAFHKGTGKIQWQVLDLTHFSWHTIPAMPCKDKVCPHGFRCVSIPCKAALF VCGGMVSDVDCPLDLVLKYEIQKNRWTVMNKMITARSFFASGMINGLIYVAGGNSADL FELDAAEVLDPTKGSWHPIASMGTNMASYDSAVLNGKLLVTEGWLWPFFVSPRGQVYD PRTNNWESMAVGLREGWTGSSVVVYGHLFVVSEIERMKLKVYDPDSDSWETIEGPPLP EQICKPFAVNACDNRIYVVGRNLHVAVGYISSLNRTSSSEKKQSFSVRWHVVDAPERL SDLTPSSSQVLFA" gene 22794061..22794959 /locus_tag="TCM_029473" /note="dbxref CacaoGD:Thecc1EG029473" mRNA 22794061..22794959 /locus_tag="TCM_029473" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29693.m001998" /inference="similar to AA sequence:frave:gene30612" /note="quality class is medium-utrpoor, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc943t6" CDS 22794335..22794580 /locus_tag="TCM_029473" /note="dbxref frave:gene30612" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27685.1" /translation="MAAITSAVIAIAGVVLGWIAIEIACKPCLERGREAIDRSLNPDY DPDDDNDNNVRAPLNPSPDLESKADNDTSPSTSIKAV" gene complement(22794979..22803524) /locus_tag="TCM_029474" /note="dbxref CacaoGD:Thecc1EG029474" mRNA complement(join(22794979..22795788,22796075..22796155, 22796288..22796368,22796549..22796629,22796760..22796897, 22797020..22797151,22797251..22797311,22797417..22797523, 22798478..22798531,22798612..22798713,22798856..22798981, 22799140..22799427,22799521..22799643,22799837..22800017, 22800967..22801313,22801415..22801530,22802669..22803524)) /locus_tag="TCM_029474" /product="Cullin-4B isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s08280.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021502001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc529t11" CDS complement(join(22795675..22795788,22796075..22796155, 22796288..22796368,22796549..22796629,22796760..22796897, 22797020..22797151,22797251..22797311,22797417..22797523, 22798478..22798531,22798612..22798713,22798856..22798981, 22799140..22799427,22799521..22799643,22799837..22800017, 22800967..22801313,22801415..22801530,22802669..22802996)) /locus_tag="TCM_029474" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cullin-4B isoform 1" /protein_id="EOY27686.1" /db_xref="Phytozome:GSVIVT01021502001" /db_xref="TAIR:AT5G46210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LGH4" /translation="MSLPPTKRSLSNANSNATASSSSSSSPHFQPSMKKAKSQAVACS LDPNKNGLHHHHNQDDNDVVFDPSSMALDDDSKPDDARAPAAANLSRKKATPPQPAKK LVIKLVKAKPTLPTNFEEETWAKLKSAINAIFLKQPDSCDLEKLYQAVNNLCLHKMGG SLYQRIEKECEEHISAALRSLVGQSPDLVVFLSLVEKCWQDLCDQMLMIRGIALYLDR TYVKQTPNVRSLWDMGLQLFRKHLSLASEVEHKTVTGLLRMIESERLGEAVERTLLNH LLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEMRLHEEHERC LLYLDALTRKPLIATAERQLLERHIPAILDKGFMMLMDGHRIEDLQRMYSLFSRVNAL ESLRQALSSYIRRTGQGIVLDEEKDKDMVPSLLEFKASLDSIWEESFSKNEAFCNTIK DAFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVF EAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINES FKQSSQARIKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSG RRLMWQNSLGHCVLKADFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDSTGIEDK ELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRLKVNAIQMKETVEE NTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIES LIDREYLERDKNNPQIYNYLA" mRNA complement(join(<22796870..22796897,22797052..22797151, 22797251..22797311,22797417..22797523,22798478..22798531, 22798612..22798713,22798856..22798981,22799140..22799427, 22799521..22799643,22799837..22800017,22800967..22801313, 22801415..22801530,22802669..22803226)) /locus_tag="TCM_029474" /product="Cullin-4B isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s08280.1" /inference="similar to AA sequence:ricco:29693.m002002" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc520t3; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc529t11" CDS complement(join(<22796872..22796897,22797052..22797151, 22797251..22797311,22797417..22797523,22798478..22798531, 22798612..22798713,22798856..22798981,22799140..22799427, 22799521..22799643,22799837..22800017,22800967..22801313, 22801415..22801530,22802669..22802996)) /locus_tag="TCM_029474" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29693.m002002" /codon_start=1 /product="Cullin-4B isoform 2" /protein_id="EOY27687.1" /db_xref="TAIR:AT5G46210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LGH4" /translation="MSLPPTKRSLSNANSNATASSSSSSSPHFQPSMKKAKSQAVACS LDPNKNGLHHHHNQDDNDVVFDPSSMALDDDSKPDDARAPAAANLSRKKATPPQPAKK LVIKLVKAKPTLPTNFEEETWAKLKSAINAIFLKQPDSCDLEKLYQAVNNLCLHKMGG SLYQRIEKECEEHISAALRSLVGQSPDLVVFLSLVEKCWQDLCDQMLMIRGIALYLDR TYVKQTPNVRSLWDMGLQLFRKHLSLASEVEHKTVTGLLRMIESERLGEAVERTLLNH LLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEMRLHEEHERC LLYLDALTRKPLIATAERQLLERHIPAILDKGFMMLMDGHRIEDLQRMYSLFSRVNAL ESLRQALSSYIRRTGQGIVLDEEKDKDMVPSLLEFKASLDSIWEESFSKNEAFCNTIK DAFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVF EAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINES FKQSSQARIKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSG RRLMWQNSLGHCVLKADFPKDCSSDVVQR" mobile_element 22804296..22804505 /note="source:scaffold_5_CACTA_0614 1371 1594" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22804925..22805002 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3889 3968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22804962..22805337 /note="source:scaffold_5_CACTA_0614 1586 1940" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22805373..22805412) /note="source:MITE_hAT_24 1 177" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(22805413..22805552) /note="source:CACAO_on_E215_scaffold_3 1 133" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22808269..22809093) /note="source:scaffold_8_CACTA_0855 1773 2529" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22809198..22809890) /note="source:scaffold_4_CACTA_0482 16794 17505" /mobile_element_type="transposon:TIR/CACTA" gene 22812011..22812585 /locus_tag="TCM_029475" /note="dbxref CacaoGD:Thecc1EG029475" mRNA 22812011..22812585 /locus_tag="TCM_029475" /product="VQ motif-containing protein, putative" /inference="alignment:exonerate- protein:2:ricco:29693.m002004" /inference="similar to AA sequence:ricco:29693.m002004" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16437t1" CDS 22812122..22812460 /locus_tag="TCM_029475" /note="dbxref ricco:29693.m002004" /codon_start=1 /product="VQ motif-containing protein, putative" /protein_id="EOY27688.1" /translation="MAATATSQEDVKVVLIDTQYVETDPVSFKSVVQRLTGKDSCVAW IEESSFSGGKTETRVALKGAAPERSCGPLGGCFGGGVSMLTKGLSFKDLDRMILEAPP VDELNWLWAN" gene 22815032..22816278 /locus_tag="TCM_029476" /note="dbxref CacaoGD:Thecc1EG029476" mRNA join(22815032..22815278,22815372..22815598, 22815666..22816278) /locus_tag="TCM_029476" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001655t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(22815185..22815278,22815372..22815598, 22815666..22816070) /locus_tag="TCM_029476" /note="paralog of Thecc1EG001655t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27689.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H021" /translation="MLLLAIVEREAGGQTKNFINQNYVYGLLCKSVHEDPMICFQSWY ELGHGMRNGKVWKMVFYAIAWSIWLFRNEVDFKGKGNSVETFDLIKLRLAWWVKAKWP KLNLCIIMWEEPPLGSLKFNIDAACKGCMGEAGIRGVLKDDKGSMLLIFSKVVGVMDS NAAELMALWEGFQIIVASDWARSHNIIFESNSHNAIIWVLNPHQVSWRMRSTIMKTEG LKLKIVSWSVRQVPCSAHGKRGG" mobile_element complement(22818018..22818073) /note="source:CACAO_hAT_E44_scaffold_1 1071 1127" /mobile_element_type="transposon:TIR/hAT" gene complement(22818505..22819197) /locus_tag="TCM_029477" /note="dbxref CacaoGD:Thecc1EG029477" mRNA complement(22818505..22819197) /locus_tag="TCM_029477" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.53 coverage" CDS complement(22818931..22819161) /locus_tag="TCM_029477" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27690.1" /translation="MVLFNLFLKVIKDDAPTKKKKNKDPESTCSIFQGQAQSRTSRTG PVSFHVHAGNLLTVKKGDLSFYITAHAQITTT" gene 22820859..22823230 /locus_tag="TCM_029478" /note="dbxref CacaoGD:Thecc1EG029478" mRNA join(22820859..22821003,22821155..22822206, 22822471..22823230) /locus_tag="TCM_029478" /product="Glycosyl hydrolase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s13980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015614t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s08320.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6035t1" CDS join(22820934..22821003,22821155..22822206, 22822471..22822557) /locus_tag="TCM_029478" /note="paralog of Thecc1EG015614t1" /codon_start=1 /product="Glycosyl hydrolase superfamily protein" /protein_id="EOY27691.1" /db_xref="Phytozome:POPTR_0011s08320.1" /db_xref="TAIR:AT1G30080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I4R0" /translation="MATFLRRIVVMIHVFVLLSLWFSDYGFLHGVTSLGINYGQVGNN LPPPDRVLDLLSSLKLTKARIYDTNPQILTTFAHSNIELIVTVENQMLPVVMDPQQAL QWVSTHIMPYFPATKITGIAVGNEVFTDDDTSLIGYLVPAIVSIHGALVQLGLDKYIQ VSTPNSLAVLEQSYPPSAGSFKSEVSGVMSQLLQFLSSTGSPFWINAYPYFAYKDAPN KISLDYVLFNRNPGMVDPYTKLHYDNMLYAQVDAVVCAMFRMGYGGIEVRVSETGWPS KGDSDEIGATVQNAAVYNRNLLRRQMSNEGTPLRPNMRLEVYLFALFNEDMKPGPTSE RNYGLFQPDGTIAYNVGLSALATTSSTSSASISLTSSATKAANMEYQSLVYWMFVYLL TFHVFMRRLH" gene 22827383..22828716 /locus_tag="TCM_029479" /note="dbxref CacaoGD:Thecc1EG029479" mRNA join(22827383..22827490,22827580..22827767, 22827866..22828028,22828235..22828716) /locus_tag="TCM_029479" /product="Cytomegalovirus, putative" /inference="alignment:exonerate- protein:2:ricco:29693.m002006" /inference="similar to AA sequence:ricco:29693.m002006" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc930t1" CDS join(22827413..22827490,22827580..22827767, 22827866..22828028,22828235..22828468) /locus_tag="TCM_029479" /note="dbxref ricco:29693.m002006" /codon_start=1 /product="Cytomegalovirus, putative" /protein_id="EOY27692.1" /db_xref="TAIR:AT2G34580.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H408" /translation="MALSSAFRERLETMEHSRNQRLALLQAEKELQANKSQVLESKLA HIRSREQRRLLLDQKIASQNFKISSLQSGIENLDAKYNSSSEQLKVLKSEIEELEEVE KEKDKFYESKSSEINEFRENVGRFLMESRIRVQELRNSVNEMKSTFMELQGNNGYTSN YEIDEAEMKKAELLAMKENLTKSLASNYQIRAELQKQVENMLAAQNQERWKQDNRFMK FA" gene complement(22828722..22834530) /locus_tag="TCM_029480" /note="dbxref CacaoGD:Thecc1EG029480" mRNA complement(join(22828722..22829085,22829442..22829540, 22829843..22829926,22830164..22830341,22830457..22830600, 22830660..22830736,22830889..22830945,22831071..22831169, 22831278..22831400,22831502..22831624,22831734..22831847, 22832060..22832248,22832400..22832566,22832653..22832657, 22833343..22833539,22833647..22833736,22833850..22834035, 22834164..22834530)) /locus_tag="TCM_029480" /product="Beta-Amyrin Synthase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s08330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027681t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s08330.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc3480t1" CDS complement(join(22828963..22829085,22829442..22829540, 22829843..22829926,22830164..22830341,22830457..22830600, 22830660..22830736,22830889..22830945,22831071..22831169, 22831278..22831400,22831502..22831624,22831734..22831847, 22832060..22832248,22832400..22832566,22832653..22832657, 22833343..22833539,22833647..22833736,22833850..22834035, 22834164..22834361)) /locus_tag="TCM_029480" /note="paralog of Thecc1EG027681t1" /codon_start=1 /product="Beta-Amyrin Synthase, putative" /protein_id="EOY27693.1" /db_xref="Phytozome:POPTR_0011s08330.1" /db_xref="TAIR:AT1G78950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82140" /translation="MWKLEIAEGVGPWLFTTNKFMGRQVWKFDAASWTSEERALIENF RQNFSLHRHHVKASSDMLKNFQLIQDNQVDLSIAPVRLEDNEEVTREKVTTALRKAVR FTSATQAWDGHWLSENSGPLFSLRPLVMVLYLTGTLDTVLSSEHKREVLRYIYNHQNR DGGWGFHVEGHSTMLTMILNYIALRLLGEGTEGGKDGAVEKARNWIVNHGGATMIPSL GKAYLCPARLWSFMRNFYAPMSYLYGKKFVGPITELILSLREEIYIQPYEKIDWNKAR HSCLKEDVYHPYPMVQILLWDSLYYIAEPVLKCWPFSNLREKALQIATKLIHYEDENT RYITQGSIQNVLHMMACWAEDPTSDSIKFHLARVPDYLWVAEDGMKMQLNGGSQLWDT VLTTQAIISSNLTDEYGSTLRKAHEFIKQCQLQENASGDFQSMHRHMSKGAWTFSVQD DGWQTIDGIAEALKAILLLSKLPPEIVGETVEVERLYDAVNVLLSLQSKNGGFTAWEP VRGPQWLEKLNPTELFAAAAIEREHVPIISNCIMYAECTSSAIQALVLFSQLYPGYRK KDIETCVTNAVQFLEGSQMEDGSWYGSWGVCYTYGTCFALAGLTAVGKTCHSSQIVRK ACQFLLSKQQESGGWGESYLTCPNLEYEHLAEGDCSNLVQTSWAMMGLIHAGQAELDP QPLHKAARLLINSQMESGKFPQQVCKTYELTGVCLRTCMIHYAAYRNIFPLWALGEYC KHVLSTSQEY" mobile_element 22834672..22836103 /note="source:scaffold_10_CACTA_0130 7926 9341" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22836075..22836132) /note="source:scaffold_8_CACTA_0867 417 474" /mobile_element_type="transposon:TIR/CACTA" gene 22836601..22838758 /locus_tag="TCM_029481" /note="dbxref CacaoGD:Thecc1EG029481" mRNA join(22836601..22836861,22837232..22837384, 22837678..22837917,22838007..22838066,22838173..22838709) /locus_tag="TCM_029481" /product="SGS domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s08350.1" /inference="similar to AA sequence:ricco:29693.m002009" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6127t2; inference alignment:Newbler:10:TSA:cgbaP1_g07180t00001" mRNA join(22836703..22836861,22837226..22837384, 22837678..22837917,22838007..22838066,22838173..22838758) /locus_tag="TCM_029481" /product="SGS domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s08350.1" /inference="similar to AA sequence:ricco:29693.m002009" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07180t00001" mRNA join(22836705..22836861,22837226..22837384, 22837678..22838066,22838173..22838262) /locus_tag="TCM_029481" /product="SGS domain-containing protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s08350.1" /inference="similar to AA sequence:ricco:29693.m002009" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc396t4; inference alignment:Newbler:10:TSA:cgbaP1_g07180t00001" CDS join(22836751..22836861,22837226..22837384, 22837678..22837917,22838007..22838066,22838173..22838277) /locus_tag="TCM_029481" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29693.m002009" /codon_start=1 /product="SGS domain-containing protein isoform 1" /protein_id="EOY27694.1" /db_xref="TAIR:AT1G30070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I4Q9" /translation="MAEELALDLEELRQLQSIAKRPRILSLLSSEIRNLEKLQTSNEV AKAPTPATVSQIPTPISTSGKVPVNPALSYVTLASFSWDQDNDKVKIYVSLEGVNQEK IQTEFKPMSFDVKFHDVQGKNYRCAIPKLNKDIVPEKCKVLVKPTRVVITLFKASKGN WSDLHYKEDKLKPNLDKERDPMAGIMDLMKNMYEDGDDDMKRTIAKAWTDARSGKTAD PLKGYR" CDS join(22836751..22836861,22837232..22837384, 22837678..22837917,22838007..22838066,22838173..22838277) /locus_tag="TCM_029481" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29693.m002009" /codon_start=1 /product="SGS domain-containing protein isoform 2" /protein_id="EOY27695.1" /db_xref="TAIR:AT1G30070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I4Q9" /translation="MAEELALDLEELRQLQSIAKRPRILSLLSSEIRNLEKTSNEVAK APTPATVSQIPTPISTSGKVPVNPALSYVTLASFSWDQDNDKVKIYVSLEGVNQEKIQ TEFKPMSFDVKFHDVQGKNYRCAIPKLNKDIVPEKCKVLVKPTRVVITLFKASKGNWS DLHYKEDKLKPNLDKERDPMAGIMDLMKNMYEDGDDDMKRTIAKAWTDARSGKTADPL KGYR" CDS join(22836751..22836861,22837226..22837384, 22837678..22837941) /locus_tag="TCM_029481" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29693.m002009" /codon_start=1 /product="SGS domain-containing protein isoform 3" /protein_id="EOY27696.1" /db_xref="TAIR:AT1G30070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I4Q9" /translation="MAEELALDLEELRQLQSIAKRPRILSLLSSEIRNLEKLQTSNEV AKAPTPATVSQIPTPISTSGKVPVNPALSYVTLASFSWDQDNDKVKIYVSLEGVNQEK IQTEFKPMSFDVKFHDVQGKNYRCAIPKLNKDIVPEKCKVLVKPTRVVITLFKASKGN WSDLHYKEDKVIANNIG" gene complement(22838826..22848064) /locus_tag="TCM_029482" /note="dbxref CacaoGD:Thecc1EG029482" mRNA complement(join(22838826..22839290,22839464..22839686, 22840048..22840149,22840668..22840831,22841062..22841146, 22841421..22841487,22842269..22842376,22842521..22842586, 22842815..22842870,22842978..22843154,22843546..22844052, 22847488..22848064)) /locus_tag="TCM_029482" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29693.m002010" /inference="similar to AA sequence:ricco:29693.m002010" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:PASA:2:TSA:puevd3b028504t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g06491t00001" mRNA complement(join(22838864..22839290,22839464..22839686, 22840048..22840149,22840668..22840831,22841062..22841146, 22841421..22841487,22842269..22842376,22842521..22842586, 22842815..22842870,22842978..22843127,22843546..22843750)) /locus_tag="TCM_029482" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29693.m002010" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028585t2" /inference="similar to AA sequence:ricco:29693.m002010" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6106t2; inference alignment:Newbler:10:TSA:cgbaP2_g06491t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc652t9_C2" mRNA complement(join(22838943..22839290,22839464..22839695, 22840048..22840197,22840668..22840831,22841062..22841146, 22841421..22841487,22842269..22842376,22842521..22842586, 22842815..22842870,22842978..22843154,22843546..22843750, 22847391..22847447)) /locus_tag="TCM_029482" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29693.m002010" /inference="similar to AA sequence:ricco:29693.m002010" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06491t00001" CDS complement(join(22839157..22839290,22839464..22839686, 22840048..22840149,22840668..22840831,22841062..22841146, 22841421..22841487,22842269..22842376,22842521..22842586, 22842815..22842870,22842978..22843127,22843546..22843584)) /locus_tag="TCM_029482" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29693.m002010; paralog of Thecc1EG028585t2" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /protein_id="EOY27699.1" /db_xref="TAIR:AT2G34560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DGC0" /translation="MADEPSVTRWSFLFGRKRLPEPQDGQAADTPVSNGISSNVTSNG NHSVKNTSDMAIYEQYRNRDTNSVNSNGAVANGFDSRPQKSLLPDFETAEMRALGESL SRDIVRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGT GKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFDLARHHAPSTIFLDEID AIISQRGGEGRSEHEASRRLKTELLIQMDGLTRSDELVFVLAATNLPWELDAAMLRRL EKRILVPLPEPEARRAMFEELLPEQHGEETLPYDILVEKSEGYSGSDIRLLCKEAAMQ PLRRLMTVLEDRHELVPDDELPKVGPITPDDIETALKNTRPSAHLHAHRYEKFNTDYG SQILQ" CDS complement(join(22839157..22839290,22839464..22839686, 22840048..22840149,22840668..22840831,22841062..22841146, 22841421..22841487,22842269..22842376,22842521..22842586, 22842815..22842870,22842978..22843154,22843546..22843584)) /locus_tag="TCM_029482" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29693.m002010" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY27698.1" /db_xref="TAIR:AT2G34560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DGC0" /translation="MADEPSVTRWSFLDFKMFYDAKFGRKRLPEPQDGQAADTPVSNG ISSNVTSNGNHSVKNTSDMAIYEQYRNRDTNSVNSNGAVANGFDSRPQKSLLPDFETA EMRALGESLSRDIVRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKG ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFDLARHHAP STIFLDEIDAIISQRGGEGRSEHEASRRLKTELLIQMDGLTRSDELVFVLAATNLPWE LDAAMLRRLEKRILVPLPEPEARRAMFEELLPEQHGEETLPYDILVEKSEGYSGSDIR LLCKEAAMQPLRRLMTVLEDRHELVPDDELPKVGPITPDDIETALKNTRPSAHLHAHR YEKFNTDYGSQILQ" CDS complement(join(22839157..22839290,22839464..22839695, 22840048..22840197,22840668..22840831,22841062..22841146, 22841421..22841487,22842269..22842376,22842521..22842586, 22842815..22842870,22842978..22843154,22843546..22843584)) /locus_tag="TCM_029482" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29693.m002010" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY27697.1" /db_xref="TAIR:AT2G34560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DGC0" /translation="MADEPSVTRWSFLDFKMFYDAKFGRKRLPEPQDGQAADTPVSNG ISSNVTSNGNHSVKNTSDMAIYEQYRNRDTNSVNSNGAVANGFDSRPQKSLLPDFETA EMRALGESLSRDIVRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKG ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFDLARHHAP STIFLDEIDAIISQRGGEGRSEHEASRRLKTELLIQLSTILSQKLIIRIRLQMDGLTR SDELVFVLAATNLPWELDAAMLRRLEKRLKKILVPLPEPEARRAMFEELLPEQHGEET LPYDILVEKSEGYSGSDIRLLCKEAAMQPLRRLMTVLEDRHELVPDDELPKVGPITPD DIETALKNTRPSAHLHAHRYEKFNTDYGSQILQ" mobile_element 22844425..22845470 /note="source:CACAO_on_E206_scaffold_2 2 1090" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22845762..22846117) /note="source:CACAO_on_SS_E42_scaffold_2 24149 24533" /mobile_element_type="transposon:TIR/Mutator" mobile_element 22845825..22846175 /note="source:CACAO_Again_on_S_E235_scaffold_7 101 412" /mobile_element_type="transposon:TIR/hAT" mobile_element 22846173..22846310 /note="source:CACAO_Again_on_S_E195_scaffold_6 892 1029" /mobile_element_type="transposon:TIR/hAT" mobile_element 22846311..22846337 /note="source:scaffold_3_CACTA_0398 4274 4417" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22846351..22846425 /note="source:scaffold_4_CACTA_0511 7271 7351" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22846452..22846539) /note="source:CACAO_Again_on_E207_scaffold_9 320 407" /mobile_element_type="transposon:TIR/hAT" gene complement(22852195..22854247) /locus_tag="TCM_029483" /note="dbxref CacaoGD:Thecc1EG029483" mRNA complement(join(22852195..22852824,22853227..22853575, 22853757..22854247)) /locus_tag="TCM_029483" /product="Gibberellin 2-beta-dioxygenase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s06380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032327t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s06380.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08145t00001" CDS complement(join(22852573..22852824,22853227..22853575, 22853757..22854157)) /locus_tag="TCM_029483" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG032327t1" /codon_start=1 /product="Gibberellin 2-beta-dioxygenase isoform 1" /protein_id="EOY27700.1" /db_xref="Phytozome:POPTR_0004s06380.1" /db_xref="TAIR:AT1G30040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XG83" /translation="MVVLSQPALDHYTSIKTCKPTSVFTGLPVINLRDPEAKTLMVKA CEEYGFFKLVNHGVPMEFMIRLETEALRFFNLPQSVKDKAGPPEPFGYGSKRIGPNGD VGWIEYLLLNTNPQVTSLKTLTIFRQNPEIFRSAVNDYILAVKRMAFEVLDLMAEGLK IEPRNALSRLLRDEKSDSCFRLNYYPPCPELQALSGRNLIGFGEHTDPQIISVLRSNN TSGLQICLRDGTWVSVPPDQTSFFINIGDALQVMTNGRLKSVRHRVLAESLKSRVSMI YFGGPPLSEKIAPLPSLVAKGEESLYKEFTWWEYKTSAYKSRLADYRLGLFEKNAGH" mRNA complement(join(22853082..22853578,22853757..22854247)) /locus_tag="TCM_029483" /product="Gibberellin 2-beta-dioxygenase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s06380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032327t1" /inference="similar to AA sequence:ricco:29693.m002012" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b028505t1a2; inference alignment:Newbler:10:TSA:cgbaB_g08145t00001" CDS complement(join(22853200..22853578,22853757..22854157)) /locus_tag="TCM_029483" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29693.m002012; paralog of Thecc1EG032327t1" /codon_start=1 /product="Gibberellin 2-beta-dioxygenase isoform 2" /protein_id="EOY27701.1" /db_xref="TAIR:AT1G30040.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XG83" /translation="MVVLSQPALDHYTSIKTCKPTSVFTGLPVINLRDPEAKTLMVKA CEEYGFFKLVNHGVPMEFMIRLETEALRFFNLPQSVKDKAGPPEPFGYGSKRIGPNGD VGWIEYLLLNTNPQVTSLKTLTIFRQNPEIFRSSAVNDYILAVKRMAFEVLDLMAEGL KIEPRNALSRLLRDEKSDSCFRLNYYPPCPELQALSGRNLIGFGEHTDPQIISVLRSN NTSGLQICLRDGTWVSVPPDQTSFFINIGDALQVYIMSTVF" mobile_element 22856558..22856719 /note="source:CACAO_Mutator_E592_scaffold_3 3612 3770" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(22859466..22860153) /note="source:CACAO_on_E373_scaffold_1 2 728" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 22864148..22868304 /note="source:INTACT271_F62_scaffold_5-int 3 4177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22868301..22869066 /note="source:INTACT710_F62_scaffold_3-int 6399 7177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22872260..22872355 /note="source:scaffold_4_CACTA_0483 2566 2663" /mobile_element_type="transposon:TIR/CACTA" gene complement(22873315..22879584) /locus_tag="TCM_029485" /note="dbxref CacaoGD:Thecc1EG029485" mRNA complement(join(22873315..22873676,22874091..22874161, 22874671..22874805,22875508..22876152,22879537..22879584)) /locus_tag="TCM_029485" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s06370.1" /inference="similar to AA sequence:ricco:29693.m002013" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b028507t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc545t1" mRNA complement(join(22873315..22873676,22874091..22874177, 22874671..22874805,22875508..22876152,22879537..22879584)) /locus_tag="TCM_029485" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s06370.1" /inference="similar to AA sequence:ricco:29693.m002013" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc545t1" CDS complement(join(22873581..22873676,22874091..22874177, 22874671..22874805,22875508..22876056)) /locus_tag="TCM_029485" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29693.m002013" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27702.1" /db_xref="TAIR:AT2G34540.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S117" /translation="MEAALCLGYGPLPSISLRMPSSTNVTSPASTKLYFGYNHSSMSV SSGFTNRRKCHHFYSTSGPLALDRSNNSMPSAKEDGGKVVRGAVGASLALACALSIIG CSCKMNLKAIAGPKQQVYRKAPSFQQLTPQPPKKMALKSLLDVTVILTSKDETRVKEG ITLTPSPTLRQPFLSKQQIEELKLAAVGLMKRGKPDQALQMLKNEHKRLDGESAYEMS MVLAEILISQGKYLEALNFLPADHDQHVSEFDVRPILYKAIVYTMLDKDDDAQQLWNE FAKSSEFSPFGS" CDS complement(join(22874156..22874161,22874671..22874805, 22875508..22876056)) /locus_tag="TCM_029485" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29693.m002013" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY27703.1" /translation="MEAALCLGYGPLPSISLRMPSSTNVTSPASTKLYFGYNHSSMSV SSGFTNRRKCHHFYSTSGPLALDRSNNSMPSAKEDGGKVVRGAVGASLALACALSIIG CSCKMNLKAIAGPKQQVYRKAPSFQQLTPQPPKKMALKSLLDVTVILTSKDETRVKEG ITLTPSPTLRQPFLSKQQIEELKLAAVGLMKRGKPDQALQMLKNEHKRLDGESAYEMS MVLAEILISQP" gene 22877362..22879455 /locus_tag="TCM_029486" /note="dbxref CacaoGD:Thecc1EG029486" mRNA join(22877362..22877680,22878776..22879455) /locus_tag="TCM_029486" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.35 coverage" CDS 22878835..22879140 /locus_tag="TCM_029486" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27704.1" /translation="MRGAKEFIRTTKNIVLLLEMIVRRVHFHPSWSGRMGQRLSAKQR LPSLLSVVFLGVSSRFVLSPLMHPVIGKGRAETVDSHGTTIPLKFFFATPFHFLKAF" gene 22879788..22881872 /locus_tag="TCM_029487" /note="dbxref CacaoGD:Thecc1EG029487" mRNA join(22879788..22880240,22880488..22880634, 22881071..22881157,22881389..22881872) /locus_tag="TCM_029487" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021458001" /inference="similar to AA sequence:Phytozome:POPTR_0004s06360.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6057t1" CDS join(22879932..22880240,22880488..22880634, 22881071..22881157,22881389..22881574) /locus_tag="TCM_029487" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27705.1" /db_xref="Phytozome:POPTR_0004s06360.1" /db_xref="TAIR:AT2G34530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ANI8" /translation="MANSAKKINKESTYRTIAVAATPIIILGGICIGFGWRYVRRAWK SKQNHVRSVSLAALQGGKLALDRLVDYQKYRGKATETDVDIKELETQLGKEHSNFKEL QRVLARLEMSRREDEAIKVLKNALKKAKRERKSHEAYEIEMLLAEMFIYKGDFENASK CKCLAAGEEEKVSDPRIPLYKAIINLINQKEQDALQHWEKFRDEMQGLANAPSFQEEE FLVFKNAVLHLKEDINAARQLKKL" gene 22883946..22887614 /locus_tag="TCM_029488" /note="dbxref CacaoGD:Thecc1EG029488" mRNA join(22883946..22884291,22884397..22884600, 22884903..22885463,22886593..22887614) /locus_tag="TCM_029488" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29693.m002014" /inference="similar to AA sequence:Phytozome:POPTR_0018s11720.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc3123t2" CDS join(22884039..22884291,22884397..22884600, 22884903..22885463,22886593..22886942) /locus_tag="TCM_029488" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27706.1" /db_xref="Phytozome:POPTR_0018s11720.1" /db_xref="TAIR:AT5G46220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6DBD7" /translation="MGKVTATTTPLFFQSKLLCISLLYLFTTLLLAIYHSLSSTKCLF RSSPFDPIQTPFFSYPHSYGEHKYAIPTDRSFCSSPVFFSDYGVVVDEIKDLCKNSSA FWPVLSYVQGKGDSFGGNLSTQKRITYFNHSNNGVKVPCGFLKKFPVSASDRIAMENC NGVVVVSAIFNDHDKIRQPVGLGSKTLESVCFFMLIDDITLKGLYNHKLIPQNSPDYK VGVWRIVKVSSKKLYENPAMNGVIPKYLVHRLFPNSKFSIWIDAKLQLMVDPLLLIHS LVVSTNADMAISKHPYYIHTMEEAMATARWKKWSDVDALTRQMETYCENGLQPWTPNK LPYTTDVPDSALILRKHGLGSNLFSCLLFNELEAFNPRDQLAFAYVRDQMNPKLKLNM FEVEVFEHIVVEYRHNLKKIGDESAGSGTRPKAKRTKRTSHDFDLNGSSCQKYLLEMW GESHS" mobile_element 22887885..22888084 /note="source:CACAO_on_E202_scaffold_1 1 203" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22887913..22888120) /note="source:CACAO_Again_on_S_E221_scaffold_7 552 758" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22888031..22888676) /note="source:scaffold_5_CACTA_0614 1444 2038" /mobile_element_type="transposon:TIR/CACTA" gene 22889216..22889813 /locus_tag="TCM_029489" /note="dbxref CacaoGD:Thecc1EG029489" mRNA 22889216..22889813 /locus_tag="TCM_029489" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s06350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026789t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s06350.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g11162t00001" CDS 22889236..22889676 /locus_tag="TCM_029489" /note="paralog of Thecc1EG026789t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27707.1" /db_xref="Phytozome:POPTR_0004s06350.1" /db_xref="TAIR:AT5G46230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2D3U0" /translation="MALQQIATNREAAEIYQGAALCKQKSMELLGEFHLPKGLMPLDN LVEVGYNRTTGFVWLKQQKSLEYRFKAIGKTVSYEPEMTAFVEDRRMRRLTGVKSKEL LIWVSVSDIFIDKSNPSKITFANSTGLSRSFPVAAFEAEGEGRN" gene 22892912..22893557 /locus_tag="TCM_029490" /note="dbxref CacaoGD:Thecc1EG029490" mRNA 22892912..22893557 /locus_tag="TCM_029490" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene30599" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029489t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021449001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2158t1_C2" CDS 22892939..22893403 /locus_tag="TCM_029490" /note="paralog of Thecc1EG029489t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27708.1" /db_xref="Phytozome:GSVIVT01021449001" /db_xref="TAIR:AT5G46230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PCV4" /translation="MASSKVTESHRENAEIYYGEDICKQKCLELLEEISLPKGIIPVE IVEFGRDRSTGFVWMKLKSKKEHKFKRINKVVSYDTEITFFAENGRVKKLTGIKSKEL LFWVSISDMFIEDPSSGKIFFAVRSGVRAHFPISAFELEEDKKNSTDSKHTT" gene complement(22894040..22896189) /locus_tag="TCM_029491" /note="dbxref CacaoGD:Thecc1EG029491" mRNA complement(join(22894040..22894079,22895615..22896189)) /locus_tag="TCM_029491" /product="Nuclear receptor coactivator 6, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s13930.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(22895673..22896056) /locus_tag="TCM_029491" /codon_start=1 /product="Nuclear receptor coactivator 6, putative" /protein_id="EOY27709.1" /translation="MMGFNQTLKHFFALLLILFIFLIVSFACPASCNEMLPKNTPSNQ PAPAYQVLDIKNTTPFFLNKQEFDKKRKRKMSRRKTSKKHFKARPFSVMLPKGSVPPS GSSPCHNDKPDSSVVLFCGLSAAKP" gene 22897292..22903323 /locus_tag="TCM_029492" /note="dbxref CacaoGD:Thecc1EG029492" mRNA join(22897292..22897540,22898344..22899305, 22900301..22900562,22901759..22901956,22902134..22903323) /locus_tag="TCM_029492" /product="Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s13920.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s13920.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:PASA:2:TSA:puevd3b028514t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6102t2" mRNA join(22897292..22897540,22898344..22899305, 22900301..22900562,22901759..22901956,22902134..22902282, 22902405..22903323) /locus_tag="TCM_029492" /product="Alpha-mannosidase 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s13920.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s13920.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6102t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6102t2" CDS join(22897463..22897540,22898344..22899305, 22900301..22900562,22901759..22901956,22902134..22902282, 22902405..22902654) /locus_tag="TCM_029492" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Alpha-mannosidase 3 isoform 1" /protein_id="EOY27710.1" /db_xref="Phytozome:POPTR_0004s13920.1" /db_xref="TAIR:AT1G30000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Y37" /translation="MSKSLPYSMKDVHYDNAKFRHRSFFKVITQNLLTSNMKRECVSC STGKFLGLLMIFGLAYLMLTHENSRDSVSDGLGKGIRTNEEHKVVTDVGIRFKKLFRR APRLPPRLSPDEKVSYSNFTGKPIKPNVEAKWNARQQNVKEAFTHAWSGYKKFAMGYD ELMPVSQHGVDGLGGLGATVVDALDTAMIMGLDEVVSEAGSWIESHLLERISQKGQVN LFETTIRVLGGLLSAYHLSGVDQGVNSAHKGPKPTIYLDIAKHLANRLLSAFTSSPTA IPFSDVMLHDSSAHPAPDGLSSTSEVSSLQLEFNYLSAISGDPKYSTEAMKVLAHFKT LPKVEGLVPIYISPHSGEFSGENIRLGSRGDSYYEYLIKVWLQLRAIQDGNFTYLYDM YEEAMRGVRHLLVQKSIPNELVFVGELPYGSKGSFSPKMDHLVCFLPGTLALGATKGI TKEKAMKDNLLTFEDLQNLKLAEDLAKTCFEMYSVTSTGLAPEIAYFHTEEYFEDGLD GGNKSSEYVNDIIIKRADRHNLLRPETVESLFVLYRITQDQKYREWGWQIFESFEKYT KVDSGGYTSLDDVTTLPPQRRDKMETFFLGETLKYLYLLFGDSSVMPLDKYVFNTEAH PFPIKDAI" CDS join(22897463..22897540,22898344..22899305, 22900301..22900562,22901759..22901956,22902134..22902304) /locus_tag="TCM_029492" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase isoform 2" /protein_id="EOY27711.1" /db_xref="Phytozome:POPTR_0004s13920.1" /db_xref="TAIR:AT1G30000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Y37" /translation="MSKSLPYSMKDVHYDNAKFRHRSFFKVITQNLLTSNMKRECVSC STGKFLGLLMIFGLAYLMLTHENSRDSVSDGLGKGIRTNEEHKVVTDVGIRFKKLFRR APRLPPRLSPDEKVSYSNFTGKPIKPNVEAKWNARQQNVKEAFTHAWSGYKKFAMGYD ELMPVSQHGVDGLGGLGATVVDALDTAMIMGLDEVVSEAGSWIESHLLERISQKGQVN LFETTIRVLGGLLSAYHLSGVDQGVNSAHKGPKPTIYLDIAKHLANRLLSAFTSSPTA IPFSDVMLHDSSAHPAPDGLSSTSEVSSLQLEFNYLSAISGDPKYSTEAMKVLAHFKT LPKVEGLVPIYISPHSGEFSGENIRLGSRGDSYYEYLIKVWLQLRAIQDGNFTYLYDM YEEAMRGVRHLLVQKSIPNELVFVGELPYGSKGSFSPKMDHLVCFLPGTLALGATKGI TKEKAMKDNLLTFEDLQNLKLAEDLAKTCFEMYSVTSTGLAPEIAYFHTEEYFEDGLD GGNKSSEYVNDIIIKRADRHNLLRPETVESLFVLYRITQDQKYTLVAL" gene complement(22902905..22920674) /locus_tag="TCM_029493" /note="dbxref CacaoGD:Thecc1EG029493" mRNA complement(join(22902905..22903294,22903524..22904193, 22904275..22904460,22904554..22904586,22904682..22904780, 22904993..22905232,22905660..22905977,22906078..22906135, 22906237..22906392,22906508..22906723,22906805..22907025, 22907181..22907241,22907436..22908065,22920587..22920674)) /locus_tag="TCM_029493" /product="Potassium channel in 2" /inference="alignment:exonerate- protein:2:ricco:29693.m002020" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037994t1" /inference="similar to AA sequence:ricco:29693.m002020" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc306t17" CDS complement(join(22903149..22903294,22903524..22904193, 22904275..22904460,22904554..22904586,22904682..22904780, 22904993..22905232,22905660..22905977,22906078..22906135, 22906237..22906392,22906508..22906723,22906805..22907025, 22907181..22907241,22907436..22907518)) /locus_tag="TCM_029493" /note="dbxref ricco:29693.m002020; paralog of Thecc1EG037994t1" /codon_start=1 /product="Potassium channel in 2" /protein_id="EOY27712.1" /db_xref="TAIR:AT5G46240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38849" /translation="MMELPQPPAAAFHQQKHHYCCHYLHSFNPNEMENLTQPSPTFTS TLSDPLLLGVPLRIQTTKMSLSCTKNFFQRFCIDEFQMGSDIHGSFFSSDLLPSLGAR INQATKLRKYIISPFNPHYRAWEMWLVVLVIYSAWICPFEFAFLTYKKDALFIVDNIV NGFFAIDIILTFFVAYLDSQSYLLVDDPKKIAIRYISTWFAFDVCSTVPFQYLSILLT DNGSELWLRLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGC FNYLIADRYPDPSKTWIGAVYPNFKNYSLWDRYVTSIYWSITTLTTTGYGDLHAENPR EMLFDIFYMLFNLGLTAYLIGNMTNLVVHWTSRTRNFRDTVRAASEFVTRNQLPTNIQ DQMLSHICLRFRTEGLKQQETLNSLPKAIRSSIAQHLFFHIVQKVYLFQGVSHDFLFQ LVSEMEAEYFPPREDVILQNEAPTDLYILVSGAVNLLSHADGHNRVIGKVAAGDMFGE IGVLCYRPQPYTVRTTELCQILRLNGTSLMNTVQVNMEDGRVIMHNLFMNLNALESSS FDQPNLDPGLIHDERLGGGAMGVSCLSAGFKDQPERYASKKEAIDMDILGSEAIEESQ TGRSPMCRISTTEDGQTAVNDAVRKGHIEMVKILLEGGASVNKPDARGWTPKALAEQQ GNKSIHELLLSYENRRKLDEHRIEVIGPETADDTKNSQSKYRSRAQNFFSLPSYREVI TPTKTRVTIHMQFQSSSTSSTQLGKLILLPDSIQGLLRMAGEKFGGYTFTKVINAENA EIDDINVIRDGDNLFLLQDEDENVDFNVTR" mobile_element 22911656..22913649 /note="source:INTACT115_F39_scaffold_4-int 1 1971" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22913648..22914159 /note="source:CACAO_M_E49539_F76_scaffold_7 3109 3620" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22914588..22915596 /note="source:CACAO_M_E49539_F76_scaffold_7 4028 5062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22914670..22915759) /note="source:scaffold_2_CACTA_0252 1237 2388" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22915688..22916924 /note="source:CACAO_M_E49539_F76_scaffold_7 5050 6190" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22915785..22917670) /locus_tag="TCM_029495" /note="dbxref CacaoGD:Thecc1EG029495" mRNA complement(join(22915785..22916094,22916701..22916771, 22917026..22917528,22917613..22917670)) /locus_tag="TCM_029495" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019338t1" /inference="similar to AA sequence:Phytozome:Glyma07g34840.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS complement(join(22916079..22916094,22916701..22916771, 22917026..22917528,22917613..22917637)) /locus_tag="TCM_029495" /note="paralog of Thecc1EG019338t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27713.1" /db_xref="Phytozome:Glyma07g34840.1" /translation="MSVESLNGIFKKFKASVELESGCKVKCLRIDNGGEFNSDEFEAF LSIVGIKHQFTVPYSLQQNGVCERKNRTILNMARRLLFEKSMPKEFWAKAANTVVYLQ NILPTKALEKLTPYEAWYNVKPTVNHLKVFGCICYVHVPKAKRTKLKPKAELRVFLGY SLQSKGYKVFNLSSKKDSGTCPRVPREGNGACPLQNPRIGVQRA" mobile_element 22916925..22919627 /note="source:INTACT115_F39_scaffold_4-int 1966 4674" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22920658..22920672 /note="source:MITE_hAT_12 977 1081" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(22920673..22920775) /note="source:CACAO_on_E206_scaffold_2 4 109" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22922890..22923872) /note="source:CACAO_on_S_E46_scaffold_2 522 1434" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(22926518..22926658) /note="source:CACAO_on_E545_scaffold_5 160 303" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 22928055..22928179 /note="source:CACAO_on_E52_scaffold_7 3964 4086" /mobile_element_type="transposon:TIR/hAT" gene complement(22930655..22933825) /locus_tag="TCM_029496" /note="dbxref CacaoGD:Thecc1EG029496" mRNA complement(join(22930655..22930764,22931796..22931856, 22932444..22932568,22932677..22932747,22932854..22933120, 22933497..22933587,22933710..22933825)) /locus_tag="TCM_029496" /product="Prefoldin 6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021444001" /inference="similar to AA sequence:Phytozome:POPTR_0004s13700.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc365t4; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc365t4" mRNA complement(join(22930655..22930764,22931796..22931856, 22932462..22932568,22932677..22932747,22932854..22933140, 22933497..22933587,22933710..22933825)) /locus_tag="TCM_029496" /product="Prefoldin 6 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021444001" /inference="similar to AA sequence:Phytozome:POPTR_0004s13700.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc365t6; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc365t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc362t9" CDS complement(join(22930708..22930764,22931796..22931856, 22932462..22932568,22932677..22932747,22932854..22932935)) /locus_tag="TCM_029496" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Prefoldin 6 isoform 2" /protein_id="EOY27715.1" /db_xref="Phytozome:POPTR_0004s13700.1" /db_xref="TAIR:AT1G29990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2HIK4" /translation="MSSSSTALRELQRDLENKANDLSKLQKDIAKNHQVKKKYTIQLG ENELVLKELDLLNEDANVYKLIGPVLVKQDLAEANANVRKRIEKRLDASLQDLEEKQY SKREAILKVQQRIQSHQAGKAKA" CDS complement(join(22930708..22930764,22931796..22931856, 22932444..22932568,22932677..22932747,22932854..22932935)) /locus_tag="TCM_029496" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Prefoldin 6 isoform 1" /protein_id="EOY27714.1" /db_xref="Phytozome:POPTR_0004s13700.1" /db_xref="TAIR:AT1G29990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2HIK4" /translation="MSSSSTALRELQRDLENKANDLSKLQKDIAKNHQVKKKYTIQLG ENELVLKELDLLNEDANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDASLQD LEEKQYSKREAILKVQQRIQSHQAGKAKA" mobile_element 22935343..22935726 /note="source:scaffold_1_CACTA_0008 14033 14410" /mobile_element_type="transposon:TIR/CACTA" gene 22935842..22941936 /locus_tag="TCM_029497" /note="dbxref CacaoGD:Thecc1EG029497" mRNA join(22935842..22936185,22936467..22936640, 22939403..22939903,22940739..22941936) /locus_tag="TCM_029497" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29693.m002017.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038370t2" /inference="similar to AA sequence:ricco:29693.m002017" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06661t00001" CDS join(22936044..22936185,22936467..22936640, 22939403..22939903,22940739..22941331) /locus_tag="TCM_029497" /note="dbxref ricco:29693.m002017; paralog of Thecc1EG038370t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27716.1" /db_xref="TAIR:AT1G29980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I378" /translation="MLSDIYIMQKQKKKEIWIGLNIMSIYGGRLGPPRDHTSQNTELN FITEYAKGGAVPKRETEAFTKEEKEEGYLAKKMAESSASSKWVFLFMLIFAHLATLSL AEDGLVANGDFETAPSNGFPSEAISDGPTEIPSWKTKGIVELVSSGEKVGGGMLLIVP RGRHAARLGNDAEISQELSVEKGSTYAVTFSAARTCAQLESLNVSVPPASQTVDLQTL YNVQGWDPYSISFEAEDDRARLIFRNPGMEDDPECGPIIDDIAIKKLVAPDKPKDNAV VNSGFEFGPWMFPNVSLGVLLPTNLDEETSPLPGWMVESNRAVRYIDSNHYAVPEGKR AVELVSGKEGIISQMVETTPDKLYSLTFSLGHARDKCKEPLAVMAFAGDQAQNFHYTP DSNSTFQVASVNFTAKAERTRIAFYSVYYNTRTDDMSSLCGPVVDDVRVWFSGSRRNE VGVLLGLGLAFWAFLLLLV" gene 22941984..22948926 /locus_tag="TCM_029499" /note="dbxref CacaoGD:Thecc1EG029499" mRNA join(22941984..22942089,22943529..22944081, 22944256..22944337,22946079..22946173,22946313..22946384, 22946465..22946544,22946656..22946740,22947573..22947620, 22947711..22947986,22948183..22948276,22948357..22948926) /locus_tag="TCM_029499" /product="Translation initiation factor eIF-2B subunit delta, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02640.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s02640.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b028520t1a2; inference alignment:Newbler:10:TSA:cgbaL_g10611t00001" mRNA join(22941984..22942089,22943529..22944081, 22944256..22944337,22946079..22946173,22946313..22946384, 22946465..22946544,22946656..22946740,22947573..22947620, 22947711..22947776,22947849..22948276,22948357..22948926) /locus_tag="TCM_029499" /product="Translation initiation factor eIF-2B subunit delta, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02640.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s02640.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b028520t1a3; inference alignment:Newbler:10:TSA:cgbaL_g10611t00001" mRNA join(22941984..22942089,22943529..22944081, 22944256..22944337,22946079..22946173,22946313..22946384, 22946465..22946544,22946656..22946740,22947573..22947620, 22947711..22947776,22947849..22947986,22948183..22948276, 22948357..22948906) /locus_tag="TCM_029499" /product="Translation initiation factor eIF-2B subunit delta, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02640.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s02640.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10611t00001" mobile_element 22942799..22943511 /note="source:scaffold_2_CACTA_0243 6524 7246" /mobile_element_type="transposon:TIR/CACTA" mRNA join(22943515..22944081,22944256..22944337, 22946079..22946173,22946313..22946384,22946465..22946544, 22946656..22946740,22947573..22947620,22947711..22947755, 22947849..22947986,22948183..22948276,22948357..22948926) /locus_tag="TCM_029499" /product="Translation initiation factor eIF-2B subunit delta, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02640.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s02640.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6523t1; inference alignment:Newbler:10:TSA:cgbaL_g10611t00001" mRNA join(22943518..22944079,22946463..22946544, 22946656..22946740,22947573..22947620,22947711..22947776, 22947849..22947986,22948183..22948276,22948357..22948926) /locus_tag="TCM_029499" /product="Translation initiation factor eIF-2B subunit delta, putative isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02640.1" /inference="similar to AA sequence:Phytozome:Glyma15g10160.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc331t10; inference alignment:Newbler:10:TSA:cgbaL_g10611t00001" mRNA join(22943518..22944079,22946463..22946544, 22946656..22946740,22947573..22947620,22947711..22947755, 22947849..22947986,22948183..22948276,22948357..22948926) /locus_tag="TCM_029499" /product="Translation initiation factor eIF-2B subunit delta, putative isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02640.1" /inference="similar to AA sequence:Phytozome:Glyma15g10160.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc331t4; inference alignment:Newbler:10:TSA:cgbaL_g10611t00001" mRNA join(<22943708..22944081,22944256..22944337, 22946079..22946173,22946313..22946384,22946465..22946544, 22946656..22946740,22947573..22947620,22947711..22947776, 22947849..22947984,22948161..>22948183) /locus_tag="TCM_029499" /product="Translation initiation factor eIF-2B subunit delta, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02640.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s02640.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01711t00002; inference alignment:Newbler:10:TSA:cgbaL_g10611t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc393t4" CDS join(<22943710..22944081,22944256..22944337, 22946079..22946173,22946313..22946384,22946465..22946544, 22946656..22946740,22947573..22947620,22947711..22947776, 22947849..22947984,22948161..>22948183) /locus_tag="TCM_029499" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Translation initiation factor eIF-2B subunit delta, putative isoform 4" /protein_id="EOY27720.1" /db_xref="Phytozome:POPTR_0011s02640.1" /db_xref="TAIR:AT5G46250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MS45" /translation="EKKRKRKGGRVLIFDPFNQNFFPSPLLSLPKMDSHVGPTTATAT ATAGPTPNSPPRDLLDFIPVGSPEEEITSPPSEEDHDHDHDRDHYHYHEHGQDQDQNQ SHDNSSATGVLTEDLKNKIIKQVEYYFSDVNLPTDKYMMSLIKKNKDGFVPISVIASF RKMKKLTRNYPSIITALKESSLLVVSSDEKKVKRKNPLPFIEVRDPKLFTVLVENLPE DHSVENIRRIFGEVGRIKNISIYDPLAVEESKKKGRADILISSKIHALVEYETVEAAE KAVATLNDEQDWRNGMRVKLLKRVSKYGQRRQAWRGSDPEKNSTGRASDQTGDEENNT SSEHHEDIPDEVSSLLHLR" CDS join(22943803..22944081,22944256..22944337, 22946079..22946173,22946313..22946384,22946465..22946544, 22946656..22946740,22947573..22947620,22947711..22947776, 22947849..22947986,22948183..22948276,22948357..22948481) /locus_tag="TCM_029499" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Translation initiation factor eIF-2B subunit delta, putative isoform 1" /protein_id="EOY27717.1" /db_xref="Phytozome:POPTR_0011s02640.1" /db_xref="TAIR:AT5G46250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0Z4" /translation="MDSHVGPTTATATATAGPTPNSPPRDLLDFIPVGSPEEEITSPP SEEDHDHDHDRDHYHYHEHGQDQDQNQSHDNSSATGVLTEDLKNKIIKQVEYYFSDVN LPTDKYMMSLIKKNKDGFVPISVIASFRKMKKLTRNYPSIITALKESSLLVVSSDEKK VKRKNPLPFIEVRDPKLFTVLVENLPEDHSVENIRRIFGEVGRIKNISIYDPLAVEES KKKGRADILISSKIHALVEYETVEAAEKAVATLNDEQDWRNGMRVKLLKRVSKYGQRR QAWRGSDPEKNSTGRASDQTGDEENNTSSEHHEDIPDEEDGEHLSKDKNGHRFRNRGR ARRQKHRGTNGLGHGSTSAHAIEPSKPPPGPRMPDGTRGFTMGRGRPLDSKQS" CDS join(22943803..22944081,22944256..22944337, 22946079..22946173,22946313..22946384,22946465..22946544, 22946656..22946740,22947573..22947620,22947711..22947755, 22947849..22947986,22948183..22948276,22948357..22948481) /locus_tag="TCM_029499" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Translation initiation factor eIF-2B subunit delta, putative isoform 2" /protein_id="EOY27718.1" /db_xref="Phytozome:POPTR_0011s02640.1" /db_xref="TAIR:AT5G46250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0Z4" /translation="MDSHVGPTTATATATAGPTPNSPPRDLLDFIPVGSPEEEITSPP SEEDHDHDHDRDHYHYHEHGQDQDQNQSHDNSSATGVLTEDLKNKIIKQVEYYFSDVN LPTDKYMMSLIKKNKDGFVPISVIASFRKMKKLTRNYPSIITALKESSLLVVSSDEKK VKRKNPLPFIEVRDPKLFTVLVENLPEDHSVENIRRIFGEVGRIKNISIYDPLAVEES KKKGRADILISSKIHALVEYETVEAAEKAVATLNDEQDWRNGMRSKYGQRRQAWRGSD PEKNSTGRASDQTGDEENNTSSEHHEDIPDEEDGEHLSKDKNGHRFRNRGRARRQKHR GTNGLGHGSTSAHAIEPSKPPPGPRMPDGTRGFTMGRGRPLDSKQS" CDS join(22943803..22944079,22946463..22946544, 22946656..22946740,22947573..22947620,22947711..22947776, 22947849..22947986,22948183..22948276,22948357..22948481) /locus_tag="TCM_029499" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Translation initiation factor eIF-2B subunit delta, putative isoform 6" /protein_id="EOY27722.1" /db_xref="Phytozome:Glyma15g10160.1" /db_xref="TAIR:AT5G46250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0Z4" /translation="MDSHVGPTTATATATAGPTPNSPPRDLLDFIPVGSPEEEITSPP SEEDHDHDHDRDHYHYHEHGQDQDQNQSHDNSSATGVLTEDLKNKIIKQLFTVLVENL PEDHSVENIRRIFGEVGRIKNISIYDPLAVEESKKKGRADILISSKIHALVEYETVEA AEKAVATLNDEQDWRNGMRVKLLKRVSKYGQRRQAWRGSDPEKNSTGRASDQTGDEEN NTSSEHHEDIPDEEDGEHLSKDKNGHRFRNRGRARRQKHRGTNGLGHGSTSAHAIEPS KPPPGPRMPDGTRGFTMGRGRPLDSKQS" CDS join(22943803..22944079,22946463..22946544, 22946656..22946740,22947573..22947620,22947711..22947755, 22947849..22947986,22948183..22948276,22948357..22948481) /locus_tag="TCM_029499" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Translation initiation factor eIF-2B subunit delta, putative isoform 7" /protein_id="EOY27723.1" /db_xref="Phytozome:Glyma15g10160.1" /db_xref="TAIR:AT5G46250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0Z4" /translation="MDSHVGPTTATATATAGPTPNSPPRDLLDFIPVGSPEEEITSPP SEEDHDHDHDRDHYHYHEHGQDQDQNQSHDNSSATGVLTEDLKNKIIKQLFTVLVENL PEDHSVENIRRIFGEVGRIKNISIYDPLAVEESKKKGRADILISSKIHALVEYETVEA AEKAVATLNDEQDWRNGMRSKYGQRRQAWRGSDPEKNSTGRASDQTGDEENNTSSEHH EDIPDEEDGEHLSKDKNGHRFRNRGRARRQKHRGTNGLGHGSTSAHAIEPSKPPPGPR MPDGTRGFTMGRGRPLDSKQS" CDS join(22943803..22944081,22944256..22944337, 22946079..22946173,22946313..22946384,22946465..22946544, 22946656..22946740,22947573..22947620,22947711..22947776, 22947849..22948052) /locus_tag="TCM_029499" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Translation initiation factor eIF-2B subunit delta, putative isoform 3" /protein_id="EOY27719.1" /db_xref="Phytozome:POPTR_0011s02640.1" /db_xref="TAIR:AT5G46250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MS45" /translation="MDSHVGPTTATATATAGPTPNSPPRDLLDFIPVGSPEEEITSPP SEEDHDHDHDRDHYHYHEHGQDQDQNQSHDNSSATGVLTEDLKNKIIKQVEYYFSDVN LPTDKYMMSLIKKNKDGFVPISVIASFRKMKKLTRNYPSIITALKESSLLVVSSDEKK VKRKNPLPFIEVRDPKLFTVLVENLPEDHSVENIRRIFGEVGRIKNISIYDPLAVEES KKKGRADILISSKIHALVEYETVEAAEKAVATLNDEQDWRNGMRVKLLKRVSKYGQRR QAWRGSDPEKNSTGRASDQTGDEENNTSSEHHEDIPDEEVGSTFFYGSVSVSNCSTVF VT" CDS join(22943803..22944081,22944256..22944337, 22946079..22946173,22946313..22946384,22946465..22946544, 22946656..22946740,22947573..22947620,22947711..22947812) /locus_tag="TCM_029499" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Translation initiation factor eIF-2B subunit delta, putative isoform 5" /protein_id="EOY27721.1" /db_xref="Phytozome:POPTR_0011s02640.1" /db_xref="TAIR:AT5G46250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MS45" /translation="MDSHVGPTTATATATAGPTPNSPPRDLLDFIPVGSPEEEITSPP SEEDHDHDHDRDHYHYHEHGQDQDQNQSHDNSSATGVLTEDLKNKIIKQVEYYFSDVN LPTDKYMMSLIKKNKDGFVPISVIASFRKMKKLTRNYPSIITALKESSLLVVSSDEKK VKRKNPLPFIEVRDPKLFTVLVENLPEDHSVENIRRIFGEVGRIKNISIYDPLAVEES KKKGRADILISSKIHALVEYETVEAAEKAVATLNDEQDWRNGMRVKLLKRVVLLLAYL TSLT" gene 22949172..22956676 /locus_tag="TCM_029500" /note="dbxref CacaoGD:Thecc1EG029500" mRNA join(22949172..22949869,22949956..22950176, 22950328..22950778,22950877..22950941,22951617..22951810, 22952519..22952727,22953088..22953216,22954558..22954677, 22954764..22954809,22954914..22954999,22955265..22955394, 22956122..22956676) /locus_tag="TCM_029500" /product="Phospho-N-acetylmuramoyl-pentapeptide- transferase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021436001" /inference="similar to AA sequence:frave:gene30590" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6121t4" CDS join(22949621..22949869,22949956..22950176, 22950328..22950778,22950877..22950941,22951617..22951810, 22952519..22952727,22953088..22953216,22954558..22954677, 22954764..22954809,22954914..22954999,22955265..22955394, 22956122..22956189) /locus_tag="TCM_029500" /note="dbxref frave:gene30590" /codon_start=1 /product="Phospho-N-acetylmuramoyl-pentapeptide- transferase" /protein_id="EOY27724.1" /db_xref="TAIR:AT4G18270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49730" /translation="MRFHSLSLNLQYFSSSGLLPSPKRHSFVPVLSRLGFLSSSRLRG AAASSFYSPLKLQLKRSENVRKRRRRSRHDVVQVNATDDDSAGISSFDDWVVDDSVAA YMFSSSSDGEDSDGEILLNPLTEVDLPPVRVSTDDAITMTTHRLALIGRGQRRHRIYL GLLINLALVIFLTMVLLFVDWCGWKIVRLPLAPFYLTSPFFISLILAACAGYVCVPLL KGLKFLQIIRKEGPARHSRKKRTPTMGGLFFIPAGISVAKFVTGFSSIEVSAATAATL AFAAIGLLDDVLSFIKQQNSGLSPWLRLFLEATVGIWFSFWLDAASLSSPYGMKMLVP LPPPMGIIYLGKYYLLLTSFCFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIAVLPVC PELAIFGASMAGACVGFLLHNRYKASVFMGDTGSLALGGALAAMAACTGMFFPLFISS GFFVLEASSVILQVLYFKTTKHLRGSGRRLFRMAPFHHHLELLGLKEPMIVAVAYISR RKTREPKEENLTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETMVRITGGMKV KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA RCGMKIGRIEDATPIPTDGTRRKGGRRGRRL" mobile_element complement(22958155..22958963) /note="source:scaffold_4_CACTA_0506 2691 3544" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22959411..22959495) /note="source:scaffold_10_CACTA_0127 7397 7483" /mobile_element_type="transposon:TIR/CACTA" gene 22960009..22962286 /locus_tag="TCM_029501" /note="dbxref CacaoGD:Thecc1EG029501" mRNA 22960009..22962286 /locus_tag="TCM_029501" /product="Cytochrome P450, family 710, subfamily A, polypeptide 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g10180.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s13670.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6125t1" CDS 22960401..22961909 /locus_tag="TCM_029501" /codon_start=1 /product="Cytochrome P450, family 710, subfamily A, polypeptide 1" /protein_id="EOY27725.1" /db_xref="Phytozome:POPTR_0004s13670.1" /db_xref="TAIR:AT2G34500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64697" /translation="MTSFLSFLSSLTPYLVTFFVLVLFLEQISYLRKKRNAPGPNIVL PFLGNAISLIRKPTRFWELQAELAASVGFSVNYVVGRFIVFIRSTELSHLIFANVRPD AFLLVGHPFGKKLFGEHNLIYMFGQDHKDLRRQIAPNFTPRALSTYTTLQQIIILKHL KLWERLSSESPVEPISLRLLAREMNLETSQTVFVGRYLSRESREKFRDDYNLFNTGLM KLPFDLPGFAFRNARLAVERLVKTLTDCAAQSKERMLQGDEPSCLIDYWMQETVREIT ESKAAPPRSADEEIGSYLFDFLFAAQDASTSSLLWAVTLLDSHPDVLRKVREEVSRIW SPESDVLISADQVREMKYTQAVAREVVRYRAPATLVPHIAMEDFPLTGSYTIPKGTIV FPSVFESSFQGFTEADRFEPERFSEERQEDVIFKRNYLAFGAGPHQCVGQRYALNHLV LFIAMFATLLDFKRHRTDGCDEIMYCPTICPKDGCKVFLSRRCARYPNLSIN" gene 22966802..22969925 /locus_tag="TCM_029502" /note="dbxref CacaoGD:Thecc1EG029502" mRNA join(22966802..22967366,22967524..22967599, 22968290..22968404,22969253..22969925) /locus_tag="TCM_029502" /product="60S ribosomal protein L18a, plant, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g10200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032256t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021434001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g13049t00001" CDS join(22967171..22967366,22967524..22967599, 22968290..22968404,22969253..22969312) /locus_tag="TCM_029502" /note="paralog of Thecc1EG032256t1" /codon_start=1 /product="60S ribosomal protein L18a, plant, putative" /protein_id="EOY27726.1" /db_xref="Phytozome:GSVIVT01021434001" /db_xref="TAIR:AT1G17080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SVW7" /translation="MSEEGKNRGVTSNPQSQYRYGTFQGVANYYPPFPLQPPQPFVGF PQPVPPPGSANPYVHGYQTVTGYPVVEATPLRRRRLPVCGLGMGWLLFFLGFFFGGIP WYIGTFILLCVQVDCREKAGYLACAIASVIAMIAVTFGVTKGAHAW" gene 22970617..22972410 /locus_tag="TCM_029504" /note="dbxref CacaoGD:Thecc1EG029504" mRNA join(22970617..22970683,22970997..22971112, 22971209..22971272,22971964..22972410) /locus_tag="TCM_029504" /product="Ribosomal protein L18ae/LX family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_1064s00200.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001988t1" /inference="similar to AA sequence:Phytozome:POPTR_1064s00200.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16480t1" CDS join(22970669..22970683,22970997..22971112, 22971209..22971272,22971964..22972305) /locus_tag="TCM_029504" /note="paralog of Thecc1EG001988t1" /codon_start=1 /product="Ribosomal protein L18ae/LX family protein" /protein_id="EOY27727.1" /db_xref="Phytozome:POPTR_1064s00200.1" /db_xref="TAIR:AT2G34480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P51418" /translation="MVTFRYHQYQVVGRALPTESDEHPKIYRMRLWATNEVRAKSKFW YFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLN GAVEQMYNEMASRHRVRFPCIQIIKTATIPAKLCKRDSTKQFHNSKIKFPLVFKKVRP PTRKLKTTYKASRPNLFM" gene 22976354..22978468 /locus_tag="TCM_029506" /note="dbxref CacaoGD:Thecc1EG029506" mRNA join(22976354..22976827,22977027..22977188, 22977852..22978000,22978093..22978468) /locus_tag="TCM_029506" /product="Cytochrome B561-related protein, putative" /inference="alignment:exonerate- protein:2:ricco:29693.m002026" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001993t1" /inference="similar to AA sequence:ricco:29693.m002026" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc982t6" CDS join(22976690..22976827,22977027..22977188, 22977852..22978000,22978093..22978447) /locus_tag="TCM_029506" /note="dbxref ricco:29693.m002026; paralog of Thecc1EG001993t1" /codon_start=1 /product="Cytochrome B561-related protein, putative" /protein_id="EOY27728.1" /db_xref="TAIR:AT4G18260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1H8M6" /translation="MQVSHFLGSFTIPALYVFLLALVSCSSHGEDTASSNHKSIKENV HKLSPQMTSYIAIHGLLLWVSMGFLMPAGILFIRMANKEEGGRRVKVLFYLHAMLQIL AVLLATIGAIMSIKNFENSFNNSHQRLGLALYGAIWMQALIGFFRPPRGNKRRSTWYL THWILGTAVSLVGIINIYTGLNAYHKKTSRSTGIWTILFTAEVSFVAFFYLFQDKWEY IQKQGLILGNAPQPTPPSDQENATEQRDNQKVMLPEPCGKRNALRNLFD" gene 22979362..22982672 /locus_tag="TCM_029508" /note="dbxref CacaoGD:Thecc1EG029508" mRNA join(22979362..22979638,22979732..22979917, 22980443..22980503,22981072..22981273,22981575..22981696, 22981821..22981925,22982175..22982672) /locus_tag="TCM_029508" /product="Urease accessory protein G" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s24500.1" /inference="similar to AA sequence:frave:gene30580" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6226t3" CDS join(22979466..22979638,22979732..22979917, 22980443..22980503,22981072..22981273,22981575..22981696, 22981821..22981925,22982175..22982258) /locus_tag="TCM_029508" /note="dbxref frave:gene30580" /codon_start=1 /product="Urease accessory protein G" /protein_id="EOY27729.1" /db_xref="TAIR:AT2G34470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B4FL34" /translation="MYSPHFSLNTHGEGLSHSKTFADCSQMASNDHHVHDHHHHDHDH DHDHHHHHHDHDHDKSTTSWVGADGRVYHSHDGLAPHSHEPIYSPGFFSRRAPPLGNR DFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLVKHGAL PEERIRAVETGGCPHAAIREDISINLGPLEELSNLYKTDILLCESGGDNLAANFSREL ADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLAPAVGADLGVMERDALRMRDG GPFVFAQVKHGHGVEDIVNHILQAWEAATGKKRK" gene 22982762..22984830 /locus_tag="TCM_029509" /note="dbxref CacaoGD:Thecc1EG029509" mRNA join(22982762..22983221,22983333..22983656, 22984389..22984830) /locus_tag="TCM_029509" /product="Cytochrome b561/ferric reductase transmembrane protein family" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021428001" /inference="similar to AA sequence:Phytozome:POPTR_0011s02680.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09491t00001" CDS join(22982947..22983221,22983333..22983656, 22984389..22984548) /locus_tag="TCM_029509" /codon_start=1 /product="Cytochrome b561/ferric reductase transmembrane protein family" /protein_id="EOY27730.1" /db_xref="Phytozome:POPTR_0011s02680.1" /db_xref="TAIR:AT4G18260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BGW4" /translation="MGEEERKKRVVVESLGWLTESSIMPKKHRAIEGVGASSILELKA QLYKSQEESKKSKELSGPDVEYHRAKRKIAPHDTFSLKNSGVEARALKDKLELKAVND GSVSYAALEKKAELYDKLVRGELSDEEDKEKYCVDFFTKGVEQEESQQPQVDRASDNV QAGDEDGDSDGGPSLFNTNFVGPGRTAGIIDNDEHKRFVREVHEEANQAREKVSELKL RRQEQAAARREKLRQAYLRKQLEKLKAASKTEQT" mobile_element complement(22985919..22985984) /note="source:scaffold_3_CACTA_0377 2101 2168" /mobile_element_type="transposon:TIR/CACTA" gene complement(22985991..22986605) /locus_tag="TCM_029510" /note="dbxref CacaoGD:Thecc1EG029510" mRNA complement(22985991..22986605) /locus_tag="TCM_029510" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29693.m002029" /inference="similar to AA sequence:frave:gene30578" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g15218t00001" CDS complement(22986201..22986530) /locus_tag="TCM_029510" /note="dbxref frave:gene30578" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27731.1" /translation="MKTYAVVYVEDDHVAKAHVDEHGGTNPSWNEVVKVKFHAKLPEK DVLAALNFDIYAHGHMREKPVGGARVLLCDVLKGGDTSEPVDNPVQSMTVYVWRSSGR PQGLLNL" gene complement(22988173..22991318) /locus_tag="TCM_029511" /note="dbxref CacaoGD:Thecc1EG029511" mRNA complement(join(22988173..22988652,22989085..22989357, 22990285..22990404,22990618..22990830,22990934..22991318)) /locus_tag="TCM_029511" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021427001" /inference="similar to AA sequence:Phytozome:GSVIVT01021427001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc598t8_C2" CDS complement(join(22988488..22988652,22989085..22989357, 22990285..22990404,22990618..22990830,22990934..22991224)) /locus_tag="TCM_029511" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY27732.1" /db_xref="Phytozome:GSVIVT01021427001" /db_xref="TAIR:AT2G34460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMJ1" /translation="MDYSYLHVNKKILRTQNITRHVAELELSSNRAEEEGRLVAGVGF SIILSSPNLCMATLHLRNSLLSHLHLCSLSFTKTFPSVSLTTTSRTSPLNSTKMEGSE ITEERSESSETNANVKKKIFVAGATGSTGKRVVEQLLAKGFAVKAGVRDLDKAKNLLS KDNPALQVVKADVTEGSAKLVEAIGDDSEAVICATGFRPGWDLFAPWKVDNFGTVNLV EACRKLGVNRFILISSILVNGAAMGQLFNPAYIFLNVFGLTLIAKLQAEQYIRKSGID YTIIRPGGLRNEPPTGNVVMEPEDTLYEGTISRDQVAEVAVESLVHPESSFKVVEIVS RTEAPKRSYKDLFGSIKQT" gene complement(22991213..22996510) /locus_tag="TCM_029512" /note="dbxref CacaoGD:Thecc1EG029512" mRNA complement(join(22991213..22991869,22992091..22992232, 22992344..22992502,22992632..22992768,22993070..22993159, 22993242..22993301,22993545..22993747,22993820..22993985, 22994077..22994285,22994370..22994524,22994719..22994955, 22995055..22995293,22995372..22995502,22995791..22995999, 22996098..22996195,22996311..22996446)) /locus_tag="TCM_029512" /product="Mini-chromosome maintenance protein MCM3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021426001" /inference="similar to AA sequence:ricco:29693.m002033" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6182t1" CDS complement(join(22991810..22991869,22992091..22992232, 22992344..22992502,22992632..22992768,22993070..22993159, 22993242..22993301,22993545..22993747,22993820..22993985, 22994077..22994285,22994370..22994524,22994719..22994955, 22995055..22995293,22995372..22995502,22995791..22995999, 22996098..22996195,22996311..22996376)) /locus_tag="TCM_029512" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29693.m002033" /codon_start=1 /product="Mini-chromosome maintenance protein MCM3 isoform 1" /protein_id="EOY27733.1" /db_xref="TAIR:AT5G46280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1A2" /translation="MEMGAQDYADRKKDISQFLSQDIYQDEIKAMINHKRRRLIVNIS DLHSFSNLAPRILKNPSEYMQPFCDAVTEAARSIDPKYLKEGEILQVGFEGPFVSRRV TPRELLSEFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPATENFTVREYRDITSNNGLP TGSVYPTRDENGNLLVTEYGLCQYKDHQTLSIQEVPENAAPGQLPRTVDVIVEDDLVD SCKPGDRLAIVGIYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPEDLKNI KKIAERDDTFDLLGNSLAPSIFGHSWIKKAVVLLMLGGVEKNLKNGTHLRGDINMMMV GDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLGD RGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYD RSLTPTKNIGLPDSLLSRFDLLFIVLDQMDADIDRQISEHVLRMHRYRSAIDGGEAAL DGSSRYGREDEADADSSVFVKYNRMLHGRKTERGRKRDTLTIKFLKKYIHYAKHRIQP ELTDEASEHIATAYAELRNASSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVTN IDVEAALKVLNFAIYHKELSDMEEREQERQREEVRTRRADRQGSYKLQQKISIGSKFV LMWLTFSSFALISPTTDAMEVDDPPTAQQPTATDSVERIEAFKTIFGQHMRANHKDTI SIAEVEDVVNTRADVRYSSAEIKSLLEKLQDDNILMIAGDTVHMIV" mRNA complement(join(<22993278..22993301,22993634..22993747, 22993820..22993985,22994077..22994285,22994370..22994524, 22994719..22994955,22995055..22995293,22995372..22995502, 22995791..22995999,22996098..22996195,22996311..22996510)) /locus_tag="TCM_029512" /product="Mini-chromosome maintenance protein MCM3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021426001" /inference="similar to AA sequence:ricco:29693.m002033" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc653t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6182t1" CDS complement(join(<22993279..22993301,22993634..22993747, 22993820..22993985,22994077..22994285,22994370..22994524, 22994719..22994955,22995055..22995293,22995372..22995502, 22995791..22995999,22996098..22996195,22996311..22996376)) /locus_tag="TCM_029512" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29693.m002033" /codon_start=1 /product="Mini-chromosome maintenance protein MCM3 isoform 2" /protein_id="EOY27734.1" /db_xref="TAIR:AT5G46280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1A2" /translation="MEMGAQDYADRKKDISQFLSQDIYQDEIKAMINHKRRRLIVNIS DLHSFSNLAPRILKNPSEYMQPFCDAVTEAARSIDPKYLKEGEILQVGFEGPFVSRRV TPRELLSEFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPATENFTVREYRDITSNNGLP TGSVYPTRDENGNLLVTEYGLCQYKDHQTLSIQEVPENAAPGQLPRTVDVIVEDDLVD SCKPGDRLAIVGIYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPEDLKNI KKIAERDDTFDLLGNSLAPSIFGHSWIKKAVVLLMLGGVEKNLKNGTHLRGDINMMMV GDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLGD RGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYD RSLTPTKNIGLPDSLLSRFDLLFIVLDQMDADIDRQISEHVLRMHRYRSAIDGGEAAL DGSSRYGREDEADADSSVFVKYNRMLHGRKTERGFRTHCNS" gene complement(22996808..23002179) /locus_tag="TCM_029513" /note="dbxref CacaoGD:Thecc1EG029513" mRNA complement(join(22996808..22997286,22997348..22997470, 22997815..22997916,22998016..22998129,22998622..22998795, 22999413..22999844,23001071..23001798)) /locus_tag="TCM_029513" /product="3-ketoacyl-acyl carrier protein synthase I isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021425001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016498t1" /inference="similar to AA sequence:ricco:29693.m002034" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc72t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc64t6" mRNA complement(join(22996808..22997271,22997404..22997470, 22997815..22997915,22999444..22999844,23001071..23001761)) /locus_tag="TCM_029513" /product="3-ketoacyl-acyl carrier protein synthase I isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021425001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016498t1" /inference="similar to AA sequence:ricco:29693.m002034" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc74t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc64t6" mRNA complement(join(22996928..22997271,22997404..22997470, 22997815..22997916,22998016..22998129,22998622..22998795, 22999413..22999844,23001071..23002179)) /locus_tag="TCM_029513" /product="3-ketoacyl-acyl carrier protein synthase I isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021425001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016498t1" /inference="similar to AA sequence:ricco:29693.m002034" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc64t6" CDS complement(join(22997204..22997271,22997404..22997470, 22997815..22997916,22998016..22998129,22998622..22998795, 22999413..22999844,23001071..23001760)) /locus_tag="TCM_029513" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29693.m002034; paralog of Thecc1EG016498t1" /codon_start=1 /product="3-ketoacyl-acyl carrier protein synthase I isoform 1" /protein_id="EOY27735.1" /db_xref="TAIR:AT5G46290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P52410" /translation="MRASINKSSGQYFSFNSIHKQSSLVLFCLLLFSAVPANSNFPQH TKSTHAFFFLSFSFVSLFTSLSSPPLLPPSTMQALQAPSLRGSPLNPLQKPNPNPHFS NVSRLRPRPTKRFSSITASSPTVSAPKREKDPKKRVVITGMGLVSVFGNDVDAYYDKL LAGESGIGPIDRFDASKFPTRFGGQIRGFTSQGYIDGKNDRRLDDCLRYCIVAGKKAL EDADLGGDKLSKIDKERTGVLVGTGMGGLTVFSDGVQNLIEKGYRKITPFFIPYAITN MASALLGIELGFMGPNYSISTACATSNYCFYAAANHIRRGEAELMLAGGTEAAIIPIG LGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGSGVLVMESLEHAMKRGAPIIAE YLGGAVNCDAYHMTDPRADGLGVSSCIERSLEDAGVSPEEVNHINAHATSTLAGDLAE INAIKKVFKNTSDIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEP SVEFDTVANVKQQHEVNVAISNSFGFGGHNSVVAFSAFKP" CDS complement(join(22997369..22997470,22997815..22997916, 22998016..22998129,22998622..22998795,22999413..22999844, 23001071..23001760)) /locus_tag="TCM_029513" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29693.m002034; paralog of Thecc1EG016498t1" /codon_start=1 /product="3-ketoacyl-acyl carrier protein synthase I isoform 2" /protein_id="EOY27736.1" /db_xref="TAIR:AT5G46290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P52410" /translation="MRASINKSSGQYFSFNSIHKQSSLVLFCLLLFSAVPANSNFPQH TKSTHAFFFLSFSFVSLFTSLSSPPLLPPSTMQALQAPSLRGSPLNPLQKPNPNPHFS NVSRLRPRPTKRFSSITASSPTVSAPKREKDPKKRVVITGMGLVSVFGNDVDAYYDKL LAGESGIGPIDRFDASKFPTRFGGQIRGFTSQGYIDGKNDRRLDDCLRYCIVAGKKAL EDADLGGDKLSKIDKERTGVLVGTGMGGLTVFSDGVQNLIEKGYRKITPFFIPYAITN MASALLGIELGFMGPNYSISTACATSNYCFYAAANHIRRGEAELMLAGGTEAAIIPIG LGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGSGVLVMESLEHAMKRGAPIIAE YLGGAVNCDAYHMTDPRADGLGVSSCIERSLEDAGVSPEEVNHINAHATSTLAGDLAE INAIKKVFKNTSDIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPSINQFNPEP SVEFDTVANVKQQHEVNVGKTPNPWKPHN" CDS complement(join(22997469..22997470,22997815..22997915, 22999444..22999844,23001071..23001760)) /locus_tag="TCM_029513" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29693.m002034; paralog of Thecc1EG016498t1" /codon_start=1 /product="3-ketoacyl-acyl carrier protein synthase I isoform 3" /protein_id="EOY27737.1" /db_xref="TAIR:AT5G46290.3" /db_xref="UniProtKB/TrEMBL:UniRef50_P52410" /translation="MRASINKSSGQYFSFNSIHKQSSLVLFCLLLFSAVPANSNFPQH TKSTHAFFFLSFSFVSLFTSLSSPPLLPPSTMQALQAPSLRGSPLNPLQKPNPNPHFS NVSRLRPRPTKRFSSITASSPTVSAPKREKDPKKRVVITGMGLVSVFGNDVDAYYDKL LAGESGIGPIDRFDASKFPTRFGGQIRGFTSQGYIDGKNDRRLDDCLRYCIVAGKKAL EDADLGGDKLSKIDKERTGVLVGTGMGGLTVFSDGVQNLIEKGYRKITPFFIPYAITN MASALLGIELGFMGPNYSISTACATSNYCFYAAANHIRRGEAELMLAGGTEAAIIPIG LGGFVACRALSQRNDDPQTASRPWDKDRDGYDRALPGCSGWFRSHCHCEGHYDRMAAS LHKSI" mobile_element complement(23003336..23003389) /note="source:scaffold_5_CACTA_0612 5082 5135" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23003432..23003549) /note="source:scaffold_1_CACTA_0032 2360 2488" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23003464..23003568 /note="source:CACAO_PIF_E119_scaffold_3 4580 4683" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 23004044..23006324 /locus_tag="TCM_029514" /note="dbxref CacaoGD:Thecc1EG029514" mRNA join(23004044..23004276,23004455..23004637, 23005051..23005108,23005215..23005259,23005917..23005997, 23006116..23006324) /locus_tag="TCM_029514" /product="HMG-box DNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s13630.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021424001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16468t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16468t1" mRNA join(23004105..23004276,23004455..23004637, 23005051..23005108,23005215..23005259,23005545..23005616, 23005917..23005944) /locus_tag="TCM_029514" /product="HMG-box DNA-binding family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s13630.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021424001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc97t7; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16468t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc97t4" CDS join(23004188..23004276,23004455..23004637, 23005051..23005108,23005215..23005259,23005917..23005997, 23006116..23006166) /locus_tag="TCM_029514" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="HMG-box DNA-binding family protein isoform 1" /protein_id="EOY27738.1" /db_xref="Phytozome:GSVIVT01021424001" /db_xref="TAIR:AT2G34450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3Z6" /translation="MAKKATKSKKSRSSSTSAASAKNPSTPSNQKMVLRVKSSEKMKR SAQQSVVSEREKRRTSKSRPKSKQKKKNTRIDAKMPKKPPTAFFYFLEDFRKEFQEQN PDIKSMRDIGRACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRKENGEDQET EDDSEFDE" CDS join(23004188..23004276,23004455..23004637, 23005051..23005108,23005215..23005259,23005545..23005547) /locus_tag="TCM_029514" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="HMG-box DNA-binding family protein isoform 2" /protein_id="EOY27739.1" /db_xref="Phytozome:GSVIVT01021424001" /db_xref="TAIR:AT2G34450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3Z6" /translation="MAKKATKSKKSRSSSTSAASAKNPSTPSNQKMVLRVKSSEKMKR SAQQSVVSEREKRRTSKSRPKSKQKKKNTRIDAKMPKKPPTAFFYFLEDFRKEFQEQN PDIKSMRDIGRACGEKWKTMTYE" gene complement(23006115..23009079) /locus_tag="TCM_029515" /note="dbxref CacaoGD:Thecc1EG029515" mRNA complement(join(23006115..23006849,23006987..23007109, 23007263..23007370,23007470..23007559,23007879..23007938, 23008094..23008156,23008417..23008491,23008568..23008633, 23008726..23009035)) /locus_tag="TCM_029515" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02610.1" /inference="similar to AA sequence:ricco:29693.m002036" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc98t10; alternateUTRof:Thecc1EG029515t1; inference alignment:Newbler:10:TSA:cgbaB_g10963t00001" mRNA complement(join(23006226..23006849,23006987..23007109, 23007263..23007370,23007470..23007559,23007879..23007938, 23008094..23008156,23008417..23008491,23008568..23008633, 23008726..23009079)) /locus_tag="TCM_029515" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02610.1" /inference="similar to AA sequence:ricco:29693.m002036" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10963t00001" CDS complement(join(23006718..23006849,23006987..23007109, 23007263..23007370,23007470..23007559,23007879..23007938, 23008094..23008156,23008417..23008491,23008568..23008633, 23008726..23008929)) /locus_tag="TCM_029515" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29693.m002036" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0Z1" /translation="MHSSICMSISPSSNTALKYSLNSFLGNFLPSKPYAHVRRSACVT TAKALLSTTKEAALKDFHERRALKIISGLQNFDRNNVASVVTAADKGGATHVDIACDP ELVKLAISLTSLPVCVSSVDPAAFSAAVEAGALMVEIGNYDSFYETGVVFSPEQILKL TKETRSILPSVTLSVTVPHTLSLPDQVKLAELLEREGVDIIQTEGGKCSTPSKSGVLG LIEKATPTLAAAYSISRAVRIPVMCSSGLSAVTAPMAITAGAAGVGVGSAVNKLNDVI AMVAEVRSIAESLSTVADRQTTTRERSFNI" CDS complement(join(23006718..23006849,23006987..23007109, 23007263..23007370,23007470..23007559,23007879..23007938, 23008094..23008156,23008417..23008491,23008568..23008633, 23008726..23008929)) /locus_tag="TCM_029515" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29693.m002036" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27741.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0Z1" /translation="MHSSICMSISPSSNTALKYSLNSFLGNFLPSKPYAHVRRSACVT TAKALLSTTKEAALKDFHERRALKIISGLQNFDRNNVASVVTAADKGGATHVDIACDP ELVKLAISLTSLPVCVSSVDPAAFSAAVEAGALMVEIGNYDSFYETGVVFSPEQILKL TKETRSILPSVTLSVTVPHTLSLPDQVKLAELLEREGVDIIQTEGGKCSTPSKSGVLG LIEKATPTLAAAYSISRAVRIPVMCSSGLSAVTAPMAITAGAAGVGVGSAVNKLNDVI AMVAEVRSIAESLSTVADRQTTTRERSFNI" gene 23009224..23012493 /locus_tag="TCM_029516" /note="dbxref CacaoGD:Thecc1EG029516" mRNA join(23009224..23009708,23009847..23010842, 23010929..23012493) /locus_tag="TCM_029516" /product="Cation proton exchanger, putative" /inference="alignment:exonerate- protein:2:ricco:29693.m002037" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001511t1" /inference="similar to AA sequence:ricco:29693.m002037" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2310t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6153t1" CDS join(23009481..23009708,23009847..23010842, 23010929..23012221) /locus_tag="TCM_029516" /note="dbxref ricco:29693.m002037; paralog of Thecc1EG001511t1" /codon_start=1 /product="Cation proton exchanger, putative" /protein_id="EOY27742.1" /db_xref="TAIR:AT2G13620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3Z5" /translation="MDPDIENAEHNEINNASIQCFILNITKHNGIWQGDNPFTESLPL LVTQLAAILILTRSLYHLLKPLRQPRIISDILGGILLGPSALGTTIYFADLFPTINVI TVETLAYMALVFHMFLVGLEIDLNVIGRISKKAISFTVTGLLFPFTVGIGFFYLLHAY WEHDQSQGFEVNVQGSFLWAAALAVTSFPVVSGILSDLKLLNSDIGRLAMPIALVSDM GSWVLIVIVIPFCANPTNAPYIITTTIAYVLACVYTFRPFLAWIIRRTSKGKDQNYSK FYLCFVLVGVVLSAFVTDVTGTHSIVGAFVFGLILPTELALVLIERFEYFVSGLLMPV FFAVSGVRVDIFKISEWRLVLLIVVWLCAVKIISFLPISLVSDIKPKDSFALGLLMNT KGVWAILIIHTGLDRGVLQDDDYAVMMITILLMTSIVAPIIAAIYKRTNLSTRYERRT IQHASTEAELRILACIHSFCSVPGILKLLDVSQTTQNGHITVFTLHLVELSGCASAML IVHDSQNRRFEDPVFDPDYGDSSETEKIVNAFREYENKNGNISIQSLTAVSPFVAMHG DICSLAEDKQATFLILPFHKQATKEGTLPEINAAFRDINKNVLLNAPCSVGIYIDRGL QETAGAKSNNKIHQIAMVFLGGPDDCEALAYAWRMAKNPGVRLTVIRLLEMDTMDFPN GKASMLYSRSYLDRQREIADEYINEFRLRTVGEELIHYEEKILLNGEELAVTLKEIEN KFELFIVGRREGLESPLTTLLVTRVDCPELGVIGDLLANSNSATGSVLVVQQFIDSSQ GIEDLVATPRSSMHGTVREVGSGRLSTVSGIGLGMYTRQK" mobile_element complement(23012525..23013079) /note="source:CACAO_M_E4753_F17_scaffold_2 7256 7825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23013080..23013747) /note="source:scaffold_10_CACTA_0140 6108 7308" /mobile_element_type="transposon:TIR/CACTA" gene complement(23015137..23019304) /locus_tag="TCM_029517" /note="dbxref CacaoGD:Thecc1EG029517" mRNA complement(join(23015137..23016380,23018983..23019304)) /locus_tag="TCM_029517" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02720.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s02720.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6166t1" CDS complement(join(23015900..23016380,23018983..23019071)) /locus_tag="TCM_029517" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27743.1" /db_xref="Phytozome:POPTR_0011s02720.1" /translation="MGRLKIVPNDSTVAWQIGKAISCHVHAPNQTPPTFHTNTISDFD SLKRGAVGRLKFTKLPSPTKINPPSPTIPFIRVLLKLNFSSPIYNCLETRLPLQPKAK VPKRKKRKNKKKKKEVMGGTKRWVLFKRLIKKESWRWKFLGSAFKWKRLNIQLSFVDD VLFRIASVLEAIFLVATLCFFYLCCGCHF" mobile_element 23021668..23021944 /note="source:CACAO_MITE109_scaffold_6 1 277" /mobile_element_type="transposon:TIR/MITE" gene complement(23022984..23024207) /locus_tag="TCM_029518" /note="dbxref CacaoGD:Thecc1EG029518" mRNA complement(23022984..23024207) /locus_tag="TCM_029518" /product="Agamous-like MADS-box protein A, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s13600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029519t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s13600.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g15833t00001" CDS complement(23023614..23024162) /locus_tag="TCM_029518" /note="paralog of Thecc1EG029519t1" /codon_start=1 /product="Agamous-like MADS-box protein A, putative" /protein_id="EOY27744.1" /db_xref="Phytozome:POPTR_0004s13600.1" /db_xref="TAIR:AT2G34440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3Z4" /translation="MGRRKIEMEMVKDSSSRQVTFSKRRTGLFKKANELATLCGAQVA IVVFSPGGKPFSFGHPSVEAVTQQFLNQDTKPKVSISAQVGSQQQAKVEKLSQQLNDL LKQIQAEKKRGEMLDKEIKASGKHKCQKPVNELSLDELLQMKQSMEELREKLKGRVSE IEASSSLLLLSNNGAKEADPAN" gene complement(23025441..23031527) /locus_tag="TCM_029519" /note="dbxref CacaoGD:Thecc1EG029519" mRNA complement(join(23025441..23025817,23026196..23027408, 23029507..23029900,23031222..23031527)) /locus_tag="TCM_029519" /product="Agamous 57" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s13590.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s13590.1" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(23026573..23027408,23029507..23029900, 23031222..23031305)) /locus_tag="TCM_029519" /codon_start=1 /product="Agamous 57" /protein_id="EOY27745.1" /db_xref="Phytozome:POPTR_0004s13590.1" /db_xref="TAIR:AT3G04100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GII0" /translation="MKCIPKARTFQPRHHQQRIQERTKGLRQTKACQKIEIKRNEDDG ERFITFSERKSGIYKKAIELHVTLCGDGIGILVFSSAGKPFYYGHPSIESITNRCLRH RSLLRRVYEIKIRASASSLPSTNPAQATNPFASYRHEYFRNEDDHKRNGNISVNKVVG SGKKTRGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATMCGAEIAFIVFSPAGK PFSYGHPSVESVVNRYLNQNPLPNDNTHPLVEAHRKVRINTLAQQHNELVTQLDAEKE RGKMLDQLTRGKETKGWWEAPIDQLNQQELEKLYLSFAELRTSLHSKMKEKSAEATSS QLALMDPAQLTTPFPANPFPTYLNEQVPAQLNAPFPTNPFPTNLNEQVPAQLNAPFPT NPFPTNLNVQVPAQLTTPFPTNPFPTNLNEQVPGFFPPGFGPGRQ" gene 23033313..23041890 /locus_tag="TCM_029520" /note="dbxref CacaoGD:Thecc1EG029520" mRNA join(23033313..23033921,23035747..23035797, 23036763..23036796,23036910..23036996,23037092..23037143, 23038074..23038251,23038387..23038482,23038730..23038790, 23039195..23039259,23039448..23039522,23039614..23039689, 23040467..23040644,23041297..23041717) /locus_tag="TCM_029520" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021418001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002003t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021418001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc151t2" mRNA join(23033557..23033921,23035747..23035797, 23036763..23036796,23036910..23036996,23037092..23037143, 23038074..23038251,23038387..23038482,23038730..23038790, 23039195..23039259,23039448..23039522,23039614..23039689, 23040467..23040627,23041339..23041668,23041752..23041890) /locus_tag="TCM_029520" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021418001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002003t2" /inference="similar to AA sequence:Phytozome:GSVIVT01021418001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc151t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc151t2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc150t7" CDS join(23033814..23033921,23035747..23035797, 23036763..23036796,23036910..23036996,23037092..23037143, 23038074..23038251,23038387..23038482,23038730..23038790, 23039195..23039259,23039448..23039522,23039614..23039689, 23040467..23040644,23041297..23041570) /locus_tag="TCM_029520" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002003t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27746.1" /db_xref="Phytozome:GSVIVT01021418001" /db_xref="TAIR:AT3G59090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q945Q2" /translation="MFEEKEKSCTFPRELVGVNVGLAFFDGIIAVIAFSQLARIHFRN LQLGWTRQKVFHLLIGSTNAGYFVYFVLTLVAACRGWLCWSYSCGFIAMAFPRILFFA TFLLLLSFWVDLCHQADDEEEEDDEQGFLEALLQNSLNRPRSSTTDSRRICYPFRLIH VGSRQKIVILVTVLVFLFMLTFAVLIWIGMEDNPIDSSTVARVYVDLFAAAILLLGGA LACYGLLLCRKMRNVRSERASSEIWKVAGLAIVSVLCFTSSALVALLTDIPVLYHWHE LHIDGVYTSLLLILYYFIGSAVPSAFVLWVMRELPPMSANIQEESTTVFITDDPVEIR RPQSWATAASSQNQVHIPSLIYGRDPLTCGCYRRDQEVVLYNCSVIRKHVCLSSQASN VSWKLEKSDAIRVDCAMSSDQKVTIADLTGQSEYSRKVAIAHAMFLTFGAWK" CDS join(23033814..23033921,23035747..23035797, 23036763..23036796,23036910..23036996,23037092..23037143, 23038074..23038251,23038387..23038482,23038730..23038790, 23039195..23039259,23039448..23039522,23039614..23039689, 23040467..23040627,23041339..23041362) /locus_tag="TCM_029520" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG002003t2" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY27748.1" /db_xref="Phytozome:GSVIVT01021418001" /db_xref="TAIR:AT3G59090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5JMW7" /translation="MFEEKEKSCTFPRELVGVNVGLAFFDGIIAVIAFSQLARIHFRN LQLGWTRQKVFHLLIGSTNAGYFVYFVLTLVAACRGWLCWSYSCGFIAMAFPRILFFA TFLLLLSFWVDLCHQADDEEEEDDEQGFLEALLQNSLNRPRSSTTDSRRICYPFRLIH VGSRQKIVILVTVLVFLFMLTFAVLIWIGMEDNPIDSSTVARVYVDLFAAAILLLGGA LACYGLLLCRKMRNVRSERASSEIWKVAGLAIVSVLCFTSSALVALLTDIPVLYHWHE LHIDGVYTSLLLILYYFIGSAVPSAFVLWVMRELPPMSANIQEESTTVFITDDPVEIR RPQSWATAASSQNQGSRGSPI" mRNA join(<23033896..23033921,23035199..23035268, 23035751..23035797,23036763..23036796,23036910..23036996, 23037092..23037143,23038074..23038251,23038387..23038482, 23038730..23038790,23039195..23039259,23039448..23039522, 23039614..23039689,23040467..23040627,23041339..23041668, 23041752..23041890) /locus_tag="TCM_029520" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021418001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002003t2" /inference="similar to AA sequence:Phytozome:GSVIVT01021418001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc151t6; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc150t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc151t2" CDS join(<23033898..23033921,23035199..23035268, 23035751..23035797,23036763..23036796,23036910..23036996, 23037092..23037143,23038074..23038251,23038387..23038482, 23038730..23038790,23039195..23039259,23039448..23039522, 23039614..23039689,23040467..23040627,23041339..23041362) /locus_tag="TCM_029520" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002003t2" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY27747.1" /db_xref="Phytozome:GSVIVT01021418001" /db_xref="TAIR:AT3G59090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5JMW7" /translation="IAVIAFSQLVQLHPFACSPICLPKRNGGLSCSRIHFRNLQLGWT RQKVFHLLIGSTNAGYFVYFVLTLVAACRGWLCWSYSCGFIAMAFPRILFFATFLLLL SFWVDLCHQADDEEEEDDEQGFLEALLQNSLNRPRSSTTDSRRICYPFRLIHVGSRQK IVILVTVLVFLFMLTFAVLIWIGMEDNPIDSSTVARVYVDLFAAAILLLGGALACYGL LLCRKMRNVRSERASSEIWKVAGLAIVSVLCFTSSALVALLTDIPVLYHWHELHIDGV YTSLLLILYYFIGSAVPSAFVLWVMRELPPMSANIQEESTTVFITDDPVEIRRPQSWA TAASSQNQGSRGSPI" gene complement(23041996..23043430) /locus_tag="TCM_029522" /note="dbxref CacaoGD:Thecc1EG029522" mRNA complement(join(23041996..23042200,23042619..23042689, 23042791..23042901,23042990..23043214,23043336..23043430)) /locus_tag="TCM_029522" /product="Peptidase S24/S26A/S26B/S26C family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s07770.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032238t2" /inference="similar to AA sequence:frave:gene30562" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10756t00001" mRNA complement(join(23042144..23042171,23042619..23042689, 23042791..23042901,23042990..23043221)) /locus_tag="TCM_029522" /product="Peptidase S24/S26A/S26B/S26C family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s07770.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032238t2" /inference="similar to AA sequence:frave:gene30562" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc878t3_C2; alternateUTRof:Thecc1EG029522t2; inference alignment:Newbler:10:TSA:cgbaL_g10756t00001" mRNA complement(join(23042144..23042182,23042619..23042689, 23042791..23042901,23042990..23043221)) /locus_tag="TCM_029522" /product="Peptidase S24/S26A/S26B/S26C family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s07770.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032238t2" /inference="similar to AA sequence:frave:gene30562" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc878t5_C2; alternateUTRof:Thecc1EG029522t2; inference alignment:Newbler:10:TSA:cgbaL_g10756t00001" mRNA complement(join(23042144..23042200,23042619..23042689, 23042791..23042901,23042990..23043221)) /locus_tag="TCM_029522" /product="Peptidase S24/S26A/S26B/S26C family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s07770.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032238t2" /inference="similar to AA sequence:frave:gene30562" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc878t8_C2; inference alignment:Newbler:10:TSA:cgbaL_g10756t00001" CDS complement(join(23042642..23042689,23042791..23042901, 23042990..23043214,23043336..23043422)) /locus_tag="TCM_029522" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene30562; paralog of Thecc1EG032238t2" /codon_start=1 /product="Peptidase S24/S26A/S26B/S26C family protein, putative isoform 1" /protein_id="EOY27749.1" /db_xref="TAIR:AT1G29960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PAC0" /translation="MGGWSSFISIVRAFCLLHVTNNYLGTAVFTYGPSMLPTLNISGN LLLAERISTRTGKLRPGDVVILRSPESPRKIVCKRLIGMEGDQVTYVVDPMNSDRCQT VVVPKGHVWVEGDNIYASKDSRNFGAVPYGLLKGRVFWTVLPRKDFGSLAPKPK" CDS complement(join(23042642..23042689,23042791..23042901, 23042990..23043199)) /locus_tag="TCM_029522" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene30562; paralog of Thecc1EG032238t2" /codon_start=1 /product="Peptidase S24/S26A/S26B/S26C family protein isoform 2" /protein_id="EOY27750.1" /db_xref="TAIR:AT1G29960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PAC0" /translation="MLPTLNISGNLLLAERISTRTGKLRPGDVVILRSPESPRKIVCK RLIGMEGDQVTYVVDPMNSDRCQTVVVPKGHVWVEGDNIYASKDSRNFGAVPYGLLKG RVFWTVLPRKDFGSLAPKPK" CDS complement(join(23042642..23042689,23042791..23042901, 23042990..23043199)) /locus_tag="TCM_029522" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene30562; paralog of Thecc1EG032238t2" /codon_start=1 /product="Peptidase S24/S26A/S26B/S26C family protein isoform 2" /protein_id="EOY27751.1" /db_xref="TAIR:AT1G29960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PAC0" /translation="MLPTLNISGNLLLAERISTRTGKLRPGDVVILRSPESPRKIVCK RLIGMEGDQVTYVVDPMNSDRCQTVVVPKGHVWVEGDNIYASKDSRNFGAVPYGLLKG RVFWTVLPRKDFGSLAPKPK" CDS complement(join(23042642..23042689,23042791..23042901, 23042990..23043199)) /locus_tag="TCM_029522" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene30562; paralog of Thecc1EG032238t2" /codon_start=1 /product="Peptidase S24/S26A/S26B/S26C family protein isoform 2" /protein_id="EOY27752.1" /db_xref="TAIR:AT1G29960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PAC0" /translation="MLPTLNISGNLLLAERISTRTGKLRPGDVVILRSPESPRKIVCK RLIGMEGDQVTYVVDPMNSDRCQTVVVPKGHVWVEGDNIYASKDSRNFGAVPYGLLKG RVFWTVLPRKDFGSLAPKPK" gene complement(23043554..23044907) /locus_tag="TCM_029523" /note="dbxref CacaoGD:Thecc1EG029523" mRNA complement(23043554..23044907) /locus_tag="TCM_029523" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.62 coverage" CDS complement(23044546..23044878) /locus_tag="TCM_029523" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27753.1" /translation="MHNTNALICADIFRDMRAHCHACMVLFLSPLFLLFEPVGSGVSG APSRPFFISVFQLLPSFVLIGPTSWINVAKLDFLQHHFQLVMSFPPLYNLDNRVVVNG SRAKSYGN" gene complement(23045536..23048240) /locus_tag="TCM_029524" /note="dbxref CacaoGD:Thecc1EG029524" mRNA complement(join(23045536..23046616,23047238..23047434, 23047587..23047721,23048159..23048240)) /locus_tag="TCM_029524" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29693.m002046" /inference="similar to AA sequence:ricco:29693.m002046" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01764t00001" CDS complement(23045576..23046307) /locus_tag="TCM_029524" /note="dbxref ricco:29693.m002046" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /protein_id="EOY27754.1" /db_xref="TAIR:AT1G29950.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I102" /translation="MQSDQQFYPPKAVPTLADQVGDNYMHIPVSSAFGTVFPPCAKPL PPLHGIEFQPSEACPKNFIIFDQSDHRNQIMFNPDIAHKLNGHGLNIFATYIDGKYER KDVNNVEKETSSSMKEDSDDIDALLSSEGEEQEDYDEEEMSTARTNGNYESDSADSRS AYCSKPRKNRSCSSALKSSGSGDSCDPEIKRLKMKKMVKVLRGIVPGADQMGTVAVLD EAVKYLKSLKVEVQKLGVGNFKNGD" mobile_element 23049467..23049509 /note="source:INTACT383F_F354_scaffold_3-int 4009 4051" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 23049825..23050162 /note="source:INTACT383F_F354_scaffold_3-int 4424 4772" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(23050000..23052528) /locus_tag="TCM_029526" /note="dbxref CacaoGD:Thecc1EG029526" mRNA complement(join(23050000..23050435,23050529..23050763, 23050842..23050870,23051037..23051063,23051162..23051396, 23051492..23051520,23051829..23051946)) /locus_tag="TCM_029526" /product="Glucan endo-1,3-beta-glucosidase-beta-glucanase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s34590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029528t1" /inference="similar to AA sequence:ricco:29693.m002049" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1760t1" mRNA complement(join(23050149..23050435,23050529..23050763, 23050842..23050870,23051037..23051063,23051162..23051396, 23051492..23051520,23052449..23052528)) /locus_tag="TCM_029526" /product="Glucan endo-1,3-beta-glucosidase-beta-glucanase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s34590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029528t1" /inference="similar to AA sequence:ricco:29693.m002049" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6174t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1760t1" mRNA complement(join(23050368..23050435,23050529..23050870, 23051037..23051063,23051162..23051396,23051492..23051520, 23051829..23051934)) /locus_tag="TCM_029526" /product="Glucan endo-1,3-beta-glucosidase-beta-glucanase, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s34590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029528t1" /inference="similar to AA sequence:ricco:29693.m002049" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1760t3; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1760t1" CDS complement(join(23050398..23050435,23050529..23050763, 23050842..23050870,23051037..23051063,23051162..23051396, 23051492..23051520,23051829..23051895)) /locus_tag="TCM_029526" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29693.m002049; paralog of Thecc1EG029528t1" /codon_start=1 /product="Glucan endo-1,3-beta-glucosidase-beta-glucanase, putative isoform 1" /protein_id="EOY27755.1" /db_xref="TAIR:AT2G39640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S152" /translation="MAKPIFSLPIFSLFVLFSLLHSGGSLKMANGQKTWCIANPLSSD SELAANIEFACSQLDCRLIEPDGPCFEPDTQMHHASYVMNLYYQTYGRHLANCDFRHS GVVSLTDPSYGNCTFQSGGALAEQEPSGTWCVAKPGTSDDLLQQNINFACNQVDCGPT HSGGACFYPTTLINHASYAMNLYYQTTGRKKSSCDFRETGLLVSNDPSYGNCAYQYSH D" CDS complement(join(23050398..23050435,23050529..23050870, 23051037..23051063,23051162..23051396,23051492..23051520, 23051829..23051895)) /locus_tag="TCM_029526" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29693.m002049; paralog of Thecc1EG029528t1" /codon_start=1 /product="Glucan endo-1,3-beta-glucosidase-beta-glucanase, putative isoform 3" /protein_id="EOY27757.1" /db_xref="TAIR:AT2G39640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S152" /translation="MAKPIFSLPIFSLFVLFSLLHSGGSLKMANGQKTWCIANPLSSD SELAANIEFACSQLDCRLIEPDGPCFEPDTQMHHASYVMNLYYQTYGRHLANCDFRHS GVVSLTDPSYGNCTFQSGGALAEQEPSVIWCNNMSRSMTSLGKTWHLMIMGLQGTWCV AKPGTSDDLLQQNINFACNQVDCGPTHSGGACFYPTTLINHASYAMNLYYQTTGRKKS SCDFRETGLLVSNDPSYGNCAYQYSHD" CDS complement(join(23050398..23050435,23050529..23050763, 23050842..23050870,23051037..23051063,23051162..23051396, 23051492..23051506)) /locus_tag="TCM_029526" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29693.m002049; paralog of Thecc1EG029528t1" /codon_start=1 /product="Glucan endo-1,3-beta-glucosidase-beta-glucanase, putative isoform 2" /protein_id="EOY27756.1" /db_xref="TAIR:AT2G39640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S152" /translation="MANGQKTWCIANPLSSDSELAANIEFACSQLDCRLIEPDGPCFE PDTQMHHASYVMNLYYQTYGRHLANCDFRHSGVVSLTDPSYGNCTFQSGGALAEQEPS GTWCVAKPGTSDDLLQQNINFACNQVDCGPTHSGGACFYPTTLINHASYAMNLYYQTT GRKKSSCDFRETGLLVSNDPSYGNCAYQYSHD" gene 23052682..23054011 /locus_tag="TCM_029527" /note="dbxref CacaoGD:Thecc1EG029527" mRNA join(23052682..23053071,23053129..23054011) /locus_tag="TCM_029527" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage" mobile_element 23052923..23052992 /note="source:scaffold_6_CACTA_0712 1386 1441" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23052931..23052978) /note="source:scaffold_10_CACTA_0130 1145 1192" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23052934..23052999 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3891 3956" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 23053324..23053917 /locus_tag="TCM_029527" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27758.1" /translation="MPDSKVPADDDGGCPPCNNLLSSPPPRRAEWEMSLVYRVKLSKS VSSTSKRYFSENLPRLENKSLKKITLWYCKSSEHIDKHPEIGDIRRSFRREIFSKVLQ QVGKSVFAGGIEDGGSAMTDVVVKIHLVQELGSLRLLEDREEDQCALCLEGLSLALNL ILPCWHMYHRNCILPWLRTKQECPVCRHHLPRHINLH" mobile_element complement(23055192..23055420) /note="source:CACAO_M_E22942_F59_scaffold_3 2950 3172" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(23057012..23061262) /locus_tag="TCM_029528" /note="dbxref CacaoGD:Thecc1EG029528" mRNA complement(join(23057012..23057130,23057419..23057671, 23057757..23057811,23060010..23060040,23060182..23060434, 23060546..23060574,23061007..23061262)) /locus_tag="TCM_029528" /product="Carbohydrate-binding X8 domain superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene30557" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029526t3" /inference="similar to AA sequence:ricco:29693.m002049" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16475t2" CDS complement(join(23057105..23057130,23057419..23057671, 23057757..23057811,23060010..23060040,23060182..23060434, 23060546..23060574,23061007..23061016)) /locus_tag="TCM_029528" /note="dbxref ricco:29693.m002049; paralog of Thecc1EG029526t3" /codon_start=1 /product="Carbohydrate-binding X8 domain superfamily protein, putative" /protein_id="EOY27759.1" /db_xref="TAIR:AT2G39640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S152" /translation="MDCGGLLKLANGQDKTWCVAKPSSNDTALASNINFACSQLGTLG LSCNMIQQAGICYYPSTLINHASVVMNYYYQALGRHTWNCDFGGSALITISDPSYGSC QYGWEMGVAEVAQWTGRISLLIVIDKTWCVAKPSSNNTALASNIDFACSQLGNLGLSC DMIKEDGICFNPNTLINHASVVMNSYYHAFGRNIWNCDFSGSALITISDPSYGSCQYP " mobile_element complement(23057244..23057348) /note="source:scaffold_4_CACTA_0483 989 1094" /mobile_element_type="transposon:TIR/CACTA" gene 23064620..23069796 /locus_tag="TCM_029529" /note="dbxref CacaoGD:Thecc1EG029529" mRNA join(23064620..23067783,23068313..23069796) /locus_tag="TCM_029529" /product="Leucine-rich receptor-like protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s06420.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s06420.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc873t5" CDS join(23064654..23067783,23068313..23068686) /locus_tag="TCM_029529" /codon_start=1 /product="Leucine-rich receptor-like protein kinase family protein" /protein_id="EOY27760.1" /db_xref="Phytozome:POPTR_0004s06420.1" /db_xref="TAIR:AT5G46330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FL28" /translation="MVSKCVSLIVVVLCSVLVNVLSAEPSLEVEVEALQAFKSSITHE PLGQLADWTEANHHCNWSGIACDPSSSRVISISLVDKQLKGEISPFLGNLSSLQVLDL SSNSFSGHIPPQLGLCSQLSELTLYDNSLSGPIPPEIGNLRNLQSIDLGDNSLNGSIP DSICNCTSLLALGIIFNNLTGTIPKDIGNLVNLQILVAYGNNLQGSIPVSIGMLGDLQ SLDLSENQLSGVIPSQIGNLSSLEYILLFKNSFVGEIPSELGHCRMLMALELYTNKFT GAIPSELGNLIHLQTLRLYENRLNSTIPLSLFQLKSLTHLGLSVNELTGTVPNELGSL SSLEVLTLHSNKLRGEIPSSITNLTNLTYLSMSYNFLTGELPPNIGLLYNLKNLSLEV NLLEGSIPPSIINCTRLLFISLGFNRMTGKIPSGLGQLPNLTILSIGPNRMSGEIPDD LFNCLNLRILSIAENNFSGSLKPVIGKLYNVQVLKASFNSFVGAIPPEIGNLSQLVTL TLAGNGFTGKIPPELSKLHLLQGLSLHDNALEGSLPEKIFELKQLTYLDLQHNKITGS IPDAVSKADFLTYLNLNGNMLNGSIPNSMERLFRLSTLDLSHNHLTGSIPKSVLAGIK GGMQLYLNLSYNFLEGSIPDELGMLEMVQAIDISNNNLSGVIPMTLGGCRNLFSLDLS GNKLSGPILAEVFTQMDMLRSLNLSKNKLDGEIPQNLAKLKHLSSLDLSQNQLKGNIP ESFTNSSSLKHLNLSFNQLEGHVPENGIFKTINSSSLVGNIALCGNKFLRSCSKRSSH RFSRKAVIILTILGSVSVLLILLVAVSILIQRAKKRKPVKLENPEPDFTPALKRFDKM ELQNATNSFSEDNIIGASSLSTVYRGVLEDGQLIAVKKLNLHQFSKESDKSFHREVKN LSHLRHRNLVKVLGYAWESENLKAVILQYMENGSLDSVIHDSVMERIWTLSERIDLWI SVASALDYLHSGYDFPIVHCDLKPSNILLDGDWVAHVSDFGTARMLDVHLQDGSSLSS SSAFEGTIGYMAPEFAYMRNVTTKVDVFSFGIVVMEFLTKRRPTGLMEEEGLPASLRQ LVEKALASGTKGILQVLDPVLASNVSKEQTEALEDLFKLALSCTFPNPEERPNMNEVL SFLLKLKAKHHDTDTQYPREE" gene complement(23067832..23070155) /locus_tag="TCM_029530" /note="dbxref CacaoGD:Thecc1EG029530" mRNA complement(join(23067832..23067853,23068578..23068731, 23068837..23068937,23069055..23069827,23069922..23070066)) /locus_tag="TCM_029530" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29706.m001296" /inference="similar to AA sequence:ricco:29706.m001296" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7122t2" mRNA complement(join(23068297..23068937,23069055..23069827, 23069922..23070066)) /locus_tag="TCM_029530" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29706.m001296" /inference="similar to AA sequence:ricco:29706.m001296" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b028552t1a3; alternateUTRof:Thecc1EG029530t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7122t2" mRNA complement(join(23068368..23068731,23068820..23068937, 23069055..23069827,23069922..23070066)) /locus_tag="TCM_029530" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29706.m001296" /inference="similar to AA sequence:ricco:29706.m001296" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b028552t1a2; alternateUTRof:Thecc1EG029530t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7122t2" mRNA complement(join(23068704..23069827,23069922..23070155)) /locus_tag="TCM_029530" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29706.m001296" /inference="similar to AA sequence:ricco:29706.m001296" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc881t7_C2; alternateUTRof:Thecc1EG029530t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7122t2" CDS complement(join(23069201..23069827,23069922..23069969)) /locus_tag="TCM_029530" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29706.m001296" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27761.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S5S2" /translation="MRPPSLHSSFFSSLKQVEKRLKLETLPDSGPSNSTSSKVPETNL TPTESLGTPLYLQLDQPTNVYTGNTLQDSSEPPQAFLSSSPKFLPIHQTPPQINPPDP PTITNDVEDIEFFMQLLGLSDNQEETQKRRKQEVVACGGNSCGCECGFFEKIVGVKGP KCEKEVKRMGGWIRYFLRNGSEPLRLAFLLMGKAAFEGGDDCDFESLEFPSAIEEFLK IDPPKD" CDS complement(join(23069201..23069827,23069922..23069969)) /locus_tag="TCM_029530" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29706.m001296" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27762.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S5S2" /translation="MRPPSLHSSFFSSLKQVEKRLKLETLPDSGPSNSTSSKVPETNL TPTESLGTPLYLQLDQPTNVYTGNTLQDSSEPPQAFLSSSPKFLPIHQTPPQINPPDP PTITNDVEDIEFFMQLLGLSDNQEETQKRRKQEVVACGGNSCGCECGFFEKIVGVKGP KCEKEVKRMGGWIRYFLRNGSEPLRLAFLLMGKAAFEGGDDCDFESLEFPSAIEEFLK IDPPKD" CDS complement(join(23069201..23069827,23069922..23069969)) /locus_tag="TCM_029530" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29706.m001296" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27763.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S5S2" /translation="MRPPSLHSSFFSSLKQVEKRLKLETLPDSGPSNSTSSKVPETNL TPTESLGTPLYLQLDQPTNVYTGNTLQDSSEPPQAFLSSSPKFLPIHQTPPQINPPDP PTITNDVEDIEFFMQLLGLSDNQEETQKRRKQEVVACGGNSCGCECGFFEKIVGVKGP KCEKEVKRMGGWIRYFLRNGSEPLRLAFLLMGKAAFEGGDDCDFESLEFPSAIEEFLK IDPPKD" CDS complement(join(23069201..23069827,23069922..23069969)) /locus_tag="TCM_029530" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29706.m001296" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27764.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S5S2" /translation="MRPPSLHSSFFSSLKQVEKRLKLETLPDSGPSNSTSSKVPETNL TPTESLGTPLYLQLDQPTNVYTGNTLQDSSEPPQAFLSSSPKFLPIHQTPPQINPPDP PTITNDVEDIEFFMQLLGLSDNQEETQKRRKQEVVACGGNSCGCECGFFEKIVGVKGP KCEKEVKRMGGWIRYFLRNGSEPLRLAFLLMGKAAFEGGDDCDFESLEFPSAIEEFLK IDPPKD" gene complement(23070143..23071354) /locus_tag="TCM_029531" /note="dbxref CacaoGD:Thecc1EG029531" mRNA complement(23070143..23071354) /locus_tag="TCM_029531" /product="Chlorophyll a-b binding protein, chloroplastic" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028204001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029532t1" /inference="similar to AA sequence:ricco:29693.m002051" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage" CDS complement(23070450..23071244) /locus_tag="TCM_029531" /note="dbxref ricco:29693.m002051; paralog of Thecc1EG029532t1" /codon_start=1 /product="Chlorophyll a-b binding protein, chloroplastic" /protein_id="EOY27765.1" /db_xref="TAIR:AT1G29930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P12333" /translation="MAAATMALSSPSFAGKAVKLSPLTPEIQGNGRVSMRKTGTRPPS GSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCR WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIW ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRL AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK" gene complement(23072767..23083025) /locus_tag="TCM_029533" /note="dbxref CacaoGD:Thecc1EG029533" mRNA complement(join(23072767..23074492,23074713..23074788, 23074887..23074948,23075083..23075232,23076143..23076268, 23076912..23077004,23077213..23077284,23077376..23077570, 23077651..23077835,23077914..23077989,23078074..23078196, 23079666..23079717,23079792..23080884,23081051..23081132, 23081781..23082093,23082632..23082968)) /locus_tag="TCM_029533" /product="Starch synthase 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400014590" /inference="similar to AA sequence:Phytozome:GSVIVT01021404001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:PASA:2:TSA:puevd3b028555t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc625t8" gene 23072815..23074002 /locus_tag="TCM_029532" /note="dbxref CacaoGD:Thecc1EG029532" mRNA 23072815..23074002 /locus_tag="TCM_029532" /product="Chlorophyll a-b binding protein, chloroplastic" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028204001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029531t1" /inference="similar to AA sequence:ricco:29693.m002051" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7219t2" CDS 23072866..23073660 /locus_tag="TCM_029532" /note="dbxref ricco:29693.m002051; paralog of Thecc1EG029531t1" /codon_start=1 /product="Chlorophyll a-b binding protein, chloroplastic" /protein_id="EOY27770.1" /db_xref="TAIR:AT1G29930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P12333" /translation="MAAATMALSSPSFAGKALKFSPSTPEIQGSGRVSMRKTGTKPPS GSPWYGPDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCR WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIW ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRL AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK" mRNA complement(join(23073538..23074492,23074713..23074788, 23074887..23074948,23075083..23075232,23076143..23076268, 23076912..23077121,23077213..23077284,23077376..23077570, 23077651..23077835,23077914..23077989,23078074..23078196, 23079666..23079717,23079792..23080884,23081051..23081132, 23081781..23082093,23082632..23083025)) /locus_tag="TCM_029533" /product="Starch synthase 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400014590" /inference="similar to AA sequence:Phytozome:GSVIVT01021404001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc625t12; alternateUTRof:Thecc1EG029533t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc625t8" mRNA complement(join(23073630..23074492,23074713..23074788, 23074887..23074948,23075083..23075232,23076143..23076268, 23076912..23077121,23077213..23077284,23077376..23077570, 23077651..23077835,23077914..23077989,23078074..23078196, 23079666..23079717,23079792..23080884,23081051..23081132, 23081781..23082093,23082632..23083025)) /locus_tag="TCM_029533" /product="Starch synthase 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400014590" /inference="similar to AA sequence:Phytozome:GSVIVT01021404001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc625t14; alternateUTRof:Thecc1EG029533t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc625t8" mRNA complement(join(23073714..23074492,23074713..23074788, 23074887..23074948,23075083..23075232,23076143..23076268, 23076912..23077121,23077213..23077284,23077376..23077570, 23077651..23077835,23077914..23077989,23078074..23078196, 23079666..23079717,23079792..23080884,23081051..23081132, 23081781..23082093,23082632..23082968)) /locus_tag="TCM_029533" /product="Starch synthase 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400014590" /inference="similar to AA sequence:Phytozome:GSVIVT01021404001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc625t8; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc625t8" CDS complement(join(23074313..23074492,23074713..23074788, 23074887..23074948,23075083..23075232,23076143..23076268, 23076912..23077004,23077213..23077284,23077376..23077570, 23077651..23077835,23077914..23077989,23078074..23078196, 23079666..23079717,23079792..23080884,23081051..23081132, 23081781..23082093,23082632..23082807)) /locus_tag="TCM_029533" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Starch synthase 4 isoform 2" /protein_id="EOY27767.1" /db_xref="Phytozome:GSVIVT01021404001" /db_xref="TAIR:AT4G18240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49727" /translation="MSAKLSTCFFNHGFISLNYNNNSKKNVISYKKHVNLRLLFVPSR RLLPASCKMRQKNFSSQNKRPQGKKLPSEQIPTSAKLQPNSDEESEPENSVPNSVDME HIVQNETLYEDDVNTRVDVEYINEQNLGTLSVSAIETNRDVEHTDGQNLDSLTLPAVT KALAINRDGGEQLSGVLLEDLIGMIKNAERNILLLNQARVHALEDLHKILSEKESLQG EINILEMRLAEADARIKVASQEKIHVELLEDQLEKLRNELIHRGGSGKSELELYENQN KISKEEMLLACDRHVHSLSKEVDSLRTENLALKHDIQALKSMLSNVKDTNEHMVTLEN ERSFLESALKELESKLSVSQQDSSNISALKVECKDLWAKVENLQLLLDKATKQADQAI SVLQQNHDLRKKVDKLEESLEDANVFKLSSEKMQHYNELMQQKMKLLEERLQKSDQEI HSYVQLYQESVQEFQETLDSLKEESKKRALDEPVDDMPWEFWSHLLLTIDGWVLEKKI SSSDANLLREFVQKRDRRIHDAFMACKEKNEREVISKFLHLTSSQASPGLYVIHIAAE MAPVAKVGGLGDVVTGLGKALQKKGHLVEIVLPKYDCMQYDRIRDLRALDVTVESYFD GKLFQNKVWVGTVEGLPVYFIEPHHPNKFFWRGQCYGEHDDFKRFSFFSRAALELLLQ AGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLNSARICFTCHNFEYQGSASASELASCG LDVQQLNRPDRMQDNSANDRVNPVKGAIVFSNIVTTVSPTYAQEVRTAEYSANDLQGK AENKAAMRRHLGLSSADDRQPLVGSITRLVPQKGMHLIRHAIYRTLEMGGQFVLLGSS PVAHIQREFEGIANQFQNHDHIRLILKYDESLSHYIYAASDMFIIPSIFEPCGLTQMI AMRYGSVPIARQTGGLKDSVFDVDDDTIPHQFQNGFTFMTPDEQGVNSALERAFNLYK HDKASWQRLVQKDMNIDFSWDSSASQYEELYAKSVARARAAASHT" CDS complement(join(23074313..23074492,23074713..23074788, 23074887..23074948,23075083..23075232,23076143..23076268, 23076912..23077121,23077213..23077284,23077376..23077570, 23077651..23077835,23077914..23077989,23078074..23078196, 23079666..23079717,23079792..23080884,23081051..23081132, 23081781..23082093,23082632..23082807)) /locus_tag="TCM_029533" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Starch synthase 4 isoform 1" /protein_id="EOY27766.1" /db_xref="Phytozome:GSVIVT01021404001" /db_xref="TAIR:AT4G18240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49727" /translation="MSAKLSTCFFNHGFISLNYNNNSKKNVISYKKHVNLRLLFVPSR RLLPASCKMRQKNFSSQNKRPQGKKLPSEQIPTSAKLQPNSDEESEPENSVPNSVDME HIVQNETLYEDDVNTRVDVEYINEQNLGTLSVSAIETNRDVEHTDGQNLDSLTLPAVT KALAINRDGGEQLSGVLLEDLIGMIKNAERNILLLNQARVHALEDLHKILSEKESLQG EINILEMRLAEADARIKVASQEKIHVELLEDQLEKLRNELIHRGGSGKSELELYENQN KISKEEMLLACDRHVHSLSKEVDSLRTENLALKHDIQALKSMLSNVKDTNEHMVTLEN ERSFLESALKELESKLSVSQQDSSNISALKVECKDLWAKVENLQLLLDKATKQADQAI SVLQQNHDLRKKVDKLEESLEDANVFKLSSEKMQHYNELMQQKMKLLEERLQKSDQEI HSYVQLYQESVQEFQETLDSLKEESKKRALDEPVDDMPWEFWSHLLLTIDGWVLEKKI SSSDANLLREFVQKRDRRIHDAFMACKEKNEREVISKFLHLTSSQASPGLYVIHIAAE MAPVAKVGGLGDVVTGLGKALQKKGHLVEIVLPKYDCMQYDRIRDLRALDVTVESYFD GKLFQNKVWVGTVEGLPVYFIEPHHPNKFFWRGQCYGEHDDFKRFSFFSRAALELLLQ AGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLNSARICFTCHNFEYQGSASASELASCG LDVQQLNRPDRMQDNSANDRVNPVKGAIVFSNIVTTVSPTYAQEVRTAEGGRGLHSTL NFHSKKFMGILNGIDTDAWNPATDTFLKVQYSANDLQGKAENKAAMRRHLGLSSADDR QPLVGSITRLVPQKGMHLIRHAIYRTLEMGGQFVLLGSSPVAHIQREFEGIANQFQNH DHIRLILKYDESLSHYIYAASDMFIIPSIFEPCGLTQMIAMRYGSVPIARQTGGLKDS VFDVDDDTIPHQFQNGFTFMTPDEQGVNSALERAFNLYKHDKASWQRLVQKDMNIDFS WDSSASQYEELYAKSVARARAAASHT" CDS complement(join(23074313..23074492,23074713..23074788, 23074887..23074948,23075083..23075232,23076143..23076268, 23076912..23077121,23077213..23077284,23077376..23077570, 23077651..23077835,23077914..23077989,23078074..23078196, 23079666..23079717,23079792..23080884,23081051..23081132, 23081781..23082093,23082632..23082807)) /locus_tag="TCM_029533" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Starch synthase 4 isoform 1" /protein_id="EOY27768.1" /db_xref="Phytozome:GSVIVT01021404001" /db_xref="TAIR:AT4G18240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49727" /translation="MSAKLSTCFFNHGFISLNYNNNSKKNVISYKKHVNLRLLFVPSR RLLPASCKMRQKNFSSQNKRPQGKKLPSEQIPTSAKLQPNSDEESEPENSVPNSVDME HIVQNETLYEDDVNTRVDVEYINEQNLGTLSVSAIETNRDVEHTDGQNLDSLTLPAVT KALAINRDGGEQLSGVLLEDLIGMIKNAERNILLLNQARVHALEDLHKILSEKESLQG EINILEMRLAEADARIKVASQEKIHVELLEDQLEKLRNELIHRGGSGKSELELYENQN KISKEEMLLACDRHVHSLSKEVDSLRTENLALKHDIQALKSMLSNVKDTNEHMVTLEN ERSFLESALKELESKLSVSQQDSSNISALKVECKDLWAKVENLQLLLDKATKQADQAI SVLQQNHDLRKKVDKLEESLEDANVFKLSSEKMQHYNELMQQKMKLLEERLQKSDQEI HSYVQLYQESVQEFQETLDSLKEESKKRALDEPVDDMPWEFWSHLLLTIDGWVLEKKI SSSDANLLREFVQKRDRRIHDAFMACKEKNEREVISKFLHLTSSQASPGLYVIHIAAE MAPVAKVGGLGDVVTGLGKALQKKGHLVEIVLPKYDCMQYDRIRDLRALDVTVESYFD GKLFQNKVWVGTVEGLPVYFIEPHHPNKFFWRGQCYGEHDDFKRFSFFSRAALELLLQ AGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLNSARICFTCHNFEYQGSASASELASCG LDVQQLNRPDRMQDNSANDRVNPVKGAIVFSNIVTTVSPTYAQEVRTAEGGRGLHSTL NFHSKKFMGILNGIDTDAWNPATDTFLKVQYSANDLQGKAENKAAMRRHLGLSSADDR QPLVGSITRLVPQKGMHLIRHAIYRTLEMGGQFVLLGSSPVAHIQREFEGIANQFQNH DHIRLILKYDESLSHYIYAASDMFIIPSIFEPCGLTQMIAMRYGSVPIARQTGGLKDS VFDVDDDTIPHQFQNGFTFMTPDEQGVNSALERAFNLYKHDKASWQRLVQKDMNIDFS WDSSASQYEELYAKSVARARAAASHT" CDS complement(join(23074313..23074492,23074713..23074788, 23074887..23074948,23075083..23075232,23076143..23076268, 23076912..23077121,23077213..23077284,23077376..23077570, 23077651..23077835,23077914..23077989,23078074..23078196, 23079666..23079717,23079792..23080884,23081051..23081132, 23081781..23082093,23082632..23082807)) /locus_tag="TCM_029533" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Starch synthase 4 isoform 1" /protein_id="EOY27769.1" /db_xref="Phytozome:GSVIVT01021404001" /db_xref="TAIR:AT4G18240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49727" /translation="MSAKLSTCFFNHGFISLNYNNNSKKNVISYKKHVNLRLLFVPSR RLLPASCKMRQKNFSSQNKRPQGKKLPSEQIPTSAKLQPNSDEESEPENSVPNSVDME HIVQNETLYEDDVNTRVDVEYINEQNLGTLSVSAIETNRDVEHTDGQNLDSLTLPAVT KALAINRDGGEQLSGVLLEDLIGMIKNAERNILLLNQARVHALEDLHKILSEKESLQG EINILEMRLAEADARIKVASQEKIHVELLEDQLEKLRNELIHRGGSGKSELELYENQN KISKEEMLLACDRHVHSLSKEVDSLRTENLALKHDIQALKSMLSNVKDTNEHMVTLEN ERSFLESALKELESKLSVSQQDSSNISALKVECKDLWAKVENLQLLLDKATKQADQAI SVLQQNHDLRKKVDKLEESLEDANVFKLSSEKMQHYNELMQQKMKLLEERLQKSDQEI HSYVQLYQESVQEFQETLDSLKEESKKRALDEPVDDMPWEFWSHLLLTIDGWVLEKKI SSSDANLLREFVQKRDRRIHDAFMACKEKNEREVISKFLHLTSSQASPGLYVIHIAAE MAPVAKVGGLGDVVTGLGKALQKKGHLVEIVLPKYDCMQYDRIRDLRALDVTVESYFD GKLFQNKVWVGTVEGLPVYFIEPHHPNKFFWRGQCYGEHDDFKRFSFFSRAALELLLQ AGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLNSARICFTCHNFEYQGSASASELASCG LDVQQLNRPDRMQDNSANDRVNPVKGAIVFSNIVTTVSPTYAQEVRTAEGGRGLHSTL NFHSKKFMGILNGIDTDAWNPATDTFLKVQYSANDLQGKAENKAAMRRHLGLSSADDR QPLVGSITRLVPQKGMHLIRHAIYRTLEMGGQFVLLGSSPVAHIQREFEGIANQFQNH DHIRLILKYDESLSHYIYAASDMFIIPSIFEPCGLTQMIAMRYGSVPIARQTGGLKDS VFDVDDDTIPHQFQNGFTFMTPDEQGVNSALERAFNLYKHDKASWQRLVQKDMNIDFS WDSSASQYEELYAKSVARARAAASHT" gene 23084658..23086787 /locus_tag="TCM_029534" /note="dbxref CacaoGD:Thecc1EG029534" mRNA join(23084658..23085177,23085270..23085409, 23085893..23086036,23086177..23086236,23086399..23086787) /locus_tag="TCM_029534" /product="UDP-N-acetylglucosamine transferase subunit ALG14 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30079.m000443" /inference="similar to AA sequence:Phytozome:GSVIVT01021402001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b028556t1a2; alternateUTRof:Thecc1EG029534t1; inference alignment:Newbler:10:TSA:cgbaP2_g00024t00005" mRNA join(23084670..23084716,23084958..23085177, 23085270..23085409,23085893..23086036,23086177..23086236, 23086399..23086752) /locus_tag="TCM_029534" /product="UDP-N-acetylglucosamine transferase subunit ALG14 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30079.m000443" /inference="similar to AA sequence:Phytozome:GSVIVT01021402001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00024t00005; inference alignment:Newbler:10:TSA:cgbaP2_g00024t00005" mRNA join(23084784..23085177,23085270..23085409, 23085893..23086036,23086399..>23086427) /locus_tag="TCM_029534" /product="UDP-N-acetylglucosamine transferase subunit ALG14 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30079.m000443" /inference="similar to AA sequence:Phytozome:GSVIVT01021402001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1155t6_C2; inference alignment:Newbler:10:TSA:cgbaP1_g10434t00001; inference alignment:Newbler:10:TSA:cgbaP2_g00024t00005" CDS join(23084997..23085177,23085270..23085409, 23085893..23086036,23086177..23086236,23086399..23086575) /locus_tag="TCM_029534" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="UDP-N-acetylglucosamine transferase subunit ALG14 isoform 1" /protein_id="EOY27771.1" /db_xref="Phytozome:GSVIVT01021402001" /db_xref="TAIR:AT4G18230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GH86" /translation="MEKNSSCCFSNLSSNLPITCFVTVIAIILVRILYVIWRTCKPLR KRTSQQPLSTLVVLGSGGHTAEMIDLLLVLQKNKFTPRFYIAAATDNMSLQKARVLEN SLADSSGVKEISAEFMQIYRSREVGQSYVTSVWTTLVALAHALWLMIKIRPQVVLCNG PGTCIPLCVIAFIFKVVGIRWSSIFYVESIARVKRLSLSGLLLYKLRIADQFFVQWPQ LQRKYPRAHYVGCLM" CDS join(23084997..23085177,23085270..23085409, 23085893..23086036,23086177..23086236,23086399..23086575) /locus_tag="TCM_029534" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="UDP-N-acetylglucosamine transferase subunit ALG14 isoform 1" /protein_id="EOY27772.1" /db_xref="Phytozome:GSVIVT01021402001" /db_xref="TAIR:AT4G18230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GH86" /translation="MEKNSSCCFSNLSSNLPITCFVTVIAIILVRILYVIWRTCKPLR KRTSQQPLSTLVVLGSGGHTAEMIDLLLVLQKNKFTPRFYIAAATDNMSLQKARVLEN SLADSSGVKEISAEFMQIYRSREVGQSYVTSVWTTLVALAHALWLMIKIRPQVVLCNG PGTCIPLCVIAFIFKVVGIRWSSIFYVESIARVKRLSLSGLLLYKLRIADQFFVQWPQ LQRKYPRAHYVGCLM" CDS join(23084997..23085177,23085270..23085409, 23085893..23086036,23086399..>23086425) /locus_tag="TCM_029534" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="UDP-N-acetylglucosamine transferase subunit ALG14 isoform 3" /protein_id="EOY27773.1" /db_xref="Phytozome:GSVIVT01021402001" /db_xref="TAIR:AT4G18230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84R09" /translation="MEKNSSCCFSNLSSNLPITCFVTVIAIILVRILYVIWRTCKPLR KRTSQQPLSTLVVLGSGGHTAEMIDLLLVLQKNKFTPRFYIAAATDNMSLQKARVLEN SLADSSGVKEISAEFMQIYRSREVGQSYVTSVWTTLVALAHALWLMIKIRPQVVVGIR WSSI" gene complement(23087736..23091118) /locus_tag="TCM_029535" /note="dbxref CacaoGD:Thecc1EG029535" mRNA complement(join(23087736..23089265,23090692..23090950)) /locus_tag="TCM_029535" /product="Purine permease 10 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G18205.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029540t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021400001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6214t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6214t5" mRNA complement(join(23088110..23089265,23090692..23091118)) /locus_tag="TCM_029535" /product="Purine permease 10 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G18205.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029540t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021400001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc181t3; alternateUTRof:Thecc1EG029535t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6214t5" CDS complement(join(23088154..23089265,23090692..23090728)) /locus_tag="TCM_029535" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029540t1" /codon_start=1 /product="Purine permease 10 isoform 1" /protein_id="EOY27774.1" /db_xref="Phytozome:GSVIVT01021400001" /db_xref="TAIR:AT4G18210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMH3" /translation="MGKPQELQLHIIVQEVKEENSPQYLNGKKLTSPEPRNYKWWISI IMYAFFVLFGQSASTLLGRLYYDKGGKSIWVATLAQLAGFPILIPCYCLSPPRSCTTN EQTKQPSALILAIIYFSFGICLAAYSLMYSFGLLYLPVSTFSLICASQLAFTALFSFF LHSQKFTPFIINSLVLLTISSTLLIFQTDPASHAEVSKGKYAIGFICTIGASAGYGLM LSLTQLAFKKLLKRETHAKVFEMVIYQSLIATSVAIVGLFISGEWKNLSVEMEEFRLG KFSYVMTLIETAIASEFFVVGAIGLIFEVSSLFSNAISVLGLPVIPILAVIFFHEKMD PIKVIAMVLAIWGFVSYVYQCYLDNTSSKSEYRSGSEVSKSPLLEEVS" CDS complement(join(23088154..23089265,23090692..23090728)) /locus_tag="TCM_029535" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029540t1" /codon_start=1 /product="Purine permease 10 isoform 1" /protein_id="EOY27775.1" /db_xref="Phytozome:GSVIVT01021400001" /db_xref="TAIR:AT4G18210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMH3" /translation="MGKPQELQLHIIVQEVKEENSPQYLNGKKLTSPEPRNYKWWISI IMYAFFVLFGQSASTLLGRLYYDKGGKSIWVATLAQLAGFPILIPCYCLSPPRSCTTN EQTKQPSALILAIIYFSFGICLAAYSLMYSFGLLYLPVSTFSLICASQLAFTALFSFF LHSQKFTPFIINSLVLLTISSTLLIFQTDPASHAEVSKGKYAIGFICTIGASAGYGLM LSLTQLAFKKLLKRETHAKVFEMVIYQSLIATSVAIVGLFISGEWKNLSVEMEEFRLG KFSYVMTLIETAIASEFFVVGAIGLIFEVSSLFSNAISVLGLPVIPILAVIFFHEKMD PIKVIAMVLAIWGFVSYVYQCYLDNTSSKSEYRSGSEVSKSPLLEEVS" gene 23091305..23093127 /locus_tag="TCM_029536" /note="dbxref CacaoGD:Thecc1EG029536" mRNA join(23091305..23091452,23091755..23091910, 23092764..23093127) /locus_tag="TCM_029536" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1131t7" CDS join(23091404..23091452,23091755..23091910, 23092764..23092804) /locus_tag="TCM_029536" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27776.1" /translation="MLFHFPCLVVKQVGGIASRPSSVFISSLSWSSSSLSTVGLPLAF TRGSAPLSQSLSPVFPSLSAVHSGVKLSLGRRKASTG" mobile_element 23093374..23093850 /note="source:CACAO_on_E732_scaffold_9 3464 3925" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(23093762..23095397) /locus_tag="TCM_029537" /note="dbxref CacaoGD:Thecc1EG029537" mRNA complement(join(23093762..23094906,23095190..23095397)) /locus_tag="TCM_029537" /product="Drug/metabolite transporter superfamily protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT4G18205.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029539t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s34550.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2600t1_C1" CDS complement(23093820..23094767) /locus_tag="TCM_029537" /note="paralog of Thecc1EG029539t1" /codon_start=1 /product="Drug/metabolite transporter superfamily protein, putative" /protein_id="EOY27777.1" /db_xref="Phytozome:POPTR_0001s34550.1" /db_xref="TAIR:AT4G18220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMH3" /translation="MLGRLYFDKGGKSQWMATLMQPVGFPVLILYYCFSPLKNSTATS PNTRKPPTMILVSVYMSLGLLVAAYCFLYSTGLRYLPVSTYSLIFASQLAFNALFSYF LNPQNFTPFIVNSLILLTISSILLASHDASSTPRGVSRGQYVIGFICTVGASAGNGFV LSLTQLCFRKLIQRDTFAVVMDMIIYQSLVATSAILVGLFASGEWKGVKGEMEEYELG KISYVMNLVWISISWQGFAVGVTGLIFEVSSLFGNAVSAFGLPVVPILAVIFFGDRMD CIKVVAMVLAIWGFLSYAYQHYVDDHESNNTFGLRNKEE" gene complement(23096006..23098486) /locus_tag="TCM_029538" /note="dbxref CacaoGD:Thecc1EG029538" mRNA complement(join(23096006..23097124,23097239..23097856, 23098342..23098486)) /locus_tag="TCM_029538" /product="Purine permease 10, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s34550.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029539t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s34550.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(23096730..23097124,23097239..23097856, 23098342..23098378)) /locus_tag="TCM_029538" /note="paralog of Thecc1EG029539t1" /codon_start=1 /product="Purine permease 10, putative" /protein_id="EOY27778.1" /db_xref="Phytozome:POPTR_0001s34550.1" /db_xref="TAIR:AT4G18210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMH3" /translation="MAEIHQIQLDITDQEAKENPTEQTNASNHIRRSPSRNYKRWLLI VVYTIFLLCGQSVALVLGRLYFEKGGSSKWMATLAQLGGFPILLPCYCFLLRKTRTAN NIIDPNPPSFLKLGILVYVPLGLLSAGSCYLYSVGLQYLPVSTVTLITASQLAFNAFF SYFLNSQKFTPFIINSLVLLTSSSVLLVVNNNSEKPAGVSKGEYAAGFICSICGAAIY VLGLFASGDWKGLKRDMEEYALGKVSYVMTLLWTAIGWQVFAIGTVGLIFDVSSLYSI SIRTVGLPIVPVIAVFIFHDKMDGIKGMSMVLAIWGFISYVYQHYLDHRKLKIENRIG SDISEDLSPGEGNQA" gene complement(23100012..23102757) /locus_tag="TCM_029539" /note="dbxref CacaoGD:Thecc1EG029539" mRNA complement(join(23100012..23100243,23100420..23101549, 23102448..23102757)) /locus_tag="TCM_029539" /product="Purine permease 10, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s34540.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029538t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s34550.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6194t1" CDS complement(join(23100441..23101549,23102448..23102484)) /locus_tag="TCM_029539" /note="paralog of Thecc1EG029538t1" /codon_start=1 /product="Purine permease 10, putative" /protein_id="EOY27779.1" /db_xref="Phytozome:POPTR_0001s34550.1" /db_xref="TAIR:AT4G18210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMH3" /translation="MAEAQRLQLPIISDEEEAKEENPAVNVNATNREITVSRSGKYKR WLRVVLYTIFLLCGQSVGTLLGRLYYEKGGNSKWLAALVQLAGFPILLPFYCMPTRKM FNDLNASLTETKQPSFFKLVLVYVSIGLLIAGNCFLYSVGMQYLPVSTITLISASQLA FNAFFSYFLNSQKFTPFIINSLVLLTISSVLLVFQDNSARLAGVSHGQYAAGFICTIF GTAGTGLFLALQQLAFRKVVKRQAFTDVMDMIIFPSLIASSAILVGFLASGDWKGLNR EMKEYELGNFSYVMILLWTAICWAVLAIGAVGLVFEVSALFCNAISVFGLPIVPIIAV FVFHDKMDGIKVISMVLAIWGFISYVYQHYLDDYKSKTEKGKTSGNL" mobile_element complement(23102762..23102951) /note="source:scaffold_4_CACTA_0511 13586 13792" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23102932..23103162 /note="source:CACAO_on_E33_A_scaffold_3 920 1143" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(23102957..23103502) /note="source:scaffold_4_CACTA_0511 12873 13393" /mobile_element_type="transposon:TIR/CACTA" gene complement(23104707..23109307) /locus_tag="TCM_029540" /note="dbxref CacaoGD:Thecc1EG029540" mRNA complement(join(23104707..23106054,23107838..23107864, 23107948..23108005,23108854..23109307)) /locus_tag="TCM_029540" /product="Purine permease 10" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s34550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029535t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s34550.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6210t1" CDS complement(join(23104985..23106054,23107838..23107864, 23107948..23108005,23108854..23108934)) /locus_tag="TCM_029540" /note="paralog of Thecc1EG029535t2" /codon_start=1 /product="Purine permease 10" /protein_id="EOY27780.1" /db_xref="Phytozome:POPTR_0001s34550.1" /db_xref="TAIR:AT4G18210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMH3" /translation="MHTSPCASNRKESSGGKDDGFVRLTVGQFARPFHAAQPIKPRAS IYSPEVQLEIMGQEHTDANSVEQTNYGSSQSSTITRHRSYKWWLQMAIYTIFCLAGQS VATLLGKLYYDKGGNSKWMETFVQPAGFPVLIPIYLLSSAYKTLKEDSTRNIKSPPLL VLAAMYAALGILLAADCLLYSLGLLYLPVSTYSLICASQLAFNALFSFFLNSQKFTPL IINSLVLLTISSTLLVFQNDSSGSTSVSKRKYAIGFVCTVAASAGYGLMLSLTQLCFQ KVLKKQTFKIVLDMIIYQSAVATLIILVGLFASGEWKGLDREMKAFELGKVSYVMVLV WTAITWQVFAIGSVGLIFEVSALFSNVISTLGLPIVPVLAVIFFHETMTGIKAIAMVL AIWGFVSYVYQHYLDDRKS" gene 23108872..23109427 /locus_tag="TCM_029541" /note="dbxref CacaoGD:Thecc1EG029541" mRNA 23108872..23109427 /locus_tag="TCM_029541" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage" CDS 23108993..23109193 /locus_tag="TCM_029541" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27781.1" /translation="MNRSLRDGHGEFSMSNSQFKRLSLTVSIILWLVSGESHEGSSCI ISIIIIIKTVETQLPSDFGYLC" gene complement(23110000..23116197) /locus_tag="TCM_029542" /note="dbxref CacaoGD:Thecc1EG029542" mRNA complement(join(23110000..23110650,23110743..23110901, 23110995..23111091,23111304..23111360,23111490..23111552, 23111696..23111784,23111873..23111959,23112046..23112161, 23112460..23112715,23112821..23112970,23113521..23113679, 23114227..23114299,23114377..23114433,23114521..23114658, 23114782..23114873,23115694..23115760,23115856..23115947)) /locus_tag="TCM_029542" /product="O-acetyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021415t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s34530.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05592t00001" mRNA complement(join(23110177..23110650,23110743..23110901, 23110995..23111088,23112044..23112161,23112460..23112715, 23112821..23112970,23113521..23113679,23114227..23114299, 23114377..23114433,23114521..23114658,23114782..23114873, 23115694..23115760,23115856..23116171)) /locus_tag="TCM_029542" /product="O-acetyltransferase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021415t2" /inference="similar to AA sequence:TAIR:AT2G34410.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc162t11_C2; inference alignment:Newbler:10:TSA:cgbaB_g05592t00001" mRNA complement(join(23110177..23110650,23110743..23111088, 23112044..23112161,23112460..23112715,23112821..23112970, 23113521..23113679,23114227..23114299,23114377..23114433, 23114521..23114658,23114782..23114873,23115694..23115760, 23115856..23116171)) /locus_tag="TCM_029542" /product="O-acetyltransferase family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021415t2" /inference="similar to AA sequence:TAIR:AT2G34410.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc162t6_C2; inference alignment:Newbler:10:TSA:cgbaB_g05592t00001" mRNA complement(join(23110356..23110650,23111304..23111360, 23111490..23111552,23111696..23111784,23111873..23111959, 23112046..23112161,23112460..23112715,23112821..23112970, 23113521..23113679,23114227..23114299,23114377..23114433, 23114521..23114594,23115859..23116197)) /locus_tag="TCM_029542" /product="O-acetyltransferase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021415t2" /inference="similar to AA sequence:Phytozome:POPTR_0011s02780.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc192t7; inference alignment:Newbler:10:TSA:cgbaB_g05592t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc190t7_C1" CDS complement(join(23110503..23110650,23111304..23111360, 23111490..23111552,23111696..23111784,23111873..23111959, 23112046..23112161,23112460..23112715,23112821..23112970, 23113521..23113679,23114227..23114299,23114377..23114433, 23114521..23114525)) /locus_tag="TCM_029542" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021415t2" /codon_start=1 /product="O-acetyltransferase family protein isoform 3" /protein_id="EOY27784.1" /db_xref="Phytozome:POPTR_0011s02780.1" /db_xref="TAIR:AT2G34410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I360" /translation="MRFLTMEDSFLLENRATLRAMAEIGAILVYFYICDRTNLLGEST KKYNRDLFLFLYALLIIVSAMTSLKKHSDKSAFSGKTMQYLSRHQTEEWKGWMQVLFL MYHYFAATEIYNAIRVFIAAYVWMTGFGNFSYYYIRKDFSVARFTQMMWRLNFFVAFC CIVLNNDYMLYYICPMHTLFTLMVYGALGIFSKYNEIPSVMAVKILACFLVVILIWEI PGVFEIFWSPLSFLLGYTDPAKPDLSRLHEWHFRSGLDRYIWIIGMIYAYYHPNVEKW MEKLEECETKRKFSIKASVIAVSLFVGYMWYECIYKLDKVSYNKYHPYTSWIPISVYI CLRNCTQQLRNYTLTLFAWLGKITLETYISQFHIWLRPEKARIRGLDRAFTLDIGKRI YSWSKIRTIRKMSADVAFESSVSNNFE" CDS complement(join(23110645..23110650,23110743..23110901, 23110995..23111091,23111304..23111360,23111490..23111552, 23111696..23111784,23111873..23111959,23112046..23112161, 23112460..23112715,23112821..23112970,23113521..23113679, 23114227..23114299,23114377..23114433,23114521..23114658, 23114782..23114873,23115694..23115726)) /locus_tag="TCM_029542" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021415t2" /codon_start=1 /product="O-acetyltransferase family protein isoform 1" /protein_id="EOY27782.1" /db_xref="Phytozome:POPTR_0001s34530.1" /db_xref="TAIR:AT2G34410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I360" /translation="MVVSGPITPGQVSFLLGVIPVFIAWIYSEFLEYKKSASHSKVHS DNNLVELGEETIKEDDRAVLLEGGLTRSASAKFHSASIKTNLMRFLTMEDSFLLENRA TLRAMAEIGAILVYFYICDRTNLLGESTKKYNRDLFLFLYALLIIVSAMTSLKKHSDK SAFSGKTMQYLSRHQTEEWKGWMQVLFLMYHYFAATEIYNAIRVFIAAYVWMTGFGNF SYYYIRKDFSVARFTQMMWRLNFFVAFCCIVLNNDYMLYYICPMHTLFTLMVYGALGI FSKYNEIPSVMAVKILACFLVVILIWEIPGVFEIFWSPLSFLLGYTDPAKPDLSRLHE WHFRSGLDRYIWIIGMIYAYYHPNVEKWMEKLEECETKRKFSIKASVIAVSLFVGYMW YECIYKLDKVSYNKYHPYTSWIPISVYICLRNCTQQLRNYTLTLFAWLGKITLETYIS QFHIWLRSDIPNGQPKWLLSLVPEYPLLNFMLTTAIYILISHRLFELTNTLKSVFIPT KENRRLLYNFVAGIAISLILYCTALILLQIPHSRA" CDS complement(join(23110645..23110650,23110743..23110901, 23110995..23111088,23112044..23112161,23112460..23112715, 23112821..23112970,23113521..23113679,23114227..23114299, 23114377..23114433,23114521..23114658,23114782..23114873, 23115694..23115726)) /locus_tag="TCM_029542" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG021415t2" /codon_start=1 /product="O-acetyltransferase family protein isoform 4" /protein_id="EOY27785.1" /db_xref="TAIR:AT2G34410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I360" /translation="MVVSGPITPGQVSFLLGVIPVFIAWIYSEFLEYKKSASHSKVHS DNNLVELGEETIKEDDRAVLLEGGLTRSASAKFHSASIKTNLMRFLTMEDSFLLENRA TLRAMAEIGAILVYFYICDRTNLLGESTKKYNRDLFLFLYALLIIVSAMTSLKKHSDK SAFSGKTMQYLSRHQTEEWKGWMQVLFLMYHYFAATEIYNAIRVFIAAYVWMTGFGNF SYYYIRKDFSVARFTQMMWRLNFFVAFCCIVLNNDYMLYYICPMHTLFTLMVYGALGI FSKYNEIPSVMAVKILACFLVVILIWEIPGVFEIFWSPLSFLLGYTDPAKPDLSRLHE WHFRSGLDRYIWIIGMIYAYYHPNVDIPNGQPKWLLSLVPEYPLLNFMLTTAIYILIS HRLFELTNTLKSVFIPTKENRRLLYNFVAGIAISLILYCTALILLQIPHSRA" CDS complement(join(23110645..23110650,23110743..23111088, 23112044..23112161,23112460..23112715,23112821..23112970, 23113521..23113679,23114227..23114299,23114377..23114433, 23114521..23114658,23114782..23114873,23115694..23115726)) /locus_tag="TCM_029542" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG021415t2" /codon_start=1 /product="O-acetyltransferase family protein isoform 5" /protein_id="EOY27786.1" /db_xref="TAIR:AT2G34410.1" /db_xref="TAIR:AT5G46340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I360" /translation="MVVSGPITPGQVSFLLGVIPVFIAWIYSEFLEYKKSASHSKVHS DNNLVELGEETIKEDDRAVLLEGGLTRSASAKFHSASIKTNLMRFLTMEDSFLLENRA TLRAMAEIGAILVYFYICDRTNLLGESTKKYNRDLFLFLYALLIIVSAMTSLKKHSDK SAFSGKTMQYLSRHQTEEWKGWMQVLFLMYHYFAATEIYNAIRVFIAAYVWMTGFGNF SYYYIRKDFSVARFTQMMWRLNFFVAFCCIVLNNDYMLYYICPMHTLFTLMVYGALGI FSKYNEIPSVMAVKILACFLVVILIWEIPGVFEIFWSPLSFLLGYTDPAKPDLSRLHE WHFRSGLDRYIWIIGMIYAYYHPNVDIPNGQPKWLLSLVPEYPLLNFMLTTAIYILVN IFSTLPCSANSFDYIHLFIFLSSCLASLQISHRLFELTNTLKSVFIPTKENRRLLYNF VAGIAISLILYCTALILLQIPHSRA" mRNA complement(join(<23110873..23110901,23110995..23111091, 23111490..23111552,23111696..23111784,23111873..23111959, 23112046..23112161,23112460..23112715,23112821..23112970, 23113521..23113679,23114227..23114299,23114377..23114433, 23114521..23114658,23114782..23114873,23115694..23115760, 23115856..23116167)) /locus_tag="TCM_029542" /product="O-acetyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021415t2" /inference="similar to AA sequence:Phytozome:POPTR_0001s34530.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc190t2_C2; inference alignment:Newbler:10:TSA:cgbaB_g05592t00001" CDS complement(join(<23110875..23110901,23110995..23111091, 23111490..23111552,23111696..23111784,23111873..23111959, 23112046..23112161,23112460..23112715,23112821..23112970, 23113521..23113679,23114227..23114299,23114377..23114433, 23114521..23114658,23114782..23114873,23115694..23115726)) /locus_tag="TCM_029542" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021415t2" /codon_start=1 /product="O-acetyltransferase family protein isoform 2" /protein_id="EOY27783.1" /db_xref="Phytozome:POPTR_0001s34530.1" /db_xref="TAIR:AT2G34410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I360" /translation="MVVSGPITPGQVSFLLGVIPVFIAWIYSEFLEYKKSASHSKVHS DNNLVELGEETIKEDDRAVLLEGGLTRSASAKFHSASIKTNLMRFLTMEDSFLLENRA TLRAMAEIGAILVYFYICDRTNLLGESTKKYNRDLFLFLYALLIIVSAMTSLKKHSDK SAFSGKTMQYLSRHQTEEWKGWMQVLFLMYHYFAATEIYNAIRVFIAAYVWMTGFGNF SYYYIRKDFSVARFTQMMWRLNFFVAFCCIVLNNDYMLYYICPMHTLFTLMVYGALGI FSKYNEIPSVMAVKILACFLVVILIWEIPGVFEIFWSPLSFLLGYTDPAKPDLSRLHE WHFRSGLDRYIWIIGMIYAYYHPNVEKWMEKLEECETKRKFSIKASVIAVSLFVGYMW YECIYKLDKVSYNKYHPYTSWIPISVYICLRNCTQQLRNYTLTLFASDIPNGQPKWLL SLVPEYPLLNFMLTTAIYILISHRLFELT" gene complement(23115925..23128951) /locus_tag="TCM_029543" /note="dbxref CacaoGD:Thecc1EG029543" mRNA complement(join(23115925..23116171,23117566..23117617, 23119880..23120224,23120661..23120804,23120903..23121331, 23128841..23128951)) /locus_tag="TCM_029543" /product="WRKY DNA-binding protein 28" /inference="alignment:exonerate- protein:2:ricco:29693.m002060.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001885t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021397001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc938t1" CDS complement(join(23116001..23116171,23117566..23117617, 23119880..23120224,23120661..23120804,23120903..23121306)) /locus_tag="TCM_029543" /note="paralog of Thecc1EG001885t1" /codon_start=1 /product="WRKY DNA-binding protein 28" /protein_id="EOY27787.1" /db_xref="Phytozome:GSVIVT01021397001" /db_xref="TAIR:AT4G18170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GT28" /translation="MSDHEFRDFYYQAAFHNDQQGVGETGMYRVSSSLQDPSYMSFTD CLHSSMDYGSLEKAFGLSPSSSEVFSSVEGNQTKQVGAGDLGGNTSEVMTTPNSSVSS SSSEAGCEEDSDKSKKDRQPKGSEDGGESSKKGNKAKKKGEKKQREPRFAFMTKSEVD HLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSVVITTYEGQHN HPLPTTLRGSAAGLFPPSMLTPSPLAGPSFPHELFMQMPHHMNNQAGSAGSMFAESFS PFQQYHHQVPDYGLLQDIVPSRLFTDFVQRVALKTNFKEIHVRILTPKTESKIATRKP NPTTAPRQQQPWRERKNKGRAKTTSYRTLFSILQASC" gene complement(23128241..23132877) /locus_tag="TCM_029544" /note="dbxref CacaoGD:Thecc1EG029544" mRNA complement(join(23128241..23128329,23128877..23129455, 23129580..23129838,23131327..23132877)) /locus_tag="TCM_029544" /product="Ca2+ activated outward rectifying K+ channel 6 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29693.m002061" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004935t1" /inference="similar to AA sequence:ricco:29693.m002061" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc705t4" mRNA complement(join(23129053..23129450,23131327..>23132755)) /locus_tag="TCM_029544" /product="Ca2+ activated outward rectifying K+ channel 6 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29693.m002061" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004935t1" /inference="similar to AA sequence:ricco:29693.m002061" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc716t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc705t4" CDS complement(join(23129294..23129450,23131327..>23132753)) /locus_tag="TCM_029544" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29693.m002061; paralog of Thecc1EG004935t1" /codon_start=1 /product="Ca2+ activated outward rectifying K+ channel 6 isoform 2" /protein_id="EOY27789.1" /db_xref="TAIR:AT4G18160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVV6" /translation="LNRIKLWLLCIFHTQIHDDTCKLWICLYGYTSNNFDPFGDNKRK LVRFPVQFFFPLHIRTTLSLSFSPHKPTDIPITASFFWLIRRFHMENDPLLPYVSPIK KITPPPPLFPLPENDEVSVPLPLTPSEFKDRLIFGPSPSSSSSPIEPSPIFDALTSSL NSTKPSSSSSFQENVINLQDPLLQQNQVTSPTTASWLIDPNFKWEKTNLHRSKTAPAM AVLNDVLHPSIPKPQFGSQSVVRQAFILLVLYLSLGVVIYWFNRHNFVAYETHPVVDA LYFCIVTMCTIGYGDITPNSVATKLFSILFVLVGFGFIDILLSGMVSYVLDLQENYLL RTVKPEGEKDSARSYIIDVKKGRMRIRMKVGLALGVVVLCIGIGVGVMHFVESLGWLD SFYLSVMSVTTVGYGDRAFKTLPGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRTM AKWVLGQDMTVAEFLAADIDNNGFVRNWSDNLGQCHLFSNLTHVELDSLLLVGWLEKM DKSADQWYIQFCTIILSIS" CDS complement(join(23129691..23129838,23131327..23132777)) /locus_tag="TCM_029544" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29693.m002061; paralog of Thecc1EG004935t1" /codon_start=1 /product="Ca2+ activated outward rectifying K+ channel 6 isoform 1" /protein_id="EOY27788.1" /db_xref="TAIR:AT4G18160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVV6" /translation="MFRFTSKGLNRIKLWLLCIFHTQIHDDTCKLWICLYGYTSNNFD PFGDNKRKLVRFPVQFFFPLHIRTTLSLSFSPHKPTDIPITASFFWLIRRFHMENDPL LPYVSPIKKITPPPPLFPLPENDEVSVPLPLTPSEFKDRLIFGPSPSSSSSPIEPSPI FDALTSSLNSTKPSSSSSFQENVINLQDPLLQQNQVTSPTTASWLIDPNFKWEKTNLH RSKTAPAMAVLNDVLHPSIPKPQFGSQSVVRQAFILLVLYLSLGVVIYWFNRHNFVAY ETHPVVDALYFCIVTMCTIGYGDITPNSVATKLFSILFVLVGFGFIDILLSGMVSYVL DLQENYLLRTVKPEGEKDSARSYIIDVKKGRMRIRMKVGLALGVVVLCIGIGVGVMHF VESLGWLDSFYLSVMSVTTVGYGDRAFKTLPGRIFAAIWLLVSTLAVARAFLYLAEAR VDKRHRTMAKWVLGQDMTVAEFLAADIDNNGFVSKSEFVIYKLKEMGKVSEKDILQIC EKFDRLDAGNCGKITLADLMESHH" gene complement(23132991..23137226) /locus_tag="TCM_029545" /note="dbxref CacaoGD:Thecc1EG029545" mRNA complement(join(23132991..23133600,23133699..23133770, 23133880..23133971,23134795..23134859,23134966..23135015, 23135112..23135177,23135479..23135704,23136894..23137226)) /locus_tag="TCM_029545" /product="Double-stranded DNA-binding family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021395001" /inference="similar to AA sequence:Phytozome:POPTR_0001s34500.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07811t00001" CDS complement(join(23133562..23133600,23133699..23133770, 23133880..23133971,23134795..23134859,23134966..23135015, 23135112..23135177,23135479..23135704,23136894..23137012)) /locus_tag="TCM_029545" /codon_start=1 /product="Double-stranded DNA-binding family protein" /protein_id="EOY27790.1" /db_xref="Phytozome:POPTR_0001s34500.1" /db_xref="TAIR:AT1G29850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PGX0" /translation="MHILSCFTSKIIGFGELLPSSGICCIVTMTPRKASLLFATPRLK PKNGKIEPPAWGPPSRSEEGLSFRDKDRVPQKLKPAAISNAQNTNHSLSSEEGLNLLF GGGGGDPNTFRSMADPELEAIRQRRMQELMAQHGAGSQQNPDQQKAQEDAKREADERR QMMLSQILSSEARERVARIALVKPEKARGVEDVLLRAAQMGQIVEKVSEERLISMLEQ INTQTTKQTKVTIQRRRSVLDDDD" mobile_element complement(23135806..23135846) /note="source:CACAO_Again_on_E34_scaffold_1 703 1156" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(23135847..23136239) /note="source:CACAO_MITE_S174_scaffold_7 1 407" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(23136489..23136583) /note="source:scaffold_9_CACTA_0936 327 421" /mobile_element_type="transposon:TIR/CACTA" misc_feature complement(23136492..23137226) /locus_tag="TCM_029545" /note="Gene fragment of Thecc1EG029545t1; dbxref gnl|CacaoGD|Thecc1EG029545t1; quality class is mediumpartial-partof is thecc1eg029545t1, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.79 coverage; dbxref CacaoGD:Thecc1EG029547t1" gene 23137330..23140328 /locus_tag="TCM_029548" /note="dbxref CacaoGD:Thecc1EG029548" mRNA join(23137330..23138732,23138890..23139044) /locus_tag="TCM_029548" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g018790.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s34490.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6240t2; alternateUTRof:Thecc1EG029548t1; inference alignment:Newbler:10:TSA:cgbaB_g06452t00001; inference alignment:Newbler:10:TSA:cgbaP2_g08843t00001" mRNA join(23137493..23138732,23139954..23140328) /locus_tag="TCM_029548" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g018790.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s34490.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16494t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16494t1" CDS 23137578..23138699 /locus_tag="TCM_029548" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY27791.1" /db_xref="Phytozome:POPTR_0001s34490.1" /db_xref="TAIR:AT1G29790.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWB7" /translation="MGFTMGLNFLLLLAMVATNILSLYHLSSTVQSPKPPAPDPVPDH LLRQLNTIRATINHLTRHNPSTATTTAKPTSTVPQDLLLHSQIAPIASSCHNHPDLLH KYMTYTPFSICPYDPDLQETLILNGCHPLPRRRCFSKTPSKPSSSLPLNPFPTSLPDS SVIWNKYSCKSFACLLQNNPIGFDLNAQRSSLLKYSSELDLPINQFMQLAKSANSVIR LGIDIGGGTGTFAALMKKFYNVTMLTTTMNVNGPYNEAVALRGLVPLHVPLQQRLPVF DGTMDLVRCGRAVNRWIPVKVMEFMFYDVDRVLRGGGYLWVDRFFSKGVDLEKIYGPL IGKLGYTKVKWAVANKTDSSGLKNGEVYLTALLQKPVSK" CDS 23137578..23138699 /locus_tag="TCM_029548" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY27792.1" /db_xref="Phytozome:POPTR_0001s34490.1" /db_xref="TAIR:AT1G29790.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWB7" /translation="MGFTMGLNFLLLLAMVATNILSLYHLSSTVQSPKPPAPDPVPDH LLRQLNTIRATINHLTRHNPSTATTTAKPTSTVPQDLLLHSQIAPIASSCHNHPDLLH KYMTYTPFSICPYDPDLQETLILNGCHPLPRRRCFSKTPSKPSSSLPLNPFPTSLPDS SVIWNKYSCKSFACLLQNNPIGFDLNAQRSSLLKYSSELDLPINQFMQLAKSANSVIR LGIDIGGGTGTFAALMKKFYNVTMLTTTMNVNGPYNEAVALRGLVPLHVPLQQRLPVF DGTMDLVRCGRAVNRWIPVKVMEFMFYDVDRVLRGGGYLWVDRFFSKGVDLEKIYGPL IGKLGYTKVKWAVANKTDSSGLKNGEVYLTALLQKPVSK" gene complement(23140297..23143580) /locus_tag="TCM_029551" /note="dbxref CacaoGD:Thecc1EG029551" mRNA complement(join(23140297..23141088,23141487..23141555, 23141677..23141800,23141875..23141960,23142783..23142886, 23143281..23143324,23143400..23143580)) /locus_tag="TCM_029551" /product="Pterin-4-alpha-carbinolamine dehydratase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s02840.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s34480.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16491t1" CDS complement(join(23140997..23141088,23141487..23141555, 23141677..23141800,23141875..23141960,23142783..23142886, 23143281..23143324,23143400..23143450)) /locus_tag="TCM_029551" /codon_start=1 /product="Pterin-4-alpha-carbinolamine dehydratase" /protein_id="EOY27793.1" /db_xref="Phytozome:POPTR_0001s34480.1" /db_xref="TAIR:AT1G29810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I112" /translation="MIIRMLRTPLFSFSKPQVPLASYQVLFGPHGRSGTQVTGTLRDS TGISSNRIPVYGFRTFCIGTDKDLLTKKCVPCNSKDLRPMTEESANELISKVDGWSLV NEGGTLKLKRSWKVKSFTKGLELFQLIADIAEAEGHHPDLHLVGWNNVTVDIWTHAVG GLTENDFILAAKINGLDLHHLLRKKVTAG" gene 23143982..23146234 /locus_tag="TCM_029552" /note="dbxref CacaoGD:Thecc1EG029552" mRNA join(23143982..23144164,23144604..23144763, 23145092..23145239,23145350..23145427,23145727..23145811, 23145939..23146234) /locus_tag="TCM_029552" /product="SNARE-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400005507" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016695t1" /inference="similar to AA sequence:frave:gene24896" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16511t1" CDS join(23144162..23144164,23144604..23144763, 23145092..23145239,23145350..23145427,23145727..23145811, 23145939..23145998) /locus_tag="TCM_029552" /note="dbxref frave:gene24896; paralog of Thecc1EG016695t1" /codon_start=1 /product="SNARE-like superfamily protein" /protein_id="EOY27794.1" /db_xref="TAIR:AT1G60970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6Z844" /translation="MELCPSVKNILLLDSEGKRIAVKYYSDDWPTNSAKEAFEKAVFT KTQKTNARTEAEITMFDNYVVVYKFVQDLHFFVTGGENENEIILATVLQGFFDAVGNL LRGTVDKKEALENLDLILLCLDEIVDGGIVLETDANVITGKVASHSIDAGAPLSEQTI SQALATAREHFTRSLLK" gene complement(23146246..23151307) /locus_tag="TCM_029553" /note="dbxref CacaoGD:Thecc1EG029553" mRNA complement(join(23146246..23146957,23147082..23147285, 23147916..23147985,23148085..23148144,23148563..23148654, 23148768..23148956,23149403..23150328,23150927..23151307)) /locus_tag="TCM_029553" /product="Magnesium transporter CorA-like family protein" /inference="alignment:exonerate- protein:2:ricco:29693.m002068" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001880t1" /inference="similar to AA sequence:ricco:29693.m002068" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05654t00001" CDS complement(join(23146571..23146957,23147082..23147285, 23147916..23147985,23148085..23148144,23148563..23148654, 23148768..23148956,23149403..23150107)) /locus_tag="TCM_029553" /note="dbxref ricco:29693.m002068; paralog of Thecc1EG001880t1" /codon_start=1 /product="Magnesium transporter CorA-like family protein" /protein_id="EOY27795.1" /db_xref="TAIR:AT1G29820.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I348" /translation="MSEKEDHSVSQKNKMKMPERHKHIPSRDVVPGSDLWTDGLICAF EFIRGHKKPMNSKYSSRVQSKRLDDESLKVQMPANGLTEGSSPRLDGQKLMKSSSSYE LRDNVAASFDEYRDGPNLQSGQFHAMERFDGSCWVPIGWERISELVKNVQVNAGWASQ QFELMDNEDDLTVAELAAPYWERPAGPIWWCHLAAGHPHVVAWLNNAQWLHPAVSLAL RDESRLISERMKHLLYEVPVRVAGGLLFELLGQSAGDPFVEEDDIPIVLRSWQAQNFL LTVLHIKGTVSSVNVLGITEVQELLAAGGHNVPRTVHEVIAYLACRLTRWDDRLFRKS IFGAADEIELKFMNRRNQEDLNLFGVILNQEIRRLSRQVIRVKWSLHAREEIVFELLQ HLRGNATRTLLDGIRKSTREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNL AVFGGCGLVLTIITGLFGINVDGIPGAQNTPYAFGLFTAILTFIGIVLIVIGLLYLGL KKPVSEEKVQVRMLELQELVKMFQHEAEAHAQVRKSTNRNNLTPTAGDAFLNDADYVL IP" mobile_element complement(23152030..23152448) /note="source:scaffold_2_CACTA_0244 14243 14695" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23152087..23152592 /note="source:scaffold_2_CACTA_0244 12398 12959" /mobile_element_type="transposon:TIR/CACTA" gene complement(23153714..23155157) /locus_tag="TCM_029555" /note="dbxref CacaoGD:Thecc1EG029555" mRNA complement(join(23153714..23153913,23154045..23154613, 23155110..23155157)) /locus_tag="TCM_029555" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS complement(join(23153894..23153913,23154045..23154612)) /locus_tag="TCM_029555" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27796.1" /translation="MPDSRILTDDDDDCSPCNHSLSPPPPPPQPECCKTSFVFRVQIR DLGSITSGDSEPSVVKLVASSLEQVELHSCTSGKHMNRLLEKNEIRGSYRRHKKEIDR RLVSELMKLDFDGCAVANVVVEMDMVPDQLDSLSLSNDIKDERCAICLESLFVDSHLA LPCCHMYHNNCIMEWLYRKQECPLCRRPPFLAAMR" gene 23154927..23162057 /locus_tag="TCM_029556" /note="dbxref CacaoGD:Thecc1EG029556" mRNA join(23154927..23155064,23159308..23159346, 23159727..23160082,23160339..23161110,23161929..23162057) /locus_tag="TCM_029556" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029538t1" /inference="similar to AA sequence:Phytozome:Glyma18g08740.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage" mobile_element complement(23156592..23157817) /note="source:scaffold_10_CACTA_0130 8380 9605" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23157824..23158178) /note="source:scaffold_10_CACTA_0130 6251 6594" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23158738..23158757) /note="source:scaffold_5_CACTA_0608 8792 8827" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23158749..23158806 /note="source:scaffold_9_CACTA_0936 4271 4326" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23158758..23158826) /note="source:CACAO_M_E11054_F12_scaffold_2 8753 8819" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23158827..23158840) /note="source:scaffold_5_CACTA_0608 8762 8791" /mobile_element_type="transposon:TIR/CACTA" CDS join(23159310..23159346,23159727..23160082, 23160339..23160788) /locus_tag="TCM_029556" /note="paralog of Thecc1EG029538t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27797.1" /db_xref="Phytozome:Glyma18g08740.1" /translation="MAEAQQVQLHVMEAKGSNSTRAISHRTESRPRNYMISWLRIALY TIFVLCGQTSATLLTRLYYEKGGSSQWMGTLVMIVGFPVLLPYYYCISQPKVTTPNNA NTKPPSLPMLVFVYVSIGLLAAGNSFLYSLTFRKVLKRQTFRVVMDLIIYQSLVASIA TLIAFFATGDWKGLKREMEGYELGKISYVMILLWTAIAWQIFGVGSVALIFNVSALFC NVISALGLRITPIMAMFVFRGVKGISMVLAIWGFISYLYQHYLDNCRMNAENKIGSTE ASEA" gene complement(23162054..23169576) /locus_tag="TCM_029557" /note="dbxref CacaoGD:Thecc1EG029557" mRNA complement(join(23162054..23162891,23163180..23163638, 23164680..23164844,23165126..23165405,23165485..23165761, 23166387..23167039,23167523..23167649,23167774..23167891, 23168177..23168220,23168856..23169576)) /locus_tag="TCM_029557" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29693.m002069" /inference="similar to AA sequence:Phytozome:POPTR_0001s34440.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16523t1" CDS complement(join(23162604..23162891,23163180..23163638, 23164680..23164844,23165126..23165405,23165485..23165761, 23166387..23167039,23167523..23167649,23167774..23167891, 23168177..23168220,23168856..23169063)) /locus_tag="TCM_029557" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27798.1" /db_xref="Phytozome:POPTR_0001s34440.1" /db_xref="TAIR:AT1G29370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S173" /translation="MSGKGGGGGGGGNNEIGKGNSGISGIPAGSRKMVLSLKEIVNCP EPEIYVMLKECNMDPNEAVNRLLSQDPFHEVKSKRDKKKESKDTVDSRSRGANNLGNR GGRSGPDRYIGRGGSTHYSAYESGPSHGKAAQKRENGTHAYAGSSSSASGMPGNNLNR RPPSHSEAVATEHKMSTVGLGDGISLSSQSSGYQSAWLGVPGQVSMADIVKKGRPQNK ASAMPNPPHQSVNNRHLVVPPLAASHPNLHSPQDHASKVSDVTYEPDVTTNQHVPPSD EWPPIENPSAASVTSVLEAPADSGLYANASNLPLDRTNQHIKSQLEEAPAVDDGPLET LNANHVGSPSISSRNIQEDDSGGSSLFDNNLYKDMNSYQPQRHAFEHDEAEDGASSVA VNLQQLNLHNDDREPPPEEDNPSVIIPNHLQLHTPDCSHLSFGSFGSGIGSTFSAPFA SRSLKNNLDEAPEATDASSIGHSDNRNPEYYGDEHLRNNTEGNIINRSNVSTGNYEAP EDSRPEVLKQDASEAAQVSQYTFPSSAAGYSYENSQQLNPAFTHPQTSSQMQSLTPFS SVMQAYTNSLPSTLLTSTVQTAREPDLPYSPFPVTQSMPTKYSNTASSISGPTISMPE ALRAGSISAAQPTPQTLPGASVATGPALPQHLPMHPFSQPTLPLGHFANMIGYPFLPQ SYTYMPSAFQQAFAGNSTYPQSLAAVLPQYKNSVSVSSLPQSAAVASAYGFGSSTSIP GGLPLNPPTAPTGTTIGYDDVLSSQYKDSNHLMSLQQNENSAMWIHGPGSRTMSAVPA STYYSFQGQNQQAGGFRQGQQPSQHFGALGYPNFYHSQTGVSMDHQQQNPRDGSLSGT QGQPSKQTQQLWQNSY" mobile_element complement(23170427..23170885) /note="source:scaffold_5_CACTA_0607 4006 4465" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23170844..23171238 /note="source:scaffold_9_CACTA_0934 13572 13966" /mobile_element_type="transposon:TIR/CACTA" gene 23171462..23177726 /locus_tag="TCM_029558" /note="dbxref CacaoGD:Thecc1EG029558" mRNA join(23171462..23172080,23172154..23172273, 23172462..23172599,23173188..23173292,23173386..23173554, 23174102..23174178,23174276..23174320,23174560..23174643, 23175018..23175056,23175140..23175202,23175603..23175732, 23176037..23176098,23176206..23176792,23177616..23177726) /locus_tag="TCM_029558" /product="Peptidase S41 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021388001" /inference="similar to AA sequence:Phytozome:GSVIVT01021388001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08503t00001" mRNA join(<23171658..23172080,23172154..23172273, 23172462..23172599,23173188..23173292,23173386..23173554, 23174102..23174178,23174276..23174320,23174560..23174643, 23175603..23175732,23176037..>23176063) /locus_tag="TCM_029558" /product="Peptidase S41 family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021388001" /inference="similar to AA sequence:Phytozome:GSVIVT01021388001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc805t2; inference alignment:Newbler:10:TSA:cgbaB_g08503t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6250t3" CDS join(<23171658..23172080,23172154..23172273, 23172462..23172599,23173188..23173292,23173386..23173554, 23174102..23174178,23174276..23174320,23174560..23174643, 23175603..23175732,23176037..>23176062) /locus_tag="TCM_029558" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Peptidase S41 family protein isoform 2" /protein_id="EOY27800.1" /db_xref="Phytozome:GSVIVT01021388001" /db_xref="TAIR:AT5G46390.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KHG6" /translation="NQRKKMRILLCNSNSPPSLTLLSPTPLQKPPPFLPNAAVWAKKT LITALTGALSLTLLVSSPAPSFSRDSTSFQPTQPPQFSNPLPDRCTEEEQQQEQEEDK VELKPEFVTNEEIVQEAWQIVNDSFLDTRRHRWSPQSWLQKREDILGTSIQTRSKAHE LIKRMLASLGDPYTRFLSPAEFSKMARYDMTGIGINIREVSDDIGGVKLKVQGLILDG PAHTAGVKQGDEVLAVNGENVRGKSAFEVSSLLQGPNETFVTIKVRHGNCGPTESLQV QRQLVARTPVFYRLEQVSNGPTSAGYMRLKEFNALARKDLFIAMKRLQDMGASFFILD LRDNLGGLVEAGIEIAKLFLEEGETIIYTVGRDPQYQKTIVADTAPMVTAPVIGLIQS VFELRDGSGVVVTVGKYVTPNHLDINGNGIEPDYRNFPAWNDVAQHL" CDS join(23171673..23172080,23172154..23172273, 23172462..23172599,23173188..23173292,23173386..23173554, 23174102..23174178,23174276..23174320,23174560..23174643, 23175018..23175056,23175140..23175202,23175603..23175732, 23176037..23176092) /locus_tag="TCM_029558" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Peptidase S41 family protein isoform 1" /protein_id="EOY27799.1" /db_xref="Phytozome:GSVIVT01021388001" /db_xref="TAIR:AT5G46390.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KHG6" /translation="MRILLCNSNSPPSLTLLSPTPLQKPPPFLPNAAVWAKKTLITAL TGALSLTLLVSSPAPSFSRDSTSFQPTQPPQFSNPLPDRCTEEEQQQEQEEDKVELKP EFVTNEEIVQEAWQIVNDSFLDTRRHRWSPQSWLQKREDILGTSIQTRSKAHELIKRM LASLGDPYTRFLSPAEFSKMARYDMTGIGINIREVSDDIGGVKLKVQGLILDGPAHTA GVKQGDEVLAVNGENVRGKSAFEVSSLLQGPNETFVTIKVRHGNCGPTESLQVQRQLV ARTPVFYRLEQVSNGPTSAGYMRLKEFNALARKDLFIAMKRLQDMGASFFILDLRDNL GGLVEAGIEIAKLFLEEGETIIYTVGRDPQYQKTIVADTAPMVTAPVIVLVNNKTASA SEIVASALHDNCRAVLVGERTFGKGLIQSVFELRDGSGVVVTVGKYVTPNHLDINGNG IEPDYRNFPAWNDVAQHLLQCNLLRQG" mRNA join(<23171676..23172080,23172154..23172273, 23172462..23172599,23173188..23173292,23173386..23173554, 23174102..23174179,23176034..23176098,23176206..23176849) /locus_tag="TCM_029558" /product="Peptidase S41 family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021388001" /inference="similar to AA sequence:Phytozome:GSVIVT01021388001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc765t9_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6250t3; inference alignment:Newbler:10:TSA:cgbaB_g08503t00001" CDS join(<23171676..23172080,23172154..23172273, 23172462..23172599,23173188..23173292,23173386..23173554, 23174102..23174179,23176034..23176092) /locus_tag="TCM_029558" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Peptidase S41 family protein isoform 4" /protein_id="EOY27802.1" /db_xref="Phytozome:GSVIVT01021388001" /db_xref="TAIR:AT5G46390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KHG6" /translation="RILLCNSNSPPSLTLLSPTPLQKPPPFLPNAAVWAKKTLITALT GALSLTLLVSSPAPSFSRDSTSFQPTQPPQFSNPLPDRCTEEEQQQEQEEDKVELKPE FVTNEEIVQEAWQIVNDSFLDTRRHRWSPQSWLQKREDILGTSIQTRSKAHELIKRML ASLGDPYTRFLSPAEFSKMARYDMTGIGINIREVSDDIGGVKLKVQGLILDGPAHTAG VKQGDEVLAVNGENVRGKSAFEVSSLLQGPNETFVTIKVRHGNCGPTESLQVQRQLVA RTPVFYRLEQVSNGPTSAGYMRLKEFNALARKDLFIAMKRLQDMGASFFILDLRDNLG GLVEAAWNDVAQHLLQCNLLRQG" mRNA join(<23171689..23172080,23172154..23172273, 23172462..23172599,23173188..23173292,23173386..23173554, 23174102..23174178,23174276..23174303,23175603..23175732, 23176037..23176098,23176206..23176849) /locus_tag="TCM_029558" /product="Peptidase S41 family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021388001" /inference="similar to AA sequence:Phytozome:GSVIVT01021388001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc797t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6250t3; inference alignment:Newbler:10:TSA:cgbaB_g08503t00001" CDS join(<23171691..23172080,23172154..23172273, 23172462..23172599,23173188..23173292,23173386..23173554, 23174102..23174178,23174276..23174303,23175603..23175625) /locus_tag="TCM_029558" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Peptidase S41 family protein isoform 3" /protein_id="EOY27801.1" /db_xref="Phytozome:GSVIVT01021388001" /db_xref="TAIR:AT5G46390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KHG6" /translation="NSNSPPSLTLLSPTPLQKPPPFLPNAAVWAKKTLITALTGALSL TLLVSSPAPSFSRDSTSFQPTQPPQFSNPLPDRCTEEEQQQEQEEDKVELKPEFVTNE EIVQEAWQIVNDSFLDTRRHRWSPQSWLQKREDILGTSIQTRSKAHELIKRMLASLGD PYTRFLSPAEFSKMARYDMTGIGINIREVSDDIGGVKLKVQGLILDGPAHTAGVKQGD EVLAVNGENVRGKSAFEVSSLLQGPNETFVTIKVRHGNCGPTESLQVQRQLVARTPVF YRLEQVSNGPTSAGYMRLKEFNALARKDLFIAMKRLQDMGASFFILDLRDNLGGLVEA GIEIAKLFRSDSICL" gene 23178334..23180739 /locus_tag="TCM_029559" /note="dbxref CacaoGD:Thecc1EG029559" mRNA join(23178334..23178480,23179438..23179971, 23180081..23180120,23180212..23180739) /locus_tag="TCM_029559" /product="Carbohydrate-binding X8 domain superfamily protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G29380.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s34420.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc3756t1" CDS join(23178420..23178480,23179438..23179971, 23180081..23180120,23180212..23180455) /locus_tag="TCM_029559" /codon_start=1 /product="Carbohydrate-binding X8 domain superfamily protein, putative" /protein_id="EOY27803.1" /db_xref="Phytozome:POPTR_0001s34420.1" /db_xref="TAIR:AT1G29380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S175" /translation="MDYSLLQFLAIFLLHIFLCSGSSVSKKPPLEEINQKSKQNNQEF RVLFAPSISTTVLADNIPIVNPTTPGTTTPNPTSPSTEPTTNPTTPTTTPAAPITTPT TPTTTPTTPTTTPATSGGSWCIANQGASPTALQVALDYACGYGGADCSAIQPGGSCYD PNTALNHASYAFNDYYQKHPAPASCVFGGTAQLTNTDPSSGNCHYAASSPTSVTPPAS ITPPATLTPPTTTTMSPPFFMTPPTFTGPGGEGTVYGSAEPTGLPSSATSVSFNFWLI FATIGLAWSFVTANKL" gene complement(23180988..23182776) /locus_tag="TCM_029560" /note="dbxref CacaoGD:Thecc1EG029560" mRNA complement(join(23180988..23181506,23181587..23181656, 23181843..23181907,23182205..23182318,23182407..23182776)) /locus_tag="TCM_029560" /product="Cold regulated 314 thylakoid membrane 2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021385001" /inference="similar to AA sequence:Phytozome:GSVIVT01021385001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b028582t1a3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16498t1" mRNA complement(join(23180988..23181506,23181587..23181656, 23181843..23181907,23182017..23182112,23182205..23182318, 23182407..23182776)) /locus_tag="TCM_029560" /product="Cold regulated 314 thylakoid membrane 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021385001" /inference="similar to AA sequence:Phytozome:GSVIVT01021385001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16498t1" mRNA complement(join(23180988..23181506,23181587..23181656, 23181843..23181907,23182017..23182115,23182205..23182318, 23182407..23182776)) /locus_tag="TCM_029560" /product="Cold regulated 314 thylakoid membrane 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021385001" /inference="similar to AA sequence:Phytozome:GSVIVT01021385001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b028582t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16498t1" CDS complement(join(23181335..23181506,23181587..23181656, 23181843..23181907,23182205..23182318,23182407..23182573)) /locus_tag="TCM_029560" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Cold regulated 314 thylakoid membrane 2 isoform 3" /protein_id="EOY27806.1" /db_xref="Phytozome:GSVIVT01021385001" /db_xref="TAIR:AT1G29390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I1G5" /translation="MVTVSISPAPAAQSLYSRNARNAPFFSLRSGPFQATKKLSTLGH SSTSSISFNPLTFSIKYKEIKKKSKGSRAVCYAAPLSPRNLQWISTISSAGEYGLWAA FLALLVRLFFYIPGELELPFVALLLVIVAPYQAINLRGTQQGAIVALVIAAYLAFQHF SRAGSLQKALDQGSVIATIAIVCITAVSFLFLIAL" CDS complement(join(23181335..23181506,23181587..23181656, 23181843..23181907,23182017..23182112,23182205..23182318, 23182407..23182573)) /locus_tag="TCM_029560" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cold regulated 314 thylakoid membrane 2 isoform 1" /protein_id="EOY27804.1" /db_xref="Phytozome:GSVIVT01021385001" /db_xref="TAIR:AT1G29390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I1G5" /translation="MVTVSISPAPAAQSLYSRNARNAPFFSLRSGPFQATKKLSTLGH SSTSSISFNPLTFSIKYKEIKKKSKGSRAVCYAAPLSPRNLQWISTISSAVLLLAKGT AIQKQFLVPLFAFQAPASIISWMKGEYGLWAAFLALLVRLFFYIPGELELPFVALLLV IVAPYQAINLRGTQQGAIVALVIAAYLAFQHFSRAGSLQKALDQGSVIATIAIVCITA VSFLFLIAL" CDS complement(join(23181335..23181506,23181587..23181656, 23181843..23181907,23182017..23182115,23182205..23182318, 23182407..23182573)) /locus_tag="TCM_029560" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cold regulated 314 thylakoid membrane 2 isoform 2" /protein_id="EOY27805.1" /db_xref="Phytozome:GSVIVT01021385001" /db_xref="TAIR:AT1G29390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I1G5" /translation="MVTVSISPAPAAQSLYSRNARNAPFFSLRSGPFQATKKLSTLGH SSTSSISFNPLTFSIKYKEIKKKSKGSRAVCYAAPLSPRNLQWISTISSARVLLLAKG TAIQKQFLVPLFAFQAPASIISWMKGEYGLWAAFLALLVRLFFYIPGELELPFVALLL VIVAPYQAINLRGTQQGAIVALVIAAYLAFQHFSRAGSLQKALDQGSVIATIAIVCIT AVSFLFLIAL" mobile_element complement(23182984..23183201) /note="source:scaffold_4_CACTA_0505 10643 10864" /mobile_element_type="transposon:TIR/CACTA" gene 23183542..23194241 /locus_tag="TCM_029561" /note="dbxref CacaoGD:Thecc1EG029561" mRNA join(23183542..23184184,23184488..23184585, 23184690..23184919,23185812..23185979,23187479..23187839, 23187913..23188056,23189215..23189367,23189470..23189586, 23190002..23190082,23190327..23190470,23191083..23192894, 23193226..23193264,23193444..23194241) /locus_tag="TCM_029561" /product="Tetratricopeptide repeat-like superfamily protein, PRP39-2,PRP39-2, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021383001" /inference="similar to AA sequence:Phytozome:GSVIVT01021383001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6270t6" CDS join(23184124..23184184,23184488..23184585, 23184690..23184919,23185812..23185979,23187479..23187839, 23187913..23188056,23189215..23189367,23189470..23189586, 23190002..23190082,23190327..23190470,23191083..23192894, 23193226..23193264,23193444..23193536) /locus_tag="TCM_029561" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, PRP39-2,PRP39-2, putative" /protein_id="EOY27807.1" /db_xref="Phytozome:GSVIVT01021383001" /db_xref="TAIR:AT5G46400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJZ3" /translation="MEVQISTTETESHPETGDSLGFDEVKLKEFIAQGKLDFDGWTSL ILDVENSFHDEIEKICLVYDSFLFEFPLCYGYWRKYADHVIRLCTIDKAVEVFERAVQ SATYSVGVWVDYCGFAISVFEDANDIRRLFRRAMSFIGKDYLCHTLWDKYLEFEFSQQ QWSSLANVYIRTLRFPSKKLHRYYEGFQKLAATWKEEMQCLNDLDLESDPKVENEVST CYTDDEISSVIKDLLDPSTGVDGTKALEKYLSIGKQFYQEASQLGEKIHRFETSIRRP YFHVNPLDITQLENWQEYLNFVEMHGDFDWAVKLYERCLIPCANYPEFWMRYVDYVES KGGREIANFALARATQIFLKRMPVIHLFSARFKEKIRDVSGAHVALAEYETESDLSFV ETVSIKANMEKRLGNFVAASNIYKEAVEIAAAKEKFDILPILYIHFSRLQYMITSKSD AARDILIDGIKHVPHSKLLLEELIKFGMMHGGHTHIHVLDAIIDNAISPGLSQGMNAE EAEDVSSLYLQFVDLCGTIDDIRRALNRHIKCFPGSTRMSTYMFSVNGIKPIPLKMTS GRRQESLGALPSHPSGGGSLDVPTQSLSLDKIMKSPENDDTQRNHAALDWVLDKKSPR QENHEIPSDQATVNRLQSEVDESLQEGMQQGSEDVSKQLREDIKANTNLSSPDLIHEV TNEVEALQTSEENSKENDIKQEHDHKSEQDLNQLSLERLSLDHLDHKCSDSIRVANQE GETFVETRLSNGSMVKKEPPQETSMCYGSVPEGGQSNDGHHLVSSPRSAQASDSAGIQ TEMASPSSSASQQNIKKTEPPLRRTPPYGGGSWHQRSKADRVHRENKLGFRRHSHKRL QQRQQVSPQRLCPRSDTGTQVPMSQGYPSQPMSWQSPQVQQGGQTQSQYSTSAAHPNL ITAHGWSMHNMQLQNFVPSQSQVLPQPAHPPPQISQHPMQSNEQLGQMQNNQAYNQMW QYYFYQQQQQHPFLLQQPHNQQPQPQQQQFLLQQPHNQQPQPQQQLLQQQYQQHQQML QVQQQQLPYQHPQLLQLEQQHQFVQHQQQQYLQQQQQLMQEQQLQQQGSYLQQLPPQN HHLFLQQQQQEQEQRQQEEQIATSQVQTLNDSSKEESMMETRVQTRLQGQGTLSHGTD ASKTVSSAASPNSKQRSYSS" mobile_element 23186523..23186627 /note="source:scaffold_10_CACTA_0138 2128 2236" /mobile_element_type="transposon:TIR/CACTA" gene complement(23193912..23202707) /locus_tag="TCM_029562" /note="dbxref CacaoGD:Thecc1EG029562" mRNA complement(join(23193912..23194425,23194537..23194584, 23197240..23197384,23198004..23198341,23199019..23199552, 23200370..23200469,23200612..23200751,23201513..23201775, 23202551..23202707)) /locus_tag="TCM_029562" /product="CTD small phosphatase-like protein 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021382001" /inference="similar to AA sequence:Phytozome:POPTR_0001s34390.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05798t00001" CDS complement(join(23194406..23194425,23194537..23194584, 23197240..23197384,23198004..23198341,23199019..23199552, 23200370..23200469,23200612..23200751,23201513..23201681)) /locus_tag="TCM_029562" /codon_start=1 /product="CTD small phosphatase-like protein 2" /protein_id="EOY27808.1" /db_xref="Phytozome:POPTR_0001s34390.2" /db_xref="TAIR:AT5G46410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9C8" /translation="MPSLRMKAKSSMGSVREKNGLRMCQKSSMICKRPCSHVRVFQQG AEFSTCTQNSHDDSLDLEVASQVVATNEASSQQLILDDDDSELQKQHPVFFDSTTVGR MESAEACASNLETIFSPSLEPIVIHTEPNIDNDAGCNDGPEVPALGADESDDNKSSFG SQTCNVSDFFISDMIIASIPFDANAVDDNISGTNSFPDFKCSEPSMLFDVAEQYMILP FLEDTVKANDINDVNFCEEATMAQDNAGLYVAIDQMRSCIPESDVNSDSDQADDFDPQ SFIKNLPELSDVVSSFRPAMVPKEAWRRKPVTLVLDLDETLVHSTLEHCDNADFTFTV FFNMKEHTVYVKQRPHLQTFLEKVAEMFEVVIFTASQSIYAEQLLDILDPHQKLISRR VYRESCIFSDGSYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIKSWFDDPSDCA LISLLPFLETLVDADDVRPIIAKKFGLMMNITRLSANGKIIVTIRTN" gene 23203964..23212307 /locus_tag="TCM_029563" /note="dbxref CacaoGD:Thecc1EG029563" mRNA join(23203964..23204040,23206335..23208872, 23209722..23210093,23210273..23210529,23211037..23211327, 23211503..23212307) /locus_tag="TCM_029563" /product="Phytochrome E isoform 2" /inference="alignment:exonerate- protein:2:ricco:29693.m002076" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021372t3" /inference="similar to AA sequence:ricco:29693.m002076" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b028585t1a3; alternateUTRof:Thecc1EG029563t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc627t7" mRNA join(23203964..23204040,23206335..23208872, 23209722..23210529,23211037..23211327,23211503..23212260) /locus_tag="TCM_029563" /product="Phytochrome E isoform 1" /inference="alignment:exonerate- protein:2:ricco:29693.m002076" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021372t1" /inference="similar to AA sequence:ricco:29693.m002076" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc627t7" mRNA join(23203964..23204040,23206335..23208872, 23209722..23210093,23210273..23210529,23211037..23211366, 23211503..23212260) /locus_tag="TCM_029563" /product="Phytochrome E isoform 2" /inference="alignment:exonerate- protein:2:ricco:29693.m002076" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021372t3" /inference="similar to AA sequence:ricco:29693.m002076" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b028585t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc627t7" CDS join(23206817..23208872,23209722..23210529, 23211037..23211327,23211503..23211731) /locus_tag="TCM_029563" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29693.m002076; paralog of Thecc1EG021372t1" /codon_start=1 /product="Phytochrome E isoform 1" /protein_id="EOY27809.1" /db_xref="TAIR:AT4G18130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P42498" /translation="MVLESGERAKRPQQQQQPNTALSSSAASNMKPINKGKAIAQYNA DAGLMAEFEQSGVSGKSFNYSRSVIYAPRSVPEEQITAYLSRIQRGGLIQPFGCMIAI EEPTFRIISYSENCFELLGLRLDTEDESKALKGLIGIDARSLFTPASGPSLAKAAASR EISLLNPIWVYSRSTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGAVHSQKLAVR AIARLQSLPGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDDDHGEVVSEIRRSDLEP YLGLHYPAIDIPQAARFLFKQNRVRMICDCHANPVKVIQSDELKQPLCLVNSTLRSPH GCHRQYMANMGSIASLVMAVIINGNDSTKLWGLVVCHHTSPRYVPFPLRYACEFLMQA FGLQLYLELQLASQLAEKKILRTQTLLCDMLLRDAPFGIVTQSPNIMDLVKCDGAALY YNGKCWLLGVTPTESQVKDIAEWLLSTHEDSTGLSTDSLAGAGYPGAALLGDAVCGMA TARITSKDFLFWFRSHTAKEVKWGGAKHHPEDKDDGGRMHPRSSFNAFLEVVKSRSLP WEIPEINAIHSLQLIMRDSFQGMEDSGSKGLVYARQNDTEMQGMGELSSVTYEMVRLI ETATAPIFGVNTAGLINGWNAKIAELTGLQADDAMGRSLVNEVVHEDSHEVIANLLRR ALHGEEDKNVELKLRNFGLNRQNSVVYIVVNACTSRDYTNDVVGVCFVGQDITSEKVV MDKFIRLQGDYRAIIQSLSPLIPPIFASDENACCSEWNAALEKLTGWSRSEVIGKMLP GEIFGELCQLKGQDTLTRFTILLYQGISGQDTEKFPFGFFDRKGKFLEVFLTANKRTD ADGNIIGCFCFLQVIVPDLQQATEGHKQEDKEFFTKLKQLVYMRQEMKNPLNGIRFTH KLLETTAISENQKQFLETSDACERQILAIIEDMDLGSIEDSMELSMEEFLLGNVLDAV ISQVMILLGERNLQLFHEIPEEIKRQSLYGDRIRLQLVLSDFLLSVVHHAPSPDGWVE IRISPGLKLIQDGNEFVRLQFRMTHPGKGLPSTLIQDVFEEGNQPTTQEGLGLNLSRK LLNKMNGHVHYVREHSKCYFLIDLEIRTRKGRQKASQAE" CDS join(23206817..23208872,23209722..23210093, 23210273..23210286) /locus_tag="TCM_029563" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29693.m002076; paralog of Thecc1EG021372t3" /codon_start=1 /product="Phytochrome E isoform 2" /protein_id="EOY27810.1" /db_xref="TAIR:AT4G18130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P42498" /translation="MVLESGERAKRPQQQQQPNTALSSSAASNMKPINKGKAIAQYNA DAGLMAEFEQSGVSGKSFNYSRSVIYAPRSVPEEQITAYLSRIQRGGLIQPFGCMIAI EEPTFRIISYSENCFELLGLRLDTEDESKALKGLIGIDARSLFTPASGPSLAKAAASR EISLLNPIWVYSRSTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGAVHSQKLAVR AIARLQSLPGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDDDHGEVVSEIRRSDLEP YLGLHYPAIDIPQAARFLFKQNRVRMICDCHANPVKVIQSDELKQPLCLVNSTLRSPH GCHRQYMANMGSIASLVMAVIINGNDSTKLWGLVVCHHTSPRYVPFPLRYACEFLMQA FGLQLYLELQLASQLAEKKILRTQTLLCDMLLRDAPFGIVTQSPNIMDLVKCDGAALY YNGKCWLLGVTPTESQVKDIAEWLLSTHEDSTGLSTDSLAGAGYPGAALLGDAVCGMA TARITSKDFLFWFRSHTAKEVKWGGAKHHPEDKDDGGRMHPRSSFNAFLEVVKSRSLP WEIPEINAIHSLQLIMRDSFQGMEDSGSKGLVYARQNDTEMQGMGELSSVTYEMVRLI ETATAPIFGVNTAGLINGWNAKIAELTGLQADDAMGRSLVNEVVHEDSHEVIANLLRR ALHGEEDKNVELKLRNFGLNRQNSVVYIVVNACTSRDYTNDVVGVCFVGQDITSEKVV MDKFIRLQGDYRAIIQSLSPLIPPIFASDENACCSEWNAALEKLTGWSRSEVIGKMLP GEIFGELCQLKGYCA" CDS join(23206817..23208872,23209722..23210093, 23210273..23210286) /locus_tag="TCM_029563" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29693.m002076; paralog of Thecc1EG021372t3" /codon_start=1 /product="Phytochrome E isoform 2" /protein_id="EOY27811.1" /db_xref="TAIR:AT4G18130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P42498" /translation="MVLESGERAKRPQQQQQPNTALSSSAASNMKPINKGKAIAQYNA DAGLMAEFEQSGVSGKSFNYSRSVIYAPRSVPEEQITAYLSRIQRGGLIQPFGCMIAI EEPTFRIISYSENCFELLGLRLDTEDESKALKGLIGIDARSLFTPASGPSLAKAAASR EISLLNPIWVYSRSTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGAVHSQKLAVR AIARLQSLPGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDDDHGEVVSEIRRSDLEP YLGLHYPAIDIPQAARFLFKQNRVRMICDCHANPVKVIQSDELKQPLCLVNSTLRSPH GCHRQYMANMGSIASLVMAVIINGNDSTKLWGLVVCHHTSPRYVPFPLRYACEFLMQA FGLQLYLELQLASQLAEKKILRTQTLLCDMLLRDAPFGIVTQSPNIMDLVKCDGAALY YNGKCWLLGVTPTESQVKDIAEWLLSTHEDSTGLSTDSLAGAGYPGAALLGDAVCGMA TARITSKDFLFWFRSHTAKEVKWGGAKHHPEDKDDGGRMHPRSSFNAFLEVVKSRSLP WEIPEINAIHSLQLIMRDSFQGMEDSGSKGLVYARQNDTEMQGMGELSSVTYEMVRLI ETATAPIFGVNTAGLINGWNAKIAELTGLQADDAMGRSLVNEVVHEDSHEVIANLLRR ALHGEEDKNVELKLRNFGLNRQNSVVYIVVNACTSRDYTNDVVGVCFVGQDITSEKVV MDKFIRLQGDYRAIIQSLSPLIPPIFASDENACCSEWNAALEKLTGWSRSEVIGKMLP GEIFGELCQLKGYCA" gene complement(23212253..23218694) /locus_tag="TCM_029564" /note="dbxref CacaoGD:Thecc1EG029564" mRNA complement(join(23212253..23212984,23213208..23213387, 23213571..23213639,23213728..23213812,23213915..23214869, 23214970..23215061,23215636..23215787,23215885..23216001, 23216106..23216264,23216647..23217116,23217193..23217324, 23217409..23217452,23218275..23218694)) /locus_tag="TCM_029564" /product="RNA-binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:frave:gene24883.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001870t1" /inference="similar to AA sequence:Phytozome:Glyma15g23420.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6285t2" CDS complement(join(23212862..23212984,23213208..23213387, 23213571..23213639,23213728..23213812,23213915..23214869, 23214970..23215061,23215636..23215787,23215885..23216001, 23216106..23216264,23216647..23217116,23217193..23217324, 23217409..23217439)) /locus_tag="TCM_029564" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG001870t1" /codon_start=1 /product="RNA-binding protein, putative isoform 1" /protein_id="EOY27812.1" /db_xref="Phytozome:Glyma15g23420.1" /db_xref="TAIR:AT1G29400.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S181" /translation="MKPSANHLASGPTKVPMANDSKEVKSALSGSDAYHTSSDATLFS SSLPVLPHEKLNLNDTDHTYQSLDDIASGLNNLHQDVEGNDPLGDIEAHALGSLLPDD ENELLAGIMDDFDLSGLPSSLEDLEEYDLFGSGGGMELETDPQESLNIGMSKVSLSDA AVGNGIPHYGLPNGVGTIAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT LYTACKHRGFVMISYYDIRSARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGT LVVFNLDPSVSNEDLRQIFGVYGEVKEIRETPHKRHHKFIEFYDVRAAEQALKSLNRS DIAGKRIKLEPSRPGGARRNLMLQLNQELEQDESRGFRHQIGSPIANSPPGTWAQFNS PIEHSPMHSLSRSPVFRTMSPTTTNQLPGLASILHPQVSNSMKVAPIGKDQGRGSHVE YSFTGTNSTHAAGFQLSHSLPEPKLSQYHGTTSTFGPSNGSSVETLSGPQFLWGNPNS YTDTNSSVWQTSSLGPPFSSNGKGHGFPYSGRQGSFSGSSQHHHHHHHIGSAPSGVPL ERHFGFFPESSDTSFMSSAAFGGMGVGHSDGGFMVNMGSRAAISSGISIPRNVSENGS SSMRMMSSPRLSPVFLGNGPYPGLVPNGMEGLTERGRSRRVENNGNQLDNKKQFQLDL DKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAF INMLSPSHIVPFYEAFNGKKWEKFNSEKVASLAYARIQGKTALVAHFQNSSLMNEDKR CRPILFHSEGPDGGDQSIPEHLHSSLNIIRQPNGSHLGDSSGSLQERDVGEEPETF" mRNA complement(join(23212956..23213387,23213571..23213639, 23213728..23213812,23213915..23214869,23214970..23215061, 23215636..23215787,23215885..23216001,23216106..23216264)) /locus_tag="TCM_029564" /product="MEI2-like protein 5 isoform 3" /inference="alignment:exonerate- protein:2:frave:gene24883.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001870t2" /inference="similar to AA sequence:Phytozome:Glyma15g23420.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc627t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6285t2" CDS complement(join(23213175..23213387,23213571..23213639, 23213728..23213812,23213915..23214869,23214970..23215061, 23215636..23215787,23215885..23216001,23216106..23216210)) /locus_tag="TCM_029564" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG001870t2" /codon_start=1 /product="MEI2-like protein 5 isoform 3" /protein_id="EOY27814.1" /db_xref="Phytozome:Glyma15g23420.1" /db_xref="TAIR:AT1G29400.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H813" /translation="MISYYDIRSARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDIN QGTLVVFNLDPSVSNEDLRQIFGVYGEVKEIRETPHKRHHKFIEFYDVRAAEQALKSL NRSDIAGKRIKLEPSRPGGARRNLMLQLNQELEQDESRGFRHQIGSPIANSPPGTWAQ FNSPIEHSPMHSLSRSPVFRTMSPTTTNQLPGLASILHPQVSNSMKVAPIGKDQGRGS HVEYSFTGTNSTHAAGFQLSHSLPEPKLSQYHGTTSTFGPSNGSSVETLSGPQFLWGN PNSYTDTNSSVWQTSSLGPPFSSNGKGHGFPYSGRQGSFSGSSQHHHHHHHIGSAPSG VPLERHFGFFPESSDTSFMSSAAFGGMGVGHSDGGFMVNMGSRAAISSGISIPRNVSE NGSSSMRMMSSPRLSPVFLGNGPYPGLVPNGMEGLTERGRSRRVENNGNQLDNKKQFQ LDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVG YAFINMLSPSHIVPFYEAFNGKKWEKFNSEKVASLAYARIQGKTALVAHFQNSSLMNE DKRCRPILFHSEGPDGGDQVALVFIILLL" mRNA complement(join(23213364..23213387,23213571..23213639, 23213728..23214869,23214970..23215061,23215636..23215787, 23215885..23216001,23216106..23216264,23216647..23217116, 23217193..23217324,23217409..23217452,23218275..23218571)) /locus_tag="TCM_029564" /product="MEI2-like protein 5 isoform 2" /inference="alignment:exonerate- protein:2:frave:gene24883.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001870t1" /inference="similar to AA sequence:Phytozome:Glyma15g23420.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc627t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6285t2" CDS complement(join(23213911..23214869,23214970..23215061, 23215636..23215787,23215885..23216001,23216106..23216264, 23216647..23217116,23217193..23217324,23217409..23217439)) /locus_tag="TCM_029564" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG001870t1" /codon_start=1 /product="MEI2-like protein 5 isoform 2" /protein_id="EOY27813.1" /db_xref="Phytozome:Glyma15g23420.1" /db_xref="TAIR:AT1G29400.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S181" /translation="MKPSANHLASGPTKVPMANDSKEVKSALSGSDAYHTSSDATLFS SSLPVLPHEKLNLNDTDHTYQSLDDIASGLNNLHQDVEGNDPLGDIEAHALGSLLPDD ENELLAGIMDDFDLSGLPSSLEDLEEYDLFGSGGGMELETDPQESLNIGMSKVSLSDA AVGNGIPHYGLPNGVGTIAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT LYTACKHRGFVMISYYDIRSARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGT LVVFNLDPSVSNEDLRQIFGVYGEVKEIRETPHKRHHKFIEFYDVRAAEQALKSLNRS DIAGKRIKLEPSRPGGARRNLMLQLNQELEQDESRGFRHQIGSPIANSPPGTWAQFNS PIEHSPMHSLSRSPVFRTMSPTTTNQLPGLASILHPQVSNSMKVAPIGKDQGRGSHVE YSFTGTNSTHAAGFQLSHSLPEPKLSQYHGTTSTFGPSNGSSVETLSGPQFLWGNPNS YTDTNSSVWQTSSLGPPFSSNGKGHGFPYSGRQGSFSGSSQHHHHHHHIGSAPSGVPL ERHFGFFPESSDTSFMSSAAFGGMGVGHSDGGFMVNMGSRAAISSGISIPRNVSENGS SSMRMMSSPRLSPVFLGNGPYPGLVPNGMEGLTERGRSRRVENNGNQLDNKKQFQLDL DKIISGEDTRTTLMIKNIPNK" mobile_element 23219076..23219238 /note="source:scaffold_7_CACTA_0795 2861 3030" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23219364..23219473 /note="source:scaffold_9_CACTA_0946 17870 17987" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23219689..23219964 /note="source:CACAO_on_E33_A_scaffold_3 2876 3152" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23219721..23220281 /note="source:CACAO_MITE_S202_scaffold_8 1 598" /mobile_element_type="transposon:TIR/MITE" gene 23220338..23226919 /locus_tag="TCM_029565" /note="dbxref CacaoGD:Thecc1EG029565" mRNA join(23220338..23221042,23221260..23221396, 23221498..23221632,23221771..23221881,23222282..23222563, 23223174..23223373,23223790..23224084,23224293..23224403, 23225126..23225314,23226166..23226919) /locus_tag="TCM_029565" /product="16S rRNA processing protein RimM family, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021378001" /inference="similar to AA sequence:Phytozome:GSVIVT01021378001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04755t00001" mRNA join(23220721..23221042,23221260..23221396, 23221498..23221632,23221771..23221881,23222282..23222563, 23223174..23223373,23223790..23224078,23224297..23224405, 23226300..23226810) /locus_tag="TCM_029565" /product="16S rRNA processing protein RimM family, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021378001" /inference="similar to AA sequence:Phytozome:GSVIVT01021378001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc801t13_C1; inference alignment:Newbler:10:TSA:cgbaB_g04755t00001" mRNA join(23220845..23221042,23221260..23221396, 23221498..23221632,23221771..23221881,23222282..23222563, 23223174..23223373,23223790..23224074,23224293..23224403, 23225126..23225314,23226166..23226799) /locus_tag="TCM_029565" /product="16S rRNA processing protein RimM family, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021378001" /inference="similar to AA sequence:Phytozome:GSVIVT01021378001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6274t1; inference alignment:Newbler:10:TSA:cgbaB_g04755t00001" CDS join(23220850..23221042,23221260..23221396, 23221498..23221632,23221771..23221881,23222282..23222563, 23223174..23223373,23223790..23224084,23224293..23224403, 23225126..23225314,23226166..23226510) /locus_tag="TCM_029565" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="16S rRNA processing protein RimM family, putative isoform 1" /protein_id="EOY27815.1" /db_xref="Phytozome:GSVIVT01021378001" /db_xref="TAIR:AT5G46420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJY9" /translation="MQKASLLCSSNLISSPPTSLYTRLPLTAPFRNRCFRSLSASPRL RLSLNRFHGGRHGLSPLHSTATEEMIEASKNVSGFVEIGFLSSVHGLQGEICIKPRTD FPELRFCKAGRRWLRQQVSGKETIKEVELIEGKEHPGRKSWIIRFSGIETVDQASQLV GSTLLAEEEDRPRLEEGEFYTRDLVGMRVILKETGQVVGTVVNVFNSGASDLLHVMLK SSVLMPNGSGSNSTESGDAGPLVWVPFVEEIVPNVDLTRREMQITPPKGLLELNVRSD ERSKKERRQLEWKERKKHQKRLIAAKKKLCEMEQQHIFHGFRFGEKSETSLLADQILS VNSKLLQQALQNIEIASKRWSITESLTGTMLVRNRLRISEKCFTPCTSEEKLGANFNL QEKALHLVSKGKVALVLDMSDQRNQGKEYDPSLAFSVSMENSETSFLQTLLCNDERFV KVEYRLSVPLVLICPADEINSMEKLFLSNNYFGFDPEKVWFLEEEKLPVVSSLLEQNR HKILMKSPWEILQSPVGSGGVISLLSSNDIAENLARMSVEYIQVCRGERYISGSSLLL GFVNSKEADIGVQVFKDREDIEEGFGMIFSMDIMKKLTRQIHKLQFYAVAKPNSHVEL VEKEWVEVDPSSPNSYEFYSTIFSCLNACSLGKICVTEITK" CDS join(23220850..23221042,23221260..23221396, 23221498..23221632,23221771..23221881,23222282..23222563, 23223174..23223373,23223790..23224078,23224297..23224326) /locus_tag="TCM_029565" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="16S rRNA processing protein RimM family, putative isoform 3" /protein_id="EOY27817.1" /db_xref="Phytozome:GSVIVT01021378001" /db_xref="TAIR:AT5G46420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJY9" /translation="MQKASLLCSSNLISSPPTSLYTRLPLTAPFRNRCFRSLSASPRL RLSLNRFHGGRHGLSPLHSTATEEMIEASKNVSGFVEIGFLSSVHGLQGEICIKPRTD FPELRFCKAGRRWLRQQVSGKETIKEVELIEGKEHPGRKSWIIRFSGIETVDQASQLV GSTLLAEEEDRPRLEEGEFYTRDLVGMRVILKETGQVVGTVVNVFNSGASDLLHVMLK SSVLMPNGSGSNSTESGDAGPLVWVPFVEEIVPNVDLTRREMQITPPKGLLELNVRSD ERSKKERRQLEWKERKKHQKRLIAAKKKLCEMEQQHIFHGFRFGEKSETSLLADQILS VNSKLLQQALQNIEIASKRWSITESLTGTMLVRNRLRISEKCFTPCTSEEKLGANFNL QEKALHLVSKGKVALVLDMSDQRNQGKEYDPSLAFSVSMENSETSFLQTLLCNDERFN IVYQCHWF" CDS join(23220850..23221042,23221260..23221396, 23221498..23221632,23221771..23221881,23222282..23222563, 23223174..23223373,23223790..23224074,23224293..23224296) /locus_tag="TCM_029565" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="16S rRNA processing protein RimM family, putative isoform 2" /protein_id="EOY27816.1" /db_xref="Phytozome:GSVIVT01021378001" /db_xref="TAIR:AT5G46420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJY9" /translation="MQKASLLCSSNLISSPPTSLYTRLPLTAPFRNRCFRSLSASPRL RLSLNRFHGGRHGLSPLHSTATEEMIEASKNVSGFVEIGFLSSVHGLQGEICIKPRTD FPELRFCKAGRRWLRQQVSGKETIKEVELIEGKEHPGRKSWIIRFSGIETVDQASQLV GSTLLAEEEDRPRLEEGEFYTRDLVGMRVILKETGQVVGTVVNVFNSGASDLLHVMLK SSVLMPNGSGSNSTESGDAGPLVWVPFVEEIVPNVDLTRREMQITPPKGLLELNVRSD ERSKKERRQLEWKERKKHQKRLIAAKKKLCEMEQQHIFHGFRFGEKSETSLLADQILS VNSKLLQQALQNIEIASKRWSITESLTGTMLVRNRLRISEKCFTPCTSEEKLGANFNL QEKALHLVSKGKVALVLDMSDQRNQGKEYDPSLAFSVSMENSETSFLQTLLCNDER" gene 23227250..23229371 /locus_tag="TCM_029566" /note="dbxref CacaoGD:Thecc1EG029566" mRNA join(23227250..23227328,23227433..23227562, 23228749..23228930,23229023..23229371) /locus_tag="TCM_029566" /product="Ribosomal protein L32e isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002714t1" /inference="similar to AA sequence:ricco:29070.m000128" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11758t00001; inference alignment:Newbler:10:TSA:cgbaL_g11758t00001" mRNA join(23227298..23227562,23228749..23228930, 23229023..23229321) /locus_tag="TCM_029566" /product="Ribosomal protein L32e isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002714t1" /inference="similar to AA sequence:ricco:29070.m000128" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03909t00002; alternateUTRof:Thecc1EG029566t1; inference alignment:Newbler:10:TSA:cgbaL_g11758t00001" mRNA join(23227438..23227562,23228749..23228930, 23229023..23229315) /locus_tag="TCM_029566" /product="Ribosomal protein L32e isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002714t1" /inference="similar to AA sequence:ricco:29070.m000128" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc3Loc295t1_C2; alternateUTRof:Thecc1EG029566t1; inference alignment:Newbler:10:TSA:cgbaL_g11758t00001" mRNA join(23227445..23227562,23228749..23228930, 23229023..23229315) /locus_tag="TCM_029566" /product="Ribosomal protein L32e isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002714t1" /inference="similar to AA sequence:ricco:29070.m000128" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc186t12_C1; alternateUTRof:Thecc1EG029566t1; inference alignment:Newbler:10:TSA:cgbaL_g11758t00001" CDS join(23227473..23227562,23228749..23228930, 23229023..23229152) /locus_tag="TCM_029566" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29070.m000128; paralog of Thecc1EG002714t1" /codon_start=1 /product="Ribosomal protein L32e isoform 1" /protein_id="EOY27818.1" /db_xref="TAIR:AT4G18100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9G4E7" /translation="MAVPLLSKKIVKKRVKKFKRPQSDRKISVKTNWRRPKGIDSRVR RKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNIKELELLMMHNRTYCAEIAHDVS TRKRKEIVERAAQLDVVVTNKLARLRSQEDE" CDS join(23227473..23227562,23228749..23228930, 23229023..23229152) /locus_tag="TCM_029566" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29070.m000128; paralog of Thecc1EG002714t1" /codon_start=1 /product="Ribosomal protein L32e isoform 1" /protein_id="EOY27819.1" /db_xref="TAIR:AT4G18100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9G4E7" /translation="MAVPLLSKKIVKKRVKKFKRPQSDRKISVKTNWRRPKGIDSRVR RKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNIKELELLMMHNRTYCAEIAHDVS TRKRKEIVERAAQLDVVVTNKLARLRSQEDE" CDS join(23227473..23227562,23228749..23228930, 23229023..23229152) /locus_tag="TCM_029566" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29070.m000128; paralog of Thecc1EG002714t1" /codon_start=1 /product="Ribosomal protein L32e isoform 1" /protein_id="EOY27820.1" /db_xref="TAIR:AT4G18100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9G4E7" /translation="MAVPLLSKKIVKKRVKKFKRPQSDRKISVKTNWRRPKGIDSRVR RKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNIKELELLMMHNRTYCAEIAHDVS TRKRKEIVERAAQLDVVVTNKLARLRSQEDE" CDS join(23227473..23227562,23228749..23228930, 23229023..23229152) /locus_tag="TCM_029566" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29070.m000128; paralog of Thecc1EG002714t1" /codon_start=1 /product="Ribosomal protein L32e isoform 1" /protein_id="EOY27821.1" /db_xref="TAIR:AT4G18100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9G4E7" /translation="MAVPLLSKKIVKKRVKKFKRPQSDRKISVKTNWRRPKGIDSRVR RKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNIKELELLMMHNRTYCAEIAHDVS TRKRKEIVERAAQLDVVVTNKLARLRSQEDE" gene complement(23230609..23232913) /locus_tag="TCM_029567" /note="dbxref CacaoGD:Thecc1EG029567" mRNA complement(23230609..23232913) /locus_tag="TCM_029567" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.73 coverage" CDS complement(23231573..23232676) /locus_tag="TCM_029567" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27822.1" /translation="MASSLTSSASSSSSGIHHTAENEGEEVENKISDLNQQCQGLGHE VSRLILDNVENNEKLMSLKRRIEEFNQGESQLNREIEQLERKVLMLMLEKGLKDDKLE KFGVEEEIEKCEVLKEKKSEQKFLDLTLEIGESDDKFKDMGIGIEEAKKCEKAEVVTE FGTDLIRPQVNPRELVSEKKELAEKFETMGNVIDEVEWSDGDSENEIKEVNVSDDGEG EEEIGEIGARELCKEIELLEVMLERGSFGLLDLKTMMEEVEALKGPEKMMSEMEVKMG ELESGLSELKSAIVELKGKKSKELMGWVTKEEEKELECDGQQGVNARKLNWGSIMASV GAVVLAAAAAVMLFTGRTRKKAAVERGNKQKSG" gene complement(23232991..23235464) /locus_tag="TCM_029568" /note="dbxref CacaoGD:Thecc1EG029568" mRNA complement(23232991..23235464) /locus_tag="TCM_029568" /product="Pentatricopeptide repeat (PPR) superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021374001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012708t3" /inference="similar to AA sequence:Phytozome:GSVIVT01021374001" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc922t1; inference alignment:Newbler:10:TSA:cgbaP2_g15740t00001" CDS complement(23233257..23235410) /locus_tag="TCM_029568" /note="paralog of Thecc1EG012708t3" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein" /protein_id="EOY27823.1" /db_xref="Phytozome:GSVIVT01021374001" /db_xref="TAIR:AT5G46460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHF9" /translation="MNKCNVEISRAFLQKTKYSNTLFAISIFRPFSSTNVKILSQSFT TISSNPKSRTPNCKFLLSDHLKNQSLDEAREVLNKIPFPGVHLYTMMIDGYAQSYRLD DAMALFEKMPVRDTVSWNSMIKGCLHCGDLVTAKKLFDEMPGRNVVSWTTMVNGYLKF GKVEVAERLFFEMPARDVAAWNSMIYGYLKFGRVEEAMSLFRKMPNRNVISWTAMIGG LDYNGRSDEALVFFKKMVGCDVELSSSTFSCVLTACANVIALHLGVQTHGQIVKLGFC FDEFICASLLTFYANCKEMEYACKVFNEKLHGNVVIWTALLTGYGLNHRHESALMVFG DMIRMSVLPNQSSFTSALNSCSGLETLDRGKEIHAVAVKLGLEADAFVGNSLVVMYTV CGNVNDALAAFSSVDEKNIVSWNSIIVGCAQHGQGMWALTLFGRMIHAEVDPDEITFT GLLSACSHSGMLQKGRRFFEYISRYKSTAMKLQHYVCMVDVLGRSGKLEEAEELIKNM QVKANSTVWLALLGACRMHSNLEVAERAAKSILDLEPHCSAAYVLLSNLYASAGRWSD VSRMRVRMKQRGIVKQPGCSWVTVRGVRHEFVSGDKSHPFSEEIYQKLDWLGGKLKEF GYVPDERFALHDVEDEQKQEMLSYHSERLAIAFGLVTTAGGSAITVMKNLRVCGDCHS AIKLIAKIVGREIVVRDSTRFHHFKNGICSCGDYW" gene 23236007..23237072 /locus_tag="TCM_029569" /note="dbxref CacaoGD:Thecc1EG029569" mRNA join(23236007..23236273,23236408..23236627, 23236749..23236794,23236938..23237072) /locus_tag="TCM_029569" /product="AWPM-19-like family protein" /inference="alignment:exonerate-protein:2:frave:gene24880" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020478t1" /inference="similar to AA sequence:Phytozome:Glyma15g23230.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6295t1" CDS join(23236147..23236273,23236408..23236627, 23236749..23236794,23236938..23237015) /locus_tag="TCM_029569" /note="paralog of Thecc1EG020478t1" /codon_start=1 /product="AWPM-19-like family protein" /protein_id="EOY27824.1" /db_xref="Phytozome:Glyma15g23230.1" /db_xref="TAIR:AT5G46530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9D5" /translation="MANLQLKPVATLLLLLNFCMYVIVLGIGGWAMNRAIDHGFIIGP DFNLPAHFSPIYFPMGNAATGFFVTFALLAGVVGVASAIAGLNHVRSWNANSLPSAAS VAGVAWTLTLLAMGFACKEIELEIRNARLRTMEAFLIILTATQLFYIAAIHGSV" mobile_element complement(23237023..23237087) /note="source:scaffold_10_CACTA_0130 1160 1230" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23237045..23237087) /note="source:CACAO_on_SS_E42_scaffold_2 8463 8504" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(23237057..23237108) /note="source:scaffold_5_CACTA_0580 7216 7267" /mobile_element_type="transposon:TIR/CACTA" gene complement(23237600..23241027) /locus_tag="TCM_029570" /note="dbxref CacaoGD:Thecc1EG029570" mRNA complement(join(23237600..23237998,23238944..23239042, 23239146..23239954,23240562..23240725)) /locus_tag="TCM_029570" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g10520.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s02960.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01552t00002; alternateUTRof:Thecc1EG029570t1; inference alignment:Newbler:10:TSA:cgbaP2_g01552t00001" mRNA complement(join(23237600..23237998,23238124..23238214, 23238944..23239042,23239146..23239954,23240562..23240725)) /locus_tag="TCM_029570" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g10520.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s02960.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01552t00001; inference alignment:Newbler:10:TSA:cgbaP2_g01552t00001" mRNA complement(join(23237974..23237998,23238154..23238214, 23238944..23239042,23239146..23239954,23240562..23241027)) /locus_tag="TCM_029570" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g10520.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s02960.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc761t6; alternateUTRof:Thecc1EG029570t1; inference alignment:Newbler:10:TSA:cgbaP2_g01552t00001" mRNA complement(join(<23237975..23237998,23239146..23239954, 23240562..23241027)) /locus_tag="TCM_029570" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g10520.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s34310.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc803t1; inference alignment:Newbler:10:TSA:cgbaP2_g01552t00001" CDS complement(join(<23237975..23237998,23239146..23239954, 23240562..23240655)) /locus_tag="TCM_029570" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY27828.1" /db_xref="Phytozome:POPTR_0001s34310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9D6" /translation="MPSGAKKRKAAKKKKEQAANNINSSTNNNPHGNDDPKSQDERDS DGGDVGSPASQDDQNHQNAFSQGREEGKSAPSSVQSYVTEDKSVEEAARDLESTEKLG LDDVVAVKIDKELEPKEDMESTRVIIQHVEHDKSSSSSSRSSSSSSDDESEASEKKSK EEAFNFVPEATSYNIEDKSATIMSEEVVKVAENEKLGDVDSNSAVETAAVDNLVKTVL SVPEKVDHAVEISLKKSVVSDVVEVGLKESEEKLLPSTNGFSRDELEGNEGKIFPLSS TSTAESSNVAEKIQESGTPDYSEKQNHLFMGIW" mRNA complement(join(23238944..23239954,23240562..23241026)) /locus_tag="TCM_029570" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g10520.1" /inference="similar to AA sequence:Phytozome:POPTR_0001s34310.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc813t7; inference alignment:Newbler:10:TSA:cgbaP2_g01552t00001" CDS complement(join(23238950..23239042,23239146..23239954, 23240562..23240655)) /locus_tag="TCM_029570" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27825.1" /db_xref="Phytozome:POPTR_0011s02960.1" /translation="MPSGAKKRKAAKKKKEQAANNINSSTNNNPHGNDDPKSQDERDS DGGDVGSPASQDDQNHQNAFSQGREEGKSAPSSVQSYVTEDKSVEEAARDLESTEKLG LDDVVAVKIDKELEPKEDMESTRVIIQHVEHDKSSSSSSRSSSSSSDDESEASEKKSK EEAFNFVPEATSYNIEDKSATIMSEEVVKVAENEKLGDVDSNSAVETAAVDNLVKTVL SVPEKVDHAVEISLKKSVVSDVVEVGLKESEEKLLPSTNGFSRDELEGNEGKIFPLSS TSTAESSNVAEKIQESGTPDYSEKQPFVASTPPMVQRTSVLSCCGLFDIFTGSGR" CDS complement(join(23238950..23239042,23239146..23239954, 23240562..23240655)) /locus_tag="TCM_029570" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27826.1" /db_xref="Phytozome:POPTR_0011s02960.1" /translation="MPSGAKKRKAAKKKKEQAANNINSSTNNNPHGNDDPKSQDERDS DGGDVGSPASQDDQNHQNAFSQGREEGKSAPSSVQSYVTEDKSVEEAARDLESTEKLG LDDVVAVKIDKELEPKEDMESTRVIIQHVEHDKSSSSSSRSSSSSSDDESEASEKKSK EEAFNFVPEATSYNIEDKSATIMSEEVVKVAENEKLGDVDSNSAVETAAVDNLVKTVL SVPEKVDHAVEISLKKSVVSDVVEVGLKESEEKLLPSTNGFSRDELEGNEGKIFPLSS TSTAESSNVAEKIQESGTPDYSEKQPFVASTPPMVQRTSVLSCCGLFDIFTGSGR" CDS complement(join(23238950..23239042,23239146..23239954, 23240562..23240655)) /locus_tag="TCM_029570" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY27827.1" /db_xref="Phytozome:POPTR_0011s02960.1" /translation="MPSGAKKRKAAKKKKEQAANNINSSTNNNPHGNDDPKSQDERDS DGGDVGSPASQDDQNHQNAFSQGREEGKSAPSSVQSYVTEDKSVEEAARDLESTEKLG LDDVVAVKIDKELEPKEDMESTRVIIQHVEHDKSSSSSSRSSSSSSDDESEASEKKSK EEAFNFVPEATSYNIEDKSATIMSEEVVKVAENEKLGDVDSNSAVETAAVDNLVKTVL SVPEKVDHAVEISLKKSVVSDVVEVGLKESEEKLLPSTNGFSRDELEGNEGKIFPLSS TSTAESSNVAEKIQESGTPDYSEKQPFVASTPPMVQRTSVLSCCGLFDIFTGSGR" CDS complement(join(23239119..23239954,23240562..23240655)) /locus_tag="TCM_029570" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY27829.1" /db_xref="Phytozome:POPTR_0001s34310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9D6" /translation="MPSGAKKRKAAKKKKEQAANNINSSTNNNPHGNDDPKSQDERDS DGGDVGSPASQDDQNHQNAFSQGREEGKSAPSSVQSYVTEDKSVEEAARDLESTEKLG LDDVVAVKIDKELEPKEDMESTRVIIQHVEHDKSSSSSSRSSSSSSDDESEASEKKSK EEAFNFVPEATSYNIEDKSATIMSEEVVKVAENEKLGDVDSNSAVETAAVDNLVKTVL SVPEKVDHAVEISLKKSVVSDVVEVGLKESEEKLLPSTNGFSRDELEGNEGKIFPLSS TSTAESSNVAEKIQESGTPDYSEKQVFLALILF" mobile_element 23241652..23246932 /note="source:CACAO_M_S_E84671_F88_scaffold_6 1 5281" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23248360..23248776) /note="source:CACAO_on_E454_scaffold_2 1 401" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(23248658..23248794) /note="source:CACAO_Mariner_E11_scaffold_1 981 1118" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(23250712..23262112) /locus_tag="TCM_029573" /note="dbxref CacaoGD:Thecc1EG029573" mRNA complement(join(23250712..23250967,23251956..23252070, 23252517..23252593,23252715..23252870,23253160..23253256, 23253384..23253584,23253680..23253741,23253830..23253923, 23254236..23254281,23254725..23256267,23256401..23256664, 23256753..23257019,23257106..23257334,23257417..23258089, 23258171..23258444,23258674..23259199,23259323..23259561, 23259657..23259878,23260003..23260178,23260744..23260798, 23261655..23262111)) /locus_tag="TCM_029573" /product="P-glycoprotein 9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400005531.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004938t1" /inference="similar to AA sequence:ricco:29693.m002084" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc513t5; alternateUTRof:Thecc1EG029573t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc210t8" mRNA complement(join(23250712..23250967,23251956..23252070, 23252517..23252593,23252715..23252870,23253160..23253256, 23253384..23253584,23253680..23253741,23253830..23253923, 23254236..23254307,23254724..23256267,23256401..23256664, 23256753..23257019,23257106..23257334,23257417..23258089, 23258171..23258444,23258674..23259199,23259323..23259561, 23259657..23259878,23260003..23260178,23260744..23260798, 23261655..23262111)) /locus_tag="TCM_029573" /product="P-glycoprotein 9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400005531.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004938t1" /inference="similar to AA sequence:ricco:29693.m002084" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc513t10; alternateUTRof:Thecc1EG029573t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc210t8" mRNA complement(join(23250712..23250967,23251956..23252070, 23252517..23252593,23252715..23252870,23253160..23253256, 23253384..23253584,23253680..23253923,23254236..23254307, 23254724..23256267,23256401..23256664,23256753..23257019, 23257106..23257334,23257417..23258089,23258171..23258444, 23258674..23259199,23259323..23259561,23259657..23259878, 23260003..23260178,23260744..23260798,23261655..23262111)) /locus_tag="TCM_029573" /product="P-glycoprotein 9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400005531.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004938t1" /inference="similar to AA sequence:ricco:29693.m002084" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc513t2; alternateUTRof:Thecc1EG029573t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc210t8" mRNA complement(join(23250712..23250967,23251956..23252070, 23252517..23252593,23252715..23252870,23253160..23253256, 23253384..23253584,23253680..23253741,23253830..23253923, 23254236..23254278,23254718..23256267,23256401..23256664, 23256753..23257019,23257106..23257334,23257417..23258089, 23258171..23258444,23258674..23259199,23259323..23259561, 23259657..23259878,23260003..23260178,23260744..23260798, 23261655..23262111)) /locus_tag="TCM_029573" /product="P-glycoprotein 9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400005531.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004938t1" /inference="similar to AA sequence:ricco:29693.m002084" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc513t1; alternateUTRof:Thecc1EG029573t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc210t8" gene 23250724..23255306 /locus_tag="TCM_029572" /note="dbxref CacaoGD:Thecc1EG029572" mRNA join(23250724..23251004,23251954..23252076, 23252523..23252592,23252714..23252868,23253158..23253259, 23253386..23253583,23253679..23253741,23253830..23253919, 23254231..23254305,23254722..23255306) /locus_tag="TCM_029572" /product="SH3 domain-containing protein" /inference="alignment:exonerate-protein:2:frave:gene24862" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006797t1" /inference="similar to AA sequence:TAIR:AT4G18060.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03017t00001" CDS join(23250906..23251004,23251954..23252076, 23252523..23252592,23252714..23252868,23253158..23253259, 23253386..23253583,23253679..23253741,23253830..23253919, 23254231..23254305,23254722..23254841) /locus_tag="TCM_029572" /note="paralog of Thecc1EG006797t1" /codon_start=1 /product="SH3 domain-containing protein" /protein_id="EOY27837.1" /db_xref="TAIR:AT4G18060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S187" /translation="MDALRKQASKLREQVAKQQQAISSLPFSFFLFKAVIKQFSGTGY ESSDVVVIDEIEMQRHQQLDKLYRSTRSGRDFQKDVIKAAEAFTAIGYKHIETGTKFS EECCQYGTENSENINENILAKAAAIYGDGRKHVEKEQEDLIKLLSQQVLDPLRAMFTG APLEDARHLAQRYSRMRQEAEALAAEVSRRQARIREVPLPENVAKLHAAEARMQELKA NMAVLGKEAAAALAAVEAQQQRLTLQRLVAMAGGEKTYHLRVAAILNEIEAEMVSEKQ RKESAPPVIAPENGTEKTMYYLAEVMHPFFAASEKELSLAVGDFVVVRKVSPSGWSEG ECKGKAGWFPSAYVEKRQRLPSNDQAGEVY" mRNA complement(join(23253230..23253259,23253349..23253584, 23253680..23253741,23253830..23253923,23254235..23254307, 23254724..23256267,23256401..23256664,23256753..23257019, 23257106..23257334,23257417..23258089,23258171..23258444, 23258674..23259199,23259323..23259561,23259657..23259878, 23260003..23260178,23260744..23260798,23261655..23262112)) /locus_tag="TCM_029573" /product="P-glycoprotein 9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400005531.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004938t1" /inference="similar to AA sequence:ricco:29693.m002084" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc210t12; alternateUTRof:Thecc1EG029573t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc210t8" mRNA complement(join(23253235..23253280,23253808..23254307, 23254724..23256267,23256401..23256664,23256753..23257019, 23257106..23257334,23257417..23258089,23258171..23258444, 23258674..23259199,23259323..23259561,23259657..23259878, 23260003..23260178,23260744..23260798,23261655..23262111)) /locus_tag="TCM_029573" /product="P-glycoprotein 9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400005531.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004938t1" /inference="similar to AA sequence:ricco:29693.m002084" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc513t8; alternateUTRof:Thecc1EG029573t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc210t8" mRNA complement(join(23254235..23256267,23256401..23256664, 23256753..23257019,23257106..23257334,23257417..23258089, 23258171..23258444,23258674..23259199,23259323..23259561, 23259657..23259878,23260003..23260178,23260744..23260798, 23261655..23261951,23262086..23262112)) /locus_tag="TCM_029573" /product="P-glycoprotein 9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400005531.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004938t1" /inference="similar to AA sequence:ricco:29693.m002084" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc210t8; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc210t8" CDS complement(join(23255623..23256267,23256401..23256664, 23256753..23257019,23257106..23257334,23257417..23258089, 23258171..23258444,23258674..23259199,23259323..23259561, 23259657..23259878,23260003..23260178,23260744..23260798, 23261655..23261903)) /locus_tag="TCM_029573" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29693.m002084; paralog of Thecc1EG004938t1" /codon_start=1 /product="P-glycoprotein 9 isoform 1" /protein_id="EOY27830.1" /db_xref="TAIR:AT4G18050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M0M2" /translation="MKEMADDDKGNKKDKNKKADDQKVPFYKLFTFADRLDIVLIIVG TIAAIANGLTQPIMTLIFGQLINSFGATTPSNVVKEVSKIAVKFLYLGIYACVASLLQ VVCWMVTGERQAARIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEK VGKFIQLVATFIGGFIIAFAKGWQLALVLSACIPLVAFAGGIMAMIMAKMSSRGQLAY AEAGNVVEQTIGAIRTVASFTGEKQAIEKYNSKLQVAYTATTHQGLVSGVGLGTMLVV VFSSYGLAVWYGSKLIADHGYNGGQVINVIIAIMTGGMSLGQTTPSLNAFASGQAAAY KMFETIKRKPTIDAYDTSGITLEDIEGEINLKDVYFRYPARPDVQIFSGFTLHVPSGT TAALVGQSGSGKSTVISLVERFYDPDSGEVLIDGVDLKKMQLRWIRGKIGLVSQEPIL FATSIRENIAYGKENATYEEIRTAIELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQ RIAIARAILKNPKILLLDEATSALDAESERVVQEALVKVMSNRTTVVVAHRLTTIRNA DIIAVVHQGKLVEKGTHEELIRDPEGAYSQLVRLQEGAKETEDARAKDVEKSDATSEI DKAITRSASTSLSLSLRRSISRNSSSSRHSFTYNFGVPGPINFCETEEGSVEPGLTDE FSVQRRKNVSIRRLASLNKPEVPAILIGCIAAAVHGVIFPLFGLFFSSAIKSFFEPAK QLLKDAREWALWYVGMGVVILVVGPVQNYLFGVAGGKLIQRIRSLTFEKVVHQEISWF DDPANSSGAVGARLSTDASTVRNLVGDTLALIVQNMSTIAAGLIIAFSANWRLALAIL AVSPFMLLQGYLQMKFLKGFSGDAKLMYEEASQVANDAVGSIRTVASFCSEQKVMDLY QEKCKGPMKQGVRLGLVSGLGFGFSFLALYCTNAFCFYIGAVLVKHGKATFGEVFKVF FALTISAIGVSQTSALAPDTNKAKDSAASIFEILDRKPEIDSSSTAGTTLPSVTGNIE LEHVSFRYPTRPDIQIFRDMCLSIPSGKTVALVGESGSGKSTVISLIERFYDPDSGRV TLDGMDLRKIRLSWLRQQMGLVSQEPILFNETIRTNLAYGKQGNATEEEIMAATKAAN AHNFISSLPQGYDTSVGERGVQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESE RVVQEALDRVMVNRTTVVVAHRLTTIKGADIIAVVKNGVVAEKGRHEALMKITDGAYA SLVALHMSAT" CDS complement(join(23255623..23256267,23256401..23256664, 23256753..23257019,23257106..23257334,23257417..23258089, 23258171..23258444,23258674..23259199,23259323..23259561, 23259657..23259878,23260003..23260178,23260744..23260798, 23261655..23261903)) /locus_tag="TCM_029573" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29693.m002084; paralog of Thecc1EG004938t1" /codon_start=1 /product="P-glycoprotein 9 isoform 1" /protein_id="EOY27831.1" /db_xref="TAIR:AT4G18050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M0M2" /translation="MKEMADDDKGNKKDKNKKADDQKVPFYKLFTFADRLDIVLIIVG TIAAIANGLTQPIMTLIFGQLINSFGATTPSNVVKEVSKIAVKFLYLGIYACVASLLQ VVCWMVTGERQAARIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEK VGKFIQLVATFIGGFIIAFAKGWQLALVLSACIPLVAFAGGIMAMIMAKMSSRGQLAY AEAGNVVEQTIGAIRTVASFTGEKQAIEKYNSKLQVAYTATTHQGLVSGVGLGTMLVV VFSSYGLAVWYGSKLIADHGYNGGQVINVIIAIMTGGMSLGQTTPSLNAFASGQAAAY KMFETIKRKPTIDAYDTSGITLEDIEGEINLKDVYFRYPARPDVQIFSGFTLHVPSGT TAALVGQSGSGKSTVISLVERFYDPDSGEVLIDGVDLKKMQLRWIRGKIGLVSQEPIL FATSIRENIAYGKENATYEEIRTAIELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQ RIAIARAILKNPKILLLDEATSALDAESERVVQEALVKVMSNRTTVVVAHRLTTIRNA DIIAVVHQGKLVEKGTHEELIRDPEGAYSQLVRLQEGAKETEDARAKDVEKSDATSEI DKAITRSASTSLSLSLRRSISRNSSSSRHSFTYNFGVPGPINFCETEEGSVEPGLTDE FSVQRRKNVSIRRLASLNKPEVPAILIGCIAAAVHGVIFPLFGLFFSSAIKSFFEPAK QLLKDAREWALWYVGMGVVILVVGPVQNYLFGVAGGKLIQRIRSLTFEKVVHQEISWF DDPANSSGAVGARLSTDASTVRNLVGDTLALIVQNMSTIAAGLIIAFSANWRLALAIL AVSPFMLLQGYLQMKFLKGFSGDAKLMYEEASQVANDAVGSIRTVASFCSEQKVMDLY QEKCKGPMKQGVRLGLVSGLGFGFSFLALYCTNAFCFYIGAVLVKHGKATFGEVFKVF FALTISAIGVSQTSALAPDTNKAKDSAASIFEILDRKPEIDSSSTAGTTLPSVTGNIE LEHVSFRYPTRPDIQIFRDMCLSIPSGKTVALVGESGSGKSTVISLIERFYDPDSGRV TLDGMDLRKIRLSWLRQQMGLVSQEPILFNETIRTNLAYGKQGNATEEEIMAATKAAN AHNFISSLPQGYDTSVGERGVQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESE RVVQEALDRVMVNRTTVVVAHRLTTIKGADIIAVVKNGVVAEKGRHEALMKITDGAYA SLVALHMSAT" CDS complement(join(23255623..23256267,23256401..23256664, 23256753..23257019,23257106..23257334,23257417..23258089, 23258171..23258444,23258674..23259199,23259323..23259561, 23259657..23259878,23260003..23260178,23260744..23260798, 23261655..23261903)) /locus_tag="TCM_029573" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29693.m002084; paralog of Thecc1EG004938t1" /codon_start=1 /product="P-glycoprotein 9 isoform 1" /protein_id="EOY27832.1" /db_xref="TAIR:AT4G18050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M0M2" /translation="MKEMADDDKGNKKDKNKKADDQKVPFYKLFTFADRLDIVLIIVG TIAAIANGLTQPIMTLIFGQLINSFGATTPSNVVKEVSKIAVKFLYLGIYACVASLLQ VVCWMVTGERQAARIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEK VGKFIQLVATFIGGFIIAFAKGWQLALVLSACIPLVAFAGGIMAMIMAKMSSRGQLAY AEAGNVVEQTIGAIRTVASFTGEKQAIEKYNSKLQVAYTATTHQGLVSGVGLGTMLVV VFSSYGLAVWYGSKLIADHGYNGGQVINVIIAIMTGGMSLGQTTPSLNAFASGQAAAY KMFETIKRKPTIDAYDTSGITLEDIEGEINLKDVYFRYPARPDVQIFSGFTLHVPSGT TAALVGQSGSGKSTVISLVERFYDPDSGEVLIDGVDLKKMQLRWIRGKIGLVSQEPIL FATSIRENIAYGKENATYEEIRTAIELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQ RIAIARAILKNPKILLLDEATSALDAESERVVQEALVKVMSNRTTVVVAHRLTTIRNA DIIAVVHQGKLVEKGTHEELIRDPEGAYSQLVRLQEGAKETEDARAKDVEKSDATSEI DKAITRSASTSLSLSLRRSISRNSSSSRHSFTYNFGVPGPINFCETEEGSVEPGLTDE FSVQRRKNVSIRRLASLNKPEVPAILIGCIAAAVHGVIFPLFGLFFSSAIKSFFEPAK QLLKDAREWALWYVGMGVVILVVGPVQNYLFGVAGGKLIQRIRSLTFEKVVHQEISWF DDPANSSGAVGARLSTDASTVRNLVGDTLALIVQNMSTIAAGLIIAFSANWRLALAIL AVSPFMLLQGYLQMKFLKGFSGDAKLMYEEASQVANDAVGSIRTVASFCSEQKVMDLY QEKCKGPMKQGVRLGLVSGLGFGFSFLALYCTNAFCFYIGAVLVKHGKATFGEVFKVF FALTISAIGVSQTSALAPDTNKAKDSAASIFEILDRKPEIDSSSTAGTTLPSVTGNIE LEHVSFRYPTRPDIQIFRDMCLSIPSGKTVALVGESGSGKSTVISLIERFYDPDSGRV TLDGMDLRKIRLSWLRQQMGLVSQEPILFNETIRTNLAYGKQGNATEEEIMAATKAAN AHNFISSLPQGYDTSVGERGVQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESE RVVQEALDRVMVNRTTVVVAHRLTTIKGADIIAVVKNGVVAEKGRHEALMKITDGAYA SLVALHMSAT" CDS complement(join(23255623..23256267,23256401..23256664, 23256753..23257019,23257106..23257334,23257417..23258089, 23258171..23258444,23258674..23259199,23259323..23259561, 23259657..23259878,23260003..23260178,23260744..23260798, 23261655..23261903)) /locus_tag="TCM_029573" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29693.m002084; paralog of Thecc1EG004938t1" /codon_start=1 /product="P-glycoprotein 9 isoform 1" /protein_id="EOY27833.1" /db_xref="TAIR:AT4G18050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M0M2" /translation="MKEMADDDKGNKKDKNKKADDQKVPFYKLFTFADRLDIVLIIVG TIAAIANGLTQPIMTLIFGQLINSFGATTPSNVVKEVSKIAVKFLYLGIYACVASLLQ VVCWMVTGERQAARIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEK VGKFIQLVATFIGGFIIAFAKGWQLALVLSACIPLVAFAGGIMAMIMAKMSSRGQLAY AEAGNVVEQTIGAIRTVASFTGEKQAIEKYNSKLQVAYTATTHQGLVSGVGLGTMLVV VFSSYGLAVWYGSKLIADHGYNGGQVINVIIAIMTGGMSLGQTTPSLNAFASGQAAAY KMFETIKRKPTIDAYDTSGITLEDIEGEINLKDVYFRYPARPDVQIFSGFTLHVPSGT TAALVGQSGSGKSTVISLVERFYDPDSGEVLIDGVDLKKMQLRWIRGKIGLVSQEPIL FATSIRENIAYGKENATYEEIRTAIELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQ RIAIARAILKNPKILLLDEATSALDAESERVVQEALVKVMSNRTTVVVAHRLTTIRNA DIIAVVHQGKLVEKGTHEELIRDPEGAYSQLVRLQEGAKETEDARAKDVEKSDATSEI DKAITRSASTSLSLSLRRSISRNSSSSRHSFTYNFGVPGPINFCETEEGSVEPGLTDE FSVQRRKNVSIRRLASLNKPEVPAILIGCIAAAVHGVIFPLFGLFFSSAIKSFFEPAK QLLKDAREWALWYVGMGVVILVVGPVQNYLFGVAGGKLIQRIRSLTFEKVVHQEISWF DDPANSSGAVGARLSTDASTVRNLVGDTLALIVQNMSTIAAGLIIAFSANWRLALAIL AVSPFMLLQGYLQMKFLKGFSGDAKLMYEEASQVANDAVGSIRTVASFCSEQKVMDLY QEKCKGPMKQGVRLGLVSGLGFGFSFLALYCTNAFCFYIGAVLVKHGKATFGEVFKVF FALTISAIGVSQTSALAPDTNKAKDSAASIFEILDRKPEIDSSSTAGTTLPSVTGNIE LEHVSFRYPTRPDIQIFRDMCLSIPSGKTVALVGESGSGKSTVISLIERFYDPDSGRV TLDGMDLRKIRLSWLRQQMGLVSQEPILFNETIRTNLAYGKQGNATEEEIMAATKAAN AHNFISSLPQGYDTSVGERGVQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESE RVVQEALDRVMVNRTTVVVAHRLTTIKGADIIAVVKNGVVAEKGRHEALMKITDGAYA SLVALHMSAT" CDS complement(join(23255623..23256267,23256401..23256664, 23256753..23257019,23257106..23257334,23257417..23258089, 23258171..23258444,23258674..23259199,23259323..23259561, 23259657..23259878,23260003..23260178,23260744..23260798, 23261655..23261903)) /locus_tag="TCM_029573" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29693.m002084; paralog of Thecc1EG004938t1" /codon_start=1 /product="P-glycoprotein 9 isoform 1" /protein_id="EOY27834.1" /db_xref="TAIR:AT4G18050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M0M2" /translation="MKEMADDDKGNKKDKNKKADDQKVPFYKLFTFADRLDIVLIIVG TIAAIANGLTQPIMTLIFGQLINSFGATTPSNVVKEVSKIAVKFLYLGIYACVASLLQ VVCWMVTGERQAARIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEK VGKFIQLVATFIGGFIIAFAKGWQLALVLSACIPLVAFAGGIMAMIMAKMSSRGQLAY AEAGNVVEQTIGAIRTVASFTGEKQAIEKYNSKLQVAYTATTHQGLVSGVGLGTMLVV VFSSYGLAVWYGSKLIADHGYNGGQVINVIIAIMTGGMSLGQTTPSLNAFASGQAAAY KMFETIKRKPTIDAYDTSGITLEDIEGEINLKDVYFRYPARPDVQIFSGFTLHVPSGT TAALVGQSGSGKSTVISLVERFYDPDSGEVLIDGVDLKKMQLRWIRGKIGLVSQEPIL FATSIRENIAYGKENATYEEIRTAIELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQ RIAIARAILKNPKILLLDEATSALDAESERVVQEALVKVMSNRTTVVVAHRLTTIRNA DIIAVVHQGKLVEKGTHEELIRDPEGAYSQLVRLQEGAKETEDARAKDVEKSDATSEI DKAITRSASTSLSLSLRRSISRNSSSSRHSFTYNFGVPGPINFCETEEGSVEPGLTDE FSVQRRKNVSIRRLASLNKPEVPAILIGCIAAAVHGVIFPLFGLFFSSAIKSFFEPAK QLLKDAREWALWYVGMGVVILVVGPVQNYLFGVAGGKLIQRIRSLTFEKVVHQEISWF DDPANSSGAVGARLSTDASTVRNLVGDTLALIVQNMSTIAAGLIIAFSANWRLALAIL AVSPFMLLQGYLQMKFLKGFSGDAKLMYEEASQVANDAVGSIRTVASFCSEQKVMDLY QEKCKGPMKQGVRLGLVSGLGFGFSFLALYCTNAFCFYIGAVLVKHGKATFGEVFKVF FALTISAIGVSQTSALAPDTNKAKDSAASIFEILDRKPEIDSSSTAGTTLPSVTGNIE LEHVSFRYPTRPDIQIFRDMCLSIPSGKTVALVGESGSGKSTVISLIERFYDPDSGRV TLDGMDLRKIRLSWLRQQMGLVSQEPILFNETIRTNLAYGKQGNATEEEIMAATKAAN AHNFISSLPQGYDTSVGERGVQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESE RVVQEALDRVMVNRTTVVVAHRLTTIKGADIIAVVKNGVVAEKGRHEALMKITDGAYA SLVALHMSAT" CDS complement(join(23255623..23256267,23256401..23256664, 23256753..23257019,23257106..23257334,23257417..23258089, 23258171..23258444,23258674..23259199,23259323..23259561, 23259657..23259878,23260003..23260178,23260744..23260798, 23261655..23261903)) /locus_tag="TCM_029573" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29693.m002084; paralog of Thecc1EG004938t1" /codon_start=1 /product="P-glycoprotein 9 isoform 1" /protein_id="EOY27835.1" /db_xref="TAIR:AT4G18050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M0M2" /translation="MKEMADDDKGNKKDKNKKADDQKVPFYKLFTFADRLDIVLIIVG TIAAIANGLTQPIMTLIFGQLINSFGATTPSNVVKEVSKIAVKFLYLGIYACVASLLQ VVCWMVTGERQAARIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEK VGKFIQLVATFIGGFIIAFAKGWQLALVLSACIPLVAFAGGIMAMIMAKMSSRGQLAY AEAGNVVEQTIGAIRTVASFTGEKQAIEKYNSKLQVAYTATTHQGLVSGVGLGTMLVV VFSSYGLAVWYGSKLIADHGYNGGQVINVIIAIMTGGMSLGQTTPSLNAFASGQAAAY KMFETIKRKPTIDAYDTSGITLEDIEGEINLKDVYFRYPARPDVQIFSGFTLHVPSGT TAALVGQSGSGKSTVISLVERFYDPDSGEVLIDGVDLKKMQLRWIRGKIGLVSQEPIL FATSIRENIAYGKENATYEEIRTAIELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQ RIAIARAILKNPKILLLDEATSALDAESERVVQEALVKVMSNRTTVVVAHRLTTIRNA DIIAVVHQGKLVEKGTHEELIRDPEGAYSQLVRLQEGAKETEDARAKDVEKSDATSEI DKAITRSASTSLSLSLRRSISRNSSSSRHSFTYNFGVPGPINFCETEEGSVEPGLTDE FSVQRRKNVSIRRLASLNKPEVPAILIGCIAAAVHGVIFPLFGLFFSSAIKSFFEPAK QLLKDAREWALWYVGMGVVILVVGPVQNYLFGVAGGKLIQRIRSLTFEKVVHQEISWF DDPANSSGAVGARLSTDASTVRNLVGDTLALIVQNMSTIAAGLIIAFSANWRLALAIL AVSPFMLLQGYLQMKFLKGFSGDAKLMYEEASQVANDAVGSIRTVASFCSEQKVMDLY QEKCKGPMKQGVRLGLVSGLGFGFSFLALYCTNAFCFYIGAVLVKHGKATFGEVFKVF FALTISAIGVSQTSALAPDTNKAKDSAASIFEILDRKPEIDSSSTAGTTLPSVTGNIE LEHVSFRYPTRPDIQIFRDMCLSIPSGKTVALVGESGSGKSTVISLIERFYDPDSGRV TLDGMDLRKIRLSWLRQQMGLVSQEPILFNETIRTNLAYGKQGNATEEEIMAATKAAN AHNFISSLPQGYDTSVGERGVQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESE RVVQEALDRVMVNRTTVVVAHRLTTIKGADIIAVVKNGVVAEKGRHEALMKITDGAYA SLVALHMSAT" CDS complement(join(23255623..23256267,23256401..23256664, 23256753..23257019,23257106..23257334,23257417..23258089, 23258171..23258444,23258674..23259199,23259323..23259561, 23259657..23259878,23260003..23260178,23260744..23260798, 23261655..23261903)) /locus_tag="TCM_029573" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:29693.m002084; paralog of Thecc1EG004938t1" /codon_start=1 /product="P-glycoprotein 9 isoform 1" /protein_id="EOY27836.1" /db_xref="TAIR:AT4G18050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M0M2" /translation="MKEMADDDKGNKKDKNKKADDQKVPFYKLFTFADRLDIVLIIVG TIAAIANGLTQPIMTLIFGQLINSFGATTPSNVVKEVSKIAVKFLYLGIYACVASLLQ VVCWMVTGERQAARIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEK VGKFIQLVATFIGGFIIAFAKGWQLALVLSACIPLVAFAGGIMAMIMAKMSSRGQLAY AEAGNVVEQTIGAIRTVASFTGEKQAIEKYNSKLQVAYTATTHQGLVSGVGLGTMLVV VFSSYGLAVWYGSKLIADHGYNGGQVINVIIAIMTGGMSLGQTTPSLNAFASGQAAAY KMFETIKRKPTIDAYDTSGITLEDIEGEINLKDVYFRYPARPDVQIFSGFTLHVPSGT TAALVGQSGSGKSTVISLVERFYDPDSGEVLIDGVDLKKMQLRWIRGKIGLVSQEPIL FATSIRENIAYGKENATYEEIRTAIELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQ RIAIARAILKNPKILLLDEATSALDAESERVVQEALVKVMSNRTTVVVAHRLTTIRNA DIIAVVHQGKLVEKGTHEELIRDPEGAYSQLVRLQEGAKETEDARAKDVEKSDATSEI DKAITRSASTSLSLSLRRSISRNSSSSRHSFTYNFGVPGPINFCETEEGSVEPGLTDE FSVQRRKNVSIRRLASLNKPEVPAILIGCIAAAVHGVIFPLFGLFFSSAIKSFFEPAK QLLKDAREWALWYVGMGVVILVVGPVQNYLFGVAGGKLIQRIRSLTFEKVVHQEISWF DDPANSSGAVGARLSTDASTVRNLVGDTLALIVQNMSTIAAGLIIAFSANWRLALAIL AVSPFMLLQGYLQMKFLKGFSGDAKLMYEEASQVANDAVGSIRTVASFCSEQKVMDLY QEKCKGPMKQGVRLGLVSGLGFGFSFLALYCTNAFCFYIGAVLVKHGKATFGEVFKVF FALTISAIGVSQTSALAPDTNKAKDSAASIFEILDRKPEIDSSSTAGTTLPSVTGNIE LEHVSFRYPTRPDIQIFRDMCLSIPSGKTVALVGESGSGKSTVISLIERFYDPDSGRV TLDGMDLRKIRLSWLRQQMGLVSQEPILFNETIRTNLAYGKQGNATEEEIMAATKAAN AHNFISSLPQGYDTSVGERGVQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESE RVVQEALDRVMVNRTTVVVAHRLTTIKGADIIAVVKNGVVAEKGRHEALMKITDGAYA SLVALHMSAT" mobile_element 23263135..23263550 /note="source:CACAO_MITE110_scaffold_6 1 416" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(23266677..23266821) /note="source:scaffold_6_CACTA_0709 1725 1868" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23267471..23267983) /note="source:scaffold_4_CACTA_0490 9754 10274" /mobile_element_type="transposon:TIR/CACTA" gene 23268748..23272141 /locus_tag="TCM_029574" /note="dbxref CacaoGD:Thecc1EG029574" mRNA join(23268748..23268997,23269537..23269629, 23269696..23269757,23270014..23270161,23270455..23270538, 23271450..23271565,23271870..23272141) /locus_tag="TCM_029574" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16521t1" CDS join(23268877..23268997,23269537..23269629, 23269696..23269757,23270014..23270161,23270455..23270538, 23271450..23271565,23271870..23271920) /locus_tag="TCM_029574" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27838.1" /translation="MCSATMSQAAHSGPGAFLMLLHFTGTLFLPRRYFFSFSLLEVTM RFFPIHDYLVCLVYGEESSVSGTYILKEVTMRFFQFMTIWFALSMEKKIEVSSAVGWT VWIEGPDIHVLFRFDFSHVNIVQFMLISDIYFPCNFCHLGLFPANFFWKRQGRGWGYG EVDGDLGRLSPEMMQPMPAGWILLYSDISCKRLAFVTYCWKSWIDIHEVKDILFYVNA EGATRT" gene complement(23272105..23274300) /locus_tag="TCM_029575" /note="dbxref CacaoGD:Thecc1EG029575" mRNA complement(join(23272105..23272670,23272781..23273105, 23273272..23273519,23273851..23274300)) /locus_tag="TCM_029575" /product="Senescence-related gene 1" /inference="alignment:exonerate-protein:2:frave:gene24866" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038224t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021355001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00158t00001" CDS complement(join(23272395..23272670,23272781..23273105, 23273272..23273519,23273851..23274108)) /locus_tag="TCM_029575" /note="paralog of Thecc1EG038224t1" /codon_start=1 /product="Senescence-related gene 1" /protein_id="EOY27839.1" /db_xref="Phytozome:GSVIVT01021355001" /db_xref="TAIR:AT1G17020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39224" /translation="METQPPKLGASLLVPCVQELAKEHLIEVPSRYLRSTDEDPAPFL SNANSSLLQVPVIDMQKLSSKHLKDSESEKLHHACKEWGFFQLINHGVSAALVENVKL GIQEFFNLPMEEKKKFWQKPDEIEGFGQAFVVSEEQKLDWGDMFYMVTLPTHLRKPHL FPNLPLPLRETLELYSSDLKILAMKMLDLMAKALRMDPNDMRTLFEEGFQGMRMNYYP PCPQPDCAIGLNSHSDAGGLTILLQITEVEGLQIRKDGTWIPVKPLPNAFVINIGDIV EIVSNGIYRSIEHRATVNQEKERLSVATFYSPKLDGDLGPAPSLITPETPALFRRTGV VDYIKGFYSHELRGKSYVDVYRVENLKNDSSPIS" mobile_element 23274428..23275570 /note="source:INTACT639F_F363_scaffold_5-int 7466 8565" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23276432..23277397 /note="source:INTACT639F_F363_scaffold_5-int 7467 8565" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23277039..23277436) /note="source:CACAO_on_E683_scaffold_9 1181 1548" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23277387..23277481 /note="source:scaffold_8_CACTA_0858 14199 14296" /mobile_element_type="transposon:TIR/CACTA" gene complement(23279721..23285673) /locus_tag="TCM_029576" /note="dbxref CacaoGD:Thecc1EG029576" mRNA complement(join(23279721..23280606,23280821..23281142, 23282215..23282462,23282585..23282839,23285605..23285673)) /locus_tag="TCM_029576" /product="Senescence-related gene 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g19690.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038224t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021355001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02342t00001" mobile_element complement(23280031..23280161) /note="source:scaffold_7_CACTA_0795 3328 3460" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(23280358..23280606,23280821..23281142, 23282215..23282462,23282585..23282839)) /locus_tag="TCM_029576" /note="paralog of Thecc1EG038224t1" /codon_start=1 /product="Senescence-related gene 1, putative" /protein_id="EOY27840.1" /db_xref="Phytozome:GSVIVT01021355001" /db_xref="TAIR:AT1G17020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39224" /translation="MESELTKLGSSIPVPSVQEVAKEALGRVPQRYQRPDQDPPFTSI DTCSPQQVPVIDMLKLLSGDHFMDVELEKLHYACKEWGFFQLINHGVSKSLVDKVKKG IQGLFNLPMEEKKKLWQREGDLEGFGQAFVVSEEQKLDWGDMFFMTALPTHLRKPYLF PNLPLPFRDDIEAYSAELRDLALKILAFQAKALGMDPNDLSIFEEGWQAFRMNYYPPC PQPELAIGLSPHSDAVGITILLQINEMEGLQIRKDGAWVPIKPLPDAFVVNIGDIMEL VTNGIYGSIEHRATVNSEKERLSIATFYCPKLDGEMGPAPSLITPETPANFKRIGVAD FFKELFKRRLEKKSFLDVLRTQN" mobile_element complement(23282996..23283116) /note="source:scaffold_10_CACTA_0127 10161 10234" /mobile_element_type="transposon:TIR/CACTA" gene complement(23283030..23288763) /locus_tag="TCM_029577" /note="dbxref CacaoGD:Thecc1EG029577" mRNA complement(join(23283030..23283067,23286825..23287348, 23287456..23287649,23287758..23288036,23288598..23288763)) /locus_tag="TCM_029577" /product="Xyloglucan endo-transglycosylase" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029578t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s02980.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2050t1" mobile_element 23283773..23284876 /note="source:CACAO_on_E241_scaffold_112 1 1138" /mobile_element_type="transposon:TIR/hAT" mobile_element 23285933..23286011 /note="source:CACAO_M_E5899_F5_scaffold_2 20738 20818" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(23286988..23287348,23287456..23287649, 23287758..23288036)) /locus_tag="TCM_029577" /note="paralog of Thecc1EG029578t1" /codon_start=1 /product="Xyloglucan endo-transglycosylase" /protein_id="EOY27841.1" /db_xref="Phytozome:POPTR_0011s02980.1" /db_xref="TAIR:AT3G23730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PCI1" /translation="MGNLRVSSMLVLSLIVGSIIAAFANNFHQDVEITWGGRHAQILG RQGSLLTLSMDKTSRGAGFESTKDFLFGRFNMQMKLIAGNSAGTVTTFYLSSEGPSHD EIDLEFLGNKSGAPYTLHTNVFSHGQGGREEEFHLWFDPTKHFHAYSIVWNPQNIIIL VDNIPIRVFSNQESIGVPYPNHQRMKVYASLWDADDWATRGGRVKTDWSKAPFTAYYR NFVASSAWEMQGLSARGRQLLTWVQKRYRIYNYCNDLKRKQRHGRPPECGHGPSEQQE R" gene complement(23288812..23290087) /locus_tag="TCM_029578" /note="dbxref CacaoGD:Thecc1EG029578" mRNA complement(join(23288812..23289388,23289481..23289674, 23289771..23290087)) /locus_tag="TCM_029578" /product="Xyloglucan endotransglucosylase/hydrolase 16" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g29690.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020198t1" /inference="similar to AA sequence:frave:gene24871" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05884t00001" CDS complement(join(23288980..23289388,23289481..23289674, 23289771..23290043)) /locus_tag="TCM_029578" /note="dbxref frave:gene24871; paralog of Thecc1EG020198t1" /codon_start=1 /product="Xyloglucan endotransglucosylase/hydrolase 16" /protein_id="EOY27842.1" /db_xref="TAIR:AT3G23730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GXE8" /translation="MATFSFPEMLLLSLVMGSFIAASAGDFHQEFELTWGNERAQILD GGKLLTLTLDKTSGSGFRSKNQYIFGRIDMQIKLVAGNSAGTVTAFYLSSEGPNHDEI DFEFLGNLSGDPYILHTNVYSQGKGDREQQFYLWFDPTKNFHTYSIVWNLQRIIFMVD DIPIRVFNNEESYGVPFPKNQPMKLYSSLWDADQWATRGGLVKTDWSKAPFKAYFRNF NANACTWSNGESGCASETSGSVRNNVWRTQALDASGRRILRWVQKYFMVYNYCTDLKR FPQGRPRECRRSRFL" mobile_element complement(23292204..23292299) /note="source:scaffold_5_CACTA_0614 3376 3470" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23292277..23292494) /note="source:CACAO_Helitron_E81_scaffold_3 1217 1425" /mobile_element_type="transposon:Helitron" mobile_element complement(23292278..23292628) /note="source:scaffold_2_CACTA_0244 12887 13226" /mobile_element_type="transposon:TIR/CACTA" gene complement(23292321..23296713) /locus_tag="TCM_029579" /note="dbxref CacaoGD:Thecc1EG029579" mRNA complement(join(23292321..23293176,23293726..23294050, 23294315..23294562,23295081..23295330,23295608..23295722, 23296473..23296713)) /locus_tag="TCM_029579" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29693.m002096" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038224t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021353001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6318t2" mRNA complement(join(23292321..23293176,23293726..23293981, 23294315..23294562,23295081..23295779)) /locus_tag="TCM_029579" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29693.m002096" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038224t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021353001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:PASA:2:TSA:puevd3b028602t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6318t2" mobile_element 23292328..23292820 /note="source:CACAO_M_E4753_F17_scaffold_2 7298 7825" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(23292873..23293176,23293726..23294050, 23294315..23294558,23295077..23295761)) /locus_tag="TCM_029579" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g19690.1.2" /inference="alignment:exonerate- protein:2:ricco:29693.m002096" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038224t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021353001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06975t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6318t2" CDS complement(join(23292910..23293176,23293726..23294050, 23294315..23294562,23295081..23295330,23295608..23295722, 23296473..23296605)) /locus_tag="TCM_029579" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG038224t1" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1" /protein_id="EOY27843.1" /db_xref="Phytozome:GSVIVT01021353001" /db_xref="TAIR:AT1G17020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39224" /translation="MWPDLATTTLNQHFPATRSGRRVPDPTVGSGRQASDLILLTARS GSSINFIAATSFSSENSSTRMGAGPTPLECTLSPIIFYLADAEVVNFGKSIIVPSVQE LAKEPITKIPHRYLRPEQEPHSVLGDELLPSVPIIDLQKLVAGDFVDSELERLHSACK DWGFFQVVNHGVGSSLLEEFRLEIENFFNLPHEEKKLLWQQPDNHEGFGQLFVVSEEQ KLDWSDMFYITTLPHNLRKTDLFEKLPLKLRETLEVYSMEAKNLAMIILAYMARALEM DAEEMRELFTNGVQSMRMNYYPPCPEPDMAIGFSPHSDADALTILFQLNETEGLQIRK DGKWVSIKPLPNAFVVNIGDIMEIVSNGIYRSIEHRAMVNSTKERLSVATFYSSKLDS EIGPALSLIGPSNPTTFRRVSVEKYFKDFFARQLDGKAYLDFRRIRHGEQNAN" CDS complement(join(23292910..23293176,23293726..23293981, 23294315..23294562,23295081..23295341)) /locus_tag="TCM_029579" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG038224t1" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 3" /protein_id="EOY27845.1" /db_xref="Phytozome:GSVIVT01021353001" /db_xref="TAIR:AT1G17020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39224" /translation="MESRADAEVVNFGKSIIVPSVQELAKEPITKIPHRYLRPEQEPH SVLGDELLPSVPIIDLQKLVAGDFVDSELERLHSACKDWGFFQVVNHGVGSSLLEEFR LEIENFFNLPHEEKKLLWQQPDNHEGFGQLFVVSEEQKLDWSDMFYITTLPHNLRKTD LFEKLPLKLRALEMDAEEMRELFTNGVQSMRMNYYPPCPEPDMAIGFSPHSDADALTI LFQLNETEGLQIRKDGKWVSIKPLPNAFVVNIGDIMEIVSNGIYRSIEHRAMVNSTKE RLSVATFYSSKLDSEIGPALSLIGPSNPTTFRRVSVEKYFKDFFARQLDGKAYLDFRR IRHGEQNAN" CDS complement(join(23292910..23293176,23293726..23294050, 23294315..23294558,23295077..23295341)) /locus_tag="TCM_029579" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG038224t1" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 2" /protein_id="EOY27844.1" /db_xref="Phytozome:GSVIVT01021353001" /db_xref="TAIR:AT1G17020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39224" /translation="MESRADAEVVNFGKSIIVPSVQELAKEPITKIPHRYLRPEQEPH SVLGDELLPSVPIIDLQKLVAGDFVDSELERLHSACKDWGFFQVVNHGVGSSLLEEFR LEIENFFNLPHEEKKLLWQQPDNHEGFGQLFVVSEEQKLDWSDMFYITTLPHNLRKTD LFEKLPLKLRETLEVYSMEAKNLAMIILAYMARALEMDAEEMRELFTNGVQSMRMNYY PPCPEPDMAIGFSPHSDADALTILFQLNETEGLQIRKDGKWVSIKPLPNAFVVNIGDI MEIVSNGIYRSIEHRAMVNSTKERLSVATFYSSKLDSEIGPALSLIGPSNPTTFRRVS VEKYFKDFFARQLDGKAYLDFRRIRHGEQNAN" mobile_element 23296373..23297211 /note="source:scaffold_2_CACTA_0244 13876 14708" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23300760..23300923) /note="source:CACAO_on_E506_scaffold_4 5043 5206" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23300924..23301319 /note="source:CACAO_Again_on_S_E193_scaffold_6 1 508" /mobile_element_type="transposon:TIR/hAT" mobile_element 23301320..23305154 /note="source:INTACT306_F10_scaffold_6-int 1 3835" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23305136..23305574 /note="source:CACAO_Again_on_S_E245_scaffold_8 374 821" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(23305155..23305389) /note="source:CACAO_MITE_S26_scaffold_1 330 550" /mobile_element_type="transposon:TIR/MITE" mobile_element 23305581..23305950 /note="source:scaffold_4_CACTA_0483 82 425" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23305786..23306061) /note="source:scaffold_2_CACTA_0243 6528 6853" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23306838..23310200 /note="source:CACAO_on_E48_scaffold_6 1 3363" /mobile_element_type="transposon:TIR/hAT" gene complement(23307345..23308634) /locus_tag="TCM_029581" /note="dbxref CacaoGD:Thecc1EG029581" mRNA complement(23307345..23308634) /locus_tag="TCM_029581" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.79 coverage" CDS complement(23308316..23308627) /locus_tag="TCM_029581" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27846.1" /translation="MPLIYMSSSMMKISHQTKSRFFGSNPMTELPSPIHRCKILCSAE NHVGSVDVRGVLCILNSHLISLNRLQSMLAAHNLMVSKDTSVVLPIRSNVSSEMFGLL D" mobile_element 23310550..23310606 /note="source:scaffold_2_CACTA_0256 2655 2712" /mobile_element_type="transposon:TIR/CACTA" gene 23311179..23314411 /locus_tag="TCM_029582" /note="dbxref CacaoGD:Thecc1EG029582" mRNA join(23311179..23311636,23312038..23312207, 23313305..23313629,23313834..23314411) /locus_tag="TCM_029582" /product="Senescence-related gene 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021331001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025214t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021331001" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1754t1" CDS join(23311355..23311636,23312038..23312207, 23313305..23313629,23313834..23314100) /locus_tag="TCM_029582" /note="paralog of Thecc1EG025214t1" /codon_start=1 /product="Senescence-related gene 1" /protein_id="EOY27847.1" /db_xref="Phytozome:GSVIVT01021331001" /db_xref="TAIR:AT1G17020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B476" /translation="MRHINFSNMASLQVEEFSHSLSEISLQELVKEPIITIPQNFIRL DQEPPSSLPYGSPSPITTPTIDMTRLVSGEDDGLELEKLHSTCKEWGLFQLVNHGVSP SLLEKLKHELEEFYKLPLEEKMKYKMRPGEVEGYGNTAREAGKLDWADRNTLESYLLE LQKLATKLLSLMAKALKIDVTEMIELFDDGMQSVKMTYYPPCPQPELVMGITPHSDAT LLTILNQVNGVDALQIRKGGVWFPVSFVPDAFVVNVGDILEIFSNGIYRSIEHRATAN SEKERISVAFFINPKFEAEVGPSPSLINPKNPPLFKRVGMEQYVKDFFSRKLNGKTYL QHMRIENGEGNSA" mobile_element complement(23312418..23312720) /note="source:scaffold_4_CACTA_0506 2716 3052" /mobile_element_type="transposon:TIR/CACTA" gene 23314578..23316252 /locus_tag="TCM_029583" /note="dbxref CacaoGD:Thecc1EG029583" mRNA join(23314578..23314722,23315155..23315804, 23315901..23316252) /locus_tag="TCM_029583" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc3580t2" CDS join(23315573..23315804,23315901..23315989) /locus_tag="TCM_029583" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27848.1" /translation="MESSILSLLILFAIPAPKTPQSKPPRHYNLPARTTRDQMMIRVT NHNVMQQRPPLPNPEPILLELAQFRSTTFSTSPGKKLFRCETRPWFENVVLPSSFLMV SNFC" gene complement(23316387..23318616) /locus_tag="TCM_029584" /note="dbxref CacaoGD:Thecc1EG029584" mRNA complement(join(23316387..23316824,23316943..23317011, 23317090..23317215,23317311..23317476,23318203..23318616)) /locus_tag="TCM_029584" /product="Eukaryotic translation initiation factor 4E-1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29693.m002098" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020973t1" /inference="similar to AA sequence:Phytozome:Glyma15g09630.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6506t1; inference alignment:Newbler:10:TSA:cgbaL_g01910t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc476t11" mRNA complement(join(23316473..23316824,23316943..23317008, 23317090..23317215,23317311..23317476,23318203..23318549)) /locus_tag="TCM_029584" /product="Eukaryotic translation initiation factor 4E-1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29693.m002098" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020973t1" /inference="similar to AA sequence:Phytozome:Glyma15g09630.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01910t00001; inference alignment:Newbler:10:TSA:cgbaL_g01910t00001" CDS complement(join(23316774..23316824,23316943..23317008, 23317090..23317215,23317311..23317476,23318203..23318495)) /locus_tag="TCM_029584" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG020973t1" /codon_start=1 /product="Eukaryotic translation initiation factor 4E-1 isoform 1" /protein_id="EOY27849.1" /db_xref="Phytozome:Glyma15g09630.2" /db_xref="TAIR:AT4G18040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P48599" /translation="MGVEENLKSLSISEEGNKNPNPNVKEDEEEEPEEGEIVGEEDDS TSSSSKKGVVEQPHPLEHSWTFWFDNPSAKSKQAIWGSSMRPIYTFASVEQFWSLYNN IHHPSKLAVGADFHCFKYKIEPKWEDPVCANGGKWTVTLPRGKSDTCWLYTLLALIGE QFEYGDEICGAVVSVRGRQEKIALWTKNAANETAQISIGKQWKELLDCNDTIGFIFHE DAKKLDKAAKNRYTI" CDS complement(join(23316774..23316824,23316943..23317011, 23317090..23317215,23317311..23317476,23318203..23318495)) /locus_tag="TCM_029584" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG020973t1" /codon_start=1 /product="Eukaryotic translation initiation factor 4E-1 isoform 2" /protein_id="EOY27850.1" /db_xref="Phytozome:Glyma15g09630.2" /db_xref="TAIR:AT4G18040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P48599" /translation="MGVEENLKSLSISEEGNKNPNPNVKEDEEEEPEEGEIVGEEDDS TSSSSKKGVVEQPHPLEHSWTFWFDNPSAKSKQAIWGSSMRPIYTFASVEQFWSLYNN IHHPSKLAVGADFHCFKYKIEPKWEDPVCANGGKWTVTLPRGKSDTCWLYTLLALIGE QFEYGDEICGAVVSVRGRQEKIALWTKNAANETAQQISIGKQWKELLDCNDTIGFIFH EDAKKLDKAAKNRYTI" mobile_element complement(23319411..23319471) /note="source:scaffold_1_CACTA_0001 1992 2054" /mobile_element_type="transposon:TIR/CACTA" gene complement(23319503..23324194) /locus_tag="TCM_029585" /note="dbxref CacaoGD:Thecc1EG029585" mRNA complement(join(23319503..23319999,23320140..23320261, 23320888..23320954,23321060..23321181,23321314..23321397, 23321480..23321540,23321627..23321691,23321769..23321909, 23321983..23322046,23322288..23323067,23323890..23324194)) /locus_tag="TCM_029585" /product="DNA-binding bromodomain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021322001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041969t1" /inference="similar to AA sequence:ricco:29693.m002099" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01257t00002" CDS complement(join(23319793..23319999,23320140..23320261, 23320888..23320954,23321060..23321181,23321314..23321397, 23321480..23321540,23321627..23321691,23321769..23321909, 23321983..23322046,23322288..23323040)) /locus_tag="TCM_029585" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29693.m002099; paralog of Thecc1EG041969t1" /codon_start=1 /product="DNA-binding bromodomain-containing protein, putative isoform 1" /protein_id="EOY27851.1" /db_xref="TAIR:AT5G46550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C0I5" /translation="MIAAESVVPKQRLKIKFPSQRIEAISAPQSFEFGQQLSSSFDGK KTSSAGTLKVTSGAYKRGPEGVIVDSQPEKRRKMDRGMTQQCSALLKALMKHPAGWVF NQPVDPEALGIPDYFSIVKNPMDLGTIKSKLVKNAYLGIEEFVADINLTFSNAMLYNP ASNNVHKMAEEMNEFFEVRWKSLEDKWNQEDLKGGHGKNLSVRLKDVNESRQSCPKSQ LSRNDSLPKSSRPSEDKVVKVPLNARAAEVPFMVELPKPAQKCVSRLAGKSLQKGTTS GGRAHGSINAKPPLSPDACKCSSCGSIKCQCSLPSDSNHASSSDVTSERSLGGDLRAC RTDASKLDCSAKSTLTSQMTKSDPDSDGAVSALDDENVCLSSQLTTPATDAASGEGLL TPIFAIQMSPKKALRAAMLRSRFADTILKAKQKRLLDHGDKVDPVKMQQQKEKLERRQ REEKAKIEAQIRAAEAAAKMKAEVELKKQREREREAARNALQQMEKTAEIEQNVEILK ELEMLIGFSLSNNWHGRKNPLHQLGLFMKDEYFEDGHEDAVMNEVGEEGEILS" mRNA complement(join(23320000..23320261,23320888..23320954, 23321060..23321181,23321480..23321540,23321627..23321691, 23321769..23321909,23321983..23322046,23322288..23323067, 23323890..23323972)) /locus_tag="TCM_029585" /product="DNA-binding bromodomain-containing protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021322001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041969t1" /inference="similar to AA sequence:ricco:29693.m002099" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc517t1; inference alignment:Newbler:10:TSA:cgbaP2_g01257t00002; inference alignment:Newbler:10:TSA:cgbaL_g15478t00001" mRNA complement(join(23320000..23320261,23320888..23321181, 23321314..23321397,23321480..23321540,23321627..23321691, 23321769..23321909,23321983..23322046,23322288..23323067, 23323890..23323972)) /locus_tag="TCM_029585" /product="DNA-binding bromodomain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021322001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041969t1" /inference="similar to AA sequence:ricco:29693.m002099" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc517t3; inference alignment:Newbler:10:TSA:cgbaP2_g01257t00002; inference alignment:Newbler:10:TSA:cgbaL_g15478t00001" mRNA complement(join(23320000..23320263,23321313..23321397, 23321480..23321540,23321627..23321691,23321769..23321909, 23321983..23322046,23322288..23323067,23323890..23323972)) /locus_tag="TCM_029585" /product="DNA-binding bromodomain-containing protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021322001" /inference="similar to AA sequence:ricco:29693.m002099" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc526t7; inference alignment:Newbler:10:TSA:cgbaP2_g01257t00002; inference alignment:Newbler:10:TSA:cgbaL_g15478t00001" CDS complement(join(23320089..23320261,23320888..23320954, 23321060..23321181,23321480..23321540,23321627..23321691, 23321769..23321909,23321983..23322046,23322288..23323040)) /locus_tag="TCM_029585" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29693.m002099; paralog of Thecc1EG041969t1" /codon_start=1 /product="DNA-binding bromodomain-containing protein, putative isoform 3" /protein_id="EOY27853.1" /db_xref="TAIR:AT5G46550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C0I5" /translation="MIAAESVVPKQRLKIKFPSQRIEAISAPQSFEFGQQLSSSFDGK KTSSAGTLKVTSGAYKRGPEGVIVDSQPEKRRKMDRGMTQQCSALLKALMKHPAGWVF NQPVDPEALGIPDYFSIVKNPMDLGTIKSKLVKNAYLGIEEFVADINLTFSNAMLYNP ASNNVHKMAEEMNEFFEVRWKSLEDKWNQEDLKGGHGKNLSVRLKDVNESRQSCPKSQ LSRNDSLPKSSRPSEDKVVKVPLNARAAEVPFMVELPKPAQKCVSRLAGKSLQKGTTS GGRAHGSINAKPPLSPDACKCSSCGSIKCQCSLPSDSNHASSSDVTSERSLGGDLRAC RTDASKLDCSAKSTLTSQMTKSDPDSDGLLTPIFAIQMSPKKALRAAMLRSRFADTIL KAKQKRLLDHGDKVDPVKMQQQKEKLERRQREEKAKIEAQIRAAEAAAKMKAEVELKK QREREREAARNALQQVNNLVFSFCPYFYYWL" CDS complement(join(23320089..23320263,23321313..23321397, 23321480..23321540,23321627..23321691,23321769..23321909, 23321983..23322046,23322288..23323040)) /locus_tag="TCM_029585" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29693.m002099" /codon_start=1 /product="DNA-binding bromodomain-containing protein, putative isoform 4" /protein_id="EOY27854.1" /db_xref="TAIR:AT5G46550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I128" /translation="MIAAESVVPKQRLKIKFPSQRIEAISAPQSFEFGQQLSSSFDGK KTSSAGTLKVTSGAYKRGPEGVIVDSQPEKRRKMDRGMTQQCSALLKALMKHPAGWVF NQPVDPEALGIPDYFSIVKNPMDLGTIKSKLVKNAYLGIEEFVADINLTFSNAMLYNP ASNNVHKMAEEMNEFFEVRWKSLEDKWNQEDLKGGHGKNLSVRLKDVNESRQSCPKSQ LSRNDSLPKSSRPSEDKVVKVPLNARAAEVPFMVELPKPAQKCVSRLAGKSLQKGTTS GGRAHGSINAKPPLSPDACKCSSCGSIKCQCSLPSDSNHASSSDVTSERSLGGDLRAC RTDASKLDCSAKSTLTSQMTKSDPDSDGAVSALDDENVCLSSQLTTPATDAASGEGEK AKIEAQIRAAEAAAKMKAEVELKKQREREREAARNALQQVNNLVFSFCPYFYYWL" CDS complement(join(23320955..23321181,23321314..23321397, 23321480..23321540,23321627..23321691,23321769..23321909, 23321983..23322046,23322288..23323040)) /locus_tag="TCM_029585" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29693.m002099; paralog of Thecc1EG041969t1" /codon_start=1 /product="DNA-binding bromodomain-containing protein, putative isoform 2" /protein_id="EOY27852.1" /db_xref="TAIR:AT5G46550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I128" /translation="MIAAESVVPKQRLKIKFPSQRIEAISAPQSFEFGQQLSSSFDGK KTSSAGTLKVTSGAYKRGPEGVIVDSQPEKRRKMDRGMTQQCSALLKALMKHPAGWVF NQPVDPEALGIPDYFSIVKNPMDLGTIKSKLVKNAYLGIEEFVADINLTFSNAMLYNP ASNNVHKMAEEMNEFFEVRWKSLEDKWNQEDLKGGHGKNLSVRLKDVNESRQSCPKSQ LSRNDSLPKSSRPSEDKVVKVPLNARAAEVPFMVELPKPAQKCVSRLAGKSLQKGTTS GGRAHGSINAKPPLSPDACKCSSCGSIKCQCSLPSDSNHASSSDVTSERSLGGDLRAC RTDASKLDCSAKSTLTSQMTKSDPDSDGAVSALDDENVCLSSQLTTPATDAASGEGLL TPIFAIQMSPKKALRAAMLRSRFADTILKAKQKRLLDHVSFCWGIFWMPVVYFMLCGV ELVLNSNNLCCLVT" mobile_element 23324854..23324979 /note="source:scaffold_9_CACTA_0942 5247 5377" /mobile_element_type="transposon:TIR/CACTA" gene complement(23325307..23327454) /locus_tag="TCM_029586" /note="dbxref CacaoGD:Thecc1EG029586" mRNA complement(join(23325307..23325640,23325798..23325917, 23326011..23326169,23326279..23326495,23326595..23326631, 23327176..23327454)) /locus_tag="TCM_029586" /product="Nodulin MtN3 family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021317001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032142t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021317001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04545t00001" CDS complement(join(23325533..23325640,23325798..23325917, 23326011..23326169,23326279..23326495,23326595..23326631, 23327176..23327236)) /locus_tag="TCM_029586" /note="paralog of Thecc1EG032142t1" /codon_start=1 /product="Nodulin MtN3 family protein, putative" /protein_id="EOY27855.1" /db_xref="Phytozome:GSVIVT01021317001" /db_xref="TAIR:AT3G14770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LH79" /translation="MSSTALSSVYAVCSDAAGVAGNIFAFVLFLSPIPTFRRIIRNES TEQFSGMPYICALLNCLICLWYGMPLVKPGVILVATVNSTGAVFQLIYICIFIRYAAK PMKLKMLGFLISVFAIFALIVFVSLRFLDSPSRQLFVGYLSVASLVSMFASPLLVINL VIKMRSVEYMPFSLSLATFLMSLAFYVYGMFKHDAFICVPNGIGTVLGTVQLALYAYY NSASREELRHPLINP" gene 23328958..23335570 /locus_tag="TCM_029587" /note="dbxref CacaoGD:Thecc1EG029587" mRNA join(23328958..23329245,23329935..23330054, 23330876..23330999,23331116..23331253,23331394..23331603, 23331817..23331992,23332081..23332153,23332246..23332369, 23333010..23333188,23333277..23333331,23333405..23333745, 23333824..23333884,23334570..23334789,23334884..23335068, 23335140..23335570) /locus_tag="TCM_029587" /product="5'-3' exonuclease family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g12770.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021316001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc867t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6359t3" mRNA join(23328958..23329245,23329935..23330054, 23330876..23330999,23331116..23331253,23331394..23331603, 23331817..23331992,23332081..23332153,23332246..23332369, 23333010..23333188,23333277..23333331,23333405..23333745, 23333824..23333884,23334570..23334789,23334884..23335068, 23335252..23335570) /locus_tag="TCM_029587" /product="5'-3' exonuclease family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g12770.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021316001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc854t2; alternateUTRof:Thecc1EG029587t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6359t3" mRNA join(23328958..23329245,23329935..23330054, 23330876..23330999,23331116..23331253,23331394..23331603, 23331817..23331992,23332081..23332153,23332246..23332369, 23333010..23333188,23333277..23333331,23333405..23333745, 23333833..23333884,23334570..23334789,23334884..23335068, 23335125..23335570) /locus_tag="TCM_029587" /product="5'-3' exonuclease family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g12770.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021316001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc854t1; alternateUTRof:Thecc1EG029587t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6359t3" mRNA join(23328958..23329245,23329935..23330054, 23330876..23330999,23331116..23331253,23331394..23331603, 23331817..23331992,23332081..23332153,23332246..23332369, 23333010..23333188,23333277..23333331,23333405..23333745, 23333833..23333884,23334570..23334789,23334884..23335068, 23335140..23335564) /locus_tag="TCM_029587" /product="5'-3' exonuclease family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g12770.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021316001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6359t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6359t3" mRNA join(23328958..23329245,23329935..23330054, 23330876..23330999,23331116..23331253,23331394..23331603, 23331817..23331992,23332081..23332153,23332246..23332369, 23333010..23333188,23333277..23333331,23333405..23333745, 23333833..23333884,23334570..23334789,23334884..23335068, 23335252..23335564) /locus_tag="TCM_029587" /product="5'-3' exonuclease family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g12770.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021316001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6359t4; alternateUTRof:Thecc1EG029587t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6359t3" CDS join(23329085..23329245,23329935..23330054, 23330876..23330999,23331116..23331253,23331394..23331603, 23331817..23331992,23332081..23332153,23332246..23332369, 23333010..23333188,23333277..23333331,23333405..23333745, 23333824..23333884,23334570..23334789,23334884..23334935) /locus_tag="TCM_029587" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="5'-3' exonuclease family protein isoform 2" /protein_id="EOY27857.1" /db_xref="Phytozome:GSVIVT01021316001" /db_xref="TAIR:AT1G29630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L6Z7" /translation="MGIQGLLPLLKSIMVPIHIKDLEGCSVAIDTYSWLHKGALSCST ELCKGLPTSRHIEYCMHRVNLLRHYGVKPVLVFDGGLLPMKIEQENKRARARKENLAR AIEHESYGNSAAAYECYQKAVDISPSTAHELIVVLKQENVCFVVAPYEADAQMTFLAV SKQVDAVITEDSDLIPFGCPRVIFKMDKFGQGVEFKSSMLQQNKELSFAGFTKQMLLE MCILSGCDYLQSLSGMGLKRAHALMKKFKSYDKVIKHLRYSSVSIPPLYEESFKKAIF TFQHQRVYDPIIEDVVHLSDISDNIGDDLDFLGPSIPQHIAQGIARGDLDPFTQMPFQ GVSYSSQLVLDRNLHLKSFKPESERKKLDLPVQKNLLTNYFCFASLEAKRTFRAPRVS PKHSTLVADSSISPKEHIIVEDSSCEIDTLLLPSPDSANTNNSAENGFNSKLPEYSES PSPDEMRSPDHALPLESNQSIHGPSPASHKEHDCSIVLDAVKSKTITESRKVIIKSRY FQNKQHNENDLEDKQGKFCSKDGIANDLPESGNPDGYGNTYFKGMTLKRKNSSLECVE TLSQENVNPKQIYMGASRDDNGHCNPKLETFMDTKAGEAKFGSNISHLGRYSDIAEKS MERFVSVISSFRFSSPGSRASGLRAPLKDARNTCTNRSSASVDLSQFAYVPKN" CDS join(23329085..23329245,23329935..23330054, 23330876..23330999,23331116..23331253,23331394..23331603, 23331817..23331992,23332081..23332153,23332246..23332369, 23333010..23333188,23333277..23333331,23333405..23333745, 23333824..23333884,23334570..23334789,23334884..23334935) /locus_tag="TCM_029587" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="5'-3' exonuclease family protein isoform 2" /protein_id="EOY27859.1" /db_xref="Phytozome:GSVIVT01021316001" /db_xref="TAIR:AT1G29630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L6Z7" /translation="MGIQGLLPLLKSIMVPIHIKDLEGCSVAIDTYSWLHKGALSCST ELCKGLPTSRHIEYCMHRVNLLRHYGVKPVLVFDGGLLPMKIEQENKRARARKENLAR AIEHESYGNSAAAYECYQKAVDISPSTAHELIVVLKQENVCFVVAPYEADAQMTFLAV SKQVDAVITEDSDLIPFGCPRVIFKMDKFGQGVEFKSSMLQQNKELSFAGFTKQMLLE MCILSGCDYLQSLSGMGLKRAHALMKKFKSYDKVIKHLRYSSVSIPPLYEESFKKAIF TFQHQRVYDPIIEDVVHLSDISDNIGDDLDFLGPSIPQHIAQGIARGDLDPFTQMPFQ GVSYSSQLVLDRNLHLKSFKPESERKKLDLPVQKNLLTNYFCFASLEAKRTFRAPRVS PKHSTLVADSSISPKEHIIVEDSSCEIDTLLLPSPDSANTNNSAENGFNSKLPEYSES PSPDEMRSPDHALPLESNQSIHGPSPASHKEHDCSIVLDAVKSKTITESRKVIIKSRY FQNKQHNENDLEDKQGKFCSKDGIANDLPESGNPDGYGNTYFKGMTLKRKNSSLECVE TLSQENVNPKQIYMGASRDDNGHCNPKLETFMDTKAGEAKFGSNISHLGRYSDIAEKS MERFVSVISSFRFSSPGSRASGLRAPLKDARNTCTNRSSASVDLSQFAYVPKN" CDS join(23329085..23329245,23329935..23330054, 23330876..23330999,23331116..23331253,23331394..23331603, 23331817..23331992,23332081..23332153,23332246..23332369, 23333010..23333188,23333277..23333331,23333405..23333745, 23333833..23333884,23334570..23334789,23334884..23334935) /locus_tag="TCM_029587" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="5'-3' exonuclease family protein isoform 1" /protein_id="EOY27856.1" /db_xref="Phytozome:GSVIVT01021316001" /db_xref="TAIR:AT1G29630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L6Z7" /translation="MGIQGLLPLLKSIMVPIHIKDLEGCSVAIDTYSWLHKGALSCST ELCKGLPTSRHIEYCMHRVNLLRHYGVKPVLVFDGGLLPMKIEQENKRARARKENLAR AIEHESYGNSAAAYECYQKAVDISPSTAHELIVVLKQENVCFVVAPYEADAQMTFLAV SKQVDAVITEDSDLIPFGCPRVIFKMDKFGQGVEFKSSMLQQNKELSFAGFTKQMLLE MCILSGCDYLQSLSGMGLKRAHALMKKFKSYDKVIKHLRYSSVSIPPLYEESFKKAIF TFQHQRVYDPIIEDVVHLSDISDNIGDDLDFLGPSIPQHIAQGIARGDLDPFTQMPFQ GVSYSSQLVLDRNLHLKSFKPESERKKLDLPVQKNLLTNYFCFASLEAKRTFRAPRVS PKHSTLVADSSISPKEHIIVEDSSCEIDTLLLPSPDSANTNNSAENGFNSKLPEYSES PSPDEMRSPDHALPLESNQSIHGPSPASHKEHDCSIVLDAVKSKTITESRKVIIKSRY FQNKQHNENDLEDKQGKFCSKDGIANDLPESGNPDGYGNTYFKGMTLKRKNSSLECVE TENVNPKQIYMGASRDDNGHCNPKLETFMDTKAGEAKFGSNISHLGRYSDIAEKSMER FVSVISSFRFSSPGSRASGLRAPLKDARNTCTNRSSASVDLSQFAYVPKN" CDS join(23329085..23329245,23329935..23330054, 23330876..23330999,23331116..23331253,23331394..23331603, 23331817..23331992,23332081..23332153,23332246..23332369, 23333010..23333188,23333277..23333331,23333405..23333745, 23333833..23333884,23334570..23334789,23334884..23334935) /locus_tag="TCM_029587" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="5'-3' exonuclease family protein isoform 1" /protein_id="EOY27858.1" /db_xref="Phytozome:GSVIVT01021316001" /db_xref="TAIR:AT1G29630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L6Z7" /translation="MGIQGLLPLLKSIMVPIHIKDLEGCSVAIDTYSWLHKGALSCST ELCKGLPTSRHIEYCMHRVNLLRHYGVKPVLVFDGGLLPMKIEQENKRARARKENLAR AIEHESYGNSAAAYECYQKAVDISPSTAHELIVVLKQENVCFVVAPYEADAQMTFLAV SKQVDAVITEDSDLIPFGCPRVIFKMDKFGQGVEFKSSMLQQNKELSFAGFTKQMLLE MCILSGCDYLQSLSGMGLKRAHALMKKFKSYDKVIKHLRYSSVSIPPLYEESFKKAIF TFQHQRVYDPIIEDVVHLSDISDNIGDDLDFLGPSIPQHIAQGIARGDLDPFTQMPFQ GVSYSSQLVLDRNLHLKSFKPESERKKLDLPVQKNLLTNYFCFASLEAKRTFRAPRVS PKHSTLVADSSISPKEHIIVEDSSCEIDTLLLPSPDSANTNNSAENGFNSKLPEYSES PSPDEMRSPDHALPLESNQSIHGPSPASHKEHDCSIVLDAVKSKTITESRKVIIKSRY FQNKQHNENDLEDKQGKFCSKDGIANDLPESGNPDGYGNTYFKGMTLKRKNSSLECVE TENVNPKQIYMGASRDDNGHCNPKLETFMDTKAGEAKFGSNISHLGRYSDIAEKSMER FVSVISSFRFSSPGSRASGLRAPLKDARNTCTNRSSASVDLSQFAYVPKN" CDS join(23329085..23329245,23329935..23330054, 23330876..23330999,23331116..23331253,23331394..23331603, 23331817..23331992,23332081..23332153,23332246..23332369, 23333010..23333188,23333277..23333331,23333405..23333745, 23333833..23333884,23334570..23334789,23334884..23334935) /locus_tag="TCM_029587" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="5'-3' exonuclease family protein isoform 1" /protein_id="EOY27860.1" /db_xref="Phytozome:GSVIVT01021316001" /db_xref="TAIR:AT1G29630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L6Z7" /translation="MGIQGLLPLLKSIMVPIHIKDLEGCSVAIDTYSWLHKGALSCST ELCKGLPTSRHIEYCMHRVNLLRHYGVKPVLVFDGGLLPMKIEQENKRARARKENLAR AIEHESYGNSAAAYECYQKAVDISPSTAHELIVVLKQENVCFVVAPYEADAQMTFLAV SKQVDAVITEDSDLIPFGCPRVIFKMDKFGQGVEFKSSMLQQNKELSFAGFTKQMLLE MCILSGCDYLQSLSGMGLKRAHALMKKFKSYDKVIKHLRYSSVSIPPLYEESFKKAIF TFQHQRVYDPIIEDVVHLSDISDNIGDDLDFLGPSIPQHIAQGIARGDLDPFTQMPFQ GVSYSSQLVLDRNLHLKSFKPESERKKLDLPVQKNLLTNYFCFASLEAKRTFRAPRVS PKHSTLVADSSISPKEHIIVEDSSCEIDTLLLPSPDSANTNNSAENGFNSKLPEYSES PSPDEMRSPDHALPLESNQSIHGPSPASHKEHDCSIVLDAVKSKTITESRKVIIKSRY FQNKQHNENDLEDKQGKFCSKDGIANDLPESGNPDGYGNTYFKGMTLKRKNSSLECVE TENVNPKQIYMGASRDDNGHCNPKLETFMDTKAGEAKFGSNISHLGRYSDIAEKSMER FVSVISSFRFSSPGSRASGLRAPLKDARNTCTNRSSASVDLSQFAYVPKN" gene 23335578..23337174 /locus_tag="TCM_029588" /note="dbxref CacaoGD:Thecc1EG029588" mRNA join(23335578..23335863,23336131..23337174) /locus_tag="TCM_029588" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.55 coverage" CDS join(23335658..23335863,23336131..23336212) /locus_tag="TCM_029588" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27861.1" /translation="MLQNVAFWSCNYYLGTTYSAASFFTPRIFREILFIKLIIMSYNI QKIMDACEFLKKFRVIESSCWSMITKTGFAVLVSISRVRKQGKPGVNNPQH" gene complement(23340575..23341933) /locus_tag="TCM_029589" /note="dbxref CacaoGD:Thecc1EG029589" mRNA complement(23340575..23341933) /locus_tag="TCM_029589" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene24877" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400023821" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g11205t00001" CDS complement(23341306..23341737) /locus_tag="TCM_029589" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27862.1" /db_xref="Phytozome:PGSC0003DMP400023821" /db_xref="TAIR:AT1G29640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7KDV9" /translation="MAEEEFQESEVIFSDNSNHYSTHDEDDDGCLDYRGFSKNDRVPA RNSNNKSKRNTKKKKIASSLPVNIPRHCHGTVFHCGEADDFEEEQDDEGEIVPPHVIL GRRIAGKMAFSVCTGNGRTLKGRDLSQVRNSILRMTGFLEA" gene 23346350..23348338 /locus_tag="TCM_029590" /note="dbxref CacaoGD:Thecc1EG029590" mRNA join(23346350..23346529,23346636..23346757, 23346853..23346949,23347076..23347219,23347633..23347845, 23347987..23348338) /locus_tag="TCM_029590" /product="Pentatricopeptide repeat superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29612.m000383" /inference="similar to AA sequence:Phytozome:GSVIVT01021319001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10603t00001" CDS join(23346470..23346529,23346636..23346757, 23346853..23346949,23347076..23347219,23347633..23347845, 23347987..23348181) /locus_tag="TCM_029590" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein" /protein_id="EOY27863.1" /db_xref="Phytozome:GSVIVT01021319001" /db_xref="TAIR:AT4G18975.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJV2" /translation="MAFSCVHSISYPFSPWAENKVRRNEVAFLLDSGFSICRISYVKC SQKLGEQSLGISEAVEKKPVKKVGKNEHHLWKKRDSAGSGQKALNLVRIISQLPNEKE AVYGALDKWTAWETEFPLIAAAKALRILRKRSQWLRVIQVAKWMLSKGQGATMGTYDT LLLAFDMDKRVDEAESLWNMILHIHTRSISKRLFSRMISLYDHHNMQDKIIEVFADME ELCVRPDENTVRKVARAFQKLGQEDKQKLVLRRYLSKWKYIHFNGERVRVTRYESDED " gene complement(23349015..23355024) /locus_tag="TCM_029591" /note="dbxref CacaoGD:Thecc1EG029591" mRNA complement(join(23349015..23349882,23349982..23350195, 23350315..23350672,23350797..23350894,23350993..23351554, 23353831..23353948,23354141..23354335,23354433..23354625, 23354699..23355024)) /locus_tag="TCM_029591" /product="Subtilase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30026.m001511" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002479t1" /inference="similar to AA sequence:frave:gene24861" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6353t1" mRNA complement(join(23349015..23349882,23349982..23350195, 23350315..23350672,23350797..23350894,23350993..23351554, 23353831..23353948,23354141..23354625,23354699..23355024)) /locus_tag="TCM_029591" /product="Subtilase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30026.m001511" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002479t1" /inference="similar to AA sequence:frave:gene24861" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:PASA:2:TSA:puevd3b028615t1a4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6353t1" CDS complement(join(23349350..23349882,23349982..23350195, 23350315..23350672,23350797..23350894,23350993..23351554, 23353831..23353948,23354141..23354335,23354433..23354625, 23354699..23354770)) /locus_tag="TCM_029591" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene24861; paralog of Thecc1EG002479t1" /codon_start=1 /product="Subtilase family protein, putative isoform 1" /protein_id="EOY27864.1" /db_xref="TAIR:AT5G45650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KEL0" /translation="METIYRFFLPLIFFPLLASCLEKQVYIVHFGEHSGEKGLHEIEE THQSYLYSVKETKEDAQSSLLYSYKHSINGFAAVLTPDEASKLSEMEEVVSVFPTRSR NYSLQTTRSWEFVGLNEEEGLSSGHESNMGREDLLAKASYGKDVIIGVLDSGVWPESA SFSDEGMEPIPESKSWKGICQEGVAFNSSHCNRKIIGARYYVKGFEHEKGTVNATEDY LSPRDMDGHGSHTASTAAGRQVPDVAALGGLARGTASGGAPLARLAIYKVCWAIPNQS KADGNLCMFEDILAGIDDAIADGVDIISISIGTSDPVPYEEDYLAVGALHAAKRNILV VCSAGNNGPAPGTLSNPAPWLMTVGASSLDRAFLAPVMLGNGREIMGQTVAPDKLENE MYPLVYAGDAVFPDVPQNSTGQCLPGSLNPDMVKGKIVVCMRGAGRRLDKGLEVKRAG GVGLILGNAEANGNRLSCDPHFLPASAVSYNDATKILEYIRSTENPMATISPAQTVMH YKPAPFMAGFTSQGPNVIDLNILKPDITAPGIQILAAWSEASSPTKLEYDHRIVKYNF DSGTSMACPHVSGAAALLKAIHPDWSVAAIRSALMTTARITNNLDQLIRDEVGNTATP FQYGAGHFQPIKAADPGLIYDASYDDYLLYLCSLGLNKLDSTFKCPEDPPSPVNLNYP SFAIPNLNGTVTITRTVTNVGSSNSKYYFSVKPPPGVHVKASPSILFFDHIGQKQSFS ITVSPKDFGPIAKRSAYGFGFYTWTDGFYRVRSPMAVYLP" CDS complement(join(23349350..23349882,23349982..23350195, 23350315..23350672,23350797..23350894,23350993..23351554, 23353831..23353948,23354141..23354522)) /locus_tag="TCM_029591" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene24861; paralog of Thecc1EG002479t1" /codon_start=1 /product="Subtilase family protein isoform 2" /protein_id="EOY27865.1" /db_xref="TAIR:AT5G45650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KEL0" /translation="MLNLPFFTATSTASMALLQCSPQMKPPSSLVISNTLLPHSPFFS FLSWGYYIILFLVCLLTTEMEEVVSVFPTRSRNYSLQTTRSWEFVGLNEEEGLSSGHE SNMGREDLLAKASYGKDVIIGVLDSGVWPESASFSDEGMEPIPESKSWKGICQEGVAF NSSHCNRKIIGARYYVKGFEHEKGTVNATEDYLSPRDMDGHGSHTASTAAGRQVPDVA ALGGLARGTASGGAPLARLAIYKVCWAIPNQSKADGNLCMFEDILAGIDDAIADGVDI ISISIGTSDPVPYEEDYLAVGALHAAKRNILVVCSAGNNGPAPGTLSNPAPWLMTVGA SSLDRAFLAPVMLGNGREIMGQTVAPDKLENEMYPLVYAGDAVFPDVPQNSTGQCLPG SLNPDMVKGKIVVCMRGAGRRLDKGLEVKRAGGVGLILGNAEANGNRLSCDPHFLPAS AVSYNDATKILEYIRSTENPMATISPAQTVMHYKPAPFMAGFTSQGPNVIDLNILKPD ITAPGIQILAAWSEASSPTKLEYDHRIVKYNFDSGTSMACPHVSGAAALLKAIHPDWS VAAIRSALMTTARITNNLDQLIRDEVGNTATPFQYGAGHFQPIKAADPGLIYDASYDD YLLYLCSLGLNKLDSTFKCPEDPPSPVNLNYPSFAIPNLNGTVTITRTVTNVGSSNSK YYFSVKPPPGVHVKASPSILFFDHIGQKQSFSITVSPKDFGPIAKRSAYGFGFYTWTD GFYRVRSPMAVYLP" mobile_element 23351613..23351702 /note="source:scaffold_5_CACTA_0614 3407 3495" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23354959..23355023 /note="source:scaffold_4_CACTA_0511 7084 7148" /mobile_element_type="transposon:TIR/CACTA" gene complement(23355785..23362918) /locus_tag="TCM_029592" /note="dbxref CacaoGD:Thecc1EG029592" mRNA complement(join(23355785..23356924,23356998..23357096, 23357189..23357319,23357448..23357535,23357623..23357745, 23357815..23357991,23358125..23358242,23358540..23358727, 23358816..23358916,23359021..23359069,23359446..23359534, 23360072..23360222,23360375..23360476,23360603..23360717, 23361439..23361827,23361907..23362004,23362101..23362458, 23362546..23362914)) /locus_tag="TCM_029592" /product="Trehalose-6-phosphate synthase isoform 1" /inference="alignment:exonerate- protein:2:ricco:30026.m001510" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032130t1" /inference="similar to AA sequence:frave:gene24860" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6383t2" CDS complement(join(23356547..23356924,23356998..23357096, 23357189..23357319,23357448..23357535,23357623..23357745, 23357815..23357991,23358125..23358242,23358540..23358727, 23358816..23358916,23359021..23359069,23359446..23359534, 23360072..23360222,23360375..23360476,23360603..23360717, 23361439..23361827,23361907..23362004,23362101..23362458, 23362546..23362596)) /locus_tag="TCM_029592" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene24860; paralog of Thecc1EG032130t1" /codon_start=1 /product="Trehalose-6-phosphate synthase isoform 1" /protein_id="EOY27866.1" /db_xref="TAIR:AT1G78580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SYM4" /translation="MSISSQEICILRKDKNLALLQTNGMPGNKYNCSPGTPRTRLERL LRERELRKFNKSLNEGETESSTNDPSSPDAETSTWFNDEESLETVSAGRVSLDGSKQR LLVVANRLPVSAVRRGEDSWQLEMSVGGLVTALLGVKEFETRWIGWAGVNVPDEIGQK ALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQL DAYKKANQMFADVVNEHYEEGDVVWCHDYHLMFLPKCLKERNNKMKVGWFLHTPFPSS EIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTR VAAFPIGIDSDRFIRALELPQVQDHMKELKERFAGRKVMLGVDRLDMIKGIPQKILAF EKFLEENPNWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHH LDRSLDFPALCALYAVTDVALVTSSRDGMNLVSYEFVACQASKKGVLILSEFAGAAQS LGAGAILVNPWNITEVASSIGYALNMPADEREKRHHHNFMHVTTHTSQEWAATFVSEL NDTIVEAQLRLRQIPPILPIEVAVDRYSKSNNRLLILGLNATLTEPVDTLGRKANQIK ELELKLHPDLQEPLKKLCDDPKTTIVVLSGSDRSVLDDNFGDYNLWLAAENGMFLRVT GGEWMTTMPENLNMDWVDSVKHVFEYFTERTPRSHFELRETSLIWNYKYADVEFGRLQ ARDMLQHLWTGPISNASLDVVQGSRSVEVRAVGVTKGAAIDRILGEIVHNKGMKEPID YVLCIGHFLAKDEDIYTFFEPELPSEAPAPVRPQIPTPVRTSVSKLPVSKSGSKAARL KKQRSLSTLERNTGYPVIGGASQSTVLERMSLHEGSSVLDLRGDNYFSCSVARKRSNA RYLLGSSDDVVKLLRELADS" mRNA complement(join(23357069..23357319,23357448..23357745, 23357815..23357991,23358125..23358242,23358540..23358727, 23358816..23358916,23359021..23359069,23359446..23359534, 23360072..23360222,23360375..23360476,23360603..23360717, 23361439..23361827,23361907..23362004,23362101..23362458, 23362546..23362918)) /locus_tag="TCM_029592" /product="Trehalose-6-phosphate synthase isoform 2" /inference="alignment:exonerate- protein:2:ricco:30026.m001510" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032130t1" /inference="similar to AA sequence:ricco:30026.m001510" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc500t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6383t2" mRNA complement(join(<23357292..23357319,23357623..23357745, 23357815..23357991,23358125..23358242,23358540..23358727, 23358816..23358916,23359021..23359069,23359446..23359534, 23360072..23360222,23360375..23360476,23360603..23360717, 23361439..23361827,23361907..23362004,23362101..23362458, 23362546..23362918)) /locus_tag="TCM_029592" /product="Trehalose-6-phosphate synthase isoform 3" /inference="alignment:exonerate- protein:2:ricco:30026.m001510" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032130t1" /inference="similar to AA sequence:ricco:30026.m001510" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc490t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6383t2" CDS complement(join(<23357293..23357319,23357623..23357745, 23357815..23357991,23358125..23358242,23358540..23358727, 23358816..23358916,23359021..23359069,23359446..23359534, 23360072..23360222,23360375..23360476,23360603..23360717, 23361439..23361827,23361907..23362004,23362101..23362458, 23362546..23362596)) /locus_tag="TCM_029592" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30026.m001510; paralog of Thecc1EG032130t1" /codon_start=1 /product="Trehalose-6-phosphate synthase isoform 3" /protein_id="EOY27868.1" /db_xref="TAIR:AT1G78580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SYM4" /translation="MSISSQEICILRKDKNLALLQTNGMPGNKYNCSPGTPRTRLERL LRERELRKFNKSLNEGETESSTNDPSSPDAETSTWFNDEESLETVSAGRVSLDGSKQR LLVVANRLPVSAVRRGEDSWQLEMSVGGLVTALLGVKEFETRWIGWAGVNVPDEIGQK ALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQL DAYKKANQMFADVVNEHYEEGDVVWCHDYHLMFLPKCLKERNNKMKVGWFLHTPFPSS EIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTR VAAFPIGIDSDRFIRALELPQVQDHMKELKERFAGRKVMLGVDRLDMIKGIPQKILAF EKFLEENPNWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHH LDRSLDFPALCALYAVTDVALVTSSRDGMNLVSYEFVACQASKKGVLILSEFAGAAQS LGAGAILVNPWNITEVASSIGYALNMPADEREKRHHHNFMHVTTHTSQEWAATFVSEL NDTIVEAQLRLRQIPPILPIEVAVDRYSKSNNRLLILGLNATLTEPVDTLGRKANQIK ELELKLHPDLQEPLKKLCDDPKTTIVVLSGSDRSVLDDNFGDYNLWLAAENGMFLRVT GGEWMTTMPENLNMDWVDSVKMLSLEDFKQ" CDS complement(join(23357590..23357745,23357815..23357991, 23358125..23358242,23358540..23358727,23358816..23358916, 23359021..23359069,23359446..23359534,23360072..23360222, 23360375..23360476,23360603..23360717,23361439..23361827, 23361907..23362004,23362101..23362458,23362546..23362596)) /locus_tag="TCM_029592" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30026.m001510; paralog of Thecc1EG032130t1" /codon_start=1 /product="Trehalose-6-phosphate synthase isoform 2" /protein_id="EOY27867.1" /db_xref="TAIR:AT1G78580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SYM4" /translation="MSISSQEICILRKDKNLALLQTNGMPGNKYNCSPGTPRTRLERL LRERELRKFNKSLNEGETESSTNDPSSPDAETSTWFNDEESLETVSAGRVSLDGSKQR LLVVANRLPVSAVRRGEDSWQLEMSVGGLVTALLGVKEFETRWIGWAGVNVPDEIGQK ALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQL DAYKKANQMFADVVNEHYEEGDVVWCHDYHLMFLPKCLKERNNKMKVGWFLHTPFPSS EIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTR VAAFPIGIDSDRFIRALELPQVQDHMKELKERFAGRKVMLGVDRLDMIKGIPQKILAF EKFLEENPNWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHH LDRSLDFPALCALYAVTDVALVTSSRDGMNLVSYEFVACQASKKGVLILSEFAGAAQS LGAGAILVNPWNITEVASSIGYALNMPADEREKRHHHNFMHVTTHTSQEWAATFVSEL NDTIVEAQLRLRQIPPILPIEVAVDRYSKSNNRLLILGLNATLTEPVDTLGRKANQIK ELELKLHPDLQEPLKKLCDDPKTTIVVLSGSDRSVLDDNFGDYNLWLAAENGMFLRVT GGEWMTTMPENLNMDWVDSVKVHTLVRLSLV" mobile_element 23364200..23364311 /note="source:CACAO_M_E43428_F369_scaffold_5 1277 1337" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23364393..23365677 /locus_tag="TCM_029593" /note="dbxref CacaoGD:Thecc1EG029593" mRNA join(23364393..23365341,23365455..23365677) /locus_tag="TCM_029593" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s03090.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s03090.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc249t3_C2" CDS join(23364748..23365341,23365455..23365622) /locus_tag="TCM_029593" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27869.1" /db_xref="Phytozome:POPTR_0011s03090.1" /db_xref="TAIR:AT5G45660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WPS6" /translation="MSPVQSQALLRPPFTVFVSSKKITAVLLVNSQKLNRVESTAMAS PPRASALLFFLLATTVLQPVNSLSYSQYKSLCSFSHSLLTRVANLRSSRGDAAGSNRA RLVAEKLERWQGVGFWGAAWSVGWDYVWNYAWRGNLNYGEIHGVVSDLNQLGRMLGEL SRSNSEMERASWIARNYGNALAVSKRLLNRLLKAFKRSGALREVIETVEREVVEGGLL RDCLEIGSNDLKGLVQIFKELSSQFFSASDYSQEL" gene 23369245..23371920 /locus_tag="TCM_029594" /note="dbxref CacaoGD:Thecc1EG029594" mRNA join(23369245..23369564,23369789..23369913, 23370018..23370263,23370345..23370600,23370710..23371176, 23371708..23371920) /locus_tag="TCM_029594" /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021309001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036187t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021309001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16530t1" CDS join(23369330..23369564,23369789..23369913, 23370018..23370263,23370345..23370600,23370710..23370933) /locus_tag="TCM_029594" /note="paralog of Thecc1EG036187t1" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /protein_id="EOY27870.1" /db_xref="Phytozome:GSVIVT01021309001" /db_xref="TAIR:AT1G29670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I134" /translation="MEKWWGVLGVVLVLNLSFGVRGAPQVPCYFIFGDSLVDNGNNNQ LSSLARANYLPYGIDFPNGPTGRFSNGKTTIDVIAELLGFDNYIPPYSTVSGRQILGG VNYASAAAGIREETGQQLGGRISFSGQVRNYRETVSQVVNLLGDEDTAANYLSKCIYS IGLGSNDYLNNYFMPAFYSTSRQYNPEQYADVLIQQYTEQLQDLYNYGARKFVLVGLG QIGCSPNELAQNSGDGRTCVERINDANRIFNSKLRALVDQFNNNNSDAKFIYINAYGI FQDITSNPAAYGFKVTNAGCCGVGRNNGQITCLPYQTPCQNRDEYLFWDAFHPGEAAN VIIGRRSYSAQSSSDAYPIDIRRLAQL" gene 23371968..23374404 /locus_tag="TCM_029595" /note="dbxref CacaoGD:Thecc1EG029595" mRNA join(23371968..23372141,23372265..23372527, 23372691..23372815,23372926..23373168,23373270..23373516, 23373698..23374404) /locus_tag="TCM_029595" /product="GDSL-like Lipase/Acylhydrolase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s03130.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029594t1" /inference="similar to AA sequence:ricco:30026.m001502" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6369t2" CDS join(23372083..23372141,23372265..23372527, 23372691..23372815,23372926..23373168,23373270..23373516, 23373698..23373903) /locus_tag="TCM_029595" /note="dbxref ricco:30026.m001502; paralog of Thecc1EG029594t1" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein, putative" /protein_id="EOY27871.1" /db_xref="TAIR:AT5G45670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ILE8" /translation="MAHRKQPPSFCYSRTDPSPRFDSLDIACNKKLCGVILLLLGVSN LQQIEPRKPKVPCYFIFGDSLVDPGNNNELSTSAKSNYPPYGIDFPHGSTGRFSNGRT APDFFAQYLGFENIIPPFTTAKGEEILQGVNYASGSAGIRDETGTKLGINIGLNKQLE NYNITISFIVSILKAKDSATKYLNQYLYSVGMGSNDYINNYFKPGYSTSTKFIPEQYA TILIEQYSQQLTTLYSSGARKVALGGLGPMGCTPDAVASHETYGKLCVEEMNNAVRIF NDKLKQLVDELHEKFKDAKFIFLDNFGGLIKHISILGTNYKITGCCEVVKETGQCVPN TAPCRNSNLFIFFDSFHPSEAANPVTATSQITSLHCLFDTNGFGYS" gene complement(23374705..23383371) /locus_tag="TCM_029596" /note="dbxref CacaoGD:Thecc1EG029596" mRNA complement(join(23374705..23375070,23375755..23375921, 23376036..23376077,23376418..23376459,23376604..23376703, 23376790..23376851,23377783..23377864,23380480..23380715, 23381031..23381202)) /locus_tag="TCM_029596" /product="K-box region and MADS-box transcription factor family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s03140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001841t2" /inference="similar to AA sequence:Phytozome:POPTR_0004s06300.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7198t2; alternateUTRof:Thecc1EG029596t2; inference alignment:Newbler:10:TSA:cgbaP1_g00500t00001_C1" mRNA complement(join(23374736..23375070,23375755..23375921, 23376036..23376077,23376418..23376459,23376604..23376703, 23376790..23376851,23377783..23377864,23380480..23380714, 23380794..23380912)) /locus_tag="TCM_029596" /product="K-box region and MADS-box transcription factor family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s03140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001841t2" /inference="similar to AA sequence:Phytozome:POPTR_0004s06300.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03769t00001; inference alignment:Newbler:10:TSA:cgbaP1_g00500t00001_C1" mRNA complement(join(23374801..23375070,23375755..23375921, 23376036..23376077,23376418..23376459,23376604..23376703, 23376790..23376851,23377783..23377864,23380480..23380715, 23382433..23382564,23383126..23383371)) /locus_tag="TCM_029596" /product="K-box region and MADS-box transcription factor family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s03140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001841t2" /inference="similar to AA sequence:Phytozome:POPTR_0004s06300.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00500t00001_C1" mRNA complement(join(23375025..23375070,23375755..23375921, 23376036..23376077,23376418..23376459,23376604..23376703, 23376790..23376851,23377783..23377864,23380480..23380715, 23380857..23380886)) /locus_tag="TCM_029596" /product="K-box region and MADS-box transcription factor family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s03140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001841t2" /inference="similar to AA sequence:Phytozome:POPTR_0004s06300.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc41t13; alternateUTRof:Thecc1EG029596t2; inference alignment:Newbler:10:TSA:cgbaP1_g00500t00001_C1" CDS complement(join(23375067..23375070,23375755..23375921, 23376036..23376077,23376418..23376459,23376604..23376703, 23376790..23376851,23377783..23377864,23380480..23380715, 23382433..23382564,23383126..23383143)) /locus_tag="TCM_029596" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG001841t2" /codon_start=1 /product="K-box region and MADS-box transcription factor family protein isoform 1" /protein_id="EOY27872.1" /db_xref="Phytozome:POPTR_0004s06300.1" /db_xref="TAIR:AT4G18960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q41892" /translation="MTFNAKDLDDAKTFLGRTKTKSGKARRRNDHRWMERTKDQISCD RFLIQTLAIMVYPNESCETSPQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYE LSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKTCADSSNTGSVSEANAQFYQQ EAAKLRVQIGNLQNSNRHMLGESLSALPMKDLRSLENRLEKGISRIRSKKNELLFAEI EYMQKREIDLHNNNQLLRAKIAENERKQQNINLMPGGSNFEIMHSQPFDSRNYFQVNA LQPANHYPHQDQMALQLV" CDS complement(join(23375067..23375070,23375755..23375921, 23376036..23376077,23376418..23376459,23376604..23376703, 23376790..23376851,23377783..23377864,23380480..23380706)) /locus_tag="TCM_029596" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG001841t2" /codon_start=1 /product="K-box region and MADS-box transcription factor family protein isoform 2" /protein_id="EOY27873.1" /db_xref="Phytozome:POPTR_0004s06300.1" /db_xref="TAIR:AT4G18960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q41892" /translation="MVYPNESCETSPQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLL KKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKTCADSSNTGSVSEANA QFYQQEAAKLRVQIGNLQNSNRHMLGESLSALPMKDLRSLENRLEKGISRIRSKKNEL LFAEIEYMQKREIDLHNNNQLLRAKIAENERKQQNINLMPGGSNFEIMHSQPFDSRNY FQVNALQPANHYPHQDQMALQLV" CDS complement(join(23375067..23375070,23375755..23375921, 23376036..23376077,23376418..23376459,23376604..23376703, 23376790..23376851,23377783..23377864,23380480..23380706)) /locus_tag="TCM_029596" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG001841t2" /codon_start=1 /product="K-box region and MADS-box transcription factor family protein isoform 2" /protein_id="EOY27874.1" /db_xref="Phytozome:POPTR_0004s06300.1" /db_xref="TAIR:AT4G18960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q41892" /translation="MVYPNESCETSPQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLL KKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKTCADSSNTGSVSEANA QFYQQEAAKLRVQIGNLQNSNRHMLGESLSALPMKDLRSLENRLEKGISRIRSKKNEL LFAEIEYMQKREIDLHNNNQLLRAKIAENERKQQNINLMPGGSNFEIMHSQPFDSRNY FQVNALQPANHYPHQDQMALQLV" CDS complement(join(23375067..23375070,23375755..23375921, 23376036..23376077,23376418..23376459,23376604..23376703, 23376790..23376851,23377783..23377864,23380480..23380706)) /locus_tag="TCM_029596" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG001841t2" /codon_start=1 /product="K-box region and MADS-box transcription factor family protein isoform 2" /protein_id="EOY27875.1" /db_xref="Phytozome:POPTR_0004s06300.1" /db_xref="TAIR:AT4G18960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q41892" /translation="MVYPNESCETSPQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLL KKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKTCADSSNTGSVSEANA QFYQQEAAKLRVQIGNLQNSNRHMLGESLSALPMKDLRSLENRLEKGISRIRSKKNEL LFAEIEYMQKREIDLHNNNQLLRAKIAENERKQQNINLMPGGSNFEIMHSQPFDSRNY FQVNALQPANHYPHQDQMALQLV" misc_feature complement(join(23376807..23376851,23377783..23379051)) /locus_tag="TCM_029596" /note="Gene fragment of Thecc1EG029596t1; dbxref gnl|CacaoGD|Thecc1EG029596t1; quality class is mediumpartial-partof is thecc1eg029596t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1302t1; dbxref CacaoGD:Thecc1EG029597t1" gene 23377363..23377786 /locus_tag="TCM_029598" /note="dbxref CacaoGD:Thecc1EG029598" mRNA 23377363..23377786 /locus_tag="TCM_029598" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2431t1" CDS 23377411..23377632 /locus_tag="TCM_029598" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27876.1" /translation="MGYNLVLMHNHVSTQNVTKIQKSRVWRTCDCKQRLIFYSHCRSS ASFFYPYCHSSRCHVCDFKNMNEVLNRTL" gene 23383819..23389691 /locus_tag="TCM_029599" /note="dbxref CacaoGD:Thecc1EG029599" mRNA join(23383819..23383876,23385725..23385853, 23386013..23386104,23388668..23389691) /locus_tag="TCM_029599" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.36 coverage" CDS join(23385775..23385853,23386013..23386104, 23388668..23388739) /locus_tag="TCM_029599" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27877.1" /translation="MPVDGRSSGILSIWDKSFFFLSSKLVRDFNAIQNADERGDVSLW ELASQMSMSLLISLLVLLGYESEKPRRNDDCNPLFP" gene complement(23389470..23395258) /locus_tag="TCM_029600" /note="dbxref CacaoGD:Thecc1EG029600" mRNA complement(join(23389470..23389811,23389880..23390071, 23390163..23390244,23390398..23390512,23391042..23391153, 23391548..23391669,23391835..23391920,23392079..23392185, 23392342..23392404,23392833..23392912,23393282..23393402, 23393591..23393676,23394187..23394282,23394367..23394441, 23394531..23394968)) /locus_tag="TCM_029600" /product="Integrin-linked protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30026.m001500" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001830t1" /inference="similar to AA sequence:ricco:30026.m001500" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc581t13" mRNA complement(join(23390126..23390512,23391042..23391153, 23391548..23391669,23391835..23391920,23392079..23392185, 23392342..23392404,23392833..23392912,23393282..23393402, 23393591..23393676,23394187..23394282,23394367..23394441, 23394531..23395007)) /locus_tag="TCM_029600" /product="Integrin-linked protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30026.m001500" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001830t1" /inference="similar to AA sequence:ricco:30026.m001500" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14448t00001; alternateUTRof:Thecc1EG029600t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc581t13; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6487t2" mRNA complement(join(23390217..23390244,23390398..23391153, 23391548..23391669,23391835..23391920,23392079..23392185, 23392342..23392404,23392833..23392912,23393282..23393402, 23393591..23393676,23394187..23394282,23394367..23394441, 23394531..23395258)) /locus_tag="TCM_029600" /product="Integrin-linked protein kinase family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30026.m001500" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001830t1" /inference="similar to AA sequence:ricco:30026.m001500" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc581t10; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc581t13; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6487t2" CDS complement(join(23390408..23390512,23391042..23391153, 23391548..23391669,23391835..23391920,23392079..23392185, 23392342..23392404,23392833..23392912,23393282..23393402, 23393591..23393676,23394187..23394282,23394367..23394441, 23394531..23394848)) /locus_tag="TCM_029600" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30026.m001500; paralog of Thecc1EG001830t1" /codon_start=1 /product="Integrin-linked protein kinase family protein isoform 1" /protein_id="EOY27878.1" /db_xref="TAIR:AT4G18950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z30" /translation="MENKAAVRFTLGKQSSMAPEKNRAEPDGKEKEEGEEIDGVRLMY LANEGDLDGIRELLGSGIDVNFRDIDDRTALHIAACQAQTDVVSLLLQRGANVESKDR WGSTPLADAIYYKNHDVIKLLEKHGAKPLMAPMHVNHAREVPEYEIDPKELDFTNSVD ITKGTFCRASWRGTEVAVKKLGDEVLTDEDKVRAFRDELALFQKIRHPNVVQFLGAVT QSSPMMIVTEYLPKGDLRLFLKGKGALRPIKALRFALDIARGMNYLHENKPAPIIHRD LEPSNILRDDSGHLKVADFGVSKLLTVKEDKPLTCQETSCRYVAPEVFKNGDYDTKVD VFSFALILHEMIEGYPPFSAKQENEVPHAYASRERPPFKAPAKHYAHGLKELIEDCWN EKPAKRPTFRQIITRLESIHNSFSHKKRWKVRPLKCFQNLEAMLKKDHSSPSSHSGSS RSTGGI" CDS complement(join(23390408..23390512,23391042..23391153, 23391548..23391669,23391835..23391920,23392079..23392185, 23392342..23392404,23392833..23392912,23393282..23393402, 23393591..23393676,23394187..23394282,23394367..23394441, 23394531..23394848)) /locus_tag="TCM_029600" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30026.m001500; paralog of Thecc1EG001830t1" /codon_start=1 /product="Integrin-linked protein kinase family protein isoform 1" /protein_id="EOY27879.1" /db_xref="TAIR:AT4G18950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z30" /translation="MENKAAVRFTLGKQSSMAPEKNRAEPDGKEKEEGEEIDGVRLMY LANEGDLDGIRELLGSGIDVNFRDIDDRTALHIAACQAQTDVVSLLLQRGANVESKDR WGSTPLADAIYYKNHDVIKLLEKHGAKPLMAPMHVNHAREVPEYEIDPKELDFTNSVD ITKGTFCRASWRGTEVAVKKLGDEVLTDEDKVRAFRDELALFQKIRHPNVVQFLGAVT QSSPMMIVTEYLPKGDLRLFLKGKGALRPIKALRFALDIARGMNYLHENKPAPIIHRD LEPSNILRDDSGHLKVADFGVSKLLTVKEDKPLTCQETSCRYVAPEVFKNGDYDTKVD VFSFALILHEMIEGYPPFSAKQENEVPHAYASRERPPFKAPAKHYAHGLKELIEDCWN EKPAKRPTFRQIITRLESIHNSFSHKKRWKVRPLKCFQNLEAMLKKDHSSPSSHSGSS RSTGGI" mRNA complement(join(23390485..23390512,23391042..23391153, 23391548..23391703,23391835..23391920,23392079..23392185, 23392342..23392404,23392833..23392912,23393282..23393402, 23393591..23393676,23394187..23394282,23394367..23394441, 23394531..23395258)) /locus_tag="TCM_029600" /product="Integrin-linked protein kinase family isoform 4" /inference="alignment:exonerate- protein:2:ricco:30026.m001500" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001830t1" /inference="similar to AA sequence:ricco:30026.m001500" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc581t7; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc581t13; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6487t2" mRNA complement(join(23390485..23390512,23391042..23391153, 23391548..23391920,23392079..23392185,23392342..23392404, 23392833..23392912,23393282..23393402,23393591..23393676, 23394187..23394282,23394367..23394441,23394531..23395258)) /locus_tag="TCM_029600" /product="Integrin-linked protein kinase family isoform 5" /inference="alignment:exonerate- protein:2:ricco:30026.m001500" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001830t1" /inference="similar to AA sequence:ricco:30026.m001500" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc581t5; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc581t13; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6487t2" CDS complement(join(23390964..23391153,23391548..23391669, 23391835..23391920,23392079..23392185,23392342..23392404, 23392833..23392912,23393282..23393402,23393591..23393676, 23394187..23394282,23394367..23394441,23394531..23394848)) /locus_tag="TCM_029600" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30026.m001500; paralog of Thecc1EG001830t1" /codon_start=1 /product="Integrin-linked protein kinase family protein isoform 3" /protein_id="EOY27880.1" /db_xref="TAIR:AT4G18950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z30" /translation="MENKAAVRFTLGKQSSMAPEKNRAEPDGKEKEEGEEIDGVRLMY LANEGDLDGIRELLGSGIDVNFRDIDDRTALHIAACQAQTDVVSLLLQRGANVESKDR WGSTPLADAIYYKNHDVIKLLEKHGAKPLMAPMHVNHAREVPEYEIDPKELDFTNSVD ITKGTFCRASWRGTEVAVKKLGDEVLTDEDKVRAFRDELALFQKIRHPNVVQFLGAVT QSSPMMIVTEYLPKGDLRLFLKGKGALRPIKALRFALDIARGMNYLHENKPAPIIHRD LEPSNILRDDSGHLKVADFGVSKLLTVKEDKPLTCQETSCRYVAPEVFKNGDYDTKVD VFSFALILHEMIEGYPPFSAKQENEVPHAYASRERPPFKAPAKHYAHGLKELIEDCWN EKPAKRPTFRQIITRLESIHNSFSHKKRWKVSSLSPNYISPFCHLHFQRKCMHAS" CDS complement(join(23391698..23391703,23391835..23391920, 23392079..23392185,23392342..23392404,23392833..23392912, 23393282..23393402,23393591..23393676,23394187..23394282, 23394367..23394441,23394531..23394848)) /locus_tag="TCM_029600" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30026.m001500; paralog of Thecc1EG001830t1" /codon_start=1 /product="Integrin-linked protein kinase family isoform 4" /protein_id="EOY27881.1" /db_xref="TAIR:AT4G18950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z30" /translation="MENKAAVRFTLGKQSSMAPEKNRAEPDGKEKEEGEEIDGVRLMY LANEGDLDGIRELLGSGIDVNFRDIDDRTALHIAACQAQTDVVSLLLQRGANVESKDR WGSTPLADAIYYKNHDVIKLLEKHGAKPLMAPMHVNHAREVPEYEIDPKELDFTNSVD ITKGTFCRASWRGTEVAVKKLGDEVLTDEDKVRAFRDELALFQKIRHPNVVQFLGAVT QSSPMMIVTEYLPKGDLRLFLKGKGALRPIKALRFALDIARGMNYLHENKPAPIIHRD LEPSNILRDDSGHLKVADFGVSKLLTVKEDKPLTCQETSCRYVAPEVFKNGDYDTKVD VFSFALILHEA" CDS complement(join(23391793..23391920,23392079..23392185, 23392342..23392404,23392833..23392912,23393282..23393402, 23393591..23393676,23394187..23394282,23394367..23394441, 23394531..23394848)) /locus_tag="TCM_029600" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30026.m001500; paralog of Thecc1EG001830t1" /codon_start=1 /product="Integrin-linked protein kinase family isoform 5" /protein_id="EOY27882.1" /db_xref="TAIR:AT4G18950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z30" /translation="MENKAAVRFTLGKQSSMAPEKNRAEPDGKEKEEGEEIDGVRLMY LANEGDLDGIRELLGSGIDVNFRDIDDRTALHIAACQAQTDVVSLLLQRGANVESKDR WGSTPLADAIYYKNHDVIKLLEKHGAKPLMAPMHVNHAREVPEYEIDPKELDFTNSVD ITKGTFCRASWRGTEVAVKKLGDEVLTDEDKVRAFRDELALFQKIRHPNVVQFLGAVT QSSPMMIVTEYLPKGDLRLFLKGKGALRPIKALRFALDIARGMNYLHENKPAPIIHRD LEPSNILRDDSGHLKVADFGVSKLLTVKEDKPLTCQETSCRYVAPEVFKNGDYDTKVD VFSFALILHEVNFFHASAHMFSK" gene complement(23396955..23401106) /locus_tag="TCM_029601" /note="dbxref CacaoGD:Thecc1EG029601" mRNA complement(join(23396955..23397389,23398396..23398450, 23398578..23398896,23399873..23400005,23400096..23400210, 23400292..23400374,23400453..23401106)) /locus_tag="TCM_029601" /product="RNA ligase/cyclic nucleotide phosphodiesterase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021300001" /inference="similar to AA sequence:Phytozome:GSVIVT01021300001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00214t00001" CDS complement(join(23397184..23397389,23398396..23398450, 23398578..23398896,23399873..23400005,23400096..23400210, 23400292..23400374,23400453..23400555)) /locus_tag="TCM_029601" /codon_start=1 /product="RNA ligase/cyclic nucleotide phosphodiesterase family protein" /protein_id="EOY27883.1" /db_xref="Phytozome:GSVIVT01021300001" /db_xref="TAIR:AT4G18930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJT5" /translation="MSRQIETQHSITRLNQDFLQCAVYDSDDCKARLIGVEHIIFDRL FETLPQEQQKLWHSHAYEIKSGLWVNPRIPEMTRKPELDNLTKTYGKFWCTWQVDRGD RLPVGAPALMMSPQGVKLGKIDPELVRKRDDKYISTEALQGSTSTSFAVMATPEAVVK KDVYSVWALPPEDVRVRVKKLMEGLRSEFGGPQFEPHVTVVGAISLTADDALAKFRSA CDGLKAYTATVERVATGTFFYQCVFLLLHPTREVVEASAHCTGHFGYKSSTPYMPHLS LLYADLTEEEKKKVQEKANILDESIGSLSFQISRLALYKTDTEDKTLKSWEKVAECNL CPN" gene complement(23401216..23407006) /locus_tag="TCM_029602" /note="dbxref CacaoGD:Thecc1EG029602" mRNA complement(join(23401216..23402293,23402424..23402551, 23402685..23403128,23403319..23403536,23403669..23403765, 23403853..23403941,23406527..23407006)) /locus_tag="TCM_029602" /product="Major facilitator superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene24846" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033922t1" /inference="similar to AA sequence:frave:gene24846" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage" CDS complement(join(23401411..23402293,23402424..23402551, 23402685..23403128,23403319..23403536,23403669..23403765, 23403853..23403941,23406527..23406746)) /locus_tag="TCM_029602" /note="dbxref frave:gene24846; paralog of Thecc1EG033922t1" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY27884.1" /db_xref="TAIR:AT1G59740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2C3" /translation="MPRQEEVFCNTIPLTMSATLDTPRCLPTPNRVLRCKSIPRISQE FVSILFQFSLATTRMLSFLNHQRTHTGIQCVTRPSGRLSSYQLWYFLLFPRFILFNLL LEKLEVVEGKVDWKGKAAVKYKHGGMRAALFILVTFAFENMANLHLAVNLVTFFNGIL HFEIADAANALTNFMGTGYILSILFGVLADSYIGRFKTVLISGSIEFLGLALLSVQAH FPSLKPSACNVFDPTSHCEKIKRGDAAFLYIALYLVAAGTGGIKAAVPSHGADQFDEK DSREAKHMSSFFNLLLLAVCLGGAVSLTLIVWVDDHKGWDLGFMVSAIAMVLGVIIAV AGWPLYRIHIVQGTSVIVEIIQVYVAAIRNRNLQLPENPLELYEIDKDKEAAVEADLL PHRNVYRFLDKAAIQTASTAQSPNPWKLCRVTQVENAKIIFGMIPVFACTIIMTLCLA QLQTFSVQQGLTMDTTIVGSFHIPPASLPIIPVGFLIIIVPFYDQIVVPLLRRFTGHP TGITHLQRIGVGLILSSISMAVAAIMEVKRKAVARDHNMLDAIPVLQPLPIRTFWLSF QYFIFGIADMFTYVGLLEFFYSEAPKGLKTVSTCFLWSSMALGYYLSSILVKIVNRAT KDNTNSRGWLAGNNINRNHLNLFYLLLSVLSLANFIVYLFVASRYKYRSECPVVLSGD DKAGDKTEGN" mobile_element 23404525..23404661 /note="source:INTACT164_F159_scaffold_7-int 314 418" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23405884..23406321 /note="source:INTACT164_F159_scaffold_7-int 739 1254" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23407159..23413033) /locus_tag="TCM_029603" /note="dbxref CacaoGD:Thecc1EG029603" mRNA complement(join(23407159..23408093,23409631..23409785, 23409932..23410115,23410350..23410545,23410860..23411098, 23412337..23413033)) /locus_tag="TCM_029603" /product="MAC/Perforin domain-containing protein" /inference="alignment:exonerate- protein:2:ricco:30026.m001496" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019719t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021298001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6483t2" CDS complement(join(23407452..23408093,23409631..23409785, 23409932..23410115,23410350..23410545,23410860..23411098, 23412337..23412636)) /locus_tag="TCM_029603" /note="paralog of Thecc1EG019719t1" /codon_start=1 /product="MAC/Perforin domain-containing protein" /protein_id="EOY27885.1" /db_xref="Phytozome:GSVIVT01021298001" /db_xref="TAIR:AT1G29690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C7N2" /translation="MENPRTRSGSYLSSSSSLDALTTTLNSSIQALGRGFDVTSDIRL LYCKGAPGSRLVQLDENHTNNLVLPGGVIVPNVSDDIQWSMGKDGIERKPVCSFHEMS GYFNEKAGISEHVPLGSFNAMFNFTGSWRVDAAATKSLAMVGYLIPLCMVKLVKPNLI LCEEVRRAVPYSWDPASLASFIENYGTHIVTSATIGGRDVVYVRQHQSSPLSVTDIEN YVKDIGDQRFLDSKGQSSAAPLKYKDKDVTVIFRRRGGDDLEQSHARWAETVQSAPDV INMTFTPIVSLLEGMPGIKHLARAIELYLEYKPPIEDLQYFLDFQIARVWAPEQSKIQ RKEPVCSSLQFSLMGPKLYISPDQVTVGRKPVTGLRLSLEGNKQNRLAIHLQHLVSLP KILQPHWDAHMAIGAPKWQGPEEQDSRWFEPIKWKNFSHVSTAPIEHTDTCIGDLSGV HIVTGAQLGVWDFGSKNVLHLKLLFSKVPGCTIRRSVWDHSPSSLSGRADGSSSSVSN ERTSDDKKEDSSSLVGKLAKIVDSTEMSKGPQDSPGHWLVTGAKLGVDKGKIVLRIKY SLLNY" mobile_element complement(23409083..23409204) /note="source:scaffold_3_CACTA_0396 885 1001" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23416069..23416476 /note="source:scaffold_3_CACTA_0398 3299 3685" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23416088..23416424) /note="source:CACAO_on_SS_E42_scaffold_2 24149 24491" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(23416425..23416567) /note="source:CACAO_hAT_E71_scaffold_1 304 834" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(23416526..23416548) /note="source:CACAO_on_SS_E42_scaffold_2 23391 23472" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(23416549..23416615) /note="source:CACAO_Again_on_E34_scaffold_1 8 74" /mobile_element_type="transposon:TIR/hAT" gene complement(23416905..23418163) /locus_tag="TCM_029604" /note="dbxref CacaoGD:Thecc1EG029604" mRNA complement(23416905..23418163) /locus_tag="TCM_029604" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.20 coverage" CDS complement(23417491..23417895) /locus_tag="TCM_029604" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27886.1" /translation="MGGSSHCKMFTESRGNIISSPHGCKVTFPLQRKVTTVIIPKLSC PFHDRIFFFFLLLPLVCYSFFFSLFFLPWLPERTPVAHLHISIKSRDRDPESNLLNAF EGSIYICLGCLDFWSLDFRILGVKRRSLHSSR" mobile_element 23423291..23424185 /note="source:scaffold_4_CACTA_0511 12870 13840" /mobile_element_type="transposon:TIR/CACTA" gene 23429023..23431087 /locus_tag="TCM_029605" /note="dbxref CacaoGD:Thecc1EG029605" mRNA join(23429023..23429159,23429250..23429374, 23429473..23429683,23429781..23430018,23430123..23430273, 23430473..23431087) /locus_tag="TCM_029605" /product="Leucine-rich repeat transmembrane protein kinase, putative" /inference="alignment:exonerate- protein:2:ricco:30026.m001494" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032036t1" /inference="similar to AA sequence:Phytozome:Glyma13g34140.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1479t1" CDS join(23429123..23429159,23429250..23429374, 23429473..23429683,23429781..23430018,23430123..23430273, 23430473..23430880) /locus_tag="TCM_029605" /note="paralog of Thecc1EG032036t1" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase, putative" /protein_id="EOY27887.1" /db_xref="Phytozome:Glyma13g34140.1" /db_xref="TAIR:AT1G53430.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N8X8" /translation="MGYLRGKESKIEAQKELVSLPGGGIFTYRQLKVATQNFNNANKI GEGGFGAVFKGVLTNGTAIAVKQLSAKSKQGSREFVNEVGVISALQHPNLVKLLGCCI DENQLLLVYEYMENNSLAHALFGPEELRVQLNWTIRSKICRGIAKGLAFLHEESKLKI IHRDIKTTNILLDKDFTAKISDFGFAKLHEGEKTHVITKIAGTTGYMAPEYAMRGHLT SKADVYSFGVVLLEIVSGQNSASYRPNDESVYLLDLAYVLQEKGDLLALVDPILGSEY AAKEAKMILELAMLCTNPSPTLRPSMSEVVKVLKGKSRLNYTPSHAPYSADGFARAKA MASRSFSNYSRSMSREEPSNPASYEFSIKEEEVQISADYTPEVTDETGRSPLNNV" mobile_element 23430301..23430389 /note="source:CACAO_Again_on_E207_scaffold_9 317 405" /mobile_element_type="transposon:TIR/hAT" gene complement(23431244..23444818) /locus_tag="TCM_029606" /note="dbxref CacaoGD:Thecc1EG029606" mRNA complement(join(23431244..23431971,23432193..23432343, 23432894..23433131,23433211..23433421,23433581..23433699, 23434359..23434499,23434837..23435035,23435106..23435482, 23435658..23435698,23435810..23435845,23435957..23436022, 23436614..23436679,23436992..23437060,23437377..23437448, 23437535..23437606,23437745..23437816,23437894..23437965, 23438070..23438141,23438270..23438341,23438486..23438515, 23438608..23438676,23438784..23438855,23441242..23441419, 23441627..23441837,23442455..23442783,23444345..23444818)) /locus_tag="TCM_029606" /product="Leucine-rich repeat transmembrane protein kinase, putative" /inference="alignment:exonerate-protein:2:frave:gene24842" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029608t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021289001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1894t1" CDS complement(join(23431627..23431971,23432193..23432343, 23432894..23433131,23433211..23433421,23433581..23433699, 23434359..23434499,23434837..23435035,23435106..23435482, 23435658..23435698,23435810..23435845,23435957..23436022, 23436614..23436679,23436992..23437060,23437377..23437448, 23437535..23437606,23437745..23437816,23437894..23437965, 23438070..23438141,23438270..23438341,23438486..23438515, 23438608..23438676,23438784..23438855,23441242..23441419, 23441627..23441753)) /locus_tag="TCM_029606" /note="paralog of Thecc1EG029608t1" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase, putative" /protein_id="EOY27888.1" /db_xref="Phytozome:GSVIVT01021289001" /db_xref="TAIR:AT1G07650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9F1" /translation="MRVVKMKRVNDMLGAMFRSGMLVLIIILMAMEAQAGKLPKDEVD ALREIAKELGKKDWVFSVDPCSNHSSWVTPKLQDRPLYNNTVNCSCSFPGDVCHVVSI FLKGQDLPGVLPPSLVKLPHLRFIDLTRNYLNGPIPREWASLKLEFLSLNANRLSGTN LETNLFSGPVPPQLGKLVILENLILSANNLTGQLPRALTSLTKLAELRISSNNFTGRI PDIFQSWKQLKQLEIQASGFQGPIPPSISSLSNLTELRISDLNGGVSQFPYLRNMTSL DKLMLRSCRISGPIPDYLSELPLLRIIDLSFNRFGGNISNLTSIAKMEYLYLTNNSLN GPIPGWIKSANGKSPIDLSYNNFSMDPEPSACRETLNLFKSSFGGKNLQLSGCLDTNP CTKDRFSLAINCGGGRTPVGNIVYEEDYDKGGAAKYVPGTKNWEVSSTGHFWDGNPSS DDYVAHNKSVLKIKDSALYTTARVSPLSLTYYVRCLGNGNYTVKLHFAEIVFRDNSSF YSLGRRLFDVCIQGKRKLKDFDIESAAKGVDKEYIHEFKEVTVNNKTLEIQFYWASKG TTAVPKRATYGPLISAISVKSEFKPPNDRQKKIFIVVGAVGLVLLLVLMILGALWWKG CLWDRISREEELRGLDLKTGIFTLRQIKAATNNFDAANKLGEGGFGSVYKGILLDGTT IAVKQLSSRSRQGNREFVNEIGMISGLQHPNVVRLYGCCAEGNQLLLVYEYMENNSLA HALFGTGEVQLILDWPKRLRICIGIAKGLAFLHDESALKIVHRDIKTANVLLDKDINP KISDFGLARLDEEENTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVAG KNNMKFRPNENYVCLLDWALVLQQKGNLMELLDTKLGSKFNKEEAMRIIRVALLCTNP SPALRPTMSTAVSMLEGHTAVHEISGEPSFHGDDMRFKSFPDYDQVVLQSSETHSIPL LDSMSMKSSSTSAYDL" gene complement(<23433580..23454611) /locus_tag="TCM_029608" /note="dbxref CacaoGD:Thecc1EG029608" mRNA complement(join(<23433580..23433603,23447845..23447940, 23448073..23448219,23448599..23448794,23448872..23449248, 23449437..23449477,23449594..23449629,23449733..23449798, 23450716..23450781,23451247..23451315,23451842..23451913, 23452000..23452071,23452222..23452293,23452387..23452458, 23452549..23452620,23452747..23452818,23452936..23453007, 23453095..23453163,23453259..23453330,23453750..23453936, 23454214..23454611)) /locus_tag="TCM_029608" /product="Leucine-rich repeat transmembrane protein kinase, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene24842" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029610t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021289001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1253t17; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6527t1" CDS complement(join(<23433581..23433603,23447845..23447940, 23448073..23448219,23448599..23448794,23448872..23449248, 23449437..23449477,23449594..23449629,23449733..23449798, 23450716..23450781,23451247..23451315,23451842..23451913, 23452000..23452071,23452222..23452293,23452387..23452458, 23452549..23452620,23452747..23452818,23452936..23453007, 23453095..23453163,23453259..23453330,23453750..23453936, 23454214..23454340)) /locus_tag="TCM_029608" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029610t1" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase, putative isoform 2" /protein_id="EOY27890.1" /db_xref="Phytozome:GSVIVT01021289001" /db_xref="TAIR:AT3G14840.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9F1" /translation="MGSFGGVSMTVFHLMILTLVLMCFRTNNVEAQVEPPLPPDSEME ALNEIAAELGKKGWNFTENPCNNRSSWFTPPPPPNVAGVTNNSTVTCNCSFPNGECHI DGIYLRGQDLNGVLPRSLSKLSYLKTIDLNRNYINGTIPREWATMELELISVSMNRLS GPIPGFLGNITTLVYLSLENNQFSGSIPHELGKLVNLENLILSANFLTGEFPLALSNL SKLTELRISSNNFTGQIPDIFPSWKQLEKLEIQAGGFEGPIPPSLAVLNNLKELRISD LHGEGSKFPNLQNMTNMNRLMLRSCNISGSIPKYIWEYSQLQILDLSFNRLEGKIADS NSLVSTQYMYLTGNLLTGPIPEWLNTRDGRYQIDLSYNNFSESSEQASCRENLNLFKS SSEGKNLGLDKCLKNFPCSKDWYSVHINCGGGATTIGDINYEEDEDAGGPAKYFPIKE TWETSSTGLFWDTSVSAKDYIAQNVSLLRTNNSNLYTTARLSPLSLTYFVRCLANGNY TVTLHFAEIVNRQNSSFRSLGRRIFDVYVQEKRELQDFNIENEAKGVDKEVIRRIKTV VRDKTLAIRFHWAGKGTTGIPKRGTYGPLISAISVDSDFKPPVANDWKRKMKFVVAAA VSVPCLLLVILGILWWKGCFEAKVSREQVLRGLDLQTGFFTFRQMKAATNNFDAANKL GEGGFGSVYK" mobile_element 23440120..23440243 /note="source:CACAO_Helitron_SS_E55_scaffold_6 1 124" /mobile_element_type="transposon:Helitron" mobile_element 23442981..23444535 /note="source:INTACT72F_F343_scaffold_2-int 9102 10966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23444536..23445106) /note="source:scaffold_5_CACTA_0584 7148 7716" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23444671..23445107) /note="source:INTACT1330F_F382_scaffold_8-int 12736 13175" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(23445533..23446130,23446403..23446553, 23447071..23447308,23447495..23447705,23447822..23447940, 23448073..23448219,23448599..23448794,23448872..23449248, 23449437..23449477,23449594..23449629,23449733..23449798, 23450716..23450781,23451247..23451315,23451842..23451913, 23452000..23452071,23452222..23452293,23452387..23452458, 23452549..23452620,23452747..23452818,23452936..23453007, 23453095..23453163,23453259..23453330,23453750..23453936, 23454214..23454611)) /locus_tag="TCM_029608" /product="Leucine-rich repeat transmembrane protein kinase, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene24842" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029610t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021289001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6527t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6527t1" CDS complement(join(23445783..23446130,23446403..23446553, 23447071..23447308,23447495..23447705,23447822..23447940, 23448073..23448219,23448599..23448794,23448872..23449248, 23449437..23449477,23449594..23449629,23449733..23449798, 23450716..23450781,23451247..23451315,23451842..23451913, 23452000..23452071,23452222..23452293,23452387..23452458, 23452549..23452620,23452747..23452818,23452936..23453007, 23453095..23453163,23453259..23453330,23453750..23453936, 23454214..23454340)) /locus_tag="TCM_029608" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029610t1" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase, putative isoform 1" /protein_id="EOY27889.1" /db_xref="Phytozome:GSVIVT01021289001" /db_xref="TAIR:AT1G07650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9F1" /translation="MGSFGGVSMTVFHLMILTLVLMCFRTNNVEAQVEPPLPPDSEME ALNEIAAELGKKGWNFTENPCNNRSSWFTPPPPPNVAGVTNNSTVTCNCSFPNGECHI DGIYLRGQDLNGVLPRSLSKLSYLKTIDLNRNYINGTIPREWATMELELISVSMNRLS GPIPGFLGNITTLVYLSLENNQFSGSIPHELGKLVNLENLILSANFLTGEFPLALSNL SKLTELRISSNNFTGQIPDIFPSWKQLEKLEIQAGGFEGPIPPSLAVLNNLKELRISD LHGEGSKFPNLQNMTNMNRLMLRSCNISGSIPKYIWEYSQLQILDLSFNRLEGKIADS NSLVSTQYMYLTGNLLTGPIPEWLNTRDGRYQIDLSYNNFSESSEQASCRENLNLFKS SSEGKNLGLDKCLKNFPCSKDWYSVHINCGGGATTIGDINYEEDEDAGGPAKYFPIKE TWETSSTGLFWDTSVSAKDYIAQNVSLLRTNNSNLYTTARLSPLSLTYFVRCLANGNY TVTLHFAEIVNRQNSSFRSLGRRIFDVYVQEKRELQDFNIENEAKGVDKEVIRRIKTV VRDKTLAIRFHWAGKGTTGIPKRGTYGPLISAISVDSDFKPPVANDWKRKMKFVVAAA VSVPCLLLVILGILWWKGCFEAKVSREQVLRGLDLQTGFFTFRQMKAATNNFDAANKL GEGGFGSVYKGVLLDGTIIAVKQLSSKSRQGDREFLNELSMIAGLQHPNLVKLYGCCI EGNQLLLVYEYLENNSLYRALFGPNESRSKLDWPTRQKICLGIAKGLAFLHEESSLKI VHRDIKTTNVLLDMDLNAKISDFGLAKFDEEENTHISTRVAGTIGYMAPEYALWGYLT YKADVYSFGIVALETVAGKKNTRYGPEEDFVCLQDWALVLQQKGNLMELVDPSLGGEF NKEEAVRMIKVALLCTNPSPALRPNMSEVVKMLKGRTHVPELIMDPSIFGDELRLGAL RDQFNQMQPRKGGESSTFTHSSDSGVLPGSSSMSF" gene 23455587..23456179 /locus_tag="TCM_029609" /note="dbxref CacaoGD:Thecc1EG029609" mRNA 23455587..23456179 /locus_tag="TCM_029609" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage" CDS 23455617..23455841 /locus_tag="TCM_029609" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27891.1" /translation="MTAWTGKRIHFSQPGQAPNLTGLFYWSAREVSFPTPYTKIPSVA RNSDSGCHIFLHLNNYEKPLNNLEQTLRKS" gene complement(23458293..23466740) /locus_tag="TCM_029610" /note="dbxref CacaoGD:Thecc1EG029610" mRNA complement(join(23458293..23458900,23459158..23459308, 23459758..23459995,23460280..23460430,23460560..23460678, 23460813..23460959,23461333..23461528,23461606..23461982, 23462160..23462200,23462319..23462354,23462460..23462522, 23462936..23463001,23463397..23463465,23464175..23464246, 23464343..23464414,23464557..23464628,23464725..23464796, 23464884..23464929,23465083..23465159,23465404..23465472, 23465577..23465648,23466089..23466269,23466663..23466740)) /locus_tag="TCM_029610" /product="Leucine-rich repeat transmembrane protein kinase, putative" /inference="alignment:exonerate-protein:2:frave:gene24842" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029608t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021289001" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6535t1" CDS complement(join(23458532..23458900,23459158..23459308, 23459758..23459995,23460280..23460430,23460560..23460678, 23460813..23460959,23461333..23461528,23461606..23461982, 23462160..23462200,23462319..23462354,23462460..23462522, 23462936..23463001,23463397..23463465,23464175..23464246, 23464343..23464414,23464557..23464628,23464725..23464796, 23464884..23464929,23465083..23465159,23465404..23465472, 23465577..23465648,23466089..23466269,23466663..23466732)) /locus_tag="TCM_029610" /note="paralog of Thecc1EG029608t1" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase, putative" /protein_id="EOY27892.1" /db_xref="Phytozome:GSVIVT01021289001" /db_xref="TAIR:AT3G14840.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9F1" /translation="MLICMEPNEVEAQVEPLPPPHNEVQALREIAAELGKKDWNFSEN PCSNKSSSFTEPLPPNMPLAINSTVTCSCSPNGECHIDAIYLIGQDLDGVLPRSLVKL PYIKTIQLTLNYLKGTIPREWAALKLEILTLENNLFSGTIPPQLGKLVNLENLLGKFP WGLTKLSNLKELRISSNNFTGKIPNIFQYWKQLEKLEIQASGFEGPIPSSLSVLLNLT ELKISDLPGEGSKFPNLENMKNLYRLMLRSCNISGPIPDYLWAFSRLQILDLSFNKLE GHIFGSESLTKTQYMYLTSNALAGPIPDWVNARDSRFQIDLSYNNLSESSETVCQENL NLFKSFSESKNSGLDDCLKNFPCSKDWYSVHINCGGRATTINGINYEADEDLGGPAKY FPLKEAWETSSTGLFWGTSVGSRDYIAQNVSILRTKNSELYTRARLSPLSLTYYFRCL ANGNYTVTLHFVEIVIRDNRSFRSLGRRIFDVYVQEKLELKDFNIKQEAKGVDKAVIR TFKTVVRNKTLTVRFHWAGKGTTATPRRGTYGPLISAISVDSDFKPPVLNGGNTKMEF EVGAVVSVSCLIFIILSILWWKGYFWHRTLREQDLKGFDLQSGFFTFRQMKAATNNFD AANKIGEGGFGSVYKGILLDGTIIAIKQLSSKSRQGDREFLNELGMISGIQHPNLVRL YGCCVEGGPKESQLTLDWPIRQKICLGIAKGLAFLHEESSLKIVHRDIKTANVLLDKE LNAKISDFGLAKFVEEENTHISTRAAGTMGYMAPEYVLWGYLTYKADVYSFGIVALEI VAGKNNTKYRPEEDFVCLQDWALVLQHKGNLMELVDPRLGSEFNEEEAIRMIKVALLC TNSSPALRPIMSEVVNMLEGRTLVPELIMDSSIFGDELRIGALRDQCNRMQTGKDDET STFRHSSDSTALLGSSLTFVQDASNQS" gene complement(23469473..23471751) /locus_tag="TCM_029611" /note="dbxref CacaoGD:Thecc1EG029611" mRNA complement(join(23469473..23469887,23470143..23470293, 23470838..23471075,23471297..23471507,23471632..23471751)) /locus_tag="TCM_029611" /product="Leucine-rich repeat transmembrane protein kinase" /inference="alignment:exonerate- protein:2:ricco:27894.m000778" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029608t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021291001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1275t14" CDS complement(join(23469519..23469887,23470143..23470293, 23470838..23471075,23471297..23471507,23471632..23471703)) /locus_tag="TCM_029611" /note="paralog of Thecc1EG029608t1" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase" /protein_id="EOY27893.1" /db_xref="Phytozome:GSVIVT01021291001" /db_xref="TAIR:AT1G53440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMD2" /translation="MKAATNNFDAANKVGEGGFGSVYKGLLLDGTIIAIKQLSSKSRQ GDREFLNELGMISGLQHPNLVRLYGCCIEGSQLLLVYEYMENNSLARALFGPKESQLK LDWPARQRICLGIAKGLAFLHEESSLKIVHRDIKTTNVLLDKDLNAKISDFGLAKFDE EENTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGIVALEIVAGKNNTKYRPEEDF VCLQDWALVLQQKGNLMELVDPRLGSEFNEEEAIRMIKVALLCTNSSPALRPIMSEVL NMLEGRALVPELIMDPSIFGDESRFGALRDQLNRMQSGKGSETSTFRHSSDSTEGLGS SSTFVQHPSNQS" gene complement(23486089..23492621) /locus_tag="TCM_029615" /note="dbxref CacaoGD:Thecc1EG029615" mRNA complement(join(23486089..23486159,23486237..23486829, 23487618..23488058,23488544..23488609,23489744..23489815, 23489913..23489984,23490127..23490198,23490291..23490362, 23490450..23490521,23490652..23490723,23490817..23490888, 23490968..23491036,23491143..23491214,23491652..23491868, 23492235..23492621)) /locus_tag="TCM_029615" /product="Leucine-rich repeat transmembrane protein kinase, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029608t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021285001" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS complement(join(23487992..23488058,23488544..23488609, 23489744..23489815,23489913..23489984,23490127..23490198, 23490291..23490362,23490450..23490521,23490652..23490723, 23490817..23490888,23490968..23491036,23491143..23491214, 23491652..23491868,23492235..23492370)) /locus_tag="TCM_029615" /note="paralog of Thecc1EG029608t1" /codon_start=1 /product="Leucine-rich repeat transmembrane protein kinase, putative" /protein_id="EOY27894.1" /db_xref="Phytozome:GSVIVT01021285001" /db_xref="TAIR:AT3G14840.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9F1" /translation="MRRVAKCLSTMKRFGYMVLTVLMLICMETNKVKAQVEPLFPPDN EVVFILFWGCAVQALHEIAAELGKKDWNFNENPCNNKSSWFTPPPPPNIPPAINNSTV TCNCSFPSGECHIDGIYLTGQDLDGVLPRSLVKLPHIKTILLYLNYLKGTIPHEWAAL KLEILVISMNRLSGPIPGYLGQITTLKYLSLENNLFSGTIPPELGKLVNLENLILNAN FLTGEFPLALAKLSNLKELRISSNNFTGKIPNIFQSWKQLEKLEIQASGFEGPIPSSL SVLHNLTELRISDLPGEGSKFPNLQNMKNMYRLMLRSCNISGPIPDYIWEFSQMQILD LSFNKLEGNILDSGNPKTQYMYLTSNSLTGRIPEWLNARDSR" gene complement(23492669..23507591) /locus_tag="TCM_029616" /note="dbxref CacaoGD:Thecc1EG029616" mRNA complement(join(23492669..23492864,23494578..23495459, 23495568..23495718,23495830..23496067,23496215..23496425, 23496510..23496625,23496959..23497099,23497282..23497480, 23497588..23497967,23498600..23498643,23498799..23498846, 23498934..23498996,23499304..23499369,23499739..23499807, 23500718..23500789,23500881..23500952,23501057..23501128, 23501226..23501297,23501383..23501454,23501600..23501671, 23501899..23501970,23502046..23502114,23502231..23502302, 23502633..23502804,23503889..23504488,23507082..23507101, 23507184..23507591)) /locus_tag="TCM_029616" /product="ATP binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g008350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029617t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s06210.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc759t4" mobile_element complement(23493198..23494119) /note="source:CACAO_M_E49279_F74_scaffold_6 1001 1928" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(23494673..23495459,23495567..23495718, 23495830..23496066,23496214..23496425,23496510..23496625, 23496959..23497102,23497282..23497480,23497588..23497967, 23498600..23498643,23498799..23498846,23498934..23498996, 23499304..23499369,23499739..23499807,23500718..23500789, 23500881..23500952,23501057..23501128,23501226..23501297, 23501383..23501454,23501600..23501671)) /locus_tag="TCM_029616" /product="ATP binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g008350.1" /inference="alignment:exonerate- protein:2:ricco:27894.m000778" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029618t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s06210.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6461t2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc759t4" CDS complement(join(23495079..23495459,23495568..23495718, 23495830..23496067,23496215..23496425,23496510..23496625, 23496959..23497099,23497282..23497480,23497588..23497967, 23498600..23498643,23498799..23498846,23498934..23498996, 23499304..23499369,23499739..23499807,23500718..23500789, 23500881..23500952,23501057..23501128,23501226..23501297, 23501383..23501454,23501600..23501671,23501899..23501970, 23502046..23502114,23502231..23502302,23502633..23502804, 23503889..23503982)) /locus_tag="TCM_029616" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029617t1" /codon_start=1 /product="ATP binding protein, putative isoform 1" /protein_id="EOY27895.1" /db_xref="Phytozome:POPTR_0004s06210.1" /db_xref="TAIR:AT1G29750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S8F8" /translation="MVTKKLFVFLIIAVGCFRLLRFAESKVPQEEVDALQEITATMGS TYWKFNGDSCEVEMVGVTQEPPKNSEHEISCERETNSNVCHIVRIVLKRHNLPGMLPP QLVKLPHLREIDFAYNYLNGTLPSEWASMKLTSISVLVNRLSGEIPKHLGNITTLTNL SLEANQFSGAIPPELGNLINLKTLMLSSNQLTGNLPLTFALLRNLTDFRINDNNFNGT IPSFIQKWEQLSRLEMHASGLEGPIPTSISLLSNLVELRISDINGPNQGFPMVRNMTG IVRLVLRNCNIFGEIPAYVWAMKNLEMLDVSFNKLVGKIPTSIRADRLRFVFLSGNML SGDVPDSILKQGTSIDLSYNNFTWQGPEKPVCHENMNLNLNLFRSSSSRNNLRGALPC RKDFTCPQYSNCLHVNCGGKDTRINTNLLYEGDGDVEGGAAKYYIRADGNWGFSSTGD FMDDNDFQNTRYTVSKLSLNISELYTTARRAPISLTYFHYCLENGNYTITLDFAEIQF TTDETYNSLGRRMFDIYVQEKLLWKDFNIESVARSAQKPLVKQVPNVSVTNNFLEIRF YWAGKGTTRIPIRGVYGPLVSAISVVSDFKQCSNGRNKGTAYIIVGVVISCLVFFILG ILWWKRSLLGKYWRKEDTKGDMSSGTFTLKQIKVATDDFNSANKIGEGGFGPVYKGQL PDGTKIAVKQLSSKSRQGNREFLNEIGMISCLQHPNLVKLHGFCVEGDQLLLVYEYME NNSLARALFGPEHNQLELDWATRLKICIGIARGLAFLHEESRLKIVHRDIKATNVLLD SDLNPKISDFGLARLDEEEKTHITTRIAGTIGYMAPEYALWGHLTHKADVYSYGVVVM EIVTGKNNNNFMPSEKFVCLLDWACHLQQTGSLIGLLDERLRSEVKKEEAELVVKVAL LCTNASASLRPTMSEAVSMLEGRMTVPDLIPEPGNYTEDLRFKAMRDLRQQKEDQSSS GSQTQNSTTVHTIYSSSTSHSSNEINPVSRFGT" CDS complement(join(23495413..23495459,23495567..23495718, 23495830..23496066,23496214..23496425,23496510..23496625, 23496959..23497102,23497282..23497480,23497588..23497967, 23498600..23498643,23498799..23498846,23498934..23498996, 23499304..23499369,23499739..23499807,23500718..23500789, 23500881..23500952,23501057..23501128,23501226..23501297, 23501383..23501453)) /locus_tag="TCM_029616" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029618t1" /codon_start=1 /product="ATP binding protein, putative isoform 2" /protein_id="EOY27896.1" /db_xref="Phytozome:POPTR_0004s06210.1" /db_xref="TAIR:AT1G29750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S8F8" /translation="MLSSNQLTGNLPLTFALLRNLTDFRINDNNFNGTIPSFIQKWEQ LSRLEMHASGLEGPIPTSISLLSNLVELRISDINGPNQGFPMVRNMTGIVRLVLRNCN IFGEIPAYVWAMKNLEMLDVSFNKLVGKIPTSIRADRLRFVFLSGNMLSGDVPDSILK QGTSIDLSYNNFTWQGPEKPVCHENMNLNLNLFRSSSSRNNLRGALPCRKDFTCPQYS NCLHVNCGGKDTRINTNLLYEGDGDVEGGAAKYYIRADGNWGFSSTGDFMDDNDFQNT RYTVSKLSLNISELYTTARRAPISLTYFHYCLENGNYTITLDFAEIQFTTDETYNSLG RRMFDIYVQEKLLWKDFNIESVARSAQKPLVKQVPNVSVTNNFLEIRFYWAGKGTTRI PIRGVYGPLVSAISVVSADFKQCSNGRNKGTAYIIVGVVISCLVFFILGILWWKRSLL GKYWRKEDTKGDMSSGTFTLKQIKVATDDFNSANKIGEGGFGPVYKGQLPDGTKIAVK QLSSKSRQGNREFLNEIGMISCLQHPNLVKLHGFCVEGDQLLLVYEYMENNSLARALF GPEHNQLELDWATRLKICIGIARGLAFLHEESRLKIVHRDIKATNVLLDSDLNPKISD FGLARLDEEEKTHITTRIAGTIGYMAPEYALWGHLTHKADVYSYGVVVMEIVTGKNNN NFMPSEKFVCLLDWGMPSPTNWKLDRASR" mobile_element 23505181..23505222 /note="source:CACAO_M_E71580_F115_scaffold_10 306 348" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23505466..23505586) /note="source:scaffold_2_CACTA_0252 7895 8014" /mobile_element_type="transposon:TIR/CACTA" gene complement(23507638..23515541) /locus_tag="TCM_029617" /note="dbxref CacaoGD:Thecc1EG029617" mRNA complement(join(23507638..23508769,23508936..23509086, 23509168..23509405,23509493..23509703,23509795..23509913, 23510180..23510320,23510467..23510662,23510863..23511245, 23511638..23511684,23511837..23511878,23511985..23512047, 23512165..23512230,23512342..23512392,23512850..23512921, 23513013..23513084,23513178..23513249,23513379..23513450, 23513538..23513609,23513753..23513824,23514065..23514136, 23514230..23514298,23514540..23514611,23514736..23514892, 23514983..23515541)) /locus_tag="TCM_029617" /product="Receptor-like kinase in flowers 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g36160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029618t1" /inference="similar to AA sequence:ricco:30026.m001490" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1444t1" mobile_element 23507872..23508276 /note="source:scaffold_9_CACTA_0946 17765 18225" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23508231..23508345) /note="source:scaffold_5_CACTA_0580 5413 5528" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(23508395..23508769,23508936..23509086, 23509168..23509405,23509493..23509703,23509795..23509913, 23510180..23510320,23510467..23510662,23510863..23511245, 23511638..23511684,23511837..23511878,23511985..23512047, 23512165..23512230,23512342..23512392,23512850..23512921, 23513013..23513084,23513178..23513249,23513379..23513450, 23513538..23513609,23513753..23513824,23514065..23514136, 23514230..23514298,23514540..23514611,23514736..23514892, 23514983..23515085)) /locus_tag="TCM_029617" /note="dbxref ricco:30026.m001490; paralog of Thecc1EG029618t1" /codon_start=1 /product="Receptor-like kinase in flowers 1, putative" /protein_id="EOY27897.1" /db_xref="TAIR:AT1G29750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H435" /translation="MFFPKATTLLLSVVLAFSWLDTNKLDAANLPQDEVNILNQIARR MGNSDWNFDADVCNVTENVDRDTGSEKNITCTCQNGTCHVTHVIFKHQSLPGVLPTEL VNLPYLKVIDLAYNYLNGSIPPEWASMQLEFISVFGNRLSGNIPTYLGNISSLTYLDL EANQFSGEVPPEIGKLVNLRTLRLSSNRLSGNLPVQLAQLKNLTDFRINDNNFNGSIP DFIQNWKNLQRLEMQASGLEGPIPSSISALRNLITLIISDINGTNQPFPDLWNMTGIN RIILKKCNIIGQIPQEIWQLSKLRVFLSGELIKVTLPLYLKFLYLTGNKLSGNIPASI LQTGLAVDLSYNNFTWQSPEQPACTQKMDNINLFRSSSTEYLRRGVIPCTSDFKCQQY WHSMYINSGGDNDVKINGTMYVGDAKSGLGGAATLYRNNDNWGFSSTGDFRDDNDELN AASRYLKQSASMPNQLYATARLSPLSLTYYRYCLENGSYTVRLHFAEIEITNNTRYAR LGRRIFNIYIQNELVEEDFNIEAEAGGFLTPLTKHYNVNVTNGEIEIHFYWAGKGTQA IPSRGVHGPLISAISLDPNFKPQHAEKKTKTLPIVVGVLGSFLIFLVSGVLCWRYYFK TKSRREKDLKGLDPQTVSFTLKQIKAATNNFDSVNKIGEGGFGPVYKGQLADGTIIAV KQLSSKSSQGNREFLNEMGIFSCLQHPNLVKLYGCCIEGNQLLLVYEYMENNSLSRAL FGPEYSRINLEWPTRHKICVGIARGLAFLHEESRLKIVHRDIKATNVLLDRDLNPKIS DFGLAKLHEEEKTHISTRIAGTIGYIAPEYALWGYLTYKADVYSFGIVALEIVSGKHN MNYGPDDKHTCLLDWACHLQQSGKLLELVDNQLGSEYNKSEAEGMIKVALLCTNASPS LRPTMSQVVEMLEGTIAIPDAVPNASSYSEDLRFKVIRDHRSSIYSQNFGESQGPSMT YSGSQFESSSTSALNINETNEES" gene complement(23515588..23522021) /locus_tag="TCM_029618" /note="dbxref CacaoGD:Thecc1EG029618" mRNA complement(join(23515588..23516938,23517019..23517169, 23517242..23517479,23517604..23517814,23517913..23518031, 23518242..23518382,23518513..23518711,23518792..23519177, 23519281..23519324,23519580..23519621,23519728..23519787, 23519884..23519949,23520077..23520145,23520296..23520367, 23520464..23520535,23520644..23520715,23520825..23520896, 23520995..23521066,23521212..23521283,23521515..23521586, 23521667..23521735,23521831..23522021)) /locus_tag="TCM_029618" /product="Receptor-like kinase in flowers 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g022540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029617t1" /inference="similar to AA sequence:ricco:30026.m001490" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6443t2" CDS complement(join(23516465..23516938,23517019..23517169, 23517242..23517479,23517604..23517814,23517913..23518031, 23518242..23518382,23518513..23518711,23518792..23519177, 23519281..23519324,23519580..23519621,23519728..23519787, 23519884..23519949,23520077..23520145,23520296..23520367, 23520464..23520535,23520644..23520715,23520825..23520896, 23520995..23521066,23521212..23521283,23521515..23521586, 23521667..23521735,23521831..23521913)) /locus_tag="TCM_029618" /note="dbxref ricco:30026.m001490; paralog of Thecc1EG029617t1" /codon_start=1 /product="Receptor-like kinase in flowers 1, putative" /protein_id="EOY27898.1" /db_xref="TAIR:AT1G29750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FXF2" /translation="MDFRAFKRQNLPGALPSELVDLPYLKEIDFAYNYLSGSIPSEWG SMQLEKISVFGNRLLGRIPSSLGNISTLKYLDLEVNNFSGQVPREFGKLFNLETLRLS SNRLTGNLPSELADLKNLTDFRINDNNLNGSIPDFIHNWNKLDRLEMQGSGHEGPIPS SISALENLEILIISDIDGTSQPFPDLRNMTRIKRIILKKCNISGQIPEYVWDMSDLRI LDLSFNSLNGVLEHVIPPGNFKFLFLTGNNLSGNIPQSILRTGITVDLSYNSFAWQSP QQPACRQLSNINLFRSSSSTNLDEIFQCKNDFQCEEHSHSLYLNCGGDDVKIDGKTYI GDRTFGSGGAATLYRNDDNWGFSSTGDFREDNDELNLQSRFIATVQSPNNLSDLYTTA RLSPLSLTYYQYCLENGNYTLTLHFAEIQFSNNATYGSLGRRMFDIYIQDELIEQDFD IEAEAKGVLTPYTRSYNVSVTNGRIEIRFYWAGKGTQAIPDRGTHGPLISAISLENPN FKHRDAGKKTNVVPIVVGVLGAFTIFLASGILWWRYYFKAKSRREKDLEGLDVQTVSF TLKQIKAATNNFDSANKIGEGGFGPVYKGQLADGTIIAVKQLSSKSSQGNREFMNEIG MISCLQHSNLVKLYGCCIEGDQLLLVYEYLENNSLSRALFGSEKSQMNLDWPTRHKIC TGIARGLAFLHEESRLKIVHRDIKGTNVLLDRDLNPKISDFGLAKLHEEEKTHISTRV AGTIGYIAPEYALWGYLTYKADVYSFGIVALEIVSGKHNMTYGPENKYTCLLDWACNL QQNRKLSELVDEKLGTEFNKAEAEAMIKIALLCTNGSPSLRPTMSEVVGMLEGKIILP ESVPDPGSYSQDLRFKAIRDHHKSMNSQNLGGSQVNSSTSAGSRIEASSDYAYERNEI NEFKAMESQISTSVPSWTGSSITSVSPHDFYDLHPRS" gene complement(23522387..23523511) /locus_tag="TCM_029619" /note="dbxref CacaoGD:Thecc1EG029619" mRNA complement(join(23522387..23522689,23522766..23522928, 23523073..23523511)) /locus_tag="TCM_029619" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029617t1" /note="quality class is strong, express is medium, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6450t1" CDS complement(join(23522548..23522689,23522766..23522928, 23523073..23523211)) /locus_tag="TCM_029619" /note="paralog of Thecc1EG029617t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27899.1" /translation="MISDFLRRCNFARMLFSKAMILLSAVLALSWIGTHKLEAAMLPE DEVNVLNQIARTMGATNWTFDGDDCQKNDTPRVERGFVPEKNVTCHCENETCHVTHFD ERREAVMLRTTYFMKGFGLFVIRKSPMDPSEPSLSFVIKKKTSNS" mobile_element complement(23526370..23526545) /note="source:CACAO_M_S_E145584_F257_scaffold_10 578 753" /mobile_element_type="retrotransposon:LTR/Copia" gene 23526560..23527972 /locus_tag="TCM_029620" /note="dbxref CacaoGD:Thecc1EG029620" mRNA join(23526560..23526976,23527117..23527972) /locus_tag="TCM_029620" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004701t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage" mobile_element 23526564..23526627 /note="source:INTACT566_F257_scaffold_7-int 676 739" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(23526643..23526976,23527117..23527364) /locus_tag="TCM_029620" /note="paralog of Thecc1EG004701t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27900.1" /translation="MACNHFQVAMAKRKMWRISFFTIVWSIWLYRNEMIFEGKLGDLM KVDLIKMRITWWVRFKWSNDNPSIIEIINAPSAVVVTSSKCPSKALLKWECPPKRWFK FNTDCAAKGSSSWANSVGIIIECDSKNEVSWISKPSKAPWRLRQLILQICALRGIVLD WQSQHILCSGNEAANNLAKTGIERLNDHLRVHP" gene 23528934..23532048 /locus_tag="TCM_029621" /note="dbxref CacaoGD:Thecc1EG029621" mRNA join(23528934..23530290,23531191..23532048) /locus_tag="TCM_029621" /product="Adipose-regulatory protein, putative" /inference="alignment:exonerate-protein:2:frave:gene00278" /inference="similar to AA sequence:frave:gene00278" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06271t00001" CDS join(23529244..23530290,23531191..23531676) /locus_tag="TCM_029621" /note="dbxref frave:gene00278" /codon_start=1 /product="Adipose-regulatory protein, putative" /protein_id="EOY27901.1" /db_xref="TAIR:AT1G29760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I340" /translation="MESQNADEEDQFFDALDDFPFYDCLTFDQSDPSTSDLSSTLRRR TFSSRGISSKEPGDSLLEASTVGGRLKTSSREPRYKLYRELKANDNNFEITESARDGL NSALVIEEKSDVESTVTTAKNDQLVDGVRESADSGTELSESLSPCSRLLLFIAGLVIK AIGFQLNLLISFITLPLSLLSCCYMFIIDPFQALRHGRAHLITKLLNLWNSTCGYFCP WMCEWLKDHKSIWNLLFRFGWGMLWATYVGCVLCGLLFTSLVISGIFMRYLVEEPMEI KEMLNFDYTKSSPVAFVPIVSCTSVGCGVKCMKKIDFGKNVGSRVIPPDHKLQVTVSL TLPESEYNRNLGMFQVRVDFLSINGETLASSSHPCMLKFKSEPIRLLLTFFKVAPLVT GYVSEAQTLNLKIRGLNEGIVPTACLRVVLEQRAEYRPGAGIPELYDASLILESELPF IKRIIWYWKRTIFIWVSMTSFMMELLFTLVCCRPILVPKTRTRAGSASSRSTQNSWPA QI" gene complement(23533146..23535647) /locus_tag="TCM_029622" /note="dbxref CacaoGD:Thecc1EG029622" mRNA complement(join(23533146..23533600,23533863..23533924, 23534218..23534415,23534719..23534943,23535200..23535579)) /locus_tag="TCM_029622" /product="NOD26-like intrinsic protein 1,2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30026.m001488" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019213t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021274001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08647t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6557t1" mRNA complement(join(23533230..23533600,23533863..23533924, 23534155..23534415,23534719..23534943,23535200..23535647)) /locus_tag="TCM_029622" /product="NOD26-like intrinsic protein 1,2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30026.m001488" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019213t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021274001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6557t1" CDS complement(join(23533381..23533600,23533863..23533924, 23534218..23534415,23534719..23534943,23535200..23535328)) /locus_tag="TCM_029622" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG019213t1" /codon_start=1 /product="NOD26-like intrinsic protein 1,2 isoform 2" /protein_id="EOY27903.1" /db_xref="Phytozome:GSVIVT01021274001" /db_xref="TAIR:AT4G18910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LFP7" /translation="MAEISGSNGVVLNVNGEANHNPPPSAAKSKGSDIGFSVPFMQKL MAEVLGTYFLIFAGCGSVVVNVNNEKVVSLPGISMVWGLAVMVLVYSVGHISGAHFNP AVTIAFATCKRFPLKQVPAYISAQVLGSTLAAGTLRLLFNGTHDVFFGTSPQGSDLQA FVMEFIITFYLMFIISGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSL GPAIVSNNYKGIWIYLTSPTLGAVSGAWVYNMVRYTDKPLREITKSASFLKSSASRNC S" CDS complement(join(23533381..23533600,23533863..23533924, 23534155..23534415,23534719..23534943,23535200..23535328)) /locus_tag="TCM_029622" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG019213t1" /codon_start=1 /product="NOD26-like intrinsic protein 1,2 isoform 1" /protein_id="EOY27902.1" /db_xref="Phytozome:GSVIVT01021274001" /db_xref="TAIR:AT4G18910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LFP7" /translation="MAEISGSNGVVLNVNGEANHNPPPSAAKSKGSDIGFSVPFMQKL MAEVLGTYFLIFAGCGSVVVNVNNEKVVSLPGISMVWGLAVMVLVYSVGHISGAHFNP AVTIAFATCKRFPLKQVPAYISAQVLGSTLAAGTLRLLFNGTHDVFFGTSPQGSDLQA FVMEFIITFYLMFIISGVATDNRAVSPPSSVFTFIVSFVERKIMEIGELAGLAVGATV LLNVMFAGPITGASMNPARSLGPAIVSNNYKGIWIYLTSPTLGAVSGAWVYNMVRYTD KPLREITKSASFLKSSASRNCS" mobile_element complement(23537255..23537767) /note="source:INTACT639F_F363_scaffold_5-int 8156 8577" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23537607..23538776 /note="source:CACAO_on_E683_scaffold_9 1316 2295" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 23544246..23545558 /locus_tag="TCM_029623" /note="dbxref CacaoGD:Thecc1EG029623" mRNA 23544246..23545558 /locus_tag="TCM_029623" /product="Haloacid dehalogenase hydrolase domain-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029625t1" /inference="similar to AA sequence:ricco:30026.m001487" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS 23544416..23545330 /locus_tag="TCM_029623" /note="dbxref ricco:30026.m001487; paralog of Thecc1EG029625t1" /codon_start=1 /product="Haloacid dehalogenase hydrolase domain-containing protein" /protein_id="EOY27904.1" /db_xref="TAIR:AT5G45700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FK73" /translation="MVFVEFPITIQNQEMPSNKQKCNKGQHYYHKRKRFPGKISSVSI IASINKSIVKCRDHLNKFLSELARMVTPTCRLKGFEILRQEEKTDLETNKVVGHPGLE LEFETSFNIVPPVLVIHRNRLPPMVSDKKGTIVLDLDETLVHSCLDPPPPRYDFIVSR NMDGVTINFYVLKRPGIDEFLETISKKYELVVFTAGHVAYASKVLDTLDPKGLISHRL YRDSCKQVRGRFVKDLSRLGRDLRKTVIVDDNPKSFALQPKNGIPIKPFVGDQLWDNE LMKLTVFFETCNVFEDMRDTVNQYLGTC" gene 23546201..23547884 /locus_tag="TCM_029624" /note="dbxref CacaoGD:Thecc1EG029624" mRNA join(23546201..23546327,23546628..23547884) /locus_tag="TCM_029624" /product="Haloacid dehalogenase hydrolase domain-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029625t1" /inference="similar to AA sequence:ricco:30026.m001487" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(23546287..23546327,23546628..23547741) /locus_tag="TCM_029624" /note="dbxref ricco:30026.m001487; paralog of Thecc1EG029625t1" /codon_start=1 /product="Haloacid dehalogenase hydrolase domain-containing protein" /protein_id="EOY27905.1" /db_xref="TAIR:AT5G45700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FK73" /translation="MYWVTPPGFILRASLQIHHCCTEPGFKTSQAPPSRQVDADIIDS ISFSLNFDVHFPSYLSTQETLSTVEPIDTQNKDMLLRMSKRVQPKSIIRHHHRLLRHC LHLVHYRKGRSSTTKIKSLVVIASIISKSVHECSRRLIKFFSKLARRRHHQSISFLEQ EETLFEAGVDPGLKLEFESSFAMPLVLVLNEHLQLLPPLASDKKRTIVLDLDETLVHS SPDPPPPLYDFTIKPNIDGERMNFYVLKRPGVDEFLEAISKKYEVVVFTAGLEPYAST LLDILDPKGLISHRLYRDSCKQVRGRFVKDLAKMGRDLGKVVMVDDNPKSYYLQPANA IPIKRFEDDVEDRELEKLLGFFERYCDGFDDMRDAVKQYLGGATMRTGQC" mobile_element complement(23547922..23548048) /note="source:scaffold_10_CACTA_0141 2601 2726" /mobile_element_type="transposon:TIR/CACTA" gene 23548286..23552550 /locus_tag="TCM_029625" /note="dbxref CacaoGD:Thecc1EG029625" mRNA join(23548286..23549661,23552405..23552550) /locus_tag="TCM_029625" /product="Haloacid dehalogenase-like hydrolase superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30026.m001487" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029624t1" /inference="similar to AA sequence:ricco:30026.m001487" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10103t00001" CDS 23548607..23549566 /locus_tag="TCM_029625" /note="dbxref ricco:30026.m001487; paralog of Thecc1EG029624t1" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase superfamily protein, putative" /protein_id="EOY27906.1" /db_xref="TAIR:AT5G45700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FK73" /translation="MIILDRPIIVQSPEMVSKIIKRTPPRSIKRHRLNHCRRKTSPAK KNASFSVIASINKSIKTCHRRLVRLFSKLAHIATPSTTKRRHKGFKLLKQEEEFDEFE SNFIVPRALEFDRCLLPPLISETKRTIFLDLDETLVHSSPDPPPKMYDFLVRPHIEGQ FMNFYVLKRPGVDRFLEEISKKYEVVVFTAGLKQYASQVLDKLDPKGLISYRLYRDSC KQVEGKFVKDLSEMGRDLGKVVIVDDNPNAYSLQPENAVPIRPFVEDGEDRELEKLVK FFEWCERFEDMRVAVKQYFSGGGGSGGGSTGGAEDHGFVQLDL" gene complement(23550290..23552645) /locus_tag="TCM_029626" /note="dbxref CacaoGD:Thecc1EG029626" mRNA complement(join(23550290..23550621,23552085..23552645)) /locus_tag="TCM_029626" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s06130.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc7089t1" CDS complement(23552266..23552589) /locus_tag="TCM_029626" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27907.1" /translation="MATASSKLSALFPILFLLLLTLSQSSSSSSSSPDNITGKEPSVS RYRTLLGLQRNTKNQIPSCGEMMSRSQCLQNPKCRWCHSEALDNLCFSKAEAWRLPQQ VFLCD" gene 23552746..23557710 /locus_tag="TCM_029627" /note="dbxref CacaoGD:Thecc1EG029627" mRNA join(23552746..23553133,23553419..23554336, 23554683..23554883,23555435..23555630,23556397..23556573, 23556729..23557710) /locus_tag="TCM_029627" /product="RING/FYVE/PHD-type zinc finger family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g29730.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031936t1" /inference="similar to AA sequence:ricco:30026.m001486" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc304t7" mRNA join(23552863..23553133,23553419..23554336, 23554683..23554883,23555435..23555630,23556424..23556573, 23556729..23556836) /locus_tag="TCM_029627" /product="RING/FYVE/PHD-type zinc finger family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g29730.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031936t1" /inference="similar to AA sequence:ricco:30026.m001486" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc304t7; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc304t7; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc254t10" mRNA join(23552867..23553133,23553419..23554336, 23554683..23554883,23555547..23555630,23556397..23556573, 23556729..23557086) /locus_tag="TCM_029627" /product="RING/FYVE/PHD-type zinc finger family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g29730.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031936t1" /inference="similar to AA sequence:ricco:30026.m001486" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc303t9; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc304t7; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc254t10" CDS join(23553002..23553133,23553419..23554336, 23554683..23554883,23555435..23555630,23556397..23556573, 23556729..23556733) /locus_tag="TCM_029627" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30026.m001486; paralog of Thecc1EG031936t1" /codon_start=1 /product="RING/FYVE/PHD-type zinc finger family protein isoform 1" /protein_id="EOY27908.1" /db_xref="TAIR:AT1G29800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMC6" /translation="MEGSNQSYGFDHNSRVPENQVLDSRVSSLSLKKDTGSRNSDSLA DDNTGLERCDSPSNVSLERQGMNISGECDDGLSVPTKSMEELNDEEKQPNTTYLKPGK YFFYDSPLAEDTGVWIPVSVPPMLEGDHEESARGFRSNGGYFPDGDMGWGEFLGEEKE LTMWDVIVEMILAARGKVNAFTSGDIQRSGISWLSSHLLEQAWQEMSQTLTEANMGSV KEILEAEPPRWLADSAASTCMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPEK FRVADPQRVCDVCCVRLESVQPYLMDQVSNAAQLPTHDLTDLSTLRSWVNFPWGQSME HEIYKATNTIRGYITKVVSLKPEKAIPDSILREAKGLAIISVVKIGAMVTYNIGTGLA IAHRENGSWSPPSAISSFGVGWGAQAGGELTDFIIILRTHDAVKTFSSNAHLSVGAGL SAAVGIVGRAMGADVRAGDGGYAACYTYSCTKGAFVGCSLEGSVVTTRRRENSRFYGS QSITASDILLGSMPRPPAAATLYHALSDLYNTLS" CDS join(23553002..23553133,23553419..23554336, 23554683..23554883,23555435..23555630,23556424..23556573, 23556729..23556733) /locus_tag="TCM_029627" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30026.m001486; paralog of Thecc1EG031936t1" /codon_start=1 /product="RING/FYVE/PHD-type zinc finger family protein isoform 2" /protein_id="EOY27909.1" /db_xref="TAIR:AT1G29800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMC6" /translation="MEGSNQSYGFDHNSRVPENQVLDSRVSSLSLKKDTGSRNSDSLA DDNTGLERCDSPSNVSLERQGMNISGECDDGLSVPTKSMEELNDEEKQPNTTYLKPGK YFFYDSPLAEDTGVWIPVSVPPMLEGDHEESARGFRSNGGYFPDGDMGWGEFLGEEKE LTMWDVIVEMILAARGKVNAFTSGDIQRSGISWLSSHLLEQAWQEMSQTLTEANMGSV KEILEAEPPRWLADSAASTCMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPEK FRVADPQRVCDVCCVRLESVQPYLMDQVSNAAQLPTHDLTDLSTLRSWVNFPWGQSME HEIYKATNTIRGYITKVVSLKPEKAIPDSILREAKGLAIISVVKIGAMVTYNIGTGLA IAHRENGSWSPPSAISSFGVGWGAQAGGELTDFIIILRTHDAVKTFSSNAHLSVGAGL SAAVGIVGRAMGADVRAGDGGYAACYTYSCTKGSVVTTRRRENSRFYGSQSITASDIL LGSMPRPPAAATLYHALSDLYNTLS" CDS join(23553002..23553133,23553419..23554336, 23554683..23554883,23555547..23555630,23556397..23556483) /locus_tag="TCM_029627" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30026.m001486; paralog of Thecc1EG031936t1" /codon_start=1 /product="RING/FYVE/PHD-type zinc finger family protein isoform 3" /protein_id="EOY27910.1" /db_xref="TAIR:AT1G29800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I346" /translation="MEGSNQSYGFDHNSRVPENQVLDSRVSSLSLKKDTGSRNSDSLA DDNTGLERCDSPSNVSLERQGMNISGECDDGLSVPTKSMEELNDEEKQPNTTYLKPGK YFFYDSPLAEDTGVWIPVSVPPMLEGDHEESARGFRSNGGYFPDGDMGWGEFLGEEKE LTMWDVIVEMILAARGKVNAFTSGDIQRSGISWLSSHLLEQAWQEMSQTLTEANMGSV KEILEAEPPRWLADSAASTCMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPEK FRVADPQRVCDVCCVRLESVQPYLMDQVSNAAQLPTHDLTDLSTLRSWVNFPWGQSME HEIYKATNTIRGYITKVVSLKPEKAIPDSILREAKGLAIISVVKIGAMVTYNIGTGLA IAHRENGSWSPPSAISSFGVGWGAQVLLDGQWELMYELVMVVMLLVIHTAALKELLLD VHLKEVLSPLADERIPDSMAASQ" mobile_element 23555973..23556078 /note="source:CACAO_M_E69780_F2_scaffold_9 1551 1652" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23558788..23561951) /locus_tag="TCM_029628" /note="dbxref CacaoGD:Thecc1EG029628" mRNA complement(join(23558788..23559213,23559315..23560078, 23561621..23561951)) /locus_tag="TCM_029628" /product="BES1/BZR1" /inference="alignment:exonerate- protein:2:ricco:30026.m001485" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031955t1" /inference="similar to AA sequence:ricco:30026.m001485" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16556t2" CDS complement(join(23559210..23559213,23559315..23560078, 23561621..23561836)) /locus_tag="TCM_029628" /note="dbxref ricco:30026.m001485; paralog of Thecc1EG031955t1" /codon_start=1 /product="BES1/BZR1" /protein_id="EOY27911.1" /db_xref="TAIR:AT1G78700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMC5" /translation="MTSGTRMPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPK HCDNNEVLKALCNEAGWTVEEDGTTYRKGCKPVDRMDIVGGSASASPCSSYHPSPCAS YNPSPASSSFPSPASSHYTSNANGNGDANSLIPWLKNLTSSSSSASSKLAHHLYIAGG SISAPVTPPLSSPTSRTPRTRNEWDERTAASAWAGQRYSYLPSSTPPSPSRQGFPDSG WLSRLEIPQSGPTSPTFSLVSRNPFGFKDETLSGGGSRMWTPGQSGTCSPAFPAGVDQ TSDVPMSDAIAAEFAFGSNVTGLVKPWEGEKIHEECVADDLELTLGNSKTR" mobile_element complement(23563405..23563614) /note="source:CACAO_Mutator_E39_scaffold_1 5623 5838" /mobile_element_type="transposon:TIR/Mutator" mobile_element 23563693..23564003 /note="source:scaffold_3_CACTA_0377 4933 5247" /mobile_element_type="transposon:TIR/CACTA" gene 23566324..23568903 /locus_tag="TCM_029630" /note="dbxref CacaoGD:Thecc1EG029630" mRNA join(23566324..23566389,23566688..23567618, 23567715..23568903) /locus_tag="TCM_029630" /product="HSF domain class transcription factor" /inference="alignment:exonerate- protein:2:ricco:30026.m001484" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001784t1" /inference="similar to AA sequence:ricco:30026.m001484" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08078t00001" mobile_element complement(23566336..23566371) /note="source:CACAO_M_E24018_F98_scaffold_4 2061 2096" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(23567403..23567618,23567715..23568716) /locus_tag="TCM_029630" /note="dbxref ricco:30026.m001484; paralog of Thecc1EG001784t1" /codon_start=1 /product="HSF domain class transcription factor" /protein_id="EOY27912.1" /db_xref="TAIR:AT4G18880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZJ26" /translation="MDDAQGSSSSLPPFLTKTFEMVDDPSTDSVVSWSASDKSFIVWN PPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFIRGQPHLLKNIHR RKPVHSHSMQNLLGQGASPLTESERQNLTDEIEGLKSEKESLVLELKRHEQERQGFEM QMRLLRERLQHMEQRQQIMVSSVAQVLQKPGFAINLTPQLEANDRKRRLPRIAYLYDE AGIEDNQKGSSQIARENADSTSLSNMEPFEQLESSMVFWENVVHDFGQTNIQLNSNLE LDESTSCAESPAISGMQLSVDAQHKSPGIDMNSEPATVVASEPVTAKEQAAGSTAPAA APAGANDVFWEQFLTENPGSTDMQEVQSERKDSDARKSDSKTGDHGRFCWNMKNVNNL TEKMGHLTPAERT" mobile_element 23569857..23569867 /note="source:CACAO_Again_on_E207_scaffold_9 999 1064" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(23569868..23569923) /note="source:CACAO_M_E1149_F297_scaffold_1 1083 1140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23569881..23569939) /note="source:scaffold_10_CACTA_0130 1133 1194" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23569886..23569951 /note="source:CACAO_M_E14113_F106_scaffold_3 13825 13893" /mobile_element_type="retrotransposon:LTR/Copia" gene 23570096..23573997 /locus_tag="TCM_029631" /note="dbxref CacaoGD:Thecc1EG029631" mRNA join(23570096..23572274,23572818..23572887, 23573665..23573690) /locus_tag="TCM_029631" /product="Pentatricopeptide repeat (PPR-like) superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021268001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002332t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021268001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc659t6" mRNA join(23570102..23572274,23573665..23573997) /locus_tag="TCM_029631" /product="Pentatricopeptide repeat (PPR-like) superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021268001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002332t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021268001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc659t2_C1; alternateUTRof:Thecc1EG029631t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc659t6" mRNA join(23570102..23572274,23573431..23573689) /locus_tag="TCM_029631" /product="Pentatricopeptide repeat (PPR-like) superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021268001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002332t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021268001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc707t2; alternateUTRof:Thecc1EG029631t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc659t6" mRNA join(23570102..23572274,23573431..23573632) /locus_tag="TCM_029631" /product="Pentatricopeptide repeat (PPR-like) superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021268001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002332t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021268001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6500t2; alternateUTRof:Thecc1EG029631t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc659t6" mRNA join(23570102..23572274,23572818..23572887, 23573431..23573627) /locus_tag="TCM_029631" /product="Pentatricopeptide repeat (PPR-like) superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021268001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002332t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021268001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6500t3; alternateUTRof:Thecc1EG029631t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc659t6" CDS 23570280..23571887 /locus_tag="TCM_029631" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002332t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR-like) superfamily protein, putative isoform 1" /protein_id="EOY27913.1" /db_xref="Phytozome:GSVIVT01021268001" /db_xref="TAIR:AT4G18840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49399" /translation="MSGTLSQPPILYFTEMANSVSEIQQAHAHLLKTGLFYNHPLASN KLISFAVNNPDPKTLSYAHSVFTHTTNPNSYSYNSLIRAYANSHTPQNALSLFRQMLQ GPVFPDKYSFTFVLKACAGFGGVQEGRQIHGLVLRMGIGFDVFVANTLIHVYGKGGYF GVARSLLDRMPKRDAVSWNALLSAYIETGYIRLASGLFEEMEERNVESWNFMISGYLS AGLVEEARSVFYRMPVKNVVSWNALITGYAHTSCFGEVLVLFEDMQREKVKPDNCTLV NVLSACAHLGALGQGEWIHSYIDKNAIGINGYIATALVDMYSKCGNIDKALYVFRNAS RKDISTWNSIIVGLGMHGLGEHALEIFSEMLVNGFEPNEVTFIGLLSACSRAGLLNEG HHIFQIMVDDYGIQPTIEHFGCMVDLLGQVGLLEEALDLVKKRPLKEAPVLWESLLSA CKKHGNVEMAEHVARKLLELNPQDSAGYVQLSNTYAALQRWDDVMNVRSKMKALKIKK EPGCSMIEVDGVVHEFLSGEGMILEQI" CDS 23570280..23571887 /locus_tag="TCM_029631" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002332t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR-like) superfamily protein, putative isoform 1" /protein_id="EOY27914.1" /db_xref="Phytozome:GSVIVT01021268001" /db_xref="TAIR:AT4G18840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49399" /translation="MSGTLSQPPILYFTEMANSVSEIQQAHAHLLKTGLFYNHPLASN KLISFAVNNPDPKTLSYAHSVFTHTTNPNSYSYNSLIRAYANSHTPQNALSLFRQMLQ GPVFPDKYSFTFVLKACAGFGGVQEGRQIHGLVLRMGIGFDVFVANTLIHVYGKGGYF GVARSLLDRMPKRDAVSWNALLSAYIETGYIRLASGLFEEMEERNVESWNFMISGYLS AGLVEEARSVFYRMPVKNVVSWNALITGYAHTSCFGEVLVLFEDMQREKVKPDNCTLV NVLSACAHLGALGQGEWIHSYIDKNAIGINGYIATALVDMYSKCGNIDKALYVFRNAS RKDISTWNSIIVGLGMHGLGEHALEIFSEMLVNGFEPNEVTFIGLLSACSRAGLLNEG HHIFQIMVDDYGIQPTIEHFGCMVDLLGQVGLLEEALDLVKKRPLKEAPVLWESLLSA CKKHGNVEMAEHVARKLLELNPQDSAGYVQLSNTYAALQRWDDVMNVRSKMKALKIKK EPGCSMIEVDGVVHEFLSGEGMILEQI" CDS 23570280..23571887 /locus_tag="TCM_029631" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG002332t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR-like) superfamily protein, putative isoform 1" /protein_id="EOY27915.1" /db_xref="Phytozome:GSVIVT01021268001" /db_xref="TAIR:AT4G18840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49399" /translation="MSGTLSQPPILYFTEMANSVSEIQQAHAHLLKTGLFYNHPLASN KLISFAVNNPDPKTLSYAHSVFTHTTNPNSYSYNSLIRAYANSHTPQNALSLFRQMLQ GPVFPDKYSFTFVLKACAGFGGVQEGRQIHGLVLRMGIGFDVFVANTLIHVYGKGGYF GVARSLLDRMPKRDAVSWNALLSAYIETGYIRLASGLFEEMEERNVESWNFMISGYLS AGLVEEARSVFYRMPVKNVVSWNALITGYAHTSCFGEVLVLFEDMQREKVKPDNCTLV NVLSACAHLGALGQGEWIHSYIDKNAIGINGYIATALVDMYSKCGNIDKALYVFRNAS RKDISTWNSIIVGLGMHGLGEHALEIFSEMLVNGFEPNEVTFIGLLSACSRAGLLNEG HHIFQIMVDDYGIQPTIEHFGCMVDLLGQVGLLEEALDLVKKRPLKEAPVLWESLLSA CKKHGNVEMAEHVARKLLELNPQDSAGYVQLSNTYAALQRWDDVMNVRSKMKALKIKK EPGCSMIEVDGVVHEFLSGEGMILEQI" CDS 23570280..23571887 /locus_tag="TCM_029631" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG002332t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR-like) superfamily protein, putative isoform 1" /protein_id="EOY27916.1" /db_xref="Phytozome:GSVIVT01021268001" /db_xref="TAIR:AT4G18840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49399" /translation="MSGTLSQPPILYFTEMANSVSEIQQAHAHLLKTGLFYNHPLASN KLISFAVNNPDPKTLSYAHSVFTHTTNPNSYSYNSLIRAYANSHTPQNALSLFRQMLQ GPVFPDKYSFTFVLKACAGFGGVQEGRQIHGLVLRMGIGFDVFVANTLIHVYGKGGYF GVARSLLDRMPKRDAVSWNALLSAYIETGYIRLASGLFEEMEERNVESWNFMISGYLS AGLVEEARSVFYRMPVKNVVSWNALITGYAHTSCFGEVLVLFEDMQREKVKPDNCTLV NVLSACAHLGALGQGEWIHSYIDKNAIGINGYIATALVDMYSKCGNIDKALYVFRNAS RKDISTWNSIIVGLGMHGLGEHALEIFSEMLVNGFEPNEVTFIGLLSACSRAGLLNEG HHIFQIMVDDYGIQPTIEHFGCMVDLLGQVGLLEEALDLVKKRPLKEAPVLWESLLSA CKKHGNVEMAEHVARKLLELNPQDSAGYVQLSNTYAALQRWDDVMNVRSKMKALKIKK EPGCSMIEVDGVVHEFLSGEGMILEQI" CDS 23570280..23571887 /locus_tag="TCM_029631" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG002332t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR-like) superfamily protein, putative isoform 1" /protein_id="EOY27917.1" /db_xref="Phytozome:GSVIVT01021268001" /db_xref="TAIR:AT4G18840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49399" /translation="MSGTLSQPPILYFTEMANSVSEIQQAHAHLLKTGLFYNHPLASN KLISFAVNNPDPKTLSYAHSVFTHTTNPNSYSYNSLIRAYANSHTPQNALSLFRQMLQ GPVFPDKYSFTFVLKACAGFGGVQEGRQIHGLVLRMGIGFDVFVANTLIHVYGKGGYF GVARSLLDRMPKRDAVSWNALLSAYIETGYIRLASGLFEEMEERNVESWNFMISGYLS AGLVEEARSVFYRMPVKNVVSWNALITGYAHTSCFGEVLVLFEDMQREKVKPDNCTLV NVLSACAHLGALGQGEWIHSYIDKNAIGINGYIATALVDMYSKCGNIDKALYVFRNAS RKDISTWNSIIVGLGMHGLGEHALEIFSEMLVNGFEPNEVTFIGLLSACSRAGLLNEG HHIFQIMVDDYGIQPTIEHFGCMVDLLGQVGLLEEALDLVKKRPLKEAPVLWESLLSA CKKHGNVEMAEHVARKLLELNPQDSAGYVQLSNTYAALQRWDDVMNVRSKMKALKIKK EPGCSMIEVDGVVHEFLSGEGMILEQI" gene complement(23572384..23574201) /locus_tag="TCM_029632" /note="dbxref CacaoGD:Thecc1EG029632" mRNA complement(23572384..23574201) /locus_tag="TCM_029632" /product="Ovate family protein 5, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s06070.1" /inference="similar to AA sequence:ricco:30026.m001483" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS complement(23572478..23573794) /locus_tag="TCM_029632" /note="dbxref ricco:30026.m001483" /codon_start=1 /product="Ovate family protein 5, putative" /protein_id="EOY27918.1" /db_xref="TAIR:AT4G18830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2E0" /translation="MMKWGRKKSSSSSYSSRLPSLSRVLPTAWLSTFKRMSINSEPKP AKDRQKGMSNAVPGRSSKFAGGGARFYGGDGEAFWRLSFGEDSADGKTSKSLLRSAWY DSDDELDFAPSSCQSCGSNATRTKEKEETQKFSNMACDVKKMKEFRRDTQILPDVNMY KEEKATVVKTPRSRTITEKDLKLKKTNERAMEEKRVKRQNKSGEAQQKSAKSVGKNTL DPEPMRTIPMTERENLKLTGNYQRKHQHLSTMNLRTSNLTTIKEDCSFTAQKLLETDV FSPEKLSKVKVKSDKQRKSLYMSRELPRRRMKQNNKVRVFSPRTASRVEICKIKALED MKKAKLKMKAAKQKTISRRTGLENFAMVKCSFDPEKDFRDSMVEMIMEKRISQPEELE ELLACYLTLNSDAYHDLIIKVFQQVWLDLDQASSDTDLRNEKCSCE" gene 23575306..23578412 /locus_tag="TCM_029633" /note="dbxref CacaoGD:Thecc1EG029633" mRNA join(23575306..23576265,23576576..23577198, 23577387..23577902,23578003..23578412) /locus_tag="TCM_029633" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30026.m001482" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004933t1" /inference="similar to AA sequence:ricco:30026.m001482" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1790t1" CDS join(23575890..23576265,23576576..23577198, 23577387..23577902,23578003..23578131) /locus_tag="TCM_029633" /note="dbxref ricco:30026.m001482; paralog of Thecc1EG004933t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27919.1" /db_xref="TAIR:AT1G17030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GGZ7" /translation="MAKGRKPSSLSLVLGLVVAFLSKNRHAAAENDEYLSAVGDPGMR RDGLRLAIEAWNQCNEVGEEVPQMGSPRAADCFDIYKAAQSKEGKLFTFSSSSSLVLF LLSFQCDIAVKILNITPCTQKWTEKNCSLCNLLPYVLVHRVTEDDNKLGVGDPFLGMQ PNALFDGNLYAANKELYLGSKCQVQDTPNPWHFWMIMLKSGNMDTFAAKCPKNGHKTG PFGPDSRFPCFGEGCMNQPLIYHDYTTLEGPSRTTLKGKFYGSWDLDADLSKGLVGNI SYYSITWEKEIGMGSWIFHHVLRTSTKYPWLMLYLRSDATHGLSGGYHYPTKGMSKII PESPNFEVRFTLNVIKGGGPSSQFYLIDIGSCWKNNGQPCDGDTTSDVTRYCEMIINP NITAWCNANSLDMCPPYHTFPNGTRVHRSETNMFPYAAYHLYCAPGNAEQLEVPYSLC DPYSNPQPQEILQILPHPVWGEYGYPTKQGEGWIGDPRTWELDVGRLSQSLYFYQDPG TPPARRKWMSVDLGTEIFKDPDQIAEWTVSDFDILVPNQ" gene complement(23578275..23585071) /locus_tag="TCM_029634" /note="dbxref CacaoGD:Thecc1EG029634" mRNA complement(join(23578275..23578359,23580346..23580807, 23582035..23582245,23582793..23582886,23584420..23585071)) /locus_tag="TCM_029634" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" mobile_element 23578503..23579217 /note="source:INTACT135F_F90_scaffold_2-int 12870 14000" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23578747..23579780) /note="source:scaffold_2_CACTA_0244 12400 13446" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23579218..23579852 /note="source:CACAO_M_E4753_F17_scaffold_2 7194 7822" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(23580606..23580807,23582035..23582245, 23582793..23582886,23584420..23584476)) /locus_tag="TCM_029634" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27920.1" /translation="MSSRIIVLILRGKFFHLRRGVLDHPASDCPCNLGLVPQLLLGTS GRMVFNKISDCLDSKSVVVQWLGCLAFTQETRVRSPATESFADCFIIGCLPSGKPQIR AHVASYVFLNPPTLRTKPSVISQGVPRDHQGVIKGTFSHSIGIGDSNFAEFQAIHQDS DSSLLLHEPQPSTRKLRVTLLTPFLDY" mobile_element complement(23580967..23581831) /note="source:CACAO_Again_on_S_E16_scaffold_1 1 847" /mobile_element_type="transposon:TIR/hAT" mobile_element 23581815..23581860 /note="source:INTACT160_F4_scaffold_7-int 10293 10342" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(23585508..23588552) /locus_tag="TCM_029635" /note="dbxref CacaoGD:Thecc1EG029635" mRNA complement(23585508..23588552) /locus_tag="TCM_029635" /product="Plant U-box 17" /inference="alignment:exonerate- protein:2:ricco:30026.m001480" /inference="similar to AA sequence:ricco:30026.m001480" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16551t1; inference alignment:Newbler:10:TSA:cgbaL_g06891t00001" CDS complement(23585833..23587992) /locus_tag="TCM_029635" /note="dbxref ricco:30026.m001480" /codon_start=1 /product="Plant U-box 17" /protein_id="EOY27921.1" /db_xref="TAIR:AT1G29340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMC1" /translation="MATAAIFSSLRRRRSPSLEAFLAPVDLTEVTLVQTLAAISSELV SSFSNNVFFFQRRNSRSLVRKIEIFVVFLEYLRDSGSGSMSSLPSTAILCFKELYLLL YRSKIVLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPINDVQLSDDVREQV ELLQKQARKTKLYVDKSDENLRVRFFSFLNEFENGSIPNHVDLRLFFVERLGIRDAKS CRCEIEFLEEQIVNHEGDIEPTASVLNGFVAITRYCRFLLFGFEEDEVQLAFGNQKKP RKGLITREIADTFLTIPKDFCCPISLDLMRDPVIISTGQTYDRSSITRWMEEGHCTCP KTGQMLIHTRLVPNRALRNLIIQWCTAHGIPYDPTETTDASAESFAAALPIKAATEAN RATASHLIQHLANGSQGAQTIAAREIRLLAKTGKENRAFIAEAGAIPHLRKLLSSSNP VAQENSVTAMLNLSIYDKNKSRIMDEEGCLRSIVEVLRLGLTTEARENAAATLFSLSA VHDYKKRIADEGGAVEALAGLLRVGTPRGKKDAVTALFNLSTHTENCARMIEARAVTA LVGALGNEGVAEEAAGALALIVRQPIGAEAVGKEEMAVAGLVAMMRCGTPRGKENAVA ALLELCRSGGSAATERVLKAPSLAGLLQTLLFTGTKRARRKAASLARVFQRCENPPLH FGGLGVGYAFAGNSTTNRDSSFADDVSVPMSISVPVL" gene complement(23591631..23600658) /locus_tag="TCM_029636" /note="dbxref CacaoGD:Thecc1EG029636" mRNA complement(join(23591631..23591927,23593778..23593866, 23594043..23594106,23594426..23595065,23595524..23596081, 23596452..23596671,23597509..23599896,23600351..23600658)) /locus_tag="TCM_029636" /product="AAA-type ATPase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s06860.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s06860.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc312t3; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc322t5_C2" CDS complement(join(23591915..23591927,23593778..23593866, 23594043..23594106,23594426..23595065,23595524..23596081, 23596452..23596671,23597509..23599584)) /locus_tag="TCM_029636" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="AAA-type ATPase family protein isoform 2" /protein_id="EOY27923.1" /db_xref="Phytozome:POPTR_0011s06860.1" /db_xref="TAIR:AT4G18820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1H1" /translation="MTRAVRDRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPIL ADRSIMRDLIVLQRSRSLRDPSASPSSWHSPSVIDLLYKKGDKDAVREGRRSAGVERQ RDGRRLSISSPPIANFASSKVAPGEASVVNEGVPAISDRSSKSGARDSRRIKREESSW RSNRTDLLGENKEPVQEQDGNGLAPDAISGNSGLKDRKSKKLKGKHTHGLQMKTLSEQ LNDLPLDSDDVASSNVHLRGRHVRPEKIGEEPEVSIHGYSSGLNRVKRRKFRGARRAR AAPSSREVGGQNELSVASNSFAQGSVHPKYGMEEEENEYDERNVTRAPRNGCGIPWNW SRIHHRGKTILDIAGRSFSCGLSDSRLRKGGAVSHGRNVPEMPVAFDQSSSSAKSDAE ALPLLIEASGSQYSTENAGWVNDYSGELGIFADNLLKRNVDSDLASEARSGDQRKLGG NHHGRHQNLTQKYMPRTFRDLVGQNLVSQALSNAVMKRKVGFLYVFYGPHGTGKTSCA RIFARALNCQSLEQPKPCGFCNSCISHDMGKSRNIREVGPVSNFDFESIMDLLDNMII SQLPSQYRVFIFDDCDTLSPDCWSAISKVIDRVPRRVVFILVSSSLDILPHIIMSRCQ KFFFPKLKDADIIYTLQWIASREDIEIEKDALKLIASRSDGSLRDAEMTLEQLSLLGQ RISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKSLRVIMETGVEPLALMSQLATV ITDILAGSYDFSKERHRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWL TAALLQLAPDQQYILPFSSADTSSHHSPLPSDVGGRDIARKGGELVELHSNTRGLSTN ARLENLHAGRSGDSETGIIKGINLDRKRHVVAGMAPQQTSTVSADLIRVTARQNLVKN RKGIEEIWLEVLEKIQLSSLKEFLYQEGKLISVSFGAAPTVQLMFSSHMTKSKAEKFR GHILQAFESVLGSPMTIEIRCEVKKDATGFQGLLVLPASRDGPSQMIMDPESSSGNRI PRAGFDDISKRVMRDRDTGVSSQAQLLHPESLEAGRSEIVEIPASPREANDNEHADTI ESNRRGSRVADAAAYRKSTLMSNSGGRKLGELSQSQSIVRSKVSLAHVLQQAEGCQRN GWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRVTRQKLSRLKIRTRRPHSLLKLV SCGKCLSSKSPSLCD" mRNA complement(join(23592711..23593866,23594043..23594106, 23594426..23595065,23595524..23596081,23596452..23596671, 23597509..23599896,23600351..23600627)) /locus_tag="TCM_029636" /product="AAA-type ATPase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s06860.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s06860.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc322t5_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc322t5_C2" mRNA complement(join(23592711..23593866,23594043..23594106, 23594426..23595065,23595524..23596096,23596452..23596671, 23597509..23599896,23600351..23600627)) /locus_tag="TCM_029636" /product="AAA-type ATPase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s06860.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s06860.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc322t1_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc322t5_C2" CDS complement(join(23593774..23593866,23594043..23594106, 23594426..23595065,23595524..23596081,23596452..23596671, 23597509..23599584)) /locus_tag="TCM_029636" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="AAA-type ATPase family protein isoform 1" /protein_id="EOY27922.1" /db_xref="Phytozome:POPTR_0011s06860.1" /db_xref="TAIR:AT4G18820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1H1" /translation="MTRAVRDRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPIL ADRSIMRDLIVLQRSRSLRDPSASPSSWHSPSVIDLLYKKGDKDAVREGRRSAGVERQ RDGRRLSISSPPIANFASSKVAPGEASVVNEGVPAISDRSSKSGARDSRRIKREESSW RSNRTDLLGENKEPVQEQDGNGLAPDAISGNSGLKDRKSKKLKGKHTHGLQMKTLSEQ LNDLPLDSDDVASSNVHLRGRHVRPEKIGEEPEVSIHGYSSGLNRVKRRKFRGARRAR AAPSSREVGGQNELSVASNSFAQGSVHPKYGMEEEENEYDERNVTRAPRNGCGIPWNW SRIHHRGKTILDIAGRSFSCGLSDSRLRKGGAVSHGRNVPEMPVAFDQSSSSAKSDAE ALPLLIEASGSQYSTENAGWVNDYSGELGIFADNLLKRNVDSDLASEARSGDQRKLGG NHHGRHQNLTQKYMPRTFRDLVGQNLVSQALSNAVMKRKVGFLYVFYGPHGTGKTSCA RIFARALNCQSLEQPKPCGFCNSCISHDMGKSRNIREVGPVSNFDFESIMDLLDNMII SQLPSQYRVFIFDDCDTLSPDCWSAISKVIDRVPRRVVFILVSSSLDILPHIIMSRCQ KFFFPKLKDADIIYTLQWIASREDIEIEKDALKLIASRSDGSLRDAEMTLEQLSLLGQ RISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKSLRVIMETGVEPLALMSQLATV ITDILAGSYDFSKERHRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWL TAALLQLAPDQQYILPFSSADTSSHHSPLPSDVGGRDIARKGGELVELHSNTRGLSTN ARLENLHAGRSGDSETGIIKGINLDRKRHVVAGMAPQQTSTVSADLIRVTARQNLVKN RKGIEEIWLEVLEKIQLSSLKEFLYQEGKLISVSFGAAPTVQLMFSSHMTKSKAEKFR GHILQAFESVLGSPMTIEIRCEVKKDATGFQGLLVLPASRDGPSQMIMDPESSSGNRI PRAGFDDISKRVMRDRDTGVSSQAQLLHPESLEAGRSEIVEIPASPREANDNEHADTI ESNRRGSRVADAAAYRKSTLMSNSGGRKLGELSQSQSIVRSKVSLAHVLQQAEGCQRN GWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRVTRQKLSRLKIRTRRPHSLLKLV SCGKCLSSKSPR" CDS complement(join(23593774..23593866,23594043..23594106, 23594426..23595065,23595524..23596096,23596452..23596671, 23597509..23599584)) /locus_tag="TCM_029636" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="AAA-type ATPase family protein isoform 3" /protein_id="EOY27924.1" /db_xref="Phytozome:POPTR_0011s06860.1" /db_xref="TAIR:AT4G18820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1H1" /translation="MTRAVRDRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPIL ADRSIMRDLIVLQRSRSLRDPSASPSSWHSPSVIDLLYKKGDKDAVREGRRSAGVERQ RDGRRLSISSPPIANFASSKVAPGEASVVNEGVPAISDRSSKSGARDSRRIKREESSW RSNRTDLLGENKEPVQEQDGNGLAPDAISGNSGLKDRKSKKLKGKHTHGLQMKTLSEQ LNDLPLDSDDVASSNVHLRGRHVRPEKIGEEPEVSIHGYSSGLNRVKRRKFRGARRAR AAPSSREVGGQNELSVASNSFAQGSVHPKYGMEEEENEYDERNVTRAPRNGCGIPWNW SRIHHRGKTILDIAGRSFSCGLSDSRLRKGGAVSHGRNVPEMPVAFDQSSSSAKSDAE ALPLLIEASGSQYSTENAGWVNDYSGELGIFADNLLKRNVDSDLASEARSGDQRKLGG NHHGRHQNLTQKYMPRTFRDLVGQNLVSQALSNAVMKRKVGFLYVFYGPHGTGKTSCA RIFARALNCQSLEQPKPCGFCNSCISHDMGKSRNIREVGPVSNFDFESIMDLLDNMII SQLPSQYRVFIFDDCDTLSPDCWSAISKVIDRVPRRVVFILVSSSLDILPHIIMSRCQ KFFFPKLKDADIIYTLQWIASREDIEIEKDALKLIASRSDGSLRDAEMTLEQLSLLGQ RISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKSLRVIMETGVEPLALMSQLATV ITDILAGSYDFSKERHRRKFFRRQPYLCNPVSKEDMEKLRQALKTLSEAEKQLRMSND KLTWLTAALLQLAPDQQYILPFSSADTSSHHSPLPSDVGGRDIARKGGELVELHSNTR GLSTNARLENLHAGRSGDSETGIIKGINLDRKRHVVAGMAPQQTSTVSADLIRVTARQ NLVKNRKGIEEIWLEVLEKIQLSSLKEFLYQEGKLISVSFGAAPTVQLMFSSHMTKSK AEKFRGHILQAFESVLGSPMTIEIRCEVKKDATGFQGLLVLPASRDGPSQMIMDPESS SGNRIPRAGFDDISKRVMRDRDTGVSSQAQLLHPESLEAGRSEIVEIPASPREANDNE HADTIESNRRGSRVADAAAYRKSTLMSNSGGRKLGELSQSQSIVRSKVSLAHVLQQAE GCQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRVTRQKLSRLKIRTRRPHS LLKLVSCGKCLSSKSPR" gene complement(23605981..23608835) /locus_tag="TCM_029637" /note="dbxref CacaoGD:Thecc1EG029637" mRNA complement(join(23605981..23606355,23606437..23606556, 23608308..23608430,23608793..23608835)) /locus_tag="TCM_029637" /product="DNA binding protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021263001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032011t1" /inference="similar to AA sequence:ricco:30026.m001476" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13374t00001" CDS complement(join(23606291..23606355,23606437..23606556, 23608308..23608430,23608793..23608829)) /locus_tag="TCM_029637" /note="dbxref ricco:30026.m001476; paralog of Thecc1EG032011t1" /codon_start=1 /product="DNA binding protein, putative" /protein_id="EOY27925.1" /db_xref="TAIR:AT1G53400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S8E3" /translation="MGCSGSKRTRGDEAAKKIRRPKPWKHSEPITRTQLMQMRDEFWD TAPHYGGQKEIWDALRAAAEAELILAQAIIDSAGVIVQNDDLTICYDERGAKYELPKY VLSDPINLTHEN" mobile_element 23609963..23610146 /note="source:CACAO_PIF_E119_scaffold_3 4314 4478" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 23610897..23615283 /locus_tag="TCM_029638" /note="dbxref CacaoGD:Thecc1EG029638" mRNA join(23610897..23611470,23611843..23612108, 23613186..23613301,23614343..23614416,23614503..23614566, 23614654..23615283) /locus_tag="TCM_029638" /product="ER lumen protein retaining receptor family protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G29330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020311t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021262001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc525t6" CDS join(23611380..23611470,23611843..23612108, 23613186..23613301,23614343..23614416,23614503..23614566, 23614654..23614690) /locus_tag="TCM_029638" /note="paralog of Thecc1EG020311t1" /codon_start=1 /product="ER lumen protein retaining receptor family protein" /protein_id="EOY27926.1" /db_xref="Phytozome:GSVIVT01021262001" /db_xref="TAIR:AT1G29330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P35402" /translation="MNIFRFAGDMTHLISILVLLLKIYATKSCSGISLKTQELYALVF LTRYLDLFTDFISVYNTIMKLVFIASSLAIVWCMRMHRVVRRSYDKEIDTFRHYFLIL ASFLLAVLVHEKFTFQEIFWAFSIYLEALAILPQLVLLQRSGNVDNLTGQYVFFLGAY RAFYILNWIYRYFTEQHFSRWIACLSGIVQTALYADFFYYYFISWKNNAKLQLPA" mobile_element complement(23615940..23616543) /note="source:scaffold_2_CACTA_0239 8742 9348" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23617259..23620584) /note="source:scaffold_2_CACTA_0239 4608 7933" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23619810..23626530 /note="source:scaffold_6_CACTA_0716 1 6721" /mobile_element_type="transposon:TIR/CACTA" gene 23620457..23624689 /locus_tag="TCM_029640" /note="dbxref CacaoGD:Thecc1EG029640" mRNA join(23620457..23620914,23621869..23622227, 23622519..23622746,23622833..23623187,23623277..23623404, 23623516..23623651,23624008..23624689) /locus_tag="TCM_029640" /product="SecY protein transport family protein" /inference="alignment:exonerate- protein:2:ricco:30026.m001474" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032006t1" /inference="similar to AA sequence:frave:gene27286" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05367t00001" CDS join(23621884..23622227,23622519..23622746, 23622833..23623187,23623277..23623404,23623516..23623651, 23624008..23624247) /locus_tag="TCM_029640" /note="dbxref frave:gene27286; paralog of Thecc1EG032006t1" /codon_start=1 /product="SecY protein transport family protein" /protein_id="EOY27927.1" /db_xref="TAIR:AT2G34250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9H9S3" /translation="MGGGFRVLHLVRPFLSFLPEVQSADRKVPFREKVIYTVISLFIF LVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKII EVDNSVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIIIQLCF AGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIA MFHLLITRSDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNAR GQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG GQFIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDV AKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGIL LAVTIIYQYFETFEKERASELGFFGF" mobile_element 23626631..23632479 /note="source:scaffold_6_CACTA_0716 6722 12570" /mobile_element_type="transposon:TIR/CACTA" gene 23630417..23632940 /locus_tag="TCM_029641" /note="dbxref CacaoGD:Thecc1EG029641" mRNA join(23630417..23632030,23632229..23632940) /locus_tag="TCM_029641" /product="Intracellular protein transport protein USO1, putative" /inference="alignment:exonerate- protein:2:ricco:30026.m001470" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032001t4" /inference="similar to AA sequence:ricco:30026.m001470" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01867t00001_C2" CDS join(23630627..23632030,23632229..23632369) /locus_tag="TCM_029641" /note="dbxref ricco:30026.m001470; paralog of Thecc1EG032001t4" /codon_start=1 /product="Intracellular protein transport protein USO1, putative" /protein_id="EOY27928.1" /db_xref="TAIR:AT1G29300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GC28" /translation="METIKPKSAFNNNSNSNHKSRLARTFQKVINLRTATKIASSNGI GICVLTSQHKFPQDDSTPDHKLSSNADKHGGDSKVKQKAVLEALVAKVFASVTSIKAA YAELQMAQHPYNSDAIQAADQAVVEELRALSELKRKFLKKELDLSPQVTLMLAEIQEQ QSLMRTYEITIKKLESDVEEKDSGIASLHEQLEGCTAFNKSMEKKLNASGPLSMFDNI QFTTLNPSHFVQVLHCTLRSVRSFVKMMIKEMELAKWDLDAAAKTIEPGAVFAKQSHR CFVFESFVCKTMLDGFNSHDFGLTNNSASKKLDPEQYFNKFKNLKSANPKSYLVQYPN SSFAIFTRTKYLNLVHAKMECSFFGNLNQRKLVTSGGFPDTAFFTAFAEMARRFWLLH CLGFSLHEQVSVFQVKKDSRFSEVYMENVSEESLFSSEINDANVDIRVSFTVVPGFKI GKTVIQSQVYLSPVITPPGRTKRRVGWRVSSALWIKSGWYHLHLDPQPKVEQIERGGA ARIMGE" gene complement(23634603..23639522) /locus_tag="TCM_029642" /note="dbxref CacaoGD:Thecc1EG029642" mRNA complement(join(23634603..23635754,23636228..23636501, 23636601..23638720,23638965..23639522)) /locus_tag="TCM_029642" /product="Trehalose-phosphatase/synthase 7 isoform 4" /inference="alignment:exonerate- protein:2:ricco:30026.m001469" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016556t2" /inference="similar to AA sequence:ricco:30026.m001469" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:PASA:2:TSA:puevd3b028667t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6659t1" mRNA complement(join(23634603..23635272,23635364..23635397, 23635532..23635762,23636228..23636501,23636601..23638720, 23638965..23639522)) /locus_tag="TCM_029642" /product="Trehalose-phosphatase/synthase 7 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30026.m001469" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016556t2" /inference="similar to AA sequence:ricco:30026.m001469" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6659t1" mRNA complement(join(23634704..23635272,23636228..23636501, 23636601..23638834)) /locus_tag="TCM_029642" /product="Trehalose-phosphatase/synthase 7 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30026.m001469" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016556t2" /inference="similar to AA sequence:ricco:30026.m001469" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc423t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6659t1" mRNA complement(join(23634710..23635762,23636228..23636501, 23636601..23638720,23638965..23639179)) /locus_tag="TCM_029642" /product="Trehalose-phosphatase/synthase 7 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30026.m001469" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016556t2" /inference="similar to AA sequence:ricco:30026.m001469" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14368t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6659t1" CDS complement(join(23635133..23635272,23635364..23635397, 23635532..23635762,23636228..23636501,23636601..23638588)) /locus_tag="TCM_029642" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30026.m001469; paralog of Thecc1EG016556t2" /codon_start=1 /product="Trehalose-phosphatase/synthase 7 isoform 1" /protein_id="EOY27929.1" /db_xref="TAIR:AT1G06410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23617" /translation="MMSRSYTNLLDLASGNFPVMGQAREKKRLPRVMTVPGVISELDD DQANSVSSDVPSSVIQDRIIIVANQLPVKAKRRPDNKGWSFSWDDDSLLLQLKDGLPE EMEVLYVGSLKVDVDPNEQDDVSQLLLDRFKCVPAFLPPDILTKFYHGFCKQHLWPLF HYMLPFSANHGGRFDRSLWEAYVAANNIFSQRVIEVINPEDDYVWIHDYHLMVLPTFL RRRFNRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCS RMLGLEYQSKRGYIGLEYYGRTIGIKIMPVGIHMAQIESVLRLADKEWRVGELKQQFE GKTVLLGVDDMDVFKGVNLKLLAMEQLLKQHPKWQGRAVLVQITNPARGRGKDLEEIQ AEIQASCKRINETFGQPGYDPIVFIDRPVSLSERVAYYTVAECVVVTAVRDGMNLTPY EYIVCRQGVSESGSSSESSGPKKSMLVVSEFIGCSPSLSGAIRVNPWNIEATAEAMNE AISMADAEKQLRHEKHYRYVSSHDVAFWSRSFFQDMERTCKEHFRRRCWGIGLSFGFR VVALDPNFRKLSIDHIVSVYLRSKNRAILLDYDGTVMPQTSHNKTPSSEVISIINTLS GDIKNTVFVVSGRGRESLGKWFSPCKKLGIAAEHGYFMRWSTNDEWEICGQTSEFGWK EIAEPVMKLYTEATDGSNIEYKESALVWHHRDADPGFGSSQAKEMLDHLESVLSNEPV AVKSGQFIIEVKPQGVSKGVVAEKIFTTMAENGKQADFVLCIGDDRSDEEMFEIISSA ISSGVLSSNTSVFACTVGQKPSKAKYYLDDPAELGRTPCLTWEEADDSIWRIFHMSSN REGLRGPAGLIHGDTDLNFERDAQITLLPSHG" CDS complement(join(23635240..23635272,23636228..23636501, 23636601..23638588)) /locus_tag="TCM_029642" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30026.m001469; paralog of Thecc1EG016556t2" /codon_start=1 /product="Trehalose-phosphatase/synthase 7 isoform 3" /protein_id="EOY27931.1" /db_xref="TAIR:AT1G06410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23617" /translation="MMSRSYTNLLDLASGNFPVMGQAREKKRLPRVMTVPGVISELDD DQANSVSSDVPSSVIQDRIIIVANQLPVKAKRRPDNKGWSFSWDDDSLLLQLKDGLPE EMEVLYVGSLKVDVDPNEQDDVSQLLLDRFKCVPAFLPPDILTKFYHGFCKQHLWPLF HYMLPFSANHGGRFDRSLWEAYVAANNIFSQRVIEVINPEDDYVWIHDYHLMVLPTFL RRRFNRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCS RMLGLEYQSKRGYIGLEYYGRTIGIKIMPVGIHMAQIESVLRLADKEWRVGELKQQFE GKTVLLGVDDMDVFKGVNLKLLAMEQLLKQHPKWQGRAVLVQITNPARGRGKDLEEIQ AEIQASCKRINETFGQPGYDPIVFIDRPVSLSERVAYYTVAECVVVTAVRDGMNLTPY EYIVCRQGVSESGSSSESSGPKKSMLVVSEFIGCSPSLSGAIRVNPWNIEATAEAMNE AISMADAEKQLRHEKHYRYVSSHDVAFWSRSFFQDMERTCKEHFRRRCWGIGLSFGFR VVALDPNFRKLSIDHIVSVYLRSKNRAILLDYDGTVMPQTSHNKTPSSEVISIINTLS GDIKNTVFVVSGRGRESLGKWFSPCKKLGIAAEHGYFMRWSTNDEWEICGQTSEFGWK EIAEPVMKLYTEATDGSNIEYKESALVWHHRDADPGFGSSQAKEMLDHLESVLSNEPV AVKSGQFIIEVKPQLMTRYGEFFT" CDS complement(join(23635451..23635762,23636228..23636501, 23636601..23638588)) /locus_tag="TCM_029642" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30026.m001469; paralog of Thecc1EG016556t2" /codon_start=1 /product="Trehalose-phosphatase/synthase 7 isoform 2" /protein_id="EOY27930.1" /db_xref="TAIR:AT1G06410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23617" /translation="MMSRSYTNLLDLASGNFPVMGQAREKKRLPRVMTVPGVISELDD DQANSVSSDVPSSVIQDRIIIVANQLPVKAKRRPDNKGWSFSWDDDSLLLQLKDGLPE EMEVLYVGSLKVDVDPNEQDDVSQLLLDRFKCVPAFLPPDILTKFYHGFCKQHLWPLF HYMLPFSANHGGRFDRSLWEAYVAANNIFSQRVIEVINPEDDYVWIHDYHLMVLPTFL RRRFNRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCS RMLGLEYQSKRGYIGLEYYGRTIGIKIMPVGIHMAQIESVLRLADKEWRVGELKQQFE GKTVLLGVDDMDVFKGVNLKLLAMEQLLKQHPKWQGRAVLVQITNPARGRGKDLEEIQ AEIQASCKRINETFGQPGYDPIVFIDRPVSLSERVAYYTVAECVVVTAVRDGMNLTPY EYIVCRQGVSESGSSSESSGPKKSMLVVSEFIGCSPSLSGAIRVNPWNIEATAEAMNE AISMADAEKQLRHEKHYRYVSSHDVAFWSRSFFQDMERTCKEHFRRRCWGIGLSFGFR VVALDPNFRKLSIDHIVSVYLRSKNRAILLDYDGTVMPQTSHNKTPSSEVISIINTLS GDIKNTVFVVSGRGRESLGKWFSPCKKLGIAAEHGYFMRWSTNDEWEICGQTSEFGWK EIAEPVMKLYTEATDGSNIEYKESALVWHHRDADPGFGSSQAKEMLDHLESVLSNEPV AVKSGQFIIEVKPQGVSKGVVAEKIFTTMAENGKQADFVLCIGDDRSDEEMFEIISSA ISSGVLSSNTSVFACTVGQKPSKAKYYLDDPAEVVNMLEALAKASDPEPFSDTGSEGS L" CDS complement(join(23635752..23635754,23636228..23636501, 23636601..23638588)) /locus_tag="TCM_029642" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30026.m001469; paralog of Thecc1EG016556t2" /codon_start=1 /product="Trehalose-phosphatase/synthase 7 isoform 4" /protein_id="EOY27932.1" /db_xref="TAIR:AT1G06410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23617" /translation="MMSRSYTNLLDLASGNFPVMGQAREKKRLPRVMTVPGVISELDD DQANSVSSDVPSSVIQDRIIIVANQLPVKAKRRPDNKGWSFSWDDDSLLLQLKDGLPE EMEVLYVGSLKVDVDPNEQDDVSQLLLDRFKCVPAFLPPDILTKFYHGFCKQHLWPLF HYMLPFSANHGGRFDRSLWEAYVAANNIFSQRVIEVINPEDDYVWIHDYHLMVLPTFL RRRFNRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCS RMLGLEYQSKRGYIGLEYYGRTIGIKIMPVGIHMAQIESVLRLADKEWRVGELKQQFE GKTVLLGVDDMDVFKGVNLKLLAMEQLLKQHPKWQGRAVLVQITNPARGRGKDLEEIQ AEIQASCKRINETFGQPGYDPIVFIDRPVSLSERVAYYTVAECVVVTAVRDGMNLTPY EYIVCRQGVSESGSSSESSGPKKSMLVVSEFIGCSPSLSGAIRVNPWNIEATAEAMNE AISMADAEKQLRHEKHYRYVSSHDVAFWSRSFFQDMERTCKEHFRRRCWGIGLSFGFR VVALDPNFRKLSIDHIVSVYLRSKNRAILLDYDGTVMPQTSHNKTPSSEVISIINTLS GDIKNTVFVVSGRGRESLGKWFSPCKKLGIAAEHGYFMRWSTNDEWEICGQTSEFGWK EIAEPVMKLYTEATDGSNIEYKESALVWHHRDADPGFGSSQAKEMLDHLESVLSNEPV AVKSGQFIIEVKPQ" gene 23641157..23646241 /locus_tag="TCM_029643" /note="dbxref CacaoGD:Thecc1EG029643" mRNA join(23641157..23641698,23642057..23642525, 23642784..23642906,23643054..23643123,23643385..23643509, 23643696..23643911,23644353..23644439,23644561..23644998, 23645091..23645200,23645340..23645445,23645526..23645780, 23645864..23646241) /locus_tag="TCM_029643" /product="Na+/Pi symporter" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05990.1" /inference="similar to AA sequence:ricco:30026.m001468" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2406t1" CDS join(23642373..23642525,23642784..23642906, 23643054..23643123,23643385..23643509,23643696..23643911, 23644353..23644439,23644561..23644998,23645091..23645200, 23645340..23645445,23645526..23645780,23645864..23645989) /locus_tag="TCM_029643" /note="dbxref ricco:30026.m001468" /codon_start=1 /product="Na+/Pi symporter" /protein_id="EOY27933.1" /translation="MSRENENKTAVELATRIVGKWKETYEWIPIFGGFATIALAFSVG ANNLPAPFSTSVGSGALTLLKASIMACAIYVPGAASASNSTVNALFSNFLKESQPTEG FLMWSMVVVLLTATIWLALATYLELPVSSQQSIQGAMLGTVLVTEGFGYLPLWNKNDN HNFNGGGLLWILLEWTFAPSIACLCACFLFAVLKSSLLRHENAKKRILIFLPIDYGIS AGLLCFFIVSQVIGNYVDVNRLTVVIAVAGSALIGALLSLAVVVPLAMKKLAATENYR TSKQNASMKDESVESQVTEGQSSGAKVDDDVDDILKNFMQMRVLETVYEEEERSWASP EVIQESDQVQLVSQCSANTSAEQSTPFKQLLKSTPNRLIQTRNFQRIKKSTPIENAIK FVRDITKSTLSPVLVYDRRTLIRHALAEKYDEIEDYFSFPQLLASCVFALMQSASEIA VIVNPFVAILDVFKHRSKYSGNGEDAGHLQVKWWFRGIGGLVAAMGFFLCGWRLTQCL GGKLTYMSNSRGWASQLSTVAAMIIVAMVNLPVSSVHAFIGSLVGVGIADDLRNVNWK LLCKFLCGWIMTIIFSCGFAYLTFSASIHTPAYAVP" mobile_element complement(23646642..23648508) /note="source:INTACT60_F127_scaffold_9-int 13955 15961" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23650717..23651779 /locus_tag="TCM_029644" /note="dbxref CacaoGD:Thecc1EG029644" mRNA 23650717..23651779 /locus_tag="TCM_029644" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is ortholog weak, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.76 coverage" CDS 23650846..23651193 /locus_tag="TCM_029644" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27934.1" /translation="MAALSYTLFLSCIMIFPMFMPTSTVSAIRIHPPLTPSESPTEEP NSNMLGVHKAPSPQESRGNAFRVLMKGRITPSGPSHRGNAEPIFTRHLLRNNDIISFQ ELTSVPSPGIGHR" gene complement(23655981..23656305) /locus_tag="TCM_029645" /note="dbxref CacaoGD:Thecc1EG029645" mRNA complement(23655981..23656305) /locus_tag="TCM_029645" /product="B-cell lymphoma 6 protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05970.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05970.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g16620t00001" CDS complement(23656015..23656299) /locus_tag="TCM_029645" /codon_start=1 /product="B-cell lymphoma 6 protein, putative" /protein_id="EOY27935.1" /db_xref="Phytozome:POPTR_0004s05970.1" /translation="MARFSYLVLIFLVISASFVPQMESRKLLNRGDSNKNVPSLFASL VLSALPKGTVPASAPSKKGHATLDNEKLFARHLAGIDRILQSVPSPGAGH" gene complement(23662734..23664272) /locus_tag="TCM_029646" /note="dbxref CacaoGD:Thecc1EG029646" mRNA complement(join(23662734..23663290,23663378..23664272)) /locus_tag="TCM_029646" /product="S-domain-2 5, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028769t1" /inference="similar to AA sequence:Phytozome:Sb03g002430.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc3973t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2172t1" CDS complement(join(23663079..23663290,23663378..23663810)) /locus_tag="TCM_029646" /note="paralog of Thecc1EG028769t1" /codon_start=1 /product="S-domain-2 5, putative" /protein_id="EOY27936.1" /db_xref="Phytozome:Sb03g002430.1" /db_xref="TAIR:AT4G32300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XMC4" /translation="MLKDGTIIAVKGLENTGQGIEEFLAKVDTIGNIHHSNLVKLIGY RVEKRLRILVYEYMSRGSLDKWIFHENSNFCLDWKTRKKIVLDIPKGLAYLHGDCRQR IAHLDVKPQNILLDDNFNAKVSDFGLSKLINRDQSQVVTRIREVVRGRKILDYSQPDS DVSLLNLLKKKCLGNRLMNIIDLTSEDLQQHLEEVNAMTMLGLWCVNEDYTRRP" gene complement(23664393..23665882) /locus_tag="TCM_029647" /note="dbxref CacaoGD:Thecc1EG029647" mRNA complement(join(23664393..23664983,23665664..23665882)) /locus_tag="TCM_029647" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(23664544..23664978) /locus_tag="TCM_029647" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27937.1" /translation="MMLVNESNWPVWEASLYPTDTLLLGQVMRENQRLTSRITSVNAS QGLFYLSLNSLGMVAYLMGDKPTQCLTVGPAAEAVALSTPKQVRHLKFVQFIVGGIGF YFQTKGKMNKTALNVSSSATIQFLRLDIDGGLRIYGWNPRDR" mobile_element complement(23665797..23665886) /note="source:scaffold_10_CACTA_0127 10327 10432" /mobile_element_type="transposon:TIR/CACTA" gene 23666127..23674023 /locus_tag="TCM_029648" /note="dbxref CacaoGD:Thecc1EG029648" mRNA join(23666127..23666391,23666642..23666890, 23666980..23667141,23667365..23667415,23667709..23667843, 23668056..23668079,23668228..23668339,23668981..23669109, 23669272..23669321,23669798..23669956,23670045..23670140, 23670221..23670336,23670480..23670603,23671359..23671472, 23671887..23671967,23672987..23674023) /locus_tag="TCM_029648" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05960.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021256001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b028673t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6653t3" mRNA join(23666127..23666391,23666642..23666890, 23666980..23667141,23667365..23667415,23667709..23667843, 23668056..23668079,23668228..23668339,23668984..23669109, 23669272..23669321,23669798..23669956,23670045..23670140, 23670221..23670336,23670480..23670603,23671359..23671472, 23671887..23671967,23672987..23674023) /locus_tag="TCM_029648" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05960.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021256001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6653t3" mRNA join(23666242..23666391,23666642..23666890, 23666980..23667141,23667365..23667415,23667709..23667843, 23668056..23668079,23668228..23668339,23668984..23669109, 23669272..23669321,23669798..23669956,23670045..23670140, 23670221..23670336,23670480..23670603,23671359..23671472, 23671887..23671967,23672077..23672273) /locus_tag="TCM_029648" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05960.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021256001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6653t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6653t3; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc650t9" CDS join(23666326..23666391,23666642..23666890, 23666980..23667141,23667365..23667415,23667709..23667843, 23668056..23668079,23668228..23668339,23668981..23669109, 23669272..23669321,23669798..23669956,23670045..23670140, 23670221..23670336,23670480..23670603,23671359..23671472, 23671887..23671967,23672987..23673133) /locus_tag="TCM_029648" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 3" /protein_id="EOY27940.1" /db_xref="Phytozome:GSVIVT01021256001" /db_xref="TAIR:AT4G18810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2F0" /translation="MESCGSTAISSSSSFSSILSIQGPSSNVGRKFSKNCMHPQHLSC PLPKPFLQLNGRPKCFLYQQRSAYLSSRTYKGPISAEKQSWDLGRFLKTLYFFNGPPS LAKVVEFIIGKLSGPSPEESAKKMETSSFILVAGATGGVGRRVVDNLRKKGLPVKALV RNEEKARRMLAPEIELIVGDITKESTLAPEYFKGVRKVINAASVIIGPKEGDTPDRAK YSQGIKFFEPEIKGASPEMVEYIGMKNLINAVKESAGLRSGKLLFGFEAGQSSKELSW GALDDVVMGGVSESTFQIDWTGGESGKPTGLFKGIVSTANNGGFTSIRTRNFSTPEDL SAYDGLELRLNGDGRRYKLIVRTSTDWDTVGYTTSFDTIGGQWQSICFPFSSLRPVFR ARTASDAPAFDPSNVVSLQLMFSKFEYDGKLNPTFVEGPFELPVSSIRAYIKDPITPR FVHVSSAGVTRPDRPGIDLSKQPPAVRLNKDLGFVLTFKLKGEDLIRESGIPYTIVRP CALTEEPAGADLIFDQGDNIMGKISREEIARICIAALESPYACDKTFEVKSVVPFSEP FTVDPENPPPEKDYNIYFKTLKDGFTGKESLEQSAIAV" CDS join(23666326..23666391,23666642..23666890, 23666980..23667141,23667365..23667415,23667709..23667843, 23668056..23668079,23668228..23668339,23668984..23669109, 23669272..23669321,23669798..23669956,23670045..23670140, 23670221..23670336,23670480..23670603,23671359..23671472, 23671887..23671967,23672987..23673133) /locus_tag="TCM_029648" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /protein_id="EOY27938.1" /db_xref="Phytozome:GSVIVT01021256001" /db_xref="TAIR:AT4G18810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2F0" /translation="MESCGSTAISSSSSFSSILSIQGPSSNVGRKFSKNCMHPQHLSC PLPKPFLQLNGRPKCFLYQQRSAYLSSRTYKGPISAEKQSWDLGRFLKTLYFFNGPPS LAKVVEFIIGKLSGPSPEESAKKMETSSFILVAGATGGVGRRVVDNLRKKGLPVKALV RNEEKARRMLAPEIELIVGDITKESTLAPEYFKGVRKVINAASVIIGPKEGDTPDRAK YSQGIKFFEPEIKGASPEMVEYIGMKNLINAVKESAGLRSGKLLFGFEGQSSKELSWG ALDDVVMGGVSESTFQIDWTGGESGKPTGLFKGIVSTANNGGFTSIRTRNFSTPEDLS AYDGLELRLNGDGRRYKLIVRTSTDWDTVGYTTSFDTIGGQWQSICFPFSSLRPVFRA RTASDAPAFDPSNVVSLQLMFSKFEYDGKLNPTFVEGPFELPVSSIRAYIKDPITPRF VHVSSAGVTRPDRPGIDLSKQPPAVRLNKDLGFVLTFKLKGEDLIRESGIPYTIVRPC ALTEEPAGADLIFDQGDNIMGKISREEIARICIAALESPYACDKTFEVKSVVPFSEPF TVDPENPPPEKDYNIYFKTLKDGFTGKESLEQSAIAV" CDS join(23666326..23666391,23666642..23666890, 23666980..23667141,23667365..23667415,23667709..23667843, 23668056..23668079,23668228..23668339,23668984..23669109, 23669272..23669321,23669798..23669956,23670045..23670140, 23670221..23670336,23670480..23670603,23671359..23671472, 23671887..23671967,23672077..23672094) /locus_tag="TCM_029648" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /protein_id="EOY27939.1" /db_xref="Phytozome:GSVIVT01021256001" /db_xref="TAIR:AT4G18810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2F0" /translation="MESCGSTAISSSSSFSSILSIQGPSSNVGRKFSKNCMHPQHLSC PLPKPFLQLNGRPKCFLYQQRSAYLSSRTYKGPISAEKQSWDLGRFLKTLYFFNGPPS LAKVVEFIIGKLSGPSPEESAKKMETSSFILVAGATGGVGRRVVDNLRKKGLPVKALV RNEEKARRMLAPEIELIVGDITKESTLAPEYFKGVRKVINAASVIIGPKEGDTPDRAK YSQGIKFFEPEIKGASPEMVEYIGMKNLINAVKESAGLRSGKLLFGFEGQSSKELSWG ALDDVVMGGVSESTFQIDWTGGESGKPTGLFKGIVSTANNGGFTSIRTRNFSTPEDLS AYDGLELRLNGDGRRYKLIVRTSTDWDTVGYTTSFDTIGGQWQSICFPFSSLRPVFRA RTASDAPAFDPSNVVSLQLMFSKFEYDGKLNPTFVEGPFELPVSSIRAYIKDPITPRF VHVSSAGVTRPDRPGIDLSKQPPAVRLNKDLGFVLTFKLKGEDLIRESGIPYTIVRPC ALTEEPAGADLIFDQGDNIMGKISREEIARICIAALESPYACDKTFEMGLDT" gene complement(23674352..23676501) /locus_tag="TCM_029650" /note="dbxref CacaoGD:Thecc1EG029650" mRNA complement(join(23674352..23674612,23675761..23675991, 23676078..23676501)) /locus_tag="TCM_029650" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:GSVIVT01021255001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12090t00001" CDS complement(join(23675919..23675991,23676078..23676415)) /locus_tag="TCM_029650" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27941.1" /db_xref="Phytozome:GSVIVT01021255001" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1H7" /translation="MSSSEVFLSSPSLPERSPVKVQLVSKSVSDRLLEKFFDVSQYNF DYEKSGLWSPPVRRSAFLSSPGRIFTEQEMLERLKSVMDRRRSRRYNICFSVRLYTFP VVYNRIHFYFMHFAALEGFTVDLLSIMGTVTSAV" gene complement(23679535..23685782) /locus_tag="TCM_029651" /note="dbxref CacaoGD:Thecc1EG029651" mRNA complement(join(23679535..23680316,23680772..23681131, 23681255..23683099,23683810..23683953,23684216..23684581, 23684708..23685782)) /locus_tag="TCM_029651" /product="Leucine-rich repeat protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01020735001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029671t1" /inference="similar to AA sequence:ricco:29835.m000647" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6626t2" CDS complement(join(23680222..23680316,23680772..23681131, 23681255..23683099,23683810..23683953,23684216..23684581, 23684708..23685326)) /locus_tag="TCM_029651" /note="dbxref ricco:29835.m000647; paralog of Thecc1EG029671t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein" /protein_id="EOY27942.1" /db_xref="TAIR:AT5G46330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1J3" /translation="MDDSCFNFLSLLLIQCFMGSLAVITAANLTTDQYALLEFKDSLD SDTILANNWTSSTSVCNWVGVSCSSSPERVTSLNLRSMDLTGTISPHLGDLSSLLSLD LSGNKLNGYLPSTIYNLSSLQIMDLTSNELSGDFPDDFCRYFPKLEVLHLAFNGFSGS VPSRLGDCTNLRNLSLSNNRFYGFIPRSIGNLTRLKEIRLSGNSLQGAIPWEIGNLFN LEIFAAESNGGLTGGIPASIFNISSLTKLVLFNNSLSGSLPDNMCHHLSKLEVLIISL NEFSGHIPSSIGECSNLQNLSLSTNRFNGTIPRSFGNLTSLKRLSLRENDLTGEIPWE IGNLYSLEILAVQHMRLNGPIPPSIFNISSLKEISLNNNSLSGEIPSMISISNLEELR LWGNNLSGNIPNFISSASKLRILALEENSFFGLIPNTLGNLTFLERLSLASNNLITET STHEWSFLSSLANCRNLRYLNLSFNPLNGILPSSISNLSTSLHFFYASDVKITGSIPR EIGNLSNITTLDLSHNELSGSIPATIGRLRNVQGLLLHGNQLQGSIPPSVCGLERLYN LSLGGNMLHGPIPTCLANLTSLRYLYLDSNKLNSTIPLSLWSLNDILEVDLSSNYLNG SLPLGIEKLKVLTHLNLSRNLLSGEILSSIGELQDLISLDLSNNRFDGYIPESFGDLI SLESLDLSNNNLSGVIPKSLERLSSLNHFNVSFNRLEGEIPSGGPFRNFSAKSFMNNC GLCGSPALQVPPCKSRQSKMTPWHVLKYVLPVVASLILIAIFFILLKRCQKKSINLAV NEDLLPLEKWRRISYSELLQATNGFDECNLLGSGGFGSVYRGTLSDGMNVAIKVFNMH SEDGFKSFDVECEAMRNIFHRNLVKVFSSCSNVDFRALMFEFMPNGNLEKWLYSYNYF LNLLQRIDIMIDVASALEYLHFGCSVPVIHCDLKPSNILLDNDMVAHVGDFGLAKLLG EEDSIRQTKTLATIGYMAPEYGSTGIVSLKGDVYSYGILLMETFTRKKPTDEIFSVEM SLKDWVKNSLSNGTIDEVLDANLLREEEHFIDKVNALSSIMGLALDCTTKLPEERKNM KDVVAILKKIKIKFLKDVEMAYNGEGKIAERNCRFGDDYRAITISDVAVCENNG" gene 23688087..23691591 /locus_tag="TCM_029653" /note="dbxref CacaoGD:Thecc1EG029653" mRNA join(23688087..23688461,23690968..23691591) /locus_tag="TCM_029653" /product="RAB GTPase A1C" /inference="alignment:exonerate- protein:2:ricco:30026.m001462" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008954t1" /inference="similar to AA sequence:ricco:30026.m001462" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11467t00001" CDS join(23688241..23688461,23690968..23691403) /locus_tag="TCM_029653" /note="dbxref ricco:30026.m001462; paralog of Thecc1EG008954t1" /codon_start=1 /product="RAB GTPase A1C" /protein_id="EOY27943.1" /db_xref="TAIR:AT5G45750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P40393" /translation="MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS TIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFE NVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEA TNVENAFAEVLTQIYHIVSKKAMETGDEGAASAVPSKGEKIDVSKDVSAMKKGGCCSS " gene complement(23693151..23694650) /locus_tag="TCM_029654" /note="dbxref CacaoGD:Thecc1EG029654" mRNA complement(join(23693151..23693986,23694070..23694216, 23694328..23694650)) /locus_tag="TCM_029654" /product="WRKY DNA-binding protein 65, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021252001" /inference="similar to AA sequence:Phytozome:POPTR_0011s06990.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc783t1" CDS complement(join(23693419..23693986,23694070..23694216, 23694328..23694473)) /locus_tag="TCM_029654" /codon_start=1 /product="WRKY DNA-binding protein 65, putative" /protein_id="EOY27944.1" /db_xref="Phytozome:POPTR_0011s06990.1" /db_xref="TAIR:AT1G29280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3SAJ9" /translation="MDGSFNKANNPFVSEQQLEENDNVSSENGSESPPSTTFNDMKLA SPKKGRRSIQKRVVSVPIKDVEGSRLKGESAPPSDSWAWRKYGQKPIKGSPYPRFLFS SYDRGYYRCSSSKGCPARKQVERSRMDPSMLVITYSCEHNHPWPASRNNTAAAKQAAA AAAAAAAAAATATETTTTTAVKAEPSTSQPDTEPEFGTEEKFADLTDDSILTTRDEFA WFGEMETTSSTVLESPIFTERDNSVADVAMIFPMREEDESLFADLGELPECSFVFRHQ RNVGPQVGIC" mobile_element 23697588..23697610 /note="source:CACAO_M_S_E6117_F51_scaffold_2 1118 1189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23697611..23697673 /note="source:scaffold_4_CACTA_0497 1197 1262" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23698255..23698586) /note="source:CACAO_LINE_E_91_scaffold_3 238 583" /mobile_element_type="retrotransposon:LINE/L1" gene complement(23699094..23700062) /locus_tag="TCM_029655" /note="dbxref CacaoGD:Thecc1EG029655" mRNA complement(join(23699094..23699522,23699616..23699762, 23699922..23700062)) /locus_tag="TCM_029655" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05910.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05910.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc4175t1" CDS complement(join(23699253..23699522,23699616..23699762, 23699922..23699999)) /locus_tag="TCM_029655" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27945.1" /db_xref="Phytozome:POPTR_0004s05910.1" /db_xref="TAIR:AT1G29270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2F4" /translation="MVTKLQRRTAPRRKLHLLRTLTNSKSVKRSSVVLNVLLHIYKLK VKLEEIQREYQNLMAIKNEYLTLLEHVQIPKQEVKVEKIGEEFVVKVTCNKGGDKLVS ILEAFDELGLNVLQARVSCNHFFSMEAIAVAQDQQTTDIKDVTQAVLKAIEKHGGGEE TLVT" mobile_element 23707454..23707590 /note="source:CACAO_M_E12463_F12_scaffold_3 4557 4640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23712063..23712568) /note="source:INTACT151F_F342_scaffold_2-int 347 852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23712952..23713351 /note="source:INTACT384F_F20_scaffold_3-int 781 1180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23713352..23713943 /note="source:CACAO_M_E69938_F9_scaffold_9 3535 4163" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23713668..23714611) /note="source:CACAO_M_E58877_F5_scaffold_9 6938 7932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23715220..23715497 /note="source:CACAO_M_E69938_F9_scaffold_9 5276 5542" /mobile_element_type="retrotransposon:LTR/Gypsy" assembly_gap 23715498..23725497 /estimated_length=10000 /gap_type="between scaffolds" gene 23727755..23728795 /locus_tag="TCM_029658" /note="dbxref CacaoGD:Thecc1EG029658" mRNA 23727755..23728795 /locus_tag="TCM_029658" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g29280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008922t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05860.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11409t00001" CDS 23727813..23728532 /locus_tag="TCM_029658" /note="paralog of Thecc1EG008922t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27946.1" /db_xref="Phytozome:POPTR_0004s05860.1" /db_xref="TAIR:AT2G42760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2F7" /translation="MESGEIIKLFDSCWFEMEIFKKHLSPSPSTSFEPNPDRQDEENS SKPEFKRTPTLHTRSMSDQLSLSTSFLGNGSFSPDSVLHAPKLHKIISGKEITEEELQ EADGNIQEAPNNKAVTSTRITRRKKGISKSLSDLEFEELKGFMDLGFVFSEEDNKDSR LVEIIPGLQRLGKKEGEEESKEADKAEVSRPYLSEAWEVSGRRRKENPLMNWRVPALG NEIDMKDSLRLWAHTVASTVR" gene 23730052..23730996 /locus_tag="TCM_029659" /note="dbxref CacaoGD:Thecc1EG029659" mRNA 23730052..23730996 /locus_tag="TCM_029659" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05840.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07020.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12009t00001" CDS 23730076..23730696 /locus_tag="TCM_029659" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27947.1" /db_xref="Phytozome:POPTR_0011s07020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B2ZAU1" /translation="MKPNVSVATTDFLCFIHVYKSCFAVFGPLMDGSRKVMESLDSLW FFNNVLTITTLEHKGPLDEDIVKEEVPSKHNTQSTSQDQQNEAPSTEILVPRCPKCGE IAVEFEHRIVQPDPVEEVEFARPTEKSERRRRRRRRKRSKRKVLGELDLGFHGNLASE SWFSEETYGYPNSESQHYTKMPPLNDGLAMKEHLKSWAYAVACTVR" gene 23732787..23736110 /locus_tag="TCM_029660" /note="dbxref CacaoGD:Thecc1EG029660" mRNA join(23732787..23733158,23733274..23733370, 23733474..23733535,23733617..23733679,23733787..23733846, 23734068..23734124,23734454..23734496,23734756..23734833, 23735061..23735539,23735628..23735941) /locus_tag="TCM_029660" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g29250.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021249001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08007t00001" mRNA join(23732936..23733158,23733311..23733370, 23733474..23733535,23733617..23733679,23733787..23733846, 23734068..23734124,23734454..23734496,23734756..23734833, 23735061..23735539,23735628..23736110) /locus_tag="TCM_029660" /product="Transducin/WD40 repeat-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g29250.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021249001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc994t1; inference alignment:Newbler:10:TSA:cgbaB_g08007t00001" mRNA join(23733014..23733158,23733274..23733370, 23733474..23733535,23733617..23733679,23733784..23733846, 23734068..23734124,23734454..23734496,23734756..23734833, 23735061..23735539,23735628..23736104) /locus_tag="TCM_029660" /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g29250.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021249001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6647t2; inference alignment:Newbler:10:TSA:cgbaB_g08007t00001" CDS join(23733063..23733158,23733274..23733370, 23733474..23733535,23733617..23733679,23733784..23733846, 23734068..23734124,23734454..23734496,23734756..23734833, 23735061..23735539,23735628..23735717) /locus_tag="TCM_029660" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /protein_id="EOY27949.1" /db_xref="Phytozome:GSVIVT01021249001" /db_xref="TAIR:AT5G45760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FK67" /translation="MTEARRLKGHKATATCCIASRDRPGLVATSAEDGCVCWFDMRCK DVQFVMEVSNEPISSLCFNSGNENVIYVSTGKEVKCFDVHMLSENSWKPLESYNYNKE EINQQVTCNSKSSFLASADDGGEIKIIDIRQQCVFKTLRNGHTSICSSVQFIPWRPWE VITGGLDTKLITWDFSKGRPSKIVDLGLPDMSSASKAGQCFNPAFVHSIKVPDVDMLD KLGKICVVARGDGVIDVIDMESELASIRPKSSTKSRTGIHSASKCSLPAEGGVADEYG RKWFHLDYSIGGHTAAASCVAFSLFGERGKFLVSGGNDKLVKVWDCSRCLDPGQTGNN ELLHLNINLSKKVNWLCTTPAESDNLVVCDTTKVVKVYTVS" CDS join(23733063..23733158,23733274..23733370, 23733474..23733535,23733617..23733679,23733787..23733846, 23734068..23734124,23734454..23734496,23734756..23734833, 23735061..23735539,23735628..23735717) /locus_tag="TCM_029660" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY27948.1" /db_xref="Phytozome:GSVIVT01021249001" /db_xref="TAIR:AT5G45760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FK67" /translation="MTEARRLKGHKATATCCIASRDRPGLVATSAEDGCVCWFDMRCK DVQFVMEVSNEPISSLCFNSGNENVIYVSTGKEVKCFDVHMLSENSWKPLESYNYNKE EINQVTCNSKSSFLASADDGGEIKIIDIRQQCVFKTLRNGHTSICSSVQFIPWRPWEV ITGGLDTKLITWDFSKGRPSKIVDLGLPDMSSASKAGQCFNPAFVHSIKVPDVDMLDK LGKICVVARGDGVIDVIDMESELASIRPKSSTKSRTGIHSASKCSLPAEGGVADEYGR KWFHLDYSIGGHTAAASCVAFSLFGERGKFLVSGGNDKLVKVWDCSRCLDPGQTGNNE LLHLNINLSKKVNWLCTTPAESDNLVVCDTTKVVKVYTVS" CDS join(23733325..23733370,23733474..23733535, 23733617..23733679,23733787..23733846,23734068..23734124, 23734454..23734496,23734756..23734833,23735061..23735539, 23735628..23735717) /locus_tag="TCM_029660" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 3" /protein_id="EOY27950.1" /db_xref="Phytozome:GSVIVT01021249001" /db_xref="TAIR:AT5G45760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FK67" /translation="MEVSNEPISSLCFNSGNENVIYVSTGKEVKCFDVHMLSENSWKP LESYNYNKEEINQVTCNSKSSFLASADDGGEIKIIDIRQQCVFKTLRNGHTSICSSVQ FIPWRPWEVITGGLDTKLITWDFSKGRPSKIVDLGLPDMSSASKAGQCFNPAFVHSIK VPDVDMLDKLGKICVVARGDGVIDVIDMESELASIRPKSSTKSRTGIHSASKCSLPAE GGVADEYGRKWFHLDYSIGGHTAAASCVAFSLFGERGKFLVSGGNDKLVKVWDCSRCL DPGQTGNNELLHLNINLSKKVNWLCTTPAESDNLVVCDTTKVVKVYTVS" gene 23736317..23743010 /locus_tag="TCM_029661" /note="dbxref CacaoGD:Thecc1EG029661" mRNA join(23736317..23736461,23736649..23737285, 23737648..23737721,23737925..23737976,23738079..23738223, 23738429..23738695,23739001..23739346,23739449..23739712, 23739798..23740010,23740132..23740393,23740484..23740683, 23741077..23741430,23741556..23743010) /locus_tag="TCM_029661" /product="Cellulose synthase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05830.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038407t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07040.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03568t00001" mRNA join(23737071..23737285,23737648..23737722, 23737925..23737976,23738079..23738223,23738429..23738698, 23739001..23739346,23739449..23739712,23739798..23740010, 23740132..23740393,23740484..23740683,23741077..23741430, 23741556..23742379) /locus_tag="TCM_029661" /product="Cellulose synthase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05830.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038407t1" /inference="similar to AA sequence:Phytozome:Glyma08g12400.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6641t1; inference alignment:Newbler:10:TSA:cgbaL_g03568t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc406t1" mRNA join(23737071..23737285,23737648..23737721, 23737922..23737976,23738079..23738223,23738429..23738698, 23739001..23739346,23739449..23739712,23739798..23740010, 23740132..23740393,23740484..23740683,23741077..23741430, 23741556..23742379) /locus_tag="TCM_029661" /product="Cellulose synthase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05830.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038407t1" /inference="similar to AA sequence:Phytozome:Glyma08g12400.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6641t2; alternateUTRof:Thecc1EG029661t2; inference alignment:Newbler:10:TSA:cgbaL_g03568t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc406t1" CDS join(23737108..23737285,23737648..23737721, 23737925..23737976,23738079..23738223,23738429..23738695, 23739001..23739346,23739449..23739712,23739798..23740010, 23740132..23740393,23740484..23740683,23741077..23741430, 23741556..23742143) /locus_tag="TCM_029661" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG038407t1" /codon_start=1 /product="Cellulose synthase family protein isoform 1" /protein_id="EOY27951.1" /db_xref="Phytozome:POPTR_0011s07040.1" /db_xref="TAIR:AT4G18780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1EG93" /translation="MMESGAPVCHTCGEHVGLNANGEAFVACHECNFPICKTCFEYEL KEGRKVCLRCGAPFDENLLDDAEKASGDRSTMAKHLNNSQDVGIHARHISSVSTVDSE MTEDNGNPIWKNRVESWKEKKNKKKKSSTTKVEKEAQVPPEQQMEDKPAADASQPLST IIPIPKSRLSPYRTVIVMRLVILGLFFHYRVTNPVHSAFPLWLTSVICEIWFAFSWVL DQFPKWYPINRETYIDRLSARYEREGEPSELAAVDFFVSTVDPLKEPPLITANTVLSI LALDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQK IDYLKDKVQPSFVKERRAMKRDYEEFKIRINALVAKAQKTPEEGWTMQDGTPWPGNNT RDHPGMIQVFLGYSGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALIRVSAVLT NAPFILNLDCDHYVNNSKAVREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRN TVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSMPSLPKSSSSSCSWCGCCSC CCPGKKAPKDPSELYRDAKREELDAAIFNLREIDNYDEYERSMLISQMSFEKTFGLST VFIESTLMENGGVAESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTG FKMHCRGWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFG GGRLKWLQRLAYVNTIVYPFTSLPLVAYCSLPAICLLTGKFIIPTLSNLASVLFLGLF LSIIVTAVLELRWSGVSIEELWRNEQFWVIGGVSAHLFAVFQGFLKMLAGIDTNFTVT AKAADDADFGELYIVKWTTLLIPPTTLLIVNMVGVVAGFSDALNKGYEAWGPLFGKVF FSFWVILHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVRINPFVNTANSTTVA QSCISIDC" CDS join(23739173..23739346,23739449..23739712, 23739798..23740010,23740132..23740393,23740484..23740683, 23741077..23741430,23741556..23742143) /locus_tag="TCM_029661" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG038407t1" /codon_start=1 /product="Cellulose synthase family protein isoform 2" /protein_id="EOY27952.1" /db_xref="Phytozome:Glyma08g12400.1" /db_xref="TAIR:AT4G18780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1EG93" /translation="MLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKD KVQPSFVKERRAMKRDYEEFKIRINALVAKAQKTPEEGWTMQDGTPWPGNNTRDHPGM IQVFLGYSGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALIRVSAVLTNAPFIL NLDCDHYVNNSKAVREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDV NMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSMPSLPKSSSSSCSWCGCCSCCCPGKK APKDPSELYRDAKREELDAAIFNLREIDNYDEYERSMLISQMSFEKTFGLSTVFIEST LMENGGVAESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCR GWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFGGGRLKW LQRLAYVNTIVYPFTSLPLVAYCSLPAICLLTGKFIIPTLSNLASVLFLGLFLSIIVT AVLELRWSGVSIEELWRNEQFWVIGGVSAHLFAVFQGFLKMLAGIDTNFTVTAKAADD ADFGELYIVKWTTLLIPPTTLLIVNMVGVVAGFSDALNKGYEAWGPLFGKVFFSFWVI LHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVRINPFVNTANSTTVAQSCISI DC" CDS join(23739173..23739346,23739449..23739712, 23739798..23740010,23740132..23740393,23740484..23740683, 23741077..23741430,23741556..23742143) /locus_tag="TCM_029661" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG038407t1" /codon_start=1 /product="Cellulose synthase family protein isoform 2" /protein_id="EOY27953.1" /db_xref="Phytozome:Glyma08g12400.1" /db_xref="TAIR:AT4G18780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1EG93" /translation="MLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKD KVQPSFVKERRAMKRDYEEFKIRINALVAKAQKTPEEGWTMQDGTPWPGNNTRDHPGM IQVFLGYSGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALIRVSAVLTNAPFIL NLDCDHYVNNSKAVREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDV NMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSMPSLPKSSSSSCSWCGCCSCCCPGKK APKDPSELYRDAKREELDAAIFNLREIDNYDEYERSMLISQMSFEKTFGLSTVFIEST LMENGGVAESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCR GWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFGGGRLKW LQRLAYVNTIVYPFTSLPLVAYCSLPAICLLTGKFIIPTLSNLASVLFLGLFLSIIVT AVLELRWSGVSIEELWRNEQFWVIGGVSAHLFAVFQGFLKMLAGIDTNFTVTAKAADD ADFGELYIVKWTTLLIPPTTLLIVNMVGVVAGFSDALNKGYEAWGPLFGKVFFSFWVI LHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVRINPFVNTANSTTVAQSCISI DC" gene complement(23743017..23743722) /locus_tag="TCM_029662" /note="dbxref CacaoGD:Thecc1EG029662" mRNA complement(23743017..23743722) /locus_tag="TCM_029662" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage" CDS complement(23743144..23743416) /locus_tag="TCM_029662" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27954.1" /translation="MINHVCLGILVSSPFRFRKFFFAGKPKAKISRFAREVTVVFRAQ HCLVLWDSPHIKPWNFLTTKRFLPRRNLCYKILGREYKMMATGNEC" gene 23744324..23746321 /locus_tag="TCM_029663" /note="dbxref CacaoGD:Thecc1EG029663" mRNA 23744324..23746321 /locus_tag="TCM_029663" /product="Receptor like protein 51" /inference="alignment:exonerate- protein:2:ricco:30026.m001451" /inference="similar to AA sequence:ricco:30026.m001451" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc680t2" CDS 23744412..23745746 /locus_tag="TCM_029663" /note="dbxref ricco:30026.m001451" /codon_start=1 /product="Receptor like protein 51" /protein_id="EOY27955.1" /db_xref="TAIR:AT4G18760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2G0" /translation="MKPLPPPPFVLFHLFLLCTASSAATTVNATKPATPTTPTLSPTP SPTSSPTPPTTTTPSSSRSTLDPKQIEALQSLDIPTTRDPCIQPSPHNATICDSSKPF RHLISLHLSNCSTDLSLTFTALKSLSSLRSLSFTNCHASPIRFPSDLSLSLTSFSCIR SLRRLSGVWLSRFVNLTDLTVSYTPVNTSGLYVIIGNMHKLKTVTISHANLTGYLPRH VHLNLTHVDLSDNKLKGRIPTSLTLLEDLEYLNLSSNGLNGEIPTEFGDLISLKNLSL ASNSFSGPIPDSMSAIPGLVHVDLSHNQLNGTVPRFFTELKGLKVLNLENNELHGVLP FNASFIKRLAVFKVGGNDNLCYNHSVLSSKMKLGIAPCDKHGLPLSPPPSKESSGDSE NDSSDYDDDGDDSSEKKEHHHGPSKVVLGVAIGLSSIVFLIVFLILLSKWCG" gene complement(23747029..23750612) /locus_tag="TCM_029664" /note="dbxref CacaoGD:Thecc1EG029664" mRNA complement(23747029..23750612) /locus_tag="TCM_029664" /product="Pentatricopeptide, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g29210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007072t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05810.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS complement(23747966..23750590) /locus_tag="TCM_029664" /note="paralog of Thecc1EG007072t1" /codon_start=1 /product="Pentatricopeptide, putative" /protein_id="EOY27956.1" /db_xref="Phytozome:POPTR_0004s05810.1" /db_xref="TAIR:AT4G18750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B2ZAU5" /translation="MAKTAPNLCFSPLNQNQNREESFFKPQNGCFIPKPNSKTTLLSP IFSSYTPIQISATPGKTIDNQVTDYNARIFQFCQLGNLHNAMELLSMSPNSELESKTY CSILQLCADLKSLKDGKKVHSIINSNGVAVDEVLGSKLVSFYVTCGDLKEGRGIFDEM EKKKVFLWNYMLNEYAKFGDFKESIYLFKMMMKKGIEVDSYTFSCILKCLAASGGLKE GERVHGYLLKLGFGSYNSVVNSLITFYFKGKRVESASELFDELIDRDVISWNSMISGY VSNGLAEKGLEVFKEMLYLGIDVDLATIVTVLVGCANSGTLSLGKAVHALAIKACFER KLNFNNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGQSDGAIRLLQQ MEREGVKLDVVAITSVLHACARSGSLENGKDVHDYIKANNVESNLFVCNALMDMYAKC GSMEDANSIFSRMAVKDIISWNTMIGGYSKNCLPNEALKMLAAMLKELKPDSRTLACI LPACASLAALERGKEIHGHILRNGYFSDRHVANALVDLYVKCGVLALARLLFDMISSK DLVSWTVMIAGYGMHGFANEAITTFNEMRDAGIEPDEVSFISILYACSHSGLLEEGWR FFYIMRNDYNIEPKLEHYACMVDLLSRTGNLSKAFHFIERMPIAPDATIWGAVLCGCR IYHDVKLAERVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRVRERIGRKGLRKNP GCSWIEIKGKVNLFVAGDSSHPQSKKIESLLKKLRRKMKGEGYFPKTKYALINADDMQ KEMALCGHSEKLAMAFGLLSLPPSKTIRVTKNLRICGDCHEMAKFMSKETGREIVLRD SNRFHHFKDGYCSCRGFW" gene 23750764..23752670 /locus_tag="TCM_029665" /note="dbxref CacaoGD:Thecc1EG029665" mRNA join(23750764..23751178,23751337..23751386, 23751472..23751818,23751967..23752670) /locus_tag="TCM_029665" /product="Rho termination factor, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021245001" /inference="similar to AA sequence:Phytozome:GSVIVT01021245001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13585t00001_C1" mRNA join(23750782..23750981,23751489..23751818, 23751967..23752490) /locus_tag="TCM_029665" /product="Rho termination factor, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021245001" /inference="similar to AA sequence:Phytozome:GSVIVT01021245001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11172t00001; inference alignment:Newbler:10:TSA:cgbaL_g13585t00001_C1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc301t20" CDS join(23750879..23751178,23751337..23751386, 23751472..23751818,23751967..23752307) /locus_tag="TCM_029665" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Rho termination factor, putative isoform 1" /protein_id="EOY27957.1" /db_xref="Phytozome:GSVIVT01021245001" /db_xref="TAIR:AT4G18740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJN8" /translation="MAAAVLSFQSISHFHSCFPVNKQLKLRKPVLSLTGNNFCDATFF PESQSLCYSFFVFLVVPSVFEGDRSSASKVVLVWVLFCLNNDPLIVTLRCSCKEVPSV PLCLLLPMSWLLPWNLLNLTEIADKSRPFCSLQVTVSSITSDGNRRGSRPRKSSASGR KKEDESKKPPVGNEAPNSSNQEDIIALFRRIQSSISKGETGSAKAKSLSSSKDKSTAE SVLDVLRESRKNVRGIRSNKGGKASRWKSGVPKKIEGMGKKANAATQDFKLLRPPSNF VKRSPVPYPTAPRVKGLEQNNEVVATNEGLKLANIEKLKLTELKDLAKARGIKGYSRF KKSELVRLLRS" CDS join(23750879..23750981,23751489..23751818, 23751967..23752307) /locus_tag="TCM_029665" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Rho termination factor, putative isoform 2" /protein_id="EOY27958.1" /db_xref="Phytozome:GSVIVT01021245001" /db_xref="TAIR:AT4G18740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJN8" /translation="MAAAVLSFQSISHFHSCFPVNKQLKLRKPVLSLTEIADKSRPFC SLQVTVSSITSDGNRRGSRPRKSSASGRKKEDESKKPPVGNEAPNSSNQEDIIALFRR IQSSISKGETGSAKAKSLSSSKDKSTAESVLDVLRESRKNVRGIRSNKGGKASRWKSG VPKKIEGMGKKANAATQDFKLLRPPSNFVKRSPVPYPTAPRVKGLEQNNEVVATNEGL KLANIEKLKLTELKDLAKARGIKGYSRFKKSELVRLLRS" gene complement(23752549..23755303) /locus_tag="TCM_029666" /note="dbxref CacaoGD:Thecc1EG029666" mRNA complement(join(23752549..23752998,23753585..23753780, 23753896..23753938,23754046..23754153,23754265..23754396, 23754997..23755303)) /locus_tag="TCM_029666" /product="Ribosomal protein large subunit 16A" /inference="alignment:exonerate- protein:2:ricco:30026.m001448" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001743t1" /inference="similar to AA sequence:ricco:30026.m001448" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7471t1" CDS complement(join(23752800..23752998,23753585..23753780, 23753896..23753938,23754046..23754153,23754265..23754396, 23754997..23755092)) /locus_tag="TCM_029666" /note="dbxref ricco:30026.m001448; paralog of Thecc1EG001743t1" /codon_start=1 /product="Ribosomal protein large subunit 16A" /protein_id="EOY27959.1" /db_xref="TAIR:AT5G45775.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P62913" /translation="MRASLDWVKDNVTSQVLKEASMMLEQMGDLEKDKVVNWSRDKTL ASPKLLSFKLPSTTQLRLCHSTAALNLLHFAMASEKKLSNPMREIKVQKLVLNISVGE SGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESG LKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVGRR RRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNIGA" gene complement(23755405..23758189) /locus_tag="TCM_029667" /note="dbxref CacaoGD:Thecc1EG029667" mRNA complement(join(23755405..23756208,23756995..23758036, 23758165..23758189)) /locus_tag="TCM_029667" /product="RING/FYVE/PHD zinc finger superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400049561" /inference="similar to AA sequence:ricco:30026.m001447" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc843t1" CDS complement(join(23755989..23756208,23756995..23757866)) /locus_tag="TCM_029667" /note="dbxref ricco:30026.m001447" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative" /protein_id="EOY27960.1" /db_xref="TAIR:AT2G34200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S8B4" /translation="MDQEERGDRVETSENLSQVEEGVSGDSKNPVNGVVSETVIVINA EENVCFSRENADVRLQNDGFGSLKDQEVDYGRGIGPPLIQNDLGSGGHSSSFADRNVL ENEERDLGDKNNGVVSTEVLGEAGGEMFDQETNQMGGVGETTGQVDQGSSRSLNNSVD RFVVETIIVVNTQEATCVDGSNRLEVKDNGLGSSKVMTERPKTKVAEAEDSCVIDIKG SDGGGRQYKESWDGERVCRICHLTTEQSLESTDITFSTAATMDLIQLGCGCKDELGIA HSHCAEAWFKLKGNRMCEICGQTAKNITGVRDNRFIEDWHDQGSTSGGGISSDRGGGC WRGQPFCNFLMACLVIAFVLPWFFRVNMF" gene 23760424..23761641 /locus_tag="TCM_029668" /note="dbxref CacaoGD:Thecc1EG029668" mRNA join(23760424..23760930,23761066..23761247, 23761415..23761477,23761617..23761641) /locus_tag="TCM_029668" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.36 coverage" CDS join(23761096..23761247,23761415..23761418) /locus_tag="TCM_029668" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27961.1" /translation="MILSSDQVNRSRWLMLPSEQWPMHVSVTSWLLILFSFWVQWPTF PTLPIVH" gene complement(23761475..23766332) /locus_tag="TCM_029669" /note="dbxref CacaoGD:Thecc1EG029669" mRNA complement(join(23761475..23762648,23763156..23763547, 23763853..23764191,23764279..23764425,23764510..23764583, 23764716..23764775,23764860..23764931,23765035..23765178, 23765743..23765814,23765941..23766073,23766225..23766332)) /locus_tag="TCM_029669" /product="Leucine-rich repeat protein kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s07120.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010430t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07120.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b028691t1a2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc273t1" mRNA complement(join(23761475..23762648,23763156..23763547, 23763853..23764191,23764279..23764431,23764510..23764583, 23764716..23764775,23764860..23764931,23765035..23765178, 23765743..23765814,23765941..23766073,23766225..23766332)) /locus_tag="TCM_029669" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s07120.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010430t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07120.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc273t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc273t1" CDS complement(join(23762334..23762648,23763156..23763547, 23763853..23764191,23764279..23764425,23764510..23764583, 23764716..23764775,23764860..23764931,23765035..23765178, 23765743..23765814,23765941..23766073,23766225..23766321)) /locus_tag="TCM_029669" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG010430t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 2" /protein_id="EOY27963.1" /db_xref="Phytozome:POPTR_0011s07120.1" /db_xref="TAIR:AT5G45780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0LGU5" /translation="MWMVLLLFRWFCWVHSVSAGDSLLSPKGVNYEVAALMSVKREMI DARNVMDGWDINSVDPCTWNMVACSAEGFVISLEMASTGLSGLLSPSIGNLSHLRTML LQNNQLSGPIPDEIGKFSELQTLDLSGNQFVGVIPSSLGSLTHLSYLRLSKNNLSGPI PRLIANLTGLSFLDLSFNNLSGPTPKILAKGYSITGNNFLCTSSSEQICTDVTKPLNG SVSSSRVSGYHRWVLSVAIGISSAFVVSVMLLVCWVHWYRSRLLLTSYVQQDYDFEIG HLKRFSFRELQIATGNFNPKNILGQGGFGVVYKGCLPNRTVVAVKRLKDPNFTGEVQF QTEVEMIGLALHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDTSREKPSLDWNR RMHIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSH VTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKTLDAGNGQIQKGMIL DWVRTLHEEKRLEVLVDRDLKGCFGALELEKTAELALQCTRPQPHLRPKMSEVLKVLE GLEQSGTEESQGGTNLCETRACSFSRNYSDIHEESSFIIEAMELSGPR" CDS complement(join(23762334..23762648,23763156..23763547, 23763853..23764191,23764279..23764431,23764510..23764583, 23764716..23764775,23764860..23764931,23765035..23765178, 23765743..23765814,23765941..23766073,23766225..23766321)) /locus_tag="TCM_029669" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG010430t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY27962.1" /db_xref="Phytozome:POPTR_0011s07120.1" /db_xref="TAIR:AT5G45780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0LGU5" /translation="MWMVLLLFRWFCWVHSVSAGDSLLSPKGVNYEVAALMSVKREMI DARNVMDGWDINSVDPCTWNMVACSAEGFVISLEMASTGLSGLLSPSIGNLSHLRTML LQNNQLSGPIPDEIGKFSELQTLDLSGNQFVGVIPSSLGSLTHLSYLRLSKNNLSGPI PRLIANLTGLSFLDLSFNNLSGPTPKILAKGYSITGNNFLCTSSSEQICTDVTKPLNV AGSVSSSRVSGYHRWVLSVAIGISSAFVVSVMLLVCWVHWYRSRLLLTSYVQQDYDFE IGHLKRFSFRELQIATGNFNPKNILGQGGFGVVYKGCLPNRTVVAVKRLKDPNFTGEV QFQTEVEMIGLALHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDTSREKPSLDW NRRMHIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRD SHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKTLDAGNGQIQKGM ILDWVRTLHEEKRLEVLVDRDLKGCFGALELEKTAELALQCTRPQPHLRPKMSEVLKV LEGLEQSGTEESQGGTNLCETRACSFSRNYSDIHEESSFIIEAMELSGPR" gene complement(23767689..>23772079) /locus_tag="TCM_029670" /note="dbxref CacaoGD:Thecc1EG029670" mRNA complement(join(23767689..23768346,23768499..23768600, 23768784..23768867,23769148..23769243,23769321..23769371, 23769474..23769614,23770284..23770340,23770416..23770490, 23770568..23770840,23770916..23770975,23771132..23771224, 23771908..23771919)) /locus_tag="TCM_029670" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s07130.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001738t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021239001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6932t4" CDS complement(join(23768287..23768346,23768499..23768600, 23768784..23768867,23769148..23769243,23769321..23769371, 23769474..23769614,23770284..23770340,23770416..23770490, 23770568..23770840,23770916..23770975,23771132..23771221)) /locus_tag="TCM_029670" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG001738t1" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY27964.1" /db_xref="Phytozome:GSVIVT01021239001" /db_xref="TAIR:AT4G18710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q96287" /translation="MSAAVVDGNDPVTGHIISTTIGGKNGEPKQTISYMAERVVGTGS FGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVLDHPNVISLKHCFFSTTTKNE LFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYLHSVAGVCHRDL KPQNLLVDPLTHQVKICDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTTSIDI WSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKA HPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACSHPFFDELREPNARLPNGRPL PPLFNFKQESDHVKRQIGLQHFMHPAGT" mRNA complement(join(<23768572..23768600,23768784..23768867, 23769148..23769243,23769321..23769371,23769474..23769614, 23770284..23770340,23770416..23770490,23770568..23770840, 23770916..23770975,23771132..23771224, 23771908..>23772079)) /locus_tag="TCM_029670" /product="Kinase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s07130.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001738t2" /inference="similar to AA sequence:Phytozome:GSVIVT01021239001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc911t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6932t4" CDS complement(join(<23768574..23768600,23768784..23768867, 23769148..23769243,23769321..23769371,23769474..23769614, 23770284..23770340,23770416..23770490,23770568..23770840, 23770916..23770975,23771132..23771224, 23771908..>23772078)) /locus_tag="TCM_029670" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG001738t2" /codon_start=1 /product="Kinase superfamily protein isoform 2" /protein_id="EOY27965.1" /db_xref="Phytozome:GSVIVT01021239001" /db_xref="TAIR:AT4G18710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q96287" /translation="VLPFSSPNPTSSSSLPFFFFLLSPRHDLLLLFLLLDPCFSFFVS FSFSRLLVMADDKEMSAAVVDGNDPVTGHIISTTIGGKNGEPKQTISYMAERVVGTGS FGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVLDHPNVISLKHCFFSTTTKNE LFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYLHSVAGVCHRDL KPQNLLVDPLTHQVKICDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTTSIDI WSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKA HPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACSHPFF" mobile_element complement(23772531..23773054) /note="source:CACAO_Mariner_E220_scaffold_9 14744 15247" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 23773361..23773642 /note="source:CACAO_PIF_E119_scaffold_3 1968 2242" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 23774149..23782322 /locus_tag="TCM_029671" /note="dbxref CacaoGD:Thecc1EG029671" mRNA join(23774149..23774661,23775920..23777077, 23777206..23777571,23777827..23777970,23778664..23780508, 23780633..23780956,23781464..23781570,23782034..23782322) /locus_tag="TCM_029671" /product="Leucine-rich repeat protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400042232" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029651t1" /inference="similar to AA sequence:frave:gene29689" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1042t12" CDS join(23776429..23777077,23777206..23777571, 23777827..23777970,23778664..23780508,23780633..23780956, 23781464..23781558) /locus_tag="TCM_029671" /note="dbxref frave:gene29689; paralog of Thecc1EG029651t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein" /protein_id="EOY27966.1" /db_xref="TAIR:AT5G46330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1J3" /translation="MELSWASPQSWMILSSIFFCVLLIQCFMGILAVITAANLTTDQY ALLEFKDSLNPDTVLANNWTSSTSVCNWVGVSCSSNPERVTSLNLCSMNLTGTISPHL GDLSSLLSLDLSGNKLNGYLPSTIYNLSSLQIMDLTSNGLSGDFPDDLCTYFPKLEVL HLAFNGFSGSVPSSLGDCTNLQNLSLSNNRFNGFIPRSIGNLTRLKEIHLGGNRLRGE IPWEIGNLFNLEIFAAENNRGLTGGIPSSIFNISSLTKLLLFNNSLSGGLPDNVCNHL SKLEGLHLSLNRFSGHIPSSIGGCSNLQDLSLSTNQFNGTIPRGIGNLTSLKRLSLRE NDLTGEIPWEIGNLYSLEIFAAQHMRLTGSIPPSIFNISSLKEISLHNNSLSGEIPSM ISITNLELLRLWGNNLSGNIPNFISNASKLTTLSLQENSFSGLIPNTLGNLRFLERLS LASNNLITETSTHEWSFLSSLSNCRNLRYLNLSSNPLNGILPGSISNLSTSLQFFYAS GVKITGNIPREIGNLSNITTLDLSHNELSGSIRAPIGRLRNVQGLYLDGNQLQGSIPP SVCGLGRLHTLSLGGNMLHGPIPTCLANLTSLRYLHLDSNKLNSIIPLTLWSLNNILL VDLSSNYLNGSLPSGIQKLKVLTHLNLSRNLLSGEIWSSIGELQDLISLDLSNNRFDG YIPESFGDLISLKSLDLSNNDLYGVIPKSLEKLSFLNHFNVSFNRLEGEIPIGGPFRN FSAKSFMKNYGLCGSPVLQVPPCKSRQSKMTPWHVFKYVLPVVTSITLIAAVFILHKR CRRRNINLPVNDDLLPLKKWRRISYSELLQATNEFDECNLLGSGGFGSVYRGTLSDGM NVAIKVFNMHLEGRFKSFDVECEAMRNIFHRNLVKVISSCSNVDFKALIFEFMPNGSL EKWLYFSNYFLNLLQRIDIMIDVASALEYLHFGCSVPVIHCDLKPSNILLDKDMVAHV GDFGLAKLMGEEDSMRQTKTLATIGYMAPEYGSSGIVSPKGDVYSYGILLMETFTRKK PTDEIFSGEMSLMDWVKRSLSNGTIDDVLDANLLREEEHFIDKVNVLSSIMGLALECT AELPKERKNMKDVVAILKKIKREGKIGERNCMFGDDYQAFTITDVAVCEYNR" gene 23783479..23788523 /locus_tag="TCM_029672" /note="dbxref CacaoGD:Thecc1EG029672" mRNA join(23783479..23783746,23783951..23784604, 23785012..23785101,23785277..23785376,23785499..23785569, 23785906..23785994,23786235..23786355,23786462..23786605, 23787123..23787801,23787910..23788523) /locus_tag="TCM_029672" /product="O-fucosyltransferase family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene29688" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030298t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021238001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:PASA:2:TSA:puevd3b028694t1a2; inference alignment:Newbler:10:TSA:cgbaL_g02824t00001" mRNA join(23783479..23783746,23783951..23784604, 23785012..23785101,23785277..23785376,23785499..23785569, 23785906..23785994,23786235..23786355,23786462..23786605, 23787123..23787457,23787561..23787801,23787910..23788523) /locus_tag="TCM_029672" /product="O-fucosyltransferase family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene29688" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030298t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07160.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02824t00001" CDS join(23784224..23784604,23785012..23785101, 23785277..23785376,23785499..23785569,23785906..23785994, 23786235..23786355,23786462..23786605,23787123..23787457, 23787561..23787801,23787910..23788218) /locus_tag="TCM_029672" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030298t1" /codon_start=1 /product="O-fucosyltransferase family protein isoform 1" /protein_id="EOY27967.1" /db_xref="Phytozome:POPTR_0011s07160.1" /db_xref="TAIR:AT1G29200.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S8B0" /translation="MGKQGSPRSPRPMSKNTNSVFRTKDYHIRSSDSSGASDPSIGRR ILGGENYWNSKAALLHGLKADSGKFTPCKGVYVGKRHTWFRRNVKSIAFTVVLIAFLF LLDSLMVSIFGSINLQSSTNSTSREEDSVAYIHEERPTVQMYGRLLNLASTALAEKVF KQDSVNFWEEPYPQASKWKPCADRKTPTSPGKPEKSNGYILVSANGGLNQQRVAICNA VAVASLLNATLVLPIFLYSNVWKDPSQFGDIYQEDYFMRILQDDIDIVKELPPHLKSL DIEVIGSLITDADIEKEAKPNDYIRSVLPLLVQNRVVHFLGFGNRLGFDPLPPDLQRL RCKCNFHALKFVPKIQEVGSLLIRRIRKYYAAKRQLDKQLLGDFMPSISSKTHNAARG PSKYLALHLRFEEDMVAYSLCDFGGGEYEQKELQAYREVHFPLLIERLKNSKPVYPVE LRKFGRCPLTPEEAALVLAALGFKRETYIYLAGSHIYGGSSRMHPFTSLYPNLVTKET LLTTNELAPFRNFSSQLAALDFIACATSDVFAMTDSGSQLSSLVSGFRTYYGDGHAPT LRPNKKRLAAILSENSTIGWNIFEDRVRKMIEEGQRVRVRGSGRSIYRQPRCPECMCR SQ" CDS join(23784224..23784604,23785012..23785101, 23785277..23785376,23785499..23785569,23785906..23785994, 23786235..23786355,23786462..23786605,23787123..23787488) /locus_tag="TCM_029672" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030298t1" /codon_start=1 /product="O-fucosyltransferase family protein isoform 2" /protein_id="EOY27968.1" /db_xref="Phytozome:GSVIVT01021238001" /db_xref="TAIR:AT1G29200.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S8B0" /translation="MGKQGSPRSPRPMSKNTNSVFRTKDYHIRSSDSSGASDPSIGRR ILGGENYWNSKAALLHGLKADSGKFTPCKGVYVGKRHTWFRRNVKSIAFTVVLIAFLF LLDSLMVSIFGSINLQSSTNSTSREEDSVAYIHEERPTVQMYGRLLNLASTALAEKVF KQDSVNFWEEPYPQASKWKPCADRKTPTSPGKPEKSNGYILVSANGGLNQQRVAICNA VAVASLLNATLVLPIFLYSNVWKDPSQFGDIYQEDYFMRILQDDIDIVKELPPHLKSL DIEVIGSLITDADIEKEAKPNDYIRSVLPLLVQNRVVHFLGFGNRLGFDPLPPDLQRL RCKCNFHALKFVPKIQEVGSLLIRRIRKYYAAKRQLDKQLLGDFMPSISSKTHNAARG PSKYLALHLRFEEDMVAYSLCDFGGGEYEQKELQAYREVHFPLLIERLKNSKYGPTCL LVL" gene complement(23788442..23792674) /locus_tag="TCM_029673" /note="dbxref CacaoGD:Thecc1EG029673" mRNA complement(join(23788442..23789081,23789166..23789326, 23789440..23789517,23789614..23789705,23789776..23789921, 23790004..23790100,23790257..23790441,23790725..23790784, 23790879..23790954,23791047..23791147,23791634..23791810, 23792003..23792100,23792185..23792674)) /locus_tag="TCM_029673" /product="Xanthine/uracil permease family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002164t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021237001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6786t2" CDS complement(join(23788869..23789081,23789166..23789326, 23789440..23789517,23789614..23789705,23789776..23789921, 23790004..23790100,23790257..23790441,23790725..23790784, 23790879..23790954,23791047..23791147,23791634..23791810, 23792003..23792100,23792185..23792275)) /locus_tag="TCM_029673" /note="paralog of Thecc1EG002164t1" /codon_start=1 /product="Xanthine/uracil permease family protein" /protein_id="EOY27969.1" /db_xref="Phytozome:GSVIVT01021237001" /db_xref="TAIR:AT2G34190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B8A9T1" /translation="MAAPKPEEISHPPMDQLQGLEYCIDSNPSWGEAIALGFQHYILA LGTAVMIPSFLVPLMGGTDDDKVRVVQTLLFVEGINTLLQTLFGTRLPTVIGGSYAFM VPIISIIHDTSLTSIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQMWAICSRFFSP LGMVPVIALVGFGLFDRGFPVVGRCVEIGIPMLILFIAFSQYLKNFLTKQLPILERFG LLISITVIWAYAHLLTASGAYKHRPQLTQLNCRTDKANLISSAPWIKIPYPLQWGAPT FDAGHAFGMMAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGWQGIGILLDGLF GTLTGSTVSVENVGLLGSTRVGSRRVIQISAGFMIFFSILGKFGALFASIPFTIFAAV YCVLFGLVASVGLSFLQFTNMNSMRNLFITGVALFLGLSVPEYFREYTAKALHGPAHT RGEWFNDFLNTIFFSSPTVALIIAVFLDNTLDYKDSARDRGMPWWVKFRTFKGDNRNE EFYTLPFNLNRFFPPS" gene complement(23794632..23798417) /locus_tag="TCM_029674" /note="dbxref CacaoGD:Thecc1EG029674" mRNA complement(join(23794632..23795523,23795695..23795813, 23795900..23795991,23796095..23796226,23796432..23796633, 23797193..23797401,23797501..23797543,23797643..23798074)) /locus_tag="TCM_029674" /product="Transcriptional regulator family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g06740.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021235001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02953t00001" CDS complement(join(23795457..23795523,23795695..23795813, 23795900..23795991,23796095..23796226,23796432..23796633, 23797193..23797401,23797501..23797543,23797643..23798011)) /locus_tag="TCM_029674" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transcriptional regulator family protein, putative isoform 1" /protein_id="EOY27970.1" /db_xref="Phytozome:GSVIVT01021235001" /db_xref="TAIR:AT1G29220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AJ97" /translation="MASRKKESEGIALLSMYNDEDDEEMEDAEEDDYQQHQQGIEEEQ QPEQENEYRGSNLEEDARTNDDTPPFPYQTSTPSQQPPQPSVSSPQQQLRVVSSKRSG RGRLTIVDYGHDEAAMSPEPEEGELGSSTEHQITNGDFQGKTPPAAVQVTPQLSNVEP SQPETMNNAVTESEGVEVEEPVAVENVDPLDKFLPPPPKAKCSEELQRKIDKFLLLKR AGKSFNAEVRNRKDYRNPDFLLHAVRYQDIDQIGSCFSKDVFDPHGYDKSDYYDEIEA DMKRERERKEQESKKNQKVEFVSGSSQPGAVLTAPKVGLPIAAVAAGGLPSAPTAVDN IVREGRQNKKSKWDKVDSDRRNPLPVGAQDSLSTVGAHTVLLSAANAGTGYTAFAQQK RRETEEKRSSERRLDRRS" mRNA complement(join(23795695..23795813,23795900..23796226, 23796432..23796633,23797193..23797401,23797501..23797543, 23797643..23798417)) /locus_tag="TCM_029674" /product="Transcriptional regulator family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g06740.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021235001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc642t6_C2; inference alignment:Newbler:10:TSA:cgbaP1_g02953t00001" CDS complement(join(23796012..23796226,23796432..23796633, 23797193..23797401,23797501..23797543,23797643..23798011)) /locus_tag="TCM_029674" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transcriptional regulator family protein, putative isoform 2" /protein_id="EOY27971.1" /db_xref="Phytozome:GSVIVT01021235001" /db_xref="TAIR:AT1G29220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AJ97" /translation="MASRKKESEGIALLSMYNDEDDEEMEDAEEDDYQQHQQGIEEEQ QPEQENEYRGSNLEEDARTNDDTPPFPYQTSTPSQQPPQPSVSSPQQQLRVVSSKRSG RGRLTIVDYGHDEAAMSPEPEEGELGSSTEHQITNGDFQGKTPPAAVQVTPQLSNVEP SQPETMNNAVTESEGVEVEEPVAVENVDPLDKFLPPPPKAKCSEELQRKIDKFLLLKR AGKSFNAEVRNRKDYRNPDFLLHAVRYQDIDQIGSCFSKDVFDPHGYDKSDYYDEIEA DMKRERERKEQESKKNQKVEFVSGSSQPGAVLTAPKVGLPIAGGFFFFGGKYLLMSVF LVQDLVMVFLY" gene complement(23799147..23802484) /locus_tag="TCM_029675" /note="dbxref CacaoGD:Thecc1EG029675" mRNA complement(join(23799147..23800634,23800977..23802484)) /locus_tag="TCM_029675" /product="Receptor kinase, putative" /inference="alignment:exonerate- protein:2:ricco:30026.m001440" /inference="similar to AA sequence:Phytozome:POPTR_0004s05720.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04341t00001" CDS complement(join(23799991..23800634,23800977..23802375)) /locus_tag="TCM_029675" /codon_start=1 /product="Receptor kinase, putative" /protein_id="EOY27972.1" /db_xref="Phytozome:POPTR_0004s05720.1" /db_xref="TAIR:AT5G45800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S8A7" /translation="MEVFGRLLLLFSLVVAVQSTCNSTDYGLVSKAFKSVSGFNISWL KSQDVNCSYPPIKVLKFPSKNLTGNVSWKFLRNMSQLHTIDFSNNSLQGSVPGWLWSV HTLVEVNLSKNKFGGTIGFEPTSGNGSSSSMRLLNLSANRFTNSVKLSGFSNLQFLDL SHNDLGTLPSGFTNLTKLEHLDVSSCKISGSMKPISALHSLKYLDVSNNSLNGTFPSD FPPVNSLKFLNISLNHFTGSVGFDKLQRFGKSAFFHGGNFVFNTSKRTPSNHTRTHSL TPNHKVFHKHLPLKTHSKKHKTNSKTKALVIGLSCGTGFLLASLVFCFFCTYRRKKLA RRNKWAISTPVQPNFKMEKSGPFSFETESGSSWVADIKEPTSAPVIMSSKPLMNLTFK DLMAATSHFGKESVLAEGRCGPLYRAILPGDLHVAIKVLEHARDVDHDDAIAMFEDLS RLKHSNLLPLCGYCIAGKEKLVLHEFMANGDLHRWLHELPTGPSNVEDWSTDTWEYHH GAGSQTSSPKKTNWLTRHRIAVGVARGLAYLHHVGSSHGHLVASNVLLSDNLEPRISD FGIRNIGCKKERDDKKDEKNAEMDVYSFGVVLLELLTGKQGTEENVKWVRRLVKEGVG VDALDSRLRLGGESESEMVESLRVGYLCTAELPAKRPTIQQVLGLLKDIHPAIDFN" gene complement(23802642..23803618) /locus_tag="TCM_029676" /note="dbxref CacaoGD:Thecc1EG029676" mRNA complement(23802642..23803618) /locus_tag="TCM_029676" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.76 coverage" CDS complement(23803240..23803512) /locus_tag="TCM_029676" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27973.1" /translation="MSLEREYISSKDSLRYEVQALILKKNDIFQCEITKQNPSGDRFF AWMLAVDKKTETGSRHKLCEIHCNCVMVKGQKADRTSDYFEIYVQN" mobile_element 23806907..23807396 /note="source:scaffold_9_CACTA_0946 17748 18225" /mobile_element_type="transposon:TIR/CACTA" gene 23807855..23813077 /locus_tag="TCM_029677" /note="dbxref CacaoGD:Thecc1EG029677" mRNA join(23807855..23809867,23812888..23813077) /locus_tag="TCM_029677" /product="CBL-interacting protein kinase 12 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029678t1" /inference="similar to AA sequence:TAIR:AT4G18700.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6839t1" mRNA join(23807973..23809543,23812168..23812303) /locus_tag="TCM_029677" /product="CBL-interacting protein kinase 12 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029678t1" /inference="similar to AA sequence:TAIR:AT4G18700.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6839t1; alternateUTRof:Thecc1EG029677t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6839t1" CDS 23808102..23809520 /locus_tag="TCM_029677" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029678t1" /codon_start=1 /product="CBL-interacting protein kinase 12 isoform 1" /protein_id="EOY27974.1" /db_xref="TAIR:AT4G18700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LP51" /translation="MDCSSVATAKKDANGGQALLLGRYEVGKLLGHGTFAKVYHARNV KSGDSVAIKVIDKEKILKGGLIAHIKREIAILRRVRHPNIVQLFEVMATKSKIYFVME YVRGGELFNKVAKGRLKEDAARKYFQQLISAVNFCHARGVYHRDLKPENLLLDDGGNL KVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDAAKVDIWSCGVILFVLM AGYLPFHDHNVMAMYKKIYKGEFRCPRWFSPELTRLLTKLLDTNPEKRITIPEIMENR WFKKGFKHIKFYIEDDKLCNVEEDDDDVGSCSDQSSLSESEAEFETRRKVTSLPRPAS LNAFDLISFSPGFNLSGLFEEGEEGARFVSGAPVSKIISKLEEIAKVVSFTVRKKDCR VSLEGSREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDRGEYEEFCNRELKPGLENLM LEESRSTAVAAADVSHLPSDTE" CDS 23808102..23809520 /locus_tag="TCM_029677" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029678t1" /codon_start=1 /product="CBL-interacting protein kinase 12 isoform 1" /protein_id="EOY27975.1" /db_xref="TAIR:AT4G18700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LP51" /translation="MDCSSVATAKKDANGGQALLLGRYEVGKLLGHGTFAKVYHARNV KSGDSVAIKVIDKEKILKGGLIAHIKREIAILRRVRHPNIVQLFEVMATKSKIYFVME YVRGGELFNKVAKGRLKEDAARKYFQQLISAVNFCHARGVYHRDLKPENLLLDDGGNL KVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDAAKVDIWSCGVILFVLM AGYLPFHDHNVMAMYKKIYKGEFRCPRWFSPELTRLLTKLLDTNPEKRITIPEIMENR WFKKGFKHIKFYIEDDKLCNVEEDDDDVGSCSDQSSLSESEAEFETRRKVTSLPRPAS LNAFDLISFSPGFNLSGLFEEGEEGARFVSGAPVSKIISKLEEIAKVVSFTVRKKDCR VSLEGSREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDRGEYEEFCNRELKPGLENLM LEESRSTAVAAADVSHLPSDTE" gene complement(23813267..23815284) /locus_tag="TCM_029678" /note="dbxref CacaoGD:Thecc1EG029678" mRNA complement(23813267..23815284) /locus_tag="TCM_029678" /product="CBL-interacting protein kinase 20" /inference="alignment:exonerate- protein:2:ricco:30026.m001437" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042264t1" /inference="similar to AA sequence:ricco:30026.m001437" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06185t00001" CDS complement(23813813..23815237) /locus_tag="TCM_029678" /note="dbxref ricco:30026.m001437; paralog of Thecc1EG042264t1" /codon_start=1 /product="CBL-interacting protein kinase 20" /protein_id="EOY27976.1" /db_xref="TAIR:AT5G45820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10LQ2" /translation="MVLSINSLLPVEPSALICAAEGEIMEKKGVILMNRFELGRLLGQ GTFAKVYHARNLTTGQSCAIKVIDKEKIMKGGLIDQIKREISVMRLVRHPNVVRLYEV MASKAKIYFVMEYVRGGELFNKVAKGKLKEDAARHYFQQLIAAVDYCHSRGVYHRDLK PENLLLDENGNLKVSDFGLSALKESRRQDGLLHTTCGTPAYVAPEVINKKGYDGAKAD IWSCGVILYVLLAGFLPFHDQNLMEMYRKICRGEFRCPQWIPPEVRKLLSRILDPNPS PRITVAKLMENSWFKKGYKHIDSPPPSPHARRIDLLISDVHAVFDSSGRENSSQNEAA VPTSPVRPSFFNAFDIISLSQGFDLSGLFEKDLDQRNYSRFTTRKPATDIVSKFQQIA QTESFSIKNKDGKVKLQGSKEGRKGLLAIDAEIFEVTPSFYVVELNKTAGDTLEYKKF CNQELKPSLKDIVWTWQGNEQQQS" gene complement(23815626..23822129) /locus_tag="TCM_029679" /note="dbxref CacaoGD:Thecc1EG029679" mRNA complement(join(23815626..23816562,23816887..23816956, 23817309..23817363,23817490..23817684,23818981..23819792, 23821922..23822129)) /locus_tag="TCM_029679" /product="Delay of germination 1, putative" /inference="alignment:exonerate- protein:2:ricco:53083.m000013" /inference="similar to AA sequence:ricco:53083.m000013" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1430t1" CDS complement(join(23816395..23816562,23816887..23816956, 23817309..23817363,23817490..23817684,23818981..23819719)) /locus_tag="TCM_029679" /note="dbxref ricco:53083.m000013" /codon_start=1 /product="Delay of germination 1, putative" /protein_id="EOY27977.1" /db_xref="TAIR:AT5G45830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9THQ4" /translation="MASDNQRLQCCFQEWMTIQEQELSELLQALNLKENDVNSSENTY AKLAEKSINSFQEYIDKRNQLSRQDVSGLFAPSWNTALENSLLWIGGCRPSMYIRLTY ALCGSQVEFQLLEILQGLARGDLGQISATQLGKINDLHMKTMKEEERLSNNLASLQEN IADQPIAVIAKRLCRVGESSGEVDRALDEHESSMANILQEADKLRLSTLKELLGILTP VQGVDFLAASKKLHLCMHEWGKTRDHRHGQGSGRWSVPLVKEFWKFNDCNVQCANSDI IASLVQIIFVKSGFHGMILGYVRWMRQQDSSQVQPEDGPSPPIVLKSSKRITPSLYRV HVFQPQSCLEKQEISTHRRELVLCLWLKALVICGSVGQTVPTWSAHLENLKGKREAYG PVKMDPFDCWASTWRW" gene 23819949..23821502 /locus_tag="TCM_029680" /note="dbxref CacaoGD:Thecc1EG029680" mRNA join(23819949..23820261,23820692..23821502) /locus_tag="TCM_029680" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.70 coverage" CDS 23820877..23821155 /locus_tag="TCM_029680" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27978.1" /translation="MNTNHQLPSVQMQQQGAGLYSDQHINYFSQVPNKILRLFSYGME SQLSQAEKYIWVGKLCSLITRFGPRSLEGLGLKCENGLPIFTSAIIGV" gene 23822194..23823458 /locus_tag="TCM_029681" /note="dbxref CacaoGD:Thecc1EG029681" mRNA 23822194..23823458 /locus_tag="TCM_029681" /product="Transcription factor-related, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05690.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05690.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc3963t1" CDS 23822315..23823070 /locus_tag="TCM_029681" /codon_start=1 /product="Transcription factor-related, putative" /protein_id="EOY27979.1" /db_xref="Phytozome:POPTR_0004s05690.1" /db_xref="TAIR:AT4G18650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6DXR3" /translation="MKTPVGERFSQFFEKWICQLDDYLQQLLRVSKESLSSEADEQQA LVSKLTAHYKEFYTVKWTAAHEDVLAFYCPVWLSKLENAYSWLTGWKPSMIFRLVESM RRTRVPGPGLAELTEEQLRKIEQLRMKIKLEEEKVEREMERQQVALADRKMVELVRMA SRIRKGELVGQVDGLVEVAIKGILAGLERVMKAADCVRLKTLKGVLDVLNPSQSVDFL AGTCMLQIQLRQWGQRRDGQNGPRLEPHNNALF" gene complement(23823714..23830096) /locus_tag="TCM_029682" /note="dbxref CacaoGD:Thecc1EG029682" mRNA complement(join(23823714..23824304,23824455..23824643, 23824729..23824886,23824988..23825120,23825259..23825449, 23826038..23826502,23826587..23826648,23826767..23826868, 23827605..23827748,23827833..23827976,23828405..23828476, 23828692..23828824,23828946..23829445,23829567..23830096)) /locus_tag="TCM_029682" /product="Leucine-rich repeat protein kinase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29090.m000052" /inference="similar to AA sequence:ricco:29090.m000052" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6779t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6779t4" mRNA complement(join(23823714..23824304,23824455..23824643, 23824729..23824886,23824988..23825120,23825259..23825449, 23826038..23826502,23826587..23826648,23826767..23826868, 23827605..23827748,23827833..23827976,23828405..23828476, 23828692..23828824,23828946..23829445,23829557..23830096)) /locus_tag="TCM_029682" /product="Leucine-rich repeat protein kinase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29090.m000052" /inference="similar to AA sequence:ricco:29090.m000052" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6779t5; alternateUTRof:Thecc1EG029682t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6779t4" CDS complement(join(23824050..23824304,23824455..23824643, 23824729..23824886,23824988..23825120,23825259..23825449, 23826038..23826502,23826587..23826648,23826767..23826868, 23827605..23827748,23827833..23827976,23828405..23828476, 23828692..23828824,23828946..23829045)) /locus_tag="TCM_029682" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29090.m000052" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative isoform 1" /protein_id="EOY27980.1" /db_xref="TAIR:AT5G45840.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1K5" /translation="MGGRWNPIGFHLLSFLFFIPSFMIQESLAINSEGLALLEFRAKI DSDSYGAFENWNSNDSTPCMWFGVHCVDSKVQMLDLSALSLEGTLAPELRKLSDLRSL VLYKNRFSGAIPKEFGALMKLELLDLRENNLGGTIPAEIGRMLSLRRLLLCGNKFEGN IPSDLGRLNLLSDLQFAENLTLTSATGIGCVNRKFGLCIWQSSLKQLNQAESLLIPIK GALIHYLNALPLPLFKLQKDSLDEHRDSCCSDVPGSSEQQMAHNIRNLVPFARRRLLE QSKNLPAAPAAAVSSTEQIISLPTARSSGTFPAVPKGTKKQSHAPAPQLHSSLQGTDS KPVDHSSQTSNAEPTAQQPSPSGNIWKYLIVIPCVVVLLVVVAMVIMCRKRAAKTIGP WKTGLSGQLQKAFITGVPKLNRSELETACEDFSNIIDTIGCCTVYKGTLSSGVEIAVA SINVSSLKVWSKSSEMAYRRKIDTLSRVNHKNFVNLIGYCEEDEPFNRMMVFEYAPNG TLFEHLHVKEMEHLDWNTRMRIIMGVAYCLQYMHHDLNPPVAHTNLNSAAIFLTDDYA AKVAEICSSQPALKLKTSGDAESEHSELPPFADPEVNVYSFGILLLEIISGKLPYSEE QGPLEKWAAQYLNDKRSISYMIDPTLKSFKNNELDVICEVIQECIEVDPRQRPTMKDV TSKLREVINVPPEQATPRLSPLWWAELEILSVG" CDS complement(join(23824050..23824304,23824455..23824643, 23824729..23824886,23824988..23825120,23825259..23825449, 23826038..23826502,23826587..23826648,23826767..23826868, 23827605..23827748,23827833..23827976,23828405..23828476, 23828692..23828824,23828946..23829045)) /locus_tag="TCM_029682" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29090.m000052" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative isoform 1" /protein_id="EOY27981.1" /db_xref="TAIR:AT5G45840.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1K5" /translation="MGGRWNPIGFHLLSFLFFIPSFMIQESLAINSEGLALLEFRAKI DSDSYGAFENWNSNDSTPCMWFGVHCVDSKVQMLDLSALSLEGTLAPELRKLSDLRSL VLYKNRFSGAIPKEFGALMKLELLDLRENNLGGTIPAEIGRMLSLRRLLLCGNKFEGN IPSDLGRLNLLSDLQFAENLTLTSATGIGCVNRKFGLCIWQSSLKQLNQAESLLIPIK GALIHYLNALPLPLFKLQKDSLDEHRDSCCSDVPGSSEQQMAHNIRNLVPFARRRLLE QSKNLPAAPAAAVSSTEQIISLPTARSSGTFPAVPKGTKKQSHAPAPQLHSSLQGTDS KPVDHSSQTSNAEPTAQQPSPSGNIWKYLIVIPCVVVLLVVVAMVIMCRKRAAKTIGP WKTGLSGQLQKAFITGVPKLNRSELETACEDFSNIIDTIGCCTVYKGTLSSGVEIAVA SINVSSLKVWSKSSEMAYRRKIDTLSRVNHKNFVNLIGYCEEDEPFNRMMVFEYAPNG TLFEHLHVKEMEHLDWNTRMRIIMGVAYCLQYMHHDLNPPVAHTNLNSAAIFLTDDYA AKVAEICSSQPALKLKTSGDAESEHSELPPFADPEVNVYSFGILLLEIISGKLPYSEE QGPLEKWAAQYLNDKRSISYMIDPTLKSFKNNELDVICEVIQECIEVDPRQRPTMKDV TSKLREVINVPPEQATPRLSPLWWAELEILSVG" gene 23830546..23837593 /locus_tag="TCM_029683" /note="dbxref CacaoGD:Thecc1EG029683" mRNA join(23830546..23830621,23832896..23833125, 23833270..23833433,23833613..23833760,23834789..23834895, 23835740..23835770,23836722..23836925,23837005..23837593) /locus_tag="TCM_029683" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s07260.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001727t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021226001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc392t4_C2" mobile_element 23831132..23831233 /note="source:INTACT433_F212_scaffold_1-int 3049 3150" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(23833026..23833125,23833270..23833433, 23833613..23833760,23834789..23834895,23835740..23835770, 23836722..23836925,23837005..23837123) /locus_tag="TCM_029683" /note="paralog of Thecc1EG001727t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27982.1" /db_xref="Phytozome:GSVIVT01021226001" /db_xref="TAIR:AT3G58670.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SJI9" /translation="MPVVQKLYDTCKESFSTNGPISEEALENVRAILDGLKPSNVGLE QEAQLSRGWEGLINGGNGRKGRNIIHQYPPAIKYLHLHECDRFSIGIFCMPPSSIIPL HNHPGMTVLSKLLYGSLHAKSYDWLDLPGHADLSQGVKEMKLFKTVTLLQNELIIMVA SISKCILWVFSDKVGIGCFADDVARPAKLVRNCEVTAPSGATILYPTTGGNIHCFKAL TPCALFDVLSPPYSSEDGRHCSYFRRIPQRNLEGVDQLCGVNPSEVAWLEEIQPPENF VVRRGQYRGPIIRQ" gene 23845170..23849714 /locus_tag="TCM_029684" /note="dbxref CacaoGD:Thecc1EG029684" mRNA join(23845170..23845721,23845857..23845933, 23846035..23846071,23846966..23847173,23847253..23847679, 23847790..23848228,23849686..23849714) /locus_tag="TCM_029684" /product="Myb-like HTH transcriptional regulator family protein, putative" /inference="alignment:exonerate- protein:2:frave:gene15767.2" /inference="similar to AA sequence:Phytozome:POPTR_0004s05660.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6720t1" CDS join(23845391..23845721,23845857..23845933, 23846035..23846071,23846966..23847173,23847253..23847679, 23847790..23847930) /locus_tag="TCM_029684" /codon_start=1 /product="Myb-like HTH transcriptional regulator family protein, putative" /protein_id="EOY27983.1" /db_xref="Phytozome:POPTR_0004s05660.1" /db_xref="TAIR:AT2G38300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H504" /translation="MIEGIENHDEEKRVESEEQAENLSAVSSPKCSSFDLNEEASSEE DYDIDIAKENEVSVEEDEKRTEGSSSNNNERRTVRQYVRSKLPRLRWTPDLHLSFVHA VERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLRQANRQIQGR DEFRSMLQQVSSSPHQHFRMENGGIVLARGSLENNITRSLYKSPFYQRPLDFKPSIPR HQPTSFISKARGQENGFPKPTALHNQGQSNQIHTMDTAMRVGPMRPGRFLEEKRWHPF ELISNRWRVNGNMTKDTFATTCSQSQSPYFCTRPSSDGESYSTRPAAGNLGTKKMIGQ FVSNKHDSLSKFSSCRPEFEAPLWLELKQDKLLKDREWLPDLQLRLSQRIGIDDEKTH CKGTEEISTQLSLS" gene complement(23849717..23853785) /locus_tag="TCM_029685" /note="dbxref CacaoGD:Thecc1EG029685" mRNA complement(join(23849717..23850214,23850302..23851387, 23851480..23852624,23853533..23853785)) /locus_tag="TCM_029685" /product="Transcription initiation factor TFIID subunit 11, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021224001" /inference="similar to AA sequence:Phytozome:GSVIVT01021224001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6731t1" CDS complement(join(23850176..23850214,23850302..23851387, 23851480..23852487)) /locus_tag="TCM_029685" /codon_start=1 /product="Transcription initiation factor TFIID subunit 11, putative" /protein_id="EOY27984.1" /db_xref="Phytozome:GSVIVT01021224001" /translation="MEERKLNFNAPLLSVRRFSATSAFSDRDKQKIVENPCPNRRHTL PFYNSDVSLDQVTEPVAVPFVWEQIPGKAKGGIEHESQPNKEASGTPRLPPGRVLDIM KYTVEKEFENQNVVRPQSEIYSLNDNVTKLDSSNKGINEKCISESETDDDAYSDALDT LSPTDSLSMNCSISGLSGSSGLVAKPSGTFSSDPQTRDFMMSRFLPAAKAMTLEMPQY ASRKQSVAPALPREDKKVVVGDRKPPVNQYESVIIPHYNQDVDGEETEDEYDDYEDSG NLSRKACGLLPRLSFKNSLCLLNPVPGLKVRTHSSMPSTREVAKPSKATYMKSHSQII EKHAWDAVHKNKSDSGVQSPQPQENKSDTGVQSPRLPENKLSGGVQSPRLPEIGKKMT CGSNQFTNSGDQQIVNRSPPKRLPGSARISPYRRERPQSPFRGGGFLGMPKEAEKFNA NMLIKYTKSNNNSQELVPYQSTRQGSGALSPAVEKTLYVDTVNFAEIASSNSDSSDTK APMDSMGKHSDTLLVNRMLEESATVESSLQDIKCLNLLDGKDISKYEITGSVYSSRSS FSDKPDLKGQAEMMDCFRQNGGLNKSLGRIKVRADRSLTLSANGDVREADQEENNAGS DCSPLPPPLPKTPSESWLWCALPSVTSRNSFSQSYNGTRFYPKKEEPKVSATDTKWET IVKTSYLHHDHVRYSEELVTHFSQQSKT" gene complement(23853833..23862199) /locus_tag="TCM_029686" /note="dbxref CacaoGD:Thecc1EG029686" mRNA complement(join(23853833..23853902,23858359..23858966, 23859138..23859647,23859752..23859889,23860009..23860241, 23861687..23862199)) /locus_tag="TCM_029686" /product="Xylem bark cysteine peptidase 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021223001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033775t1" /inference="similar to AA sequence:frave:gene29675" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc271t5" mobile_element 23855544..23855682 /note="source:CACAO_on_S_E390_scaffold_9 2169 2314" /mobile_element_type="transposon:TIR/Mutator" mobile_element 23855547..23855835 /note="source:scaffold_1_CACTA_0016 1134 1594" /mobile_element_type="transposon:TIR/CACTA" gene 23856494..23857106 /locus_tag="TCM_029687" /note="dbxref CacaoGD:Thecc1EG029687" mRNA 23856494..23857106 /locus_tag="TCM_029687" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.13 coverage" CDS 23856683..23856883 /locus_tag="TCM_029687" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27987.1" /translation="MVKTHTRTKNKFPCNMVHGGCFAPPPPTTLSHTPMHVEPIPQPP PADVGVAILGPERTAACHVSLL" gene <23857177..23857780 /locus_tag="TCM_029688" /note="dbxref CacaoGD:Thecc1EG029688" mRNA <23857177..23857780 /locus_tag="TCM_029688" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.88 coverage" CDS <23857179..23857508 /locus_tag="TCM_029688" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27988.1" /translation="KYPQLIKKITTLSHIKPFFFSLFPSPVFLSTFSHPSLEKHLLSQ LVFDRLPLLSQPAFPHLHLLSQPIFPCLPLLSQPIFFLSLSRGSSPLSQVALTHHISK DITYFFF" mobile_element 23857876..23858216 /note="source:CACAO_on_E732_scaffold_9 3586 3936" /mobile_element_type="transposon:TIR/PIF-Harbinger" mRNA complement(join(23858640..23858966,23859138..23859647, 23859752..23859889,23860009..23860357)) /locus_tag="TCM_029686" /product="Xylem bark cysteine peptidase 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021223001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034129t1" /inference="similar to AA sequence:frave:gene29675" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc276t12; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc276t16; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc271t5" CDS complement(join(23858826..23858966,23859138..23859647, 23859752..23859889,23860009..23860241,23861687..23862170)) /locus_tag="TCM_029686" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene29675; paralog of Thecc1EG033775t1" /codon_start=1 /product="Xylem bark cysteine peptidase 3 isoform 1" /protein_id="EOY27985.1" /db_xref="TAIR:AT1G09850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMA2" /translation="MGFQRSVLAFVFLILASRTCLSSSLPTEYSILEHDLDAFLSDER VVEIFRQWKEKHQKVYKHVEEAEKRFENFKGNLKYILERNAKRKSTEGGHRVGLNKFA DMSNEEFRKAYLAKVKKPINKGSTLSRNMRRKVQSCDAPSSLDWRNYGIVTGVKDQGS CGSCWAFSSTGAMEGINALVTGNLISLSEQELMDCDSTNYGCDGGYMDYAFEWVINNG GIDSEADYPYEGVDGTCNITKEETKVVSIDGYKDVEESDSALLCAVVQQPVSVGIDAS SIDFQLYTGGIFDGSCSDNPDDIDHAVLIVGYGSEDGEDYWIVKNSWGTSWGMDGYFY LKRDTDLPYGVCAVNAMASYPTKESSSPSPYPSPSVPPPPPPPSTPPPPPPPPPPSPS PSECGDFSYCPSDETCCCLFEFYDYCLIYGCCAYENAVCCTGTEYCCPSDYPICDVQE GLCLKNAGDYLGVAAKKRKMAKHKLPWTKTEQTEKTYQPLQWKRNPFAAMR" CDS complement(join(23858826..23858966,23859138..23859647, 23859752..23859889,23860009..23860251)) /locus_tag="TCM_029686" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene29675; paralog of Thecc1EG034129t1" /codon_start=1 /product="Xylem bark cysteine peptidase 3 isoform 2" /protein_id="EOY27986.1" /db_xref="TAIR:AT1G09850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1L1" /translation="MFTGSCWAFSSTGAMEGINALVTGNLISLSEQELMDCDSTNYGC DGGYMDYAFEWVINNGGIDSEADYPYEGVDGTCNITKEETKVVSIDGYKDVEESDSAL LCAVVQQPVSVGIDASSIDFQLYTGGIFDGSCSDNPDDIDHAVLIVGYGSEDGEDYWI VKNSWGTSWGMDGYFYLKRDTDLPYGVCAVNAMASYPTKESSSPSPYPSPSVPPPPPP PSTPPPPPPPPPPSPSPSECGDFSYCPSDETCCCLFEFYDYCLIYGCCAYENAVCCTG TEYCCPSDYPICDVQEGLCLKNAGDYLGVAAKKRKMAKHKLPWTKTEQTEKTYQPLQW KRNPFAAMR" gene complement(23865346..23866294) /locus_tag="TCM_029689" /note="dbxref CacaoGD:Thecc1EG029689" mRNA complement(23865346..23866294) /locus_tag="TCM_029689" /product="PYR1-like 11" /inference="alignment:exonerate-protein:2:frave:gene29674" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042432t1" /inference="similar to AA sequence:Phytozome:Glyma13g30210.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1516t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc8811t1" CDS complement(23865740..23866237) /locus_tag="TCM_029689" /note="paralog of Thecc1EG042432t1" /codon_start=1 /product="PYR1-like 11" /protein_id="EOY27989.1" /db_xref="Phytozome:Glyma13g30210.1" /db_xref="TAIR:AT2G40330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BR51" /translation="MGNQYRTPNLSSKQCGSSLVQTIDAPLPLVWSIMRRFDHPQLYK QFVKSCTLSAGTGSIGSVREVMVVSGLPAATSMERLDELDEDSHVMVVSIIGGDHRLV NYRSTTTLHEIEEGKGGKTVVMESYVVDVPAGSSKEDTCSFADMIIGCNLRSLARVTE KMAKV" gene complement(23867809..23871099) /locus_tag="TCM_029690" /note="dbxref CacaoGD:Thecc1EG029690" mRNA complement(join(23867809..23870084,23870710..23871099)) /locus_tag="TCM_029690" /product="RNI superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s07320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001714t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07320.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage" CDS complement(23867929..23870025) /locus_tag="TCM_029690" /note="paralog of Thecc1EG001714t1" /codon_start=1 /product="RNI superfamily protein" /protein_id="EOY27990.1" /db_xref="Phytozome:POPTR_0011s07320.1" /db_xref="TAIR:AT2G42620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1L2" /translation="MAKKLAGTSSNVHFHDIPDVILSNIFSLVTDTRTRNAVSLVCLK WHLLERSTRKSLTLRGNIRDLFLLPTCFRAVTNLDLSFLSPWGHPLLDSSPNPVLLAQ LLRNAFPSVVSLTVYVRNPSTLHLLAALWPNLRDVKLIRWHQRLPTPIGSDFIALFEH CHTLSSLDVSHFYCWTEDLPPAFEAYPYIGACLSRLNILKNSSADGFKSHELLAITAF CPNLREFLATCTFDHRFIGFVGDQTLLALASNCPSLSLLHLVDATSSSKVRADPNDEG YTSEDASISHATLADVFAGLPLLEELVLDVCHNVRDAWPALEVLNSRCPRLKSLKLGQ FHGICRSIDYRPDGVALCQGLESLSIKNSADLTDTALVAISLGCPRLSKFEVLGCNRI TVIGMWKLAYALQKTLVDVKIFYCKNFDAVSSLQALEPIRDRIERLHIDFVWENVEQS EGQTGSSNQPGGFENFEAGKRGIIREERSVRKKCKSYALGNDNLFSSRTWNKLHYLSL WVAAGELLTPLSLAGLDDCPALEEIDIKIEGDCRDQPRPSMDAFGLSSLACYPRLSRM NLDCSGVIGYALTAPSGRADLSLWERFFLSGIENLHLNELNYWPAQDMDVNQRSLFLP AAGLLAQCGTLRKLFIHGTANEHFMMFLLRIPTLRDVQLREDYYPAPENDTSTEMRVD SCCRFEDALNSGQVPD" mobile_element 23871913..23871966 /note="source:CACAO_M_E22186_F143_scaffold_3 9947 10001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23871921..23871978) /note="source:CACAO_M_S_E14444_F98_scaffold_2 2039 2086" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23872786..23876290 /note="source:CACAO_M_E49279_F74_scaffold_6 1 3505" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23874340..23876119) /locus_tag="TCM_029691" /note="dbxref CacaoGD:Thecc1EG029691" mRNA complement(join(23874340..23875549,23875972..23876119)) /locus_tag="TCM_029691" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046026t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.64 coverage" CDS complement(join(23875200..23875549,23875972..23876011)) /locus_tag="TCM_029691" /note="paralog of Thecc1EG046026t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27991.1" /translation="MCKGSWVGLGNHKDNVFNHVIDEDSAPRFLAKLEKIYLTKSLSN KLQFRRKLYRLKMKENGDLMKHMNEFDVIIDQLKKVDMKVEEEEKALLFLASLSDSYE VFVESLICGMDTITLEQAQAMLMSHEV" mobile_element 23877231..23877261 /note="source:scaffold_5_CACTA_0596 7116 7146" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23877830..23878249) /note="source:CACAO_M_S_E119699_F217_scaffold_9 124 543" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(23878079..23879069) /locus_tag="TCM_029692" /note="dbxref CacaoGD:Thecc1EG029692" mRNA complement(23878079..23879069) /locus_tag="TCM_029692" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046286t1" /note="quality class is medium-utrpoor, express is strong, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(23878682..23878972) /locus_tag="TCM_029692" /note="paralog of Thecc1EG046286t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27992.1" /translation="MTSIGDQSTSCLNFLVQDGVSVANRETTYTRATERYESKDILQV LDNRVSCSEMVINHEVWSNFEWVKDSIEQLGSIAISFAKDGTTWGIREFITM" mobile_element complement(23879696..23879783) /note="source:CACAO_M_E49279_F74_scaffold_6 1846 1933" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23879840..23881235) /locus_tag="TCM_029693" /note="dbxref CacaoGD:Thecc1EG029693" mRNA complement(23879840..23881235) /locus_tag="TCM_029693" /product="Peroxin 7" /inference="alignment:exonerate-protein:2:frave:gene29671" /inference="similar to AA sequence:Phytozome:POPTR_0004s05630.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6789t1" CDS complement(23880151..23881101) /locus_tag="TCM_029693" /codon_start=1 /product="Peroxin 7" /protein_id="EOY27993.1" /db_xref="Phytozome:POPTR_0004s05630.1" /db_xref="TAIR:AT1G29260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XF57" /translation="MPVFKTPFNGYSVKFSPFYESRLAVATAQNFGILGNGRVHVIDL SPSSPVINELIAFDTADGVYDVAWSESHDSVLVAAIADGSIKIYDTALPPHSNPLRSL KEHAREVHGLDYNPTRRDSFLSASWDDSVKLWTLDRPGSLRTFREHAYCVYSASWNPK HADVFASASGDCTVRIWDVREPGSTMIIPGHEHEILSCDWNKYDDCLIASASVDKSIK IWDVRNYRVPVSVLNGHGYAVRKIKFSPHRRNLIVSCSYDMTVCLWDFMVEDALVGRY DHHTEFAVGVDLSVLVDGLMASTGWDELVYVWQQGMDPRA" mobile_element 23881472..23881652 /note="source:scaffold_8_CACTA_0855 3274 3454" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23883019..23883154) /note="source:scaffold_8_CACTA_0854 142 269" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23883163..23883353) /note="source:scaffold_1_CACTA_0016 1520 1700" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23883461..23883553) /note="source:scaffold_8_CACTA_0854 71 160" /mobile_element_type="transposon:TIR/CACTA" gene 23885274..23886616 /locus_tag="TCM_029694" /note="dbxref CacaoGD:Thecc1EG029694" mRNA 23885274..23886616 /locus_tag="TCM_029694" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s07340.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042236t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07340.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6781t1" CDS 23885437..23886030 /locus_tag="TCM_029694" /note="paralog of Thecc1EG042236t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY27994.1" /db_xref="Phytozome:POPTR_0011s07340.1" /db_xref="TAIR:AT1G29195.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1L4" /translation="MKNTIRCCISCILPCGALDVIRIVHSNGRVEEISGTIKASEIMK AHPKHVLKKPSSPADDGMVPKIVIVPPDAELQRGKIYFLMPVPSTPQKTRSKSSSTTK KKKRESLDNSNSSSNNNRNSNGGNSNSHSRQHRHSRSMSNANKNNSISMSNLLISDQY LSEILSEKLSTQRDRRRGRVGVWRPHLESISETPNDA" mobile_element 23889067..23889079 /note="source:CACAO_M_S_E5162_F13_scaffold_1 5173 5187" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23889080..23889132 /note="source:CACAO_Again_on_E20_scaffold_1 709 763" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(23889083..23889145) /note="source:scaffold_5_CACTA_0580 7217 7281" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23889248..23889319 /note="source:scaffold_10_CACTA_0130 1142 1208" /mobile_element_type="transposon:TIR/CACTA" gene 23891851..23896592 /locus_tag="TCM_029695" /note="dbxref CacaoGD:Thecc1EG029695" mRNA join(23891851..23893373,23894278..23894336, 23895948..23896592) /locus_tag="TCM_029695" /product="Sequence-specific DNA binding transcription factors isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G58630.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11850.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc328t2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc328t2" mRNA join(23891851..23893373,23895948..23896592) /locus_tag="TCM_029695" /product="Sequence-specific DNA binding transcription factors isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT3G58630.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s11850.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc328t5; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc328t2" CDS join(23892482..23893373,23894278..23894336, 23895948..23896073) /locus_tag="TCM_029695" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Sequence-specific DNA binding transcription factors isoform 1" /protein_id="EOY27995.1" /db_xref="Phytozome:POPTR_0003s11850.1" /db_xref="TAIR:AT3G58630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKS1" /translation="MGDLTDSLTPSTTPTPLSTTTHSRPLPVREDCWSEEATSTLVDA WGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKIEKA RVTSSNGTLTSSWPFFERLDALIGSNFSAKKPSPSPKISPKPSPRLSPRIPGSPPVAL PLPMPYRRTPASATVVALPQKRPADDGYFRRNYSAVAAAAAAAAAETDEEEGEESEAE ESEGEGEEREGMSRLARAIERFGEVYERVEGEKLRQMVELEKQRMQFAKDLEVQRMRM FMDTQVQLERIKRGKRSSGSSGIYVSQVEAIGVNLGFWIFKTFIASHQGKSFDCFLRG KNMKNIDFYSHPLKVHTVLADTGL" CDS join(23892482..23893373,23895948..23895961) /locus_tag="TCM_029695" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Sequence-specific DNA binding transcription factors isoform 2" /protein_id="EOY27996.1" /db_xref="Phytozome:POPTR_0003s11850.1" /db_xref="TAIR:AT3G58630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GKS1" /translation="MGDLTDSLTPSTTPTPLSTTTHSRPLPVREDCWSEEATSTLVDA WGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKIEKA RVTSSNGTLTSSWPFFERLDALIGSNFSAKKPSPSPKISPKPSPRLSPRIPGSPPVAL PLPMPYRRTPASATVVALPQKRPADDGYFRRNYSAVAAAAAAAAAETDEEEGEESEAE ESEGEGEEREGMSRLARAIERFGEVYERVEGEKLRQMVELEKQRMQFAKDLEVQRMRM FMDTQVQLERIKRGKRSSGSSDIYS" gene complement(23897327..23902927) /locus_tag="TCM_029696" /note="dbxref CacaoGD:Thecc1EG029696" mRNA complement(join(23897327..23897438,23902290..23902927)) /locus_tag="TCM_029696" /product="Beta-lactamase-like protein ENSP00000383859" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05610.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001710t1" /inference="similar to AA sequence:ricco:29900.m001627" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00841t00002" CDS complement(23902320..23902859) /locus_tag="TCM_029696" /note="dbxref ricco:29900.m001627; paralog of Thecc1EG001710t1" /codon_start=1 /product="Beta-lactamase-like protein ENSP00000383859" /protein_id="EOY27997.1" /db_xref="TAIR:AT2G42610.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H2N3" /translation="MSGDVAKASAEGSSRSSGNHHQQPQPAPLSRYESQKRRDWNTFG QYLKNQRPPVALSQCNCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQ AWGSLDALIGRLRAAYEEHGGSSETNPFGNGAIRVYLREVRECQAKARGIPYKKKKKK KNLIKPNDEAKSSKQQQVS" mobile_element 23907482..23907501 /note="source:CACAO_M_E34409_F73_scaffold_5 2272 2298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23907502..23907565) /note="source:CACAO_on_E1_scaffold_1 76 140" /mobile_element_type="transposon:TIR/hAT" mobile_element 23907566..23907580 /note="source:CACAO_M_E34409_F73_scaffold_5 2299 2321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23908759..23908854 /note="source:CACAO_M_E1149_F297_scaffold_1 1040 1116" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23909969..23911549) /locus_tag="TCM_029697" /note="dbxref CacaoGD:Thecc1EG029697" mRNA complement(23909969..23911549) /locus_tag="TCM_029697" /product="D-mannose binding lectin protein with Apple-like carbohydrate-binding domain, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s07370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031775t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400018104" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage" CDS complement(23910180..23911508) /locus_tag="TCM_029697" /note="paralog of Thecc1EG031775t1" /codon_start=1 /product="D-mannose binding lectin protein with Apple-like carbohydrate-binding domain, putative" /protein_id="EOY27998.1" /db_xref="Phytozome:PGSC0003DMP400018104" /db_xref="TAIR:AT1G78830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39688" /translation="MHCSFPSFSLALFTLLFFILCSSNVANAKVPPSRTFKYINEGDL GEYSVEYFADYRALPIYLFPFQLCFYNTTPNAYTLALRMGHRRSESIMRWVWEANRGR PVGENATLTLGSEGNLVLADADGTVVWQTGTAIKGVVGLKLLANGNLVLYDKKGKFIW QSFDHPTDTLLVGQALRSNGPNKLVSRTSTADGSEGPHSFVMEQRYLKLYYKSKYSPS PLLYYRSDEFGNGQGSLANLKFYSMPETEQAYAFELGFTFDMNNSSSSGTHILSRPKY NSTYSMLRVESDGNLKIYTFNENVDWGAWENTFKLFDGYDHESLCNLPKRCGSLGICE DNQCVACPKPKGLLGWSKNCTPPLLPPCKGGANVGYYKVVGVEHFTNAYVEGDGPMKL SDCRTKCSNDCGCMGFFYREESSKCLQVPELGTLVKVSNPAHVGYIKMPK" gene 23914896..23921826 /locus_tag="TCM_029698" /note="dbxref CacaoGD:Thecc1EG029698" mRNA join(23914896..23915456,23915671..23915834, 23916664..23916787,23916887..23917019,23917343..23917410, 23917574..23920058,23920175..23920279,23920726..23920833, 23920935..23921826) /locus_tag="TCM_029698" /product="SCAR family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29900.m001625" /inference="similar to AA sequence:Phytozome:POPTR_0004s05600.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6881t2" mRNA join(23915250..23915456,23915671..23915834, 23916664..23916787,23916887..23917019,23917343..23917410, 23917574..23920058,23920178..23920279,23920726..23920833, 23920935..23921377) /locus_tag="TCM_029698" /product="SCAR family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29900.m001625" /inference="similar to AA sequence:Phytozome:POPTR_0004s05600.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6881t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6881t2" CDS join(23915302..23915456,23915671..23915834, 23916664..23916787,23916887..23917019,23917343..23917410, 23917574..23920058,23920175..23920279,23920726..23920833, 23920935..23920985) /locus_tag="TCM_029698" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="SCAR family protein, putative isoform 1" /protein_id="EOY27999.1" /db_xref="Phytozome:POPTR_0004s05600.1" /db_xref="TAIR:AT1G29170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S9B2" /translation="MPLVRAQVRNEYGLGQPELYKEANREDPKAVLDGVAVAGLVGIL RQLGDLAEFAAEVFHGLQEQVMSTASRSHKLMIRVQRIEAALPPLEKAVLAQTSHIHF AYTAGSEWHPRIHNEKNHFIYNDLPRFIMDSYEVCRDPPCLHLLDKFDAGGKGSCMKR YSDPTYFKRASGSCIEEDAEKVPRDKKTRKSKKRRSSHRNGELSRVASLSNRSGRMQY TSPIVNGRTSSSQTASTVDMALKSDMGEHSTSFDSRTGSGYINCVLNLGSSMLPEEQE HKEVSSRLMQETDTLSSDFPVGQTQVVDDNFSHSSSQEQIALSSYCVTWDEKAEIVES KAGNWDGDEAPEMNFDVDVQESGPANLGNGDQTDIPFNDTDAPQSSSIDNQNDEIESE PDNYMDALNTIESESENDIECHTKREVELCSENDVECQTKWEVEQIDDANAVNNENRE DGMHAVMDSNANHHPSIIESSASSDILSNNGMSMSLSDPVPSENFASEQIPQISGKAP DPDHSPGTDLCMSDEIHNGSQVESAISDPSSSSGSTISDMQDLVSDRIINNVSDSEYS HTEFSGVHSVGFWTNGGLLGLQPSKPPDFAVSTAGQSFAAKSSEAFGPPNQTLMPIHD GPKGNTGTVVENAESAEKVPSSCSEKTSLPIADLAANLEKAVSSQCDNNLDNFNGAGL SLNTSLPHGNKHPVNPNIKATSVESDEENDDNSSRMFGLGHKLLVNGFRRKVSIAHYG ESEPATSTKTGVLEPRNGHQSILYQKIPRTTFDEQIGNGSPVNSLTSSPPLEHMKISF NPIDGFETSKLRLQFPDGNHYQESVRDMFPSFQLVPGPVVPVHDVGSDSDDDTFCRSS PYMSDDCLSHCSESNSEQWESGETPESKDPALYDALSRLSSVESVSSSLHFGEAANNG IHVNGGHKSVVPGIGAEPSLPLSLDLPSFDAINPILQDETNSNSVHKNQPELQNSTDV TPLPPPPPPVQWRVSKPCLDETEERQHALSESLRHELDLKLFSAVSVESKPPSDDQQQ ISDEAIALKPEKKQVDQENLNRQKEANQVSSGRGVDEKEDFLHQIRTKSFNLRPTATA KPTVTSGPTTNVKVTAILQKANAIRQAVGSDDGEDDDNWSDT" CDS join(23915302..23915456,23915671..23915834, 23916664..23916787,23916887..23917019,23917343..23917410, 23917574..23920058,23920178..23920279,23920726..23920833, 23920935..23920985) /locus_tag="TCM_029698" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="SCAR family protein, putative isoform 2" /protein_id="EOY28000.1" /db_xref="Phytozome:POPTR_0004s05600.1" /db_xref="TAIR:AT1G29170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S9B2" /translation="MPLVRAQVRNEYGLGQPELYKEANREDPKAVLDGVAVAGLVGIL RQLGDLAEFAAEVFHGLQEQVMSTASRSHKLMIRVQRIEAALPPLEKAVLAQTSHIHF AYTAGSEWHPRIHNEKNHFIYNDLPRFIMDSYEVCRDPPCLHLLDKFDAGGKGSCMKR YSDPTYFKRASGSCIEEDAEKVPRDKKTRKSKKRRSSHRNGELSRVASLSNRSGRMQY TSPIVNGRTSSSQTASTVDMALKSDMGEHSTSFDSRTGSGYINCVLNLGSSMLPEEQE HKEVSSRLMQETDTLSSDFPVGQTQVVDDNFSHSSSQEQIALSSYCVTWDEKAEIVES KAGNWDGDEAPEMNFDVDVQESGPANLGNGDQTDIPFNDTDAPQSSSIDNQNDEIESE PDNYMDALNTIESESENDIECHTKREVELCSENDVECQTKWEVEQIDDANAVNNENRE DGMHAVMDSNANHHPSIIESSASSDILSNNGMSMSLSDPVPSENFASEQIPQISGKAP DPDHSPGTDLCMSDEIHNGSQVESAISDPSSSSGSTISDMQDLVSDRIINNVSDSEYS HTEFSGVHSVGFWTNGGLLGLQPSKPPDFAVSTAGQSFAAKSSEAFGPPNQTLMPIHD GPKGNTGTVVENAESAEKVPSSCSEKTSLPIADLAANLEKAVSSQCDNNLDNFNGAGL SLNTSLPHGNKHPVNPNIKATSVESDEENDDNSSRMFGLGHKLLVNGFRRKVSIAHYG ESEPATSTKTGVLEPRNGHQSILYQKIPRTTFDEQIGNGSPVNSLTSSPPLEHMKISF NPIDGFETSKLRLQFPDGNHYQESVRDMFPSFQLVPGPVVPVHDVGSDSDDDTFCRSS PYMSDDCLSHCSESNSEQWESGETPESKDPALYDALSRLSSVESVSSSLHFGEAANNG IHVNGGHKSVVPGIGAEPSLPLSLDLPSFDAINPILQDETNSNSVHKNQPELQNSTDV TPLPPPPPPVQWRVSKPCLDETEERQHALSESLRHELDLKLFSAVSVESKPPSDDQQQ ISDEAIALKPEKKVDQENLNRQKEANQVSSGRGVDEKEDFLHQIRTKSFNLRPTATAK PTVTSGPTTNVKVTAILQKANAIRQAVGSDDGEDDDNWSDT" mRNA join(<23915805..23915834,23916664..23916787, 23916887..23917019,23917343..23917410,23917574..23920058, 23920726..23920833,23920935..>23920961) /locus_tag="TCM_029698" /product="SCAR family protein, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:29900.m001625" /inference="similar to AA sequence:Phytozome:POPTR_0004s05600.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc809t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6881t2" mRNA join(23915805..23915834,23916664..23916787, 23916887..23917019,23917343..23917410,23917574..23920056, 23920177..23920279,23920726..23920961) /locus_tag="TCM_029698" /product="SCAR family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29900.m001625" /inference="similar to AA sequence:Phytozome:POPTR_0004s05600.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc809t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6881t2" CDS join(<23915807..23915834,23916664..23916787, 23916887..23917019,23917343..23917410,23917574..23920058, 23920726..23920833,23920935..>23920961) /locus_tag="TCM_029698" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="SCAR family protein, putative isoform 4" /protein_id="EOY28002.1" /db_xref="Phytozome:POPTR_0004s05600.1" /db_xref="TAIR:AT1G29170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S9B2" /translation="SHIHFAYTAGSEWHPRIHNEKNHFIYNDLPRFIMDSYEVCRDPP CLHLLDKFDAGGKGSCMKRYSDPTYFKRASGSCIEEDAEKVPRDKKTRKSKKRRSSHR NGELSRVASLSNRSGRMQYTSPIVNGRTSSSQTASTVDMALKSDMGEHSTSFDSRTGS GYINCVLNLGSSMLPEEQEHKEVSSRLMQETDTLSSDFPVGQTQVVDDNFSHSSSQEQ IALSSYCVTWDEKAEIVESKAGNWDGDEAPEMNFDVDVQESGPANLGNGDQTDIPFND TDAPQSSSIDNQNDEIESEPDNYMDALNTIESESENDIECHTKREVELCSENDVECQT KWEVEQIDDANAVNNENREDGMHAVMDSNANHHPSIIESSASSDILSNNGMSMSLSDP VPSENFASEQIPQISGKAPDPDHSPGTDLCMSDEIHNGSQVESAISDPSSSSGSTISD MQDLVSDRIINNVSDSEYSHTEFSGVHSVGFWTNGGLLGLQPSKPPDFAVSTAGQSFA AKSSEAFGPPNQTLMPIHDGPKGNTGTVVENAESAEKVPSSCSEKTSLPIADLAANLE KAVSSQCDNNLDNFNGAGLSLNTSLPHGNKHPVNPNIKATSVESDEENDDNSSRMFGL GHKLLVNGFRRKVSIAHYGESEPATSTKTGVLEPRNGHQSILYQKIPRTTFDEQIGNG SPVNSLTSSPPLEHMKISFNPIDGFETSKLRLQFPDGNHYQESVRDMFPSFQLVPGPV VPVHDVGSDSDDDTFCRSSPYMSDDCLSHCSESNSEQWESGETPESKDPALYDALSRL SSVESVSSSLHFGEAANNGIHVNGGHKSVVPGIGAEPSLPLSLDLPSFDAINPILQDE TNSNSVHKNQPELQNSTDVTPLPPPPPPVQWRVSKPCLDETEERQHALSESLRHELDL KLFSAVSVESKPPSDDQQQISDEAIALKPEKKSFNLRPTATAKPTVTSGPTTNVKVTA ILQKANAIRQAVGSDDGED" mRNA join(23915809..23915834,23916653..23916787, 23916887..23917019,23917343..23917410,23917574..23920056, 23920177..23920277) /locus_tag="TCM_029698" /product="SCAR family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29900.m001625" /inference="similar to AA sequence:Phytozome:POPTR_0004s05600.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc758t10; alternateUTRof:Thecc1EG029698t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6881t2" CDS join(23916735..23916787,23916887..23917019, 23917343..23917410,23917574..23920056,23920177..23920196) /locus_tag="TCM_029698" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="SCAR family protein, putative isoform 3" /protein_id="EOY28001.1" /db_xref="Phytozome:POPTR_0004s05600.1" /db_xref="TAIR:AT1G29170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S9B2" /translation="MDSYEVCRDPPCLHLLDKFDAGGKGSCMKRYSDPTYFKRASGSC IEEDAEKVPRDKKTRKSKKRRSSHRNGELSRVASLSNRSGRMQYTSPIVNGRTSSSQT ASTVDMALKSDMGEHSTSFDSRTGSGYINCVLNLGSSMLPEEQEHKEVSSRLMQETDT LSSDFPVGQTQVVDDNFSHSSSQEQIALSSYCVTWDEKAEIVESKAGNWDGDEAPEMN FDVDVQESGPANLGNGDQTDIPFNDTDAPQSSSIDNQNDEIESEPDNYMDALNTIESE SENDIECHTKREVELCSENDVECQTKWEVEQIDDANAVNNENREDGMHAVMDSNANHH PSIIESSASSDILSNNGMSMSLSDPVPSENFASEQIPQISGKAPDPDHSPGTDLCMSD EIHNGSQVESAISDPSSSSGSTISDMQDLVSDRIINNVSDSEYSHTEFSGVHSVGFWT NGGLLGLQPSKPPDFAVSTAGQSFAAKSSEAFGPPNQTLMPIHDGPKGNTGTVVENAE SAEKVPSSCSEKTSLPIADLAANLEKAVSSQCDNNLDNFNGAGLSLNTSLPHGNKHPV NPNIKATSVESDEENDDNSSRMFGLGHKLLVNGFRRKVSIAHYGESEPATSTKTGVLE PRNGHQSILYQKIPRTTFDEQIGNGSPVNSLTSSPPLEHMKISFNPIDGFETSKLRLQ FPDGNHYQESVRDMFPSFQLVPGPVVPVHDVGSDSDDDTFCRSSPYMSDDCLSHCSES NSEQWESGETPESKDPALYDALSRLSSVESVSSSLHFGEAANNGIHVNGGHKSVVPGI GAEPSLPLSLDLPSFDAINPILQDETNSNSVHKNQPELQNSTDVTPLPPPPPPVQWRV SKPCLDETEERQHALSESLRHELDLKLFSAVSVESKPPSDDQQQISDEAIALKPEKRW TKRI" CDS join(23916735..23916787,23916887..23917019, 23917343..23917410,23917574..23920056,23920177..23920196) /locus_tag="TCM_029698" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="SCAR family protein, putative isoform 3" /protein_id="EOY28003.1" /db_xref="Phytozome:POPTR_0004s05600.1" /db_xref="TAIR:AT1G29170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S9B2" /translation="MDSYEVCRDPPCLHLLDKFDAGGKGSCMKRYSDPTYFKRASGSC IEEDAEKVPRDKKTRKSKKRRSSHRNGELSRVASLSNRSGRMQYTSPIVNGRTSSSQT ASTVDMALKSDMGEHSTSFDSRTGSGYINCVLNLGSSMLPEEQEHKEVSSRLMQETDT LSSDFPVGQTQVVDDNFSHSSSQEQIALSSYCVTWDEKAEIVESKAGNWDGDEAPEMN FDVDVQESGPANLGNGDQTDIPFNDTDAPQSSSIDNQNDEIESEPDNYMDALNTIESE SENDIECHTKREVELCSENDVECQTKWEVEQIDDANAVNNENREDGMHAVMDSNANHH PSIIESSASSDILSNNGMSMSLSDPVPSENFASEQIPQISGKAPDPDHSPGTDLCMSD EIHNGSQVESAISDPSSSSGSTISDMQDLVSDRIINNVSDSEYSHTEFSGVHSVGFWT NGGLLGLQPSKPPDFAVSTAGQSFAAKSSEAFGPPNQTLMPIHDGPKGNTGTVVENAE SAEKVPSSCSEKTSLPIADLAANLEKAVSSQCDNNLDNFNGAGLSLNTSLPHGNKHPV NPNIKATSVESDEENDDNSSRMFGLGHKLLVNGFRRKVSIAHYGESEPATSTKTGVLE PRNGHQSILYQKIPRTTFDEQIGNGSPVNSLTSSPPLEHMKISFNPIDGFETSKLRLQ FPDGNHYQESVRDMFPSFQLVPGPVVPVHDVGSDSDDDTFCRSSPYMSDDCLSHCSES NSEQWESGETPESKDPALYDALSRLSSVESVSSSLHFGEAANNGIHVNGGHKSVVPGI GAEPSLPLSLDLPSFDAINPILQDETNSNSVHKNQPELQNSTDVTPLPPPPPPVQWRV SKPCLDETEERQHALSESLRHELDLKLFSAVSVESKPPSDDQQQISDEAIALKPEKRW TKRI" gene 23924849..23926342 /locus_tag="TCM_029699" /note="dbxref CacaoGD:Thecc1EG029699" mRNA join(23924849..23925378,23925728..23926342) /locus_tag="TCM_029699" /product="Dof-domain transcription factor protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025807t2" /inference="similar to AA sequence:Phytozome:GSVIVT01021212001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1498t1_C1" CDS join(23924913..23925378,23925728..23925771) /locus_tag="TCM_029699" /note="paralog of Thecc1EG025807t2" /codon_start=1 /product="Dof-domain transcription factor protein" /protein_id="EOY28004.1" /db_xref="Phytozome:GSVIVT01021212001" /db_xref="TAIR:AT2G34140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6M8H3" /translation="MVMASQEGQGIKLFGTTIALHGRQVKEEQNKADHPALDKRPDKI IPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKPPGR DLGGFAEGCLYDGSSGVHQFELEGMALDEWQVAAANGGFRQIFPMKRRRISCSGQNQP TEESMIQFN" gene complement(23927437..23929074) /locus_tag="TCM_029700" /note="dbxref CacaoGD:Thecc1EG029700" mRNA complement(join(23927437..23927709,23928634..23929074)) /locus_tag="TCM_029700" /product="RNA binding protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029701t1" /inference="similar to AA sequence:ricco:29900.m001623" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc2126t1_C2" CDS complement(join(23927598..23927709,23928634..23929034)) /locus_tag="TCM_029700" /note="dbxref ricco:29900.m001623; paralog of Thecc1EG029701t1" /codon_start=1 /product="RNA binding protein, putative" /protein_id="EOY28005.1" /translation="MDFKYDDPIEICKKEEGFSGIYYKAKYLAAMGSNKYLVRYDTWL TEDGYSPIVEAVDADEIRPLPPKSAHNIVVSDKVDAYVNLAWRVGTVIRKVDSNYHVK LDCDGKEAHCAFYNVRLHHEWRDGSWFDPESGSQSSQASTSAQGGQPATEGSIADTGD QGRQPKNEGD" gene complement(23930129..23933229) /locus_tag="TCM_029701" /note="dbxref CacaoGD:Thecc1EG029701" mRNA complement(join(23930129..23930939,23931056..23931185, 23931297..23931493,23931576..23931663,23932249..23932281, 23932480..23933229)) /locus_tag="TCM_029701" /product="RNA binding-like protein" /inference="alignment:exonerate- protein:2:ricco:29900.m001623" /inference="similar to AA sequence:ricco:29900.m001623" /note="quality class is medium, express is medium, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1440t3_C2" CDS complement(join(23930801..23930939,23931056..23931185, 23931297..23931493,23931576..23931663,23932249..23932281, 23932480..23933149)) /locus_tag="TCM_029701" /note="dbxref ricco:29900.m001623" /codon_start=1 /product="RNA binding-like protein" /protein_id="EOY28006.1" /translation="MAKTVGFHIKKKRSLHKALKFRLSLIYSLPISRISLNRLKPCPE PSLLHVLQGSKTMDFKHEDPVEICKKGEGFSGIYYNATFLAAIGRNRYLVRYDTRFNE DGYRKLVEAVDSDEIRPLPPKTAYTKFVVSDRVEAYVNLAWRVGTVTRKVDPNYYVKL DCNGREEHCAFYKVRLHLEWRNGRWSYPGSGYVALFSVVCLTSCQVLWVLVLLISRFF VKHLPGNKKVTYSSLEDAEMADKNCHYKGNCTKEAILYRIGHPNHPIKSLGVTSKNRT FTENSPEASKPQHYKKEQTGIRRKHQHLTVGSNFIKGRYVSDHPLFPPHPWQGSGFET QRTAFMGSLSRISPKLGTRDEAENKTTDSLSFLCSLSHRSQSSQANTSAQGGQPATGG NIADTGDQGGQPKNEGDQPKPGQGRG" gene complement(23933974..23934979) /locus_tag="TCM_029702" /note="dbxref CacaoGD:Thecc1EG029702" mRNA complement(join(23933974..23934601,23934748..23934979)) /locus_tag="TCM_029702" /product="Olee1-like protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021211001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031770t1" /inference="similar to AA sequence:ricco:29900.m001621" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g11090t00001" CDS complement(join(23934258..23934601,23934748..23934916)) /locus_tag="TCM_029702" /note="dbxref ricco:29900.m001621; paralog of Thecc1EG031770t1" /codon_start=1 /product="Olee1-like protein" /protein_id="EOY28007.1" /db_xref="TAIR:AT1G29140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49813" /translation="MATSPKAIFFLASALCFLSLLGIVDAQAPEQFFVEGKVYCDNCR AQFVTKISKYMAGAQVRLECRDREGGDITYSVDGETDESGTYHIKVEGDHEEEICEVS LVQSSDPECSEIDKENFLRKSARISLTKYSGITSDSRLANPLGFMVKKPLPECTEVLR ELGITADGFV" gene complement(23935599..23938882) /locus_tag="TCM_029703" /note="dbxref CacaoGD:Thecc1EG029703" mRNA complement(join(23935599..23935970,23936099..23936159, 23936890..23937038,23937132..23937241,23938057..23938144, 23938240..23938546,23938642..23938724)) /locus_tag="TCM_029703" /product="General regulatory factor 9, MU isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g33800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001703t2" /inference="similar to AA sequence:Phytozome:Glyma12g33800.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12213t00001" mRNA complement(join(23935653..23935970,23936099..23936156, 23936890..23937038,23937132..23937241,23938057..23938144, 23938240..23938546,23938642..23938843)) /locus_tag="TCM_029703" /product="General regulatory factor 9, MU isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g33800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034892t1" /inference="similar to AA sequence:Phytozome:Glyma12g33800.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6930t2; inference alignment:Newbler:10:TSA:cgbaB_g12213t00001" CDS complement(join(23936110..23936156,23936890..23937038, 23937132..23937241,23938057..23938144,23938240..23938546, 23938642..23938714)) /locus_tag="TCM_029703" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG034892t1" /codon_start=1 /product="General regulatory factor 9, MU isoform 2" /protein_id="EOY28009.1" /db_xref="Phytozome:Glyma12g33800.2" /db_xref="TAIR:AT2G42590.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P42643" /translation="MEFSRERENLVYIAKLAEQAERFEDMVATMKKLAELDVELTVEE RNLLSVGYKNVIGARRASWRILSSIEQKEETKGNEQNVKQIKGYRQKVELELSNICKD IMGVINEHLIPSCMGGESTVFYYKMKGDYYRYFAEFKMGDERNEAADQSMKAYQSATT TAEAELAPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYK DSTLIMQLLRDNLTLWTSDISEDGEAQKIGAAKGGDGEE" CDS complement(join(23936110..23936159,23936890..23937038, 23937132..23937241,23938057..23938144,23938240..23938546, 23938642..23938714)) /locus_tag="TCM_029703" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG001703t2" /codon_start=1 /product="General regulatory factor 9, MU isoform 1" /protein_id="EOY28008.1" /db_xref="Phytozome:Glyma12g33800.1" /db_xref="TAIR:AT2G42590.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P42643" /translation="MEFSRERENLVYIAKLAEQAERFEDMVATMKKLAELDVELTVEE RNLLSVGYKNVIGARRASWRILSSIEQKEETKGNEQNVKQIKGYRQKVELELSNICKD IMGVINEHLIPSCMGGESTVFYYKMKGDYYRYFAEFKMGDERNEAADQSMKAYQSATT TAEAELAPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYK DSTLIMQLLRDNLTLWTSDISEDGEEAQKIGAAKGGDGEE" mRNA complement(join(23936764..23937241,23938057..23938144, 23938240..23938546,23938642..23938882)) /locus_tag="TCM_029703" /product="General regulatory factor 12, IOTA isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g33800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011563t2" /inference="similar to AA sequence:Phytozome:Glyma12g33800.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc25t2; inference alignment:Newbler:10:TSA:cgbaB_g12213t00001" CDS complement(join(23936879..23937241,23938057..23938144, 23938240..23938546,23938642..23938714)) /locus_tag="TCM_029703" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG011563t2" /codon_start=1 /product="General regulatory factor 12, IOTA isoform 3" /protein_id="EOY28010.1" /db_xref="Phytozome:Glyma12g33800.1" /db_xref="TAIR:AT1G26480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P42643" /translation="MEFSRERENLVYIAKLAEQAERFEDMVATMKKLAELDVELTVEE RNLLSVGYKNVIGARRASWRILSSIEQKEETKGNEQNVKQIKGYRQKVELELSNICKD IMGVINEHLIPSCMGGESTVFYYKMKGDYYRYFAEFKMGDERNEAADQSMKAYQSATT TAEAELAPTHPIRLGLALNFSVFYYEIMNSPERYACCFLCSNFLVELFLDNCGTPCYV LNLYTRACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDISEDGGDF " gene complement(23939645..23943531) /locus_tag="TCM_029704" /note="dbxref CacaoGD:Thecc1EG029704" mRNA complement(join(23939645..23940006,23940090..23940187, 23940282..23940450,23940617..23940673,23940794..23940836, 23941046..23941209,23941455..23941721,23941865..23941935, 23942016..23942083,23942329..23942476,23942832..23943531)) /locus_tag="TCM_029704" /product="Hydrolase-like protein family isoform 3" /inference="alignment:exonerate- protein:2:ricco:29900.m001618" /inference="similar to AA sequence:ricco:29900.m001618" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b028729t1a3; inference alignment:Newbler:10:TSA:cgbaL_g07080t00001" mRNA complement(join(23939799..23940006,23940090..23940187, 23940282..23940450,23940617..23940669,23940781..23940836, 23941046..23941209,23941455..23941721,23941865..23941935, 23942016..23942083,23942329..23942476,23942832..23943531)) /locus_tag="TCM_029704" /product="Hydrolase-like protein family isoform 1" /inference="alignment:exonerate- protein:2:ricco:29900.m001618" /inference="similar to AA sequence:ricco:29900.m001618" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07080t00001" CDS complement(join(23939899..23940006,23940090..23940187, 23940282..23940450,23940617..23940673,23940794..23940836, 23941046..23941209,23941455..23941721,23941865..23941935, 23942016..23942083,23942329..23942476,23942832..23943000)) /locus_tag="TCM_029704" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29900.m001618" /codon_start=1 /product="Hydrolase-like protein family isoform 3" /protein_id="EOY28013.1" /db_xref="TAIR:AT1G29120.5" /db_xref="UniProtKB/TrEMBL:UniRef50_C0Z2A9" /translation="MAMASLIQAGCGYSPIFSNNSNNCSFRTGSFGPFGCSSPSSSCT CSSSSHNLDFRSGTNNNWKHQGHRAQAMSTAPQGNFASSKSISNGKNEPDHLLVLVHG ILASPSDWTYVEAELKRRLGRNFLIYASSCNTYTKTLTGVDGAGKRLADEVLQVVKKT ESLKKISFLAHSLGGLFARYAVAVLYTENDSSGTQSDKVTDSSEGNLQTSRPSRRGTI AGLEAVSFITLATPHLGVRGRKQLPFLLGVPILEKLAPPIAPFFVGRTGKQLFLTDGK PNRPPLLLRMASDCEDGKFLSALGAFRCRIAYANIDMVGWRTSSIRREKELVKPPLRS LDGYKHVVDVDYCPPVSSDGPSFPPEAAKAKEAAQNAPNVQNTVEYHELMEEEMIQGL QKVGWKKVDVSFHSALWPFFAHNNIHVKNEWFHNAGAGVVAHVADSLKQQESSSPFIS ASL" CDS complement(join(23939899..23940006,23940090..23940187, 23940282..23940450,23940617..23940669,23940781..23940836, 23941046..23941209,23941455..23941721,23941865..23941935, 23942016..23942083,23942329..23942476,23942832..23943000)) /locus_tag="TCM_029704" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29900.m001618" /codon_start=1 /product="Hydrolase-like protein family isoform 1" /protein_id="EOY28011.1" /db_xref="TAIR:AT1G29120.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C0Z2A9" /translation="MAMASLIQAGCGYSPIFSNNSNNCSFRTGSFGPFGCSSPSSSCT CSSSSHNLDFRSGTNNNWKHQGHRAQAMSTAPQGNFASSKSISNGKNEPDHLLVLVHG ILASPSDWTYVEAELKRRLGRNFLIYASSCNTYTKTLTGVDGAGKRLADEVLQVVKKT ESLKKISFLAHSLGGLFARYAVAVLYTENDSSGTQSDKVTDSSEGNLQTSRPSRRGTI AGLEAVSFITLATPHLGVRGRKQLPFLLGVPILEKLAPPIAPFFVGRTGKQLFLTDGK PNRPPLLLRMASDCEDGKFLSALGAFRCRIAYANVSYDHMVGWRTSSIRREKELVKPP LRSLDGYKHVVDVDYCPPVSSDGPSFPPEAAKAKEAAQNAPNVQNTVEYHELMEEEMI QGLQKVGWKKVDVSFHSALWPFFAHNNIHVKNEWFHNAGAGVVAHVADSLKQQESSSP FISASL" mRNA complement(join(23940034..23940187,23940282..23940450, 23940617..23940669,23940781..23940836,23941046..23941209, 23941455..23941721,23941865..23941935,23942016..23942083, 23942329..23942476,23942832..23943531)) /locus_tag="TCM_029704" /product="Hydrolase-like protein family isoform 2" /inference="alignment:exonerate- protein:2:ricco:29900.m001618" /inference="similar to AA sequence:ricco:29900.m001618" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:PASA:2:TSA:puevd3b028729t1a2; inference alignment:Newbler:10:TSA:cgbaL_g07080t00001" CDS complement(join(23940072..23940187,23940282..23940450, 23940617..23940669,23940781..23940836,23941046..23941209, 23941455..23941721,23941865..23941935,23942016..23942083, 23942329..23942476,23942832..23943000)) /locus_tag="TCM_029704" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29900.m001618" /codon_start=1 /product="Hydrolase-like protein family isoform 2" /protein_id="EOY28012.1" /db_xref="TAIR:AT1G29120.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C0Z2A9" /translation="MAMASLIQAGCGYSPIFSNNSNNCSFRTGSFGPFGCSSPSSSCT CSSSSHNLDFRSGTNNNWKHQGHRAQAMSTAPQGNFASSKSISNGKNEPDHLLVLVHG ILASPSDWTYVEAELKRRLGRNFLIYASSCNTYTKTLTGVDGAGKRLADEVLQVVKKT ESLKKISFLAHSLGGLFARYAVAVLYTENDSSGTQSDKVTDSSEGNLQTSRPSRRGTI AGLEAVSFITLATPHLGVRGRKQLPFLLGVPILEKLAPPIAPFFVGRTGKQLFLTDGK PNRPPLLLRMASDCEDGKFLSALGAFRCRIAYANVSYDHMVGWRTSSIRREKELVKPP LRSLDGYKHVVDVDYCPPVSSDGPSFPPEAAKAKEAAQNAPNVQNTVEYHELMEEEMI QGLQKVGWKKVDVSFHSALWPFFAHNNIHVVSPS" mRNA complement(join(23940087..23940187,23940282..23940450, 23940617..23940669,23941455..23941721,23941865..23941935, 23942016..23942083,23942329..23942476,23942832..23943446)) /locus_tag="TCM_029704" /product="Hydrolase-like protein family isoform 4" /inference="alignment:exonerate- protein:2:ricco:29900.m001618" /inference="similar to AA sequence:ricco:29900.m001618" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc402t9; inference alignment:Newbler:10:TSA:cgbaL_g07080t00001" CDS complement(join(23940179..23940187,23940282..23940450, 23940617..23940669,23941455..23941721,23941865..23941935, 23942016..23942083,23942329..23942476,23942832..23943000)) /locus_tag="TCM_029704" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29900.m001618" /codon_start=1 /product="Hydrolase-like protein family isoform 4" /protein_id="EOY28014.1" /db_xref="TAIR:AT1G29120.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ARF5" /translation="MAMASLIQAGCGYSPIFSNNSNNCSFRTGSFGPFGCSSPSSSCT CSSSSHNLDFRSGTNNNWKHQGHRAQAMSTAPQGNFASSKSISNGKNEPDHLLVLVHG ILASPSDWTYVEAELKRRLGRNFLIYASSCNTYTKTLTGVDGAGKRLADEVLQVVKKT ESLKKISFLAHSLGGLFARYAVAVLYTENDSSGTQSDKVTDSSEGNLQTSRPSRRGTI AGLEAVSFITLATPHLGVRGRKQIWLAGAHPPSGGRKNLLSPHYDLWMVTNMLWMWTT VHQFLLMAPVFLPKLPKQRRQHRMHLTYKTQSNIMNSWKRK" gene complement(23944703..23945740) /locus_tag="TCM_029705" /note="dbxref CacaoGD:Thecc1EG029705" mRNA complement(join(23944703..23945228,23945416..23945491, 23945710..23945740)) /locus_tag="TCM_029705" /product="Heavy metal transport/detoxification superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29900.m001617" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041609t1" /inference="similar to AA sequence:ricco:29900.m001617" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6811t2" CDS complement(join(23944879..23945228,23945416..23945491, 23945710..23945715)) /locus_tag="TCM_029705" /note="dbxref ricco:29900.m001617; paralog of Thecc1EG041609t1" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein" /protein_id="EOY28015.1" /db_xref="TAIR:AT1G06330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N278" /translation="MAIVEMKVHMDCEGCVAKIRKALGKLKGIDSIEIDMGMQKVTVM GWAASDQKKILKTVRKTGRRAELWPYPYHPENQFYYDYYQSQPVVTYHATGRPSSYNY YKHGYDGHDHGYYQPPPYSTLMDQQASSVFSDENPHACSIM" gene 23948423..23949027 /locus_tag="TCM_029706" /note="dbxref CacaoGD:Thecc1EG029706" mRNA 23948423..23949027 /locus_tag="TCM_029706" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021207001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001699t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400018048" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6809t1" CDS 23948492..23948902 /locus_tag="TCM_029706" /note="paralog of Thecc1EG001699t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28016.1" /db_xref="Phytozome:PGSC0003DMP400018048" /db_xref="TAIR:AT4G24130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3C8" /translation="MAEKEGGIVKKGHDEGMKMATTLLEEFGLPKGLLPLADVIEVGF VRNTGFMWIVQKNKVEHNFKLISKLVSYATEITGFVDKKRIKKLKGVKAKELMLWPPV NEIVADDPPTGKIHFKSLAGVTKTFPAEAFDAGQ" gene complement(23949190..23950110) /locus_tag="TCM_029707" /note="dbxref CacaoGD:Thecc1EG029707" mRNA complement(join(23949190..23949793,23949994..23950023)) /locus_tag="TCM_029707" /product="Dual specificity protein phosphatase-related isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g009140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024066t1" /inference="similar to AA sequence:Phytozome:GSVIVT01026941001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc3773t1; alternateUTRof:Thecc1EG029707t1; inference alignment:Newbler:10:TSA:cgbaP2_g16450t00001" mRNA complement(join(23949211..23949772,23949994..23950110)) /locus_tag="TCM_029707" /product="Dual specificity protein phosphatase-related isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g009140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024066t1" /inference="similar to AA sequence:Phytozome:GSVIVT01026941001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g16450t00001" CDS complement(23949398..23949772) /locus_tag="TCM_029707" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG024066t1" /codon_start=1 /product="Dual specificity protein phosphatase-related isoform 1" /protein_id="EOY28017.1" /db_xref="Phytozome:GSVIVT01026941001" /db_xref="TAIR:AT4G18593.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UCC2" /translation="MEEANVMDSEAVQKPKVIYRCKKCRRIVASEESIVPHERGKGEQ CFKWRKRSGEKEPAQCSSIFVEPLKWMQPVQEGYVEEKLQCMGCKARLGSFNWAGMQC NCGAWVNPAFQLHKNRLDECHM" CDS complement(23949398..23949772) /locus_tag="TCM_029707" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG024066t1" /codon_start=1 /product="Dual specificity protein phosphatase-related isoform 1" /protein_id="EOY28018.1" /db_xref="Phytozome:GSVIVT01026941001" /db_xref="TAIR:AT4G18593.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UCC2" /translation="MEEANVMDSEAVQKPKVIYRCKKCRRIVASEESIVPHERGKGEQ CFKWRKRSGEKEPAQCSSIFVEPLKWMQPVQEGYVEEKLQCMGCKARLGSFNWAGMQC NCGAWVNPAFQLHKNRLDECHM" gene 23952795..23954291 /locus_tag="TCM_029708" /note="dbxref CacaoGD:Thecc1EG029708" mRNA join(23952795..23953046,23953109..23953285, 23953376..23954291) /locus_tag="TCM_029708" /product="Senescence-associated gene 12, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001814t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05510.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc4493t1" CDS join(23952845..23953046,23953109..23953285, 23953376..23953965) /locus_tag="TCM_029708" /note="paralog of Thecc1EG001814t1" /codon_start=1 /product="Senescence-associated gene 12, putative" /protein_id="EOY28019.1" /db_xref="Phytozome:POPTR_0004s05510.1" /db_xref="TAIR:AT5G45890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38886" /translation="MAENLCQNICLAFLLVLSIWNSLALCRLLNQEHMLKRHEEWMAL NSRIYADAAEKEKRYAIFKENVEHLTNEEFRSLHTGFNRQSPKLMSHSKSSTFRYGNA TAGPTVVDWRRKGAVTSVKDQGTCGCCWAFSAVAAIEGLTQLKKGKLISLSEQQLVDC DIKGEDEGCEGGLMDNAFQFIKTNRGLTTEANYPYRGSEGECKNKHATPAATIAGYED VPANNEKALLQAVANQPVSVAIEGSGWAFQFYESGVFSGECGTYLDHAVTAIGYGTSS DGTKYWMVKNSWGTDWGEKGFMRLKRDVTAKQGLCGVAMKASYPIA" mobile_element 23954987..23955938 /note="source:INTACT639F_F363_scaffold_5-int 7467 8454" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23956085..23956399 /note="source:INTACT639F_F363_scaffold_5-int 8238 8573" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(23956392..23957990) /locus_tag="TCM_029709" /note="dbxref CacaoGD:Thecc1EG029709" mRNA complement(join(23956392..23957433,23957503..23957990)) /locus_tag="TCM_029709" /product="Senescence-associated gene 12" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021195001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001814t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07520.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2044t1" CDS complement(join(23956841..23957433,23957503..23957926)) /locus_tag="TCM_029709" /note="paralog of Thecc1EG001814t1" /codon_start=1 /product="Senescence-associated gene 12" /protein_id="EOY28020.1" /db_xref="Phytozome:POPTR_0011s07520.1" /db_xref="TAIR:AT5G45890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38886" /translation="MASTSRSLALLFIVGIWACQASSRSVPEVSMSDRFEQWLASCGR VYQDASEKEKRLQIFKENVEYIESHNADTSKKYKLGVNEFTDLTNEEFKAMRNGYKLR PSTSSKKSSFRYENVAAVPSSMDWRKKGAVTNIKDQGQCGCCWAFSAVAAMEGINQLK TGKLISLSEQELVDCDINGEDQGCNGGFMDNAFEFIISNKGLTTESNYPYEGVDGSCN KKKAANHAAQITSFEDVPSNSEAALLKAVANQPVSVAIDAGGSDFQHYKSGIFTGECS TFLDHGVTAVGYGTADDGTKYWLVKNSWGTSWGEDGYIRMQRDIDAEEGLCGIAMEAS YPTA" gene complement(23958891..23965343) /locus_tag="TCM_029710" /note="dbxref CacaoGD:Thecc1EG029710" mRNA complement(join(23958891..23959902,23960025..23960180, 23960319..23960486,23960567..23960706,23960804..23960921, 23961031..23961258,23961852..23961992,23962110..23962175, 23962497..23962589,23962672..23963192,23965263..23965343)) /locus_tag="TCM_029710" /product="Ketol-acid reductoisomerase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g36730.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046686t1" /inference="similar to AA sequence:ricco:29900.m001612" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6963t2" CDS complement(join(23959537..23959902,23960025..23960180, 23960319..23960486,23960567..23960706,23960804..23960921, 23961031..23961258,23961852..23961992,23962110..23962175, 23962497..23962589,23962672..23962983)) /locus_tag="TCM_029710" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29900.m001612; paralog of Thecc1EG046686t1" /codon_start=1 /product="Ketol-acid reductoisomerase isoform 1" /protein_id="EOY28021.1" /db_xref="TAIR:AT3G58610.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q05758" /translation="MAATTTSFKASLSFAPSISPSPSSNTKSTAHKLRFTSSSWYSPT LNSLIAPHVPTNNNASSNGGRSSLSAKMISVPSSISPTTSLDFHTSVFKKEKISLAGH DEYIVRGGRHLFPLLGDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL RKGSRSFAEARAAGFTEENGTLGDIWETIAGSDLVLLLISDSAQADNYEKVFSHMKPN SILGLSHGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASF AVHQGVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGVVECLF RRYVENGMSEDLAYKNTVECITGIVSRTISTKGMLAVYNSLSEEGKKRFEAVYSASYY PCMEILYECYEDVASGSEIRSVVLAGRRFHEKEGLPAFPMGKIDQTRMWKVGERVRAT RSKDDLGPLCPFTSGVFVALMMAQIEVLRKKGHSYSEIINESLIEAVDSLNPFMHARG VSFMVDNCSTTARLGSRKWAPRFDYILTQQAFVAVDSGAPINQDLISNFLSDPVHGAI EVCAQLRPTVDISVPPDADFVRPELRQSS" mRNA complement(join(23959759..23959902,23960025..23960180, 23960319..23960706,23960804..23960921,23961031..23961258, 23961852..23961992,23962110..23962175,23962497..23962589, 23962672..23963084)) /locus_tag="TCM_029710" /product="Ketol-acid reductoisomerase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g36730.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046686t1" /inference="similar to AA sequence:ricco:29900.m001612" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc189t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6963t2" CDS complement(join(23960078..23960180,23960319..23960706, 23960804..23960921,23961031..23961258,23961852..23961992, 23962110..23962175,23962497..23962589,23962672..23962983)) /locus_tag="TCM_029710" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29900.m001612; paralog of Thecc1EG046686t1" /codon_start=1 /product="Ketol-acid reductoisomerase isoform 2" /protein_id="EOY28022.1" /db_xref="TAIR:AT3G58610.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q05758" /translation="MAATTTSFKASLSFAPSISPSPSSNTKSTAHKLRFTSSSWYSPT LNSLIAPHVPTNNNASSNGGRSSLSAKMISVPSSISPTTSLDFHTSVFKKEKISLAGH DEYIVRGGRHLFPLLGDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL RKGSRSFAEARAAGFTEENGTLGDIWETIAGSDLVLLLISDSAQADNYEKVFSHMKPN SILGLSHGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASF AVHQGVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGVVECLF RRYVENGMSEDLAYKNTVECITGIVSRTISTKVISVACSAFSFFWSLYLWICFSVCFC RVCWLCTTHCLKKAKSDLRLFIVPHIILAWKSFMSVMKMLQAEARFAVSFWLGVVFMK RRVYLPSRWVKLIRHGCGKLVSVSEQQDQKMI" mobile_element complement(23962199..23962242) /note="source:INTACT423_F7_scaffold_6-int 5499 5539" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23965406..23969103 /locus_tag="TCM_029711" /note="dbxref CacaoGD:Thecc1EG029711" mRNA join(23965406..23966282,23968370..23969103) /locus_tag="TCM_029711" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001690t1" /inference="similar to AA sequence:frave:gene29828" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1312t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6826t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1537t1_C1" mRNA join(23965425..23966282,23966937..23967023, 23967400..23967468,23968370..23969051) /locus_tag="TCM_029711" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05490.1" /inference="similar to AA sequence:frave:gene29828" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6826t1" CDS join(23965953..23966282,23966937..23967023, 23967400..23967468,23968370..23968846) /locus_tag="TCM_029711" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene29828" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /protein_id="EOY28023.1" /db_xref="TAIR:AT3G56770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IQN9" /translation="MFRMAAYSFNNNFSSGNCYSGLFNPLSRDMGPRNGSSHGGSLSV LVSQTLVLDSEKGELVKAPVKVGKKSVSEEKVIAALKSHSEAEKRRRERINAHLDTLR GLLPCREKRALMAKVAFSHGIVLIICCPPREKKENEAKFTERKEEDSLYVWICSMLTK LEMDKATLLGEVIRQVKELKKNATEASKGFLVPMDDDEVRVEPCEDEANGILLFKASI CCDYRPELLTDLRRALDALPIKMVKAETSTLGSRLKNDFVFAGCRTAHADEAEARRFL ACSIHQALNSVLEKASASPEYSPSSIFPNKRRRMSHFDSSSSSS" CDS join(23965953..23966282,23968370..23968846) /locus_tag="TCM_029711" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene29828; paralog of Thecc1EG001690t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2" /protein_id="EOY28024.1" /db_xref="TAIR:AT3G56770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IQN9" /translation="MFRMAAYSFNNNFSSGNCYSGLFNPLSRDMGPRNGSSHGGSLSV LVSQTLVLDSEKGELVKAPVKVGKKSVSEEKVIAALKSHSEAEKRRRERINAHLDTLR GLLPCREKMDKATLLGEVIRQVKELKKNATEASKGFLVPMDDDEVRVEPCEDEANGIL LFKASICCDYRPELLTDLRRALDALPIKMVKAETSTLGSRLKNDFVFAGCRTAHADEA EARRFLACSIHQALNSVLEKASASPEYSPSSIFPNKRRRMSHFDSSSSSS" mobile_element 23969242..23969424 /note="source:CACAO_PIF_E119_scaffold_3 4479 4662" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 23970030..23976465 /locus_tag="TCM_029712" /note="dbxref CacaoGD:Thecc1EG029712" mRNA join(23970030..23970441,23970849..23971066, 23971170..23971361,23971455..23971509,23971655..23971749, 23971915..23972104,23972213..23972318,23972420..23972564, 23972637..23972795,23972896..23973084,23973228..23973428, 23973522..23973637,23973774..23973933,23974463..23975061, 23976318..23976465) /locus_tag="TCM_029712" /product="ThiF family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene29829" /inference="similar to AA sequence:Phytozome:GSVIVT01021202001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6879t2" mRNA join(23970030..23970441,23970849..23970877, 23970973..23971066,23971170..23971361,23971455..23971509, 23971655..23971749,23971915..23972104,23972213..23972318, 23972420..23972564,23972637..23972795,23972896..23973084, 23973228..23973428,23973522..23973637,23973774..23973933, 23974463..23975061,23976318..23976465) /locus_tag="TCM_029712" /product="ThiF family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene29829" /inference="similar to AA sequence:Phytozome:GSVIVT01021202001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b028737t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6879t2" mRNA join(23970189..23970441,23970849..23971066, 23971170..23971361,23971455..23971509,23971655..23971749, 23971915..23972104,23972213..23972318,23972420..23972564, 23972637..23972795,23972896..23973084,23973228..23973428, 23973522..23973933,23974463..23974585) /locus_tag="TCM_029712" /product="ThiF family protein isoform 4" /inference="alignment:exonerate-protein:2:frave:gene29829" /inference="similar to AA sequence:Phytozome:GSVIVT01021202001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc633t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6879t2" mRNA join(23970189..23970441,23970849..23970877, 23970973..23971066,23971170..23971361,23971459..23971509, 23971655..23971749,23971915..23972104,23972213..23972318, 23972420..23972564,23972637..23972795,23972896..23973084, 23973228..23973428,23973522..23973637,23973774..23973933, 23974463..>23974585) /locus_tag="TCM_029712" /product="ThiF family protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene29829" /inference="similar to AA sequence:Phytozome:GSVIVT01021202001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc633t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6879t2" CDS join(23970306..23970441,23970849..23971066, 23971170..23971361,23971455..23971509,23971655..23971749, 23971915..23972104,23972213..23972318,23972420..23972564, 23972637..23972795,23972896..23973084,23973228..23973428, 23973522..23973637,23973774..23973933,23974463..23974636) /locus_tag="TCM_029712" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ThiF family protein isoform 1" /protein_id="EOY28025.1" /db_xref="Phytozome:GSVIVT01021202001" /db_xref="TAIR:AT5G45900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HM90" /translation="MAKEGSGSILQFAPFQSSVDEGFWHRLSSLKLNKFGIDDSPIPI SGFFAPCSHPQVSNYLTLLAESLPSDSNEESSIPAFNRGNRNRCSVPGILYNTNTMES FHGLDKQGLLKAEAKKIWEDIHSGKVLEDSAVLSRFLLISFADLKKWSFHYWFAFPAL ILDPPATLVDLRPASQWFTLEEAESVSTACNEWRNSSVTADVPFILVSVGSDSRAAVR HLKDWETCQDDGQKLLFAFYDPCHLPNNPGWALRNFLAFICARWNLKTVHFLCYRENR GFADLSLSLVGEALITISQGWREHQCVPNAVGWELNKGRKVPRCINLAKSMDPTRLAI SAADLNLKLMRWRALPSLNLDILFSIKCLLLGAGTLGCQVARMLMAWGVRKITLVDNG RVAMSNPLRQSLYTLDDCLSGGDFKATAAVRSLQRIFPAVVAEGVVMAIPMPGHPVSS QEENSVLEDCRRLNDLIGSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFDSFL VMRHGPGPFNSTPDLKVEMPNSLSAVMDNLALTNTDGKQRLGCYFCNDVVAPTDSTSN RTLDQQCTVTRPGLAPIASALAVELLVGILHHPYGIFAEAEIANSNNGGSSELPLGIL PHQIRGSLPHFQQMTLVGHSSNSCTACCCTVVSEYRKRGMQFILQAINHPTFLEDLTG LTELMRSANTFQLDWDDEIEDADDECIEL" CDS join(23970306..23970441,23970849..23971066, 23971170..23971361,23971455..23971509,23971655..23971749, 23971915..23972104,23972213..23972318,23972420..23972564, 23972637..23972795,23972896..23973084,23973228..23973428, 23973522..23973641) /locus_tag="TCM_029712" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="ThiF family protein isoform 4" /protein_id="EOY28028.1" /db_xref="Phytozome:GSVIVT01021202001" /db_xref="TAIR:AT5G45900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HM90" /translation="MAKEGSGSILQFAPFQSSVDEGFWHRLSSLKLNKFGIDDSPIPI SGFFAPCSHPQVSNYLTLLAESLPSDSNEESSIPAFNRGNRNRCSVPGILYNTNTMES FHGLDKQGLLKAEAKKIWEDIHSGKVLEDSAVLSRFLLISFADLKKWSFHYWFAFPAL ILDPPATLVDLRPASQWFTLEEAESVSTACNEWRNSSVTADVPFILVSVGSDSRAAVR HLKDWETCQDDGQKLLFAFYDPCHLPNNPGWALRNFLAFICARWNLKTVHFLCYRENR GFADLSLSLVGEALITISQGWREHQCVPNAVGWELNKGRKVPRCINLAKSMDPTRLAI SAADLNLKLMRWRALPSLNLDILFSIKCLLLGAGTLGCQVARMLMAWGVRKITLVDNG RVAMSNPLRQSLYTLDDCLSGGDFKATAAVRSLQRIFPAVVAEGVVMAIPMPGHPVSS QEENSVLEDCRRLNDLIGSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFDSFL VMRHGPGPFNSTPDLKVEMPNSLSAVMDNLALTNTDGKQRLGCYFCNDVVAPTDSTSN RTLDQQCTVTRPGLAPIASALAVELLVGILHHPYG" CDS join(23971010..23971066,23971170..23971361, 23971455..23971509,23971655..23971749,23971915..23972104, 23972213..23972318,23972420..23972564,23972637..23972795, 23972896..23973084,23973228..23973428,23973522..23973637, 23973774..23973933,23974463..23974636) /locus_tag="TCM_029712" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ThiF family protein isoform 2" /protein_id="EOY28026.1" /db_xref="Phytozome:GSVIVT01021202001" /db_xref="TAIR:AT5G45900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HM90" /translation="MESFHGLDKQGLLKAEAKKIWEDIHSGKVLEDSAVLSRFLLISF ADLKKWSFHYWFAFPALILDPPATLVDLRPASQWFTLEEAESVSTACNEWRNSSVTAD VPFILVSVGSDSRAAVRHLKDWETCQDDGQKLLFAFYDPCHLPNNPGWALRNFLAFIC ARWNLKTVHFLCYRENRGFADLSLSLVGEALITISQGWREHQCVPNAVGWELNKGRKV PRCINLAKSMDPTRLAISAADLNLKLMRWRALPSLNLDILFSIKCLLLGAGTLGCQVA RMLMAWGVRKITLVDNGRVAMSNPLRQSLYTLDDCLSGGDFKATAAVRSLQRIFPAVV AEGVVMAIPMPGHPVSSQEENSVLEDCRRLNDLIGSHDVIFLLTDTRESRWLPTLLCA NTNKITITAALGFDSFLVMRHGPGPFNSTPDLKVEMPNSLSAVMDNLALTNTDGKQRL GCYFCNDVVAPTDSTSNRTLDQQCTVTRPGLAPIASALAVELLVGILHHPYGIFAEAE IANSNNGGSSELPLGILPHQIRGSLPHFQQMTLVGHSSNSCTACCCTVVSEYRKRGMQ FILQAINHPTFLEDLTGLTELMRSANTFQLDWDDEIEDADDECIEL" CDS join(23971343..23971361,23971459..23971509, 23971655..23971749,23971915..23972104,23972213..23972318, 23972420..23972564,23972637..23972795,23972896..23973084, 23973228..23973428,23973522..23973637,23973774..23973933, 23974463..>23974585) /locus_tag="TCM_029712" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="ThiF family protein isoform 3" /protein_id="EOY28027.1" /db_xref="Phytozome:GSVIVT01021202001" /db_xref="TAIR:AT5G45900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HM90" /translation="MVHLGRESVSTACNEWRNSSVTADVPFILVSVGSDSRAAVRHLK DWETCQDDGQKLLFAFYDPCHLPNNPGWALRNFLAFICARWNLKTVHFLCYRENRGFA DLSLSLVGEALITISQGWREHQCVPNAVGWELNKGRKVPRCINLAKSMDPTRLAISAA DLNLKLMRWRALPSLNLDILFSIKCLLLGAGTLGCQVARMLMAWGVRKITLVDNGRVA MSNPLRQSLYTLDDCLSGGDFKATAAVRSLQRIFPAVVAEGVVMAIPMPGHPVSSQEE NSVLEDCRRLNDLIGSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFDSFLVMR HGPGPFNSTPDLKVEMPNSLSAVMDNLALTNTDGKQRLGCYFCNDVVAPTDSTSNRTL DQQCTVTRPGLAPIASALAVELLVGILHHPYGIFAEAEIANSNNGGSSELPLGILPHQ IRGSLPHFQQMTLVGHSSNSCTACCCTVVSEYRKRGMQFILQAINHPTFLEDLTGLTE LMRSANTFQL" gene complement(23975518..23976171) /locus_tag="TCM_029713" /note="dbxref CacaoGD:Thecc1EG029713" mRNA complement(23975518..23976171) /locus_tag="TCM_029713" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" CDS complement(23975660..23975917) /locus_tag="TCM_029713" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28029.1" /translation="MGGEALGGQILPNPIQVGQICCTVALGSYIFVCCRPDSLQFKPT ASKIVVSPNILWLARGKANVAGNFNFRDQKTKWFLSFELNT" gene 23978736..23985440 /locus_tag="TCM_029714" /note="dbxref CacaoGD:Thecc1EG029714" mRNA join(23978736..23979292,23981046..23982238, 23983349..23983505,23984543..23984725,23985220..23985440) /locus_tag="TCM_029714" /product="ARM repeat superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29900.m001608" /inference="similar to AA sequence:Phytozome:POPTR_0004s05460.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08187t00001" CDS join(23978835..23979292,23981046..23981892) /locus_tag="TCM_029714" /codon_start=1 /product="ARM repeat superfamily protein" /protein_id="EOY28030.1" /db_xref="Phytozome:POPTR_0004s05460.1" /db_xref="TAIR:AT2G27430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2J3" /translation="MSPSQTQNMSSTSSSSIWLLSYRKLKFFTRIRRFLQSKAARKRY GSSSDHSNKLTIKNSTDKEEERMEKESEPEGDSVVLQKSVKGLHFGSWEEKEMAAKAI EKLAKEDVKARKLMAELGVTHMLVSMMATEVVGRRRAAMKALIELANGNFRNKALMLE AGILSKLPKDIDGVDEQTRQEFAELLLSLSSISNTHFSLSTPEILQFVIGILESASSL ETKEYCLGVLYNLSAVLENAGPLVSNGVMPSLLKLSSLKELSEKALAALGHLVVTLMG KKAMEDSSVVPESLIDILTWEDKPKCQELSAYILMILAHQSSKQRDKMSKAGIVHVLL EVSLLGSPLAQKRAIKLLQWFKDERQAKMGPHSGPQTGRFAIGSPLHPRESQEGKKMM KNLVKQSLHKNMEMITRRANAAADASKLKSLVLSTSSKSLPY" gene 23983390..23986902 /locus_tag="TCM_029715" /note="dbxref CacaoGD:Thecc1EG029715" mRNA join(23983390..23983505,23984543..23984725, 23985220..23985619,23985872..23986023,23986180..23986766) /locus_tag="TCM_029715" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16610t1" mobile_element 23983616..23984258 /note="source:CACAO_PIF_E8_scaffold_1 427 1065" /mobile_element_type="transposon:TIR/PIF-Harbinger" mRNA join(23984279..23984452,23984543..23984725, 23985220..23985619,23985872..23986023,23986180..23986902) /locus_tag="TCM_029715" /product="Uncharacterized protein isoform 1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc775t1; alternateUTRof:Thecc1EG029715t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16610t1" mRNA join(23984605..23984725,23985220..23985619, 23985872..23986023,23986180..23986517) /locus_tag="TCM_029715" /product="Uncharacterized protein isoform 1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05618t00001; alternateUTRof:Thecc1EG029715t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16610t1" CDS join(23984633..23984725,23985220..23985619, 23985872..23986023,23986180..23986350) /locus_tag="TCM_029715" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY28031.1" /translation="MDSKSKGIAWVGNIYQKFEAMCMEVDDMVCEETFRCVENHLQTV GANVKQFCTEFMQDVLHSPGAKSVEERNLSLVQNTGVTVCENLNITIDEDKSQKELIH SSSVQSVDDVHFGLSSEQSTKDESALAHSGSIPSDSVILAQACKNELQDTDSTLDDAS LETMEEASHQSATEVELEAALPSFDEAKLEESCIIVDSGDLQSLSNETGKRRSYKKKF RESLSSKLRLRKQDREQHAGSSAEKGMNVGRSSQTDKAKSQDMEFCESDWELV" CDS join(23984633..23984725,23985220..23985619, 23985872..23986023,23986180..23986350) /locus_tag="TCM_029715" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY28032.1" /translation="MDSKSKGIAWVGNIYQKFEAMCMEVDDMVCEETFRCVENHLQTV GANVKQFCTEFMQDVLHSPGAKSVEERNLSLVQNTGVTVCENLNITIDEDKSQKELIH SSSVQSVDDVHFGLSSEQSTKDESALAHSGSIPSDSVILAQACKNELQDTDSTLDDAS LETMEEASHQSATEVELEAALPSFDEAKLEESCIIVDSGDLQSLSNETGKRRSYKKKF RESLSSKLRLRKQDREQHAGSSAEKGMNVGRSSQTDKAKSQDMEFCESDWELV" CDS join(23984633..23984725,23985220..23985619, 23985872..23986023,23986180..23986350) /locus_tag="TCM_029715" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY28033.1" /translation="MDSKSKGIAWVGNIYQKFEAMCMEVDDMVCEETFRCVENHLQTV GANVKQFCTEFMQDVLHSPGAKSVEERNLSLVQNTGVTVCENLNITIDEDKSQKELIH SSSVQSVDDVHFGLSSEQSTKDESALAHSGSIPSDSVILAQACKNELQDTDSTLDDAS LETMEEASHQSATEVELEAALPSFDEAKLEESCIIVDSGDLQSLSNETGKRRSYKKKF RESLSSKLRLRKQDREQHAGSSAEKGMNVGRSSQTDKAKSQDMEFCESDWELV" mRNA join(23984700..23984725,23985287..23985619, 23985872..23986023,23986180..23986902) /locus_tag="TCM_029715" /product="Uncharacterized protein isoform 4" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc741t5; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16610t1" CDS join(23985292..23985619,23985872..23986023, 23986180..23986350) /locus_tag="TCM_029715" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY28034.1" /translation="MQDVLHSPGAKSVEERNLSLVQNTGVTVCENLNITIDEDKSQKE LIHSSSVQSVDDVHFGLSSEQSTKDESALAHSGSIPSDSVILAQACKNELQDTDSTLD DASLETMEEASHQSATEVELEAALPSFDEAKLEESCIIVDSGDLQSLSNETGKRRSYK KKFRESLSSKLRLRKQDREQHAGSSAEKGMNVGRSSQTDKAKSQDMEFCESDWELV" gene 23986813..23999253 /locus_tag="TCM_029716" /note="dbxref CacaoGD:Thecc1EG029716" mRNA join(23986813..23987161,23987304..23987420, 23987789..23987921,23988220..23988316,23988577..23988620, 23989088..23989244,23989522..23989593,23990464..23990547, 23990747..23990848,23991498..23991545,23991708..23991833, 23992109..23992201,23992677..23992757,23994914..23995280, 23995362..23995910,23997804..23998214,23998310..23999253) /locus_tag="TCM_029716" /product="Maternal effect embryo arrest 18" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s07510.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07510.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6877t4" CDS join(23986978..23987161,23987304..23987420, 23987789..23987921,23988220..23988316,23988577..23988620, 23989088..23989244,23989522..23989593,23990464..23990547, 23990747..23990848,23991498..23991545,23991708..23991833, 23992109..23992201,23992677..23992757,23994914..23995280, 23995362..23995910,23997804..23998214,23998310..23998902) /locus_tag="TCM_029716" /codon_start=1 /product="Maternal effect embryo arrest 18" /protein_id="EOY28035.1" /db_xref="Phytozome:POPTR_0011s07510.1" /db_xref="TAIR:AT2G34090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IGV3" /translation="MADSCLGPFFYKTPPPSPPRPPLFLLQIPRLPLHFPSKSMAAHC HCSSNPRPSQPSLLVFSGGTAFNGVVEELKKLTVRVAHVLPVSDDGGSTAEIVRVLGG PAVGDIRSRCLRLADQSTSEALAVRRLLGHRLPINPQQAKSEWYKIVEGGHSLWEGVS KPYRETIRAFLAYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRV SDIPAESLVLPVISTNGRLTLGCELWDGTIIRGQNEISHPTNGSMGPVDKGRSSVPAL PSRIKRVFYMSSEGTNSLHEVFPTVNPAVLEQLSNVDCIVYAMGSLFTSLCPSLVLLG IGEIISSRSCPKVLLLNGTHDRETTGFSASSFVTAITDALNRTYGDSHNCLKKLPNQY INTLLVPKDGEIPIDVQCLSSQGIFDVVIVDSIRDPKVGVIFDSESLINALGNVAMSR TLHEAAIANKHEQWMARYGRVYESQSEKDRRFMIFKDNLEYIENFNNAANRTYKLGIN EFADLTHDEFLAARTGYKMLDNPTTTITASFRYATMTEVPTSLDWRQQGAVTPVKDQG SCGCCWAFSAVAAMEAITQIKTGKLISMSEQQLLDCSTNGGNQGCNGGWMTNAFQYIM ENQGLTTEENYPYEEMQGTCAIEKATAQVADISDYEQVPSNDEEALLKAVTNQPVSVA IDGSGRDFKFYSGGVFSGDCDTSLTHAVTIIGYGTSEDGTKYWLIKNSWGQSWGENGY MRIQRDVDNPEEKFLIAMVILLGTLASAMPRRLDETVLFEKYQQWMTRHGRTYEKKEE ENWRFEIFKDNLEFVEKFNMGNQTYKLSINQFADLTNEEFRASYAGYKILTRRVPPKS KRFKYENQTDVPASMDWRKKGAVTHIKDQGSCKSCWAFSTITAVEGIAKIKTGQLISL SAQQLVDCVKTKDTDGCSGGWMDDAFAYIVKNQGLASETKYPYTSNDGTCSPRKAAIR IVKIKGYEDVPPKNEEALRKAASQQPVSVSLNGGGRNFQFYSEGVFTGHCGTSLDHAV TIVGYGTSEDGVKYWLIKNSWGKSWGESGYMRIQRDIHSSKGLCGIAREPSYPVA" mobile_element complement(23999854..23999982) /note="source:scaffold_4_CACTA_0505 18542 18675" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24002069..24002432 /note="source:INTACT662_F291_scaffold_4-int 4356 4721" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24003358..24004077) /note="source:CACAO_MITE5_scaffold_1 2 735" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(24003940..24004099) /note="source:CACAO_PIF_E31_scaffold_2 4064 4220" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 24004453..24004859 /note="source:CACAO_MITE45_scaffold_3 283 713" /mobile_element_type="transposon:TIR/MITE" gene complement(24005577..24009010) /locus_tag="TCM_029718" /note="dbxref CacaoGD:Thecc1EG029718" mRNA complement(join(24005577..24005863,24008302..24009010)) /locus_tag="TCM_029718" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc4266t1" mobile_element 24006369..24007958 /note="source:INTACT58_F125_scaffold_5-int 14736 16333" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24007959..24009254 /note="source:INTACT641_F282_scaffold_1-int 4347 7373" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(24008527..24008691) /locus_tag="TCM_029718" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28036.1" /translation="MIDGLEGSGALGGRRSEEENCLGESRPLIDDAGARKRRSCRRRK ERRKSGRRLG" mobile_element complement(24011115..24011251) /note="source:CACAO_PIF_E119_scaffold_3 4238 4391" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 24011906..24012075 /note="source:scaffold_5_CACTA_0584 1511 1713" /mobile_element_type="transposon:TIR/CACTA" gene 24012365..24013819 /locus_tag="TCM_029720" /note="dbxref CacaoGD:Thecc1EG029720" mRNA join(24012365..24012966,24013077..24013819) /locus_tag="TCM_029720" /product="Senescence-associated gene 12, putative" /inference="alignment:exonerate- protein:2:TAIR:AT2G34080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029716t1" /inference="similar to AA sequence:ricco:29910.m000923" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc4600t1" CDS join(24012534..24012966,24013077..24013669) /locus_tag="TCM_029720" /note="dbxref ricco:29910.m000923; paralog of Thecc1EG029716t1" /codon_start=1 /product="Senescence-associated gene 12, putative" /protein_id="EOY28037.1" /db_xref="TAIR:AT5G45890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38886" /translation="MAFALKNKFLVFILIVSGALASAMSRTLSETVVAEKYKQWMAQY GRTYEMKEEENMRFEVFKNNLEYIENFNNMGNQPYKLSINEFADLTNEEFLAYYAGYK IIPSTVSSKTKRFKYQNLTNVPASIDWRNKGAVTQIKDQGHCGSCWAFSTVAAVEGIA KIKTGRLFSLSEQQLVDCVRTKGSQGCKGGWMHDAFEYIVKNHGLAEETRYPYKKKDG TCSPRKAAIKAVQILGYEDVPHKNEEALLKAASQQPVSVALDGNGTAFQFYSGGVFTG PCRTSLNHAVTVVGYGTSEDGSKYWLIKNSWGKSWGENGYMRIKRDFNSKKGLCGIAK RASYPVA" mobile_element 24015399..24016140 /note="source:CACAO_Again_on_E63_scaffold_2 1 761" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24017260..24017431) /note="source:scaffold_2_CACTA_0263 5434 5601" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24018142..24018256 /note="source:scaffold_7_CACTA_0793 3204 3316" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24018265..24018352 /note="source:scaffold_6_CACTA_0706 1398 1490" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24018480..24018649 /note="source:scaffold_5_CACTA_0591 7622 7781" /mobile_element_type="transposon:TIR/CACTA" gene complement(24020415..24021126) /locus_tag="TCM_029722" /note="dbxref CacaoGD:Thecc1EG029722" mRNA complement(join(24020415..24020740,24020825..24021126)) /locus_tag="TCM_029722" /product="50S ribosomal protein L34" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021193001" /inference="similar to AA sequence:Phytozome:GSVIVT01021193001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16611t1" CDS complement(join(24020484..24020740,24020825..24021044)) /locus_tag="TCM_029722" /codon_start=1 /product="50S ribosomal protein L34" /protein_id="EOY28038.1" /db_xref="Phytozome:GSVIVT01021193001" /db_xref="TAIR:AT1G29070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJJ7" /translation="MASMSVITSPQWLTAKSIRTQIPSASLALLTGSRGRISISPNAE NNPKACSSLLHCSFLPSSSSSVSCPSSFAGLSLGMDFSSNNGVRNEKRRGLVVRAGKA ALCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPNSGKRS" mobile_element complement(24026180..24026274) /note="source:CACAO_PIF_E144_scaffold_10 3544 3658" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 24026666..24030177 /locus_tag="TCM_029724" /note="dbxref CacaoGD:Thecc1EG029724" mRNA join(24026666..24027551,24027647..24027818, 24029249..24029424,24029514..24029672,24029796..24030122) /locus_tag="TCM_029724" /product="Trichome birefringence-like 37 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29900.m001601.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003734t1" /inference="similar to AA sequence:ricco:29900.m001601" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10065t00001" mRNA join(24026973..24027551,24027647..24027818, 24029249..24029424,24029514..24029672,24029796..24030177) /locus_tag="TCM_029724" /product="Trichome birefringence-like 37 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29900.m001601.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003734t1" /inference="similar to AA sequence:ricco:29900.m001601" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc87t1; alternateUTRof:Thecc1EG029724t1; inference alignment:Newbler:10:TSA:cgbaB_g10065t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc89t11" CDS join(24027259..24027551,24027647..24027818, 24029249..24029424,24029514..24029672,24029796..24030087) /locus_tag="TCM_029724" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29900.m001601; paralog of Thecc1EG003734t1" /codon_start=1 /product="Trichome birefringence-like 37 isoform 1" /protein_id="EOY28039.1" /db_xref="TAIR:AT2G34070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2J8" /translation="MGFRCKSLLCLFLLVLLVFLQKASAGQHYYNVTRFRGRKQENGC NLFQGKWVFDPSYPFYDSSGCPFIDPEFDCLKYGRPDKQYLKYSWKPDACDLPRFDGA SFLAKWRGKKIMFVGDSLSLNMWESLACMIHASVPNSKTTYVRKDPLSFVIFEDYAVT LYLYRTPYLVDIVRESVGAVLNLGSINGGNAWKGMDMLVFNSWHWWTHKGKSQAWDYI RDGSELYKDMDRFVAFNKGLTTWANWVDSNVDPTKTKVFFQGISPTHYEGREWNQPKK NCYGELEPLSGSTYPAGAPPAAAILNKVLGTMKKPVYLLDITTLSQLRKDAHPSTYSG EHSGNDCSHWCLPGLPDTWNQLLYAALVM" CDS join(24027259..24027551,24027647..24027818, 24029249..24029424,24029514..24029672,24029796..24030087) /locus_tag="TCM_029724" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29900.m001601; paralog of Thecc1EG003734t1" /codon_start=1 /product="Trichome birefringence-like 37 isoform 1" /protein_id="EOY28040.1" /db_xref="TAIR:AT2G34070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2J8" /translation="MGFRCKSLLCLFLLVLLVFLQKASAGQHYYNVTRFRGRKQENGC NLFQGKWVFDPSYPFYDSSGCPFIDPEFDCLKYGRPDKQYLKYSWKPDACDLPRFDGA SFLAKWRGKKIMFVGDSLSLNMWESLACMIHASVPNSKTTYVRKDPLSFVIFEDYAVT LYLYRTPYLVDIVRESVGAVLNLGSINGGNAWKGMDMLVFNSWHWWTHKGKSQAWDYI RDGSELYKDMDRFVAFNKGLTTWANWVDSNVDPTKTKVFFQGISPTHYEGREWNQPKK NCYGELEPLSGSTYPAGAPPAAAILNKVLGTMKKPVYLLDITTLSQLRKDAHPSTYSG EHSGNDCSHWCLPGLPDTWNQLLYAALVM" gene complement(24030142..24033170) /locus_tag="TCM_029725" /note="dbxref CacaoGD:Thecc1EG029725" mRNA complement(join(24030142..24030178,24030693..24030822, 24031209..24031375,24032158..24032269,24032527..24032603, 24032739..24033106)) /locus_tag="TCM_029725" /product="3R-hydroxymyristoyl- dehydratase-hydroxymyristoyl ACP dehydrase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021190001" /inference="similar to AA sequence:frave:gene29820" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc159t7" mRNA complement(join(24030795..24030834,24031209..24031375, 24032158..24032269,24032527..24032603,24032739..24033170)) /locus_tag="TCM_029725" /product="3R-hydroxymyristoyl- dehydratase-hydroxymyristoyl ACP dehydrase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021190001" /inference="similar to AA sequence:frave:gene29820" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc187t6_C2; alternateUTRof:Thecc1EG029725t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc159t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc89t4" CDS complement(join(24031246..24031375,24032158..24032269, 24032527..24032603,24032739..24033007)) /locus_tag="TCM_029725" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene29820" /codon_start=1 /product="3R-hydroxymyristoyl- dehydratase-hydroxymyristoyl ACP dehydrase isoform 1" /protein_id="EOY28041.1" /db_xref="TAIR:AT1G29040.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0JLA3" /translation="MSICLVSKLPSFTSTGSVSFAPKTYPSLSSKSLLFPIIQPPTRP RFQRPIIATAAMAAEKSGGTSTASKTSNPAMKLLFVEMGVGYDQHGQDITSAAMRACR DAISSNSIPAFRRGSIPGVSFDQMKLLIKLGVPHSLQQALDIERVKSVFPYGKILDVE VVDGGLICSSGVLVEEMGDKNDDCYIVNAAVYIGY" CDS complement(join(24031246..24031375,24032158..24032269, 24032527..24032603,24032739..24033007)) /locus_tag="TCM_029725" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene29820" /codon_start=1 /product="3R-hydroxymyristoyl- dehydratase-hydroxymyristoyl ACP dehydrase isoform 1" /protein_id="EOY28042.1" /db_xref="TAIR:AT1G29040.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0JLA3" /translation="MSICLVSKLPSFTSTGSVSFAPKTYPSLSSKSLLFPIIQPPTRP RFQRPIIATAAMAAEKSGGTSTASKTSNPAMKLLFVEMGVGYDQHGQDITSAAMRACR DAISSNSIPAFRRGSIPGVSFDQMKLLIKLGVPHSLQQALDIERVKSVFPYGKILDVE VVDGGLICSSGVLVEEMGDKNDDCYIVNAAVYIGY" mRNA complement(join(<24031346..24031384,24032158..24032269, 24032527..24032603,24032739..24033170)) /locus_tag="TCM_029725" /product="3R-hydroxymyristoyl- dehydratase-hydroxymyristoyl ACP dehydrase isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021190001" /inference="similar to AA sequence:frave:gene29820" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc187t1_C2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc159t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc89t4" mRNA complement(join(<24031346..24031393,24032158..24032269, 24032527..24032603,24032739..24033170)) /locus_tag="TCM_029725" /product="3R-hydroxymyristoyl- dehydratase-hydroxymyristoyl ACP dehydrase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021190001" /inference="similar to AA sequence:frave:gene29820" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc187t2_C2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc159t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc89t4" mRNA complement(join(24031347..24031375,24032178..24032269, 24032527..24032603,24032739..24033170)) /locus_tag="TCM_029725" /product="3R-hydroxymyristoyl- dehydratase-hydroxymyristoyl ACP dehydrase isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021190001" /inference="similar to AA sequence:Phytozome:POPTR_0011s07560.2" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc187t3_C2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc159t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc89t4" CDS complement(join(<24031348..24031384,24032158..24032269, 24032527..24032603,24032739..24033007)) /locus_tag="TCM_029725" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene29820" /codon_start=1 /product="3R-hydroxymyristoyl- dehydratase-hydroxymyristoyl ACP dehydrase isoform 4" /protein_id="EOY28044.1" /db_xref="TAIR:AT1G29040.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0JLA3" /translation="MSICLVSKLPSFTSTGSVSFAPKTYPSLSSKSLLFPIIQPPTRP RFQRPIIATAAMAAEKSGGTSTASKTSNPAMKLLFVEMGVGYDQHGQDITSAAMRACR DAISSNSIPAFRRGSIPGVSFDQMKLLIKLGVPHSLQQALDIERVKSVFPYVYSGKIL DVEVV" CDS complement(join(<24031348..24031393,24032158..24032269, 24032527..24032603,24032739..24033007)) /locus_tag="TCM_029725" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene29820" /codon_start=1 /product="3R-hydroxymyristoyl- dehydratase-hydroxymyristoyl ACP dehydrase isoform 3" /protein_id="EOY28043.1" /db_xref="TAIR:AT1G29040.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0JLA3" /translation="MSICLVSKLPSFTSTGSVSFAPKTYPSLSSKSLLFPIIQPPTRP RFQRPIIATAAMAAEKSGGTSTASKTSNPAMKLLFVEMGVGYDQHGQDITSAAMRACR DAISSNSIPAFRRGSIPGVSFDQMKLLIKLGVPHSLQQALDIERVKSVFPYFPIVYSG KILDVEVV" CDS complement(join(24031355..24031375,24032178..24032269, 24032527..24032603,24032739..24033007)) /locus_tag="TCM_029725" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="3R-hydroxymyristoyl- dehydratase-hydroxymyristoyl ACP dehydrase isoform 5" /protein_id="EOY28045.1" /db_xref="Phytozome:POPTR_0011s07560.2" /db_xref="TAIR:AT1G29040.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0JLA3" /translation="MSICLVSKLPSFTSTGSVSFAPKTYPSLSSKSLLFPIIQPPTRP RFQRPIIATAAMAAEKSGGTSTASKTSNPAMKLLFVEMGVGYDQHGQDITSAAMRACR DAISSNSIPAFRRGSIPGVSFDQMKLLIKLGVPHSLQQALDIERWKNFGR" gene complement(24033864..24038312) /locus_tag="TCM_029726" /note="dbxref CacaoGD:Thecc1EG029726" mRNA complement(join(24033864..24034844,24034932..24035066, 24035803..24035914,24036007..24036188,24036288..24036419, 24036904..24038236)) /locus_tag="TCM_029726" /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29900.m001599" /inference="similar to AA sequence:ricco:29900.m001599" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04766t00001" mRNA complement(join(24034316..24034844,24035803..24035914, 24036313..24036419,24036904..24038312)) /locus_tag="TCM_029726" /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29900.m001599" /inference="similar to AA sequence:Phytozome:POPTR_0004s05410.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc276t8_C1; inference alignment:Newbler:10:TSA:cgbaB_g04766t00001" CDS complement(join(24034716..24034844,24035803..24035914, 24036313..24036419,24036904..24038118)) /locus_tag="TCM_029726" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 2" /protein_id="EOY28047.1" /db_xref="Phytozome:POPTR_0004s05410.1" /db_xref="TAIR:AT4G18570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7S5" /translation="MVAGKVRLAMGLQKSPANPKHETPPKPPLPSPSSGNKNNTSQKA VFSRSFGVYFPRSSAQVQPRPPDVTELLRLVEELRERESRLKTELLEHKLLKESVAIV PVLENEIVAINAELERASKEIENLRNENETLKTEVEEMKEKIEEERKESEKKVREMEE EIAELKKTVLSYSDRNSKAEITVESDDLLSSSQRYQGLVEVSVKSNLIKNLKRNNSKC TDAVVVSTLNNEKVESLEFKREEFETERPRHSRCNSEELVDSTLVNIRSRVPRVPKPP PRPSSSSPSSSTSSISSSDSTEKQIPPPPPPPPPPAPVAAVKQVAPPPPPPPPIKAIA PPPPPPPPKGMRAIAAKVRRVPEVVEFYHSLMRRDSKREAGGCSVPEVLPATANARDM IGEIENRSTHLLAIKTDVETQGDFIRFLIKEVENAAFTDIEDVVPFVKWLEHGVYNLS RMRESATKRYKGFQIPMDWMLETGIVSQFAGGFDVETMRAFQELRDKARSCHVQCQSQ QQPKFICRSTTC" CDS complement(join(24034716..24034844,24034932..24035066, 24035803..24035914,24036007..24036188,24036288..24036419, 24036904..24038118)) /locus_tag="TCM_029726" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29900.m001599" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /protein_id="EOY28046.1" /db_xref="TAIR:AT4G18570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7S5" /translation="MVAGKVRLAMGLQKSPANPKHETPPKPPLPSPSSGNKNNTSQKA VFSRSFGVYFPRSSAQVQPRPPDVTELLRLVEELRERESRLKTELLEHKLLKESVAIV PVLENEIVAINAELERASKEIENLRNENETLKTEVEEMKEKIEEERKESEKKVREMEE EIAELKKTVLSYSDRNSKAEITVESDDLLSSSQRYQGLVEVSVKSNLIKNLKRNNSKC TDAVVVSTLNNEKVESLEFKREEFETERPRHSRCNSEELVDSTLVNIRSRVPRVPKPP PRPSSSSPSSSTSSISSSDSTEKQIPPPPPPPPPPAPVAAVKQVAPPPPPPPPIKAIA PPPPPPPPKGMRAIAAKVRRVPEVVEFYHSLMRRDSKREAGGCSVPEVLPATANARDM IGEIENRSTHLLAIKTDVETQGDFIRFLIKEVENAAFTDIEDVVPFVKWLDDELSYLV DERAVLKHFDWPEQKADALREAAFGYCDLKKLESEASLFRDDARQPCGPALKKMQALL EKLEHGVYNLSRMRESATKRYKGFQIPMDWMLETGIVSQIKLASVKLAMKYMRRVSAE LEAVGGGPEEEELIVQGVRFAFRVHQFAGGFDVETMRAFQELRDKARSCHVQCQSQQQ PKFICRSTTC" gene 24047166..24050413 /locus_tag="TCM_029727" /note="dbxref CacaoGD:Thecc1EG029727" mRNA join(24047166..24047291,24048269..24049015, 24049469..24050413) /locus_tag="TCM_029727" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29900.m001598" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029735t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07580.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc2653t1" CDS join(24048377..24049015,24049469..24050083) /locus_tag="TCM_029727" /note="paralog of Thecc1EG029735t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY28048.1" /db_xref="Phytozome:POPTR_0011s07580.1" /db_xref="TAIR:AT4G18550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49523" /translation="METLRILRKWFGKKKKAMGSSIAKRWKPLSGQNHWGELLDPLDI DLRRYIIHYGEMAQATYDAFNNEKASKFAGSSLYGKEDFFSKVNLEKGNPYRYQVTKF LYATSQIQLPEAFIVKSSSREAWSKESNWIGYVAVATDEGKDVLGRRDIVIAWRGTVQ TLEWINDIEFNLVSPEKIFGHERRDIKVHEGWYSIYTSEDSRSPYNKSSARDQVLNEV RRLVDQFKNEEISITVTGHSLGAALATLNAIDIVANGYNRPKSQSRKASPVTAFLFAS PRVGDSDFKKAFTGFKDLRALRVGNALDVVPNYPLVGYSDVGEELAIDTRKSKYLNSP GNLSSWHNLEAYLHGVAGTQGSKGGFALVVNRDIALVNKSIDGLKDEYLVPVSWRIEK NKGMVQQEDGSWKLMDHEGQDDVDP" gene 24051871..24053752 /locus_tag="TCM_029728" /note="dbxref CacaoGD:Thecc1EG029728" mRNA join(24051871..24052495,24052758..24053752) /locus_tag="TCM_029728" /product="Alpha/beta-Hydrolases superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029729t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05380.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS join(24051965..24052495,24052758..24053375) /locus_tag="TCM_029728" /note="paralog of Thecc1EG029729t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY28049.1" /db_xref="Phytozome:POPTR_0004s05380.1" /db_xref="TAIR:AT4G18550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N341" /translation="MASSIASRWRELSGEKNWEGLLHPLDLDLRRYIIHYLQRAGAAG DLFNNKKASKSYGLSLYPPDEYFSRAGLEIGNPYKYRVTNFIYGTVGTSQSEYFGFVA VATDEGKAVLGRRDILVSWRGSMTRADWSENIDFVPTSAKELFGTDLAQVHSGFLFIY AGKMADSLYNKTSARDQALKAVQEQVDKYQNEDVSITVTGHSLGAALATLNAMDIVAN SFNKPTGNSAKSSMVTAFPVASPRVGNLKFMEIFDELKDLHLLRIVNSIDPVPNVPIG FDYTHVGEELGIDTTKSTYLKSNVHPHNLDVYGHGVAGVQENGEFKLEEELEFDNAVV NKTGDCLLDEYKIPIEWWNNEKFKGMVQMDDGHWKFVDSAYVPDPPSA" gene 24053801..24059011 /locus_tag="TCM_029729" /note="dbxref CacaoGD:Thecc1EG029729" mRNA join(24053801..24053929,24057136..24057764, 24058042..24059011) /locus_tag="TCM_029729" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s05770.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029728t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05380.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1265t1" mobile_element 24054762..24054830 /note="source:scaffold_5_CACTA_0615 2017 2082" /mobile_element_type="transposon:TIR/CACTA" CDS join(24057237..24057764,24058042..24058659) /locus_tag="TCM_029729" /note="paralog of Thecc1EG029728t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY28050.1" /db_xref="Phytozome:POPTR_0004s05380.1" /db_xref="TAIR:AT4G18550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N341" /translation="MASFIASRWRELSGEKNWKGLLHPLDLDLRRYIIHYLQRAGAAG DIFNDNRASKSFGLSLYPPDEYFSRAGLEIGNPYKYRVTNFIYGAADNKSEYFGFVAV ATDEGKAVLGRRDILVSWRGTVTSADWNEDKNFFPTSAKELFGTDSAQVHSGFLSIYT GKLADSLYSKTSARDQALKAVQDQVDKYQNEEVSITVAGYSLGAALATLNAMDIVANG FNKPTGNSAKSFMVTAFPVASPRVGNQKFLEIFNELEDLHLLRIVNSTDHIPTVPVGF GYTHVGEELGIDTTKSTYLKSNADPHNLGVYGHGVAGVQENGEFKLEEELDFDNATVN KHGDCLLDKYKTPIEWWNNEKFKGMVQIDDGHWKFVDSAYVPDPPSA" mobile_element 24065533..24065673 /note="source:scaffold_2_CACTA_0273 5191 5329" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24065598..24066062 /note="source:CACAO_on_S_E46_scaffold_2 8427 8889" /mobile_element_type="transposon:TIR/Mutator" gene 24069871..24080422 /locus_tag="TCM_029731" /note="dbxref CacaoGD:Thecc1EG029731" mRNA join(24069871..24070368,24070864..24072215, 24072915..24073481,24073946..24076221,24079741..24080422) /locus_tag="TCM_029731" /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400038200.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044704t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1424t1_G4" CDS join(24069882..24070368,24070864..24072215, 24072915..24073481,24073946..24076221,24079741..24079951) /locus_tag="TCM_029731" /note="paralog of Thecc1EG044704t1" /codon_start=1 /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein" /protein_id="EOY28051.1" /translation="MEEEQRERMDRMERAQEEMREQLAKMMELMMSLSKGKRAIEEPA PSENPPAQDSGNQREDPPYPPGFTPPHAQTSQRVHPQVMPSIYYNAPPPLGHQPTQGQ FGPYLGINPAEPINVPDLDDPKEQEKLRKDSSQTGENEKDQKKYDLLEERLRAIEGVD RFDLVLSGETIEGAIKSGKIEGHEVVSSKKESTPKKKEGDVQAVAHDSQQAHDFNPYY PYPPYQPFYPHVGNITQNPYVYQPVPQPTFQTNVLPQTPPPRSVASTNNPGHGQRGPK ITPERPKFDPIPVPYTTLLPQLIENRLLARTPLXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXALIKAGLLNFAKKDSSGVDGNPLPNHGRSTLNAIHEGMIRRVKK GIDEIQTPMDKVFEALSKINAITPEPIDTKEVGHNLAYSCKFHMGAIGHSIQNCDGFR RKLQELMDSSIIEFYEGAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXTMIRNGITIEVPSPFPYKSDKAVSWNYECNILGTASSAPQASFEDLTGVGGIT RSGRCYSPEVVERVVKGKPAQEEGDLKKTDIFSKDQVDESVVTPNSEVKFIAEGQLIS VCVEEDILAIQPSSAPYVEATEEVPECSFRSFEFVNATYVGERKVIPTPRLSVATKMG VKQTVGKGCRAGLGLGKNLQGINRPLTPMKNEERFGLGYKPTKEERRKLTAQKKIKRM AQLEGKEEEFGKRTIPHLYETFRSTGFIHPEAPPKVSQVLRIFDELSIHMIRDEEPDG KIPVELTEMINLGNGEEKKEVKIGTSLSSDERQKLEELLREYVDVFAWSYQDMPGLNT DIVVHKLPLEPDCKPLKQKLRRMKLEMLLKIKEEVKRQFDAGFLEVAKYPQWVANIVP VPKKDGKVRMCVDYRDLNKASPKDSFPLPHIDTLVDNTAKHALFSFMDGFSGYNQIKM APEDMEKTTFVTMWGTFCYKVMPFGLKNAGATYQRAMVALFHDMMHKEIEVYVDDMIA KSHTERDHTVNLKKLFERLRKFQLKLNPAKCTFGVTSGKLLGFIVSEKGIEVDPDKIR AIQELPPPKTQKEVRGFLGRLNYIARFISQLTCKCDPIFKLLRKRDPGEWNEECQIAF DKIKEYLTNPPVLMPPTVGKPLILYLTVNKDSMGCVLGQHDETGKKERAVYYLSKKFM EYESKYSALEKMCCALAWTAQRLRQYMLYHTTWLVAKLDPIKYIFEKPCLSGRIARWQ VLLSEYDLVYVSQKSIKGSAIADFLADRANEDYESVSFDFPDEDLMAVLHVEKVGPNE LNPWKVFFDGASNALGHGIGAVLISPNGKYYPATARLNFNCTNNMAEYEALVLGLQAA IDMKADAIDVYGDSALVICQMKGEWETRDPKLVPYKKLVTELSKQFKEISFNHLPREE NQIADALATLAAMFQIKEAADVRPFDLEAREVSAHCLNVEEEVDGKPWYHDIMQYIKH QAYPENVTDNDKRTLRRLAMGFFLNGEVLYKRSRDQVLLRCVDVAEANKIMKEVHEGT CGAHANGHIEGFQGSTPKRRRLRESPEPKTVRLGEGQADQGSGPGRPPRSPDHLGHPS GPSKVRPYPFLVNLGSFSSF" gene 24076416..24077604 /locus_tag="TCM_029732" /note="dbxref CacaoGD:Thecc1EG029732" mRNA 24076416..24077604 /locus_tag="TCM_029732" /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400024743.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041414t1" /inference="similar to AA sequence:Phytozome:Glyma06g23600.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1424t1_G4" CDS 24076458..24077312 /locus_tag="TCM_029732" /note="paralog of Thecc1EG041414t1" /codon_start=1 /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H" /protein_id="EOY28052.1" /db_xref="Phytozome:Glyma06g23600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q2J0" /translation="MWGMDVIGLITPKASNGHRFILVAIDYFTKWVEAASYANVTQKV VCKFIQKEIICRYGLPERIITDNASNLNGAMVKDVCTKFKIKHHNSTTYRPKMNGAVE AANKNIKKIVEKMTEVYKDWHEKLPFALHAYRTSVRTSTGATPYSLVYGAEAVLPVEV EIPSLRVLMETELEDAEWVRSRYEQLNLIEEKRLAALCHGQMYQRRMMRAYEKKVHPR QFREGELVLKRILPNQTDFQGKWMPNWEGPYVVKKAFSGGALILANMDGGDLPNPINT DAVKKYYA" mobile_element complement(24078501..24081231) /note="source:INTACT60_F127_scaffold_9-int 1 2816" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24081232..24082003 /note="source:CACAO_M_S_E16721_F36_scaffold_2 3681 4448" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24082004..24082165 /note="source:INTACT674_F296_scaffold_6-int 5123 6011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24082833..24083269 /note="source:CACAO_M_S_E52027_F3_scaffold_5 6207 6656" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24083927..24084519) /note="source:CACAO_M_S_E5474_F222_scaffold_1 1522 2406" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24084532..24084812 /note="source:CACAO_M_E70014_F74_scaffold_10 8029 9363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24084813..24085160) /note="source:CACAO_M_E49205_F4_scaffold_6 2148 3293" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24085161..24085941) /note="source:CACAO_M_S_E52027_F3_scaffold_5 4425 5201" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24087986..24089666 /locus_tag="TCM_029734" /note="dbxref CacaoGD:Thecc1EG029734" mRNA join(24087986..24088724,24088845..24089666) /locus_tag="TCM_029734" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s05760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038856t1" /inference="similar to AA sequence:Phytozome:Glyma15g08780.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03817t00001" CDS join(24088194..24088724,24088845..24089465) /locus_tag="TCM_029734" /note="paralog of Thecc1EG038856t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY28053.1" /db_xref="Phytozome:Glyma15g08780.1" /db_xref="TAIR:AT4G18550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N341" /translation="MDNSIATRWRDLSGEKNWKDLLHPVDPDLRRYVIHYGERAGAAG DLFNDTMASRGFGYCLYPPDEFFSRAGLENGNPFMYEVTNFFYGAADSNDSNWFGYVA VATDEGKTALGRRDILVSWRGTGTEPEWIDDARFFTTPAKELFGTDHAKVHSGFLAIY TGKVSNSPYNQTSARDQVLKAVRKLVDKYQNEDISITVVGHSLGAALATLNATDIAAK GYNKPTDNSNKTCMVTAFAYASPHVGNQEFKEVIDGLIELHILRITNSTDIIPKLPVL LGYTDVGENLAIDTTKSSYLRQGINAHNLEVHLHGVAGVQESGEFKLEVDRDIALINK KIDGLQNKYKIPPEWWNHEKFKNMVQMYTGRWQFVDCAYVPDPPNDYLQ" gene 24090856..24092742 /locus_tag="TCM_029735" /note="dbxref CacaoGD:Thecc1EG029735" mRNA join(24090856..24091454,24091554..24092742) /locus_tag="TCM_029735" /product="Alpha/beta-Hydrolases superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021188001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029727t1" /inference="similar to AA sequence:Phytozome:Glyma15g08780.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc639t1" CDS join(24090870..24091454,24091554..24092189) /locus_tag="TCM_029735" /note="paralog of Thecc1EG029727t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein, putative" /protein_id="EOY28054.1" /db_xref="Phytozome:Glyma15g08780.1" /db_xref="TAIR:AT4G18550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49523" /translation="MDFFGKKKKLMGSIAQRWRELSGENNWEGLLDPLDKDLRKYIIH YGERTQAVMDAFNGEKASKWVGFSRYSTEDFFSKVGLEMGNPYKYKVTKFFYARSEIQ ILDWFAAVESNWIGYVAVTTDEGKAVLGRRDILICWRGTMRNLEVINDIKADLVSAAD ILGDNGDPKVHHGWHSIYTAKDSKSVYNQASAREQVLSEVRRLVDLYQDEEISITLTG HSLGGAVATLNAVDIIANGYNKSTTKPDKEYLVTAFVFASPRVGDSGFKKVFSGLKNL HVLRIKNELDMVPSLPIPLPLLHYTHVGEKLLIDSHKSPYMKSHLDISENLVIAHQLE PYLHGVAGSQGAKGEFKLEVNRDIALLNKSLDALKDEYKVPVEWWIEKNKGMAQQDDG SWILDDHEPEPAIV" gene 24098491..24100987 /locus_tag="TCM_029736" /note="dbxref CacaoGD:Thecc1EG029736" mRNA 24098491..24100987 /locus_tag="TCM_029736" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05370.1" /inference="similar to AA sequence:ricco:29900.m001593" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc4045t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc3289t1" CDS 24098758..24100413 /locus_tag="TCM_029736" /note="dbxref ricco:29900.m001593" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28055.1" /db_xref="TAIR:AT4G18540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HM81" /translation="MQSPVRFSSCRGVAFEIKPHADPFATATPAQNETRSSSKKSWFP WYQGSSSRVFPSSIQRSASRASSHFCDLDLDEDEDENNEADFVLERLEEGKDEEKEEK PTFPFASKREQTPKPARKQESRLSVILLDQGLLTVYKRLFVVCLTVNIIGLVLAATGH FPYARNRAALFSIANILVLTLCRSEAFLRVVFWLAVKVLGRSWVPLPIKTATTSLLQS LGGIHSSCGISSVAWLIYALVLTLKDRESTSPEIIGVASTILSLLCLSCLAAFPLVRH LHHNVFERIHRFAGWTALGLLWAFIILTISYDPITKSYSKELGSRLIKRQEFWFTVAI TILIIIPWLTVRRLPVKVSAPSGHASIIKFEGGIKAGILGRISPSPFSEWHAFGIISD GKTEHMMLAGAVGDFTKSLVSNPPSHLWVRQVHFAGLPYLVNMYDRVLLVATGSGICV FLSFLLQPCSANVCVLWVAKGIEQNFGKEIKEMMSGHPKEKVIVHDTAVLGRPNVSQM SVDAAKRWGAEVVIVTSNPEGSRDVVNACKGAGIPAFGPIWDS" gene complement(24100992..24103396) /locus_tag="TCM_029737" /note="dbxref CacaoGD:Thecc1EG029737" mRNA complement(join(24100992..24101601,24101890..24102163, 24102356..24102504,24102629..24102850,24102955..24103396)) /locus_tag="TCM_029737" /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030905t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05360.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6934t2" CDS complement(join(24101378..24101601,24101890..24102163, 24102356..24102504,24102629..24102850,24102955..24103195)) /locus_tag="TCM_029737" /note="paralog of Thecc1EG030905t1" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /protein_id="EOY28056.1" /db_xref="Phytozome:POPTR_0004s05360.1" /db_xref="TAIR:AT5G45910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2K5" /translation="MNKKIFLLIILFQIFGLVLSSSLQKYESIFNFGDSLSDTGNFLL SGALAFPVIGRLPYGETFFQHATGRCSDGRLIIDFIAEAFSLPYLPPYLAVTEGQSSE HGVNFAFAGATALDAEFFYERNIGSILWTNNSLNVQLGWFRKLKSTLCSNKQACDDFF GKSLFLVGEIGGNDYNYAFFLGGGIKQLQATVPLVVGVITNATSALIEEGAVELMVPG NLPIGCSAVYLTLFQSPNKADYDRHGCLKEFNAFARYHNDQLKQALTMLRQKYPHVRI IYADYYGAAMRFVHTPLHHGFYGGILRACCGGGGPYNFNNSARCGHTGSEVCQNPSLY SQWDGIHLTEAAYRYIALALINGSSSTPPLIPSAL" mobile_element complement(24105983..24106051) /note="source:CACAO_on_S_E46_scaffold_2 1309 1379" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(24106599..24106786) /note="source:scaffold_1_CACTA_0016 1584 1765" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24106638..24106788) /note="source:CACAO_on_S_E46_scaffold_2 541 674" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(24108261..24108340) /note="source:scaffold_1_CACTA_0016 1415 1494" /mobile_element_type="transposon:TIR/CACTA" gene 24108367..24110440 /locus_tag="TCM_029738" /note="dbxref CacaoGD:Thecc1EG029738" mRNA join(24108367..24108594,24108680..24108785, 24108892..24109067,24109338..24109486,24109688..24109964, 24110065..24110440) /locus_tag="TCM_029738" /product="GDSL-like Lipase/Acylhydrolase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g08930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030911t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400007777" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6928t2" CDS join(24108513..24108594,24108680..24108785, 24108892..24109067,24109338..24109486,24109688..24109964, 24110065..24110306) /locus_tag="TCM_029738" /note="paralog of Thecc1EG030911t1" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein, putative" /protein_id="EOY28057.1" /db_xref="Phytozome:PGSC0003DMP400007777" /db_xref="TAIR:AT1G28590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7KCY3" /translation="MASSPSLCLSKQQLLSILLIITILILTSNKPPAAFPPYGETFFK QPTGRFSDGRLVIDFFGNIISDFHWYHHKFGAGNGRNHKFLKGVNFAVAGATALDNAF LAQKGIINPATNVSLGVQVECNELLENSLILMGEIGGNDFNFAFFQGITTEVIQGLVP DVINAISSAIQELMKLGAVTILVPGNLPIGCLPIYLTRFQTSNKQDYGRSTGCLTWLN DFSQYYNGMLKNELNKIRKLHPFANIVYADYYQAAIPFYRSPRQFGFNSTLTACCGGG GPYNFNLSLGCGSPGTTSCGDPSSYVSWDGIHLTEATYGLISKALLDGSSTIPRLKIL CASSSAASD" gene complement(24110775..24114556) /locus_tag="TCM_029739" /note="dbxref CacaoGD:Thecc1EG029739" mRNA complement(join(24110775..24111464,24112300..24112417, 24112878..24112999,24113139..24113200,24113349..24113517, 24113596..24113769,24113936..24114556)) /locus_tag="TCM_029739" /product="Malate dehydrogenase" /inference="alignment:exonerate- protein:2:ricco:29900.m001590" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031715t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05340.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16629t1" CDS complement(join(24111324..24111464,24112300..24112417, 24112878..24112999,24113139..24113200,24113349..24113517, 24113596..24113769,24113936..24114217)) /locus_tag="TCM_029739" /note="paralog of Thecc1EG031715t1" /codon_start=1 /product="Malate dehydrogenase" /protein_id="EOY28058.1" /db_xref="Phytozome:POPTR_0004s05340.1" /db_xref="TAIR:AT1G53240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94JA2" /translation="MKITMLGSAVAALKKAAAASPSTCASTHLLSRSYYSAGSYPERK VAILGAAGGIGQPLALLMKLNPFVSSLSLYDIANTPGVAADVSHINYPAQVAGYVGEE ELGKALEGSDLVIIPAGVPRKPGMTRDDLFNINAGIVKSLCVAIAKYCPNALVNMISN PVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKAKVPVADVDVPVIGGH AGITILPLFSQATPKANLPDDDIEALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVF ADACIKGLNGVPDIVECSFVQSSVTELPFFASQVKLGKNGVEKVYGLGLLSEFEKQGL EKLKPELKASIEKGIKFANQN" gene complement(24115028..24119912) /locus_tag="TCM_029740" /note="dbxref CacaoGD:Thecc1EG029740" mRNA complement(join(24115028..24115784,24116119..24116307, 24116677..24116794,24116896..24116984,24117396..24117957, 24118724..24118887,24119064..24119912)) /locus_tag="TCM_029740" /product="Pyruvate decarboxylase-2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29900.m001589" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021649t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07630.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04856t00001" mRNA complement(join(24115045..24115784,24116119..24116260, 24117395..24117957,24118724..24118887,24119064..24119836)) /locus_tag="TCM_029740" /product="Thiamine pyrophosphate dependent pyruvate decarboxylase family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29900.m001589" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021649t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07630.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc91t10; inference alignment:Newbler:10:TSA:cgbaB_g04856t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc88t4" mRNA complement(join(24115299..24115784,24116119..24116307, 24116677..24116794,24116896..24116987,24117396..24117957, 24118724..24118887,24119064..24119630)) /locus_tag="TCM_029740" /product="Pyruvate decarboxylase-2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29900.m001589" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021649t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07630.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7039t1; inference alignment:Newbler:10:TSA:cgbaB_g04856t00001" CDS complement(join(24115614..24115784,24116119..24116307, 24116677..24116794,24116896..24116984,24117396..24117957, 24118724..24118887,24119064..24119540)) /locus_tag="TCM_029740" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021649t1" /codon_start=1 /product="Pyruvate decarboxylase-2 isoform 1" /protein_id="EOY28059.1" /db_xref="Phytozome:POPTR_0011s07630.1" /db_xref="TAIR:AT5G54960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10MW3" /translation="MEAGNKIRSSAHPNSLAPPVCGGASRGTLGRYLARRLVEIGVKD VFSVPGDFNLTLLDHLIAEPELNLIGCCNELNAGYAADGYARSKGVGACVVTFTVGGL SALNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTITCAQA VVNNLDDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFAREPVPFLLAPKVSNQ LGLEAAVEATADFLNKAVKPVLVGGPKLRVAKAQEAFVELADASGYPIAVMPSAKGLV PEHHPHFIGTYWGAVSTSFCGEIVESADAYVFVGPIFNDYSSVGYSLLFTKEKAVIVQ PNRVTIGNGPSFGWVFMTDFLSALAKKLKRNSTAVENYRRIFIPPGMPLKRGNDEPLR VNVLFKHIQDMLSGESAVIAETGDSWFNCQKLQLPENCGYEFQMQYGSIGWSVGATLG YAQAAKDKRVIACIGDGSFQVTAQDISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN VIKNWNYSGLVDAIHNGDGKCWTAKVRTEEELKEAISTATGAKRDSLCFIEVFAHKDD TSKELLEWGSRVSSANSRPPNPQ" CDS complement(join(24115614..24115784,24116119..24116307, 24116677..24116794,24116896..24116987,24117396..24117957, 24118724..24118887,24119064..24119540)) /locus_tag="TCM_029740" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021649t1" /codon_start=1 /product="Pyruvate decarboxylase-2 isoform 2" /protein_id="EOY28060.1" /db_xref="Phytozome:POPTR_0011s07630.1" /db_xref="TAIR:AT5G54960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10MW3" /translation="MEAGNKIRSSAHPNSLAPPVCGGASRGTLGRYLARRLVEIGVKD VFSVPGDFNLTLLDHLIAEPELNLIGCCNELNAGYAADGYARSKGVGACVVTFTVGGL SALNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTITCAQA VVNNLDDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFAREPVPFLLAPKVSNQ LGLEAAVEATADFLNKAVKPVLVGGPKLRVAKAQEAFVELADASGYPIAVMPSAKGLV PEHHPHFIGTYWGAVSTSFCGEIVESADAYVFVGPIFNDYSSVGYSLLFTKEKAVIVQ PNRVTIGNGPSFGWVFMTDFLSALAKKLKRNSTAVENYRRIFIPPGMPLKRGNDEPLR VNVLFKHIQQDMLSGESAVIAETGDSWFNCQKLQLPENCGYEFQMQYGSIGWSVGATL GYAQAAKDKRVIACIGDGSFQVTAQDISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY NVIKNWNYSGLVDAIHNGDGKCWTAKVRTEEELKEAISTATGAKRDSLCFIEVFAHKD DTSKELLEWGSRVSSANSRPPNPQ" CDS complement(join(24115763..24115784,24116119..24116260, 24117395..24117957,24118724..24118887,24119064..24119540)) /locus_tag="TCM_029740" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG021649t1" /codon_start=1 /product="Thiamine pyrophosphate dependent pyruvate decarboxylase family protein isoform 4" /protein_id="EOY28062.1" /db_xref="Phytozome:POPTR_0011s07630.1" /db_xref="TAIR:AT5G54960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10MW3" /translation="MEAGNKIRSSAHPNSLAPPVCGGASRGTLGRYLARRLVEIGVKD VFSVPGDFNLTLLDHLIAEPELNLIGCCNELNAGYAADGYARSKGVGACVVTFTVGGL SALNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTITCAQA VVNNLDDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFAREPVPFLLAPKVSNQ LGLEAAVEATADFLNKAVKPVLVGGPKLRVAKAQEAFVELADASGYPIAVMPSAKGLV PEHHPHFIGTYWGAVSTSFCGEIVESADAYVFVGPIFNDYSSVGYSLLFTKEKAVIVQ PNRVTIGNGPSFGWVFMTDFLSALAKKLKRNSTAVENYRRIFIPPGMPLKRGNDEPLR VNVLFKHIQALYFLSIMEAIRLKLRFMMALTMLLRTGITVALLMPSTMVMANAGQPRC GQRKN" mRNA complement(join(24116246..24116307,24116677..24116991, 24117395..24117957,24118724..24118887,24119064..24119836)) /locus_tag="TCM_029740" /product="Thiamine pyrophosphate dependent pyruvate decarboxylase family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29900.m001589" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021649t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07630.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc91t6; inference alignment:Newbler:10:TSA:cgbaB_g04856t00001" CDS complement(join(24116975..24116991,24117395..24117957, 24118724..24118887,24119064..24119540)) /locus_tag="TCM_029740" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021649t1" /codon_start=1 /product="Thiamine pyrophosphate dependent pyruvate decarboxylase family protein isoform 3" /protein_id="EOY28061.1" /db_xref="Phytozome:POPTR_0011s07630.1" /db_xref="TAIR:AT5G54960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10MW3" /translation="MEAGNKIRSSAHPNSLAPPVCGGASRGTLGRYLARRLVEIGVKD VFSVPGDFNLTLLDHLIAEPELNLIGCCNELNAGYAADGYARSKGVGACVVTFTVGGL SALNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTITCAQA VVNNLDDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFAREPVPFLLAPKVSNQ LGLEAAVEATADFLNKAVKPVLVGGPKLRVAKAQEAFVELADASGYPIAVMPSAKGLV PEHHPHFIGTYWGAVSTSFCGEIVESADAYVFVGPIFNDYSSVGYSLLFTKEKAVIVQ PNRVTIGNGPSFGWVFMTDFLSALAKKLKRNSTAVENYRRIFIPPGMPLKRGNDEPLR VNVLFKHIQVNRIC" gene complement(24121292..24125231) /locus_tag="TCM_029742" /note="dbxref CacaoGD:Thecc1EG029742" mRNA complement(join(24121292..24121454,24121597..24121964, 24123153..24125231)) /locus_tag="TCM_029742" /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05320.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05320.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage" CDS complement(24123214..24124812) /locus_tag="TCM_029742" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /protein_id="EOY28063.1" /db_xref="Phytozome:POPTR_0004s05320.1" /db_xref="TAIR:AT1G28690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PFQ9" /translation="MKNGRLPTIGPSIFSSANNQNFRVAPKNSFAPNHHNFLSNPTTT TLSAALQHFINSDTPFHGQKIHTHIIKSGFSPNTNVSIKLLILHSKSGCLKYASQMFD ELPQQTLSAYNYLIGGYLKHGRVEESLGLVRRMVYAGEKPDGFTFSMILKASACGSNR VVLPRLLGRMAHAQMVKLDVEPDEVLYTALVDSYVKNGKVGCARTIFDMMLEKNVICS TALITGYMNNGLIEEAEDVFSKTIEKDVVVFNAMIESYSKSVETAKKGLEVFVDMQRL NFRPNISTFASVIGACSVLSALEIGQQVQGQLMKTEYFMHIKIGSALVDMHAKCGKIV DARRVFDYMPEKNVFTWTSMIDGYGKNGNPNEALELFHAMQECCVEPNYVTFLSALSA CGHAGLLAKGREIFESMERDYSMKPKMEHYACMVDLLGRAGNLDQAWELVTRMPEKPN SDVWAALLSSCRLHGDVQMASIAADELFKLNADSRPGAFVGLSNAWAAAGKWDGVSEL REMMKVRGILKETACSWVGTDGGY" mobile_element 24127924..24128057 /note="source:CACAO_PIF_E119_scaffold_3 4499 4647" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 24129301..24132535 /locus_tag="TCM_029743" /note="dbxref CacaoGD:Thecc1EG029743" mRNA join(24129301..24129586,24129741..24129781, 24129899..24129971,24131436..24131503,24131652..24131815, 24132247..24132535) /locus_tag="TCM_029743" /product="SGNH hydrolase-type esterase superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029744t2" /inference="similar to AA sequence:Phytozome:POPTR_0011s07660.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7008t2" gene 24129425..24137329 /locus_tag="TCM_029744" /note="dbxref CacaoGD:Thecc1EG029744" mRNA join(24129425..24129586,24134277..24134516, 24136185..24136252,24136401..24136565,24136997..24137321) /locus_tag="TCM_029744" /product="SGNH hydrolase-type esterase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021182001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012084t2" /inference="similar to AA sequence:Phytozome:POPTR_0011s07660.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06235t00001; alternateUTRof:Thecc1EG029744t1; inference alignment:Newbler:10:TSA:cgbaP1_g06235t00001; inference alignment:Newbler:10:TSA:cgbaP2_g10871t00001" CDS join(24129488..24129586,24134277..24134516, 24136185..24136252,24136401..24136565,24136997..24137156) /locus_tag="TCM_029744" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG012084t2" /codon_start=1 /product="SGNH hydrolase-type esterase superfamily protein isoform 1" /protein_id="EOY28066.1" /db_xref="Phytozome:POPTR_0011s07660.1" /db_xref="TAIR:AT5G45920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2L0" /translation="MRPKIYLFGDSITEESFRDGGWGASLANLFSRTVDVVLRGYSGY NSRWALKVLDRVFPAAESGGSDGASPPPLAVTVFFGANDACLPDRYAAFQHVPVDEYQ QNLHSIVSSLKKRWPKTLILLITPPPIDEDERLRHPYAENPSGLPERTNEAAGAFAKA CVETAGQCGIPVVDIWTRMQQYPDWRKAYLRDGLHLTQDGNKVVFEEVVKKLNVGGLS LEKLTVDLPLLANIDHGDPLKAFQW" CDS join(24129488..24129586,24129741..24129781, 24129899..24129971,24131436..24131503,24131652..24131763) /locus_tag="TCM_029743" /note="paralog of Thecc1EG029744t2" /codon_start=1 /product="SGNH hydrolase-type esterase superfamily protein" /protein_id="EOY28064.1" /db_xref="Phytozome:POPTR_0011s07660.1" /db_xref="TAIR:AT5G45920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2L0" /translation="MRPKIYLFGDSITEESFRDGGWGASLANLFSRTVDVVLRGYSGY NSRYAAFQQVPVDEYKQNLHSIVSSLKKRWPKALILLITPPPIDEDERLRHPYAENPS GLPERTNEAACAFAKAVLKLLGNVESLW" mRNA join(24133887..24134122,24134277..24134516, 24136185..24136252,24136401..24136565,24136997..24137329) /locus_tag="TCM_029744" /product="SGNH hydrolase-type esterase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021182001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012084t2" /inference="similar to AA sequence:Phytozome:POPTR_0011s07660.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10871t00001; inference alignment:Newbler:10:TSA:cgbaP2_g10871t00001" CDS join(24134024..24134122,24134277..24134516, 24136185..24136252,24136401..24136565,24136997..24137156) /locus_tag="TCM_029744" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG012084t2" /codon_start=1 /product="SGNH hydrolase-type esterase superfamily protein isoform 1" /protein_id="EOY28065.1" /db_xref="Phytozome:POPTR_0011s07660.1" /db_xref="TAIR:AT5G45920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2L0" /translation="MRPKIYLFGDSITEESFRDGGWGASLANLFSRTVDVVLRGYSGY NSRWALKVLDRVFPAAESGGSDGASPPPLAVTVFFGANDACLPDRYAAFQHVPVDEYQ QNLHSIVSSLKKRWPKTLILLITPPPIDEDERLRHPYAENPSGLPERTNEAAGAFAKA CVETAGQCGIPVVDIWTRMQQYPDWRKAYLRDGLHLTQDGNKVVFEEVVKKLNVGGLS LEKLTVDLPLLANIDHGDPLKAFQW" gene complement(24142033..24143096) /locus_tag="TCM_029745" /note="dbxref CacaoGD:Thecc1EG029745" mRNA complement(24142033..24143096) /locus_tag="TCM_029745" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s07670.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043337t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.54 coverage" CDS complement(24142668..24143027) /locus_tag="TCM_029745" /note="paralog of Thecc1EG043337t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28067.1" /translation="MNFPLYMRTGLDRKTALAIAIHSIWLQLITYTGSGTFSLEMPNS TIMQTSLVILLILSANAVDIEAKSHAGRKTMQKRIDSQSIIHALAGYDLSATKQGRRV MTDTSRISPGGPDPQHN" gene complement(24145500..24146646) /locus_tag="TCM_029746" /note="dbxref CacaoGD:Thecc1EG029746" mRNA complement(join(24145500..24145891,24146553..24146646)) /locus_tag="TCM_029746" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS complement(join(24145731..24145891,24146553..24146622)) /locus_tag="TCM_029746" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28068.1" /translation="MTAVSLQGGDVDLTLHWNQPERKGSQSRPLIEKRNLNKSIEDLR QYLNGEAKKNQNGQVERTSPGGPDPQHHFKNY" mobile_element 24148540..24149052 /note="source:INTACT1604F_F75_scaffold_10-int 3296 3810" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24149071..24150590 /note="source:INTACT1604F_F75_scaffold_10-int 3909 5572" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24151301..24152474) /note="source:CACAO_on_E683_scaffold_9 1307 2299" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 24152148..24152591 /note="source:INTACT639F_F363_scaffold_5-int 8132 8572" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(24152474..24154626) /locus_tag="TCM_029747" /note="dbxref CacaoGD:Thecc1EG029747" mRNA complement(join(24152474..24153309,24154449..24154626)) /locus_tag="TCM_029747" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(24152879..24153118) /locus_tag="TCM_029747" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28069.1" /translation="MISFKPLIHHSQGRARRWLSSTWKSDSTRIQEKTSPSIRDFISR EKKEYNFFIKKNYKQLNLNPLVPANQRLFVIRQCF" mobile_element complement(24155165..24155252) /note="source:scaffold_7_CACTA_0776 5861 5954" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24156185..24157293) /note="source:CACAO_on_E683_scaffold_9 1200 2300" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(24160534..24161473) /locus_tag="TCM_029748" /note="dbxref CacaoGD:Thecc1EG029748" mRNA complement(24160534..24161473) /locus_tag="TCM_029748" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.60 coverage" CDS complement(24161205..24161453) /locus_tag="TCM_029748" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28070.1" /translation="MASLRFCACLILIILHAVPRSESRVLNPYVEGKTTTSSFGALSI TTSSGKVHQFSVPLIDEYTKNLYASKRLSPGGPDPKHH" gene complement(24162607..24163063) /locus_tag="TCM_029749" /note="dbxref CacaoGD:Thecc1EG029749" mRNA complement(24162607..24163063) /locus_tag="TCM_029749" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.73 coverage" CDS complement(24162773..24163021) /locus_tag="TCM_029749" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28071.1" /translation="MGSWRFLACLLLILYLVSRFECRLLNPNIEGRSPTRSFRMLSLA TSSGTVYQFKLEVRDEDNNENPDESKRISPGGPDPKHH" gene complement(24163429..24164562) /locus_tag="TCM_029750" /note="dbxref CacaoGD:Thecc1EG029750" mRNA complement(24163429..24164562) /locus_tag="TCM_029750" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.24 coverage" CDS complement(24164318..24164557) /locus_tag="TCM_029750" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28072.1" /translation="MRVLQKSLRRSEMSAFSPLSCIVPKQIHYASHQCSWASHIVELA SPIPARLRNKRKTDDLRSPLHCYKENIQFQSHTKF" gene complement(24164933..24165752) /locus_tag="TCM_029751" /note="dbxref CacaoGD:Thecc1EG029751" mRNA complement(24164933..24165752) /locus_tag="TCM_029751" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s07690.1" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g14688t00001" CDS complement(24164951..24165424) /locus_tag="TCM_029751" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28073.1" /translation="MTTRRTSLLSLQNSPHQFSKNLHPRPIKKEEKGSPLKTLPISFF QKSILLWLNPIQRISFLPKLWFTNPNAERGELKMGSNRFATRHVWRMKVKISDSSYIQ PTMHLGDSFVNDSICLIEVLFLFFLLLVFLHFKLYIYTQVSCYDMSQNKICPYIR" gene complement(24165803..24171456) /locus_tag="TCM_029752" /note="dbxref CacaoGD:Thecc1EG029752" mRNA complement(join(24165803..24166932,24167167..24167325, 24167771..24167942,24168042..24168218,24168792..24168914, 24169064..24169201,24169275..24169469,24169762..24170559, 24170694..24170882,24171211..24171456)) /locus_tag="TCM_029752" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s07710.1" /inference="similar to AA sequence:ricco:29900.m001579" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" mobile_element 24166596..24166638 /note="source:scaffold_5_CACTA_0580 13321 13361" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(24166756..24166932,24167167..24167325, 24167771..24167942,24168042..24168218,24168792..24168914, 24169064..24169201,24169275..24169469,24169762..24170559, 24170694..24170882,24171211..24171377)) /locus_tag="TCM_029752" /note="dbxref ricco:29900.m001579" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28074.1" /db_xref="TAIR:AT4G18490.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S967" /translation="MNYVLRSYILLKTDEEIGKDFLSSWKSMSVTQDDAMDFSFETIS KGKKKAFNFDKLDMDFNLDGDFDKLSSFKMDMPDLDFSSPSKENAKAKGKSKEETTSE KQQGKKNHFTFSFDFNELDGFDFDPSLTKGEKTCKKSQDSKAVALESSEVSKIDQALE DDWITAKLPVTSDAANLKAETPKCGAEAPKSIDDPCPSQAVPIEGLAPGNMVAAEGAR ISPEKTVDTNAKETYKSSTLSDRAVSLELYDQQSLQSSPMDSLSGNNSNHEPVSNMHA EVCSQRRRINTSSAADQNVNDTMITKEGSKHENLHQKSTFPLSESDRDDRKGAGGNIP AEIVDSQSVLGDILLKDISTASLSREIVDNTGAMKDIQNPTPELPLVSSDRCIEPTAS EATARKDKEAGAIRSRFFGRSEETEFQLHQPSPTGKEVSSFSSKKIDDMHLSPAKEKR EDFDGSEEQNGRKLVGYSELSSQELTEGRPVLLQSENNVGSSSDIGDGVNADVVQNGG SKLVGKSSVQDKAATKGVTVLLRSEKNASLKANSFNYAEKTTESGLQKSVNLKPQVPK IESIQNPKLLSEAPNIAKKTPALSSFKCTRTIGPKKDQLNSQRETNSLRNFEKNMDTP RNKSKVVLPVGNAEKETPKLPSLKRKTYQVQNHKNHMEVSTKDIPCDHLTSGFEVPQE VNMTELENDGNVEKAEAYGRELEDICNMLKKKHEEAKELLVRAIVNNNSLLMLNHPIF EEKISFPFVFAIIRFSLLPCIAIK" gene 24173493..24175994 /locus_tag="TCM_029753" /note="dbxref CacaoGD:Thecc1EG029753" mRNA join(24173493..24174836,24175171..24175994) /locus_tag="TCM_029753" /product="HXXXD-type acyl-transferase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05280.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05280.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16632t1" CDS join(24174037..24174836,24175171..24175702) /locus_tag="TCM_029753" /codon_start=1 /product="HXXXD-type acyl-transferase family protein" /protein_id="EOY28075.1" /db_xref="Phytozome:POPTR_0004s05280.1" /db_xref="TAIR:AT1G28680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHQ0" /translation="MKVQVTETALIRPSTVPFADDHTLALSHLDNDHSLNVTFRYLRA YVNSTNTDRNPFQVISPAIATALHHYYPLAGSLRRASNGRYELLCQVDQSLPLVNASA DCTLESVNYLDDPDMNSVEQLVPDPSPEETLLNPCALQVTVFKCGGFTLGAAIHNALC DGLGATQFFCMAADLARGVDQIKFQPVWDRAALLGPRNPPRPEGPVREFLSLEKGFNP YKQDVGHVVRACFYVEDECLDQLKSLLFEQCGLGLTTFEILGAYIWRAKVKASKNPGD EIVKYSYLMNIRKIVKPPLPPGYWGNGCVAMYAKVSAKDLTEQPLWKTAELIKKSKSN ASDEYVRSFIDLQELHYEEGITAGKGVSGFTDWRHLGHSAVDFGWGGPVTVLPLSTNF LGSMEPCFFLPYSSSSTGKNKGFKVLVSLCETAMPAFKEEMEKFSRKEFDI" gene 24176288..24178624 /locus_tag="TCM_029754" /note="dbxref CacaoGD:Thecc1EG029754" mRNA join(24176288..24176557,24176708..24176823, 24177118..24178624) /locus_tag="TCM_029754" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g30560.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07720.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06556t00001" CDS join(24176455..24176557,24176708..24176823, 24177118..24178170) /locus_tag="TCM_029754" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY28076.1" /db_xref="Phytozome:POPTR_0011s07720.1" /db_xref="TAIR:AT4G18480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P16127" /translation="MASVLGTSSTAILASRSLVTPSSKPAIPSISIDPGQSYGRNFYG GFGVQGRKGRPPFHVAVTNVATGIDSVEKAQKLDAKESQRPVYPFAAIVGQDEMKLCL LLNVIDPKIGGVMIMGDRGTGKSTAVRSLVDLLPEIRVVFGDPYNSDPEDPESMGIEV REKVTKGEELTVMMAKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANR GILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRP QLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRDSYKAEQEKLQQQIASARS SLSSVQIDHDLKVKISKVCAELNVDGLRGDIVTNRAAKALAALKGRDKVTAEDIATVI PNCLRHRLRKDPLESIDSGLLVIEKFYEVFS" gene complement(24178629..24180777) /locus_tag="TCM_029755" /note="dbxref CacaoGD:Thecc1EG029755" mRNA complement(join(24178629..24179247,24179348..24179467, 24180067..24180209,24180318..24180633)) /locus_tag="TCM_029755" /product="Nudix hydrolase isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G45940.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029756t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021168001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09064t00001" mRNA complement(join(24178647..24179247,24179348..24179467, 24180067..24180203,24180318..24180777)) /locus_tag="TCM_029755" /product="Nudix hydrolase isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G45940.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029756t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021168001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1030t1; inference alignment:Newbler:10:TSA:cgbaL_g09064t00001" CDS complement(join(24179026..24179247,24179348..24179467, 24180067..24180203,24180318..24180600)) /locus_tag="TCM_029755" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029756t1" /codon_start=1 /product="Nudix hydrolase isoform 2" /protein_id="EOY28078.1" /db_xref="Phytozome:GSVIVT01021168001" /db_xref="TAIR:AT1G28960.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HM72" /translation="MGSCNNPGLGSDVLETLAQRLRHYKPPPRQIPETATESVSHQIN SDEKSVSSITDHYQPPKLKRAAVLVCIFQGNNDDLRVILTKRSSTLSSHSVALPGGKR EETDADDVETALREANEEIGLDPSLVNVVTVLEPIFTKSRMLVVPVVAILSDAKAFSP APSAAEVEAIFDAPLEMFLKDENRRAEEREWMGGKYLLQYFDYEAENKRYVIWALTAG ILIKVASIVYQRPPAFLELRPKFWDMAFSTDIPKQ" CDS complement(join(24179026..24179247,24179348..24179467, 24180067..24180209,24180318..24180600)) /locus_tag="TCM_029755" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029756t1" /codon_start=1 /product="Nudix hydrolase isoform 1" /protein_id="EOY28077.1" /db_xref="Phytozome:GSVIVT01021168001" /db_xref="TAIR:AT1G28960.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HM72" /translation="MGSCNNPGLGSDVLETLAQRLRHYKPPPRQIPETATESVSHQIN SDEKSVSSITDHYQPPKLKRAAVLVCIFQGNNDDLRVILTKRSSTLSSHSGEVALPGG KREETDADDVETALREANEEIGLDPSLVNVVTVLEPIFTKSRMLVVPVVAILSDAKAF SPAPSAAEVEAIFDAPLEMFLKDENRRAEEREWMGGKYLLQYFDYEAENKRYVIWALT AGILIKVASIVYQRPPAFLELRPKFWDMAFSTDIPKQ" gene complement(24180821..24183996) /locus_tag="TCM_029756" /note="dbxref CacaoGD:Thecc1EG029756" mRNA complement(join(24180821..24181319,24181398..24181517, 24182806..24182948,24183541..24183996)) /locus_tag="TCM_029756" /product="Nudix hydrolase" /inference="alignment:exonerate- protein:2:ricco:29900.m001576" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029755t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05240.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10042t00001" CDS complement(join(24181095..24181319,24181398..24181517, 24182806..24182948,24183541..24183913)) /locus_tag="TCM_029756" /note="paralog of Thecc1EG029755t1" /codon_start=1 /product="Nudix hydrolase" /protein_id="EOY28079.1" /db_xref="Phytozome:POPTR_0004s05240.1" /db_xref="TAIR:AT1G28960.5" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HM72" /translation="MIFSNLKRLPLLSPPFVKLMASSTSLNGGSLSNSSQRLLALAQQ LRHYRPPTCSLDDNEEQIMEEAAGKVVSQVGFQESVTPVAKNPEKFRPKRAAVLICLF EGDAGDLRVILTKRSSRLSTHSGEVSLPGGKAEEGDKDDGDTATREAKEEIGLDPSLV NVVTVLEPFLSKHLLRVVPVIGILNDKKAFKPTPNPAEVDAVFDAPLEMFVKDENRSV EEREWMGEKYLLHFFDYEIENKKYLIWGLTAGILIRAASVVYQRPPAFLEQSPKFKFP RVVDNNTVMR" mobile_element complement(24184052..24184062) /note="source:CACAO_Mariner_E220_scaffold_9 15116 15161" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(24184063..24184264) /note="source:scaffold_4_CACTA_0505 10762 10965" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24184265..24184345) /note="source:CACAO_Mariner_E220_scaffold_9 14738 15115" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(24185810..24191459) /locus_tag="TCM_029758" /note="dbxref CacaoGD:Thecc1EG029758" mRNA complement(join(24185810..24186525,24186608..24186721, 24188787..24189014,24189907..24190068,24190426..24190532, 24191101..24191355)) /locus_tag="TCM_029758" /product="IQ-domain 9, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031705t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07740.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01262t00003; alternateUTRof:Thecc1EG029758t1; inference alignment:Newbler:10:TSA:cgbaP2_g00772t00003" mRNA complement(join(24185810..24186525,24186608..24186721, 24188787..24189014,24189907..24190068,24190426..24190532, 24190922..24191085)) /locus_tag="TCM_029758" /product="IQ-domain 9, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031705t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07740.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01262t00001; alternateUTRof:Thecc1EG029758t1; inference alignment:Newbler:10:TSA:cgbaP2_g00772t00003" mRNA complement(join(24185818..24186525,24186608..24186721, 24188787..24189014,24189907..24190068,24190426..24190510, 24191101..24191459)) /locus_tag="TCM_029758" /product="IQ-domain 9, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031705t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07740.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6996t1; alternateUTRof:Thecc1EG029758t1; inference alignment:Newbler:10:TSA:cgbaP2_g00772t00003" mRNA complement(join(24185818..24186525,24186608..24186721, 24188787..24189014,24189907..24190068,24190426..24190532, 24191072..24191205)) /locus_tag="TCM_029758" /product="IQ-domain 9, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031705t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07740.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00772t00003; inference alignment:Newbler:10:TSA:cgbaP2_g00772t00003" mRNA complement(join(24185827..24186525,24186608..24186721, 24188787..24189014,24189907..24190068,24190426..24190532, 24191072..24191288)) /locus_tag="TCM_029758" /product="IQ-domain 9, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031705t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07740.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02294t00001; alternateUTRof:Thecc1EG029758t1; inference alignment:Newbler:10:TSA:cgbaP2_g00772t00003" CDS complement(join(24186160..24186525,24186608..24186721, 24188787..24189014,24189907..24190068,24190426..24190494)) /locus_tag="TCM_029758" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG031705t1" /codon_start=1 /product="IQ-domain 9, putative isoform 1" /protein_id="EOY28080.1" /db_xref="Phytozome:POPTR_0011s07740.1" /db_xref="TAIR:AT2G33990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2L7" /translation="MGSGNLLKTIIKKVKNDSPKQVKGSSASTKSNGFKWKKHQRKSS TKTSFTSGNANTLGMPIEDLAAIRIQTAFRAYRARKSLRRLKGTVRLQAKTQTYSIEK QATTTLNYLHSWSNIQAQIRARRLCMVTEGHLRQKKIANQLKLEAKLHDLEVEWSGGP ETMETILTKIHQREEAAVKRERTMAYAFSHQWRAPNSKNNGLGNYELAKANWGWSWVE RWIAVRPWESRLSIQSITPKKVQNTQISKSKAGKNSNSPKPKASASVKPPSFPNGKGA LKPRRLSYPGAEKPTTRRESSKAEEVNNKKEETVTW" CDS complement(join(24186160..24186525,24186608..24186721, 24188787..24189014,24189907..24190068,24190426..24190494)) /locus_tag="TCM_029758" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG031705t1" /codon_start=1 /product="IQ-domain 9, putative isoform 1" /protein_id="EOY28081.1" /db_xref="Phytozome:POPTR_0011s07740.1" /db_xref="TAIR:AT2G33990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2L7" /translation="MGSGNLLKTIIKKVKNDSPKQVKGSSASTKSNGFKWKKHQRKSS TKTSFTSGNANTLGMPIEDLAAIRIQTAFRAYRARKSLRRLKGTVRLQAKTQTYSIEK QATTTLNYLHSWSNIQAQIRARRLCMVTEGHLRQKKIANQLKLEAKLHDLEVEWSGGP ETMETILTKIHQREEAAVKRERTMAYAFSHQWRAPNSKNNGLGNYELAKANWGWSWVE RWIAVRPWESRLSIQSITPKKVQNTQISKSKAGKNSNSPKPKASASVKPPSFPNGKGA LKPRRLSYPGAEKPTTRRESSKAEEVNNKKEETVTW" CDS complement(join(24186160..24186525,24186608..24186721, 24188787..24189014,24189907..24190068,24190426..24190494)) /locus_tag="TCM_029758" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG031705t1" /codon_start=1 /product="IQ-domain 9, putative isoform 1" /protein_id="EOY28082.1" /db_xref="Phytozome:POPTR_0011s07740.1" /db_xref="TAIR:AT2G33990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2L7" /translation="MGSGNLLKTIIKKVKNDSPKQVKGSSASTKSNGFKWKKHQRKSS TKTSFTSGNANTLGMPIEDLAAIRIQTAFRAYRARKSLRRLKGTVRLQAKTQTYSIEK QATTTLNYLHSWSNIQAQIRARRLCMVTEGHLRQKKIANQLKLEAKLHDLEVEWSGGP ETMETILTKIHQREEAAVKRERTMAYAFSHQWRAPNSKNNGLGNYELAKANWGWSWVE RWIAVRPWESRLSIQSITPKKVQNTQISKSKAGKNSNSPKPKASASVKPPSFPNGKGA LKPRRLSYPGAEKPTTRRESSKAEEVNNKKEETVTW" CDS complement(join(24186160..24186525,24186608..24186721, 24188787..24189014,24189907..24190068,24190426..24190494)) /locus_tag="TCM_029758" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG031705t1" /codon_start=1 /product="IQ-domain 9, putative isoform 1" /protein_id="EOY28083.1" /db_xref="Phytozome:POPTR_0011s07740.1" /db_xref="TAIR:AT2G33990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2L7" /translation="MGSGNLLKTIIKKVKNDSPKQVKGSSASTKSNGFKWKKHQRKSS TKTSFTSGNANTLGMPIEDLAAIRIQTAFRAYRARKSLRRLKGTVRLQAKTQTYSIEK QATTTLNYLHSWSNIQAQIRARRLCMVTEGHLRQKKIANQLKLEAKLHDLEVEWSGGP ETMETILTKIHQREEAAVKRERTMAYAFSHQWRAPNSKNNGLGNYELAKANWGWSWVE RWIAVRPWESRLSIQSITPKKVQNTQISKSKAGKNSNSPKPKASASVKPPSFPNGKGA LKPRRLSYPGAEKPTTRRESSKAEEVNNKKEETVTW" CDS complement(join(24186160..24186525,24186608..24186721, 24188787..24189014,24189907..24190068,24190426..24190494)) /locus_tag="TCM_029758" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG031705t1" /codon_start=1 /product="IQ-domain 9, putative isoform 1" /protein_id="EOY28084.1" /db_xref="Phytozome:POPTR_0011s07740.1" /db_xref="TAIR:AT2G33990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2L7" /translation="MGSGNLLKTIIKKVKNDSPKQVKGSSASTKSNGFKWKKHQRKSS TKTSFTSGNANTLGMPIEDLAAIRIQTAFRAYRARKSLRRLKGTVRLQAKTQTYSIEK QATTTLNYLHSWSNIQAQIRARRLCMVTEGHLRQKKIANQLKLEAKLHDLEVEWSGGP ETMETILTKIHQREEAAVKRERTMAYAFSHQWRAPNSKNNGLGNYELAKANWGWSWVE RWIAVRPWESRLSIQSITPKKVQNTQISKSKAGKNSNSPKPKASASVKPPSFPNGKGA LKPRRLSYPGAEKPTTRRESSKAEEVNNKKEETVTW" mobile_element 24186725..24186788 /note="source:CACAO_M_E34540_F17_scaffold_5 1237 1325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24187083..24187133) /note="source:CACAO_M_E49279_F74_scaffold_6 1886 1937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24187576..24188113 /note="source:CACAO_M_E4753_F17_scaffold_2 7269 7825" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24192756..24193857 /locus_tag="TCM_029759" /note="dbxref CacaoGD:Thecc1EG029759" mRNA 24192756..24193857 /locus_tag="TCM_029759" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29900.m001574" /inference="similar to AA sequence:ricco:29900.m001574" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6971t1" CDS 24192871..24193584 /locus_tag="TCM_029759" /note="dbxref ricco:29900.m001574" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY28085.1" /db_xref="TAIR:AT2G42360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I1P6" /translation="MGREDDDEGRKFAVSRKIMLAAIASLLGVVMLIILLHIYARYLL RRQERRRRAALIYSQRTQVTPIDEISANNEPPKSSGLDPLVIASLPTFTYKLTASSQI DDHDEPTECSVCLGTITDESTVRLLPNCKHMFHVECIDTWLGSHTTCPICRTVAEPTV QPEDMESGTRVQPTAPPVEENAFHGAAQVEKEGEPSSSSSSGSRFGSFRRMLGRDRSS SRITHSCGDEVGTQDLERQ" gene 24199021..24201908 /locus_tag="TCM_029760" /note="dbxref CacaoGD:Thecc1EG029760" mRNA join(24199021..24199334,24199515..24200195, 24200294..24200434,24200923..24201092,24201186..24201366, 24201510..24201908) /locus_tag="TCM_029760" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29900.m001573" /inference="similar to AA sequence:ricco:29900.m001573" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1187t2" CDS join(24199539..24200195,24200294..24200434, 24200923..24201092,24201186..24201366,24201510..24201701) /locus_tag="TCM_029760" /note="dbxref ricco:29900.m001573" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28086.1" /translation="MCSNSVGGRAVASASGVGDRHDFASSSIRKAKKQRIPKRGPGVA ELEKILREQEQKDGAGQIIGGISSSLLPSLPNTYPPPHSSFVSSSNPLPRNVTFLPDH NHLGNAPGTPSLPPVAALSGNINGNGYDNLEGSLQIGGGSVGGNGRSKGVYIGGSGVY LPEQTLLPITWGSTETRKGEEAPKMDADFSFPILVSKGSDRHNPPRMLQKTHSPCHPS MVNFFPRSAASSPSTPPSSSAGVYHHVEPPSNQKSCLNYTCILPEEDKVIGVKRPRPN FPVDKWLPAPPSLPYQLPHSHPHIPRLGPSMSSSNNHGVFNLETASRDPMPTSPLELE KVKSCVNDQGNPSGNGSAPITLGSPTTPLPSTQKCCQPDFSKFKQYPFQDRKESSDVL FQRSSGSEGSVHKRRFFTFLLQPEEQRDAAEATPSFQNEKCEKTGDLIDLTLKL" gene complement(24201949..24205806) /locus_tag="TCM_029761" /note="dbxref CacaoGD:Thecc1EG029761" mRNA complement(join(24201949..24202536,24202657..24202965, 24203053..24203308,24203402..24203523,24203634..24203815, 24203917..24204144,24204966..24205806)) /locus_tag="TCM_029761" /product="Sodium/calcium exchanger family protein / calcium-binding EF hand family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021164001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031703t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021164001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6975t1" CDS complement(join(24202288..24202536,24202657..24202965, 24203053..24203308,24203402..24203523,24203634..24203815, 24203917..24204144,24204966..24205344)) /locus_tag="TCM_029761" /note="paralog of Thecc1EG031703t1" /codon_start=1 /product="Sodium/calcium exchanger family protein / calcium-binding EF hand family protein, putative" /protein_id="EOY28087.1" /db_xref="Phytozome:GSVIVT01021164001" /db_xref="TAIR:AT1G53210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2L9" /translation="MTMLRFTVAILVLILTINYGSGSRSIKEKSSPVSDGMDQTSKSS VLELDLPITTTVTCEPIYGFLPCTTTLWGQLFLLVVYEYLLSLSEEFISSGSNLFFQM FGTGIFGASLFHILGIIPQVMLVLVSGASASGETIEARATIGMGLLAGSAVLMLTLVW GSVIAFGSYDLSDTSSPNSSNPDNADTSISSNSKNKKPFSLTGYGVRTDIETRYSAII MILSMVPFLILQLAKILSSATAVRVVVLISLIVTLALLGGYCTYQVFEPWIQDRRLEY LMRRYIQKNLLHRLVSGNGRANEFEIKKLFLKIDKNNNSRISPAELRAFILGIQIEEV GLDEEDFETKVMEEFDFSGDSDINETEFVRGVSNWLNKVNDQAQGERRLFHVNAKKND EEKRSLLPAKKRSKARKGTDNPWWNYTKAFFLITLGTAITVLLANPLMITLQEFSTSA NIPSFLVSYVVIPWALSFRLAFRAISSARQKTENAASLTFSELYGAVFMNNVMGLVIF LSLVYIRNIPWGVSAEVLVVLLICTAMGLFATFSTKIELWTCILVYLLYPISLLLIYV LTNVLGWS" gene complement(24205672..24214892) /locus_tag="TCM_029762" /note="dbxref CacaoGD:Thecc1EG029762" mRNA complement(join(24205672..24206480,24207119..24207198, 24207330..24207383,24208046..24208132,24208344..24208442, 24208777..24208848,24209118..24209207,24209436..24209600, 24209850..24209940,24210026..24210126,24210662..24210715, 24210820..24210903,24210997..24211043,24211485..24211590, 24212058..24212153,24212335..24212404,24212597..24212682, 24212810..24212879,24213263..24213342,24213455..24213544, 24213700..24213774,24213953..24214097,24214207..24214892)) /locus_tag="TCM_029762" /product="RNA helicase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29900.m001570.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034192t2" /inference="similar to AA sequence:ricco:29900.m001570" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7037t3" mobile_element complement(24205715..24205763) /note="source:CACAO_M_S_E89781_F51_scaffold_8 1810 1858" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(24206051..24206480,24207119..24207198, 24207329..24207383,24208046..24208133,24208344..24208442, 24209118..24209207,24209436..24209600,24209850..24209940, 24210026..24210126,24210662..24210715,24210820..24210903, 24210997..24211043,24211485..24211590,24212058..24212153, 24212335..24212404,24212597..24212682,24212810..24212879, 24213263..24213342,24213455..24213544,24213700..24213774, 24213953..24214097,24214207..24214339)) /locus_tag="TCM_029762" /product="RNA helicase family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29900.m001570.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034192t3" /inference="similar to AA sequence:ricco:29900.m001570" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7037t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7037t3" CDS complement(join(24206333..24206480,24207119..24207198, 24207330..24207383,24208046..24208132,24208344..24208442, 24208777..24208848,24209118..24209207,24209436..24209600, 24209850..24209940,24210026..24210126,24210662..24210715, 24210820..24210903,24210997..24211043,24211485..24211590, 24212058..24212153,24212335..24212404,24212597..24212682, 24212810..24212879,24213263..24213342,24213455..24213544, 24213700..24213774,24213953..24214097,24214207..24214310)) /locus_tag="TCM_029762" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29900.m001570; paralog of Thecc1EG034192t2" /codon_start=1 /product="RNA helicase family protein isoform 1" /protein_id="EOY28088.1" /db_xref="TAIR:AT4G18465.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JRJ6" /translation="MAQFWKPGTEKPRLLDDEEGGVLFLSSSFSSSSSGYGYASIEKQ RQRLPVYKYRTSILYLVESHATTIVVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP RRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDISNPDATRIKFLTDGVLLREMMEDPL LTKYSVIMVDEAHERSISTDILLGLLKKIQKRRPELRLVISSATIEAKAMSDFFQSSK RRRVSEGEELRPRLEPAILSVEGRGFNVQIHYVEDPVQDYVQAAVSTVLLIHDQEPAG DILVFLTGQDDIDVAVKMLTEEARSDGKHSSGLIILPLYSGLSRAEQDLVFSPTPKGK RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGR AGRLRPGKCYRLYSEEYFVNEMSAQGIPEIQRSNLVSCVIQLKALGIDNILGFDWPAS PSPESMIRALEVLYSLGVLNDDAKLTSPVGFQVAEIPLEPMISKMILASNELGCSEEI ITIAAVLSIQSIWFSGRGVQRELDEAKLRFAAAEGDHVTFLNIYKGFLQSGKSSQWCH RNFINYHAMKKVMEIREQLKRIALRLGIVLKSCERDTQLVRKAVTAGFFANACRLEAF SHSGMYKTIRGFQEVYIHPSSVLFRVNPKWVIYHSLVSTDRQYMRNVISIDPSWLTEA APHFYQQQRLNPIIH" mRNA complement(join(<24206454..24206480,24207119..24207198, 24207330..24207383,24208046..24208132,24208344..24208442, 24209436..24209600,24209850..24209940,24210026..24210126, 24210662..24210715,24210820..24210903,24210997..24211043, 24211485..24211590,24212058..24212153,24212335..24212404, 24212597..24212682,24212810..24212879,24213263..24213342, 24213455..24213544,24213700..24213774,24213953..24214097, 24214207..>24214300)) /locus_tag="TCM_029762" /product="ATP-dependent RNA helicase DDX35 isoform 7" /inference="alignment:exonerate- protein:2:ricco:29900.m001570.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034192t2" /inference="similar to AA sequence:ricco:29900.m001570" /note="transcript variant 7; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc37t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7037t3" mRNA complement(join(<24206454..24206480,24207119..24207198, 24207330..24207383,24208046..24208132,24208344..24208442, 24208777..24208848,24209436..24209600,24209850..24209940, 24210026..24210126,24210662..24210715,24210820..24210903, 24210997..24211043,24211485..24211590,24212058..24212153, 24212335..24212404,24212597..24212682,24212810..24212879, 24213263..24213342,24213455..24213544,24213700..24213774, 24213953..24214097,24214207..>24214300)) /locus_tag="TCM_029762" /product="RNA helicase family protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:29900.m001570.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034192t2" /inference="similar to AA sequence:ricco:29900.m001570" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc37t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7037t3" mRNA complement(join(<24206454..24206480,24207119..24207198, 24207330..24207383,24208046..24208132,24208344..24208442, 24208777..24208848,24209118..24209207,24209436..24209600, 24209850..24209940,24210026..24210126,24210662..24210715, 24210820..24210903,24210997..24211043,24211485..24211590, 24212058..24212153,24212335..24212404,24212597..24212682, 24212810..24212879,24213263..24213347,24213455..24213544, 24213700..24213774,24213953..24214097,24214207..24214300)) /locus_tag="TCM_029762" /product="RNA helicase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29900.m001570.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004856t1" /inference="similar to AA sequence:ricco:29900.m001570" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc37t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7037t3" CDS complement(join(<24206456..24206480,24207119..24207198, 24207330..24207383,24208046..24208132,24208344..24208442, 24209436..24209600,24209850..24209940,24210026..24210126, 24210662..24210715,24210820..24210903,24210997..24211043, 24211485..24211590,24212058..24212153,24212335..24212404, 24212597..24212682,24212810..24212879,24213263..24213342, 24213455..24213544,24213700..24213774,24213953..24214097, 24214207..>24214298)) /locus_tag="TCM_029762" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:29900.m001570; paralog of Thecc1EG034192t2" /codon_start=1 /product="ATP-dependent RNA helicase DDX35 isoform 7" /protein_id="EOY28094.1" /db_xref="TAIR:AT4G18465.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JRJ6" /translation="WKPGTEKPRLLDDEEGGVLFLSSSFSSSSSGYGYASIEKQRQRL PVYKYRTSILYLVESHATTIVVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA VQAVASRVAEEMGVKVGEEVGYTIRFEDISNPDATRIKFLTDGVLLREMMEDPLLTKY SVIMVDEAHERSISTDILLGLLKKIQKRRPELRLVISSATIEAKAMSDFFQSSKRRRV SEGEELRPRLEPAILSVEGRGFNVQIHYVEDPVQDYVQAAVSTVLLIHDQEPAGDILV FLTGQDDIDVAVKMLTEEARSDGKHSSGLIILPLYSGLSRAEQDLVFSPTPKGKRKVV ISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRL RPGKCYRLYSEEYFVNEMSAQGIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPE SMIRALEVLYSLGVLNDDAKLTSPVGFQVAEIPLGDHVTFLNIYKGFLQSGKSSQWCH RNFINYHAMKKVMEIREQLKRIALRLGIVLKSCERDTQLVRKAVTAGFFANACRLEAF SHSGMYKTIRGFQEVYIHPSSVLFRVNPKWVIY" CDS complement(join(<24206456..24206480,24207119..24207198, 24207330..24207383,24208046..24208132,24208344..24208442, 24208777..24208848,24209436..24209600,24209850..24209940, 24210026..24210126,24210662..24210715,24210820..24210903, 24210997..24211043,24211485..24211590,24212058..24212153, 24212335..24212404,24212597..24212682,24212810..24212879, 24213263..24213342,24213455..24213544,24213700..24213774, 24213953..24214097,24214207..>24214298)) /locus_tag="TCM_029762" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29900.m001570; paralog of Thecc1EG034192t2" /codon_start=1 /product="RNA helicase family protein isoform 5" /protein_id="EOY28092.1" /db_xref="TAIR:AT4G18465.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JRJ6" /translation="WKPGTEKPRLLDDEEGGVLFLSSSFSSSSSGYGYASIEKQRQRL PVYKYRTSILYLVESHATTIVVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA VQAVASRVAEEMGVKVGEEVGYTIRFEDISNPDATRIKFLTDGVLLREMMEDPLLTKY SVIMVDEAHERSISTDILLGLLKKIQKRRPELRLVISSATIEAKAMSDFFQSSKRRRV SEGEELRPRLEPAILSVEGRGFNVQIHYVEDPVQDYVQAAVSTVLLIHDQEPAGDILV FLTGQDDIDVAVKMLTEEARSDGKHSSGLIILPLYSGLSRAEQDLVFSPTPKGKRKVV ISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRL RPGKCYRLYSEEYFVNEMSAQGIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPE SMIRALEVLYSLGVLNDDAKLTSPVGFQVAEIPLSIWFSGRGVQRELDEAKLRFAAAE GDHVTFLNIYKGFLQSGKSSQWCHRNFINYHAMKKVMEIREQLKRIALRLGIVLKSCE RDTQLVRKAVTAGFFANACRLEAFSHSGMYKTIRGFQEVYIHPSSVLFRVNPKWVIY" CDS complement(join(<24206456..24206480,24207119..24207198, 24207330..24207383,24208046..24208132,24208344..24208442, 24208777..24208848,24209118..24209207,24209436..24209600, 24209850..24209940,24210026..24210126,24210662..24210715, 24210820..24210903,24210997..24211043,24211485..24211590, 24212058..24212153,24212335..24212404,24212597..24212682, 24212810..24212879,24213263..24213347,24213455)) /locus_tag="TCM_029762" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29900.m001570; paralog of Thecc1EG004856t1" /codon_start=1 /product="RNA helicase family protein isoform 2" /protein_id="EOY28089.1" /db_xref="TAIR:AT4G18465.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JRJ6" /translation="MQDATRIKFLTDGVLLREMMEDPLLTKYSVIMVDEAHERSISTD ILLGLLKKIQKRRPELRLVISSATIEAKAMSDFFQSSKRRRVSEGEELRPRLEPAILS VEGRGFNVQIHYVEDPVQDYVQAAVSTVLLIHDQEPAGDILVFLTGQDDIDVAVKMLT EEARSDGKHSSGLIILPLYSGLSRAEQDLVFSPTPKGKRKVVISTNIAETSLTLEGIV YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRLRPGKCYRLYSEEYFVN EMSAQGIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPESMIRALEVLYSLGVLN DDAKLTSPVGFQVAEIPLEPMISKMILASNELGCSEEIITIAAVLSIQSIWFSGRGVQ RELDEAKLRFAAAEGDHVTFLNIYKGFLQSGKSSQWCHRNFINYHAMKKVMEIREQLK RIALRLGIVLKSCERDTQLVRKAVTAGFFANACRLEAFSHSGMYKTIRGFQEVYIHPS SVLFRVNPKWVIY" mRNA complement(join(24206458..24206480,24207119..24207383, 24208046..24208132,24208344..24208442,24208777..24208848, 24209118..24209207,24209436..24209600,24209850..24209940, 24210026..24210126,24210662..24210715,24210820..24210903, 24210997..24211043,24211485..24211590,24212058..24212153, 24212335..24212404,24212597..24212682,24212810..24212879, 24213263..24213347,24213455..24213544,24213700..24213774, 24213953..24214097,24214207..24214234)) /locus_tag="TCM_029762" /product="RNA helicase family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29900.m001570.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004856t1" /inference="similar to AA sequence:ricco:29900.m001570" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc37t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7037t3" mRNA complement(join(<24207175..24207198,24207330..24207383, 24208046..24208132,24208344..24208442,24209118..24209207, 24209436..24209600,24209850..24209940,24210026..24210126, 24210662..24210715,24210820..24210903,24210997..24211043, 24211485..24211590,24212058..24212153,24212335..24212404, 24212597..24212682,24212810..24212879,24213263..24213347, 24213455..24213544,24213700..24213774,24213953..24214097, 24214207..24214234)) /locus_tag="TCM_029762" /product="RNA helicase family protein isoform 6" /inference="alignment:exonerate- protein:2:ricco:29900.m001570.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004856t1" /inference="similar to AA sequence:ricco:29900.m001570" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc37t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7037t3" CDS complement(join(<24207175..24207198,24207330..24207383, 24208046..24208132,24208344..24208442,24209118..24209207, 24209436..24209600,24209850..24209940,24210026..24210126, 24210662..24210715,24210820..24210903,24210997..24211043, 24211485..24211590,24212058..24212153,24212335..24212404, 24212597..24212682,24212810..24212879,24213263..24213347, 24213455)) /locus_tag="TCM_029762" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29900.m001570; paralog of Thecc1EG004856t1" /codon_start=1 /product="RNA helicase family protein isoform 6" /protein_id="EOY28093.1" /db_xref="TAIR:AT4G18465.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JRJ6" /translation="MQDATRIKFLTDGVLLREMMEDPLLTKYSVIMVDEAHERSISTD ILLGLLKKIQKRRPELRLVISSATIEAKAMSDFFQSSKRRRVSEGEELRPRLEPAILS VEGRGFNVQIHYVEDPVQDYVQAAVSTVLLIHDQEPAGDILVFLTGQDDIDVAVKMLT EEARSDGKHSSGLIILPLYSGLSRAEQDLVFSPTPKGKRKVVISTNIAETSLTLEGIV YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRLRPGKCYRLYSEEYFVN EMSAQGIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPESMIRALEVLYSLGVLN DDAKLTSPVGFQVAEIPLEPMISKMILASNELGCSEEIITIAAVLSIQGDHVTFLNIY KGFLQSGKSSQWCHRNFINYHAMKKVMEIREQLKRIALRLGIVLKSCERDTQLVRKAV TAGFFANACRLEAFSHSGMY" CDS complement(join(24207291..24207383,24208046..24208132, 24208344..24208442,24208777..24208848,24209118..24209207, 24209436..24209600,24209850..24209940,24210026..24210126, 24210662..24210715,24210820..24210903,24210997..24211043, 24211485..24211590,24212058..24212153,24212335..24212404, 24212597..24212682,24212810..24212879,24213263..24213347, 24213455)) /locus_tag="TCM_029762" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29900.m001570; paralog of Thecc1EG004856t1" /codon_start=1 /product="RNA helicase family protein isoform 3" /protein_id="EOY28090.1" /db_xref="TAIR:AT4G18465.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JRJ6" /translation="MQDATRIKFLTDGVLLREMMEDPLLTKYSVIMVDEAHERSISTD ILLGLLKKIQKRRPELRLVISSATIEAKAMSDFFQSSKRRRVSEGEELRPRLEPAILS VEGRGFNVQIHYVEDPVQDYVQAAVSTVLLIHDQEPAGDILVFLTGQDDIDVAVKMLT EEARSDGKHSSGLIILPLYSGLSRAEQDLVFSPTPKGKRKVVISTNIAETSLTLEGIV YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRLRPGKCYRLYSEEYFVN EMSAQGIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPESMIRALEVLYSLGVLN DDAKLTSPVGFQVAEIPLEPMISKMILASNELGCSEEIITIAAVLSIQSIWFSGRGVQ RELDEAKLRFAAAEGDHVTFLNIYKGFLQSGKSSQWCHRNFINYHAMKKVMEIREQLK RIALRLGIVLKSCERDTQLVRKAVTAGFFANACRLEVILIPRRMVTCL" CDS complement(join(24208059..24208133,24208344..24208442, 24209118..24209207,24209436..24209600,24209850..24209940, 24210026..24210126,24210662..24210715,24210820..24210903, 24210997..24211043,24211485..24211590,24212058..24212153, 24212335..24212404,24212597..24212682,24212810..24212879, 24213263..24213342,24213455..24213544,24213700..24213774, 24213953..24214097,24214207..24214310)) /locus_tag="TCM_029762" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29900.m001570; paralog of Thecc1EG034192t3" /codon_start=1 /product="RNA helicase family protein isoform 4" /protein_id="EOY28091.1" /db_xref="TAIR:AT4G18465.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JRJ6" /translation="MAQFWKPGTEKPRLLDDEEGGVLFLSSSFSSSSSGYGYASIEKQ RQRLPVYKYRTSILYLVESHATTIVVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP RRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDISNPDATRIKFLTDGVLLREMMEDPL LTKYSVIMVDEAHERSISTDILLGLLKKIQKRRPELRLVISSATIEAKAMSDFFQSSK RRRVSEGEELRPRLEPAILSVEGRGFNVQIHYVEDPVQDYVQAAVSTVLLIHDQEPAG DILVFLTGQDDIDVAVKMLTEEARSDGKHSSGLIILPLYSGLSRAEQDLVFSPTPKGK RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGR AGRLRPGKCYRLYSEEYFVNEMSAQGIPEIQRSNLVSCVIQLKALGIDNILGFDWPAS PSPESMIRALEVLYSLGVLNDDAKLTSPVGFQVAEIPLEPMISKMILASNELGCSEEI ITIAAVLSIQGDHVTFLNIYKGFLQSGKSSQWCHRNFINYHAMEKSNGNQRTTQKNST EVGHCLEIL" gene 24214987..24221821 /locus_tag="TCM_029763" /note="dbxref CacaoGD:Thecc1EG029763" mRNA join(24214987..24215558,24215654..24216933, 24217574..24217877,24218053..24218450,24218567..24219549, 24221555..24221821) /locus_tag="TCM_029763" /product="Glutamate-gated kainate-type ion channel receptor subunit GluR5, putative" /inference="alignment:exonerate-protein:2:frave:gene10719" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029764t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s07800.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g6981t2" CDS join(24215210..24215558,24215654..24216933, 24217574..24217877,24218053..24218450,24218567..24218995) /locus_tag="TCM_029763" /note="paralog of Thecc1EG029764t1" /codon_start=1 /product="Glutamate-gated kainate-type ion channel receptor subunit GluR5, putative" /protein_id="EOY28095.1" /db_xref="Phytozome:POPTR_0011s07800.1" /db_xref="TAIR:AT2G29120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2M1" /translation="MRELHSKDEKSMQTVKTRRPFPLISVNKVSTSYLLFPLLIVSFL LVLFHGAQAANIESVTEIRIGAIIDANTRIGKEEKTALEIAVANFNTSKSRNHKLSLY FHDLGRETFKAALAAEELIKEKKVKVIVGMDSWEKAALVADVGTRAQVPVLSFVAPAI TPPLAATRWPFLIRIASNGLEQMRCISALVRAYNWRRVVAIYEDDTYGGDSGNLALLS EKLRKVGSQIEHSLVLPPFSSLSDPKRFIQEKLRKLRTEIQSRVFILLKLSSPMTIHL FRQAKEMELVGRNTAWILSDTITSYLDSFNHSVIFSMEGSLGIKANYSEESSSYLKFY AQFREVFLSKYPEENEFKPGIHALRAYDSIKAIELAIKRTSSNHSSQKLLLRNILSSN FNGLSGKIRFKAGNLNQTQSLRIVNVVGKKYKEIDYWLPKSGFSKTPSGGENSGANDG ETVKALAGIVIWPGDSLEDPKGWAMPTADKPMKIGVPRRTSFEEFVEFQGETPTGFCI DLFEMVLRSLDYNLSYEFFPHRDSYDDLIFAVSNKTYDAAVGDITILAERMEYVEFTQ PFVESGLSMIAPTKSDSEWMFMKPFTLEMWVATGALFIYTMFIVWFLEHSSNPEFRGG LKNEIGTALWFTFSSLFFAHRERIYSNFTKVVVLVWLFLVFILTSSYTASLSSLLTVK ELESNLDIQSVRERGLNVGCDNDSFVNTYLKTVLSFKEEQIHIFNSSESSYVDEFRKN RIDAAFLEAPYEKVFLNKYCKGYASISPTYRFGGFGFAFQKGSPIAADFSRAILKLSE KGNLTSLEKYWFPPSAECNAANTKIESLSLHSFWGIYAISAATSTLCFLLFLLKLLKN FGHQQEAFRGNVSPGRNGTWNMTVGLAKYFYKGEVNLPRSFRSASTSSRAQALDQRRS LKWNM" gene 24219831..24226785 /locus_tag="TCM_029764" /note="dbxref CacaoGD:Thecc1EG029764" mRNA join(24219831..24220074,24220422..24220577, 24220661..24220901,24221735..24222094,24222198..24223489, 24224215..24224521,24224828..24225225,24225599..24226785) /locus_tag="TCM_029764" /product="Glutamate-gated kainate-type ion channel receptor subunit GluR5, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400039805.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029763t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05180.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1206t3_C2" CDS join(24219991..24220074,24220422..24220577, 24220661..24220901,24221735..24222094,24222198..24223489, 24224215..24224521,24224828..24225225,24225599..24226096) /locus_tag="TCM_029764" /note="paralog of Thecc1EG029763t1" /codon_start=1 /product="Glutamate-gated kainate-type ion channel receptor subunit GluR5, putative" /protein_id="EOY28096.1" /db_xref="Phytozome:POPTR_0004s05180.1" /db_xref="TAIR:AT2G29120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2M2" /translation="MGKFSSVKTGNSLLLPLPSTASEDLALRVFKKRSPIATDISKAI LNLNEGGILKAMEEIKFAYSTEVWHSLAGPSSIASGQEKYRSNTSPRNNSAWNKAVRL ARFIYQGQEINLARAATLPRSPDVVGRSSSRWKYSSPDTAENHEEASAVGEVEMLYIP VAISYTFYVFFNNMNKTFCYDVEAQKPSCIIFANRVSKLWLFFSVFISLLLVFSYGEE TTKDDKVTNIGAIIDVDSRIGREEKTALEIAVQSFNDNDSNNHKLSLHIQDSRRDPLV AATAAQKLIKEKEVKVIIGMETWEEAALVADIGSRAQVPVLSFAAPAITPPLAASRWP FLVRMASGDSEQMKCIAAIISSFNWKRVIVIYEDDAFGGDSGKLALLSEALQDVGSEI DYRLVLPPYSSLSNPNKVVQEGLMKLLNIQSRVFIVLQSSLSMTIHLFDNAKKIGLLG RHSAWIVTDTISSYLDSFSSSVISSMEGTLGIKTYYSEDSSLYKKFYPQFRKSFRNEY PEEDNFQPGINALRAYDSIGIITQAMERMKIDDNSPKTLLENIFSSNSTGLSGEIRFE ERKPAHDPILRIVNVVGKKYKELDFWLPEIGLSKNYEKNNETGYLGDISVDLAGRVTW PADLKLVPKGWAMPTNMKPMIIGVPARTSFEKFVKVEDGKYPGEKHYDGFCIKLFYEI LGVLEYALPYKFDPHNGTYDELVHKVYNKTYDAAVGDITILATRTKYVEFTQPYAESG LSMIVPAKPEGSAWIFLKPFTTEMWLVTGCILIYTMLIVWFLEHQSNPEFRGPWNNQL GTALWFTFSSLFFAHREKINSNLTRVVVVIWLFVVLILNSSYTASLTSMLTVQRLVPN ITDIESLKGANMKIGCDGDSFVRTYLEEVLEFRSNNIENVSSEYSYEGEFKSSHIAAA FLELPYGKVFLSEYCKQFTTTTPTFRFGGLGFVFQKGSPMAADFSRAILKLSEDGTLK KLEEKWFAPSLVCSADVTDDSRTDSLSLHSFWGLYLISGATSTFCFLLFLAHLLRKYG SQEDHAGNLSLVDESVWIRAIRVARYLYHGEVCIQGEASPAPLAPDINEWNSRRWDYE SPTDTNMENLEVTSQEKAEIEMM" gene complement(24226792..24232985) /locus_tag="TCM_029765" /note="dbxref CacaoGD:Thecc1EG029765" mRNA complement(join(24226792..24227571,24227774..24227877, 24227961..24228026,24228125..24228239,24228956..24229062, 24229167..24229256,24229393..24229503,24230165..24230230, 24230344..24230409,24230661..24230810,24230958..24231032, 24231122..24231219,24231800..24231865,24231970..24232069, 24232222..24232383,24232467..24232586,24232674..24232836)) /locus_tag="TCM_029765" /product="Apoptosis inhibitory protein 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05160.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021154001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16712t3" CDS complement(join(24227379..24227571,24227774..24227877, 24227961..24228026,24228125..24228239,24228956..24229062, 24229167..24229256,24229393..24229503,24230165..24230230, 24230344..24230409,24230661..24230810,24230958..24231032, 24231122..24231219,24231800..24231865,24231970..24232069, 24232222..24232383,24232467..24232553)) /locus_tag="TCM_029765" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Apoptosis inhibitory protein 5 isoform 1" /protein_id="EOY28097.1" /db_xref="Phytozome:GSVIVT01021154001" /db_xref="TAIR:AT2G34040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXH2" /translation="MTDASEEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIDATKTS LKAKQLAAQLIPRFFKFFPNLSSRALNAHFDLIEEEDLAVRVQAIRGLPLFCKDTKEY ISKIVDILGQLLTAEEIVERDAVHKALMSVLRQDVKESLTALFKHIWSVEDPSQDDTI RDKVLCFIRDKVFPLKAELLRPQEEMERHITDLIKKSLGDVTGAEFRMFMDFLKSLSI FGEKAPPERLKELIGIIEGQADLDAQFDVSDADHIDRLISCLFMALPFFVRGASGSKF LNYINKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVVQLLKKYMPRRK TGEEMNFTYVECLLFAFHHLAHKAPNALNSLCGYKIVTGQPSDRLGEDFSEFYKDFTE RLSNVEDLTRATMKKLTQGMAEHNKAMAAAKSDEAKDSIKTQKQNTTTGLRTCNNILA MTKPLHSKTPSFIGDKSVNLSWKEVIKPSVPSVSTSTGVKRPANASNGSNNMSTKKGR GAGGMQNQLVNRALEGISYGGRGGGGRGRGRGWGGRGRGRGYR" mRNA complement(join(<24229035..24229062,24229167..24229256, 24229393..24229503,24230165..24230230,24230344..24230409, 24230661..24230810,24230958..24231032,24231122..24231219, 24231800..24231865,24231970..24232069,24232222..24232383, 24232467..24232578,24232674..24232985)) /locus_tag="TCM_029765" /product="Apoptosis inhibitory protein 5 (API5) isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05160.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021154001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc69t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16712t3" CDS complement(join(<24229036..24229062,24229167..24229256, 24229393..24229503,24230165..24230230,24230344..24230409, 24230661..24230810,24230958..24231032,24231122..24231219, 24231800..24231865,24231970..24232069,24232222..24232383, 24232467..24232553)) /locus_tag="TCM_029765" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Apoptosis inhibitory protein 5 (API5) isoform 2" /protein_id="EOY28098.1" /db_xref="Phytozome:GSVIVT01021154001" /db_xref="TAIR:AT2G34040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXH2" /translation="MTDASEEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIDATKTS LKAKQLAAQLIPRFFKFFPNLSSRALNAHFDLIEEEDLAVRVQAIRGLPLFCKDTKEY ISKIVDILGQLLTAEEIVERDAVHKALMSVLRQDVKESLTALFKHIWSVEDPSQDDTI RDKVLCFIRDKVFPLKAELLRPQEEMERHITDLIKKSLGDVTGAEFRMFMDFLKSLSI FGEKAPPERLKELIGIIEGQADLDAQFDVSDADHIDRLISCLFMALPFFVRGASGSKF LNYINKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVVQLLKKYMPRRK TGEEMNFTYVECLLFAFHHLAHKAPNALNSLC" gene complement(24233231..24235789) /locus_tag="TCM_029766" /note="dbxref CacaoGD:Thecc1EG029766" mRNA complement(join(24233231..24233410,24233817..24233983, 24234062..24234362,24235000..24235061,24235154..24235233, 24235329..24235740)) /locus_tag="TCM_029766" /product="ATP synthase mitochondrial F1 complex assembly factor 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29900.m001567" /inference="similar to AA sequence:Phytozome:POPTR_0004s05150.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12527t00001" CDS complement(join(24233346..24233410,24233817..24233983, 24234062..24234362,24235000..24235061,24235154..24235233, 24235329..24235658)) /locus_tag="TCM_029766" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ATP synthase mitochondrial F1 complex assembly factor 1 isoform 1" /protein_id="EOY28099.1" /db_xref="Phytozome:POPTR_0004s05150.1" /db_xref="TAIR:AT2G34050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2M6" /translation="MQRLTSGITRTVKASSSLRALLLKEAPSSSSSCRLPERSFSAFS LQQHVQNPQKEAIPGDFLKWRSLGSCRTSRFATGFTPLQPKPLNSVMDLDRAKNRSPE DLVSIWDDYHLGRGHIGLTMKAKLYRLLEQRGSDCSRYFVIPLWRGSGYTTMFAQVQL PHMLFTGLEDYKARGTQAAPYFTATFYTEFAESKDLVLIRGDIVFTSKLTDEEAKWLL ETTQSFYLNDVRYKQVERFNKEPREFEFKDVLRALDMPIMHWPNGRIISRQQVMFLTE VVLSTTCSFSPGGENGVEMTTFVPESTLKREIILLNRHKYGITQHWSRQKIGQLKRTT " mRNA complement(join(<24234059..24234362,24235000..24235058, 24235154..24235233,24235329..24235789)) /locus_tag="TCM_029766" /product="Chloroplast isoform 2" /inference="alignment:exonerate- protein:2:ricco:29900.m001567" /inference="similar to AA sequence:Phytozome:POPTR_0004s05150.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12527t00001; inference alignment:Newbler:10:TSA:cgbaP2_g12527t00001" CDS complement(join(<24234061..24234362,24235000..24235058, 24235154..24235233,24235329..24235658)) /locus_tag="TCM_029766" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Chloroplast isoform 2" /protein_id="EOY28100.1" /db_xref="Phytozome:POPTR_0004s05150.1" /db_xref="TAIR:AT2G34050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2M6" /translation="MQRLTSGITRTVKASSSLRALLLKEAPSSSSSCRLPERSFSAFS LQQHVQNPQKEAIPGDFLKWRSLGSCRTSRFATGFTPLQPKPLNSVMDLDRAKNRSPE DLVSIWDDYHLGRGHIGLTMKAKLYRLLEQRGSDCRYFVIPLWRGSGYTTMFAQVQLP HMLFTGLEDYKARGTQAAPYFTATFYTEFAESKDLVLIRGDIVFTSKLTDEEAKWLLE TTQSFYLNDVRYKQVERFNKEPREFEFKDVLRALDMPIM" gene 24237351..24242736 /locus_tag="TCM_029767" /note="dbxref CacaoGD:Thecc1EG029767" mRNA join(24237351..24238125,24238270..24238470, 24238983..24239857) /locus_tag="TCM_029767" /product="Peroxidase 19, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29900.m001566" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011986t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05140.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc199t15" mRNA join(<24237674..24238125,24238270..24238470, 24238983..24240116,24240194..24240285,24240399..24240465, 24240577..24240607,24241623..24241763,24242294..24242319, 24242419..24242477,24242562..24242736) /locus_tag="TCM_029767" /product="Peroxidase 19, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29900.m001566" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011986t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05140.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7089t2; alternateUTRof:Thecc1EG029767t2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc199t15" mRNA join(<24237674..24238125,24238270..24238470, 24238983..24240116,24240194..24240285,24240399..24240465, 24240577..24240607,24241623..24241763,24242294..24242319, 24242424..24242477,24242562..24242736) /locus_tag="TCM_029767" /product="Peroxidase 19, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29900.m001566" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011986t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05140.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7089t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc199t15" CDS join(<24237676..24238125,24238270..24238470, 24238983..24239561) /locus_tag="TCM_029767" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011986t1" /codon_start=1 /product="Peroxidase 19, putative isoform 2" /protein_id="EOY28102.1" /db_xref="Phytozome:POPTR_0004s05140.1" /db_xref="TAIR:AT2G34060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S954" /translation="GTLSFSLSFSCTIGFHGSGLSSALVAAICPTTNFCTWSKHFYIL HYYCFLCPELPTPIDYTIMSVPSPFSSPFVFTCLLFIFLLTLSSSDCQPISTPAKRRP RQLSVSYYAKSCPQLEQLIGSITSQQFKEAPVSAPATIRLFFHDCFVEGCDASILIAT NPGNKILAEKDAEDNKDLRTEGFDTITRAKTLVESKCPGVVSCADILAIAARDFVHLA GGPYYQVKKGRWDGKISKASRVPYNLPHANSTVDQLIKLFSSKGLTVQDLVVLSGAHT IGFARCKHFVARLYDYKGTMQPDPAIDPRLLKALKMSCPHAGGNADIVAPFDVTTPFL FDHAYYANLEGKLGLLASDQGLFLDPRTKPLVQSLGQDKAKFFQAFSAAMDKMGSIGV KRGRTHGEKRKVCSTHM" CDS join(<24237676..24238125,24238270..24238470, 24238983..24239561) /locus_tag="TCM_029767" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG011986t1" /codon_start=1 /product="Peroxidase 19, putative isoform 2" /protein_id="EOY28103.1" /db_xref="Phytozome:POPTR_0004s05140.1" /db_xref="TAIR:AT2G34060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S954" /translation="GTLSFSLSFSCTIGFHGSGLSSALVAAICPTTNFCTWSKHFYIL HYYCFLCPELPTPIDYTIMSVPSPFSSPFVFTCLLFIFLLTLSSSDCQPISTPAKRRP RQLSVSYYAKSCPQLEQLIGSITSQQFKEAPVSAPATIRLFFHDCFVEGCDASILIAT NPGNKILAEKDAEDNKDLRTEGFDTITRAKTLVESKCPGVVSCADILAIAARDFVHLA GGPYYQVKKGRWDGKISKASRVPYNLPHANSTVDQLIKLFSSKGLTVQDLVVLSGAHT IGFARCKHFVARLYDYKGTMQPDPAIDPRLLKALKMSCPHAGGNADIVAPFDVTTPFL FDHAYYANLEGKLGLLASDQGLFLDPRTKPLVQSLGQDKAKFFQAFSAAMDKMGSIGV KRGRTHGEKRKVCSTHM" CDS join(24237862..24238125,24238270..24238470, 24238983..24239561) /locus_tag="TCM_029767" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011986t1" /codon_start=1 /product="Peroxidase 19, putative isoform 1" /protein_id="EOY28101.1" /db_xref="Phytozome:POPTR_0004s05140.1" /db_xref="TAIR:AT2G34060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S954" /translation="MSVPSPFSSPFVFTCLLFIFLLTLSSSDCQPISTPAKRRPRQLS VSYYAKSCPQLEQLIGSITSQQFKEAPVSAPATIRLFFHDCFVEGCDASILIATNPGN KILAEKDAEDNKDLRTEGFDTITRAKTLVESKCPGVVSCADILAIAARDFVHLAGGPY YQVKKGRWDGKISKASRVPYNLPHANSTVDQLIKLFSSKGLTVQDLVVLSGAHTIGFA RCKHFVARLYDYKGTMQPDPAIDPRLLKALKMSCPHAGGNADIVAPFDVTTPFLFDHA YYANLEGKLGLLASDQGLFLDPRTKPLVQSLGQDKAKFFQAFSAAMDKMGSIGVKRGR THGEKRKVCSTHM" gene 24239945..24243167 /locus_tag="TCM_029768" /note="dbxref CacaoGD:Thecc1EG029768" mRNA join(24239945..24240116,24240194..24240285, 24240399..24240465,24240577..24240607,24241623..24241763, 24242294..24242319,24242419..24242477,24242562..24242879) /locus_tag="TCM_029768" /product="D-tyrosyl-tRNA(Tyr) deacylase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021151001" /inference="similar to AA sequence:Phytozome:POPTR_0011s06070.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc199t7" CDS join(24239967..24240116,24240194..24240285, 24240399..24240465,24240577..24240607,24241623..24241763, 24242294..24242319,24242419..24242477,24242562..24242592) /locus_tag="TCM_029768" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="D-tyrosyl-tRNA(Tyr) deacylase isoform 1" /protein_id="EOY28104.1" /db_xref="Phytozome:POPTR_0011s06070.1" /db_xref="TAIR:AT4G18460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9M7" /translation="MHSLSIFPYFASIIRTENKRKTLLPSKKHRNPQIRAMRAVVQRV ASASVEVDGRIVSEIGPGLLVLVGLHDSDTESDADYICRKVLNMRLFPNESTGKGWDQ SVMQRNYGVLLVSQFTLYGFLKGNKPDFHVAMPPQKAKPFYESLLDKFRKAYQPDAIK DGVFGAMMKVSLVNDGPVTMQLDSSQPSKNTSEKTEES" mRNA join(<24240094..24240116,24240194..24240285, 24240399..24240465,24240577..24240607,24241623..24241763, 24242294..24242319,24242419..24242477,24242562..24242621, 24243046..24243167) /locus_tag="TCM_029768" /product="D-tyrosyl-tRNA(Tyr) deacylase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021151001" /inference="similar to AA sequence:Phytozome:POPTR_0011s06070.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc199t7; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc199t7" CDS join(<24240096..24240116,24240194..24240285, 24240399..24240465,24240577..24240607,24241623..24241763, 24242294..24242319,24242419..24242477,24242562..24242592) /locus_tag="TCM_029768" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="D-tyrosyl-tRNA(Tyr) deacylase isoform 2" /protein_id="EOY28105.1" /db_xref="Phytozome:POPTR_0011s06070.1" /db_xref="TAIR:AT4G18460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9M7" /translation="VASASVEVDGRIVSEIGPGLLVLVGLHDSDTESDADYICRKVLN MRLFPNESTGKGWDQSVMQRNYGVLLVSQFTLYGFLKGNKPDFHVAMPPQKAKPFYES LLDKFRKAYQPDAIKDGVFGAMMKVSLVNDGPVTMQLDSSQPSKNTSEKTEES" mobile_element 24240621..24241576 /note="source:CACAO_M_E49279_F74_scaffold_6 1002 1942" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24242419..24250248) /locus_tag="TCM_029769" /note="dbxref CacaoGD:Thecc1EG029769" mRNA complement(join(24242419..24243192,24243401..24243531, 24244111..24244263,24244413..24244478,24244951..24245020, 24245130..24245200,24245282..24245494,24245632..24245681, 24245753..24245834,24246025..24246096,24246287..24246376, 24246482..24246550,24246639..24246732,24246858..24246924, 24247027..24247339)) /locus_tag="TCM_029769" /product="Negative regulator of systemic acquired resistance, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021150001" /inference="similar to AA sequence:Phytozome:GSVIVT01021150001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7087t4; alternateUTRof:Thecc1EG029769t1; inference alignment:Newbler:10:TSA:cgbaB_g06562t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc239t7" mRNA complement(join(24242882..24243192,24243401..24243531, 24244111..24244263,24244413..24244478,24244951..24245020, 24245130..24245200,24245282..24245494,24245632..24245681, 24245753..24245834,24246025..24246096,24246287..24246376, 24246482..24246550,24246639..24246732,24246858..24246924, 24247027..24247350,24250115..24250248)) /locus_tag="TCM_029769" /product="Negative regulator of systemic acquired resistance, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021150001" /inference="similar to AA sequence:Phytozome:GSVIVT01021150001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06562t00001" CDS complement(join(24243120..24243192,24243401..24243531, 24244111..24244263,24244413..24244478,24244951..24245020, 24245130..24245200,24245282..24245494,24245632..24245681, 24245753..24245834,24246025..24246096,24246287..24246376, 24246482..24246550,24246639..24246732,24246858..24246924, 24247027..24247159)) /locus_tag="TCM_029769" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Negative regulator of systemic acquired resistance, putative isoform 1" /protein_id="EOY28106.1" /db_xref="Phytozome:GSVIVT01021150001" /db_xref="TAIR:AT4G18470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S952" /translation="MVKRKSSNNCNRRIRINRGGMEANTLAILDSNESHKDSQDARDD SVDFLEAVRTASLLPENGTPPTEKMVEAVFQILRAGKSLELIMSSYELLNEIEKRFPR VYMSESSGNDSRELVVINEAWLPFVVFSDVMSSEREATPKNSDGLFDVNGFHELIQGL AELANKTISQRVDTESLGNMLLFQYLVNVLEEDFVPRINMYKETMNWNLLRECLLNML LGSRRVNYKVLMKDCLSTICGLCQDHAGIVDESEHSETSMGKSYENHNTDVAIALLEV QKTTCLAMQKLLTMIMELDMSKKQAHMEGQTTRADGVRTPLAEIILDELTYDRDILSP FLQVFNDPKWKLEIIVQYFLKYTAKPSVRTRRSDVTSEDSTLNRVLKSFSNGTYTRNI IKKIDVEAVQLLLAHAFLAYLSISSQQRLPGMSDCKEDENSSLMEISKDVIAAFNSLR GADENIEISSLGKEALFTAAMIISTTS" CDS complement(join(24243120..24243192,24243401..24243531, 24244111..24244263,24244413..24244478,24244951..24245020, 24245130..24245200,24245282..24245494,24245632..24245681, 24245753..24245834,24246025..24246096,24246287..24246376, 24246482..24246550,24246639..24246732,24246858..24246924, 24247027..24247159)) /locus_tag="TCM_029769" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Negative regulator of systemic acquired resistance, putative isoform 1" /protein_id="EOY28107.1" /db_xref="Phytozome:GSVIVT01021150001" /db_xref="TAIR:AT4G18470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S952" /translation="MVKRKSSNNCNRRIRINRGGMEANTLAILDSNESHKDSQDARDD SVDFLEAVRTASLLPENGTPPTEKMVEAVFQILRAGKSLELIMSSYELLNEIEKRFPR VYMSESSGNDSRELVVINEAWLPFVVFSDVMSSEREATPKNSDGLFDVNGFHELIQGL AELANKTISQRVDTESLGNMLLFQYLVNVLEEDFVPRINMYKETMNWNLLRECLLNML LGSRRVNYKVLMKDCLSTICGLCQDHAGIVDESEHSETSMGKSYENHNTDVAIALLEV QKTTCLAMQKLLTMIMELDMSKKQAHMEGQTTRADGVRTPLAEIILDELTYDRDILSP FLQVFNDPKWKLEIIVQYFLKYTAKPSVRTRRSDVTSEDSTLNRVLKSFSNGTYTRNI IKKIDVEAVQLLLAHAFLAYLSISSQQRLPGMSDCKEDENSSLMEISKDVIAAFNSLR GADENIEISSLGKEALFTAAMIISTTS" mRNA complement(join(24244458..24244840,24244951..24245020, 24245130..24245200,24245282..24245494,24245632..24245681, 24245753..24245834,24246025..24246096,24246287..24246376, 24246482..24246550,24246639..24246732,24246858..24246924, 24247027..24247394)) /locus_tag="TCM_029769" /product="Negative regulator of systemic acquired resistance, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021150001" /inference="similar to AA sequence:Phytozome:GSVIVT01021150001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc243t10; alternateUTRof:Thecc1EG029769t3; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc239t7; inference alignment:Newbler:10:TSA:cgbaB_g06562t00001" mRNA complement(join(24244458..24244840,24244951..24245020, 24245130..24245200,24245282..24245494,24245632..24245681, 24245753..24245834,24246025..24246096,24246287..24246376, 24246482..24246550,24246639..24246732,24246858..24246924, 24247027..24247339)) /locus_tag="TCM_029769" /product="Negative regulator of systemic acquired resistance, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021150001" /inference="similar to AA sequence:Phytozome:GSVIVT01021150001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc239t7; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc239t7; inference alignment:Newbler:10:TSA:cgbaB_g06562t00001" CDS complement(join(24244766..24244840,24244951..24245020, 24245130..24245200,24245282..24245494,24245632..24245681, 24245753..24245834,24246025..24246096,24246287..24246376, 24246482..24246550,24246639..24246732,24246858..24246924, 24247027..24247159)) /locus_tag="TCM_029769" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Negative regulator of systemic acquired resistance, putative isoform 3" /protein_id="EOY28108.1" /db_xref="Phytozome:GSVIVT01021150001" /db_xref="TAIR:AT4G18470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S952" /translation="MVKRKSSNNCNRRIRINRGGMEANTLAILDSNESHKDSQDARDD SVDFLEAVRTASLLPENGTPPTEKMVEAVFQILRAGKSLELIMSSYELLNEIEKRFPR VYMSESSGNDSRELVVINEAWLPFVVFSDVMSSEREATPKNSDGLFDVNGFHELIQGL AELANKTISQRVDTESLGNMLLFQYLVNVLEEDFVPRINMYKETMNWNLLRECLLNML LGSRRVNYKVLMKDCLSTICGLCQDHAGIVDESEHSETSMGKSYENHNTDVAIALLEV QKTTCLAMQKLLTMIMELDMSKKQAHMEGQTTRADGVRTPLAEIILDELTYDRDILSP FLQVNWLRHHIRSIGLGITWSFDHALC" CDS complement(join(24244766..24244840,24244951..24245020, 24245130..24245200,24245282..24245494,24245632..24245681, 24245753..24245834,24246025..24246096,24246287..24246376, 24246482..24246550,24246639..24246732,24246858..24246924, 24247027..24247159)) /locus_tag="TCM_029769" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Negative regulator of systemic acquired resistance, putative isoform 3" /protein_id="EOY28109.1" /db_xref="Phytozome:GSVIVT01021150001" /db_xref="TAIR:AT4G18470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S952" /translation="MVKRKSSNNCNRRIRINRGGMEANTLAILDSNESHKDSQDARDD SVDFLEAVRTASLLPENGTPPTEKMVEAVFQILRAGKSLELIMSSYELLNEIEKRFPR VYMSESSGNDSRELVVINEAWLPFVVFSDVMSSEREATPKNSDGLFDVNGFHELIQGL AELANKTISQRVDTESLGNMLLFQYLVNVLEEDFVPRINMYKETMNWNLLRECLLNML LGSRRVNYKVLMKDCLSTICGLCQDHAGIVDESEHSETSMGKSYENHNTDVAIALLEV QKTTCLAMQKLLTMIMELDMSKKQAHMEGQTTRADGVRTPLAEIILDELTYDRDILSP FLQVNWLRHHIRSIGLGITWSFDHALC" gene 24250519..24253362 /locus_tag="TCM_029770" /note="dbxref CacaoGD:Thecc1EG029770" mRNA join(24250519..24250899,24251248..24251378, 24251487..24251720,24252386..24252635,24252727..24253362) /locus_tag="TCM_029770" /product="GDSL-like Lipase/Acylhydrolase superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002214t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05120.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7031t1; inference alignment:Newbler:10:TSA:cgbaP2_g05794t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1205t2" mRNA join(24250535..24250899,24251248..24251378, 24251487..24251720,24252386..24252632,24252727..24253347) /locus_tag="TCM_029770" /product="GDSL-like Lipase/Acylhydrolase superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002214t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05120.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05794t00001; inference alignment:Newbler:10:TSA:cgbaP2_g05794t00001" CDS join(24250608..24250899,24251248..24251378, 24251487..24251720,24252386..24252635,24252727..24252917) /locus_tag="TCM_029770" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002214t1" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein, putative isoform 2" /protein_id="EOY28111.1" /db_xref="Phytozome:POPTR_0004s05120.1" /db_xref="TAIR:AT5G45950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJ41" /translation="MKKTMVRRAVVLVQVLAMAAAVMPLLSGALDTHRVKQLAATYNV TCVLVFGDSSVDPGNNNYLATPMKGNFLPYGKDFFRGRPTGRFSNGRLATDFIAEALG YTKAIRPFLNKRLRPIDILHGVSFASAASGYDELTANLSNVLPVSKQLEYFRQYKIRL RQLVGARTAEDITKNAVAVMSMGTNDFLQNYNLEPIRPKQYTLEEYQIYLASCMSQDL KTMHSLGITRLVVVGVPPLGCMPLVKTLMNRDTCVENYNNFSASFNSKIKAKLATLRT TLGMKIGYVDAYGIIQDAVNNPKKYGCLIEISKGCCGSGTVEYGDSCKGLSTCADASK YVFWDAVHPTEKMYEIIADQAIDSLEEQLMG" CDS join(24250608..24250899,24251248..24251378, 24251487..24251720,24252386..24252632,24252727..24252917) /locus_tag="TCM_029770" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002214t1" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein, putative isoform 1" /protein_id="EOY28110.1" /db_xref="Phytozome:POPTR_0004s05120.1" /db_xref="TAIR:AT5G45950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJ41" /translation="MKKTMVRRAVVLVQVLAMAAAVMPLLSGALDTHRVKQLAATYNV TCVLVFGDSSVDPGNNNYLATPMKGNFLPYGKDFFRGRPTGRFSNGRLATDFIAEALG YTKAIRPFLNKRLRPIDILHGVSFASAASGYDELTANLSNVLPVSKQLEYFRQYKIRL RQLVGARTAEDITKNAVAVMSMGTNDFLQNYNLEPIRPKQYTLEEYQIYLASCMSQDL KTMHSLGITRLVVVGVPPLGCMPLVKTLMNRDTCVENYNNFSASFNSKIKAKLATLRT TLGMKIGYVDAYGIIQDAVNNPKKYGLIEISKGCCGSGTVEYGDSCKGLSTCADASKY VFWDAVHPTEKMYEIIADQAIDSLEEQLMG" mobile_element complement(24251935..24251972) /note="source:CACAO_M_S_E4863_F51_scaffold_1 5695 5732" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24254389..24257286) /locus_tag="TCM_029771" /note="dbxref CacaoGD:Thecc1EG029771" mRNA complement(join(24254389..24254972,24255057..24255327, 24256053..24256286,24256398..24256528,24256634..24256955, 24257040..24257286)) /locus_tag="TCM_029771" /product="GDSL-like Lipase/Acylhydrolase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s06040.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021147001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7015t1" CDS complement(join(24254764..24254972,24255057..24255327, 24256053..24256286,24256398..24256528,24256634..24256955, 24257040..24257171)) /locus_tag="TCM_029771" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein, putative" /protein_id="EOY28112.1" /db_xref="Phytozome:GSVIVT01021147001" /db_xref="TAIR:AT5G45960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FJ40" /translation="MAKVVEKLRLIRICLVSKPQQPNYNSNSTETLYTKDAFVKRIQL STLFSSQNQLADHMESCHKHPLHPFLFVLFLCMFFFFAEAAGASIKQRPFNNKVSAGF VFGDSTVDPGNNNYVKTFFRSNFPPYGKDLKDQTATGRFTNGKLPTDLIVSYIGIKEY LPPYLDPTLGIEELMTGVSFASAGSGFDPLTPQITSVVSIPKQVEYFKEYKKRLQSAI GKKRMEHIIQNAVFLVSAGTNDFVVNYFTIPIRRKNYTVSAYQQFILQNVKQLLQDLW DEGARRIAVTGLPPMGCLPVVITLNSPNAILERGCIEKFSRVGMEYNQMLQNEVNSMR GRLAHLGAKILYVDIFTPLVDMIQGLGKLDFDEVSQGCCGSGYLEAGFLCNPGSYVCF DASKYVFFDSIHPTEKTYTKLFMANHHVVDSVIQDWDLND" mobile_element complement(24257697..24257777) /note="source:scaffold_5_CACTA_0585 6112 6185" /mobile_element_type="transposon:TIR/CACTA" gene 24261568..24262857 /locus_tag="TCM_029772" /note="dbxref CacaoGD:Thecc1EG029772" mRNA 24261568..24262857 /locus_tag="TCM_029772" /product="AP2/ERF domain-containing transcription factor, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s06020.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05110.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc4051t1" CDS 24261964..24262809 /locus_tag="TCM_029772" /codon_start=1 /product="AP2/ERF domain-containing transcription factor, putative" /protein_id="EOY28113.1" /db_xref="Phytozome:POPTR_0004s05110.1" /db_xref="TAIR:AT4G18450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9M4" /translation="MAVESSQHAASESILENVWANFIGGEEADGATSKITTKSSKSWQ ELPSLDGRDGSMEILQRLPSLGRWISMGADAWEDLLDGIIPSGNIEQSCNDNTSKSIS VSTRGPKVNSVRVEKVATRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAA LAYDKAALRIRGPKAYLNFPLETVAKAMGIDYTEPDFNACLSEKYQGKDSASTYSGFN KNFRNHRKRESRDWEKNGDQVVMVEQPRLKRMASVEEVLEDGYDVLEFQDLGSDYLES LLSSF" gene complement(24264167..24265846) /locus_tag="TCM_029773" /note="dbxref CacaoGD:Thecc1EG029773" mRNA complement(24264167..24265846) /locus_tag="TCM_029773" /product="Ethylene responsive element binding factor 1" /inference="alignment:exonerate-protein:2:frave:gene29787" /inference="similar to AA sequence:ricco:29900.m001559" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16645t1" CDS complement(24264888..24265442) /locus_tag="TCM_029773" /note="dbxref ricco:29900.m001559" /codon_start=1 /product="Ethylene responsive element binding factor 1" /protein_id="EOY28114.1" /db_xref="TAIR:AT4G17500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2N1" /translation="MTSHTEEKAWKESMVQISHSENQLPFNENDSQDMFIYQVLNEAN PHAVAINNFHQFHVPPRNQSSATNMLEPSRTIAKKHYRGVRRRPWGKYAAEIRDSTRN GARVWLGTFVTAEEAALAYDRAAFRMRGAKALLNFPAEVVAASSVQRLRPNLSSTSSE KTNPDSGSSCSTLSISESESSTTG" gene complement(24267477..24268556) /locus_tag="TCM_029774" /note="dbxref CacaoGD:Thecc1EG029774" mRNA complement(24267477..24268556) /locus_tag="TCM_029774" /product="LOB domain-containing-like protein" /inference="alignment:exonerate-protein:2:frave:gene29787" /inference="similar to AA sequence:frave:gene29787" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(24267707..24268480) /locus_tag="TCM_029774" /note="dbxref frave:gene29787" /codon_start=1 /product="LOB domain-containing-like protein" /protein_id="EOY28115.1" /db_xref="TAIR:AT1G06280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S947" /translation="MSSGNGEEVLNSRHACAACKHQRRKCDNDCVFAPHFPANRAHYF REVHKIFGVKNVTNLLEHLDDNDRRRAVESLQWEAFAWKEDPVLGPLGLFKKLEKELE LLKEQLNNPQPVVPYQTKSGLIGFNHNSAGFVANGDDISIANFGYANSPNLGLDVNMN NYAGFFQRADNMENQGVNNIPVVPYYPIPEGQGRLVMQERVLDPVVRTTPVLPKQDAQ SNQIIGSSMRPASHQRGSQGRAHAYYDGSVSGPQARRMH" gene 24270374..24272830 /locus_tag="TCM_029775" /note="dbxref CacaoGD:Thecc1EG029775" mRNA join(24270374..24270546,24270645..24270826, 24270962..24271049,24271159..24271268,24271382..24271445, 24271701..24271765,24271896..24271961,24272264..24272830) /locus_tag="TCM_029775" /product="RAC-like 2" /inference="alignment:exonerate-protein:2:frave:gene17793" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034257t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400018965" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1454t2" CDS join(24270728..24270826,24270962..24271049, 24271159..24271268,24271382..24271445,24271701..24271765, 24271896..24271961,24272264..24272365) /locus_tag="TCM_029775" /note="paralog of Thecc1EG034257t1" /codon_start=1 /product="RAC-like 2" /protein_id="EOY28116.1" /db_xref="Phytozome:PGSC0003DMP400018965" /db_xref="TAIR:AT5G45970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6Z808" /translation="MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIYKKWIA ELRHYAPNVPIVLVGTKLDLRDDKQYLSDHPGATATTTSQGEELKKMIGAVTYIECSS KTQQNVKTVFDAAIKVALRPPKPKRKPRSKRRSCVFL" gene 24271889..24283812 /locus_tag="TCM_029776" /note="dbxref CacaoGD:Thecc1EG029776" mRNA join(24271889..24271961,24272264..24272740, 24277863..24278065,24278411..24279166,24279490..24279739, 24279983..24280179,24283731..24283812) /locus_tag="TCM_029776" /product="Homeobox-3, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05090.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021144001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7029t2" mobile_element complement(24277884..24277945) /note="source:scaffold_5_CACTA_0617 5038 5086" /mobile_element_type="transposon:TIR/CACTA" CDS join(24277936..24278065,24278411..24279166, 24279490..24279734) /locus_tag="TCM_029776" /codon_start=1 /product="Homeobox-3, putative" /protein_id="EOY28117.1" /db_xref="Phytozome:GSVIVT01021144001" /db_xref="TAIR:AT2G33880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HM56" /translation="MASSNRHWPSMFKSKPCNTHHQWQPDINPSLMSSGCHRAPYTSV TGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANV FYWFQNRKSRSKHKQRNLQNSKQQSQQTPPMTNITTITAPSSSSSSSEKSSPKGANKS TLSMSSPNVIDVSNSPTASVNQAYFHQPQNEFLNEPFFFPVQQAAAGTGFTQGFVFSE LNNMVQVPEQPVGPCTSLLLSEILNNGASKKAHEEKMKMQLQLNYPGSTAPSTHTISP LTASTTATITVPSNINHVQGVGESGVVGPGGAARSAVFINDVAFEVAVGPFNVREAFG DDAVLIHSSGQPVLTNEWGVTVQPLQHGGFYYLVRSSIPFSV" mobile_element 24283200..24283346 /note="source:scaffold_7_CACTA_0795 2890 3031" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24283439..24283521 /note="source:scaffold_4_CACTA_0511 5715 5799" /mobile_element_type="transposon:TIR/CACTA" gene 24283996..24286717 /locus_tag="TCM_029778" /note="dbxref CacaoGD:Thecc1EG029778" mRNA join(24283996..24284398,24286037..24286717) /locus_tag="TCM_029778" /product="RAB GTPase A1F" /inference="alignment:exonerate- protein:2:ricco:29646.m001115" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031673t1" /inference="similar to AA sequence:frave:gene29786" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10823t00001" CDS join(24284178..24284398,24286037..24286469) /locus_tag="TCM_029778" /note="dbxref frave:gene29786; paralog of Thecc1EG031673t1" /codon_start=1 /product="RAB GTPase A1F" /protein_id="EOY28118.1" /db_xref="TAIR:AT5G60860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P40393" /translation="MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS TIGVEFATRSIHVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFE NVERWLKELRDHTDANIVIMLVGNKADLRHLRAVATEDAKSFAERENTFFMETSALES LNVENAFTEVLTQIYRVVSRKALDIGDDPAALPKGQTINVGSKDDVSAVKKVGCCSA" gene complement(24287329..24288486) /locus_tag="TCM_029779" /note="dbxref CacaoGD:Thecc1EG029779" mRNA complement(join(24287329..24287535,24288047..24288486)) /locus_tag="TCM_029779" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400039569" /inference="similar to AA sequence:ricco:29900.m001553" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g14066t00001" mRNA complement(join(24287338..24287531,24288047..>24288377)) /locus_tag="TCM_029779" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400039569" /inference="similar to AA sequence:ricco:29900.m001553" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc745t4; inference alignment:Newbler:10:TSA:cgbaP2_g14066t00001" CDS complement(24288072..24288413) /locus_tag="TCM_029779" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29900.m001553" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY28119.1" /db_xref="TAIR:AT1G28540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2N4" /translation="MSEHQKPEHPQNLPPSSASTSKSIPELGNNTAADSSGRPKVRYP NPPDLTNPDPATLRDQWRYAIRQYSRWYSHAWGTAILAGVSFFALGWIIKGSNPLPSF KSDSDKNDHPK" CDS complement(24288072..>24288377) /locus_tag="TCM_029779" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29900.m001553" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY28120.1" /db_xref="TAIR:AT1G28540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHP5" /translation="LPPSSASTSKSIPELGNNTAADSSGRPKVRYPNPPDLTNPDPAT LRDQWRYAIRQYSRWYSHAWGTAILAGVSFFALGWIIKGSNPLPSFKSDSDKNDHPK" gene complement(24288565..24291426) /locus_tag="TCM_029780" /note="dbxref CacaoGD:Thecc1EG029780" mRNA complement(join(24288565..24289140,24289235..24289300, 24289846..24289931,24290099..24290133,24290229..24290315, 24290437..24290514,24290612..24290649,24291118..24291426)) /locus_tag="TCM_029780" /product="Phosphoprotein PP28, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s05960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031663t1" /inference="similar to AA sequence:ricco:29900.m001551" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7120t1" CDS complement(join(24289106..24289140,24289235..24289300, 24289846..24289931,24290099..24290133,24290229..24290315, 24290437..24290514,24290612..24290649,24291118..24291424)) /locus_tag="TCM_029780" /note="dbxref ricco:29900.m001551; paralog of Thecc1EG031663t1" /codon_start=1 /product="Phosphoprotein PP28, putative" /protein_id="EOY28121.1" /db_xref="TAIR:AT5G46020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5JMX3" /translation="MYASDSYNRKKEQGVPIRTLAHKKTPDGGCLGFFESARNKTKSD KPQISNLYFLFGKLSERVEKQPFVIVVDFLLSLLLTMGRGKFKAKPTGQRHFSTPEEL LAGTSSRPRTFKRQEAEYKEEEEEESGQESGEESDDETDQKRKGTQGVIEINNPNLVK PKNLKAGDVDTGKTTELSRREREELEKQRAHERYMRLQEQGKTEQARKDLERLALIRQ QREEAARKREEEKAAKEQKKAEARK" gene complement(24291467..24293256) /locus_tag="TCM_029781" /note="dbxref CacaoGD:Thecc1EG029781" mRNA complement(24291467..24293256) /locus_tag="TCM_029781" /product="UDP-Glycosyltransferase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29900.m001550" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029782t1" /inference="similar to AA sequence:ricco:29900.m001550" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7033t1" CDS complement(24291687..24293057) /locus_tag="TCM_029781" /note="dbxref ricco:29900.m001550; paralog of Thecc1EG029782t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein" /protein_id="EOY28122.1" /db_xref="TAIR:AT5G54010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9L4" /translation="MADKTFHIALYPWFALGHITAFVHIANKLAERGHKISFFLPAKT QRKVEAFNLHPDLITFIPITVPHVEGLPHGAETTNDVPFPLHPLIMTAMDLTEPDIEA SLLELKPHFVFFDFTCWLPALSRRLGIKSVLYCIVSSATIGYLLSPARKILEKGLTGH DLLEPPKGFPSSSIKLRTHEARGLAAVTTMDYGSGISFVQRQLRSLSDCDAISFKTCR EIEGPFCDYIGHQFEKTVIFAGPVVPEPPKLALEERWEKLLSSFQAKTVIFCAFGSEC VLKKDQFQELVLGLEQTGLPFLVALKPPMGAETIESALPEGFQERVQGRGLVHGGWVP QQLILRHPSVGCFVTHCGSGSLAEAMVNDCQLVLLPNVGDQIINARLMAGDLRIGVEV EKGDEDGLFKKDGVCKAVKAVMDDDSEVGKEARVNHAKWKEFLLGPGLENSYMDAFVE KLHALV" gene complement(24293399..24294968) /locus_tag="TCM_029782" /note="dbxref CacaoGD:Thecc1EG029782" mRNA complement(24293399..24294968) /locus_tag="TCM_029782" /product="UDP-Glycosyltransferase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29900.m001550.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029781t1" /inference="similar to AA sequence:ricco:29900.m001550" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(24293544..24294914) /locus_tag="TCM_029782" /note="dbxref ricco:29900.m001550; paralog of Thecc1EG029781t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein" /protein_id="EOY28123.1" /db_xref="TAIR:AT5G54010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9L4" /translation="MGEKFLHMAMYPWFAVGHITSFLHISNKLAERGHKISFFLPTKT QSKFEPFNLHPDVITFIPIKVPHIDGLPLGTETTTDIPFSLQPLLMAAMDLTEPAIEA SLRELKPHFLFFDFTFWMPALCHRLGIKSMYYCTISPATVGYLISPTRKILEKGLTGS DLMEPPLGFPSSSIKLRDHEARGLAAATTREYGSGISFVVRQLTALNECDAIGFKTCR EIEGPYCDYVEKQFEKPVILAGPVAPEPPNKTLEERWEKLLSSFQAQTVIFCAFGSEC VLNKDQFQELVLGLELTGLPFLVALKAPMGAETAESALPEGFQERVKGRGFVHGSWVP QQLILSHPSVGCFVTHCGSGSLSEAMVNDCQLVLLPHVGDQIINARLMAGDLKVGVEV EKGEEDGLFRKDDVCKAVMAMMDDDSEVGKEARANHAKWKDFLLGKGLEISYIDSFVE KLHALM" gene complement(24295133..24298886) /locus_tag="TCM_029783" /note="dbxref CacaoGD:Thecc1EG029783" mRNA complement(join(24295133..24295597,24295697..24295817, 24295914..24296144,24296448..24296636,24297179..24297289, 24297457..24297948,24298104..24298307,24298391..24298886)) /locus_tag="TCM_029783" /product="F1K23.23, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05040.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05040.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7041t2" CDS complement(join(24295485..24295597,24295697..24295817, 24295914..24296144,24296448..24296636,24297179..24297289, 24297457..24297948,24298104..24298307,24298391..24298804)) /locus_tag="TCM_029783" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="F1K23.23, putative isoform 1" /protein_id="EOY28124.1" /db_xref="Phytozome:POPTR_0004s05040.1" /db_xref="TAIR:AT1G28530.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHP4" /translation="MAFAHSVTLLSPAFPTQFPSCFPRKLPFFPTLPFRNPTVPLLIL SRSSPKPAPSTEPEALKFITDSDGITLPCVRTYENDLARLTLVGAVGFEQALTAAAAD GGRAATEHVDSGIPAMVIETVFPSSIAKNATVSTRLFLPARKVKEKAQKLRKSLSEDI LTETSSKNILAMTFRQVVIQKFWNFELVLFRPGTERDMEDLENPRKVIGSFTLSSSEE RVISNLGEVVCISALQSTERHFLDNFLGKTSSNFFQWFRKSKAIESKDLSVVIYKMFE DEIVENAKSLLESFNSSEESFKTMDLRRKDYWWTPSMHSKLDKIGGLEFSAWTSEFIP AYRLEINANTLKDLKFEGWIKSDENRWEVLLTHSQMVGLADILDLYYEDVYSLPNKQL RCGVVANYNSLSKAKRSSSFSRMVSATVASGILLITISTLSQFSFPHLHKGGKYPGGS RSPPSSIIESTTIQSVHAEKLEAFCILVIQKIKDAFGWPGDIATETDLSAWIGEMPNY LKVPHQANSSNEDDSASSADVGKIDDDIKSSVQDVASYQVILSTEGKIVGFQPTSRVG VNHWAVNPLAKELYGGRKLSPGLIERGLKIRLPNEIVVIELLMSVNPDSCFALARPIQ " mRNA complement(join(24295912..24296679,24297223..24297289, 24297457..24297951,24298104..24298307,24298391..24298855)) /locus_tag="TCM_029783" /product="Elongation factor P-like protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05040.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021140001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc608t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7041t2" mRNA complement(join(24296118..24296636,24297179..24297267, 24297457..24297951,24298104..24298307,24298391..24298855)) /locus_tag="TCM_029783" /product="Elongation factor P-like protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05040.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021140001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc618t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7041t2" mRNA complement(join(<24296118..24296144,24297179..24297289, 24297457..24297951,24298104..24298307, 24298391..>24298855)) /locus_tag="TCM_029783" /product="F1K23.23, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05040.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021140001" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc618t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7041t2" mRNA complement(join(24296118..24296636,24297179..24297289, 24297457..24297951,24298104..24298307,24298391..24298855)) /locus_tag="TCM_029783" /product="Elongation factor P-like protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s05040.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05040.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc618t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7041t2" CDS complement(join(<24296118..24296144,24297179..24297289, 24297457..24297951,24298104..24298307, 24298391..>24298855)) /locus_tag="TCM_029783" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="F1K23.23, putative isoform 5" /protein_id="EOY28128.1" /db_xref="Phytozome:GSVIVT01021140001" /db_xref="TAIR:AT1G28530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHP4" /translation="GRSKSKTLPKSSTLSPSMAFAHSVTLLSPAFPTQFPSCFPRKLP FFPTLPFRNPTVPLLILSRSSPKPAPSTEPEALKFITDSDGITLPCVRTYENDLARLT LVGAVGFEQALTAAAADGGRAATEHVDSGIPAMVIETVFPSSIAKNATVSTRLFLPAR KVKEKAQKLRKSLSEDILTETSSKNILAMTFRQVVIQKFWNFELVLFRPGTERDMEDL ENPRKQVIGSFTLSSSEERVISNLGEVVCISALQSTERHFLDNFLGKTSSNFFQWFRK SKAIESKDLSVVIYKMFEDEIVENAKSLLESFNSSEESFKTMDLRRKDYWWTPSMHSK LDKIGGLEFSAWTSEFIPAYRLEINANTLKDLKFEGWIKSDENRWEVLLTHSQMVGLA DILDLYYEDVYSLPNKQLRCGVVANYNSLSKAKLEAFCILVI" CDS complement(join(24296394..24296636,24297179..24297289, 24297457..24297951,24298104..24298307,24298391..24298804)) /locus_tag="TCM_029783" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Elongation factor P-like protein, putative isoform 2" /protein_id="EOY28125.1" /db_xref="Phytozome:POPTR_0004s05040.1" /db_xref="TAIR:AT1G28530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHP4" /translation="MAFAHSVTLLSPAFPTQFPSCFPRKLPFFPTLPFRNPTVPLLIL SRSSPKPAPSTEPEALKFITDSDGITLPCVRTYENDLARLTLVGAVGFEQALTAAAAD GGRAATEHVDSGIPAMVIETVFPSSIAKNATVSTRLFLPARKVKEKAQKLRKSLSEDI LTETSSKNILAMTFRQVVIQKFWNFELVLFRPGTERDMEDLENPRKQVIGSFTLSSSE ERVISNLGEVVCISALQSTERHFLDNFLGKTSSNFFQWFRKSKAIESKDLSVVIYKMF EDEIVENAKSLLESFNSSEESFKTMDLRRKDYWWTPSMHSKLDKIGGLEFSAWTSEFI PAYRLEINANTLKDLKFEGWIKSDENRWEVLLTHSQMVGLADILDLYYEDVYSLPNKQ LRCGVVANYNSLSKAKRSSSFSRMVSATVASGILLITISTLSQFSFPHLHKGGKYPGG SRSPPSSIIESTTIQSVHAEKVGIYCLVCICLLTTNKC" CDS complement(join(24296429..24296636,24297179..24297267, 24297457..24297951,24298104..24298307,24298391..24298804)) /locus_tag="TCM_029783" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Elongation factor P-like protein, putative isoform 3" /protein_id="EOY28126.1" /db_xref="Phytozome:GSVIVT01021140001" /db_xref="TAIR:AT1G28530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHP4" /translation="MAFAHSVTLLSPAFPTQFPSCFPRKLPFFPTLPFRNPTVPLLIL SRSSPKPAPSTEPEALKFITDSDGITLPCVRTYENDLARLTLVGAVGFEQALTAAAAD GGRAATEHVDSGIPAMVIETVFPSSIAKNATVSTRLFLPARKVKEKAQKLRKSLSEDI LTETSSKNILAMTFRQVVIQKFWNFELVLFRPGTERDMEDLENPRKQVIGSFTLSSSE ERVISNLGEVVCISALQSTERHFLDNFLGKTSSNFFQWFRKSKAIESKDLSVVIYKMF EDEIVENAKSLLESFNSSEESFKTMDLRRKDYWWTPSMHSKLDKIGGLEFSAWTSEFI PAYRLEINANTLKDLKFEGWIKSDENRWEVLLTHSQMICTMKMFTHCLTNSYAVVWLP ITTACPRQRGAPLSREWYLPPLQVEFFSLPLVLSVNLVFLIYTKEENTLEDLGLHRHQ LLSLQQFNLYTLKRWEYIA" CDS complement(join(24296429..24296679,24297223..24297289, 24297457..24297951,24298104..24298307,24298391..24298804)) /locus_tag="TCM_029783" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Elongation factor P-like protein, putative isoform 4" /protein_id="EOY28127.1" /db_xref="Phytozome:GSVIVT01021140001" /db_xref="TAIR:AT1G28530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHP4" /translation="MAFAHSVTLLSPAFPTQFPSCFPRKLPFFPTLPFRNPTVPLLIL SRSSPKPAPSTEPEALKFITDSDGITLPCVRTYENDLARLTLVGAVGFEQALTAAAAD GGRAATEHVDSGIPAMVIETVFPSSIAKNATVSTRLFLPARKVKEKAQKLRKSLSEDI LTETSSKNILAMTFRQVVIQKFWNFELVLFRPGTERDMEDLENPRKQVIGSFTLSSSE ERVISNLGEVVCISALQSTERHFLDNFLGKTSSNFFQWFRKSKAIESKDLSVVIYKMF EDEIVENAKSLLESFNSSEESFKTMDLRRKDYWWTPSMHSKLDKIGGLEFSAWTSEFI PAYRLEINANTLKDLKFEGWIKSDENRWEVLLTHSQMVGLADILDLYYEDVYSLPNKQ LLKFIGFGLLFSISYRGAPLSREWYLPPLQVEFFSLPLVLSVNLVFLIYTKEENTLED LGLHRHQLLSLQQFNLYTLKRWEYIA" gene 24299146..24300561 /locus_tag="TCM_029784" /note="dbxref CacaoGD:Thecc1EG029784" mRNA join(24299146..24299175,24299518..24299691, 24299986..24300056,24300278..>24300330) /locus_tag="TCM_029784" /product="Transcription elongation factor 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29900.m001548" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031661t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021139001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc233t9; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16715t2" mRNA join(24299167..24299175,24299569..24299691, 24299986..24300056,24300181..24300202,24300278..24300464, 24300525..24300561) /locus_tag="TCM_029784" /product="Transcription elongation factor 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29900.m001548" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031661t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021139001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16715t2" CDS join(24299579..24299691,24299986..24300056, 24300181..24300202,24300278..24300389) /locus_tag="TCM_029784" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG031661t1" /codon_start=1 /product="Transcription elongation factor 1 isoform 1" /protein_id="EOY28129.1" /db_xref="Phytozome:GSVIVT01021139001" /db_xref="TAIR:AT5G46030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LEF3" /translation="MGKRKSRAKPAPKKRMDKLDTVFSCPFCNHGTSVECRLDMKNLI GEASCRICQESFSTVITALSEPIDIYSEWIDECERVNNLEDDGDQDEGLMPRKRVSTS EWD" CDS join(24299579..24299691,24299986..24300056, 24300278..>24300330) /locus_tag="TCM_029784" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG031661t1" /codon_start=1 /product="Transcription elongation factor 1 isoform 2" /protein_id="EOY28130.1" /db_xref="Phytozome:GSVIVT01021139001" /db_xref="TAIR:AT5G46030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LEF3" /translation="MGKRKSRAKPAPKKRMDKLDTVFSCPFCNHGTSVECRLDMKNLI GEASCRICQESFSTVITDIANGLMNVSGLTTLKMM" gene complement(24300809..24305165) /locus_tag="TCM_029785" /note="dbxref CacaoGD:Thecc1EG029785" mRNA complement(join(<24300809..24300833,24301490..24301900, 24302037..24302547,24303941..24304090,24304323..24304587, 24305023..24305165)) /locus_tag="TCM_029785" /product="Vascular plant one zinc finger protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021137001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008255t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05030.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc435t4_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc435t4_C2; inference alignment:Newbler:10:TSA:cgbaL_g11826t00001" mRNA complement(join(24300809..24301900,24302037..24302547, 24303941..24304090,24304323..24304587,24304933..24305047)) /locus_tag="TCM_029785" /product="Vascular plant one zinc finger protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021137001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008255t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05030.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc435t1; alternateUTRof:Thecc1EG029785t1; inference alignment:Newbler:10:TSA:cgbaL_g11826t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc435t4_C2" CDS complement(join(<24300811..24300833,24301490..24301900, 24302037..24302547,24303941..24304090,24304323..24304550)) /locus_tag="TCM_029785" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG008255t1" /codon_start=1 /product="Vascular plant one zinc finger protein isoform 2" /protein_id="EOY28132.1" /db_xref="Phytozome:POPTR_0004s05030.1" /db_xref="TAIR:AT1G28520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGQ0" /translation="MGKGSKSNCKSASHKLFKDRAKNRVDDLQGMFLDLQFARKESRS IDVAVLEEQVHQMLREWKAELNEPSPASSLQQGGSLGSFSSDICRLLQLCEEEDDATS ALAAPKPEPNDQSLQVEDAAAFQEGYGVNQRHHERGFPLVDRCRDSPSGVRAMSINNL EGATQLEYRQFDLLQDFEHFYTGTSFCVEDAMPHTSSYLPSICPPPSAFLGPKCALWD CPRPAQGLDWCQDYCSSFHAALAMNEGPPGMGPVLRPGGIGLKDGLLFAALSAKAQGK DVGIPECEGAATAKSPWNAPELFDLSVLDGETIREWLFFDKPRRAFESGNRKQRSLPD YSGRGWHESRKQIMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKCDVCALYRLELKL VDGKKSAKGKSANDTVADLQKQMGRLTAEFPSDNKRYVKGRGVIRSRGQ" mRNA complement(join(24300912..24301900,24302037..24302547, 24303941..24304090,24304323..24304587,24305023..24305130)) /locus_tag="TCM_029785" /product="Vascular plant one zinc finger protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021137001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008255t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s05030.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11826t00001; inference alignment:Newbler:10:TSA:cgbaL_g11826t00001" CDS complement(join(24301347..24301900,24302037..24302547, 24303941..24304090,24304323..24304550)) /locus_tag="TCM_029785" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG008255t1" /codon_start=1 /product="Vascular plant one zinc finger protein isoform 1" /protein_id="EOY28131.1" /db_xref="Phytozome:POPTR_0004s05030.1" /db_xref="TAIR:AT1G28520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGQ0" /translation="MGKGSKSNCKSASHKLFKDRAKNRVDDLQGMFLDLQFARKESRS IDVAVLEEQVHQMLREWKAELNEPSPASSLQQGGSLGSFSSDICRLLQLCEEEDDATS ALAAPKPEPNDQSLQVEDAAAFQEGYGVNQRHHERGFPLVDRCRDSPSGVRAMSINNL EGATQLEYRQFDLLQDFEHFYTGTSFCVEDAMPHTSSYLPSICPPPSAFLGPKCALWD CPRPAQGLDWCQDYCSSFHAALAMNEGPPGMGPVLRPGGIGLKDGLLFAALSAKAQGK DVGIPECEGAATAKSPWNAPELFDLSVLDGETIREWLFFDKPRRAFESGNRKQRSLPD YSGRGWHESRKQIMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKCDVCALYRLELKL VDGKKSAKGKSANDTVADLQKQMGRLTAEFPSDNKRYVKGRGKINAKVGVGNLYATPN VVAPTSEKFDYGLGVQYDYLVDNLTGYYLT" CDS complement(join(24301347..24301900,24302037..24302547, 24303941..24304090,24304323..24304550)) /locus_tag="TCM_029785" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG008255t1" /codon_start=1 /product="Vascular plant one zinc finger protein isoform 1" /protein_id="EOY28133.1" /db_xref="Phytozome:POPTR_0004s05030.1" /db_xref="TAIR:AT1G28520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGQ0" /translation="MGKGSKSNCKSASHKLFKDRAKNRVDDLQGMFLDLQFARKESRS IDVAVLEEQVHQMLREWKAELNEPSPASSLQQGGSLGSFSSDICRLLQLCEEEDDATS ALAAPKPEPNDQSLQVEDAAAFQEGYGVNQRHHERGFPLVDRCRDSPSGVRAMSINNL EGATQLEYRQFDLLQDFEHFYTGTSFCVEDAMPHTSSYLPSICPPPSAFLGPKCALWD CPRPAQGLDWCQDYCSSFHAALAMNEGPPGMGPVLRPGGIGLKDGLLFAALSAKAQGK DVGIPECEGAATAKSPWNAPELFDLSVLDGETIREWLFFDKPRRAFESGNRKQRSLPD YSGRGWHESRKQIMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKCDVCALYRLELKL VDGKKSAKGKSANDTVADLQKQMGRLTAEFPSDNKRYVKGRGKINAKVGVGNLYATPN VVAPTSEKFDYGLGVQYDYLVDNLTGYYLT" mobile_element complement(24304193..24304296) /note="source:scaffold_5_CACTA_0596 6988 7086" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24304297..24304333) /note="source:CACAO_M_E43428_F369_scaffold_5 1219 1324" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24306164..24306304 /note="source:scaffold_7_CACTA_0795 2893 3038" /mobile_element_type="transposon:TIR/CACTA" gene complement(24308406..24311993) /locus_tag="TCM_029786" /note="dbxref CacaoGD:Thecc1EG029786" mRNA complement(join(24308406..24308871,24309683..24309769, 24310472..24310606,24311495..24311993)) /locus_tag="TCM_029786" /product="Optic atrophy 3 protein (OPA3)" /inference="alignment:exonerate-protein:2:frave:gene29777" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008257t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s05880.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16688t1" CDS complement(join(24308713..24308871,24309683..24309769, 24310472..24310606,24311495..24311623)) /locus_tag="TCM_029786" /note="paralog of Thecc1EG008257t1" /codon_start=1 /product="Optic atrophy 3 protein (OPA3)" /protein_id="EOY28134.1" /db_xref="Phytozome:POPTR_0011s05880.1" /db_xref="TAIR:AT1G28510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGP9" /translation="MILPLLKLGTLALKTLSKPVANRLKRQAGYHPRFRQFIVSIAQA NHRISTRMQRNIYSHATDVEIRPLDEEKAVQAAVDLIGELFVFTVAGALLILEVQRSS RSEAKKEGVRRQEMQAMKQKDEDLAKEVELLRNKLEELEQLAKRQGLSGIFKFKHANT EGEKLAKPA" gene complement(24312477..24314821) /locus_tag="TCM_029787" /note="dbxref CacaoGD:Thecc1EG029787" mRNA complement(join(24312477..24312889,24313064..24313129, 24313336..24313426,24313558..24313739,24313943..24314056, 24314210..24314323,24314470..24314549,24314634..24314821)) /locus_tag="TCM_029787" /product="Syntaxin of plants 61" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s05870.1" /inference="similar to AA sequence:Phytozome:GSVIVT01038187001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09287t00001" CDS complement(join(24312779..24312889,24313064..24313129, 24313336..24313426,24313558..24313739,24313943..24314056, 24314210..24314323,24314470..24314523)) /locus_tag="TCM_029787" /codon_start=1 /product="Syntaxin of plants 61" /protein_id="EOY28135.1" /db_xref="Phytozome:GSVIVT01038187001" /db_xref="TAIR:AT1G28490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9L0" /translation="MSKAQDPFYIVKEEIQDSIDKLQLSFHQWERIPPDTGEQVHLTK ELLANCESIEWQVDELDKTISVAARDPSWYGIDEVELEKRRRWTSTARTQVGNIKKAV VAGKENGNTAIAMRRELMRLPNSHQPDRSNQYSAEDNDDFIASESDRQMLLIKQQDEE LDELSASVERIGGVGLTIHEELLAQEKIVDELGTEMDSTTNRLDFVQKKVAMVMKKAS AKGQIMMILFLLVLFIILFILVFFT" gene 24315401..24317448 /locus_tag="TCM_029788" /note="dbxref CacaoGD:Thecc1EG029788" mRNA join(24315401..24316521,24316953..24317448) /locus_tag="TCM_029788" /product="Flavonoid o-methyltransferase related" /inference="alignment:exonerate-protein:2:frave:gene29775" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029789t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s05860.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03715t00001" CDS join(24315766..24316521,24316953..24317255) /locus_tag="TCM_029788" /note="paralog of Thecc1EG029789t1" /codon_start=1 /product="Flavonoid o-methyltransferase related" /protein_id="EOY28136.1" /db_xref="Phytozome:POPTR_0011s05860.1" /db_xref="TAIR:AT4G35160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9K9" /translation="MDQEASESFRAQAHLYKHIFNYIGSMSLKCAVQLGIPDIIHNHG GPITLSELVAALHIDPAKDSCIYRLMRLLVHSGFFATTKVDRDQEEEAYVLTPFSKIL LKDKINCLSPFVVSMLGPPMMTPWQFLGDWIQGTKQRPFESANGKAFWDYMDQDPEFK NLFHDAMESDSQMMNLVVKDCKPVFEGLSSLIDVGGGTGTVARVISEAYPQLKCTVFD LPHVVADLPASGNLNFIGGDVLQYIPPADAILLKLVLHAFGDEDCIKILKRCREAIPT QGAKGKVIIIDIVINVKKDEHELTEAKLFFDMLMMVVVTGRERTEQDWQKLFMAAGFT DYKISPLFGLRSLIEVYP" gene 24317521..24320581 /locus_tag="TCM_029789" /note="dbxref CacaoGD:Thecc1EG029789" mRNA join(24317521..24317727,24319008..24319815, 24320004..24320581) /locus_tag="TCM_029789" /product="Flavonoid o-methyltransferase related, putative" /inference="alignment:exonerate- protein:2:ricco:29900.m001543.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029790t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s05860.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2709t1" CDS join(24317696..24317727,24319008..24319815, 24320004..24320306) /locus_tag="TCM_029789" /note="paralog of Thecc1EG029790t1" /codon_start=1 /product="Flavonoid o-methyltransferase related, putative" /protein_id="EOY28137.1" /db_xref="Phytozome:POPTR_0011s05860.1" /db_xref="TAIR:AT4G35160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9K9" /translation="MRDRLEDRICSGKARLIPCNKVICRVMDQGAIESSFQAQAHLYK HMFNYIGSMSLKCAVQLGIPDIVHSHGESIALSELVSALQIHPAKTNCVYRLMRMLVH SGFFGTTKVHEHDQKEEAYVLTPSSKLLLTDKINCLSPFVLEVLDPISVNPFHFLGDW IKGDKNTAFEIAHSLSFWDYVDQNLEFKDLFHEAMARDSQMMNLVIKDYKLIFEGLSS LVDVGGGRGCIAKIISKAYPHLKCTVLDLPHVVANLPESENLNFIGGDMFQYIPSTDA ILMKHILHDWSDEDCIKILKKCREAIVRNGAGGKVIIIDVVINEKNDKHELTEAKLFI DMLMMVTVNGRERNEKDFGKLFVEAGFTHYNIMPIFGLKSIMEVYP" mobile_element complement(24317948..24318002) /note="source:INTACT415F_F22_scaffold_4-int 2187 2243" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24321781..24323385 /locus_tag="TCM_029790" /note="dbxref CacaoGD:Thecc1EG029790" mRNA join(24321781..24322518,24322659..24322675, 24322862..24323385) /locus_tag="TCM_029790" /product="Flavonoid o-methyltransferase related, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021129001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029789t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s05860.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7059t1" CDS join(24321915..24322518,24322659..24322675, 24322862..24323173) /locus_tag="TCM_029790" /note="paralog of Thecc1EG029789t1" /codon_start=1 /product="Flavonoid o-methyltransferase related, putative" /protein_id="EOY28138.1" /db_xref="Phytozome:POPTR_0011s05860.1" /db_xref="TAIR:AT4G35160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9K9" /translation="MDQGAIESSFQAQAHLYKHMFNFIGSMSLKCAVQLGIPDIIHNH GESITLSELVSALQIHPDKTSCVYRLMRLLVHSGFFGTTKVHEDDQEEEAYVLTPSSK LLITDKINCLSPFVLEVLDPASMNPLHFLRDWIKGDKNTAFEIAHGLSFWDYVDQNLE FKDLFHEPMARDSQMMNLVIKEYKPIFEGLSSLVDVGGGSGDAILIKHILHAWSDEDC IKILKKCREAIVRNGSRGKVILIDVVINEKKDKHELTKAKLLIDMLMMVMANGRERNE KDFGKLFVEAGFTDYNIMPIFGLKSIMKSIFRGK" gene 24325772..24326945 /locus_tag="TCM_029791" /note="dbxref CacaoGD:Thecc1EG029791" mRNA join(24325772..24325954,24326073..24326945) /locus_tag="TCM_029791" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021129001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031654t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021129001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7068t1" CDS join(24325787..24325954,24326073..24326618) /locus_tag="TCM_029791" /note="paralog of Thecc1EG031654t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28139.1" /db_xref="Phytozome:GSVIVT01021129001" /db_xref="TAIR:AT5G46060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C8C1" /translation="MSVRKEYLDLVLVPGGLLIMFAYHLILFYRYLHRPHTTVIGFEN NDKEAWVERIMEADKKDVSNALTVIGSNTSAATFLCSVCLTLSSLIGAWLGSSSDNIF RSNLIYGDTRPSTISIKYICLLTCFLLAFSCFVQSARNFVHANYLITTPNCEVPVESV KIAVLRGGDFWSLGLRALYFALDLLLWFFGPIPMFVSSIVMVFILHYLDTNTKPMHRY RNPTTQKKVTARSYHGSVV" gene 24333391..24340545 /locus_tag="TCM_029792" /note="dbxref CacaoGD:Thecc1EG029792" mRNA join(24333391..24334297,24334792..24334848, 24335168..24335350,24335489..24335573,24335715..24335805, 24335876..24336040,24336773..24336892,24337018..24337093, 24337793..24337952,24338032..24338972,24339531..24340545) /locus_tag="TCM_029792" /product="Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related isoform 1" /inference="alignment:exonerate- protein:2:ricco:29900.m001540" /inference="similar to AA sequence:ricco:29900.m001540" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc325t32" mRNA join(24333935..24334297,24334792..24334848, 24335168..24335350,24335489..24335574,24335715..24335805, 24335876..24336040,24336770..24336892,24337018..24337093, 24337793..24337952,24338032..24339367,24339531..24339990) /locus_tag="TCM_029792" /product="Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related isoform 2" /inference="alignment:exonerate- protein:2:ricco:29900.m001540" /inference="similar to AA sequence:ricco:29900.m001540" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7151t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc325t32" mRNA join(24333935..24334297,24334792..24334848, 24335168..24335350,24335489..24335573,24335715..24335805, 24335876..24336040,24336770..24336892,24337018..24337093, 24337793..24337952,24338032..24338972,24339531..24339990) /locus_tag="TCM_029792" /product="Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related isoform 3" /inference="alignment:exonerate- protein:2:ricco:29900.m001540" /inference="similar to AA sequence:ricco:29900.m001540" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7151t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc325t32" mRNA join(24333935..24334297,24334792..24334848, 24335168..24335350,24335489..24335573,24335715..24335805, 24335876..24336040,24336773..24336892,24337018..24337093, 24337793..24337952,24338032..24339990) /locus_tag="TCM_029792" /product="Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related isoform 4" /inference="alignment:exonerate- protein:2:ricco:29900.m001540" /inference="similar to AA sequence:ricco:29900.m001540" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7151t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc325t32" CDS join(24333980..24334297,24334792..24334848, 24335168..24335350,24335489..24335573,24335715..24335805, 24335876..24336040,24336770..24336892,24337018..24337093, 24337793..24337952,24338032..24338972,24339531..24339569) /locus_tag="TCM_029792" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29900.m001540" /codon_start=1 /product="Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related isoform 3" /protein_id="EOY28142.1" /db_xref="TAIR:AT2G33860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9K6" /translation="MGGLIDLNTTEDDETPSSGSLSPSSSSTSVLSASGISAPGSASS SSVCLELWHACAGPLISLPKRGSVVVYFPQGHLEQVSDFSGVAAAYDLPPHVFCRVVD VKLHAEAATDEVYAQVSLVPESEQTEQKLREGKIEAGGEEEDVEADIKSTTPHMFCKT LTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLHGLEWRFRHIYRGQPR RHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQIKNGTSFPSLCSQQLN RSNFADVVHAISMKSVFSIYYNPSRASSSEFIIPVHKFWKSLDHSFAVGMRFKMRFET EDAAERRYTGLVTGISDMDPVRWPGSKWRCLLVRWDDIDANRHSRVSPWEIELSGTIS SSNNLLTPGVKRNRIGLPSGKPEFMVPDGIGASDFGEPLRFQKVLQGQEILGFNTLYD GADGQNLHRSEIRRCFPGSNGSGIVAIGNVGRDPLGNSEISYRGVGFGESFRFHKVLQ GQEIYVSPPYIRGPTTNDTQENDGLGVRDAGQFSGTRSGWSSLMQSYNTHSHIRPSAP SAQVSSPSSVLMFQQASNPIPNINPIYSVNNQEKEQGVDNRSSFRAPEMYGGKLLQSS TGECSSRGRHHGTFDSFGHSNDSVQLGDSQPLAAQPTFRTSQDIASSCKSSCRLFGFS LTEGSQDANKEDNMVKATSSLGPRAFLPCIGEQFHPKPPAVTNTVGSNCTKGILQRCL KNYIY" CDS join(24333980..24334297,24334792..24334848, 24335168..24335350,24335489..24335573,24335715..24335805, 24335876..24336040,24336773..24336892,24337018..24337093, 24337793..24337952,24338032..24338972,24339531..24339569) /locus_tag="TCM_029792" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29900.m001540" /codon_start=1 /product="Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related isoform 1" /protein_id="EOY28140.1" /db_xref="TAIR:AT2G33860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9K6" /translation="MGGLIDLNTTEDDETPSSGSLSPSSSSTSVLSASGISAPGSASS SSVCLELWHACAGPLISLPKRGSVVVYFPQGHLEQVSDFSGVAAAYDLPPHVFCRVVD VKLHAEAATDEVYAQVSLVPESEQTEQKLREGKIEAGGEEEDVEADIKSTTPHMFCKT LTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLHGLEWRFRHIYRGQPR RHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQIKNGTSFPSLCSQQLN RSNFADVVHAISMKSVFSIYYNPRASSSEFIIPVHKFWKSLDHSFAVGMRFKMRFETE DAAERRYTGLVTGISDMDPVRWPGSKWRCLLVRWDDIDANRHSRVSPWEIELSGTISS SNNLLTPGVKRNRIGLPSGKPEFMVPDGIGASDFGEPLRFQKVLQGQEILGFNTLYDG ADGQNLHRSEIRRCFPGSNGSGIVAIGNVGRDPLGNSEISYRGVGFGESFRFHKVLQG QEIYVSPPYIRGPTTNDTQENDGLGVRDAGQFSGTRSGWSSLMQSYNTHSHIRPSAPS AQVSSPSSVLMFQQASNPIPNINPIYSVNNQEKEQGVDNRSSFRAPEMYGGKLLQSST GECSSRGRHHGTFDSFGHSNDSVQLGDSQPLAAQPTFRTSQDIASSCKSSCRLFGFSL TEGSQDANKEDNMVKATSSLGPRAFLPCIGEQFHPKPPAVTNTVGSNCTKGILQRCLK NYIY" CDS join(24333980..24334297,24334792..24334848, 24335168..24335350,24335489..24335573,24335715..24335805, 24335876..24336040,24336773..24336892,24337018..24337093, 24337793..24337952,24338032..24339023) /locus_tag="TCM_029792" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29900.m001540" /codon_start=1 /product="Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related isoform 4" /protein_id="EOY28143.1" /db_xref="TAIR:AT2G33860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9K6" /translation="MGGLIDLNTTEDDETPSSGSLSPSSSSTSVLSASGISAPGSASS SSVCLELWHACAGPLISLPKRGSVVVYFPQGHLEQVSDFSGVAAAYDLPPHVFCRVVD VKLHAEAATDEVYAQVSLVPESEQTEQKLREGKIEAGGEEEDVEADIKSTTPHMFCKT LTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLHGLEWRFRHIYRGQPR RHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQIKNGTSFPSLCSQQLN RSNFADVVHAISMKSVFSIYYNPRASSSEFIIPVHKFWKSLDHSFAVGMRFKMRFETE DAAERRYTGLVTGISDMDPVRWPGSKWRCLLVRWDDIDANRHSRVSPWEIELSGTISS SNNLLTPGVKRNRIGLPSGKPEFMVPDGIGASDFGEPLRFQKVLQGQEILGFNTLYDG ADGQNLHRSEIRRCFPGSNGSGIVAIGNVGRDPLGNSEISYRGVGFGESFRFHKVLQG QEIYVSPPYIRGPTTNDTQENDGLGVRDAGQFSGTRSGWSSLMQSYNTHSHIRPSAPS AQVSSPSSVLMFQQASNPIPNINPIYSVNNQEKEQGVDNRSSFRAPEMYGGKLLQSST GECSSRGRHHGTFDSFGHSNDSVQLGDSQPLAAQPTFRTSQDIASSCKSSCRLFGFSL TEGSQDANKEDNMVKATSSLGPRAFLPCIGEQFHPKPPAVTNTVGSNCTKVSNLYAVR DMLFDIAL" CDS join(24335223..24335350,24335489..24335574, 24335715..24335805,24335876..24336040,24336770..24336892, 24337018..24337093,24337793..24337952,24338032..24339023) /locus_tag="TCM_029792" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29900.m001540" /codon_start=1 /product="Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related isoform 2" /protein_id="EOY28141.1" /db_xref="TAIR:AT2G33860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9K6" /translation="MSKQISSQRRPTCSARPLRLLIPVHMEASLFRVELLRTASRPWI IISRGPHKSLLQKTFMAWNGGFDTFIGGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR GEDGELRLGIRRAAQIKNGTSFPSLCSQQLNRSNFADVVHAISMKSVFSIYYNPSRAS SSEFIIPVHKFWKSLDHSFAVGMRFKMRFETEDAAERRYTGLVTGISDMDPVRWPGSK WRCLLVRWDDIDANRHSRVSPWEIELSGTISSSNNLLTPGVKRNRIGLPSGKPEFMVP DGIGASDFGEPLRFQKVLQGQEILGFNTLYDGADGQNLHRSEIRRCFPGSNGSGIVAI GNVGRDPLGNSEISYRGVGFGESFRFHKVLQGQEIYVSPPYIRGPTTNDTQENDGLGV RDAGQFSGTRSGWSSLMQSYNTHSHIRPSAPSAQVSSPSSVLMFQQASNPIPNINPIY SVNNQEKEQGVDNRSSFRAPEMYGGKLLQSSTGECSSRGRHHGTFDSFGHSNDSVQLG DSQPLAAQPTFRTSQDIASSCKSSCRLFGFSLTEGSQDANKEDNMVKATSSLGPRAFL PCIGEQFHPKPPAVTNTVGSNCTKVSNLYAVRDMLFDIAL" mRNA join(<24335545..24335573,24335715..24335805, 24335876..24336040,24336773..24336892,24337018..24337093, 24337793..24337952,24338032..24340055) /locus_tag="TCM_029792" /product="Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related isoform 6" /inference="alignment:exonerate- protein:2:ricco:29900.m001540" /inference="similar to AA sequence:ricco:29900.m001540" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc514t11; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc325t32" mRNA join(<24335545..24335573,24335715..24335805, 24335876..24336040,24336773..24336892,24337018..24337093, 24337793..24337952,24338032..24338972,24339531..24340055) /locus_tag="TCM_029792" /product="Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related isoform 5" /inference="alignment:exonerate- protein:2:ricco:29900.m001540" /inference="similar to AA sequence:ricco:29900.m001540" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc514t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc325t32" CDS join(<24335546..24335573,24335715..24335805, 24335876..24336040,24336773..24336892,24337018..24337093, 24337793..24337952,24338032..24338972,24339531..24339569) /locus_tag="TCM_029792" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29900.m001540" /codon_start=1 /product="Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related isoform 5" /protein_id="EOY28144.1" /db_xref="TAIR:AT2G33860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9K6" /translation="EWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDG ELRLGIRRAAQIKNGTSFPSLCSQQLNRSNFADVVHAISMKSVFSIYYNPRASSSEFI IPVHKFWKSLDHSFAVGMRFKMRFETEDAAERRYTGLVTGISDMDPVRWPGSKWRCLL VRWDDIDANRHSRVSPWEIELSGTISSSNNLLTPGVKRNRIGLPSGKPEFMVPDGIGA SDFGEPLRFQKVLQGQEILGFNTLYDGADGQNLHRSEIRRCFPGSNGSGIVAIGNVGR DPLGNSEISYRGVGFGESFRFHKVLQGQEIYVSPPYIRGPTTNDTQENDGLGVRDAGQ FSGTRSGWSSLMQSYNTHSHIRPSAPSAQVSSPSSVLMFQQASNPIPNINPIYSVNNQ EKEQGVDNRSSFRAPEMYGGKLLQSSTGECSSRGRHHGTFDSFGHSNDSVQLGDSQPL AAQPTFRTSQDIASSCKSSCRLFGFSLTEGSQDANKEDNMVKATSSLGPRAFLPCIGE QFHPKPPAVTNTVGSNCTKGILQRCLKNYIY" CDS join(<24335546..24335573,24335715..24335805, 24335876..24336040,24336773..24336892,24337018..24337093, 24337793..24337952,24338032..24339023) /locus_tag="TCM_029792" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29900.m001540" /codon_start=1 /product="Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related isoform 6" /protein_id="EOY28145.1" /db_xref="TAIR:AT2G33860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9K6" /translation="EWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDG ELRLGIRRAAQIKNGTSFPSLCSQQLNRSNFADVVHAISMKSVFSIYYNPRASSSEFI IPVHKFWKSLDHSFAVGMRFKMRFETEDAAERRYTGLVTGISDMDPVRWPGSKWRCLL VRWDDIDANRHSRVSPWEIELSGTISSSNNLLTPGVKRNRIGLPSGKPEFMVPDGIGA SDFGEPLRFQKVLQGQEILGFNTLYDGADGQNLHRSEIRRCFPGSNGSGIVAIGNVGR DPLGNSEISYRGVGFGESFRFHKVLQGQEIYVSPPYIRGPTTNDTQENDGLGVRDAGQ FSGTRSGWSSLMQSYNTHSHIRPSAPSAQVSSPSSVLMFQQASNPIPNINPIYSVNNQ EKEQGVDNRSSFRAPEMYGGKLLQSSTGECSSRGRHHGTFDSFGHSNDSVQLGDSQPL AAQPTFRTSQDIASSCKSSCRLFGFSLTEGSQDANKEDNMVKATSSLGPRAFLPCIGE QFHPKPPAVTNTVGSNCTKVSNLYAVRDMLFDIAL" gene 24340040..24347107 /locus_tag="TCM_029793" /note="dbxref CacaoGD:Thecc1EG029793" mRNA join(24340040..24340595,24341865..24342054, 24342173..24342230,24342320..24342471,24343695..24343811, 24344138..24344198,24345204..24345292,24345394..24345468, 24345572..24345660,24345760..24345809,24345891..24345931, 24346025..24346198,24346319..24346354,24346428..24346556, 24346639..24347107) /locus_tag="TCM_029793" /product="Seven transmembrane MLO family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021126001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008249t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021126001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7081t1" CDS join(24341920..24342054,24342173..24342230, 24342320..24342471,24343695..24343811,24344138..24344198, 24345204..24345292,24345394..24345468,24345572..24345660, 24345760..24345809,24345891..24345931,24346025..24346198, 24346319..24346354,24346428..24346556,24346639..24346992) /locus_tag="TCM_029793" /note="paralog of Thecc1EG008249t1" /codon_start=1 /product="Seven transmembrane MLO family protein" /protein_id="EOY28146.1" /db_xref="Phytozome:GSVIVT01021126001" /db_xref="TAIR:AT1G61560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9K5" /translation="MAGEEATTSSGTTLERTPTWAVATVVFVLILISIFIEHMLHLLA KYFNKKRRKSLIQALDKIKSELMLLGFISLLLTVAEKQIANICIPKNVGESFLPCGDY SNDSEEEAKCEEQGKVSLLSRQGVRELQYLIFVLAFFHCLSSVLTFSLGMAKMRRWES WEAETRTLEYQFSNDPRRFQLIHQTSFARRHLRFWSEHRFLRWPACFLRQFYASVSKV DYFTLRHGFITAHFAEGSNFDFQKYIKRALEKDFGVVVEISLWIWIFSMFFIFFNAHG FYNYLWLPFIPLLMLLLVGTQLQGIITKMCLDSHEKSQVVRGTFLVRPSDHFFWFGWP KLLLHIMHFILFQNSFQLAFFTWTWYKFGFRSCFHRKTEDIVIRVAMGVLVQILCGYV TLPLYALVTQMGTSMKKAVFPETVVEGLNRWRANARKNVAVRNNTSPWPSLETSPSFG TSPSFSPDASYSVKYEQPISNSDQYLPVEIQEIQDEGKESISRETEEHQKGASFGGFD VRNVNNEKHDY" mobile_element 24342537..24343661 /note="source:INTACT639F_F363_scaffold_5-int 7469 8545" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24345535..24346108) /note="source:CACAO_Again_on_S_E31_scaffold_1 4174 4797" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24348653..24348738) /note="source:INTACT433_F212_scaffold_1-int 3052 3136" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24350630..24350826) /note="source:scaffold_9_CACTA_0946 17848 18044" /mobile_element_type="transposon:TIR/CACTA" gene 24351365..24352361 /locus_tag="TCM_029795" /note="dbxref CacaoGD:Thecc1EG029795" mRNA 24351365..24352361 /locus_tag="TCM_029795" /product="Thioredoxin superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30190.m010765" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008240t1" /inference="similar to AA sequence:ricco:30190.m010765" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7078t1" CDS 24351407..24351952 /locus_tag="TCM_029795" /note="dbxref ricco:30190.m010765; paralog of Thecc1EG008240t1" /codon_start=1 /product="Thioredoxin superfamily protein" /protein_id="EOY28147.1" /db_xref="TAIR:AT1G28480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2P7" /translation="MTHIIIPPSPSTYSKPLFTICNLLNHIYVTVYSMQEAISYKSHM AATANGSSSPLRNSLGGSNSSGGLVANGTENSVTKLVLENAVIVFGRQGCCMCHVVKR LLLGHGVNPAVCEVDEEKEEAVLTELSRINGERGGERGGVQFPAVFVGGKLFGGLDRV MSTHISGELVPILKDAGALWL" mobile_element 24353594..24354256 /note="source:CACAO_PIF_E144_scaffold_10 1199 2087" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(24354257..24354655) /note="source:scaffold_6_CACTA_0709 3496 3918" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24354656..24354876 /note="source:CACAO_PIF_E144_scaffold_10 2088 2386" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 24356681..24360207 /locus_tag="TCM_029796" /note="dbxref CacaoGD:Thecc1EG029796" mRNA join(24356681..24356754,24357203..24357632, 24358299..24358398,24358737..24358894,24359003..24359289, 24359623..24360207) /locus_tag="TCM_029796" /product="NAC domain containing protein 25" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s05760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022126t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04920.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS join(24358367..24358398,24358737..24358894, 24359003..24359289,24359623..24360108) /locus_tag="TCM_029796" /note="paralog of Thecc1EG022126t1" /codon_start=1 /product="NAC domain containing protein 25" /protein_id="EOY28148.1" /db_xref="Phytozome:POPTR_0004s04920.1" /db_xref="TAIR:AT1G69490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2P9" /translation="MFSTLQKQIARPSASLPPGFRFHPTDEELIIHYLKQKASPSSNP PILIIADVNIYKFNPWELPDKAFFGENEWFFFSPRDKKYPNGTRPNRAAASGYWKATG TDKPIISSVGSQCLGMKKALVFYKGHPPKGVKTDWMMTEYMLLDDYFSSQRPKGSMRL DDWVLCRVRQKSKVPQQLGGRNYSGSSCSPPFSRGYLQGQEMTIENANILHGHHQLPA QYQMSPLESEELDEKGQIMDLQEGSPEYSLSNSPKTIDSNVRNVLKSIERELSVGALD ELLPSQPDKRLKVSASDNSPANASVFQISFPAPSASYQQHFSEF" gene 24360871..24368446 /locus_tag="TCM_029797" /note="dbxref CacaoGD:Thecc1EG029797" mRNA join(24360871..24361376,24362100..24362261, 24362346..24362411,24362527..24362670,24362824..24362937, 24363190..24363291,24363453..24363638,24363793..24363882, 24363958..24364092,24364194..24364316,24364621..24364706, 24364818..24365430,24365551..24365628,24365856..24366937, 24367121..24367719,24368148..24368446) /locus_tag="TCM_029797" /product="Guanylate-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04910.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04910.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc201t4" mRNA join(24360915..24361376,24362100..24362261, 24362346..24362411,24362527..24362670,24362824..24362937, 24363190..24363291,24363453..24363638,24363793..24363882, 24363958..24364092,24364194..24364316,24364621..24364706, 24364818..24365430,24365551..24365628,24365856..24367377) /locus_tag="TCM_029797" /product="Guanylate-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04910.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04910.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7133t3; alternateUTRof:Thecc1EG029797t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc201t4" CDS join(24361113..24361376,24362100..24362261, 24362346..24362411,24362527..24362670,24362824..24362937, 24363190..24363291,24363453..24363638,24363793..24363882, 24363958..24364092,24364194..24364316,24364621..24364706, 24364818..24365430,24365551..24365628,24365856..24366899) /locus_tag="TCM_029797" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Guanylate-binding family protein isoform 1" /protein_id="EOY28149.1" /db_xref="Phytozome:POPTR_0004s04910.1" /db_xref="TAIR:AT5G46070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KG14" /translation="MMKLFGRGKESSPDVSPQSFGHSASPSTSLESPVTGPARPIRLL YCDEKGKFRMDPEAVAALQLVKGPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTH RPCTKGLWLWSAPLKRTALDGTEYNLLLLDTEGIDAYDQTGTYSTQIFSLAVLLSSMF VYNQMGGIDEAALDRLSLVTQMTKHIRVKAGGRITTASELGQFSPIFVWLLRDFYLDL VEDNRKITPRDYLELALRPVQGSGKDIAAKNEIRDSIRALFPDRECFTLVRPLNNEND LQRLHQISLDRLRPEFRAGLDAFTKFVFERTRPKQVGATVMTGPVLIGITESYLDALN NGAVPTISSSWQSVEEAECRRAYDSAAEFYMSTFDRTKPPEEVALREAHEEAVQKSLA IYNASAVGVGSMRKKYEELLQKFFRKAFEDYKRNAYMEADSRCSNAIQSMGKRLRAAC HASDASIDNVVKVLDALLSEYEASCHGPGKWQKLAVFLQQSMEVPVLDFTKRLVDQIG SEKSSLALKCRSIEDKMKLLNKQLEDSEKYKSEYLKRYDDAINDKKKLADEYASRMNN LQGDNSSLKERCSSLMKALDSAKQEILDSRRKHDQVLSKQKAKDDQTTSEMEVLKSRS TAAEARLAAARERAESAQEEAEEWKRKYDFAVREAKAALEKAANVQERTGKETQLRED ALREEFSHTLAEKDEELKDKSAKIEHAEQCLTTIKLELKAAESKIKSYDAEISSLKVE IRELADKLENANTKAQSFEREARILEQEKIHLEQKYSSEFRRFAEVEERCRLAEKEAK KATELADKARAESVAAQKEKSEIQRMAMERLAQIERAERQIENLERQKTDLGDELHRV QVSEMDAVSKVVLLEARVEEREKEIESLLKTNNEQRTSTVKVLQDLLDSERAAHADAN DRAEALSLQLQAAQAKLDLLQQELTSVRLNETALDSKLKTASRGKRLRGDDFEMGVGS VQEMDTSDRILRANKKSRSTTSPLRYSQSEDGGSVYKGDEDNPNQQNNQEDYTKFTVQ KLKQELTKHNFGGELLALRNPNKKDILSLYEKCVLQKS" CDS join(24361113..24361376,24362100..24362261, 24362346..24362411,24362527..24362670,24362824..24362937, 24363190..24363291,24363453..24363638,24363793..24363882, 24363958..24364092,24364194..24364316,24364621..24364706, 24364818..24365430,24365551..24365628,24365856..24366899) /locus_tag="TCM_029797" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Guanylate-binding family protein isoform 1" /protein_id="EOY28150.1" /db_xref="Phytozome:POPTR_0004s04910.1" /db_xref="TAIR:AT5G46070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KG14" /translation="MMKLFGRGKESSPDVSPQSFGHSASPSTSLESPVTGPARPIRLL YCDEKGKFRMDPEAVAALQLVKGPIGVVSVCGRARQGKSFILNQLLGRSSGFQVASTH RPCTKGLWLWSAPLKRTALDGTEYNLLLLDTEGIDAYDQTGTYSTQIFSLAVLLSSMF VYNQMGGIDEAALDRLSLVTQMTKHIRVKAGGRITTASELGQFSPIFVWLLRDFYLDL VEDNRKITPRDYLELALRPVQGSGKDIAAKNEIRDSIRALFPDRECFTLVRPLNNEND LQRLHQISLDRLRPEFRAGLDAFTKFVFERTRPKQVGATVMTGPVLIGITESYLDALN NGAVPTISSSWQSVEEAECRRAYDSAAEFYMSTFDRTKPPEEVALREAHEEAVQKSLA IYNASAVGVGSMRKKYEELLQKFFRKAFEDYKRNAYMEADSRCSNAIQSMGKRLRAAC HASDASIDNVVKVLDALLSEYEASCHGPGKWQKLAVFLQQSMEVPVLDFTKRLVDQIG SEKSSLALKCRSIEDKMKLLNKQLEDSEKYKSEYLKRYDDAINDKKKLADEYASRMNN LQGDNSSLKERCSSLMKALDSAKQEILDSRRKHDQVLSKQKAKDDQTTSEMEVLKSRS TAAEARLAAARERAESAQEEAEEWKRKYDFAVREAKAALEKAANVQERTGKETQLRED ALREEFSHTLAEKDEELKDKSAKIEHAEQCLTTIKLELKAAESKIKSYDAEISSLKVE IRELADKLENANTKAQSFEREARILEQEKIHLEQKYSSEFRRFAEVEERCRLAEKEAK KATELADKARAESVAAQKEKSEIQRMAMERLAQIERAERQIENLERQKTDLGDELHRV QVSEMDAVSKVVLLEARVEEREKEIESLLKTNNEQRTSTVKVLQDLLDSERAAHADAN DRAEALSLQLQAAQAKLDLLQQELTSVRLNETALDSKLKTASRGKRLRGDDFEMGVGS VQEMDTSDRILRANKKSRSTTSPLRYSQSEDGGSVYKGDEDNPNQQNNQEDYTKFTVQ KLKQELTKHNFGGELLALRNPNKKDILSLYEKCVLQKS" mRNA join(24362646..24362670,24362824..24362937, 24363190..24363291,24363453..24363638,24363793..24363882, 24363958..24364092,24364194..24364316,24364621..24364706, 24364818..24365430,24365551..24365628,24365856..24367042, 24367121..24367651) /locus_tag="TCM_029797" /product="Guanylate-binding protein 3 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04910.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04910.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc169t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc201t4" CDS join(24363549..24363638,24363793..24363882, 24363958..24364092,24364194..24364316,24364621..24364706, 24364818..24365430,24365551..24365628,24365856..24366899) /locus_tag="TCM_029797" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Guanylate-binding protein 3 isoform 3" /protein_id="EOY28151.1" /db_xref="Phytozome:POPTR_0004s04910.1" /db_xref="TAIR:AT5G46070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KG14" /translation="MTGPVLIGITESYLDALNNGAVPTISSSWQSVEEAECRRAYDSA AEFYMSTFDRTKPPEEVALREAHEEAVQKSLAIYNASAVGVGSMRKKYEELLQKFFRK AFEDYKRNAYMEADSRCSNAIQSMGKRLRAACHASDASIDNVVKVLDALLSEYEASCH GPGKWQKLAVFLQQSMEVPVLDFTKRLVDQIGSEKSSLALKCRSIEDKMKLLNKQLED SEKYKSEYLKRYDDAINDKKKLADEYASRMNNLQGDNSSLKERCSSLMKALDSAKQEI LDSRRKHDQVLSKQKAKDDQTTSEMEVLKSRSTAAEARLAAARERAESAQEEAEEWKR KYDFAVREAKAALEKAANVQERTGKETQLREDALREEFSHTLAEKDEELKDKSAKIEH AEQCLTTIKLELKAAESKIKSYDAEISSLKVEIRELADKLENANTKAQSFEREARILE QEKIHLEQKYSSEFRRFAEVEERCRLAEKEAKKATELADKARAESVAAQKEKSEIQRM AMERLAQIERAERQIENLERQKTDLGDELHRVQVSEMDAVSKVVLLEARVEEREKEIE SLLKTNNEQRTSTVKVLQDLLDSERAAHADANDRAEALSLQLQAAQAKLDLLQQELTS VRLNETALDSKLKTASRGKRLRGDDFEMGVGSVQEMDTSDRILRANKKSRSTTSPLRY SQSEDGGSVYKGDEDNPNQQNNQEDYTKFTVQKLKQELTKHNFGGELLALRNPNKKDI LSLYEKCVLQKS" gene complement(24368831..24371307) /locus_tag="TCM_029798" /note="dbxref CacaoGD:Thecc1EG029798" mRNA complement(join(24368831..24369785,24370449..24370638, 24370734..24370983,24371104..24371307)) /locus_tag="TCM_029798" /product="NAC domain containing protein 73" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400054964" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008229t1" /inference="similar to AA sequence:ricco:30190.m010767" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7357t1" CDS complement(join(24369193..24369785,24370449..24370638, 24370734..24370892)) /locus_tag="TCM_029798" /note="dbxref ricco:30190.m010767; paralog of Thecc1EG008229t1" /codon_start=1 /product="NAC domain containing protein 73" /protein_id="EOY28152.1" /db_xref="TAIR:AT4G28500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2D6W9" /translation="MTWCNNSDDDRALQLVTAADSTKEPASVSDTKTDDIRIIICPSC GHNIPYQDQAGIHDLPGLPAGVKFDPTDQEILEHLEAKVISDMRKLHPLIDEFIPTLE GENGICYTHPERLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEDGSETRWHKTG KTRPVLVGGAVKGFKKILVLYTNYGRQRKPEKTNWVMHQYHLGNNEEEKDGELVASKV FYQTQPRQCGPSSVKDTLDRKLKNRSRHDKSPIAKSSSTAFVHEYFNPPFIPFDHGSH NRESPPPLIPNLVVQGDGSSFIRLASDTSKGRLERKL" gene complement(24376202..24377908) /locus_tag="TCM_029799" /note="dbxref CacaoGD:Thecc1EG029799" mRNA complement(24376202..24377908) /locus_tag="TCM_029799" /product="Serine/threonine-protein kinase-like protein ACR4" /inference="alignment:exonerate- protein:2:ricco:30190.m011308" /inference="similar to AA sequence:ricco:30190.m011308" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1811t1" CDS complement(24376788..24377795) /locus_tag="TCM_029799" /note="dbxref ricco:30190.m011308" /codon_start=1 /product="Serine/threonine-protein kinase-like protein ACR4" /protein_id="EOY28153.1" /db_xref="TAIR:AT5G46080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNL4" /translation="MSRGEEIAYDLVLVLLSISLFVLGIFLIIICRKKPVKSDQKQEL PVKVCASAYQLTDIDAATDGFNHRRIIGKGRLGTVYAAISPRAELVAVKRIHPRLVLS NAGFGFASIIRTLSLAQHPHIVPVIGFSQAPGERIIVMEFVGMVNLNFYLHENSDGAS LLDWNRRLRVAAGVARGLEYLHEGMAPNIIHGCIKASNILLDVKFVAKLCGYGLSFLA PQEKRGLVGYVDDEYWVERGGGACKESDVYGFGVVLLELLTGRRSEEGLLVRWALPLI KEKKLSELLDPRLVIPSDIKPLVRLAKVASTCVGNYRKDRPCISQVATILNNLEIEAC H" gene complement(24380810..24389083) /locus_tag="TCM_029800" /note="dbxref CacaoGD:Thecc1EG029800" mRNA complement(join(24380810..24381642,24382075..24384904)) /locus_tag="TCM_029800" /product="HAESA-like 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008226t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04880.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7415t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc130t22" mRNA complement(join(24380969..24381639,24382075..24385239, 24388494..24389083)) /locus_tag="TCM_029800" /product="HAESA-like 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008226t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04880.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc130t22" CDS complement(join(24381245..24381639,24382075..24384670)) /locus_tag="TCM_029800" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG008226t1" /codon_start=1 /product="HAESA-like 1 isoform 1" /protein_id="EOY28154.1" /db_xref="Phytozome:POPTR_0004s04880.1" /db_xref="TAIR:AT1G28440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P47735" /translation="MLLLVLSFLFFTFPPPSLSLNQEGLYLLQVKASLADPDSALSSW NSRDPTPCNWRGVSCDSATGSVTSLNLSSTNLAGPFPSLLCRLQNLTSVSLYYNNINS TIPSDISTCQNLIHLDLSQNLLTGELPHTLADLPNLKYLDLTGNNLSGDIPVSFGRFQ RLEVLSLVYNLLDGTIPAFLGNISTLKMLNLSYNPFSPGRIPPELGNLTNLEILWLTE CNLVGEIPDSVGRLKKLTDLDLAINHLVGKIPSSLTELTSVVQIELYNNSLTGELPRR FSNLTKLRLLDASMNELTGTIPDELTQLPLESLNLYQNNFEGALPPSIADSPALYELR IFQNRLTGELPQNLGKNSPLRWLDVSNNQFTGLIPPSLCEKGNLEEILMIYNSFSGQL PSSLAECRSLNRIRLGYNKLSGEIPAGFWGLPHVYLLELVNNSFSGQIGKSIANAANL SLLVISRNEFTGSLPEEIGSVDNLVQISAGENKFSGPLPKSIVNLDGLGILNLHGNEL EGELPTGIESLKKLNELNLANNKFSGKIPDGIGSLSVLNYLDLSNNQLTGRIPLGLQN LKLNQLNLSNNLLSGELPPLFDKEMYKNSFLGNPGLCGNFSDLCAGRDGDKHKGYVWL LRSIFVLAALVFVVGVVWFYLKYRSYKKARAIDKSKWTLMSFHKLGFSEYEILDCLDE DNVIGRGSSGKVYKVVLSNGEAVAVKKLWGGAKKGCESVDLEKGQAQVQDDGFEAEVE TLGKIRHKNIVKLWCCCTTRDCKLLVYEYMQNGSLGDLLHSSKGGLLDWPTRYKIIVD AAEGLSYLHHDCVPAIVHRDVKSNNILLDGDFGARVADFGVAKVVDAAGRGAKSMSVI AGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRLPIDPEYGEKDLVKWVCTTLD QKGVDHVLDSKLDPCFKEEICKVLNIGLLCTSPLPINRPSMRRVVKMLQEAGAESHPK AAAKKDGKLTPYYYEDASDQGSVA" CDS complement(join(24381245..24381642,24382075..24384670)) /locus_tag="TCM_029800" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG008226t1" /codon_start=1 /product="HAESA-like 1 isoform 2" /protein_id="EOY28155.1" /db_xref="Phytozome:POPTR_0004s04880.1" /db_xref="TAIR:AT1G28440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P47735" /translation="MLLLVLSFLFFTFPPPSLSLNQEGLYLLQVKASLADPDSALSSW NSRDPTPCNWRGVSCDSATGSVTSLNLSSTNLAGPFPSLLCRLQNLTSVSLYYNNINS TIPSDISTCQNLIHLDLSQNLLTGELPHTLADLPNLKYLDLTGNNLSGDIPVSFGRFQ RLEVLSLVYNLLDGTIPAFLGNISTLKMLNLSYNPFSPGRIPPELGNLTNLEILWLTE CNLVGEIPDSVGRLKKLTDLDLAINHLVGKIPSSLTELTSVVQIELYNNSLTGELPRR FSNLTKLRLLDASMNELTGTIPDELTQLPLESLNLYQNNFEGALPPSIADSPALYELR IFQNRLTGELPQNLGKNSPLRWLDVSNNQFTGLIPPSLCEKGNLEEILMIYNSFSGQL PSSLAECRSLNRIRLGYNKLSGEIPAGFWGLPHVYLLELVNNSFSGQIGKSIANAANL SLLVISRNEFTGSLPEEIGSVDNLVQISAGENKFSGPLPKSIVNLDGLGILNLHGNEL EGELPTGIESLKKLNELNLANNKFSGKIPDGIGSLSVLNYLDLSNNQLTGRIPLGLQN LKLNQLNLSNNLLSGELPPLFDKEMYKNSFLGNPGLCGNFSDLCAGRDGDKHKGYVWL LRSIFVLAALVFVVGVVWFYLKYRSYKKARAIDKSKWTLMSFHKLGFSEYEILDCLDE DNVIGRGSSGKVYKVVLSNGEAVAVKKLWGGAKKGCESVDLEKGQAQVQDDGFEAEVE TLGKIRHKNIVKLWCCCTTRDCKLLVYEYMQNGSLGDLLHSSKGGLLDWPTRYKIIVD AAEGLSYLHHDCVPAIVHRDVKSNNILLDGDFGARVADFGVAKVVDAAGRGAKSMSVI AGSCGYIAPAEYAYTLRVNEKSDIYSFGVVILELVTGRLPIDPEYGEKDLVKWVCTTL DQKGVDHVLDSKLDPCFKEEICKVLNIGLLCTSPLPINRPSMRRVVKMLQEAGAESHP KAAAKKDGKLTPYYYEDASDQGSVA" gene complement(24392195..24394108) /locus_tag="TCM_029801" /note="dbxref CacaoGD:Thecc1EG029801" mRNA complement(join(24392195..24393024,24393709..24394108)) /locus_tag="TCM_029801" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.24 coverage" CDS complement(join(24392817..24393024,24393709..24393800)) /locus_tag="TCM_029801" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28156.1" /translation="MFYSTTRFSFSVTPIMRERERERGESLKGCRQHSHQKQYKTRNK KRGKKLYILIMFRNARHEISKFHLSSYPFVDASSLLFCHAFYYKTPKPRVRATQI" gene complement(24397317..24401263) /locus_tag="TCM_029802" /note="dbxref CacaoGD:Thecc1EG029802" mRNA complement(join(24397317..24398572,24399130..24400694, 24401067..24401103)) /locus_tag="TCM_029802" /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011280001" /inference="similar to AA sequence:Phytozome:GSVIVT01011280001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7102t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7102t4; inference alignment:Newbler:10:TSA:cgbaB_g02252t00001" mRNA complement(join(24397553..24398572,24399142..24400694, 24401067..24401097)) /locus_tag="TCM_029802" /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011280001" /inference="similar to AA sequence:Phytozome:GSVIVT01011280001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7102t4" gene 24397884..24398652 /locus_tag="TCM_029803" /note="dbxref CacaoGD:Thecc1EG029803" mRNA 24397884..24398652 /locus_tag="TCM_029803" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011282001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008223t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s05700.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02252t00002" CDS 24397948..24398583 /locus_tag="TCM_029803" /note="paralog of Thecc1EG008223t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28160.1" /db_xref="Phytozome:POPTR_0011s05700.1" /db_xref="TAIR:AT4G18425.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2Q4" /translation="MEIMIQGEESPEHGEQKVPLLQSLTVSETEKKNPVQKAISQTFQ STAHLANLLPTGTVLAFQLLSPIFTNQGNCDSVSRSMTAGLILLCGLSCFLMSFTDSF RDKNGTVCYGFATFYGLWVIDGSITLPPELAAKYRLHFIDFMHAFMSILVFAAVALFD HNVVSCFYPTPSDQAQEILTALPVGIGVLCSMLFVVFPTTRHGIGFPLSAN" CDS complement(join(24398550..24398572,24399142..24400597)) /locus_tag="TCM_029802" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 1" /protein_id="EOY28157.1" /db_xref="Phytozome:GSVIVT01011280001" /db_xref="TAIR:AT5G46100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNL2" /translation="MMGTKVAFKWSKKITPSQVVHLIKAEKNIDEALAIFDSATAEYT NGFRHDHSTFGVMISRLVSANKFGPAEDLLDRMKVEKCDIREDIFLFICRGYGRVHRP LDAIRVFDKMKEFPLEPSQRSYITVFDILVEENQLKIALRFYRHMREVGIPASVASLN ILIKALCKNSGTMDSALHIFREMPNRGCPPDSYTYGTLINGLCRFGKITEAKELFQEM KTRDCSPSVVTYSSLIHGLCQSKNMNEAMGLLEEMKSNSIKPNVFTYSSLMDGLCKDG RSSEAMELLETMVSKCCRPNTITYSTLIHGLCKEGKLQEAVEILDRMKLQGLQPDAGL YGKVISGFCDVDKFKEAANFLDEMVLGRTSPNRLTWSLHVRIYNMVVRGLCTKSDLSR AFLLYLSMRTRGISVEAGTFEALMKSFCKKGDLQKAARIVDEMLIDGCIPEEGAWGTL VSAFWDQRMVQETVELFEFELMGDFTEPDLEIQAEDRGKPIP" mRNA complement(join(24398873..24398897,24399130..24400694, 24401067..24401263)) /locus_tag="TCM_029802" /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011280001" /inference="similar to AA sequence:Phytozome:GSVIVT01011280001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1172t3; alternateUTRof:Thecc1EG029802t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7102t4; inference alignment:Newbler:10:TSA:cgbaB_g02252t00001" CDS complement(24399134..24400597) /locus_tag="TCM_029802" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 2" /protein_id="EOY28158.1" /db_xref="Phytozome:GSVIVT01011280001" /db_xref="TAIR:AT5G46100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNL2" /translation="MMGTKVAFKWSKKITPSQVVHLIKAEKNIDEALAIFDSATAEYT NGFRHDHSTFGVMISRLVSANKFGPAEDLLDRMKVEKCDIREDIFLFICRGYGRVHRP LDAIRVFDKMKEFPLEPSQRSYITVFDILVEENQLKIALRFYRHMREVGIPASVASLN ILIKALCKNSGTMDSALHIFREMPNRGCPPDSYTYGTLINGLCRFGKITEAKELFQEM KTRDCSPSVVTYSSLIHGLCQSKNMNEAMGLLEEMKSNSIKPNVFTYSSLMDGLCKDG RSSEAMELLETMVSKCCRPNTITYSTLIHGLCKEGKLQEAVEILDRMKLQGLQPDAGL YGKVISGFCDVDKFKEAANFLDEMVLGRTSPNRLTWSLHVRIYNMVVRGLCTKSDLSR AFLLYLSMRTRGISVEAGTFEALMKSFCKKGDLQKAARIVDEMLIDGCIPEEGAWGTL VSAFWDQRMVQETVELFEFELMGDFTEPDLEIQAEGL" CDS complement(24399134..24400597) /locus_tag="TCM_029802" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 2" /protein_id="EOY28159.1" /db_xref="Phytozome:GSVIVT01011280001" /db_xref="TAIR:AT5G46100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNL2" /translation="MMGTKVAFKWSKKITPSQVVHLIKAEKNIDEALAIFDSATAEYT NGFRHDHSTFGVMISRLVSANKFGPAEDLLDRMKVEKCDIREDIFLFICRGYGRVHRP LDAIRVFDKMKEFPLEPSQRSYITVFDILVEENQLKIALRFYRHMREVGIPASVASLN ILIKALCKNSGTMDSALHIFREMPNRGCPPDSYTYGTLINGLCRFGKITEAKELFQEM KTRDCSPSVVTYSSLIHGLCQSKNMNEAMGLLEEMKSNSIKPNVFTYSSLMDGLCKDG RSSEAMELLETMVSKCCRPNTITYSTLIHGLCKEGKLQEAVEILDRMKLQGLQPDAGL YGKVISGFCDVDKFKEAANFLDEMVLGRTSPNRLTWSLHVRIYNMVVRGLCTKSDLSR AFLLYLSMRTRGISVEAGTFEALMKSFCKKGDLQKAARIVDEMLIDGCIPEEGAWGTL VSAFWDQRMVQETVELFEFELMGDFTEPDLEIQAEGL" gene 24402108..24406319 /locus_tag="TCM_029804" /note="dbxref CacaoGD:Thecc1EG029804" mRNA join(24402108..24402813,24402895..24402969, 24403111..24403176,24403296..24403374,24403784..24403904, 24404044..24404139,24404283..24404395,24404560..24404637, 24404744..24404860,24404971..24405070,24405169..24405269, 24405609..24406319) /locus_tag="TCM_029804" /product="Glucose-6-phosphate/phosphate translocator-related" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021114001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011559t1" /inference="similar to AA sequence:ricco:30190.m011306" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07214t00001" CDS join(24402551..24402813,24402895..24402969, 24403111..24403176,24403296..24403374,24403784..24403904, 24404044..24404139,24404283..24404395,24404560..24404637, 24404744..24404860,24404971..24405070,24405169..24405269, 24405609..24405626) /locus_tag="TCM_029804" /note="dbxref ricco:30190.m011306; paralog of Thecc1EG011559t1" /codon_start=1 /product="Glucose-6-phosphate/phosphate translocator-related" /protein_id="EOY28161.1" /db_xref="TAIR:AT5G46110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZSR7" /translation="MESRLLSRASTITGFPQLRPKLSRDSVNVSFASSKPIGAVGGGG NLIWGRQLRPALLLESSSVSKREILKPVSAAASSPAEGGSDSAGDAKIAPVGFFEKYP ALVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLVSWAVGLPKR APMDSNLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQ SIPFTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDS TNVYAYISIIALFVCIPPAIILEGPQLIKHGFGDAIAKVGMTKFISDLFWVGMFYHLY NQLATNTLERVVPLTHAVGNVLKRVFVIGFSILIFGNKISTQTGIGTVIAIAGVAIYS FIKARMEEEKRQMKAA" mobile_element complement(24406766..24407002) /note="source:CACAO_on_E33_A_scaffold_3 7387 7617" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 24406791..24407350 /note="source:CACAO_on_E169_scaffold_5 1 583" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 24407600..24419838 /locus_tag="TCM_029805" /note="dbxref CacaoGD:Thecc1EG029805" mRNA join(24407600..24408511,24408633..24409070, 24409283..24409362,24409819..24409999,24410090..24410229, 24410319..24410408,24410488..24410652,24410770..24410992, 24411564..24411664,24411837..24411923,24412009..24412161, 24412243..24412398,24413004..24413213,24413299..24413985, 24414088..24414648,24414789..24415421,24415513..24415617, 24415875..24416117,24416430..24418241,24418733..24418955) /locus_tag="TCM_029805" /product="Homeodomain-like transcriptional regulator, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30190.m011307" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008214t2" /inference="similar to AA sequence:ricco:30190.m011307" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc289t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7214t2" mRNA join(24407600..24408511,24408633..24409070, 24409283..24409362,24409819..24410229,24410319..24410408, 24410488..24410652,24410770..24410992,24411564..24411664, 24411837..24411923,24412009..24412161,24412243..24412398, 24413004..24413213,24413299..24413985,24414088..24414648, 24414789..24415421,24415513..24415617,24415875..24416117, 24416430..24418248) /locus_tag="TCM_029805" /product="Homeodomain-like transcriptional regulator, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011307" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008214t2" /inference="similar to AA sequence:ricco:30190.m011307" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc351t14; alternateUTRof:Thecc1EG029805t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7214t2" mRNA join(24407767..24408511,24408633..24409070, 24409283..24409362,24409819..24410229,24410319..24410408, 24410488..24410652,24410770..24410992,24411564..24411664, 24411837..24411923,24412009..24412161,24412243..24412398, 24413004..24413213,24413299..24413985,24414088..24414648, 24414789..24415421,24415513..24415617,24415875..24416117, 24416430..24418241,24418733..24419171,24419435..24419838) /locus_tag="TCM_029805" /product="Homeodomain-like transcriptional regulator, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011307" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008214t2" /inference="similar to AA sequence:ricco:30190.m011307" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc341t11; alternateUTRof:Thecc1EG029805t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7214t2" mRNA join(24408232..24408511,24408633..24409070, 24409283..24409362,24409819..24410229,24410319..24410408, 24410488..24410652,24410770..24410992,24411564..24411664, 24411837..24411923,24412009..24412161,24412243..24412398, 24413004..24413213,24413299..24413985,24414088..24414648, 24414789..24415421,24415513..24415617,24415875..24416117, 24416430..24418680) /locus_tag="TCM_029805" /product="Homeodomain-like transcriptional regulator, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011307" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008214t2" /inference="similar to AA sequence:ricco:30190.m011307" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7214t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7214t2" CDS join(24408370..24408511,24408633..24409070, 24409283..24409362,24409819..24410229,24410319..24410408, 24410488..24410652,24410770..24410992,24411564..24411664, 24411837..24411923,24412009..24412161,24412243..24412398, 24413004..24413213,24413299..24413985,24414088..24414648, 24414789..24415421,24415513..24415617,24415875..24416117, 24416430..24417173) /locus_tag="TCM_029805" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m011307; paralog of Thecc1EG008214t2" /codon_start=1 /product="Homeodomain-like transcriptional regulator, putative isoform 1" /protein_id="EOY28162.1" /db_xref="TAIR:AT1G28420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2Q7" /translation="MDPGSEEENNPSKNPNKNVNSSNEGHVKPKRQMKTPYQLEALEK AYALETYPSEATRAGLSEKLGLSDRQLQMWFCHRRLKEKKETPSKKPRKGAALPPESP IDDLHAGPEPDYGSGSGSGSSPYTDSRKLGGSSSRGMTEDVPTARRYYESQQSIMELR AIACVEAQLGEPLRDDGPMLGMEFDPLPPDAFGAIPEPQKRSGHPYESKAYERHDGRS SKAAVRALHEYQFLPEHASLRSDAYGQVTQSHFHESPVDGARARATSFVHGEEPLPRV HGIQGHGSRVRVLPQQDKTGIIPTSSQVADDSLAERESFTNGRLNTQSIGHPVLGSED SYVLSTGQTLNIDADLRNDRKRKSDENRIAREVEAHENRIRKELEKLDLKRRKSEERM RKEMERHARERRKEEERLVREKQREEERSQREQRREMERREKFLQKECLRAEKRRQKE ELRREKEAERRRVAMEKATARKIAKESMDLIEDEQLELMELAAASKGIPSIIHLDHDS LQNLESFRDSLSLFPPKSVQLKRPFAIQPWIDSEENVGNLLMAWRFLITFADVLRLWP FTLDEFVQAFHDYDSRLLGEIHVALLKSIIKDIEDVARTPSTGLGMNQYCAANPEGGH PQIVEGAYSWGFDIRNWQRHLNPLTWPEIFRQLAISAGLGPQLKKRNAAWTFMGDNDE GKGCEDVVSTLRNGSAAENAFVLMREKGLLLPRRSRHRLTPGTVKFAAFHVLSLEGRE GLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYCVRPAYRKDP TDAEAILAAARKKIRQFENGFLGGEDADEVERDEVERDEESECDVDEEPEVDDIATPS NANKDADYPKDEVNTCSGSGKVHVSTDALNVPSEFDKDFSSFPPNIMKDANGPSNTGQ YVAREEMGTGNPDQQNIEIDESKSGESWIQGLSEGEYSHLSVEERLNALVALIGIANE GNSIRAVLEDRLEAANALKKQMWVEAQLDKSRLKEETMVKMDFPSMMGIKAEPQLPNS VVEGSQSPFPAAYNKNDEASPSIPDDQKPLLCSQNVQNDLNSYPAERALVLQEASMGP DNFSAQQIGHASKRSRSQLKSYIAHRAEEMYVYRSLPLGQDRRRNRYWQFVASASKND PCSGRIFVELRDGNWRLIDSEEAFDTLLTSLDARGIRESHLRIMLQKIETSFKENVRR NLQCARAIGRSGSSTENEVSELDSSPDFPASFDSPSSAICGLNFDALETLPSFKIQLG RNENEKKLALKRYQDFQRWIWKECYNSSTLCAMKYGKKRCVQLLAVCDVCLRSHIPEE MHCGYCHQTFGSVNNSFNFSEHEIQCKENRKLDTKDTCTIDYSLPLGISLLKSLCALV EVSIPPEALESVWIEGRRKMWGRELNASSSVDELLKILTHLESAIKRDHLLSNFETTK ELLGSNLQSESDSSVSVLPWIPETTAAVALRLLELDVSIMCVKQEKVEPSENKEARAY IKLPSRTSLFIKNKELELKELDQDEAMKEENFADMSHSKRNSYKRGRGGREQGSGRKW QRRASGSRYDTGKRSAREKNNLSFRLKQQGQRTNGRSSGRGRRTVRKRAERRAADNTM VARVADVIKPKVSDVRDLDEEWRTEKFRVMQMVNPPDSNSAEEESDDNAQGEGYGQGN WDLDYNGASNGWNAEAMEASDEDDDAYEDDNGVEQLGEEDSDGDLEISDASDVVANKA GNDDGSDLAVSEDYSD" CDS join(24408370..24408511,24408633..24409070, 24409283..24409362,24409819..24410229,24410319..24410408, 24410488..24410652,24410770..24410992,24411564..24411664, 24411837..24411923,24412009..24412161,24412243..24412398, 24413004..24413213,24413299..24413985,24414088..24414648, 24414789..24415421,24415513..24415617,24415875..24416117, 24416430..24417173) /locus_tag="TCM_029805" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m011307; paralog of Thecc1EG008214t2" /codon_start=1 /product="Homeodomain-like transcriptional regulator, putative isoform 1" /protein_id="EOY28163.1" /db_xref="TAIR:AT1G28420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2Q7" /translation="MDPGSEEENNPSKNPNKNVNSSNEGHVKPKRQMKTPYQLEALEK AYALETYPSEATRAGLSEKLGLSDRQLQMWFCHRRLKEKKETPSKKPRKGAALPPESP IDDLHAGPEPDYGSGSGSGSSPYTDSRKLGGSSSRGMTEDVPTARRYYESQQSIMELR AIACVEAQLGEPLRDDGPMLGMEFDPLPPDAFGAIPEPQKRSGHPYESKAYERHDGRS SKAAVRALHEYQFLPEHASLRSDAYGQVTQSHFHESPVDGARARATSFVHGEEPLPRV HGIQGHGSRVRVLPQQDKTGIIPTSSQVADDSLAERESFTNGRLNTQSIGHPVLGSED SYVLSTGQTLNIDADLRNDRKRKSDENRIAREVEAHENRIRKELEKLDLKRRKSEERM RKEMERHARERRKEEERLVREKQREEERSQREQRREMERREKFLQKECLRAEKRRQKE ELRREKEAERRRVAMEKATARKIAKESMDLIEDEQLELMELAAASKGIPSIIHLDHDS LQNLESFRDSLSLFPPKSVQLKRPFAIQPWIDSEENVGNLLMAWRFLITFADVLRLWP FTLDEFVQAFHDYDSRLLGEIHVALLKSIIKDIEDVARTPSTGLGMNQYCAANPEGGH PQIVEGAYSWGFDIRNWQRHLNPLTWPEIFRQLAISAGLGPQLKKRNAAWTFMGDNDE GKGCEDVVSTLRNGSAAENAFVLMREKGLLLPRRSRHRLTPGTVKFAAFHVLSLEGRE GLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYCVRPAYRKDP TDAEAILAAARKKIRQFENGFLGGEDADEVERDEVERDEESECDVDEEPEVDDIATPS NANKDADYPKDEVNTCSGSGKVHVSTDALNVPSEFDKDFSSFPPNIMKDANGPSNTGQ YVAREEMGTGNPDQQNIEIDESKSGESWIQGLSEGEYSHLSVEERLNALVALIGIANE GNSIRAVLEDRLEAANALKKQMWVEAQLDKSRLKEETMVKMDFPSMMGIKAEPQLPNS VVEGSQSPFPAAYNKNDEASPSIPDDQKPLLCSQNVQNDLNSYPAERALVLQEASMGP DNFSAQQIGHASKRSRSQLKSYIAHRAEEMYVYRSLPLGQDRRRNRYWQFVASASKND PCSGRIFVELRDGNWRLIDSEEAFDTLLTSLDARGIRESHLRIMLQKIETSFKENVRR NLQCARAIGRSGSSTENEVSELDSSPDFPASFDSPSSAICGLNFDALETLPSFKIQLG RNENEKKLALKRYQDFQRWIWKECYNSSTLCAMKYGKKRCVQLLAVCDVCLRSHIPEE MHCGYCHQTFGSVNNSFNFSEHEIQCKENRKLDTKDTCTIDYSLPLGISLLKSLCALV EVSIPPEALESVWIEGRRKMWGRELNASSSVDELLKILTHLESAIKRDHLLSNFETTK ELLGSNLQSESDSSVSVLPWIPETTAAVALRLLELDVSIMCVKQEKVEPSENKEARAY IKLPSRTSLFIKNKELELKELDQDEAMKEENFADMSHSKRNSYKRGRGGREQGSGRKW QRRASGSRYDTGKRSAREKNNLSFRLKQQGQRTNGRSSGRGRRTVRKRAERRAADNTM VARVADVIKPKVSDVRDLDEEWRTEKFRVMQMVNPPDSNSAEEESDDNAQGEGYGQGN WDLDYNGASNGWNAEAMEASDEDDDAYEDDNGVEQLGEEDSDGDLEISDASDVVANKA GNDDGSDLAVSEDYSD" CDS join(24408370..24408511,24408633..24409070, 24409283..24409362,24409819..24410229,24410319..24410408, 24410488..24410652,24410770..24410992,24411564..24411664, 24411837..24411923,24412009..24412161,24412243..24412398, 24413004..24413213,24413299..24413985,24414088..24414648, 24414789..24415421,24415513..24415617,24415875..24416117, 24416430..24417173) /locus_tag="TCM_029805" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30190.m011307; paralog of Thecc1EG008214t2" /codon_start=1 /product="Homeodomain-like transcriptional regulator, putative isoform 1" /protein_id="EOY28165.1" /db_xref="TAIR:AT1G28420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2Q7" /translation="MDPGSEEENNPSKNPNKNVNSSNEGHVKPKRQMKTPYQLEALEK AYALETYPSEATRAGLSEKLGLSDRQLQMWFCHRRLKEKKETPSKKPRKGAALPPESP IDDLHAGPEPDYGSGSGSGSSPYTDSRKLGGSSSRGMTEDVPTARRYYESQQSIMELR AIACVEAQLGEPLRDDGPMLGMEFDPLPPDAFGAIPEPQKRSGHPYESKAYERHDGRS SKAAVRALHEYQFLPEHASLRSDAYGQVTQSHFHESPVDGARARATSFVHGEEPLPRV HGIQGHGSRVRVLPQQDKTGIIPTSSQVADDSLAERESFTNGRLNTQSIGHPVLGSED SYVLSTGQTLNIDADLRNDRKRKSDENRIAREVEAHENRIRKELEKLDLKRRKSEERM RKEMERHARERRKEEERLVREKQREEERSQREQRREMERREKFLQKECLRAEKRRQKE ELRREKEAERRRVAMEKATARKIAKESMDLIEDEQLELMELAAASKGIPSIIHLDHDS LQNLESFRDSLSLFPPKSVQLKRPFAIQPWIDSEENVGNLLMAWRFLITFADVLRLWP FTLDEFVQAFHDYDSRLLGEIHVALLKSIIKDIEDVARTPSTGLGMNQYCAANPEGGH PQIVEGAYSWGFDIRNWQRHLNPLTWPEIFRQLAISAGLGPQLKKRNAAWTFMGDNDE GKGCEDVVSTLRNGSAAENAFVLMREKGLLLPRRSRHRLTPGTVKFAAFHVLSLEGRE GLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYCVRPAYRKDP TDAEAILAAARKKIRQFENGFLGGEDADEVERDEVERDEESECDVDEEPEVDDIATPS NANKDADYPKDEVNTCSGSGKVHVSTDALNVPSEFDKDFSSFPPNIMKDANGPSNTGQ YVAREEMGTGNPDQQNIEIDESKSGESWIQGLSEGEYSHLSVEERLNALVALIGIANE GNSIRAVLEDRLEAANALKKQMWVEAQLDKSRLKEETMVKMDFPSMMGIKAEPQLPNS VVEGSQSPFPAAYNKNDEASPSIPDDQKPLLCSQNVQNDLNSYPAERALVLQEASMGP DNFSAQQIGHASKRSRSQLKSYIAHRAEEMYVYRSLPLGQDRRRNRYWQFVASASKND PCSGRIFVELRDGNWRLIDSEEAFDTLLTSLDARGIRESHLRIMLQKIETSFKENVRR NLQCARAIGRSGSSTENEVSELDSSPDFPASFDSPSSAICGLNFDALETLPSFKIQLG RNENEKKLALKRYQDFQRWIWKECYNSSTLCAMKYGKKRCVQLLAVCDVCLRSHIPEE MHCGYCHQTFGSVNNSFNFSEHEIQCKENRKLDTKDTCTIDYSLPLGISLLKSLCALV EVSIPPEALESVWIEGRRKMWGRELNASSSVDELLKILTHLESAIKRDHLLSNFETTK ELLGSNLQSESDSSVSVLPWIPETTAAVALRLLELDVSIMCVKQEKVEPSENKEARAY IKLPSRTSLFIKNKELELKELDQDEAMKEENFADMSHSKRNSYKRGRGGREQGSGRKW QRRASGSRYDTGKRSAREKNNLSFRLKQQGQRTNGRSSGRGRRTVRKRAERRAADNTM VARVADVIKPKVSDVRDLDEEWRTEKFRVMQMVNPPDSNSAEEESDDNAQGEGYGQGN WDLDYNGASNGWNAEAMEASDEDDDAYEDDNGVEQLGEEDSDGDLEISDASDVVANKA GNDDGSDLAVSEDYSD" CDS join(24408370..24408511,24408633..24409070, 24409283..24409362,24409819..24409999,24410090..24410229, 24410319..24410408,24410488..24410652,24410770..24410992, 24411564..24411664,24411837..24411923,24412009..24412161, 24412243..24412398,24413004..24413213,24413299..24413985, 24414088..24414648,24414789..24415421,24415513..24415617, 24415875..24416117,24416430..24417173) /locus_tag="TCM_029805" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30190.m011307; paralog of Thecc1EG008214t2" /codon_start=1 /product="Homeodomain-like transcriptional regulator, putative isoform 3" /protein_id="EOY28164.1" /db_xref="TAIR:AT1G28420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2Q7" /translation="MDPGSEEENNPSKNPNKNVNSSNEGHVKPKRQMKTPYQLEALEK AYALETYPSEATRAGLSEKLGLSDRQLQMWFCHRRLKEKKETPSKKPRKGAALPPESP IDDLHAGPEPDYGSGSGSGSSPYTDSRKLGGSSSRGMTEDVPTARRYYESQQSIMELR AIACVEAQLGEPLRDDGPMLGMEFDPLPPDAFGAIPEPQKRSGHPYESKAYERHDGRS SKAAVRALHEYQFLPEHASLRSDAYGQVTQSHFHESPVDGARARATSFVHGEEPLPRV HGIQERESFTNGRLNTQSIGHPVLGSEDSYVLSTGQTLNIDADLRNDRKRKSDENRIA REVEAHENRIRKELEKLDLKRRKSEERMRKEMERHARERRKEEERLVREKQREEERSQ REQRREMERREKFLQKECLRAEKRRQKEELRREKEAERRRVAMEKATARKIAKESMDL IEDEQLELMELAAASKGIPSIIHLDHDSLQNLESFRDSLSLFPPKSVQLKRPFAIQPW IDSEENVGNLLMAWRFLITFADVLRLWPFTLDEFVQAFHDYDSRLLGEIHVALLKSII KDIEDVARTPSTGLGMNQYCAANPEGGHPQIVEGAYSWGFDIRNWQRHLNPLTWPEIF RQLAISAGLGPQLKKRNAAWTFMGDNDEGKGCEDVVSTLRNGSAAENAFVLMREKGLL LPRRSRHRLTPGTVKFAAFHVLSLEGREGLTVLELADKIQKSGLRDLTTSKTPEASIS VALTRDAKLFERIAPSTYCVRPAYRKDPTDAEAILAAARKKIRQFENGFLGGEDADEV ERDEVERDEESECDVDEEPEVDDIATPSNANKDADYPKDEVNTCSGSGKVHVSTDALN VPSEFDKDFSSFPPNIMKDANGPSNTGQYVAREEMGTGNPDQQNIEIDESKSGESWIQ GLSEGEYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKKQMWVEAQLDK SRLKEETMVKMDFPSMMGIKAEPQLPNSVVEGSQSPFPAAYNKNDEASPSIPDDQKPL LCSQNVQNDLNSYPAERALVLQEASMGPDNFSAQQIGHASKRSRSQLKSYIAHRAEEM YVYRSLPLGQDRRRNRYWQFVASASKNDPCSGRIFVELRDGNWRLIDSEEAFDTLLTS LDARGIRESHLRIMLQKIETSFKENVRRNLQCARAIGRSGSSTENEVSELDSSPDFPA SFDSPSSAICGLNFDALETLPSFKIQLGRNENEKKLALKRYQDFQRWIWKECYNSSTL CAMKYGKKRCVQLLAVCDVCLRSHIPEEMHCGYCHQTFGSVNNSFNFSEHEIQCKENR KLDTKDTCTIDYSLPLGISLLKSLCALVEVSIPPEALESVWIEGRRKMWGRELNASSS VDELLKILTHLESAIKRDHLLSNFETTKELLGSNLQSESDSSVSVLPWIPETTAAVAL RLLELDVSIMCVKQEKVEPSENKEARAYIKLPSRTSLFIKNKELELKELDQDEAMKEE NFADMSHSKRNSYKRGRGGREQGSGRKWQRRASGSRYDTGKRSAREKNNLSFRLKQQG QRTNGRSSGRGRRTVRKRAERRAADNTMVARVADVIKPKVSDVRDLDEEWRTEKFRVM QMVNPPDSNSAEEESDDNAQGEGYGQGNWDLDYNGASNGWNAEAMEASDEDDDAYEDD NGVEQLGEEDSDGDLEISDASDVVANKAGNDDGSDLAVSEDYSD" gene complement(24417650..24419958) /locus_tag="TCM_029806" /note="dbxref CacaoGD:Thecc1EG029806" mRNA complement(join(24417650..24418247,24418739..24419169, 24419433..24419958)) /locus_tag="TCM_029806" /product="DNAJ heat shock family protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011309" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008213t1" /inference="similar to AA sequence:ricco:30190.m011309" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03273t00001" CDS complement(join(24417809..24418247,24418739..24419169, 24419433..24419597)) /locus_tag="TCM_029806" /note="dbxref ricco:30190.m011309; paralog of Thecc1EG008213t1" /codon_start=1 /product="DNAJ heat shock family protein" /protein_id="EOY28166.1" /db_xref="TAIR:AT2G20560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SP09" /translation="MGADYYKILQVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKEAE AKFKQISEAYEVLSDPQKRAIYDQYGEEGLKGQVPPPDAGGPGGATFFQTGDGPNVFR FNPRNANDIFAEFFGFSSPFGGMGGGGAGSGMRGGSRAFGGMFGDDIFSSFGEGRPMS QAPRKAPPIENTLPCSLEELYNGTTKKMKISREIADASGKTLPVQEILTIDIKPGWKK GTKITFPEKGNEQPNVIPADLVFIIDEKPHSTFTREGNDLVVTQKISLAEALTGYTVH LTTLDGRSLTIPITSVIHPNYEEVVPREGMPIPKEPSRRGNLRIKFNIKFPTRLTAEQ KSGIKKLLAP" mobile_element complement(24420215..24421284) /note="source:scaffold_10_CACTA_0130 8542 9608" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24421255..24421335) /note="source:scaffold_10_CACTA_0130 6865 6942" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24421305..24421983) /note="source:scaffold_10_CACTA_0130 6253 6942" /mobile_element_type="transposon:TIR/CACTA" gene 24422278..24427022 /locus_tag="TCM_029807" /note="dbxref CacaoGD:Thecc1EG029807" mRNA join(24422278..24422647,24422759..24422884, 24423136..24423236,24423646..24423759,24424098..24424154, 24424350..24424496,24424743..24424847,24425229..24425390, 24425601..24425674,24425991..24426114,24426202..24426245, 24426326..24426446,24426535..24427022) /locus_tag="TCM_029807" /product="Phosphorylase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018712t1" /inference="similar to AA sequence:ricco:30190.m011310" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc901t1" CDS join(24423715..24423759,24424098..24424154, 24424350..24424496,24424743..24424847,24425229..24425390, 24425601..24425674,24425991..24426114,24426202..24426245, 24426326..24426446,24426535..24426618) /locus_tag="TCM_029807" /note="dbxref ricco:30190.m011310; paralog of Thecc1EG018712t1" /codon_start=1 /product="Phosphorylase" /protein_id="EOY28167.1" /db_xref="TAIR:AT3G29320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RB97" /translation="MPNGFSSNFGLSCSRDFYELWPHKFQYKTNGVTQHRWIVVSNPG LCALISKWLGTEAWIHDVDLLTGLRDDAANGELRQEWKMVSLDAMVDMQTKRIHEYKR RLLNILGIIHRYDCIKNMGKKDRVKVVPCVCIIGGIAAPGYETAKQIIKLCHAVAEKI NNNSDIRDLLKLVFIPDYNVSVAELVIPGADLSQHISTAGHETSGTSSMKFLMNGCLL LATKDGSTVEIIEEIVDDNMFSFSFYLVQFSRVVRMIRDGYFGFKDYFKSLCDDIEGG HDYDLLGAEFKSYLEAQAAADKAFVDQERWTQNEYTQYCWLWEI" gene 24427091..24430835 /locus_tag="TCM_029808" /note="dbxref CacaoGD:Thecc1EG029808" mRNA join(24427091..24427323,24427425..24427552, 24427758..24427805,24427947..24428060,24428712..24428780, 24428915..24428968,24429193..24429348,24430435..24430515, 24430602..24430835) /locus_tag="TCM_029808" /product="Epidermal growth factor receptor substrate 15-like 1, putative" /inference="alignment:exonerate- protein:2:ricco:30190.m011311" /inference="similar to AA sequence:Phytozome:GSVIVT01021110001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7118t4" CDS join(24427185..24427323,24427425..24427552, 24427758..24427805,24427947..24428060,24428712..24428780, 24428915..24428968,24429193..24429348,24430435..24430515, 24430602..24430667) /locus_tag="TCM_029808" /codon_start=1 /product="Epidermal growth factor receptor substrate 15-like 1, putative" /protein_id="EOY28168.1" /db_xref="Phytozome:GSVIVT01021110001" /db_xref="TAIR:AT1G28410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AJH7" /translation="MAAYLILIPAIFSCFFFSLASQNEQNSNHNLLIRELHDAKLKIS RLESVLEESVQNMNAKTLYLKEREKLLEEMADKITYLQSTLSSLKDDSLLADERLKDL EEEVRLLWAVSRKNNFELHVLESKAQEAEDKLEVVTLQVEKMAEVVTEQWIQIQHLEQ ALQIAEMRASQARRERNMRCTFLKFISDLSERHVPKMFGALGSNSLSKGSAINYYISQ ALQQLRRLFSAIKKYHHELQGFIKQEMRRNEFTAAFVNDELVFFLASALITFPILSAW MLLLSQFS" mobile_element complement(24430225..24430316) /note="source:CACAO_M_E44848_F172_scaffold_6 1899 1962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24430243..24430317 /note="source:scaffold_9_CACTA_0927 15066 15139" /mobile_element_type="transposon:TIR/CACTA" gene 24431284..24431993 /locus_tag="TCM_029809" /note="dbxref CacaoGD:Thecc1EG029809" mRNA 24431284..24431993 /locus_tag="TCM_029809" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011311" /inference="similar to AA sequence:Phytozome:POPTR_0004s04800.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc541t26_C2" CDS 24431486..24431953 /locus_tag="TCM_029809" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28169.1" /db_xref="Phytozome:POPTR_0004s04800.1" /db_xref="TAIR:AT2G33855.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q29Q74" /translation="MDDTTWEQKLQASTHILTSPTTSPPLHSQFFISSQIPCYLNWDY PPVLCNKPNTDRFPSLHLKWGFSIFLKRVSTLGLPETSWRSKCPYHHPPPLILAKGVE EAQWDDGQKRVFVRKRLRRKLRGSDIQPWIPILIPDLLLFSLLLFNPFPLNDS" gene 24434972..24436064 /locus_tag="TCM_029810" /note="dbxref CacaoGD:Thecc1EG029810" mRNA 24434972..24436064 /locus_tag="TCM_029810" /product="E6, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s05640.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16720t1" CDS 24435041..24435814 /locus_tag="TCM_029810" /codon_start=1 /product="E6, putative" /protein_id="EOY28170.1" /translation="MATSPKLIPILFLLAFFFIQIHAREFFSKIPRVNNNEKESTTVP NTREQEHETFIPENEKTSLPNREEETFGRQEQEPRFIPETRNGYGLYGHESGQFPPTT TTTTTTTTKETYEPYVTPVKYHADEPYNMIPEANNNNKNTYYYNKNTYETEKQNLGEA RFTERGWSTKENQNNNYYYGNNGYNNGEKQGLSDTRFLENGKYFYDVKNENNYYANQF ENSRGVASRNEYNENRYRNMGRYNQNQEEFEENEEEFEP" gene 24440566..24445848 /locus_tag="TCM_029811" /note="dbxref CacaoGD:Thecc1EG029811" mRNA join(24440566..24441017,24441833..24441997, 24442107..24443060,24443146..24443267,24444503..24444574, 24445308..24445848) /locus_tag="TCM_029811" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021107001" /inference="similar to AA sequence:Phytozome:GSVIVT01021107001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc413t2" CDS join(24441006..24441017,24441833..24441997, 24442107..24442367) /locus_tag="TCM_029811" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28171.1" /db_xref="Phytozome:GSVIVT01021107001" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJD4" /translation="MATQNREMSNGWPLGLQIMTMRLRLQERLQAAAPTVEPYSLHMP SSSFSSFSSSNLDTESSASFFQDNSVSLGRLIGFRPRDRGALYFQNTIHAEENNRLPV TGACKDVSRRHNSDMSQGICIPLILGALVKMSRNRSKSKQLDD" gene 24446148..24447584 /locus_tag="TCM_029812" /note="dbxref CacaoGD:Thecc1EG029812" mRNA join(24446148..24447184,24447335..24447584) /locus_tag="TCM_029812" /product="Cysteine-rich RLK 8, putative" /inference="alignment:exonerate-protein:2:frave:gene11722" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029813t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s09240.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11881t00001" CDS join(24446311..24447184,24447335..24447411) /locus_tag="TCM_029812" /note="paralog of Thecc1EG029813t1" /codon_start=1 /product="Cysteine-rich RLK 8, putative" /protein_id="EOY28172.1" /db_xref="Phytozome:POPTR_0017s09240.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYJ2" /translation="MDSSRLALLFFLVSIQLSALTSVQPEKLLRLCSTQSNFTMNSTY GNNLKHLFSTITSNTQIDYGFYNVSYGQNSDEVNALGLCRGDVKPDICRSCITNATNE FTENCPNQREAIVWYDECMLRYSNRSIFGKMQFPPAWVMENVNNVSNVNQFNQVLAIL LGDLRIQAASGDSLHKFATGNATVSNSQAIYALAQCTPDLSQVECNNCLSNATESLPL WRVGARILTPSCTVRYENYIFYGPLVDMPPPTMSPASPPVDDAPLSPPADVPPPPSLV TPAPPPQQPNLATRKGNTNCRFQFLAPMVSFAILRILKSL" gene 24447671..24450166 /locus_tag="TCM_029813" /note="dbxref CacaoGD:Thecc1EG029813" mRNA join(24447671..24449267,24449642..24450166) /locus_tag="TCM_029813" /product="Cysteine-rich RLK 8, putative" /inference="alignment:exonerate-protein:2:frave:gene11722" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029812t1" /inference="similar to AA sequence:ricco:29842.m003670" /note="quality class is medium, express is medium, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1259t1_C2" CDS join(24448190..24449267,24449642..24449715) /locus_tag="TCM_029813" /note="dbxref ricco:29842.m003670; paralog of Thecc1EG029812t1" /codon_start=1 /product="Cysteine-rich RLK 8, putative" /protein_id="EOY28173.1" /db_xref="TAIR:AT4G05200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXT8" /translation="MDSSRLAVLFSLVFIRLCAFTYAEPVKLVQVCSHKSDFSLNSTY ENNLNDLYLTTITSNTKIDHGFFSASYGEDSDKVNAIGLCRGDLVADICRSCINDAIN DFAEYCPNQREAIAWYDECMLRYSNRSIFGKMEVEPFRSLVNVNVVNNVTNVTHFNQV LATLLDRLKTQAASGRSLRRVATGNANVSKSQTLYAMVQCTPDLSPEDCNDCLRNVTE SLPRCCNGRKGARVLTPSCNIRYENHLFYGPLVDMTPPTPSPAPSPSSLAVDAPSSPP VDAPSSPPVDAPAFPPVYAPAFPPVDAPASPPVDAPALPPFDEPVLPPEDYDSPLLPP YDASSPPPPEPPAPPLQQPDHATGNGDMNSKFQALGTAVLLMILQYFIF" gene complement(24450712..24457516) /locus_tag="TCM_029814" /note="dbxref CacaoGD:Thecc1EG029814" mRNA complement(join(24450712..24451190,24451977..24452357, 24457509..24457516)) /locus_tag="TCM_029814" /product="Nucleic acid-binding" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021104001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010354t1" /inference="similar to AA sequence:ricco:30190.m011316" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06047t00001" CDS complement(join(24451000..24451190,24451977..24452259)) /locus_tag="TCM_029814" /note="dbxref ricco:30190.m011316; paralog of Thecc1EG010354t1" /codon_start=1 /product="Nucleic acid-binding" /protein_id="EOY28174.1" /db_xref="TAIR:AT2G33845.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RYC3" /translation="MATTGQQQGQEQEQQQQQGQEQTKTTEKRKPVFVKVDQLKPGTN GHTLIAKVLSSNMVLQKGRAASQHLRQTRIAECLVGDETGTILFTARNDQVDLMKPVA TVILRNAKIDMFKGSMRLAVDKWGRIEVTDPANFVVKEDNNLSLVEYELVNVVEE" gene 24453789..24457603 /locus_tag="TCM_029815" /note="dbxref CacaoGD:Thecc1EG029815" mRNA join(24453789..24453901,24454049..24454188, 24456030..24456107,24456244..24456527,24457209..24457603) /locus_tag="TCM_029815" /product="Drought-responsive family protein" /inference="alignment:exonerate-protein:2:frave:gene29742" /inference="similar to AA sequence:frave:gene29742" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05620t00001" CDS join(24453817..24453901,24454049..24454188, 24456030..24456107,24456244..24456527,24457209..24457317) /locus_tag="TCM_029815" /note="dbxref frave:gene29742" /codon_start=1 /product="Drought-responsive family protein" /protein_id="EOY28175.1" /db_xref="TAIR:AT3G05700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3I9" /translation="MDSDFWTSRLAAAKRQYTLQHHQQSSHLDRLSMDDFEVDDEVRP DFPCPYCYEDFDIASLCSHLEDEHPCESKVTICPVCSVKVARDMLSHIMLQHGHLFKL QRCRRLRRVAIPNSQALSLLGRDLREAHLQVLLGGGGYRSSSANVSNAATDSFLSSLI LNFPASEAEEISKSVVTSAEDTAAKNVAPAHMWKSSFDPSLSYEEREKRIRQATGRAG FVQDLLLSTLLND" mobile_element 24453974..24454044 /note="source:CACAO_PIF_E144_scaffold_10 5977 6048" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 24458772..24460256 /locus_tag="TCM_029816" /note="dbxref CacaoGD:Thecc1EG029816" mRNA join(24458772..24459365,24459812..24460256) /locus_tag="TCM_029816" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage" CDS join(24459256..24459365,24459812..24459836) /locus_tag="TCM_029816" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28176.1" /translation="MMVELFVLGCTGVVVFLHGANFFFHILSQHLAVRSLSFLGFVGW " gene 24460641..24464359 /locus_tag="TCM_029817" /note="dbxref CacaoGD:Thecc1EG029817" mRNA 24460641..24464359 /locus_tag="TCM_029817" /product="Tetratricopeptide repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04740.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04740.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1003t1" CDS 24461146..24463986 /locus_tag="TCM_029817" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein" /protein_id="EOY28177.1" /db_xref="Phytozome:POPTR_0004s04740.1" /db_xref="TAIR:AT3G57430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5ZDP1" /translation="MNKWIMTVRYLSSLQFQKSLHHHQRPYPHFKSFTFSSQHFQTSA KLTHGSKSNPFLSSTQEPNFTPISVPYYSKLLSKCNATKNPSPGMQIHAITIKFGSTK DPKSRNLLISLYAKCKLFRYARKLVDESPEPDLVSWSALISGYAQNGFGKEAILAFYE MHLLGVRCNDFTFPSVLKACTFTRDLELGRQIHAVVVVTGFECDEYVANSLVVMYAKC GEFGDSRRLFEDMPERSVVSWNALLSCYVQSDYCGEAVELFHEMVSSGIKPNEFSLSS MINAYTGLEDSGQGRKTHGFLIKLGYDSDPFSKNALVDMCAKVGSLEDAVFVFEEIAR PDIVSWNAVIAGCVLHENHDWALELFGQMRRSGTHPNMFTLSSALKACAGTGHKKLGR QLHCNLIKINVGSDPFVDVGLIDMYSKTYLMNDARMVFNLMPDKDLIAWNAVISGHSQ NGEDMEAISLFPLMYKEGIGFNQTTLSTVLKSIACLQANNVCKQVHALSVKSGFESDN YVVNSLIDAYGKCALLEDATRIFRECLIVDLVAFTSMITAYAQSGQGEEALKLYLEML DRGIEPDPFVGSSLLNACANLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGS IDDADRVFSKIPERGIVSWSSMIGGLAQHGHGKEALRVFNQMLKYGVSPNQITLVSVL CACNHAGLITEAKRYFGSMRELFGFEPMQEHYACMIDLLGRAGRLDEAMELANTMPFQ ADASVWGALLGAARIHKNVELGQLAAEMLFTLEPEKSGTHVLLANIYASVGMWENVAK VRRLMKDCNVKKEPGISWIEVKDMIHTFIVGDRSHARSEEIYAKLDELSERLTKAGYV PMVEFDLHDVERGEKEELLYHHSEKLAVAFGLIATPPGAPIRVKKNLRVCVDCHTAFK FISKIVSREIIVRDINRYHHFKDGSCSCGDYW" gene complement(24464402..24469526) /locus_tag="TCM_029818" /note="dbxref CacaoGD:Thecc1EG029818" mRNA complement(join(24464402..24465380,24466016..24466182, 24466698..24466881,24466997..24467080,24467394..24467580, 24467800..24468038,24468738..24469526)) /locus_tag="TCM_029818" /product="MAC/Perforin domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04730.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046709t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04730.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7188t1" CDS complement(join(24464691..24465380,24466016..24466182, 24466698..24466881,24466997..24467080,24467394..24467580, 24467800..24468038,24468738..24469007)) /locus_tag="TCM_029818" /note="paralog of Thecc1EG046709t1" /codon_start=1 /product="MAC/Perforin domain-containing protein" /protein_id="EOY28178.1" /db_xref="Phytozome:POPTR_0004s04730.1" /db_xref="TAIR:AT1G28380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3I8" /translation="MAAYPYKMDPQSAAEKAVSVIGFGYDLSNDIRLSACKPGPSGSR LIELDSAGSRDVVFPGGVVVKNVLNSIKCDKGERTRFRSDVLSFNQMSERFNQDLSLS GKIPVGLFNAMFEFKGCWQKDATSTKTLALDGWFITLYNVELERTHLTLSERVKREVP TTWDPAALAEFIEKYGTHVVVGVKMGGKDVIHVKQLQNSNLPPNEVQKNLKQLADERF SEGVNIPEYSGKPKEEHYMPWDQEGVLAAAIRPPVVTCSKNKDILNIYIRRGGIDFGQ SHSQWLSTISQSPNVISMSFVPITSLLGGARGNGFLSHAVNLYLRYKPPIEELHVFLE FQLFRQWAPVYGDLPLSLKRRKQGSPSLQFTFMGPKLYVNTTRVDTGNRPVTGIRLYL EGKKSDHLAIHLQHLSTLPTILQLLDDHSYEPSEEPERGYLEPVKWSIFSHVCTAPVE HRGSRFDDTASIVTKAWFEVKAVGMKKVLFLRLGFSMVALARIRRSEWDGPSTLSRKS GVFSMLISTRFSSGLNPPEKPLKVDLNSAVFPGGPPSPTKAPKMANFVDTKEMVRGPE DPPGYWVVTGAKLCVEGGRISIKAKYSLLTIMSEESMMLM" mobile_element complement(24470211..24470387) /note="source:scaffold_7_CACTA_0795 2862 3042" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24470971..24470993) /note="source:CACAO_Mutator_E39_scaffold_1 10745 10824" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(24470994..24471052) /note="source:INTACT319_F3_scaffold_1-int 5726 5789" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24471529..24473983) /locus_tag="TCM_029819" /note="dbxref CacaoGD:Thecc1EG029819" mRNA complement(join(24471529..24472099,24472283..24472371, 24473467..24473983)) /locus_tag="TCM_029819" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.44 coverage" CDS complement(join(24471956..24472099,24472283..24472351)) /locus_tag="TCM_029819" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28179.1" /translation="MKCGGLYEWGVGTAFGLWPLLAKERIGTMELLNILVPVMSTKEC GTIVNKAKLGYNEVKALELSIAVVID" gene 24476672..24477863 /locus_tag="TCM_029820" /note="dbxref CacaoGD:Thecc1EG029820" mRNA 24476672..24477863 /locus_tag="TCM_029820" /product="Erf domain protein 9, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021098001" /inference="similar to AA sequence:Phytozome:GSVIVT01021098001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02384t00001" CDS 24476783..24477514 /locus_tag="TCM_029820" /codon_start=1 /product="Erf domain protein 9, putative" /protein_id="EOY28180.1" /db_xref="Phytozome:GSVIVT01021098001" /db_xref="TAIR:AT5G44210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJC7" /translation="MAPREKTAVVKGNGNVNGNSKEVHFRGVRKRPWGRYAAEIRDPG KKSRVWLGTFDTAEEAARAYDTAAREFRGAKAKTNFPLPCENLNNGNNCNDNDNNNNS NNQSPSQSSTVESSSREPSLMIYSSPFDLNLGHAAVAGFETPAVRFPFQQVSPVTGVF AAGLPAVASPQLFYFDSFVRPGAVKGQQYQRMRFDHNDFHATFNGGVQSDSDSSSVVD LNHHEIKQRPLLNIDLNQPALPEIA" gene complement(24478392..24480566) /locus_tag="TCM_029821" /note="dbxref CacaoGD:Thecc1EG029821" mRNA complement(join(24478392..24479682,24480239..24480566)) /locus_tag="TCM_029821" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.60 coverage" CDS complement(24478710..24479132) /locus_tag="TCM_029821" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28181.1" /translation="MIRFENGRHKHTQGSDGRITRAVQTRISRSTQSTWNDLSVSYLE TRSLIPLTRRLFFRRTPSYHWHLHFLFLLPAPRSLIYIFAPFARVYLAATVFHLAYHI SRPSNTTLVKKSNRFIRFRHVYRTSQFSAQNLYFPFHI" gene 24478768..24484916 /locus_tag="TCM_029822" /note="dbxref CacaoGD:Thecc1EG029822" mRNA join(24478768..24479006,24482511..24482575, 24484113..24484226,24484539..24484916) /locus_tag="TCM_029822" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.96 coverage" CDS join(24482513..24482575,24484113..24484226, 24484539..24484619) /locus_tag="TCM_029822" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28182.1" /translation="MGALCNGPVVAGIGLFLVIMPKRKTKSESQSSCVIIHDDDDANI NLAHPCMMGHFHACQVKSAVTPWLPTDSLARRGPQRCEDAT" gene complement(24487312..24489436) /locus_tag="TCM_029823" /note="dbxref CacaoGD:Thecc1EG029823" mRNA complement(join(24487312..24489128,24489269..24489436)) /locus_tag="TCM_029823" /product="ERF domain protein 12" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g037085.1" /inference="similar to AA sequence:ricco:30190.m011323" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7192t1" CDS complement(24488218..24488736) /locus_tag="TCM_029823" /note="dbxref ricco:30190.m011323" /codon_start=1 /product="ERF domain protein 12" /protein_id="EOY28183.1" /db_xref="TAIR:AT1G28360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HM27" /translation="MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEA ALAYDGAARSLRGAKAKTNFPAPASAAGLSLDLNLPSDNPHHPHHHRHHRWASASAHH HHRLALGEFLTTGVLKEMKFDADSSSSTKPNVVAVSNGPPVPDNGSTASFFGMVRRGL PIDLNEPPPLWL" gene complement(24488695..24496208) /locus_tag="TCM_029824" /note="dbxref CacaoGD:Thecc1EG029824" mRNA complement(join(24488695..24488722,24490378..24490945, 24491232..24491413,24491589..24491666,24491743..24491814, 24492446..24492517,24492792..24492863,24493735..24493882, 24494034..24495089,24495948..24496164)) /locus_tag="TCM_029824" /product="Receptor like protein 4 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011324" /inference="similar to AA sequence:Phytozome:POPTR_0004s04690.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc69t1; alternateUTRof:Thecc1EG029824t1; inference alignment:Newbler:10:TSA:cgbaL_g09631t00001" mRNA complement(join(24490067..24490945,24491232..24491413, 24491589..24491666,24491743..24491814,24492446..24492517, 24492792..24492863,24493735..24493882,24494034..24495089, 24495948..24496208)) /locus_tag="TCM_029824" /product="Receptor like protein 4 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011324" /inference="similar to AA sequence:Phytozome:POPTR_0004s04690.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09631t00001" mobile_element 24490450..24505345 /note="source:scaffold_6_CACTA_0717 1 14896" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(24490824..24490945,24491232..24491413, 24491589..24491666,24491743..24491814,24492446..24492517, 24492792..24492863,24493735..24493882,24494034..24495089, 24495948..24496017)) /locus_tag="TCM_029824" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Receptor like protein 4 isoform 1" /protein_id="EOY28184.1" /db_xref="Phytozome:POPTR_0004s04690.1" /db_xref="TAIR:AT1G28340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGN1" /translation="MLRFTLLWLLVFFLSLSSSSARPAPFAMRISCGARQNVQTPPTY ARWYKDFAYTGGIPANATRPSFVTPPLKTLRYFPLSEGPENCYNIKRVPKGHYSVRVF FGLVAQPDSDNEPLFDVSVEGTLIHSLKSGWTSHDDQVFAEAFVFLLDGTVSICFHST GHGDPAIISIEILQVDDRAYYFGPEWGKGVILKTTSRLTCGTSKPKFDEDYSGDHWGG DRFWQPIRTFGQNADEPRSTESGIKQASDAPNFYPEALYQSAIVSTDSQPDLAYTIDV EPNKNYSIWLHFAEIDASISGAGKRIFDVLINGGTVFENIDVVDMSGDRYTALVLNTT VALSGRTLTITLRPKTGNHAILNAVEVFQVIAAESKTSPEEVRALQALKKALGLPNRF GWNGDPCVPKEHPWSGADCHFDKSGSKWFIDGLGLDNQGLRGFLPNDISKLHHLQSLN LSGNTIHGAIPSSLGTVTSLEVLDLSYNFLSDSIPESLGQLTALRKLNLNGNSLSGRV PAALGGRLLNGASFNFTDNAGLCGIPGLPTCGPHLSAGAKAGIGFGASLSFLLLVICS VCWWKRRQNILRAQQIAARGAPYAKARTQLSHDIQMSRHHNHGHARTAAENGPSLLS" CDS complement(join(24490824..24490945,24491232..24491413, 24491589..24491666,24491743..24491814,24492446..24492517, 24492792..24492863,24493735..24493882,24494034..24495089, 24495948..24496017)) /locus_tag="TCM_029824" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Receptor like protein 4 isoform 1" /protein_id="EOY28185.1" /db_xref="Phytozome:POPTR_0004s04690.1" /db_xref="TAIR:AT1G28340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGN1" /translation="MLRFTLLWLLVFFLSLSSSSARPAPFAMRISCGARQNVQTPPTY ARWYKDFAYTGGIPANATRPSFVTPPLKTLRYFPLSEGPENCYNIKRVPKGHYSVRVF FGLVAQPDSDNEPLFDVSVEGTLIHSLKSGWTSHDDQVFAEAFVFLLDGTVSICFHST GHGDPAIISIEILQVDDRAYYFGPEWGKGVILKTTSRLTCGTSKPKFDEDYSGDHWGG DRFWQPIRTFGQNADEPRSTESGIKQASDAPNFYPEALYQSAIVSTDSQPDLAYTIDV EPNKNYSIWLHFAEIDASISGAGKRIFDVLINGGTVFENIDVVDMSGDRYTALVLNTT VALSGRTLTITLRPKTGNHAILNAVEVFQVIAAESKTSPEEVRALQALKKALGLPNRF GWNGDPCVPKEHPWSGADCHFDKSGSKWFIDGLGLDNQGLRGFLPNDISKLHHLQSLN LSGNTIHGAIPSSLGTVTSLEVLDLSYNFLSDSIPESLGQLTALRKLNLNGNSLSGRV PAALGGRLLNGASFNFTDNAGLCGIPGLPTCGPHLSAGAKAGIGFGASLSFLLLVICS VCWWKRRQNILRAQQIAARGAPYAKARTQLSHDIQMSRHHNHGHARTAAENGPSLLS" gene 24497972..24499674 /locus_tag="TCM_029825" /note="dbxref CacaoGD:Thecc1EG029825" mRNA join(24497972..24498119,24498846..24499674) /locus_tag="TCM_029825" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g48320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005756t1" /inference="similar to AA sequence:ricco:29709.m001177" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7180t1" CDS 24499015..24499644 /locus_tag="TCM_029825" /note="dbxref ricco:29709.m001177; paralog of Thecc1EG005756t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28186.1" /translation="MFYLIPNIVIIASSSYEKMSSPPAGINRSWFRYFQFEESKDSPS QARNDLLVVFTLIATVTFQAGVTPPGGVWQDDTNGSDRAGRAIYASQPGAFYVFLISN TVAFATSIFVIVSLTHRFPFQLEIRVAAASMLATYASAIFAITPEEVHFRYVLIAVVV PFVLRFLVHMFTKFTNRSRQNPSQFLEFEIPYVETQVHRLSVADNVCEK" gene 24500422..24507744 /locus_tag="TCM_029826" /note="dbxref CacaoGD:Thecc1EG029826" mRNA join(24500422..24500755,24501913..24502390, 24502521..24502747,24502824..24504280,24504510..24505040, 24505119..24505303,24506416..24506582) /locus_tag="TCM_029826" /product="Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s05550.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s05550.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc434t5" mRNA join(24500486..24500755,24501913..24502390, 24502521..24502747,24502824..24504280,24504510..24504579, 24505223..24505303,24506416..24507744) /locus_tag="TCM_029826" /product="Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s05550.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s05550.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc434t2; alternateUTRof:Thecc1EG029826t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc434t5" mRNA join(24500486..24500755,24501913..24502390, 24502521..24502747,24502824..24504280,24504510..24504579, 24506839..24507744) /locus_tag="TCM_029826" /product="Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s05550.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s05550.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc434t4; alternateUTRof:Thecc1EG029826t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc434t5" CDS join(24500593..24500755,24501913..24502390, 24502521..24502747,24502824..24504280,24504510..24504539) /locus_tag="TCM_029826" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 1" /protein_id="EOY28187.1" /db_xref="Phytozome:POPTR_0011s05550.1" /db_xref="TAIR:AT2G33835.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3I2" /translation="MPLSTSAVVARAEKDDERRATSTTEREINSSDMEIDDNDDDEEE GDLQGSSNRNDASNIMESKGHNGCLESGSFSPGKSETRVPSKSLAFSSLLNEPLKTQK EDICANYEDSKYPISGKQPAKEKATQQDVVSEKDARVILQRKAPEDHCEQQSNSKSHS VIGEIHSSVAGKEVVITIPVRYHSGGVNDVKGFKEKSKQMNLQSDDDKRRIKSRSAAP QTSTGSLSPGAELDSGSKRPALICDFFARGWCIKGSSCRFLHIKDSGNNPRQQPEVDV ATADAKGAVQLDEGFDNAAERSSSPGSTDTLPSSVKNKTALSSHFFSERVLPSGHDEN QRLHPFHEINKFPLLQSKDKLMGTSPASQQFSASIDDLGPSKDVRQNSIGQNLPADSY TKPASLSDRGSSTFRNSFLPEYRSSLSGSVTSLGITYSENRSYRVSTWMGSFPFGSSL SACSLGAQKVLDGDREHHTSRLSSLLQSSSPFSRSEPDNFPLNDIARDPLHVTDFRIK ISSDDWEPSVPFRPSFFVTSSISPPRGQYNPLCDSIDMSNAGKRSLKFSFSSQGPSLL NVAYPPTYGDSASTGPVVTECNGDKKIASCHNRYPESLFNNNCHNSGKDSLTTDANDG TSAADMQNGTLVKEEISSVASHVKDISKANKIDTDLDGRHQRDGSRCKKDLKVDRVRE KNEIEVEHKADGDPQKESKAMKHFRAALVDLIKELLKPTWREGHLNRDAHNTIVKKAV DKVLGTVQPHQIPITFESVKQYLSSSQPKIAKLVQGYVDKYSKS" CDS join(24500593..24500755,24501913..24502390, 24502521..24502747,24502824..24504280,24504510..24504539) /locus_tag="TCM_029826" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 1" /protein_id="EOY28188.1" /db_xref="Phytozome:POPTR_0011s05550.1" /db_xref="TAIR:AT2G33835.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3I2" /translation="MPLSTSAVVARAEKDDERRATSTTEREINSSDMEIDDNDDDEEE GDLQGSSNRNDASNIMESKGHNGCLESGSFSPGKSETRVPSKSLAFSSLLNEPLKTQK EDICANYEDSKYPISGKQPAKEKATQQDVVSEKDARVILQRKAPEDHCEQQSNSKSHS VIGEIHSSVAGKEVVITIPVRYHSGGVNDVKGFKEKSKQMNLQSDDDKRRIKSRSAAP QTSTGSLSPGAELDSGSKRPALICDFFARGWCIKGSSCRFLHIKDSGNNPRQQPEVDV ATADAKGAVQLDEGFDNAAERSSSPGSTDTLPSSVKNKTALSSHFFSERVLPSGHDEN QRLHPFHEINKFPLLQSKDKLMGTSPASQQFSASIDDLGPSKDVRQNSIGQNLPADSY TKPASLSDRGSSTFRNSFLPEYRSSLSGSVTSLGITYSENRSYRVSTWMGSFPFGSSL SACSLGAQKVLDGDREHHTSRLSSLLQSSSPFSRSEPDNFPLNDIARDPLHVTDFRIK ISSDDWEPSVPFRPSFFVTSSISPPRGQYNPLCDSIDMSNAGKRSLKFSFSSQGPSLL NVAYPPTYGDSASTGPVVTECNGDKKIASCHNRYPESLFNNNCHNSGKDSLTTDANDG TSAADMQNGTLVKEEISSVASHVKDISKANKIDTDLDGRHQRDGSRCKKDLKVDRVRE KNEIEVEHKADGDPQKESKAMKHFRAALVDLIKELLKPTWREGHLNRDAHNTIVKKAV DKVLGTVQPHQIPITFESVKQYLSSSQPKIAKLVQGYVDKYSKS" CDS join(24500593..24500755,24501913..24502390, 24502521..24502747,24502824..24504280,24504510..24504539) /locus_tag="TCM_029826" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 1" /protein_id="EOY28189.1" /db_xref="Phytozome:POPTR_0011s05550.1" /db_xref="TAIR:AT2G33835.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3I2" /translation="MPLSTSAVVARAEKDDERRATSTTEREINSSDMEIDDNDDDEEE GDLQGSSNRNDASNIMESKGHNGCLESGSFSPGKSETRVPSKSLAFSSLLNEPLKTQK EDICANYEDSKYPISGKQPAKEKATQQDVVSEKDARVILQRKAPEDHCEQQSNSKSHS VIGEIHSSVAGKEVVITIPVRYHSGGVNDVKGFKEKSKQMNLQSDDDKRRIKSRSAAP QTSTGSLSPGAELDSGSKRPALICDFFARGWCIKGSSCRFLHIKDSGNNPRQQPEVDV ATADAKGAVQLDEGFDNAAERSSSPGSTDTLPSSVKNKTALSSHFFSERVLPSGHDEN QRLHPFHEINKFPLLQSKDKLMGTSPASQQFSASIDDLGPSKDVRQNSIGQNLPADSY TKPASLSDRGSSTFRNSFLPEYRSSLSGSVTSLGITYSENRSYRVSTWMGSFPFGSSL SACSLGAQKVLDGDREHHTSRLSSLLQSSSPFSRSEPDNFPLNDIARDPLHVTDFRIK ISSDDWEPSVPFRPSFFVTSSISPPRGQYNPLCDSIDMSNAGKRSLKFSFSSQGPSLL NVAYPPTYGDSASTGPVVTECNGDKKIASCHNRYPESLFNNNCHNSGKDSLTTDANDG TSAADMQNGTLVKEEISSVASHVKDISKANKIDTDLDGRHQRDGSRCKKDLKVDRVRE KNEIEVEHKADGDPQKESKAMKHFRAALVDLIKELLKPTWREGHLNRDAHNTIVKKAV DKVLGTVQPHQIPITFESVKQYLSSSQPKIAKLVQGYVDKYSKS" gene 24506568..24507939 /locus_tag="TCM_029827" /note="dbxref CacaoGD:Thecc1EG029827" mRNA join(24506568..24506704,24506839..24507183, 24507288..24507939) /locus_tag="TCM_029827" /product="Uncharacterized protein" /note="quality class is strong-utrpoor, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.83 coverage" CDS join(24507086..24507183,24507288..24507396) /locus_tag="TCM_029827" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28190.1" /translation="MFFDWETFFRCWYQRGKHIDCFQMTTFEMIKERLRNDKFDPNRR KPCSILMALFSQESRTTSYLSSGL" gene <24508569..24510086 /locus_tag="TCM_029828" /note="dbxref CacaoGD:Thecc1EG029828" mRNA join(<24508569..24508826,24508933..24509146, 24509425..24509529,24509701..24509841) /locus_tag="TCM_029828" /product="Dormancy-associated protein-like 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011325" /inference="similar to AA sequence:TAIR:AT1G28330.5" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00279t00002; inference alignment:Newbler:10:TSA:cgbaP2_g00279t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16743t2" CDS join(<24508571..24508826,24508933..24509146, 24509425..24509497) /locus_tag="TCM_029828" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Dormancy-associated protein-like 1 isoform 2" /protein_id="EOY28192.1" /db_xref="TAIR:AT1G28330.5" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HWK9" /translation="KEKLKKNYWRERDISAKPSSIYDQIEPSAKNITERRNQQRKRKK KKSKRKMVLLEKLWDDVVAGPQPERGLGRLRKITTQPLTIKDEGEGSKYQRSMSMPAT PGTPATPVTPTTPVSARKENVWRSVFHPGSNLATKSIGAEVFDKPQPNSPTVYDCNQT EVQSQRRKENLAICLVAAWK" mRNA join(24508664..24508826,24508933..24509150, 24509425..24509529,24509631..24510086) /locus_tag="TCM_029828" /product="Dormancy-associated protein-like 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011325" /inference="similar to AA sequence:Phytozome:GSVIVT01021092001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00279t00002" CDS join(24508721..24508826,24508933..24509150, 24509425..24509529,24509631..24509789) /locus_tag="TCM_029828" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Dormancy-associated protein-like 1 isoform 1" /protein_id="EOY28191.1" /db_xref="Phytozome:GSVIVT01021092001" /db_xref="TAIR:AT1G28330.4" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HWK9" /translation="MVLLEKLWDDVVAGPQPERGLGRLRKITTQPLTIKDEGEGSKYQ RSMSMPATPGTPATPVTPTTPVSARKENVWRSVFHPGSNLATKSIGAEVFDKPQPNSP TVYDWYQPNGGSESEKEGKLGYLFGSCVEIILLSRHPCAHMGVDLISGYQLNCTKIKL VGFDDTGFTVGRRGASITADWLVIMTRQLAERLCL" gene complement(24510007..24516343) /locus_tag="TCM_029829" /note="dbxref CacaoGD:Thecc1EG029829" mRNA complement(join(24510007..24510036,24510146..24510877, 24511036..24511236,24511342..24511449,24511684..24512193, 24512376..24512417,24512504..24512624,24512792..24512873, 24513960..24514018,24515723..24515774,24515864..24516065)) /locus_tag="TCM_029829" /product="Ring finger protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011326" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008152t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s05530.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc922t13; alternateUTRof:Thecc1EG029829t1; inference alignment:Newbler:10:TSA:cgbaB_g01731t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16734t1" mRNA complement(join(24510259..24510877,24511036..24511236, 24511342..24511449,24511684..24512193,24512376..24512417, 24512504..24512624,24512792..24512873,24513960..24514018, 24515723..24515774,24515864..24516343)) /locus_tag="TCM_029829" /product="Ring finger protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011326" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008152t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s05530.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01731t00001" mRNA complement(join(24510562..24510877,24511036..24511236, 24511342..24511449,24511684..24512193,24512376..24512417, 24512504..24512624,24513960..24514018,24515723..24515774, 24515864..24516183)) /locus_tag="TCM_029829" /product="Ring finger protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30190.m011326" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008152t1" /inference="similar to AA sequence:ricco:30190.m011326" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01731t00002; inference alignment:Newbler:10:TSA:cgbaB_g01731t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16734t1" mRNA complement(join(24510854..24510877,24511036..24511236, 24511342..24511449,24511684..24512193,24512376..24512419, 24515720..24515774,24515864..24516192)) /locus_tag="TCM_029829" /product="Ring finger protein, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:30190.m011326" /inference="similar to AA sequence:ricco:30190.m011326" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc874t10; inference alignment:Newbler:10:TSA:cgbaB_g01731t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16734t1" CDS complement(join(24510854..24510877,24511036..24511236, 24511342..24511449,24511684..24512193,24512376..24512417, 24512504..24512624,24512792..24512873,24513960..24514018, 24515723..24515774,24515864..24515993)) /locus_tag="TCM_029829" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG008152t1" /codon_start=1 /product="Ring finger protein, putative isoform 1" /protein_id="EOY28193.1" /db_xref="Phytozome:POPTR_0011s05530.1" /db_xref="TAIR:AT5G44280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RBB3" /translation="MPAQKRSSEAAITATSPEDDDPLLLDDRNNHEQHQQETEDAADG FTESDRSPSPCNEEEQEYILVKSADIRKEVQCPICLGIIRKTRTVMECLHRFCRECID KSMRMGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELAFHEEEKARN KQIQASIAQTLRRQSEVVGKKRTVKATASAIVRRSQSRHHGGRKHRTSEPQESDDNEN ANGDGSRDSTSADEHHTEVKPKRSKRWGGRFSHPSSAASADGVGDETDSEVNRESLGV SAPLVWPSERLHWGAGGMRSHTRHGSLNGGNGKNVRNSRLSKLVDCLRNLKEKDDELD IHLMLVSVDEQRIPSLQQPYLCCRPTLLVRQLCQYVALQTALQAREIEIYLVKGSYSM ANMSTFVMTKPGLVDSVRDSLQVLKEEETLAGLGRQRSSHGHLLLAYQKK" CDS complement(join(24510854..24510877,24511036..24511236, 24511342..24511449,24511684..24512193,24512376..24512417, 24512504..24512624,24512792..24512873,24513960..24514018, 24515723..24515774,24515864..24515993)) /locus_tag="TCM_029829" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG008152t1" /codon_start=1 /product="Ring finger protein, putative isoform 1" /protein_id="EOY28194.1" /db_xref="Phytozome:POPTR_0011s05530.1" /db_xref="TAIR:AT5G44280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RBB3" /translation="MPAQKRSSEAAITATSPEDDDPLLLDDRNNHEQHQQETEDAADG FTESDRSPSPCNEEEQEYILVKSADIRKEVQCPICLGIIRKTRTVMECLHRFCRECID KSMRMGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELAFHEEEKARN KQIQASIAQTLRRQSEVVGKKRTVKATASAIVRRSQSRHHGGRKHRTSEPQESDDNEN ANGDGSRDSTSADEHHTEVKPKRSKRWGGRFSHPSSAASADGVGDETDSEVNRESLGV SAPLVWPSERLHWGAGGMRSHTRHGSLNGGNGKNVRNSRLSKLVDCLRNLKEKDDELD IHLMLVSVDEQRIPSLQQPYLCCRPTLLVRQLCQYVALQTALQAREIEIYLVKGSYSM ANMSTFVMTKPGLVDSVRDSLQVLKEEETLAGLGRQRSSHGHLLLAYQKK" CDS complement(join(24510854..24510877,24511036..24511236, 24511342..24511449,24511684..24512193,24512376..24512419, 24515720..24515774,24515864..24515902)) /locus_tag="TCM_029829" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30190.m011326" /codon_start=1 /product="Ring finger protein, putative isoform 4" /protein_id="EOY28196.1" /db_xref="TAIR:AT5G44280.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RBB3" /translation="MNNTSKKPKMLLMVLQNLIAALLLVTKKNKSKELAFHEEEKARN KQIQASIAQTLRRQSEVVGKKRTVKATASAIVRRSQSRHHGGRKHRTSEPQESDDNEN ANGDGSRDSTSADEHHTEVKPKRSKRWGGRFSHPSSAASADGVGDETDSEVNRESLGV SAPLVWPSERLHWGAGGMRSHTRHGSLNGGNGKNVRNSRLSKLVDCLRNLKEKDDELD IHLMLVSVDEQRIPSLQQPYLCCRPTLLVRQLCQYVALQTALQAREIEIYLVKGSYSM ANMSTFVMTKPGLVDSVRDSLQVLKEEETLAGLGRQRSSHGHLLLAYQKK" CDS complement(join(24510854..24510877,24511036..24511236, 24511342..24511449,24511684..24512193,24512376..24512417, 24512504..24512624,24513960..24513976)) /locus_tag="TCM_029829" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30190.m011326; paralog of Thecc1EG008152t1" /codon_start=1 /product="Ring finger protein, putative isoform 3" /protein_id="EOY28195.1" /db_xref="TAIR:AT5G44280.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RBB3" /translation="MPNLPRNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYE EEELAFHEEEKARNKQIQASIAQTLRRQSEVVGKKRTVKATASAIVRRSQSRHHGGRK HRTSEPQESDDNENANGDGSRDSTSADEHHTEVKPKRSKRWGGRFSHPSSAASADGVG DETDSEVNRESLGVSAPLVWPSERLHWGAGGMRSHTRHGSLNGGNGKNVRNSRLSKLV DCLRNLKEKDDELDIHLMLVSVDEQRIPSLQQPYLCCRPTLLVRQLCQYVALQTALQA REIEIYLVKGSYSMANMSTFVMTKPGLVDSVRDSLQVLKEEETLAGLGRQRSSHGHLL LAYQKK" mobile_element complement(24516652..24516778) /note="source:CACAO_Mutator_E161_scaffold_1 5505 5627" /mobile_element_type="transposon:TIR/Mutator" gene 24517884..24523820 /locus_tag="TCM_029830" /note="dbxref CacaoGD:Thecc1EG029830" mRNA join(24517884..24518247,24518349..24518395, 24518489..24518666,24518761..24518808,24518910..24518975, 24519113..24519194,24519599..24519825,24519916..24520019, 24520299..24520384,24520468..24520562,24520649..24521384, 24521897..24522089,24522427..24522518,24522835..24523820) /locus_tag="TCM_029830" /product="Protease-related, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m011327" /inference="similar to AA sequence:Phytozome:POPTR_0004s04650.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc610t17" mRNA join(24517961..24518247,24518349..24518395, 24518489..24518666,24518761..24518808,24518910..24518975, 24519113..24519247,24519634..24519759,24519916..24520019, 24520299..24520384,24520468..24520562,24520649..24522089, 24522427..24522518,24522835..24523774) /locus_tag="TCM_029830" /product="Protease-related, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30190.m011327" /inference="similar to AA sequence:Phytozome:POPTR_0004s04650.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is medium, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:PASA:2:TSA:puevd3b028852t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7243t1" CDS join(24518182..24518247,24518349..24518395, 24518489..24518666,24518761..24518808,24518910..24518975, 24519113..24519194,24519599..24519825,24519916..24520019, 24520299..24520384,24520468..24520562,24520649..24521384, 24521897..24522089,24522427..24522518,24522835..24523100) /locus_tag="TCM_029830" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Protease-related, putative isoform 1" /protein_id="EOY28197.1" /db_xref="Phytozome:POPTR_0004s04650.1" /db_xref="TAIR:AT1G28320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2S3" /translation="MGLPETVDFVRNFSVLVRVQGPDPKGLKMRKHAFHQYHSGKTTL SASGMLLPDTLYNTEVAKCIWDSDGDQNLMLVMTVASVVEPFLTIQHRENLSQGLPEL IPGAQIDIMVEENMGVNLVKGASCWVAARLLKMVDVPRSSRALQSLVEASSGSQEHGW EFDPTRSDVEALFQIEYDKKILMERQRLLVGELSSPSLMARSTTRIAVLGVNLYLNVT FLSLVTLSFLLIYCVTATDMDLPNIGISPLNKRGEFLLAMGSPFGILSPVHFFNSISM GSVANCYPPKSSDRALLMADIRCLPGMEGGPVFGDQNTLVGILIIPLRQKSSDAEIQL VIPWEAIASACSDLLLKEPQIAEKGIHINKGNLNAVGNGLLSNSNGSNELCCYNHDHP NSSCPSRLPIEKAMASICLITIDDGVWASGVVLNDQGLILTNAHLLEPWRFGKTTVGT GTRTEVPFFPPEESASPEGKGFNRYQKSSMPPFSLKIVNSSVVDDHKGNKLKSLYHGH RSIRVRLGHLDPWIWCEAKVVYICRGPLDVALLQLDRIPDKLSSIVVDFAQPSLGSKA YVIGHGLLAPRCGFSPSVCSGVVAKVVKAEMPLYYKSLIPGDSEFPAMLETTAAVHPG GSGGAVVNSDGRLIGLVTSNARHGGGTVIPYLNFSIPSAVLMPIFQFARDMQDLSPLQ NLDQPNEHLSSVWALMPPLSHKPGLPPELPQSLLEDNNNEEGKGSRFAKFIAERNELL KRPAQFGKVERLPNEILPSKL" CDS join(24518182..24518247,24518349..24518395, 24518489..24518666,24518761..24518808,24518910..24518975, 24519113..24519247,24519634..24519759,24519916..24520019, 24520299..24520384,24520468..24520562,24520649..24521554) /locus_tag="TCM_029830" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Protease-related, putative isoform 2" /protein_id="EOY28198.1" /db_xref="Phytozome:POPTR_0004s04650.1" /db_xref="TAIR:AT1G28320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2S3" /translation="MGLPETVDFVRNFSVLVRVQGPDPKGLKMRKHAFHQYHSGKTTL SASGMLLPDTLYNTEVAKCIWDSDGDQNLMLVMTVASVVEPFLTIQHRENLSQGLPEL IPGAQIDIMVEENMGVNLVKGASCWVAARLLKMVDVPRSSRALQSLVEASSGSQEHGW EFGWSLASTHQPSVGSIQTQIEYDKKILMERQRLLVGELSSPSLMARSTTRIAVLGVN LYLNDLPNIGISPLNKRGEFLLAMGSPFGILSPVHFFNSISMGSVANCYPPKSSDRAL LMADIRCLPGMEGGPVFGDQNTLVGILIIPLRQKSSDAEIQLVIPWEAIASACSDLLL KEPQIAEKGIHINKGNLNAVGNGLLSNSNGSNELCCYNHDHPNSSCPSRLPIEKAMAS ICLITIDDGVWASGVVLNDQGLILTNAHLLEPWRFGKTTVGTGTRTEVPFFPPEESAS PEGKGFNRYQKSSMPPFSLKIVNSSVVDDHKGNKLKSLYHGHRSIRVRLGHLDPWIWC EAKVVYICRGPLDVALLQLDRIPDKLSSIVVDFAQPSLGSKAYVIGHGLLAPRCGKSV VYCIYLFVVVLMRNEIILLCLHDTLVELFCFVLDFFIVHVEPSHVKFPILPS" gene 24524132..24526937 /locus_tag="TCM_029831" /note="dbxref CacaoGD:Thecc1EG029831" mRNA join(24524132..24524237,24524554..24524643, 24525254..24525355,24525513..24525617,24525706..24525804, 24525873..24526061,24526158..24526256,24526414..24526937) /locus_tag="TCM_029831" /product="Mitochondrial substrate carrier family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s05500.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s05500.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00271t00002" CDS join(24524136..24524237,24524554..24524643, 24525254..24525355,24525513..24525617,24525706..24525804, 24525873..24526061,24526158..24526256,24526414..24526548) /locus_tag="TCM_029831" /codon_start=1 /product="Mitochondrial substrate carrier family protein" /protein_id="EOY28199.1" /db_xref="Phytozome:POPTR_0011s05500.1" /db_xref="TAIR:AT2G33820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84UC7" /translation="MGESSAPSGYKEYLAGLLAGVATVITGHPFDTVKVKLQKHNTEV HGIKYRNGLHCTARILATEGVRGLYTGATSSFVGVAFESSLLFGIYSQTKQSLQGGVQ STGPQPQVIIPSAAFGGAIISFILCPSELVKCRMQVQGTDSVVPKSCSYSSPLDCALK TIKGDGVTGIFRGGSTTLLRESLGNAVFFSVYEYVRHYLHLQLNTGSFNHSNLINMGI GILSGGLGGVAFWSAVLPLDVAKTIIQTAPDKSSPTNPFQVLNSIYRRAGLRGCYAGL GPTIVRAFPANAAAIVTWELAMKLLEIKND" gene complement(24527373..24530547) /locus_tag="TCM_029832" /note="dbxref CacaoGD:Thecc1EG029832" mRNA complement(join(24527373..24527731,24528487..24528613, 24529792..24530314,24530405..24530547)) /locus_tag="TCM_029832" /product="Squamosa promoter binding protein-like 3" /inference="alignment:exonerate- protein:2:ricco:30190.m011329" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031595t2" /inference="similar to AA sequence:ricco:30190.m011329" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc626t5" CDS complement(join(24528493..24528613,24529792..24530096)) /locus_tag="TCM_029832" /note="dbxref ricco:30190.m011329; paralog of Thecc1EG031595t2" /codon_start=1 /product="Squamosa promoter binding protein-like 3" /protein_id="EOY28200.1" /db_xref="TAIR:AT2G33810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38741" /translation="MATSRAEGKRSLKEMAEDEEEEEDEDAGALGFVDEEKKKKGKRG SSTGGGSALPSCQVENCTTDMNDAKRYHRRHKVCEFHAKAPVVRVSGLQQRFCQQCSR FHELSEFDEAKRSCRRRLAGHNERRRKSSSEYHGEGSNY" gene complement(24528587..24529821) /locus_tag="TCM_029833" /note="dbxref CacaoGD:Thecc1EG029833" misc_feature complement(join(24528587..24529139,24529792..24529821)) /locus_tag="TCM_029832" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021087001.2" /note="Gene fragment of Thecc1EG029832t1; dbxref gnl|CacaoGD|Thecc1EG029832t1; quality class is mediumpartial-partof is thecc1eg029832t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc687t6_C1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc687t6_C1; dbxref CacaoGD:Thecc1EG029833t1" mRNA complement(join(24528795..24529139,24529786..24529811)) /locus_tag="TCM_029833" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021087001.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc626t2; alternateUTRof:Thecc1EG029833t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc687t6_C1" CDS complement(24528902..24529078) /locus_tag="TCM_029833" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY28201.1" /translation="MIKITRAFRCPYPLTNVPSNAKQDDINFLGSSSCTITTIVLHFQ LDYIRIFAGFTCQN" mobile_element 24531581..24531670 /note="source:scaffold_3_CACTA_0384 726 808" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24531619..24531699 /note="source:CACAO_M_E5899_F5_scaffold_2 20741 20810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24531639..24531709) /note="source:CACAO_PIF_E144_scaffold_10 5995 6055" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(24535116..24535129) /note="source:CACAO_PIF_E119_scaffold_3 2642 2693" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 24535130..24535214 /note="source:CACAO_M_E72142_F322_scaffold_10 714 800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24535141..24535238) /note="source:scaffold_1_CACTA_0011 7444 7536" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24535215..24535227) /note="source:CACAO_PIF_E119_scaffold_3 2583 2641" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(24535239..24535267) /note="source:CACAO_M_E34420_F305_scaffold_5 1257 1465" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24539596..24541278 /locus_tag="TCM_029834" /note="dbxref CacaoGD:Thecc1EG029834" mRNA join(24539596..24539887,24540085..24541278) /locus_tag="TCM_029834" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:ricco:30190.m011331" /inference="similar to AA sequence:Phytozome:GSVIVT01021086001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc374t2" CDS join(24539828..24539887,24540085..24541107) /locus_tag="TCM_029834" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY28202.1" /db_xref="Phytozome:GSVIVT01021086001" /db_xref="TAIR:AT1G28310.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3H4" /translation="MLSNCEKMVVISSTTNEWPQNHIDEKDLMASTARLMEKPSQEQQ PQQLQQQQQQQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLR NVPVGGGCRKNKRVKRPASAIDSASPTSGANPNPPSQPQIDVSSSSSHHINPLFYGLA NNPSDMNLPFPRFNSRVSGVETVTGYDLQPQLNALGLGFSSGIVSSDTGDSDYRNGFN VNPTKQIQDVVTSNPLLSSYSNVFGSSSSSTTTTPTIASLLASTLHQHKFMNGGVKNT QAPNPFQALAPFQDLQMTGNSENGLTMKDVKVEEGQNRMEWNLPCQNQLEQIGLSDPA VYWNTTSVAGAWHDPTNIGSSVTSLI" gene 24544014..24545954 /locus_tag="TCM_029835" /note="dbxref CacaoGD:Thecc1EG029835" mRNA join(24544014..24544257,24544997..24545954) /locus_tag="TCM_029835" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.35 coverage" CDS join(24544127..24544257,24544997..24545102) /locus_tag="TCM_029835" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28203.1" /translation="MTSSTMQSKPHTYFLLVVATSGNPKLIFMQLVELKGALDNGLTM LLMVVESSLGKKNGTAAAGRLGLPPCPIAFIDSL" gene complement(24551887..24554276) /locus_tag="TCM_029836" /note="dbxref CacaoGD:Thecc1EG029836" mRNA complement(join(24551887..24553360,24553885..24554276)) /locus_tag="TCM_029836" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04590.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04590.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(24551976..24552950) /locus_tag="TCM_029836" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY28204.1" /db_xref="Phytozome:POPTR_0004s04590.1" /db_xref="TAIR:AT5G60850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2S7" /translation="MQQDRGGGVSDQDMKQNQQQDRRLKPLTGENQQPQQQQQQQHPP QKCPRCESLNTKFCYYNNYSLSQPRYFCKNCRRYWTQGGTLRNVPVGGGCRKGKRTKT SSSGENSRSQPQIPQQQAQQQNLTTPQSMISSNPMIGASTALRTKESGSLASSAAISS MGSYYPGGGFLSSLAAIQSMNQPQPFNQPRNQALSIGGDLGGSSNLGLLQGYSVPSFG SQQHQPIQQTQFFHMGNREKTGNMYPADQEGLIQSSRPAAGSSQQNWHQSFINSSNPT VSEGGLWSINNNSSSTSTAGNTIPSNTSGASSLNPNQWPDLPGYGAPP" gene complement(24553678..24557320) /locus_tag="TCM_029837" /note="dbxref CacaoGD:Thecc1EG029837" mRNA complement(join(24553678..24553941,24556144..24556572, 24556659..24556961,24557021..24557055,24557127..24557320)) /locus_tag="TCM_029837" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021084001" /inference="similar to AA sequence:ricco:30190.m011335" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01334t00002" CDS complement(join(24556233..24556572,24556659..24556927)) /locus_tag="TCM_029837" /note="dbxref ricco:30190.m011335" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28205.1" /translation="MAYRGKDYSSSSDEEAKMAYVDEDDSEAAIERGKEQAREAKEKA KEYAHKTKEKTKETAESAAEKAKEVTNRAAETAQSTKEKAKQKANEICAGYQEEGTEK SSQTAYELKEKAREKAHGVKEKTQEISGSVATKTLETVQSIGEKAKQTVQGAWDAAKG TTQKIKETLVGKNEEEVEVKRMGDDVVELRTRARREDGERKY" mobile_element 24557589..24558600 /note="source:CACAO_on_E683_scaffold_9 1322 2302" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 24560507..24566660 /locus_tag="TCM_029838" /note="dbxref CacaoGD:Thecc1EG029838" mRNA join(24560507..24560723,24562286..24562460, 24562903..24562968,24563319..24563924,24564059..24564133, 24564630..24564730,24564838..24564884,24564990..24565063, 24565776..24566660) /locus_tag="TCM_029838" /product="AP2/B3-like transcriptional factor family protein, putative" /inference="alignment:exonerate- protein:2:ricco:30190.m010868" /inference="similar to AA sequence:ricco:30190.m010868" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc3203t1" CDS join(24560662..24560723,24562286..24562460, 24562903..24562968,24563319..24563924,24564059..24564133, 24564630..24564730,24564838..24564884,24564990..24565063, 24565776..24566249) /locus_tag="TCM_029838" /note="dbxref ricco:30190.m010868" /codon_start=1 /product="AP2/B3-like transcriptional factor family protein, putative" /protein_id="EOY28206.1" /db_xref="TAIR:AT1G28300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PFR7" /translation="MTWRLFSIVPLQTENCDLLCKLNLRAALDMASEWQCSGADNGHC EVKQTAKTTLKDADIPSSISASLPYDSPFHELLVTDEPKTATFNPKVAPTLSQALSVM ENSYTPFTPTTTTTTNTTLRQPDMGWSQNSEFSIYEPMNLKNFSSTPFSTASNSQFHH PPQFVAPSQSLQPPYRHPIEQAGHSLAYPMYPFFLGQNGIEYGVSSSIHANNGVQGSC FMQTDGLSKEQERRIMDPYRTKVARIKRKLARQRSLSLQRNASSGASTQVDARRLTSS GADNSTDVNNSNDTKRDLYKFCTPDNKRLRVLLRKELKNSDVGSLGRIVLPKREAEGN LPTLSDKEGIQVMIKDVYSNQVWTLKYKFWSNNKSRMYVLENTGDFVKQNGLEIGDSL TLYEDESKNLGEQYFSIIKLERIIAANPPSNHQHSDNENNYYSNNDHHHMYLPFTCQS RDEEETSLELLIEQLKHKEQQETNDLMSLPMDAAYSHRLPEEAKSFLSDADGVASMET YTPIAATTLQTSSTLLRGKAKSVDDFQLNNFDDCYGGLDMLPDVNHYNFSL" gene 24566933..24569388 /locus_tag="TCM_029839" /note="dbxref CacaoGD:Thecc1EG029839" mRNA join(24566933..24568066,24568884..24569388) /locus_tag="TCM_029839" /product="Ribosomal protein S5 family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g24640.1" /inference="similar to AA sequence:ricco:30190.m010917" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16969t1" CDS join(24567405..24568066,24568884..24569133) /locus_tag="TCM_029839" /note="dbxref ricco:30190.m010917" /codon_start=1 /product="Ribosomal protein S5 family protein" /protein_id="EOY28207.1" /db_xref="TAIR:AT2G33800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P93014" /translation="MAATAAAAAPALSSLSSLTVRTPTPPFSFVFPGPLKPFSLSRSF PSLSLIAHAKASDIDTSFFDNVNPEEDVVFDPPTPPEGFTPPPSFDDGPDETEDEIAA AYEELYGPAYSGFSVLGNDVYVMDSKVKKTSAFGKVKKEKVRDGFEERVVQVRRVTKV VKGGKQLHFRAIVVVGDKQGQVGVGVGKAKEVIAAVQKSAVNARRNLITVPMTKYLTF PHRSEGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQIGSKNALNNARA TVVAVQKMRQFRDVAQERGIPMEELWK" gene complement(24570068..24573113) /locus_tag="TCM_029840" /note="dbxref CacaoGD:Thecc1EG029840" mRNA complement(join(24570068..24570916,24571139..24571501, 24571590..24572036,24573071..24573113)) /locus_tag="TCM_029840" /product="ADP/ATP carrier 3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029841t1" /inference="similar to AA sequence:Phytozome:Sb01g048660.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage" CDS complement(join(24570569..24570916,24571139..24571501, 24571590..24572015)) /locus_tag="TCM_029840" /note="paralog of Thecc1EG029841t1" /codon_start=1 /product="ADP/ATP carrier 3" /protein_id="EOY28208.1" /db_xref="Phytozome:Sb01g048660.1" /db_xref="TAIR:AT4G28390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HBF2" /translation="MEHGPMHPSVSQKIHWQPDLPVRHFNYTPRMQNIHVDGALVNRK SSSIVTPLPPAFAGAPLENLKDPVLIDLAATGIVRTAVAPFERVKLLMQNQNGMIRSG RLPQPYNGIFDCFARTIRKEGILSLWRGNIAIATAYVSSKAIHYKSYEYFASRIDSSW SIFEVVAAGGFSTAANLFLVYPLVYAGTRMANDVKTANDVKTAGYSSKRQFNGILDVY RKTLKVDGISGLFRGYTMALAQVGVITALSALLRPWYQYLSIQSQNNDLGKAILDCVF DCSGSLASYPLGTVSRRMMMTSGEAVKYKSSRNAFAQIFKTEGVESFYKGAGADILVS VAFKGYALLLSHLYAAYFAAMANGGDGGRPGFALSIKWKKDGVK" gene complement(24573717..24576553) /locus_tag="TCM_029841" /note="dbxref CacaoGD:Thecc1EG029841" mRNA complement(join(24573717..24574447,24574636..24574980, 24575069..24575509,24576261..24576553)) /locus_tag="TCM_029841" /product="ADP/ATP carrier 3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029840t1" /inference="similar to AA sequence:ricco:29983.m003162" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc3018t1" CDS complement(join(24574115..24574447,24574636..24574980, 24575069..24575509,24576261..24576320)) /locus_tag="TCM_029841" /note="dbxref ricco:29983.m003162; paralog of Thecc1EG029840t1" /codon_start=1 /product="ADP/ATP carrier 3" /protein_id="EOY28209.1" /db_xref="TAIR:AT4G28390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P40941" /translation="MRTCISFSNYCSPFLQESNRAKKVNCRMEYGPMHPPVSQKIHWQ PDLPVRHFNYTPRMQHIHGDGALVNRKSSSVVTPLPPAFVGAPLERPSIQTELAVSGI LRTAVAPFERVKLLMQNQNEMIKSGRLTQPYNGIFDCFARTIRNEGIRSLWRGNIATA TAHVSAKAIQFKIQEYFRSHADSRWSTFQIVSAVVLSSAVNLFLVYPFLYAGTRMAND VKTTGDLSKRQFNGILDVYRKTLKVDGIAGLFRGYTMALAQLGMVTVLSAPLKPWHQS LLNQTQTNYLGRAIINCGYHLTGSLASYPLDTVTRRMMMTKYKSSRNAFAQIFKTEGF KSFYKGAGASILVSAVFNVSAVSLFHLYDVYHAAMANRGDGSQPGFAISFRWKRDGDK " gene complement(24577289..24585353) /locus_tag="TCM_029842" /note="dbxref CacaoGD:Thecc1EG029842" mRNA complement(join(24577289..24577676,24578086..24578283, 24578374..24578490,24579024..24579179,24579415..24579564, 24579645..24579754,24580192..24580339,24580520..24580573, 24580717..24580782,24581134..24581307,24581500..24581549, 24581797..24581902,24581989..24582034,24582395..24582564, 24582648..24582763,24583222..24583319,24583474..24583538, 24583652..24583744,24584879..24585353)) /locus_tag="TCM_029842" /product="LisH dimerization motif,WD40/YVTN repeat-like-containing domain isoform 1" /inference="alignment:exonerate-protein:2:frave:gene02373" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030294t1" /inference="similar to AA sequence:ricco:30190.m010867" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2268t1" mRNA complement(join(24577289..24577676,24578086..24578283, 24578374..24578490,24579024..24579179,24579415..24579564, 24579645..24579754,24580192..24580339,24580520..24580573, 24580717..24580782,24581134..24581307,24581500..24581549, 24581797..24581930,24582395..24582516)) /locus_tag="TCM_029842" /product="LisH dimerization motif,WD40/YVTN repeat-like-containing domain isoform 2" /inference="alignment:exonerate-protein:2:frave:gene02373" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030294t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04540.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2872t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2268t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7208t1" CDS complement(join(24577530..24577676,24578086..24578283, 24578374..24578490,24579024..24579179,24579415..24579564, 24579645..24579754,24580192..24580339,24580520..24580573, 24580717..24580782,24581134..24581307,24581500..24581549, 24581797..24581902,24581989..24582034,24582395..24582564, 24582648..24582763,24583222..24583319,24583474..24583508)) /locus_tag="TCM_029842" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m010867; paralog of Thecc1EG030294t1" /codon_start=1 /product="LisH dimerization motif,WD40/YVTN repeat-like-containing domain isoform 1" /protein_id="EOY28210.1" /db_xref="TAIR:AT2G32700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RBC4" /translation="MASSDGWDAEKMLDLYLHDYLMKKNMHETATAFRKEAGISNHSV VIDSPQGLLQEWWSVFYDIFASRLPKHQEYSEAETSANKAEILENQSLNLRSILTPSM ISQQRPGPVLIPRDFDSSLRFLEANQLMLPSSFAGSSSRQQQQINFAQHQVKREHSQG ITLGRTIPVNPLTPYGAQKGILPATGPDTAGLNDSINLAPINGWPLDASNYQQQLQIL KSQPEISAQGLSHMPRNLTPTFPGSSAKFNYRNTILPKTEIKGNNRQMMIQTMQTEEQ QNQHNMLQQQQTSRKKKKVLHSRVPDKKLDCIKAEENKPVDDAVESFLSHDHDNVVST STPFSVLRHRSNPSNEIEQKGFTFGEVSCLHSSKSKVLCCHFSSDGKFLASAGHEKKV LIWNMETLDFVRTSEGHSLLITEVRFRPSSTIFATSSFDKTVKIWDSTKPSKSLCKLV GHAEQVLSLDFHPRKMDLLCSCDSNNEMRLWNVNQRSCMHVSKGATKQVRFQPQLGKL IAAASGNVVNVIDVETDKPQFCLKGHNKEVLSICWDPSGDYIASVSEDSARLWSMIDG ECIHELCSTGNKFQSCTFHPVYSLLLVIGGYQSLELWNPLESNKTWTVEAHRGLISSL ADSLQTEMVASASHDQCVKLWK" CDS complement(join(24577530..24577676,24578086..24578283, 24578374..24578490,24579024..24579179,24579415..24579564, 24579645..24579754,24580192..24580339,24580520..24580573, 24580717..24580782,24581134..24581307,24581500..24581549, 24581797..24581930,24582395..24582510)) /locus_tag="TCM_029842" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030294t1" /codon_start=1 /product="LisH dimerization motif,WD40/YVTN repeat-like-containing domain isoform 2" /protein_id="EOY28211.1" /db_xref="Phytozome:POPTR_0004s04540.1" /db_xref="TAIR:AT2G32700.6" /translation="MISQQRPGPVLIPRDFDSSLRFLEANQLMLPSSFAGSSSKYKMF INVQEHSQGITLGRTIPVNPLTPYGAQKGILPATGPDTAGLNDSINLAPINGWPLDAS NYQQQLQILKSQPEISAQGLSHMPRNLTPTFPGSSAKFNYRNTILPKTEIKGNNRQMM IQTMQTEEQQNQHNMLQQQQTSRKKKKVLHSRVPDKKLDCIKAEENKPVDDAVESFLS HDHDNVVSTSTPFSVLRHRSNPSNEIEQKGFTFGEVSCLHSSKSKVLCCHFSSDGKFL ASAGHEKKVLIWNMETLDFVRTSEGHSLLITEVRFRPSSTIFATSSFDKTVKIWDSTK PSKSLCKLVGHAEQVLSLDFHPRKMDLLCSCDSNNEMRLWNVNQRSCMHVSKGATKQV RFQPQLGKLIAAASGNVVNVIDVETDKPQFCLKGHNKEVLSICWDPSGDYIASVSEDS ARLWSMIDGECIHELCSTGNKFQSCTFHPVYSLLLVIGGYQSLELWNPLESNKTWTVE AHRGLISSLADSLQTEMVASASHDQCVKLWK" mobile_element 24584798..24584869 /note="source:scaffold_9_CACTA_0942 5301 5373" /mobile_element_type="transposon:TIR/CACTA" gene complement(24585190..24587371) /locus_tag="TCM_029843" /note="dbxref CacaoGD:Thecc1EG029843" mRNA complement(join(24585190..24585754,24585855..24585912, 24586008..24586053,24586220..24586280,24586854..24587011, 24587136..24587371)) /locus_tag="TCM_029843" /product="Nuclear control of ATPase protein 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g31820.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400051738" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00892t00002" CDS complement(join(24585754,24585855..24585912, 24586008..24586053,24586220..24586280,24586854..24587011, 24587136..24587324)) /locus_tag="TCM_029843" /codon_start=1 /product="Nuclear control of ATPase protein 2" /protein_id="EOY28212.1" /db_xref="Phytozome:PGSC0003DMP400051738" /db_xref="TAIR:AT1G28250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2T4" /translation="MSICQIELAVSPLIKASAFLLPGSQPEDLKILNQTQMEKKQSAR GDISSAQAVLLGALAPGVNGPTWNTLKTAFLMLGLCLAVMFGLAFSSSDSTLILHVAF LVLITITLFLLLDWWQLGLNLQLHHCPVLMPHSMQVIGCIGIWPLLQEQGFLNRLVWF LLNVKCKRWT" gene complement(24587635..24593428) /locus_tag="TCM_029844" /note="dbxref CacaoGD:Thecc1EG029844" mRNA complement(join(24587635..24589955,24590102..24590310, 24590425..24590547,24590692..24591282,24591382..24591518, 24593043..24593428)) /locus_tag="TCM_029844" /product="Telomerase activating protein Est1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04510.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s05360.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7253t3" CDS complement(join(24587888..24589955,24590102..24590310, 24590425..24590547,24590692..24591282,24591382..24591444)) /locus_tag="TCM_029844" /codon_start=1 /product="Telomerase activating protein Est1, putative" /protein_id="EOY28213.1" /db_xref="Phytozome:POPTR_0011s05360.1" /db_xref="TAIR:AT1G28260.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3G8" /translation="MSSTLAVPLKDQKEKANFLLEIAKTEKQLWALIHSKGLLRSDVR DLYHKVCLSYESFILSDQELIELQDVEYSLWKLHYKHIDEFRKRTKRSSANSESVTSV MAPSCADDKHVEGFKSFLLKATEFYKNLIVKIRSHYGLPQESSLYKSGGSAASVEPKK LQKCHFLCHRFLVCLGDLARYMEQYDKSGVQKHNWSVAATYYLEATTIWPDSGNPQNQ LAVLATYVGDEFLALYHCVRSLAVKEPFPDAQNNLILLFERSRSSHLHTLLSEAQFDF LKPSERSDASVKSRSSRNISDCCLLKGEHDHSAEMNFWPLLIRTLSFFFLKSSLEDFP CAFASTMRELDMMMVLDDMKLRAMLESYQLMDSARTGPFRALQAVSIFIFVFHYLINS PEIKGSKDGKSKQHLEKIQLALTATFIFMGRLVDRCLKANLLDSCPLLPTVLVFVEWL VSILDEVEPYGVDDKTTSSISYFFDTFIDLLKQFNVSVGVLSHERAALWEDYELRGFA PLVQIHVSLDFSTNWDHIDSYESGIACRIQRIINAAMKIADRSNGSYKWIAYDSSGRK FYAKDTNVMPERPESGKVGSTSSDVNVKGVHSHIDEATKECRTQIANENESNHAMNGK AVVMEEEEVILFKPLTRYNSAPLYGLRNNAKDPASPKEMEENVPSDECLRRATSLLIA QNQAHGDASDFHSDISNFSRSKPFKQQEPFVKDTTAFSFSEVPVSAGPPSLSAWVLNR GILSSTEEGRSDMSRQGLSPIDEIATPSLSGLSIWQTVDSVSSSRSEASTNHYSPPPY SAPVPSAPLLPDDAAWYNGTQSSISEVKGSGYISKPGNFYDASRVSGYPNWSPDGELN YGSAIPGFMEKYPPPFRGMTSSEWLRQFRESRNLVRANNHVSPINFFAPGNPRNFPTP DASRFGLFDQYGVPSVSNPTVNTESSIVHPGFPLAYGVDDQRREKLFHGYQRPSPYGC GAVTELRDEPQPLLQYLKEREWLLQQDPTLRNPTIWENKTCKSNR" mobile_element 24591006..24591049 /note="source:scaffold_6_CACTA_0710 16587 16631" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24594560..24595751) /note="source:scaffold_5_CACTA_0614 1494 2646" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24596106..24597099) /note="source:CACAO_hAT_E1920_scaffold_4 1 1029" /mobile_element_type="transposon:TIR/hAT" gene 24598886..24599668 /locus_tag="TCM_029845" /note="dbxref CacaoGD:Thecc1EG029845" mRNA 24598886..24599668 /locus_tag="TCM_029845" /product="Ralf-like 4, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008135t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04480.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g14049t00001" CDS 24599044..24599397 /locus_tag="TCM_029845" /note="paralog of Thecc1EG008135t1" /codon_start=1 /product="Ralf-like 4, putative" /protein_id="EOY28214.1" /db_xref="Phytozome:POPTR_0004s04480.1" /db_xref="TAIR:AT1G28270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZA0" /translation="MGSKVWLVFLLLALAMVAESTTFHEASWGLTHFGNDELSSCIDG QCDVEDVSQTLMDSEINRRQLAQKRYISYGALKANSVPCNRRGNSYYNCQNRKRANPY NRGCSAITHCYRYTS" mobile_element 24599918..24600027 /note="source:CACAO_M_S_E90022_F9_scaffold_8 3123 3201" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24601080..24602524) /locus_tag="TCM_029846" /note="dbxref CacaoGD:Thecc1EG029846" mRNA complement(join(24601080..24602203,24602280..24602524)) /locus_tag="TCM_029846" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.42 coverage" CDS complement(join(24602011..24602203,24602280..24602407)) /locus_tag="TCM_029846" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28215.1" /translation="MAKAALRLAVKERVDNWARNLDSFVLFFLCEGKKGCQGRQAILT STVSTSSNCGLGCSMQQFIVYHLGLVGRSTIRGHYGKNVTIGYEMGPIQSCHLMQLFN TEKF" mobile_element complement(24602441..24602525) /note="source:scaffold_5_CACTA_0596 1759 1843" /mobile_element_type="transposon:TIR/CACTA" gene complement(24602683..24604298) /locus_tag="TCM_029847" /note="dbxref CacaoGD:Thecc1EG029847" mRNA complement(join(24602683..24603098,24603206..24604298)) /locus_tag="TCM_029847" /product="VQ motif-containing protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G28280.1" /inference="similar to AA sequence:ricco:30190.m010871" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7396t1" CDS complement(join(24602911..24603098,24603206..24603932)) /locus_tag="TCM_029847" /note="dbxref ricco:30190.m010871" /codon_start=1 /product="VQ motif-containing protein" /protein_id="EOY28216.1" /db_xref="TAIR:AT1G28280.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RBC8" /translation="METSPRPSPNPNFLASPKSHSPNSSTSSTSSSNNTNPPPPTPPA QQPKPITRCESANPYPTTFVQADTSSFKQVVQMLTGSSETAKLASSTKPNTSAQSDPN PKTHIPPIKSIPKNKQNSGFRLYERRSSLKNLKINPLNPVFGSNNSGFSPRKPEILSP SILDFPSLALSPVTPLIPDPFDRSGPGNYTNCFNNNAKLDKEAEEKAIKEKGFYLHPS PASTPRDSEPRLLPLFPVTSPRVSVKMGNRKGRGKTRDNICNVGYFERNEEKIFASIV KFYACFDFYFPSLLCLYARKFELRTIRK" gene complement(24608955..24610953) /locus_tag="TCM_029848" /note="dbxref CacaoGD:Thecc1EG029848" mRNA complement(join(24608955..24609529,24610131..24610953)) /locus_tag="TCM_029848" /product="Pollen Ole e 1 allergen and extensin family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007286001" /inference="similar to AA sequence:ricco:30190.m010872" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16961t1" CDS complement(join(24609234..24609529,24610131..24610815)) /locus_tag="TCM_029848" /note="dbxref ricco:30190.m010872" /codon_start=1 /product="Pollen Ole e 1 allergen and extensin family protein, putative" /protein_id="EOY28217.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C8YQU7" /translation="MGFAAAAKAVLLLQLSLLLVSSFRVSGQILPEALPPHYHEGSHQ PISPVMAPSPPPSHHHHHHHPHPHPHPHPPTPPPTKPPSHPPKAPTPAPVYPPPKPPT KPPTYAPPKPPVQPPTKPPTYAPPKPPVQPPTYPPKPPVHPPTKPPTQPPTKPPVYPP VKPPTKPPTHPPTKPPVHPPTYPPSHPPAKPPTYPKPSRSLVAVQGVVYCKSCKYAGV DTLLGAKPIFGAIVKLTCKNTKYKQVVQAKTDKNGYFFLEAPKSITSFGAHKCTVSLV SSPLASCSKPSNLNNGLQGATLKPEKPFIANKLPFILYSVGPFAFEPKCY" gene complement(24611016..24617797) /locus_tag="TCM_029849" /note="dbxref CacaoGD:Thecc1EG029849" mRNA complement(join(24611016..24611036,24614882..24615481, 24615962..24617797)) /locus_tag="TCM_029849" /product="Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m010873" /inference="similar to AA sequence:ricco:30190.m010873" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01608t00001" gene 24613828..24614790 /locus_tag="TCM_029850" /note="dbxref CacaoGD:Thecc1EG029850" mRNA 24613828..24614790 /locus_tag="TCM_029850" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.51 coverage" gene complement(24613867..24614628) /locus_tag="TCM_029851" /note="dbxref CacaoGD:Thecc1EG029851" mRNA complement(24613867..24614628) /locus_tag="TCM_029851" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage" CDS 24613980..24614231 /locus_tag="TCM_029850" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28221.1" /translation="MIFMTRGKNSYKKVRLDSIPKWQTTTMRTLAAATSHSYFLPLSV LCCMILSQNSLNFRLIYGCESFFLSNEKFLPPRSHYHFQ" CDS complement(24614325..24614600) /locus_tag="TCM_029851" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28222.1" /translation="MSENYCPPPTVWVFELAIISELCKVWPIFGRGGKGKEEKAKKAD LVEICKTVGHRAGEGMRNQCIELWAQIQSKAAESEKWFIVIKHWSVL" mRNA complement(join(24614751..24615237,24615962..24617794)) /locus_tag="TCM_029849" /product="Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m010873" /inference="similar to AA sequence:ricco:30190.m010873" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7367t2; alternateUTRof:Thecc1EG029849t1; inference alignment:Newbler:10:TSA:cgbaB_g01608t00001" mRNA complement(join(24614751..24615237,24615415..24615481, 24615962..24617794)) /locus_tag="TCM_029849" /product="Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) isoform 1" /inference="alignment:exonerate- protein:2:ricco:30190.m010873" /inference="similar to AA sequence:ricco:30190.m010873" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7367t1; alternateUTRof:Thecc1EG029849t1; inference alignment:Newbler:10:TSA:cgbaB_g01608t00001" CDS complement(24615964..24617706) /locus_tag="TCM_029849" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30190.m010873" /codon_start=1 /product="Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) isoform 1" /protein_id="EOY28218.1" /db_xref="TAIR:AT4G20980.4" /db_xref="UniProtKB/TrEMBL:UniRef50_P56820" /translation="MVGGFEVGAVPFNPDGWGPPDSVTTAPTTTTLPLHVPFAPFSRS EKLGRIADFTRSFPSSNANPSNRPSSAKPGGANSSDAPFDFSLDLDAFPLANPDDDSS FRLVDAKPPPRPKFGPKWRFNQHRPQLPQRRDEEVEARKREAEKERARRDRLYNLNRS NQNQPRREAAIFKSSVDIQPEWNMLDQIPFSTFSKLSFSVPEPEDLLLCGALEYYDRS FDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDTILATLMCAPRS VYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKDDINSAYSLSVEAAYI NQNFSQQVLVRDGNKVSFDEPNPFANEGDEVASVAYRYRRWKLDNDMYLVARCEVQSV VEVNKQKSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQAL LASADLMKLGYVSRVHPRDHFNHVILAVVGYKPRDFAAQINLNTANMWGIVKSIVDLC MKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPTEDAEGGEANG TTNDVEDKDIETQN" CDS complement(24615964..24617706) /locus_tag="TCM_029849" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m010873" /codon_start=1 /product="Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) isoform 1" /protein_id="EOY28219.1" /db_xref="TAIR:AT4G20980.4" /db_xref="UniProtKB/TrEMBL:UniRef50_P56820" /translation="MVGGFEVGAVPFNPDGWGPPDSVTTAPTTTTLPLHVPFAPFSRS EKLGRIADFTRSFPSSNANPSNRPSSAKPGGANSSDAPFDFSLDLDAFPLANPDDDSS FRLVDAKPPPRPKFGPKWRFNQHRPQLPQRRDEEVEARKREAEKERARRDRLYNLNRS NQNQPRREAAIFKSSVDIQPEWNMLDQIPFSTFSKLSFSVPEPEDLLLCGALEYYDRS FDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDTILATLMCAPRS VYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKDDINSAYSLSVEAAYI NQNFSQQVLVRDGNKVSFDEPNPFANEGDEVASVAYRYRRWKLDNDMYLVARCEVQSV VEVNKQKSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQAL LASADLMKLGYVSRVHPRDHFNHVILAVVGYKPRDFAAQINLNTANMWGIVKSIVDLC MKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPTEDAEGGEANG TTNDVEDKDIETQN" CDS complement(24615964..24617706) /locus_tag="TCM_029849" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30190.m010873" /codon_start=1 /product="Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) isoform 1" /protein_id="EOY28220.1" /db_xref="TAIR:AT4G20980.4" /db_xref="UniProtKB/TrEMBL:UniRef50_P56820" /translation="MVGGFEVGAVPFNPDGWGPPDSVTTAPTTTTLPLHVPFAPFSRS EKLGRIADFTRSFPSSNANPSNRPSSAKPGGANSSDAPFDFSLDLDAFPLANPDDDSS FRLVDAKPPPRPKFGPKWRFNQHRPQLPQRRDEEVEARKREAEKERARRDRLYNLNRS NQNQPRREAAIFKSSVDIQPEWNMLDQIPFSTFSKLSFSVPEPEDLLLCGALEYYDRS FDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDTILATLMCAPRS VYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKDDINSAYSLSVEAAYI NQNFSQQVLVRDGNKVSFDEPNPFANEGDEVASVAYRYRRWKLDNDMYLVARCEVQSV VEVNKQKSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQAL LASADLMKLGYVSRVHPRDHFNHVILAVVGYKPRDFAAQINLNTANMWGIVKSIVDLC MKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPTEDAEGGEANG TTNDVEDKDIETQN" gene complement(24620289..24621946) /locus_tag="TCM_029852" /note="dbxref CacaoGD:Thecc1EG029852" mRNA complement(join(24620289..24620633,24620757..24621083, 24621176..24621320,24621769..24621946)) /locus_tag="TCM_029852" /product="Basic helix-loop-helix DNA-binding superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01002788001" /inference="similar to AA sequence:Phytozome:POPTR_0011s05320.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1357t1" CDS complement(join(24620544..24620633,24620757..24621083, 24621176..24621320,24621769..24621887)) /locus_tag="TCM_029852" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein" /protein_id="EOY28223.1" /db_xref="Phytozome:POPTR_0011s05320.1" /db_xref="TAIR:AT4G20970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3G5" /translation="MEVQPNFPPDYADMSSSLSNELYPKTTMILLERGSCIIRSFASQ RITDMEHNPNSSRTDRKLIERNRRNQMKALYSKLNSLIPHHNSRESTSLPDQLGEAAN YIKRLQTNLERMKERKDSLLGVERSMNTSRSSGPRSPQIMIQEMGSSLVIGLTTCSSS QFIFNETIRILHEEGAEIVNASFSVVDDTVFHTIHLTVAESYAPDYGAAARISERLQK FVNDIADA" gene complement(24626318..24629764) /locus_tag="TCM_029853" /note="dbxref CacaoGD:Thecc1EG029853" mRNA complement(join(24626318..24626742,24627421..24627876, 24628083..24629337,24629709..24629764)) /locus_tag="TCM_029853" /product="Tyrosine kinase, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g31700.1" /inference="similar to AA sequence:ricco:30190.m010875" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04739t00001" CDS complement(join(24626458..24626742,24627421..24627876, 24628083..24628838)) /locus_tag="TCM_029853" /note="dbxref ricco:30190.m010875" /codon_start=1 /product="Tyrosine kinase, putative" /protein_id="EOY28224.1" /db_xref="TAIR:AT5G58950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RBD2" /translation="MADDANSWIRRTKFSHTVCHRLDSSRLVSFPFHLQSDRNLEWSL GLKPRSAVASAKQKSVHNDPQIQRNPITNKQRSVSPLPQTILSDTFKEARSERRRFST PNPQRKESDKRFRGKFFHKESHDKKGSNSPASSNSSPLRHLGSIKVQDRSKSRKESAW TKYFDHAGGRVNAVEAADEHTVELSQLFLGLRFAHGAHSRLYHGIYKEEPVAVKIIRV PDDDENGNLAARLEKQFNREVTLLSRLHHPNVIKFVAACRKPPVFCVITEYLSEGSLR AYLHKLDHKSLPMEKLIAIVLEVARGMEYIHSQGVIHRDLKPENVLIDQEFHLKIADF GIACEEAYCDLLADDPGTYRWMAPEMIKKKSYGRKVDVYSFGLILWEMVAGTIPYEDM NPIQAAFAVVNKNLRPVIPHNCPPAMRALIEQCWSLHPEKRPDFWQIVKVLEQFESSL NQDGTLKLVQNPSCQDHKKGLLHWIQKLGPVHPHSNAYSSPMPKPKFT" gene complement(24632468..24633908) /locus_tag="TCM_029854" /note="dbxref CacaoGD:Thecc1EG029854" mRNA complement(join(24632468..24633238,24633355..24633908)) /locus_tag="TCM_029854" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008126t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04420.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06788t00001" CDS complement(join(24632820..24633238,24633355..24633862)) /locus_tag="TCM_029854" /note="paralog of Thecc1EG008126t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28225.1" /db_xref="Phytozome:POPTR_0004s04420.1" /db_xref="TAIR:AT4G32480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3G4" /translation="MAGIATRISWNHRNLTYGCQEFKFPEQTDSSLSDMEFGFLDDGD HPGSCNSDELPGNEMVDEGGELGDNEEKENDESSVENNKSFWESQHQVLQATLCRSSS LESRIRNATKEALKDIQRAGTVCPCGKSMAESCRTCLMREVSGRLQNAGFNSAVCRSK WRSSPDIPSGEHTFLDVIENSRKGDVRVIIELNFRAEFEMARASEDYNRLVQRLPEVF VGKVERLNIVIKILCLAAKKCMKEKKMHMGPWRKHRYMQAKWLKSCERNTLTQSLSVG CSGRLPKPRASMLTVDLLEKLSNKHCTAVEVV" mobile_element 24635629..24635776 /note="source:CACAO_on_S_E46_scaffold_2 494 623" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(24640983..24641054) /note="source:scaffold_1_CACTA_0032 2773 2844" /mobile_element_type="transposon:TIR/CACTA" gene complement(24641127..24644428) /locus_tag="TCM_029856" /note="dbxref CacaoGD:Thecc1EG029856" mRNA complement(24641127..24644428) /locus_tag="TCM_029856" /product="Concanavalin A-like lectin protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01020556001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029857t1" /inference="similar to AA sequence:ricco:30190.m010877" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7296t1" CDS complement(24641755..24643854) /locus_tag="TCM_029856" /note="dbxref ricco:30190.m010877; paralog of Thecc1EG029857t1" /codon_start=1 /product="Concanavalin A-like lectin protein kinase family protein" /protein_id="EOY28226.1" /db_xref="TAIR:AT4G04960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3G3" /translation="MNKHPKPLLFLLLFIILFSQSVLSVDFVFNGFNSTNLSLYGIAS INSRILTLTNETSYVVGRALYRSKIPTKTPNSSQVLPFSTSFIFSMAPSRNKAILPGH GLVFIFTPNTGINGTSSSQHLGLFNLTNNGNPNNHVFGVEFDVFANQEFNDIDDNHAG IDRNSLTSIISHTAGYWPDNIKSSSKSNDSDDEEKGFEELKLNNGKNYQVWIDYADSI INVTMAPVGIKRPKRPLLNVSLNLSDVFEDEMYVGFTSSTGRLVESHRILAWSFSNSN FQLSESLITTGLPSFAIPKTPFYKHKSFIAGVTVGSFFVLVFIALFALFLVKRERRRA RERAEMEDWEFEYWPHKMTYQEIDAATKGFLEEYVIGFGANGKVYKGVSPGGTEIAVK RISHENDGMREFLAEISSLGRLKHRSLVGLKGWCKKEKGTFMLIYDYMENGSLDKRVY YDCDESKMLSCEDRIRILKDVASAVLYLHEGWESKVLHRDIKASNVLLDKDMNGRLGD FGLARMHGHGQVASTTRVVGTVGYLAPEVVRSGRASTQTDVFGFGVLMLEVMCGRRPI EEGKPPLVDWVWQLMVQGELLAAVDARLRASGGFDEEEVEKVMHLGLLCSYPNPNSRP TMRQVVKVLEGKNEPCDSETEDMEAYLLQKVKSRDMWANYSQNFGYSSHPTFDDIRQS HSSSMSLSWTISMVDGR" gene complement(24645865..24649088) /locus_tag="TCM_029857" /note="dbxref CacaoGD:Thecc1EG029857" mRNA complement(24645865..24649088) /locus_tag="TCM_029857" /product="Concanavalin A-like lectin protein kinase family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029856t1" /inference="similar to AA sequence:ricco:30190.m010877" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1366t5_C2" CDS complement(24646739..24648760) /locus_tag="TCM_029857" /note="dbxref ricco:30190.m010877; paralog of Thecc1EG029856t1" /codon_start=1 /product="Concanavalin A-like lectin protein kinase family protein" /protein_id="EOY28227.1" /db_xref="TAIR:AT4G04960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3G3" /translation="MNKHPKHPLFLLLFVILFSQSVLSVDFVFNGFNSANLSLYGIAD IDSRILTLTNETDFVVGRALYRPKIPTKTPNSSHVLPFSTSFIFSMAPSRNKAILPGH GLVFIFTPNTGINGTSSSQHLGLFNLTNNGNQSNHVFGVEFDVFANQEFGDIDDNHVG IDLNSLTSTSSHTAGYWPDNIKSSSNSNDSDDEDKGFKELKLNNGKNYQVWIDYADSV INVTMAPVGIERPKRPLLNVSLNLSDVFEDEMYVGFTSATGRLVQSHRILAWSFSNSN FALSESLITTGLPSFAIPKTPFYKHKSFIAGVTVGIFLILVFFALFALFLVKRERRRA RERAEMEDWEFEYWPHKITYQEIDAATKGFSEKNVIGFGGNGKVYKGVLPGGTEIAVK RISHKNDGMREFLAEISSLGRLKHRRLVVLKGWCKKEKGTFMLIYDYMENGSLDKRVY HDCDESRVLSCEHRIRILKDVASAVLYLHEGWESKVLHRDIKASNVLLDKDMNGRLGD FGLARMHGHGHEASTTRVVGTVGYMAPEVVKSGRASAQTDVFGFGVLILEVMCGRRPI EEGKPPLVDWAWQLMVQGELLAAVDSRLRAKGGFDEEEVEKVMHLALLCSYPDPKSRP TMRQVVNVLEGKNEPFESETEDMKANLLQKVKSMDSWTSYSRNFGYSYC" gene 24654563..24659663 /locus_tag="TCM_029858" /note="dbxref CacaoGD:Thecc1EG029858" mRNA join(24654563..24654835,24655030..24655330, 24655939..24656205,24656328..24656541,24656668..24656777, 24656864..24657063,24657332..24657435,24657673..24657860, 24657951..24658150,24658891..24659482) /locus_tag="TCM_029858" /product="F3H9.11 protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400022706" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031516t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04400.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16794t2" mRNA join(24654677..24655330,24655939..24656205, 24656328..24656541,24656668..24656777,24656864..24657063, 24657332..24657435,24657673..24658150,24658891..24659663) /locus_tag="TCM_029858" /product="F3H9.11 protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400022706" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031516t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04400.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc112t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16794t2" mRNA join(24654677..24655330,24655939..24656205, 24656328..24656541,24656668..24656777,24656864..24657063, 24657332..24657435,24657673..24657860,24657951..24658150, 24658695..24658779,24658891..24658920) /locus_tag="TCM_029858" /product="F3H9.11 protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400022706" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031516t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s05280.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc112t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16794t2" CDS join(24655087..24655330,24655939..24656205, 24656328..24656541,24656668..24656777,24656864..24657063, 24657332..24657435,24657673..24658150,24658891..24659124) /locus_tag="TCM_029858" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG031516t1" /codon_start=1 /product="F3H9.11 protein isoform 5" /protein_id="EOY28232.1" /db_xref="Phytozome:POPTR_0004s04400.1" /db_xref="TAIR:AT1G28240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZ97" /translation="MTGGSLGIRSGSYGSLDKQLQNGVLPIQAPSATRTKPSKMFKEK ETLVHWICKFAGRKKVGMLLLCAISAAVFVWVLYVGKGEDQESDNVPKVNDSLPLNNS GSPLINEVQSVRIDNWTSLPVIVEGTEVRVMPPPPPSYFLGYTLPPGHPCATFSLPPP PADKKRTGPRPCPVCYLPVEDAIALMPKVPSFSPVVKNLTYIYEENLNKETEFGGSDF GGYPTLKQRDDSYDIRESMNVHCGFVKGSKPGHGTGFDIDDNDLLEMEKCHGVVVASA IFGAFDIIQQPKNISEYSKQTICFYMFADEETEADLKANRGLGESKKIGVWRIVVVRN LPYTDGRRNGKIPKLLPHRLFPNARFSLWIDGKLELVADPYQILERFLWRKNATFAIS RHYKRFDVFDEAEANKAAGKYDNASIDFQVDFYKKEGLTPYSEAKLPITSGRVQDACS CFILFGYASFSLMNFALMAGSADVPEGCVIIREHVPISNLFTCLWFNDVDRFTSRDQI SFSTVRDKIAAKTNWSVNMFLDCERRNFVVQKHHKEVLAHLAQMSPPTIYPPPSPLSL ANDPPRLFSLETSGESIVSTPLRKVSPRRGRDKRSGSRRHRKVVRGTDSS" CDS join(24655087..24655330,24655939..24656205, 24656328..24656541,24656668..24656777,24656864..24657063, 24657332..24657435,24657673..24657860,24657951..24658150, 24658891..24659124) /locus_tag="TCM_029858" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG031516t1" /codon_start=1 /product="F3H9.11 protein isoform 1" /protein_id="EOY28228.1" /db_xref="Phytozome:POPTR_0004s04400.1" /db_xref="TAIR:AT1G28240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZ97" /translation="MTGGSLGIRSGSYGSLDKQLQNGVLPIQAPSATRTKPSKMFKEK ETLVHWICKFAGRKKVGMLLLCAISAAVFVWVLYVGKGEDQESDNVPKVNDSLPLNNS GSPLINEVQSVRIDNWTSLPVIVEGTEVRVMPPPPPSYFLGYTLPPGHPCATFSLPPP PADKKRTGPRPCPVCYLPVEDAIALMPKVPSFSPVVKNLTYIYEENLNKETEFGGSDF GGYPTLKQRDDSYDIRESMNVHCGFVKGSKPGHGTGFDIDDNDLLEMEKCHGVVVASA IFGAFDIIQQPKNISEYSKQTICFYMFADEETEADLKANRGLGESKKIGVWRIVVVRN LPYTDGRRNGKIPKLLPHRLFPNARFSLWIDGKLELVADPYQILERFLWRKNATFAIS RHYKRFDVFDEAEANKAAGKYDNASIDFQVDFYKKEGLTPYSEAKLPITSDVPEGCVI IREHVPISNLFTCLWFNDVDRFTSRDQISFSTVRDKIAAKTNWSVNMFLDCERRNFVV QKHHKEVLAHLAQMSPPTIYPPPSPLSLANDPPRLFSLETSGESIVSTPLRKVSPRRG RDKRSGSRRHRKVVRGTDSS" CDS join(24655087..24655330,24655939..24656205, 24656328..24656541,24656668..24656777,24656864..24657063, 24657332..24657435,24657673..24657860,24657951..24658150, 24658695..24658724) /locus_tag="TCM_029858" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG031516t1" /codon_start=1 /product="F3H9.11 protein isoform 3" /protein_id="EOY28230.1" /db_xref="Phytozome:POPTR_0011s05280.1" /db_xref="TAIR:AT1G28240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZ97" /translation="MTGGSLGIRSGSYGSLDKQLQNGVLPIQAPSATRTKPSKMFKEK ETLVHWICKFAGRKKVGMLLLCAISAAVFVWVLYVGKGEDQESDNVPKVNDSLPLNNS GSPLINEVQSVRIDNWTSLPVIVEGTEVRVMPPPPPSYFLGYTLPPGHPCATFSLPPP PADKKRTGPRPCPVCYLPVEDAIALMPKVPSFSPVVKNLTYIYEENLNKETEFGGSDF GGYPTLKQRDDSYDIRESMNVHCGFVKGSKPGHGTGFDIDDNDLLEMEKCHGVVVASA IFGAFDIIQQPKNISEYSKQTICFYMFADEETEADLKANRGLGESKKIGVWRIVVVRN LPYTDGRRNGKIPKLLPHRLFPNARFSLWIDGKLELVADPYQILERFLWRKNATFAIS RHYKRFDVFDEAEANKAAGKYDNASIDFQVDFYKKEGLTPYSEAKLPITSDVPEGCVI IREHVPISNLFTCLWFNDVDRFTSRDQISFSTVRDKIAAKTNWSVNMFLDCERRNFVV QLVPLASLPL" mRNA join(24655301..24655330,24655755..24656205, 24656328..24656541,24656668..24656777,24656864..24657063, 24657332..24657435,24657673..24657860,24657951..24658150, 24658891..24659663) /locus_tag="TCM_029858" /product="F3H9.11 protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400022706" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031516t1" /inference="similar to AA sequence:ricco:30190.m010880" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc112t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16794t2" mRNA join(24655301..24655330,24655755..24655839, 24655939..24656205,24656328..24656541,24656668..24656777, 24656864..24657063,24657332..24657435,24657673..24657860, 24657951..24658150,24658891..24659663) /locus_tag="TCM_029858" /product="F3H9.11 protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400022706" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031516t1" /inference="similar to AA sequence:ricco:30190.m010880" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc112t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16794t2" CDS join(24655821..24655839,24655939..24656205, 24656328..24656541,24656668..24656777,24656864..24657063, 24657332..24657435,24657673..24657860,24657951..24658150, 24658891..24659124) /locus_tag="TCM_029858" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30190.m010880; paralog of Thecc1EG031516t1" /codon_start=1 /product="F3H9.11 protein isoform 2" /protein_id="EOY28229.1" /db_xref="TAIR:AT1G28240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZ97" /translation="MSLARAGEDQESDNVPKVNDSLPLNNSGSPLINEVQSVRIDNWT SLPVIVEGTEVRVMPPPPPSYFLGYTLPPGHPCATFSLPPPPADKKRTGPRPCPVCYL PVEDAIALMPKVPSFSPVVKNLTYIYEENLNKETEFGGSDFGGYPTLKQRDDSYDIRE SMNVHCGFVKGSKPGHGTGFDIDDNDLLEMEKCHGVVVASAIFGAFDIIQQPKNISEY SKQTICFYMFADEETEADLKANRGLGESKKIGVWRIVVVRNLPYTDGRRNGKIPKLLP HRLFPNARFSLWIDGKLELVADPYQILERFLWRKNATFAISRHYKRFDVFDEAEANKA AGKYDNASIDFQVDFYKKEGLTPYSEAKLPITSDVPEGCVIIREHVPISNLFTCLWFN DVDRFTSRDQISFSTVRDKIAAKTNWSVNMFLDCERRNFVVQKHHKEVLAHLAQMSPP TIYPPPSPLSLANDPPRLFSLETSGESIVSTPLRKVSPRRGRDKRSGSRRHRKVVRGT DSS" CDS join(24655905..24656205,24656328..24656541, 24656668..24656777,24656864..24657063,24657332..24657435, 24657673..24657860,24657951..24658150,24658891..24659124) /locus_tag="TCM_029858" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30190.m010880; paralog of Thecc1EG031516t1" /codon_start=1 /product="F3H9.11 protein isoform 4" /protein_id="EOY28231.1" /db_xref="TAIR:AT1G28240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZ97" /translation="MKICIYFGLFTGEDQESDNVPKVNDSLPLNNSGSPLINEVQSVR IDNWTSLPVIVEGTEVRVMPPPPPSYFLGYTLPPGHPCATFSLPPPPADKKRTGPRPC PVCYLPVEDAIALMPKVPSFSPVVKNLTYIYEENLNKETEFGGSDFGGYPTLKQRDDS YDIRESMNVHCGFVKGSKPGHGTGFDIDDNDLLEMEKCHGVVVASAIFGAFDIIQQPK NISEYSKQTICFYMFADEETEADLKANRGLGESKKIGVWRIVVVRNLPYTDGRRNGKI PKLLPHRLFPNARFSLWIDGKLELVADPYQILERFLWRKNATFAISRHYKRFDVFDEA EANKAAGKYDNASIDFQVDFYKKEGLTPYSEAKLPITSDVPEGCVIIREHVPISNLFT CLWFNDVDRFTSRDQISFSTVRDKIAAKTNWSVNMFLDCERRNFVVQKHHKEVLAHLA QMSPPTIYPPPSPLSLANDPPRLFSLETSGESIVSTPLRKVSPRRGRDKRSGSRRHRK VVRGTDSS" gene 24660113..24662590 /locus_tag="TCM_029860" /note="dbxref CacaoGD:Thecc1EG029860" mRNA join(24660113..24660694,24661971..24662049, 24662228..24662590) /locus_tag="TCM_029860" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008120t1" /inference="similar to AA sequence:Phytozome:GSVIVT01005213001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc928t3" CDS join(24660272..24660694,24661971..24662049, 24662228..24662394) /locus_tag="TCM_029860" /note="paralog of Thecc1EG008120t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28233.1" /db_xref="Phytozome:GSVIVT01005213001" /db_xref="TAIR:AT1G53035.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PC13" /translation="MSSTSSSSPSPSSAAFMVICLLHSVIALTSGALMMFHMKEIYTF THGIETATKLLGSTPHDQLLIRTSDSFSGLLLFAIGFLLFMVSFVKDKEFQSFFAKGC TVLHVFMAMWRFWFERRVEDLAWDWLRQTVGDILLALSWVVSTRFSMLTSLVSFSLCL YEFFLVQGSRIASEAREKLKVLSWALCKPKKVVKWKAGASILWRLKQKSLDHLSVTRA VNMD" mobile_element complement(24662373..24662851) /note="source:scaffold_2_CACTA_0239 2655 3164" /mobile_element_type="transposon:TIR/CACTA" gene complement(24663032..24669618) /locus_tag="TCM_029861" /note="dbxref CacaoGD:Thecc1EG029861" mRNA complement(join(24663032..24664379,24664489..24664752, 24664864..24665165,24666726..24666833,24666939..24667024, 24667140..24667466,24667558..24667795,24667886..24668148, 24668653..24669618)) /locus_tag="TCM_029861" /product="Lipoxygenase 3, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29851.m002424" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029865t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16780.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7300t3" mRNA complement(join(24663074..24664379,24664489..24664752, 24664864..24665165,24666726..24666833,24666939..24667024, 24667140..24667469,24667558..24667795,24667886..24668148, 24668653..24669114)) /locus_tag="TCM_029861" /product="Lipoxygenase 3, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29851.m002424" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029865t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s16780.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7300t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7300t3" CDS complement(join(24663623..24664379,24664489..24664752, 24664864..24665165,24666726..24666833,24666939..24667024, 24667140..24667466,24667558..24667795,24667886..24668148, 24668653..24669037)) /locus_tag="TCM_029861" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029865t1" /codon_start=1 /product="Lipoxygenase 3, putative isoform 1" /protein_id="EOY28234.1" /db_xref="Phytozome:POPTR_0001s16780.1" /db_xref="TAIR:AT1G17420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LNR3" /translation="MAGTKEILCSATADMFPSKSLLSNNFIHQQQNSFSPFTSSFNSC KRRVVQLRKVVAVAAAVPMQTLIELDSTKAIPEIPVQFTVTAQVTVKYDAKENMKEMV FNLLDSGANATQRGVFLQLVSTDVDPRTGGPKVSKEAVLDWSRDLHITADKVSHEVQF LVDANFGVPGAILVSNKNQEFYLESITIEGLVHFNCHSWVQPEKLHPDKRVFFSKKAF LPSETPAGLKVLRKEELRQLRGNGEGVRAVSDRIYDYDVYNDLGHPDKGTEHARPILG GQHRPYPRRCRTGRPSTKSDPRAEAPVNESLPMYVPRDEAFGDVKRQTVDAGSWKGMV NNFFPFLKDSSTNGEAITFSEINELYKENSCNESQQKESPKKASFPIKLNKMIKESTA DAFRFDPPNIVSRDASCCLRDDEFGRLTLAGMNPLSIERLKVFPPVSKLDPSLYGPQE SALREEHIIHHLDGMSVQRAMEKNKLFILDYHDTYLPFLNSINAHPDRKAYATRTILF LTQMGTLKPIAIELSLPPMNPYIPSKQVITPPVDATTCWQWQLAKAHVCSNDSGAHEL IQHWLRTHACIEPFIIAAHRHLSVMHPIHKLLRPHMRYTMDINARARELLISAGGIIE SLFSTKEVSMEITSFAYKNWRFDMETLPADLIRRGIAEPDPTEPHGLKLLIEDYPYAN DGLLIWAAIEKLVRDFVTYYYPSAGHIQSDPELNAWYYEFINVGHADIRHESWWPRLS TPEDLVSILTTIIWIASAEHAALNFGQYHYGGYVPVRPSYMRRLVPNEHDPEYATFLA DPEGYFVSSLPSLREMTFLMSVLDILSTHSPDEEYLGDTRDLSTWTGDPEIIEAFYRF SMDMRMVEKEIAKRNADPKLRNRCGAGVSPYELLVPSSKPGVTCRGVPNSVTI" CDS complement(join(24663623..24664379,24664489..24664752, 24664864..24665165,24666726..24666833,24666939..24667024, 24667140..24667469,24667558..24667795,24667886..24668148, 24668653..24669037)) /locus_tag="TCM_029861" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029865t1" /codon_start=1 /product="Lipoxygenase 3, putative isoform 2" /protein_id="EOY28235.1" /db_xref="Phytozome:POPTR_0001s16780.1" /db_xref="TAIR:AT1G17420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LNR3" /translation="MAGTKEILCSATADMFPSKSLLSNNFIHQQQNSFSPFTSSFNSC KRRVVQLRKVVAVAAAVPMQTLIELDSTKAIPEIPVQFTVTAQVTVKYDAKENMKEMV FNLLDSGANATQRGVFLQLVSTDVDPRTGGPKVSKEAVLDWSRDLHITADKVSHEVQF LVDANFGVPGAILVSNKNQEFYLESITIEGLVHFNCHSWVQPEKLHPDKRVFFSKKAF LPSETPAGLKVLRKEELRQLRGNGEGVRAVSDRIYDYDVYNDLGHPDKGTEHARPILG GQHRPYPRRCRTGRPSTKSADPRAEAPVNESLPMYVPRDEAFGDVKRQTVDAGSWKGM VNNFFPFLKDSSTNGEAITFSEINELYKENSCNESQQKESPKKASFPIKLNKMIKEST ADAFRFDPPNIVSRDASCCLRDDEFGRLTLAGMNPLSIERLKVFPPVSKLDPSLYGPQ ESALREEHIIHHLDGMSVQRAMEKNKLFILDYHDTYLPFLNSINAHPDRKAYATRTIL FLTQMGTLKPIAIELSLPPMNPYIPSKQVITPPVDATTCWQWQLAKAHVCSNDSGAHE LIQHWLRTHACIEPFIIAAHRHLSVMHPIHKLLRPHMRYTMDINARARELLISAGGII ESLFSTKEVSMEITSFAYKNWRFDMETLPADLIRRGIAEPDPTEPHGLKLLIEDYPYA NDGLLIWAAIEKLVRDFVTYYYPSAGHIQSDPELNAWYYEFINVGHADIRHESWWPRL STPEDLVSILTTIIWIASAEHAALNFGQYHYGGYVPVRPSYMRRLVPNEHDPEYATFL ADPEGYFVSSLPSLREMTFLMSVLDILSTHSPDEEYLGDTRDLSTWTGDPEIIEAFYR FSMDMRMVEKEIAKRNADPKLRNRCGAGVSPYELLVPSSKPGVTCRGVPNSVTI" mobile_element 24665506..24666629 /note="source:INTACT639F_F363_scaffold_5-int 7469 8546" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24670007..24670195 /note="source:CACAO_on_E48_scaffold_6 2395 2564" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24670026..24670678) /note="source:scaffold_4_CACTA_0511 13137 13816" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24670605..24670708 /note="source:CACAO_on_E69_scaffold_9 806 909" /mobile_element_type="transposon:TIR/hAT" gene complement(24672631..24676796) /locus_tag="TCM_029862" /note="dbxref CacaoGD:Thecc1EG029862" mRNA complement(join(24672631..24672893,24673097..24673903, 24674014..24674280,24674363..24674664,24675064..24675171, 24675297..24675385,24675492..24675827,24676012..24676249, 24676466..24676796)) /locus_tag="TCM_029862" /product="Lipoxygenase" /inference="alignment:exonerate-protein:2:frave:gene29020" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029865t1" /inference="similar to AA sequence:ricco:29851.m002424" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1057t4" CDS complement(join(24673147..24673903,24674014..24674280, 24674363..24674664,24675064..24675171,24675297..24675385, 24675492..24675827,24676012..24676249,24676466..24676702)) /locus_tag="TCM_029862" /note="dbxref ricco:29851.m002424; paralog of Thecc1EG029865t1" /codon_start=1 /product="Lipoxygenase" /protein_id="EOY28236.1" /db_xref="TAIR:AT1G17420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B5B0D9" /translation="MFQWPRNLKVNADKVTHKVQFLVDAKFGVPGAIIVTNKYHKEFY LESIAIEGLVHFDCNSWVQPDRDIQAEKRIFFSNKAYLPNDTPVGLKELRDKDLRQLR GNGEGIRTLSDRIYDYDIYNDLGCPDKGAKYVRPILGGRTQPYPKRCRTGRPPANSDV NAESTVTRYMPQYVPRDEAFEDLKIAAVTEGKWKLMLRSLLPSVKEAASINSDVIRTF SDINDLYKESAPFELKSKNQFRETAHLPRMLNKIINESVQDIFKFDPPKIVSGNNPSC SLRDDELGRLTLAGMNPLSIERLKVFPPVSKLDPSIHGPQDSALREEHIVCHLNGMSV QQALEESKLFILDYHDVYLPFLNRINAHQNRKAYATRTIFLLTHLGSLKPIAIELSLP EKNQNVPAKRVLTPPVDATTRWLWQLGKAHVCSNDAGAHQLIHHWLRTHACLEPLIIA AHRQLSVMHPIYKLLHPHTRYTMDVNAQGRQLLLSAGGIIESHLSTAECSMEITASVY QNWWRFDMESLPADLIRRGMAVPDPTQPHGLKLLIEDYPYANDGLLIWSAIEELVGTY VNYYYPEASSIQSDSELNNWYHEFINVGHADICHVSWWPKLSTPNDLVSILTTIIWVA SAYHAAVNFGMYHYGGYFPVRPPFMRRLLPNEHDPDHASFFADPEGYFLASLPCLSQM LHYISVLHILSTHSADEEYLGDRKDLSTWAGDPEILGAFYKFSMEMRRIEKEIEKRNA DPKLRNRCGAGVSPYELLLPSSGPGATCRGVPTSASI" mobile_element 24677526..24677584 /note="source:INTACT751_F6_scaffold_4-int 453 511" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(24677623..24683388) /locus_tag="TCM_029863" /note="dbxref CacaoGD:Thecc1EG029863" mRNA complement(join(24677623..24677889,24678835..24678899, 24679107..24679466,24680189..24680195,24681419..24681648, 24682476..24682577,24682936..24683388)) /locus_tag="TCM_029863" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage" CDS complement(join(24678835..24678899,24679107..24679466, 24680189..24680195,24681419..24681648,24682476..24682569)) /locus_tag="TCM_029863" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28237.1" /translation="MPGDPSCCVRDDELGRLNTCRNEPLKHRKAKGPVFYGAVELYGG MVFFHLNICGMGAFSTGVSLSLFAGCVMWVKCKINAYCYVIFRCYMIFLPLSDVFHRL IRVCFVFTKVMAGTRDIYGSLTIDKLPTKSFPCSHFRRHQQNYVSSPHSLPYSRKSTL VQARKVVAAPMAAALIKAETPVQLKVKALVTVKHDTVENVKDMMFRWLASGGHTAQRG VILQLVSTEVDPIVGTTVRRRFGSPQLQGKAHR" mobile_element 24680682..24681225 /note="source:CACAO_M_E69422_F335_scaffold_9 923 1388" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24681166..24681246) /note="source:scaffold_1_CACTA_0011 7425 7510" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24682778..24682908) /note="source:scaffold_2_CACTA_0248 359 500" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24682910..24683026) /note="source:CACAO_M_S_E5474_F222_scaffold_1 1813 2102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24683027..24684584 /note="source:CACAO_on_E459_scaffold_2 410 1887" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(24684585..24685308) /note="source:CACAO_M_S_E5474_F222_scaffold_1 1 1812" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24685241..24688778) /locus_tag="TCM_029864" /note="dbxref CacaoGD:Thecc1EG029864" mRNA complement(join(24685241..24685611,24686228..24686472, 24688718..24688778)) /locus_tag="TCM_029864" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029865t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(24685424..24685611,24686228..24686297)) /locus_tag="TCM_029864" /note="paralog of Thecc1EG029865t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28238.1" /translation="MAWSFGPWEATSKPECVYLGLTADVNAESPVKELVPMYVPRDEA YEELKKETIAAGKRKGQLNNLAPWRKDVSTDNAAIQTFSEI" gene complement(24688951..24699093) /locus_tag="TCM_029865" /note="dbxref CacaoGD:Thecc1EG029865" mRNA complement(join(24688951..24690099,24690226..24690492, 24690598..24690899,24691042..24691149,24691270..24691355, 24691466..24691804,24691895..24692132,24692222..24692490, 24692650..24693159,24698017..24698195,24698569..24699093)) /locus_tag="TCM_029865" /product="Lipoxygenase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s16780.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029861t1" /inference="similar to AA sequence:ricco:29851.m002422" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7300t5" CDS complement(join(24689343..24690099,24690226..24690492, 24690598..24690899,24691042..24691149,24691270..24691355, 24691466..24691804,24691895..24692132,24692222..24692490, 24692650..24693022)) /locus_tag="TCM_029865" /note="dbxref ricco:29851.m002422; paralog of Thecc1EG029861t1" /codon_start=1 /product="Lipoxygenase, putative" /protein_id="EOY28239.1" /db_xref="TAIR:AT1G17420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B5B0D9" /translation="MAGTREMFCTLATDRLFPAKSPLLGHLSGRRSKFFSSTTSFISG KRRLMRARKVESTPMAALTEVESIEDDQEIPVQFKLTALVTVKYDTKEHVKDFMLRWL DSQGGVTKKGVILQLVSTQIDLRTRKPKMSKEATIDWSRTLNNYSDEVSSHKVQFLVD TNFGVPGAMIVTNKYEQEFYLESIAIEGFAYFACNSWVQPHRLQAEKRIFFSNKACLP CETPVGLKELREKELRQLRGNGEGVRALSDRIYDYDVYNDLGCPDGGIEFTRPILGGE KCPYPRRCRTGRPPTNTDVNAESPINELVPMYVPRDEAYEELKKETIAAGKRKGLLNN LVPWLKDVSTDNDAIQTFSEIYDLYKESPSLEIKSHKQDGFREKPHFLITINKMIKES TRDIFKFDPPNIISRDPSCCVRDDELGRLTLAGMNPLSIERLKTFPPVSTLDPSVYGP KESAIREEHITCHLNGMSVQQALEEVKLFILDYHDVYLPYLNRINAHQNRKAYATRTI FLLTPMGTLKPIAIELSLPPTNPNSPSKQVLTPPADGTSSWLWQLGKAHVCSNDSGSH QLIHHWLRVHACMEPFIIAAHRQLSIMHPIYRLLQPHMRYTLATNAQAREVLINAEGI IESFFSTVECSMEITAPVYRNWWRFDMDSLPADLIRRGIAVPDQTQPHGLKLLIEDYP YANDGLLIWSAIEDLAQTYVKYYYSEASKIQSDSELNAWYYESINVGHADIRHANWWP KLSTPDDLVSILTIIIWVTSAKHAAVNFGQYHYGGYVPVRPPHMRRLLPNENDPEYAT FLADPEGYFLSSLPSLRETTYFMSVLGILSAHSTDEEYLGDRKDFSAWTGDPEIIEAF HKFSIEMRRIEEEIEKRNADPKLRNRCGAGVSPYELLIPSSGPGVTSRGVPNSITT" mobile_element 24693366..24694352 /note="source:CACAO_PIF_E144_scaffold_10 1203 2381" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 24694845..24695026 /note="source:CACAO_M_E4753_F17_scaffold_2 7542 7720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24697290..24698917 /note="source:CACAO_Mutator_E1430_scaffold_6 1 1628" /mobile_element_type="transposon:TIR/Mutator" gene complement(24699212..24708713) /locus_tag="TCM_029866" /note="dbxref CacaoGD:Thecc1EG029866" mRNA complement(join(24699212..24700143,24700960..24701025, 24701463..24701585,24701926..24702013,24702099..24702157, 24702396..24702455,24702554..24702614,24702695..24702826, 24703340..24703550,24704182..24704315,24704812..24704894, 24705030..24705095,24705629..24705684,24705770..24705869, 24706459..24706567,24706657..24706811,24706996..24707166, 24707560..24707610,24707712..24707793,24707872..24707955, 24708619..24708713)) /locus_tag="TCM_029866" /product="AAA-type ATPase family protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G04910.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04380.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7361t5" mRNA complement(join(24699597..24700143,24700960..24701025, 24701463..24701585,24701926..24702013,24702099..24702157, 24702396..24702455,24702554..24702614,24702695..24702826, 24703340..24703550,24704182..24704315,24704812..24704894, 24705030..24705095,24705629..24705684,24705770..24705869, 24706459..24706567,24706657..24706811,24706996..24707166, 24707560..24707610,24707712..24707793,24707872..24707967, 24708445..>24708559)) /locus_tag="TCM_029866" /product="AAA-type ATPase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s05260.1" /inference="alignment:exonerate- protein:2:TAIR:AT4G04910.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04380.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12998t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7361t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc518t2" CDS complement(join(24700000..24700143,24700960..24701025, 24701463..24701585,24701926..24702013,24702099..24702157, 24702396..24702455,24702554..24702614,24702695..24702826, 24703340..24703550,24704182..24704315,24704812..24704894, 24705030..24705095,24705629..24705684,24705770..24705869, 24706459..24706567,24706657..24706811,24706996..24707166, 24707560..24707610,24707712..24707793,24707872..24707955, 24708619..24708629)) /locus_tag="TCM_029866" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="AAA-type ATPase family protein isoform 1" /protein_id="EOY28240.1" /db_xref="Phytozome:POPTR_0004s04380.1" /db_xref="TAIR:AT4G04910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M0Y8" /translation="MAGRIRNGYIALNAIQRRVARVSNGDTVSVSRFIPPEDFNLALL TLELEFVKKGTKSEQVDAVLLSNQLRKRFVNQVMTAGQKVTFEYHGNNYIFTVNQAQV EGQEKANAPERGMISSDTYFIFEAQNSSGIKIVNQREAASSNIFRHKEFNLQSLGIGG LSAEFADIFRRAFASRVFPPHVTNKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGK EPKIVNGPEVLSKFVGETEKNVRDLFADAENDQRTCGDDSDLHVIIFDEIDAICKSRG STRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDLLDEALLRPGRLEVQVEIS LPDENGRLQILQIHTNKMKENSFLSPDVSLQELAARTKNYSGAELEGVVKSAVSFALN RQVSMDDLTKPVDEESIKVTMDDFLNALVEVVPAFGASTDDLERCRLNGMVDCGDRHK HIYQRAMLLVEQVKVSKGSPLLTSLLEGPSGSGKTALAATVGIDSDFPYVKIVSAESM IGLHESTKCAQIVKVFEDAYKSPLSIIILDDIERLLEYVAIGPRFSNIISQTLLVLLK RLPPKGKKLLVIGTTSEVGFLDSVGISDSFSVTYHLPTLKTNDAKKVLHQLNVFAEED VSAAAEALNDMPIKKLYMLIEMAAQGEQGGAAEAIYSGKEKIKLSHFYDCLQDVVRY" CDS complement(join(24700000..24700143,24700960..24701025, 24701463..24701585,24701926..24702013,24702099..24702157, 24702396..24702455,24702554..24702614,24702695..24702826, 24703340..24703550,24704182..24704315,24704812..24704894, 24705030..24705095,24705629..24705684,24705770..24705869, 24706459..24706567,24706657..24706811,24706996..24707166, 24707560..24707610,24707712..24707793,24707872..24707967, 24708445..>24708557)) /locus_tag="TCM_029866" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="AAA-type ATPase family protein isoform 2" /protein_id="EOY28241.1" /db_xref="Phytozome:POPTR_0004s04380.1" /db_xref="TAIR:AT4G04910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M0Y8" /translation="LAFTNLAYCSASDLHNYAVPGTRLFLANVGDDFVLSVSPHESIR NGYIALNAIQRRVARVSNGDTVSVSRFIPPEDFNLALLTLELEFVKKGTKSEQVDAVL LSNQLRKRFVNQVMTAGQKVTFEYHGNNYIFTVNQAQVEGQEKANAPERGMISSDTYF IFEAQNSSGIKIVNQREAASSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPP HVTNKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGKEPKIVNGPEVLSKFVGETEK NVRDLFADAENDQRTCGDDSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKI DGVESLNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKE NSFLSPDVSLQELAARTKNYSGAELEGVVKSAVSFALNRQVSMDDLTKPVDEESIKVT MDDFLNALVEVVPAFGASTDDLERCRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSP LLTSLLEGPSGSGKTALAATVGIDSDFPYVKIVSAESMIGLHESTKCAQIVKVFEDAY KSPLSIIILDDIERLLEYVAIGPRFSNIISQTLLVLLKRLPPKGKKLLVIGTTSEVGF LDSVGISDSFSVTYHLPTLKTNDAKKVLHQLNVFAEEDVSAAAEALNDMPIKKLYMLI EMAAQGEQGGAAEAIYSGKEKIKLSHFYDCLQDVVRY" mobile_element 24704731..24704785 /note="source:scaffold_5_CACTA_0580 13305 13359" /mobile_element_type="transposon:TIR/CACTA" gene 24710368..24712647 /locus_tag="TCM_029868" /note="dbxref CacaoGD:Thecc1EG029868" mRNA join(24710368..24710841,24710933..24711013, 24711875..24711976,24712122..24712196,24712287..24712647) /locus_tag="TCM_029868" /product="Ribosomal protein L21" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s10770.2" /inference="similar to AA sequence:ricco:29851.m002420" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10819t00001" CDS join(24710446..24710841,24710933..24711013, 24711875..24711976,24712122..24712196,24712287..24712406) /locus_tag="TCM_029868" /note="dbxref ricco:29851.m002420" /codon_start=1 /product="Ribosomal protein L21" /protein_id="EOY28242.1" /db_xref="TAIR:AT4G30930.1" /translation="MAHRRCVQSLARHATALTSLKTTRPLSTLEILTSKLNPVITITN LEPSWCTRWSHSRYFSSSKSDDSENEVEMEEASDGETEEEEAASDLDRDYSPEEKEAE AAAIGYKVLGPLQRSDRVFKDYEPVFAVVQIGSHQFKVSNGDCIFTERLKFCEVNDKL ILNKVLLLGSPTQTIIGRPILPDAAVHAVVEEHALDAKVIIFKKKKRKNYRRTKGHRQ ELTKLRITDIQGIEKPEMKTDGTPLKAAVKKPEEIVAAA" gene complement(24712855..24719338) /locus_tag="TCM_029869" /note="dbxref CacaoGD:Thecc1EG029869" mRNA complement(join(24712855..24713271,24713463..24713585, 24719181..24719338)) /locus_tag="TCM_029869" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" CDS complement(join(24713042..24713271,24713463..24713502)) /locus_tag="TCM_029869" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28243.1" /translation="MDQTVVSMEQHEPVPVPIAWAFADCQHKVQIAGYPNAAVRFLPR LSSQGWEARAEIRTFPGPRVIRDSNFRLLTRTIWQQLRFIPAIAG" gene 24719445..24727024 /locus_tag="TCM_029870" /note="dbxref CacaoGD:Thecc1EG029870" mRNA join(24719445..24719763,24720486..24721341, 24721490..24721601,24721712..24723152,24723386..24723523, 24724089..24724523,24724620..24724683,24724819..24725282) /locus_tag="TCM_029870" /product="Ubiquitin-conjugating enzyme E2 24, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s05240.1" /inference="similar to AA sequence:Phytozome:GSVIVT01005206001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc959t6; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc990t2" mRNA join(24719463..24719763,24720486..24720870, 24721149..24721341,24721490..24721601,24721712..24723152, 24723386..24723523,24724089..24724523,24724620..24724683, 24724819..24724958,24725257..24725568,24726131..24727024) /locus_tag="TCM_029870" /product="Ubiquitin-conjugating enzyme E2 24, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s05240.1" /inference="similar to AA sequence:Phytozome:GSVIVT01005206001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc990t2" mRNA join(24719488..24719763,24720486..24721341, 24721490..24721601,24721712..24723152,24723386..24723523, 24724089..24724523,24724620..24724683,24724819..24724958, 24725257..24725568,24726131..24727021) /locus_tag="TCM_029870" /product="Ubiquitin-conjugating enzyme E2 24, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s05240.1" /inference="similar to AA sequence:Phytozome:GSVIVT01005206001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc990t10; alternateUTRof:Thecc1EG029870t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc990t2" gene complement(24720785..24721175) /locus_tag="TCM_029871" /note="dbxref CacaoGD:Thecc1EG029871" mRNA complement(24720785..24721175) /locus_tag="TCM_029871" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage" CDS complement(24720904..24721155) /locus_tag="TCM_029871" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28247.1" /translation="MYPEEDILTQMPKEICPKGTVETTKDSKCQRRFAQMDRRLHWRK LPEEISHTSNKEVNLPGVLFEGQSEVPSMEGDPQSKSCK" CDS join(24721722..24723152,24723386..24723523, 24724089..24724523,24724620..24724683,24724819..24724958, 24725257..24725568,24726131..24726379) /locus_tag="TCM_029870" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ubiquitin-conjugating enzyme E2 24, putative isoform 1" /protein_id="EOY28244.1" /db_xref="Phytozome:GSVIVT01005206001" /db_xref="TAIR:AT2G33770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T0D7" /translation="MDVLLTDSDWERFSESGSSEEQEEIDFLYGGQAQSILSSLEESI GKIDDFLSFERGFMHGDIVRSVTDPSGQMGRVTNINMFVDLENALGKIIKDVNSKKLL KLRSISVGDYVVNATWIGRVDKVVDSVSIVFDDGSKCEVTAVDHEKLVPISPNIIDDS QYPYYPGQRVQVVPSDFSRSTRWLCGTWRGNHEEGTICGVDAGLVYVDWISSAQVAHD LSASPPSRLQEAKNLTLLSCFSHANWQLGDWCLANCKGTTEHFFHASTHDLNKGNWKL EKGFKRGNLGSRLEEIFVIVKTRTKVDVVWQDGTCGLGLDSQTVLPVGVANGHEFWPD QFVLEKETNGNSQRWGVVRGVDAKERTVKVQWRNMVLNEVNGLGGELMEETCSAYELV EHPDYCYCYGDIVFKVVQNQFGDQADKGHVILETGLGTEAALKGKNCNWDQKKYPSTY CLSCIGIVIGFKDGDVEVKWASGIPTKVAPYEIYHIDKYEVSATTPVLYEENAEVFSQ EMPVHETQSNSHTGKDLLSFDGTDEIGKKFSWMPTSFFHPQAAIGFFSSIASSILGSL GSRSLLSQNSSGCMPHDAKEIGILFEKEVLETCNHCAELDLSELQTFETTNINQEVEE IEENKGSMMPRPSETSHQFRQFDMVSDCSDHHFLGESKVLAVSQVKRNWLKKVQQEWS ILEKNLPETIYVRVCEERINLLRAALVGAPGTPYHDGLFLFDIFLPPEYPYEPPLVHY HSGGLRLNPNLYESGKVCLSLLNTWTGSGTEVWNPVSSTILQVLLSLQALVLNEKPYF NEAGYDKQLGRAEGETNSVSYNENAFLVTCQSMLYILRKPPKHFEALVKEHFSRCAEN ILLACNAYMEGVPIGRALECGGNGHDENLKGSSTGFKIMLAKLYPKLVEAFSDQGTDC SQFCGLEK" CDS join(24721722..24723152,24723386..24723523, 24724089..24724523,24724620..24724683,24724819..24724958, 24725257..24725568,24726131..24726379) /locus_tag="TCM_029870" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ubiquitin-conjugating enzyme E2 24, putative isoform 1" /protein_id="EOY28245.1" /db_xref="Phytozome:GSVIVT01005206001" /db_xref="TAIR:AT2G33770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T0D7" /translation="MDVLLTDSDWERFSESGSSEEQEEIDFLYGGQAQSILSSLEESI GKIDDFLSFERGFMHGDIVRSVTDPSGQMGRVTNINMFVDLENALGKIIKDVNSKKLL KLRSISVGDYVVNATWIGRVDKVVDSVSIVFDDGSKCEVTAVDHEKLVPISPNIIDDS QYPYYPGQRVQVVPSDFSRSTRWLCGTWRGNHEEGTICGVDAGLVYVDWISSAQVAHD LSASPPSRLQEAKNLTLLSCFSHANWQLGDWCLANCKGTTEHFFHASTHDLNKGNWKL EKGFKRGNLGSRLEEIFVIVKTRTKVDVVWQDGTCGLGLDSQTVLPVGVANGHEFWPD QFVLEKETNGNSQRWGVVRGVDAKERTVKVQWRNMVLNEVNGLGGELMEETCSAYELV EHPDYCYCYGDIVFKVVQNQFGDQADKGHVILETGLGTEAALKGKNCNWDQKKYPSTY CLSCIGIVIGFKDGDVEVKWASGIPTKVAPYEIYHIDKYEVSATTPVLYEENAEVFSQ EMPVHETQSNSHTGKDLLSFDGTDEIGKKFSWMPTSFFHPQAAIGFFSSIASSILGSL GSRSLLSQNSSGCMPHDAKEIGILFEKEVLETCNHCAELDLSELQTFETTNINQEVEE IEENKGSMMPRPSETSHQFRQFDMVSDCSDHHFLGESKVLAVSQVKRNWLKKVQQEWS ILEKNLPETIYVRVCEERINLLRAALVGAPGTPYHDGLFLFDIFLPPEYPYEPPLVHY HSGGLRLNPNLYESGKVCLSLLNTWTGSGTEVWNPVSSTILQVLLSLQALVLNEKPYF NEAGYDKQLGRAEGETNSVSYNENAFLVTCQSMLYILRKPPKHFEALVKEHFSRCAEN ILLACNAYMEGVPIGRALECGGNGHDENLKGSSTGFKIMLAKLYPKLVEAFSDQGTDC SQFCGLEK" CDS join(24721722..24723152,24723386..24723523, 24724089..24724523,24724620..24724683,24724819..24725045) /locus_tag="TCM_029870" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ubiquitin-conjugating enzyme E2 24, putative isoform 3" /protein_id="EOY28246.1" /db_xref="Phytozome:GSVIVT01005206001" /db_xref="TAIR:AT2G33770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T0D7" /translation="MDVLLTDSDWERFSESGSSEEQEEIDFLYGGQAQSILSSLEESI GKIDDFLSFERGFMHGDIVRSVTDPSGQMGRVTNINMFVDLENALGKIIKDVNSKKLL KLRSISVGDYVVNATWIGRVDKVVDSVSIVFDDGSKCEVTAVDHEKLVPISPNIIDDS QYPYYPGQRVQVVPSDFSRSTRWLCGTWRGNHEEGTICGVDAGLVYVDWISSAQVAHD LSASPPSRLQEAKNLTLLSCFSHANWQLGDWCLANCKGTTEHFFHASTHDLNKGNWKL EKGFKRGNLGSRLEEIFVIVKTRTKVDVVWQDGTCGLGLDSQTVLPVGVANGHEFWPD QFVLEKETNGNSQRWGVVRGVDAKERTVKVQWRNMVLNEVNGLGGELMEETCSAYELV EHPDYCYCYGDIVFKVVQNQFGDQADKGHVILETGLGTEAALKGKNCNWDQKKYPSTY CLSCIGIVIGFKDGDVEVKWASGIPTKVAPYEIYHIDKYEVSATTPVLYEENAEVFSQ EMPVHETQSNSHTGKDLLSFDGTDEIGKKFSWMPTSFFHPQAAIGFFSSIASSILGSL GSRSLLSQNSSGCMPHDAKEIGILFEKEVLETCNHCAELDLSELQTFETTNINQEVEE IEENKGSMMPRPSETSHQFRQFDMVSDCSDHHFLGESKVLAVSQVKRNWLKKVQQEWS ILEKNLPETIYVRVCEERINLLRAALVGAPGTPYHDGLFLFDIFLPPEYPYEPPVSFT SIVLLIIELPLKKKKKRSSCCRTL" gene 24727071..24730398 /locus_tag="TCM_029873" /note="dbxref CacaoGD:Thecc1EG029873" mRNA 24727071..24730398 /locus_tag="TCM_029873" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g08030.1" /inference="similar to AA sequence:Phytozome:Glyma15g08030.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc616t8" CDS 24727296..24730214 /locus_tag="TCM_029873" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28248.1" /db_xref="Phytozome:Glyma15g08030.1" /db_xref="TAIR:AT4G21700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3F7" /translation="MKPPKPPRFYPKNPSKICDFPSSSFCLFLAFFFLLQIPKTASLF PTQAPPEYSKYCNDVVPESPVEPTTLFPSSTANNLDFRIGYFTGGDSFFFQSNIAADA PKAAAFYAQYFHNTLYNNTTQIYKIQGKLGLQIPRSFFVSSSNDSLLNPHRGLRRKFR IRGPRIPVIGRGTPSFSLSGYWSESAGRLCMVGSGVSNGNAGRYRTFNVVLKLNYSNN FNVFGSLISGVLECLDSEHSLSYFEPVSLLGVRRSFENYEFSLVENGKGSSCLSEVEG EGENLDVSENDGGVCSAIVERTIRFELDYGKDCDKASCASVFKDVKYVPSFMFFRQLK CVDKGKMQILLGFHNSSRMHTLFPFDPNTTLIGEGTWDEKKNKVCGIACRVLNFRDSL TRAFVGDCSIKFSLRYPKVLSLRNRYSLVGKLWSDKSEDDPSYFGMIRFRSIWEVSPG FMSVLGLKYEYTEVDSARRSCASKNIAKHKGKTYPDGDSIDMRFDMLVTDSKGESAWG FGNPLFVDDQLYKHQRYGPLPLAVHLSNNDSRLLNISYQISYTYQSSNAPALSRVVEI SAEGIYDRDTGVLCMVGCKHVRYYNQILIENGLLDCDVVVTVQFSPVNAAEIYRVKGT IESTRAKSDPLYFEPINLSSKSFYTRQAKESIWRIDLEITMVLISNTLACIFVGLQLF HVKKHPEVLPFISVVMLIVLTLGHMIPLLLNFEALFVTNRNQQNAFLESGGWLEVNEI IVRAVTMVAFLLQFRLLQLTWSVRQGNESQKGLWDAEKKVLLVSLPLYVSGGLIAWLV HQWKNSRQSPFLQPHRNGLHMTLQQHFYQQYSFWSDLKSYGGLVFDGFLLPQVVFNVL SKSNEKALAASFYIGTTMVHLLPHAYDLYRAHSSSGYLGLSYIYANHKMDFFSTAWDI IIPCGGLLFAIFIFLQQRYGGHCFLPKRFREDAVYEKVPVEIGVELQGESVQKNFYSL " gene complement(24730704..24737595) /locus_tag="TCM_029874" /note="dbxref CacaoGD:Thecc1EG029874" mRNA complement(join(24730704..24730850,24731656..24737595)) /locus_tag="TCM_029874" /product="Glucan synthase-like 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g038510.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008108t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s05210.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.10 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc669t9" mRNA complement(join(24731381..24731404,24731656..24737560)) /locus_tag="TCM_029874" /product="Glucan synthase-like 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g038510.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008108t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s05210.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc665t4; alternateUTRof:Thecc1EG029874t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc669t9" CDS complement(24731663..24737005) /locus_tag="TCM_029874" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG008108t1" /codon_start=1 /product="Glucan synthase-like 1 isoform 1" /protein_id="EOY28249.1" /db_xref="Phytozome:POPTR_0011s05210.1" /db_xref="TAIR:AT4G04970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZT82" /translation="MSAPRRRPISTRGRGGALRAQPPPTPPMREVYNIIPVHDLLADH PSLRYPEVRAVGAALLSPALNLPKPPFITLEPHMDLMDWLGYSFGFQSDNVRNQREHL VLHLANSQMRLQPPPTKPHELDPNVLRRFRKKLLQNYTSWCSFLGVKSHLHLSARRSN SNDVTRELLYVSLYLLIWGEAANLRFCPELLSYIYHHMAMELNKVLEEHLDEFTGRPF VPSISGNCAFLKCIVMPFYRTINTEVESSRNGTAPHSAWRNYDDINEYFWSKRCFKSL KWPIDYESNFFDTVEKSKRVGKTGFVEQRSFWNVFRSFDRLWILLILFLQASIIVAWA GTKYPWEALEERDVQVELLTVFITWAGLRFLQSVLDAGTQYSLVSKETLWLGIRMVLK SVVALTWIVVFGVFYGRIWSQKNADRRWSFEANQRIVTFLEAVFVFVIPELLSLLFFV IPWVRNWIEGLDWVVISWLMWWFHTWIFVGRGLREGLVDNIRYTLFWVVVLVWKFAFS YFLQIKPLVAPTKALLSLSNLSYNWHQFFGSSNRIAVVLLWLPVVLIYFIDLQIWYSV FSSFVGATVGLFSHLGEIRNMEQLRLRFQFFASAMQFNLMPEDQLLSPKATLVKKLRD AIHRVKLRYGLGQPYKKIESSQVEATRFALIWNEIIISLREEDLISDREVELMELPPN CWEIRVIRWPCFLLCNELLLALSKAKELADAPDLWLWLKICKNEYGRCAVIEAYDSVK YLLLWVVKYGTEEYSIVLKLFQEIDFYMQNGKLTSAYKMDVLQQIHGKLESLVDLLVE QKNDQSQAVNLLQALYELCIREFPKMKRSMAQLREEGLAPRNPATDEGLLFENAIKFP DAEDADFHKQLRRLQTILTSKDSMHNVPLNLEARRRIAFFSNSLFMNMPRASNVEKMM AFSVLTPYYDEEVLFKKGMLQDENEDGISTLFYLQKIYEDEWSNFMERMHREGMDDDD DIWKTKLRDLRLWASYRGQTLSRTVRGMMYYYRALKMLSFLDSASEMDIRTGSQEIAS HHSLNQNRGLVDGIRPPTPKKLSRAISGVRLLFKGHEYGCALMKFTYVVTCQLYGRQK AKGESHAEEILYLMKNNEALRVAYVDEVQLERDEVEYYSVLVKYDQQRQEEVEIYRIR LPGPLKLGEGKPENQNHAIIFTRGDAIQTIDMNQDNYFEEALKMRNLLEEFKTNYGIR KPTILGVRENVFTGSVSSLAWFMSAQETSFVTLGQRVLANPLKVRMHYGHPDVFDRFW FLTRGGISKASRVINISEDIFAGFNCTLRGGNVTHHEYMQVGKGRDVGLNQISMFEAK VASGNGEQVLSRDVYRLGHRLDLFRMLSFYYTTVGHYFNTMMVVLTVYTFLWGRLYLA LSGVEKEAKNKSISNEALGTILNQQFIIQLGLFTALPMIVENCLEHGFLTSIWDFLKM QLQLASFFYTFSMGTRTHFFGRTILHGGAKYRATGRGFVVEHKSFAENYRLYARSHFV KAIELGVILAVYASYSPLAKDTFVYIAMTISSWFLVVSWIMSPFVFNPSGFDWLKTVY DFDDFMNWIWCRGGVFAEADKSWEIWWYEEQDHLRTTGLWGKLLEIILDLRFFFFQYG IVYQLGIADKSTRITVYLLSWIYVVVAVGIYVIIAYAQDKYAAKKHIYYRVVQLVVTI LTVLVIALLLNLTKFKFLDLVTSLLAFIPTGWGLISIALVLRPFLQSTVVWETVVSLA RLYDMLFGVIVIAPVALLSWLPGFQSMQTRILFNEAFSRGLQISRIISGKKSTA" CDS complement(24731663..24737005) /locus_tag="TCM_029874" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG008108t1" /codon_start=1 /product="Glucan synthase-like 1 isoform 1" /protein_id="EOY28250.1" /db_xref="Phytozome:POPTR_0011s05210.1" /db_xref="TAIR:AT4G04970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZT82" /translation="MSAPRRRPISTRGRGGALRAQPPPTPPMREVYNIIPVHDLLADH PSLRYPEVRAVGAALLSPALNLPKPPFITLEPHMDLMDWLGYSFGFQSDNVRNQREHL VLHLANSQMRLQPPPTKPHELDPNVLRRFRKKLLQNYTSWCSFLGVKSHLHLSARRSN SNDVTRELLYVSLYLLIWGEAANLRFCPELLSYIYHHMAMELNKVLEEHLDEFTGRPF VPSISGNCAFLKCIVMPFYRTINTEVESSRNGTAPHSAWRNYDDINEYFWSKRCFKSL KWPIDYESNFFDTVEKSKRVGKTGFVEQRSFWNVFRSFDRLWILLILFLQASIIVAWA GTKYPWEALEERDVQVELLTVFITWAGLRFLQSVLDAGTQYSLVSKETLWLGIRMVLK SVVALTWIVVFGVFYGRIWSQKNADRRWSFEANQRIVTFLEAVFVFVIPELLSLLFFV IPWVRNWIEGLDWVVISWLMWWFHTWIFVGRGLREGLVDNIRYTLFWVVVLVWKFAFS YFLQIKPLVAPTKALLSLSNLSYNWHQFFGSSNRIAVVLLWLPVVLIYFIDLQIWYSV FSSFVGATVGLFSHLGEIRNMEQLRLRFQFFASAMQFNLMPEDQLLSPKATLVKKLRD AIHRVKLRYGLGQPYKKIESSQVEATRFALIWNEIIISLREEDLISDREVELMELPPN CWEIRVIRWPCFLLCNELLLALSKAKELADAPDLWLWLKICKNEYGRCAVIEAYDSVK YLLLWVVKYGTEEYSIVLKLFQEIDFYMQNGKLTSAYKMDVLQQIHGKLESLVDLLVE QKNDQSQAVNLLQALYELCIREFPKMKRSMAQLREEGLAPRNPATDEGLLFENAIKFP DAEDADFHKQLRRLQTILTSKDSMHNVPLNLEARRRIAFFSNSLFMNMPRASNVEKMM AFSVLTPYYDEEVLFKKGMLQDENEDGISTLFYLQKIYEDEWSNFMERMHREGMDDDD DIWKTKLRDLRLWASYRGQTLSRTVRGMMYYYRALKMLSFLDSASEMDIRTGSQEIAS HHSLNQNRGLVDGIRPPTPKKLSRAISGVRLLFKGHEYGCALMKFTYVVTCQLYGRQK AKGESHAEEILYLMKNNEALRVAYVDEVQLERDEVEYYSVLVKYDQQRQEEVEIYRIR LPGPLKLGEGKPENQNHAIIFTRGDAIQTIDMNQDNYFEEALKMRNLLEEFKTNYGIR KPTILGVRENVFTGSVSSLAWFMSAQETSFVTLGQRVLANPLKVRMHYGHPDVFDRFW FLTRGGISKASRVINISEDIFAGFNCTLRGGNVTHHEYMQVGKGRDVGLNQISMFEAK VASGNGEQVLSRDVYRLGHRLDLFRMLSFYYTTVGHYFNTMMVVLTVYTFLWGRLYLA LSGVEKEAKNKSISNEALGTILNQQFIIQLGLFTALPMIVENCLEHGFLTSIWDFLKM QLQLASFFYTFSMGTRTHFFGRTILHGGAKYRATGRGFVVEHKSFAENYRLYARSHFV KAIELGVILAVYASYSPLAKDTFVYIAMTISSWFLVVSWIMSPFVFNPSGFDWLKTVY DFDDFMNWIWCRGGVFAEADKSWEIWWYEEQDHLRTTGLWGKLLEIILDLRFFFFQYG IVYQLGIADKSTRITVYLLSWIYVVVAVGIYVIIAYAQDKYAAKKHIYYRVVQLVVTI LTVLVIALLLNLTKFKFLDLVTSLLAFIPTGWGLISIALVLRPFLQSTVVWETVVSLA RLYDMLFGVIVIAPVALLSWLPGFQSMQTRILFNEAFSRGLQISRIISGKKSTA" gene complement(24738258..24743125) /locus_tag="TCM_029877" /note="dbxref CacaoGD:Thecc1EG029877" mRNA complement(join(24738258..24740708,24740887..24740985, 24741086..24741165,24741254..24741393,24741565..24741664, 24741743..24741862,24742079..24742230,24742698..24743125)) /locus_tag="TCM_029877" /product="Pentatricopeptide repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04340.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s05200.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7324t2" CDS complement(join(24738833..24740708,24740887..24740985, 24741086..24741165,24741254..24741393,24741565..24741664, 24741743..24741862,24742079..24742230,24742698..24742848)) /locus_tag="TCM_029877" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein" /protein_id="EOY28251.1" /db_xref="Phytozome:POPTR_0011s05200.1" /db_xref="TAIR:AT2G33760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2STE6" /translation="MVCEALSLTIPLFSNLTSKDTKRATKHHNLHRSTLRIRCSSSSA EWPITADKHEDDHSLTGTAYDFERATVSLTRKSLSTSKRVTLVRHGLSSWNEEGRVQG SSNLSVLTETGVKQAERCRQALSNKHFDQCFSSPISRAKTTAEVLWQGREAPLVFLDS LKEAHLFFLEGMKNVDARVIYPKEYVTWREDPANFYVNGVYPVRKLWATAREAWREIL LTPGENFLVVTHKSMLRALICTALGLAPERFRAIDVNNGGISTFSFNKRGEAMLQSLN MTAHIITLTPLEHELTISCPPFDPQDFPSLSHVDSLSWQCYMEAKQLHRAPPSSHSPT YRAILRAGPRLKPLQQVHARIVITGLGHSQSLITKLLSFACAATSPVCYTRRLFLSIS KPDTFLFHSLITLTSKFNFPLESLVCHRRMISANISPSNYTFSAVVKCCTDLMAFNIG KTVHCQVLSCGYGLDSYVQAALVSFYAKSGDLGVARKVFDKMPEKTVVAWNSMISGYE QNGFGKEAVGLFYLMQDSGVKPDSTTFVCLLSACAQLGAAGLGCWVHEYIVRNCFDVN VVLGTALINMYSRCGNVSKAREAFDSMEEKNVVAWTAMISGYGMHGHGSQAIELFSEM RVHGPRPNNVTFVAILSACAHAGLVNEGRQIFASMRQQYGLVPSVEHHVCVVDMLGRA GHLHEAYQFIISVIPEEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYV MLSNIYALAGRMDRVEKVRNVMIRNRLKKEVGYSTIDIDQKICLFSMGDKSHPETNKI YLYLDELMSRCREAGYTPASESVMHEVEEEEREHALRYHSEKLAIAFGLLKTSSGVAI RIVKNLRMCEDCHTAIKFISIVTNREISVRDRLRFHLFKDGSCSCQDYW" gene complement(24743548..24744391) /locus_tag="TCM_029878" /note="dbxref CacaoGD:Thecc1EG029878" mRNA complement(join(24743548..24743913,24744028..24744391)) /locus_tag="TCM_029878" /product="CASP-like protein POPTRDRAFT_758901" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008103t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04330.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g14701t00001" CDS complement(join(24743577..24743913,24744028..24744182)) /locus_tag="TCM_029878" /note="paralog of Thecc1EG008103t1" /codon_start=1 /product="CASP-like protein POPTRDRAFT_758901" /protein_id="EOY28252.1" /db_xref="Phytozome:POPTR_0004s04330.1" /db_xref="TAIR:AT4G03540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2V1" /translation="MVKTRRIITTLLRLLALGATLSATVVMVTSHDSADVLNLKFSAK YTNSPTFKYYVIAEAIATGYSLIVLFLSSKSLVWRLIVILDVVIAMLLTSSISAALAI AQIGKKGNSHAGWLPICGQVPKFCDHVTGALIAGFVAAIVYLVLNLYSLHAVLSPLFP VKP" mobile_element complement(24745210..24746082) /note="source:scaffold_8_CACTA_0855 1771 2621" /mobile_element_type="transposon:TIR/CACTA" gene 24746130..24754467 /locus_tag="TCM_029879" /note="dbxref CacaoGD:Thecc1EG029879" mRNA join(24746130..24746564,24747245..24747466, 24747554..24747844,24747967..24748164,24748465..24748529, 24748626..24748712,24748787..24748907,24749001..24749045, 24749141..24749278,24749433..24749505,24749676..24749752, 24749850..24749957,24750043..24750159,24750412..24750567, 24750649..24750753,24750880..24751005,24751097..24751174, 24751259..24751354,24751447..24751562,24751686..24751755, 24752157..24752210,24752305..24752448,24752594..24752893, 24753189..24753611,24753727..24754467) /locus_tag="TCM_029879" /product="DNA-directed RNA polymerase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29851.m002412" /inference="similar to AA sequence:Phytozome:Glyma09g07570.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7398t4" CDS join(24746319..24746564,24747245..24747466, 24747554..24747844,24747967..24748164,24748465..24748529, 24748626..24748712,24748787..24748907,24749001..24749045, 24749141..24749278,24749433..24749505,24749676..24749752, 24749850..24749957,24750043..24750159,24750412..24750567, 24750649..24750753,24750880..24751005,24751097..24751174, 24751259..24751354,24751447..24751562,24751686..24751755, 24752157..24752210,24752305..24752448,24752594..24752893, 24753189..24753611,24753727..24753840) /locus_tag="TCM_029879" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNA-directed RNA polymerase family protein isoform 1" /protein_id="EOY28253.1" /db_xref="Phytozome:Glyma09g07570.1" /db_xref="TAIR:AT4G21710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P38420" /translation="MEDDSEYDPQLMDDEDDEEITQEDAWAVISAYFEEKGLVRQQLD SFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTES DGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM LRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP NKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIV FRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGV TREKRIKYAKEILQKEMLPHVGVGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHY GNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKY SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ ATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS RPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTI NDLVQARVNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLD DDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQVLL TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFE TMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL RFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKN KTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEPPKDQKKKGA" mRNA join(24748509..24748712,24748787..24748907, 24749001..24749045,24749141..24749278,24749433..24749505, 24749676..24749752,24749850..24749957,24750043..24750159, 24750412..24750567,24750649..24750753,24750880..24751005, 24751097..24751174,24751259..24751354,24751447..24751562, 24751686..24751755,24752157..24752210,24752305..24752448, 24752594..24752893,24753189..24753609,24753724..24754307) /locus_tag="TCM_029879" /product="DNA-directed RNA polymerase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29851.m002412" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044750t3" /inference="similar to AA sequence:ricco:29851.m002412" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc176t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7398t4" CDS join(24748654..24748712,24748787..24748907, 24749001..24749045,24749141..24749278,24749433..24749505, 24749676..24749752,24749850..24749957,24750043..24750159, 24750412..24750567,24750649..24750753,24750880..24751005, 24751097..24751174,24751259..24751354,24751447..24751562, 24751686..24751755,24752157..24752210,24752305..24752448, 24752594..24752893,24753189..24753609,24753724..24753749) /locus_tag="TCM_029879" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29851.m002412; paralog of Thecc1EG044750t3" /codon_start=1 /product="DNA-directed RNA polymerase family protein isoform 2" /protein_id="EOY28254.1" /db_xref="TAIR:AT4G21710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P38420" /translation="MLPHVGVGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGN KRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL ATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT KIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRP LFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIND LVQARVNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDD GLAPPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQVLLTT NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETM YNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF GEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKT DIVPGIHSLRL" gene 24754739..24756292 /locus_tag="TCM_029880" /note="dbxref CacaoGD:Thecc1EG029880" mRNA join(24754739..24755022,24755448..24755555, 24755833..24755942,24756103..24756292) /locus_tag="TCM_029880" /product="Lsd one like 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g31600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026947t1" /inference="similar to AA sequence:Phytozome:Glyma07g31600.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06903t00001" CDS join(24754905..24755022,24755448..24755555, 24755833..24755942,24756103..24756171) /locus_tag="TCM_029880" /note="paralog of Thecc1EG026947t1" /codon_start=1 /product="Lsd one like 2" /protein_id="EOY28255.1" /db_xref="Phytozome:Glyma07g31600.1" /db_xref="TAIR:AT4G21610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CVZ1" /translation="MANREEGEQQQQQQVEEEEEGPPPGWQSIPPPPQPPPSSEMAQM VCGSCRQLLSYPRGARQAKCSCCETVNFVLEAHQVGLVKCGSCAVLLMYPFGASSVRC SSCQFVTEIGAHNRRPPWSVQQGQPTPPNAVH" gene complement(24756465..24758962) /locus_tag="TCM_029881" /note="dbxref CacaoGD:Thecc1EG029881" mRNA complement(join(24756465..24756785,24756882..24756972, 24757053..24757112,24757608..24757701,24757825..24757864, 24757965..24758024,24758629..24758718,24758811..24758962)) /locus_tag="TCM_029881" /product="Transmembrane and coiled-coil domain-containing protein 5B" /inference="alignment:exonerate- protein:2:ricco:29851.m002410" /inference="similar to AA sequence:ricco:29851.m002410" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01375t00001" CDS complement(join(24756761..24756785,24756882..24756972, 24757053..24757112,24757608..24757701,24757825..24757864, 24757965..24758024,24758629..24758718,24758811..24758917)) /locus_tag="TCM_029881" /note="dbxref ricco:29851.m002410" /codon_start=1 /product="Transmembrane and coiled-coil domain-containing protein 5B" /protein_id="EOY28256.1" /db_xref="TAIR:AT2G33793.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IFY5" /translation="MSTTKARTKKRGSESLLVKSDPKTRLVDDFDPDLSSDLKGIMSA LQQIKEKAQKDGQKKNEETISSVAAEIRSKLDELKSKFEKERQTFAKALSKSSKECEN CLKNETAKFQEVYEKFCKEKAAHLQALKDTISRFEEDKERLFVRYEQLRKKEKSLISE QEKFCADKIAQLEESLGKRNRMTELSAF" mobile_element 24759706..24759777 /note="source:CACAO_M_S_E5162_F13_scaffold_1 5320 5377" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24759718..24759787) /note="source:scaffold_6_CACTA_0703 3450 3519" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24760622..24761285) /note="source:scaffold_10_CACTA_0130 8749 9434" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24761760..24762184 /note="source:CACAO_MITE_S167_scaffold_6 1 425" /mobile_element_type="transposon:TIR/MITE" gene 24763250..24764196 /locus_tag="TCM_029882" /note="dbxref CacaoGD:Thecc1EG029882" mRNA 24763250..24764196 /locus_tag="TCM_029882" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.53 coverage" CDS 24763426..24763629 /locus_tag="TCM_029882" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28257.1" /translation="MNLFSLLSKPLISSSLHRGEHGIIPYPFFSIESRICQCFASVGQ SKLNYSYDLCGFNGLERSCSTAK" gene 24766576..24769223 /locus_tag="TCM_029883" /note="dbxref CacaoGD:Thecc1EG029883" mRNA join(24766576..24766815,24768431..24769200) /locus_tag="TCM_029883" /product="RING membrane-anchor 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g31580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008094t1" /inference="similar to AA sequence:ricco:29851.m002408" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc752t10; alternateUTRof:Thecc1EG029883t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc775t2" mRNA join(24766809..24766815,24767855..24768052, 24768431..24769223) /locus_tag="TCM_029883" /product="RING membrane-anchor 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g31580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008094t1" /inference="similar to AA sequence:ricco:29851.m002408" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc775t2" CDS 24768478..24769188 /locus_tag="TCM_029883" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29851.m002408; paralog of Thecc1EG008094t1" /codon_start=1 /product="RING membrane-anchor 1 isoform 1" /protein_id="EOY28258.1" /db_xref="TAIR:AT4G03510.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PCH2" /translation="MACKQYYAQEWKTVPSASTSENLNGSFDCNICLDFAHEPIVTLC GHLYCWPCIYKWLHVQSASLAADEHPQCPVCKADISHTTMVPLYGRGQSESELQGKAL YRGMVIPPRPPACGTQALLSTTSPNGQQLPYRNPYQNQNYNPHAYYEEDSSSPLLNLG GTTVTGFHHPVVGMFGEMVYARVFGNSESLHPYPNSYYLTGSGSPRLRRHEMQADRSL NRLSIFLFCCFLLCLIVF" CDS 24768478..24769188 /locus_tag="TCM_029883" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29851.m002408; paralog of Thecc1EG008094t1" /codon_start=1 /product="RING membrane-anchor 1 isoform 1" /protein_id="EOY28259.1" /db_xref="TAIR:AT4G03510.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PCH2" /translation="MACKQYYAQEWKTVPSASTSENLNGSFDCNICLDFAHEPIVTLC GHLYCWPCIYKWLHVQSASLAADEHPQCPVCKADISHTTMVPLYGRGQSESELQGKAL YRGMVIPPRPPACGTQALLSTTSPNGQQLPYRNPYQNQNYNPHAYYEEDSSSPLLNLG GTTVTGFHHPVVGMFGEMVYARVFGNSESLHPYPNSYYLTGSGSPRLRRHEMQADRSL NRLSIFLFCCFLLCLIVF" mobile_element complement(24770966..24771019) /note="source:scaffold_8_CACTA_0856 934 986" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24770974..24771029 /note="source:scaffold_5_CACTA_0580 7224 7280" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24771030..24771067) /note="source:CACAO_M_S_E101721_F266_scaffold_9 1433 1502" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24772344..24772434) /note="source:CACAO_Helitron_SS_E51_scaffold_6 360 448" /mobile_element_type="transposon:Helitron" gene complement(24772431..24774673) /locus_tag="TCM_029884" /note="dbxref CacaoGD:Thecc1EG029884" mRNA complement(join(24772431..24772711,24773240..24774119, 24774196..24774673)) /locus_tag="TCM_029884" /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400039579" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400051714" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1388t1" CDS complement(join(24773768..24774119,24774196..24774605)) /locus_tag="TCM_029884" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /protein_id="EOY28260.1" /db_xref="Phytozome:PGSC0003DMP400051714" /db_xref="TAIR:AT2G20710.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7MEQ1" /translation="MRKGHGLEQVENFFSSISKRLKGFQVHVALPNCYAHENSVEKAE VLMQKMREMGFTNIPCYNILLGLYYLLNYSKLDAHMLEMEVNGIRYDRYTFGIRLSAY AAAYDVEGIDKIVEKVETSPQTALEWDTYAAAAQGNDAFDILLKLYADIGEKDEIYRI WNRYKEMGIIYNKGYKTLISALLKLDQVEGAEKIFEEWHSKKLSYDTRIPKLLIDVYS QKGLLGKAESLMDHAQAKGAEKFGWWMVLFGKWVS" gene complement(24774844..24776513) /locus_tag="TCM_029885" /note="dbxref CacaoGD:Thecc1EG029885" mRNA complement(join(24774844..24775565,24776369..24776513)) /locus_tag="TCM_029885" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is ortholog weak, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.46 coverage" CDS complement(join(24775362..24775565,24776369..24776449)) /locus_tag="TCM_029885" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28261.1" /translation="MCLQETTSSVSNLQSSPFYTSSNRAVKVPSSILGSNSCHFFTNP SSPPLFTISVVPVLDQWFRQGRKVEKTELQAMIKQLRKHTRFKDALDVSL" gene 24777560..24782313 /locus_tag="TCM_029886" /note="dbxref CacaoGD:Thecc1EG029886" mRNA join(24777560..24777988,24778204..24778284, 24779019..24779338,24780197..24780341,24781051..24782313) /locus_tag="TCM_029886" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031426t1" /inference="similar to AA sequence:frave:gene02408" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc144t2_C2" CDS join(24777734..24777988,24778204..24778284, 24779019..24779338,24780197..24780341,24781051..24782289) /locus_tag="TCM_029886" /note="dbxref frave:gene02408; paralog of Thecc1EG031426t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY28262.1" /db_xref="TAIR:AT4G21705.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84JR3" /translation="MSKITTSSLSPRTKGAAPFLWKTYALLEEGEEGAETADDRKKIV SWNAEGTGFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYVIGLSMNGQKAEFRCRD LNPGLSGESRQGFKKTSSKRWEFRHEKFQRGCKHMLVEITRKKMEPSVFPAFLKASDE DKANHAEENSCQTLLEENEILRREKVELQTQIAQFKALEVKLLDSLAQHMGNTNHKER RISPLGSPDKSVEPELEDWLKNGKKIRVAELQRIIHDLRKRKRFTQALEVSEWMNKKG ICTFSHTEHAVQLDLIGRVRGFLSAESYFDSLKDQDKTDKTYGALLNCYVRQRQTDKS LSHLQKMKDLGFTSSPLTYNGIMCLYTNIGQHEKVPDIMREMKENKVSPDNFSYRICI NAYGVMSDLEGMERILKEMESQSHIKMDWNTYAVVANFCIKAGLTERAIDALKKSEQK LDNKDGTAFNHLISLYANLGNKAEVLRLWGLEKASCKRYINKDFITMLQSLVKLDAFE EAEKVLEEWASSGNCYDFRVPSIIIIGYAEKGLHEKSEAMLENLMEKGKVTTPNSWGV VAAGYLDKGQVRKALECMKTALFLTVENKGWRPNLRVITSILEWLGNEGSIQDAEDFV ASLRTVIPVDRKMYNALLKATIRDGKGVDKLLDLMKADKIDEDEETKTILAMKSS" gene complement(24782396..24785598) /locus_tag="TCM_029887" /note="dbxref CacaoGD:Thecc1EG029887" mRNA complement(join(24782396..24783926,24784869..24784943, 24785034..24785598)) /locus_tag="TCM_029887" /product="Glutaredoxin S17" /inference="alignment:exonerate- protein:2:ricco:29851.m002405" /inference="similar to AA sequence:ricco:29851.m002405" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05469t00001" CDS complement(join(24782718..24783926,24784869..24784943, 24785034..24785219)) /locus_tag="TCM_029887" /note="dbxref ricco:29851.m002405" /codon_start=1 /product="Glutaredoxin S17" /protein_id="EOY28263.1" /db_xref="TAIR:AT4G04950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2W2" /translation="MGGGGGGGSVKDVKSKGELDSLRQSGAPVILHFWASWCEPSKHM DQVFSHLSTDFPNAHFIRIEAEEQPQISEEYSVSAVPFFVFFKDGKVVDKLEGADPSS LANKVAKVAGSINPGEAAAPASLGMAAGPTVLETVQDLAKENGSSQIRNQVQPGLSDT LKTRLQQLIDSHPVMLFMKGSPEEPKCGFSRKVVDILNDERVKFGTFDIISDNEVREG LKKFSNWPTFPQLYCKGELLGGCDIVIAMHESGELKEVFRDHGVDVSGTEQGTGGISA PSGLSTNLASRLQSLINSSPVMLFMKGKPDEPKCGFSHKVVEILEQEKVDFKSFDILL DDEVRQGLKVLSNWSSYPQLYIKGELIGGSDIVLEMQKSGELRRVLAEKGITKKESIE DRLRSLISSSPVMLFMKGTPDAPRCGFSSKVVNALREEGVSFGSFDILTDEEVRQGLK VFSNWPTFPQLYYKGELIGGCDIVLELRNNGELKATLSE" gene complement(24785646..24792627) /locus_tag="TCM_029888" /note="dbxref CacaoGD:Thecc1EG029888" mRNA complement(join(24785646..24786036,24786128..24786198, 24786280..24786386,24786524..24786591,24787000..24787056, 24787187..24787269,24787746..24787990,24788222..24788265, 24788855..24788932,24789219..24789244,24789681..24790524, 24791436..24791925,24792520..24792627)) /locus_tag="TCM_029888" /product="Smr domain-containing protein YPL199C, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene31251" /inference="similar to AA sequence:ricco:29851.m002404" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04901t00001" mRNA complement(join(24785758..24786036,24786128..24786198, 24786280..24786386,24786524..24786591,24787000..24787056, 24787187..24787269,24787746..24787990,24788222..24788265, 24788855..24788935,24789219..24789244,24789681..24790524, 24791436..24791727)) /locus_tag="TCM_029888" /product="Smr domain-containing protein YPL199C, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene31251" /inference="similar to AA sequence:ricco:29851.m002404" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7375t2; inference alignment:Newbler:10:TSA:cgbaB_g04901t00001" CDS complement(join(24785920..24786036,24786128..24786198, 24786280..24786386,24786524..24786591,24787000..24787056, 24787187..24787269,24787746..24787990,24788222..24788265, 24788855..24788932,24789219..24789244,24789681..24790512)) /locus_tag="TCM_029888" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29851.m002404" /codon_start=1 /product="Smr domain-containing protein YPL199C, putative isoform 1" /protein_id="EOY28264.1" /db_xref="TAIR:AT3G15390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2W3" /translation="MEVSGLNGLQYDEEKALTSLLDAFGSVFSLNDIASAYCEAGRNA DLAGKILFEMQGSTSSVATDASACKMKYDQTSKSCGNKSQTYYQANGGFIVPKENGQP LSAAGDASNGEVKSDESSESSCGKNSQNYCQANGGFTAPKQECQPVSAASDSSNGEAK NDGPSESFCSNSLQSSWQANGDLRAPKQKRRPVSGGTVSSMLGKGYMKSVPLASGSYP GTKPFKVDSEELPMSKVWGEGLKSSPLKEERLHKDMEDFLFKMLGEGFQLDKDVIRDV LDSCGYDMQKSMEKLLDRSAVNLDKENKFLGESSKKNNVMHTRAEGPSQEKNSDLSAN GGELTRLQKDRNDLQQDVLAAFFKGPERFDELPRRRTGSAKRPIALGELVEGPLIDFP AEQKADGVCFQEVEKDDEDEEDSFQALQRAVKEYRGTMKEYYKAAVDAFAKGDPDQAN RFLEQGQFFREKARQADEESNQKIFETRNTNTDDVMRLELHDLGAREAIRHLKSHLSL LAGIPLLKYLKVIVETNEEDSSKGSRRRLVMKLLEKESISWSEGETPGVVMIRMDNIN PKRLSFAKK" CDS complement(join(24785920..24786036,24786128..24786198, 24786280..24786386,24786524..24786591,24787000..24787056, 24787187..24787269,24787746..24787990,24788222..24788265, 24788855..24788935,24789219..24789244,24789681..24790512)) /locus_tag="TCM_029888" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29851.m002404" /codon_start=1 /product="Smr domain-containing protein YPL199C, putative isoform 2" /protein_id="EOY28265.1" /db_xref="TAIR:AT3G15390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2W3" /translation="MEVSGLNGLQYDEEKALTSLLDAFGSVFSLNDIASAYCEAGRNA DLAGKILFEMQGSTSSVATDASACKMKYDQTSKSCGNKSQTYYQANGGFIVPKENGQP LSAAGDASNGEVKSDESSESSCGKNSQNYCQANGGFTAPKQECQPVSAASDSSNGEAK NDGPSESFCSNSLQSSWQANGDLRAPKQKRRPVSGGTVSSMLGKGYMKSVPLASGSYP GTKPFKVDSEELPMSKVWGEGLKSSPLKEERLHKDMEDFLFKMLGEGFQLDKDVIRDV LDSCGYDMQKKSMEKLLDRSAVNLDKENKFLGESSKKNNVMHTRAEGPSQEKNSDLSA NGGELTRLQKDRNDLQQDVLAAFFKGPERFDELPRRRTGSAKRPIALGELVEGPLIDF PAEQKADGVCFQEVEKDDEDEEDSFQALQRAVKEYRGTMKEYYKAAVDAFAKGDPDQA NRFLEQGQFFREKARQADEESNQKIFETRNTNTDDVMRLELHDLGAREAIRHLKSHLS LLAGIPLLKYLKVIVETNEEDSSKGSRRRLVMKLLEKESISWSEGETPGVVMIRMDNI NPKRLSFAKK" mRNA complement(join(24786363..24786386,24786524..24786591, 24787000..24787269,24787746..24787990,24788222..24788265, 24788855..24788932,24789219..24789244,24789681..24790524, 24791436..24791629)) /locus_tag="TCM_029888" /product="Smr domain-containing protein YPL199C, putative isoform 3" /inference="alignment:exonerate-protein:2:frave:gene31251" /inference="similar to AA sequence:Phytozome:POPTR_0004s04210.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc832t3; inference alignment:Newbler:10:TSA:cgbaB_g04901t00001" mRNA complement(join(24786363..24786386,24786524..24786591, 24787000..24787056,24787187..24787990,24788222..24788265, 24788855..24788932,24789219..24789244,24789681..24790524, 24791436..24791629)) /locus_tag="TCM_029888" /product="Smr domain-containing protein YPL199C, putative isoform 4" /inference="alignment:exonerate-protein:2:frave:gene31251" /inference="similar to AA sequence:Phytozome:POPTR_0004s04210.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc832t8; inference alignment:Newbler:10:TSA:cgbaB_g04901t00001" CDS complement(join(24787139..24787269,24787746..24787990, 24788222..24788265,24788855..24788932,24789219..24789244, 24789681..24790512)) /locus_tag="TCM_029888" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Smr domain-containing protein YPL199C, putative isoform 3" /protein_id="EOY28266.1" /db_xref="Phytozome:POPTR_0004s04210.1" /db_xref="TAIR:AT3G15390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2W3" /translation="MEVSGLNGLQYDEEKALTSLLDAFGSVFSLNDIASAYCEAGRNA DLAGKILFEMQGSTSSVATDASACKMKYDQTSKSCGNKSQTYYQANGGFIVPKENGQP LSAAGDASNGEVKSDESSESSCGKNSQNYCQANGGFTAPKQECQPVSAASDSSNGEAK NDGPSESFCSNSLQSSWQANGDLRAPKQKRRPVSGGTVSSMLGKGYMKSVPLASGSYP GTKPFKVDSEELPMSKVWGEGLKSSPLKEERLHKDMEDFLFKMLGEGFQLDKDVIRDV LDSCGYDMQKSMEKLLDRSAVNLDKENKFLGESSKKNNVMHTRAEGPSQEKNSDLSAN GGELTRLQKDRNDLQQDVLAAFFKGPERFDELPRRRTGSAKRPIALGELVEGPLIDFP AEQKADGVCFQEVEKDDEDEEDSFQALQRAVKEYRGTMKEYYKAVSLMFLKYWSFVSA C" CDS complement(join(24787672..24787990,24788222..24788265, 24788855..24788932,24789219..24789244,24789681..24790512)) /locus_tag="TCM_029888" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Smr domain-containing protein YPL199C, putative isoform 4" /protein_id="EOY28267.1" /db_xref="Phytozome:POPTR_0004s04210.1" /db_xref="TAIR:AT3G15390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2W3" /translation="MEVSGLNGLQYDEEKALTSLLDAFGSVFSLNDIASAYCEAGRNA DLAGKILFEMQGSTSSVATDASACKMKYDQTSKSCGNKSQTYYQANGGFIVPKENGQP LSAAGDASNGEVKSDESSESSCGKNSQNYCQANGGFTAPKQECQPVSAASDSSNGEAK NDGPSESFCSNSLQSSWQANGDLRAPKQKRRPVSGGTVSSMLGKGYMKSVPLASGSYP GTKPFKVDSEELPMSKVWGEGLKSSPLKEERLHKDMEDFLFKMLGEGFQLDKDVIRDV LDSCGYDMQKSMEKLLDRSAVNLDKENKFLGESSKKNNVMHTRAEGPSQEKNSDLSAN GGELTRLQKDRNDLQQDVLAAFFKGPERFDELPRRRTGSAKRPIALGELVEGPLIDFP AEQKADGVCFQEVEKDGMYSCPFHLSLSNQVLWNMLVGGR" gene 24792722..24795571 /locus_tag="TCM_029889" /note="dbxref CacaoGD:Thecc1EG029889" mRNA join(24792722..24793589,24794885..24795571) /locus_tag="TCM_029889" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS join(24793253..24793589,24794885..24795360) /locus_tag="TCM_029889" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28268.1" /translation="MCSGRMVGFSAMDESVNLNQPTNINNSTHDHVVSNSSPTLPSSV VDDGFGSPDDCNNGCDCNDDGNDNNGCEGVEIFGGCDFVYNCIGPTGDNAISELTRMI KELTQRLDDKVLLLVLGAMPTSSAARDASSFKDPKNHGQGSGGTAVSGQGQEKVGLFP GILGFGIPPFRIEGGVHGGGGDNFPGIGVGGDICLGCSGNEGKGFLINNFGQPFYCLP VKECPEGDCDTHIGSINQVASNWPNRETNRRVDHKHGANGVRSTSATAPASG" gene complement(24795463..24797273) /locus_tag="TCM_029890" /note="dbxref CacaoGD:Thecc1EG029890" mRNA complement(join(24795463..24795937,24796034..24796154, 24796242..24796482,24796938..24797273)) /locus_tag="TCM_029890" /product="TSJT1-like protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g07930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031380t1" /inference="similar to AA sequence:Phytozome:Glyma15g07930.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10226t00001" CDS complement(join(24795738..24795937,24796034..24796154, 24796242..24796482,24796938..24797143)) /locus_tag="TCM_029890" /note="paralog of Thecc1EG031380t1" /codon_start=1 /product="TSJT1-like protein" /protein_id="EOY28269.1" /db_xref="Phytozome:Glyma15g07930.1" /db_xref="TAIR:AT4G27450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3HVL7" /translation="MLAVFEKAIGNPPEELRLPSVGLDLEGKKTLEEILGTFRLLWPQ STLYHLSNGNFMALSHEAESPLHPRSMVVMDDIFCIFVGNLANMPELRRHYGLSRQAT EAMVVIEAYKVLRDRAPYPPDQVIKDLEGKFAFILFDAKSVTLFVARDREGSVELKWG MAGDGSLVFSDDPNTVQEACGKSCAPFPPGCIFMNGNGLISFDHPLHKVKAIAREDDD GKICGVIFQVDLFTRLPSIPRTGSAANWADITVQEGE" gene complement(24797443..24802624) /locus_tag="TCM_029891" /note="dbxref CacaoGD:Thecc1EG029891" mRNA complement(join(24797443..24798034,24798838..24799287, 24799562..24800086,24800168..24801128,24801910..24802624)) /locus_tag="TCM_029891" /product="DNA mismatch repair protein MutS isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04200.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04200.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2564t2" mRNA complement(join(24797521..24798034,24799562..24800086, 24800168..24801128,24801910..24802290)) /locus_tag="TCM_029891" /product="DNA mismatch repair protein MutS, type 2, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04200.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04200.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7365t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2564t2" CDS complement(join(24797723..24798034,24798838..24799287, 24799562..24800086,24800168..24801128,24801910..24802427)) /locus_tag="TCM_029891" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNA mismatch repair protein MutS isoform 1" /protein_id="EOY28270.1" /db_xref="Phytozome:POPTR_0004s04200.1" /db_xref="TAIR:AT1G65070.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS53" /translation="MQLPTQFLSLQNPPLLSHRHRHYSLSTRPFKLKLIGSLANSPES RSSELATALQSETLKTLEWPSLCNYLSPFTSTSMALSLTKSAAFPIGQSQEESQKLLD QTTAALHAMEALKSEPLDLSAIEDVSGILRSAGSGQLLTVRELCRVRRTLGAARAVSE KLAAVAEGGSLKRYTPLLEILQNCNFQKELEKKIGFCIDCNLSTVLDRASEELELIRA ERKRNMGNLDSLLKEVSVNVFQAGGIDRPLITKRRSRMCVGVRASHKYLLPDGVVLNV SSSGATYFMEPKEAVELNNMEVKLSNSEKAEEMAILSLLTSEIAESEAEIKYLLDKLL EVDLAFAKAAYAQWMNGVCPIFSSTESEVLISNGADNAWSVDIEGIQHPLLLGSSLRN FTDFIASSSGDPSITEEKSGAMAAVKSSKGVSSFPVPIDIKVQCGTRVVVISGPNTGG KTASMKTLGLASLMSKAGMYLPAKKQPRLPWFDLVLADIGDSQSLERSLSTFSGHISR ICEILEIASKESLVLIDEIGSGTDPLEGVALSTSILQYLKTRVNLAVVTTHYADLSRL KGKDSQYENAALEFSLETLQPTYQILWGSIGNSNALTIANSIGFDKKIIERAKKWVDS LKPEKQQERKVVLYQSLMEERSRLEAQFRRAESLHADIMGLYHEVRGEADNLEEREIA LRAKETEKVQQELNAAKSQIDTVVLEFENLLQTANSDEFNLLIRKSESAINSIVKAHR PGDSFSFTETDTSSYQPQSGEQVHVKGLGNKLATVVEASEDDNTLLVQYGKIRVRVEK SNVRPISNGKKMARRSMKKRGEQSRELASNLDATNSAAIAYGPLIQTSKNTVDLLGMR VEEAAHHLDMAISARGSNSVLFIVHGMGTGVVKEQALEILRNHPRVAKYEQENPMNYG CTVAYIK" CDS complement(join(24797723..24798034,24799562..24800086, 24800168..24801128,24801910..24802196)) /locus_tag="TCM_029891" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA mismatch repair protein MutS, type 2, putative isoform 2" /protein_id="EOY28271.1" /db_xref="Phytozome:POPTR_0004s04200.1" /db_xref="TAIR:AT1G65070.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS53" /translation="MALSLTKSAAFPIGQSQEESQKLLDQTTAALHAMEALKSEPLDL SAIEDVSGILRSAGSGQLLTVRELCRVRRTLGAARAVSEKLAAVAEGGSLKRYTPLLE ILQNCNFQKELEKKIGFCIDCNLSTVLDRASEELELIRAERKRNMGNLDSLLKEVSVN VFQAGGIDRPLITKRRSRMCVGVRASHKYLLPDGVVLNVSSSGATYFMEPKEAVELNN MEVKLSNSEKAEEMAILSLLTSEIAESEAEIKYLLDKLLEVDLAFAKAAYAQWMNGVC PIFSSTESEVLISNGADNAWSVDIEGIQHPLLLGSSLRNFTDFIASSSGDPSITEEKS GAMAAVKSSKGVSSFPVPIDIKVQCGTRVVVISGPNTGGKTASMKTLGLASLMSKAGM YLPAKKQPRLPWFDLVLADIGDSQSLERSLSTFSGHISRICEILEIASKESLVLIDEI GSGTDPLEGVALSTSILQYLKTRVNLAVVTTHYADLSRLKGKDSQYENAALEFSLETL QPTYQILWGSIGNSNALTIANSIGFDKKIIERAKKWVDSLKPEKQQERKVVLYQSLME ERSRLEAQFRRAESLHADIMGLYHEGEQSRELASNLDATNSAAIAYGPLIQTSKNTVD LLGMRVEEAAHHLDMAISARGSNSVLFIVHGMGTGVVKEQALEILRNHPRVAKYEQEN PMNYGCTVAYIK" gene complement(24802683..24808223) /locus_tag="TCM_029892" /note="dbxref CacaoGD:Thecc1EG029892" mRNA complement(join(24802683..24803093,24803532..24803632, 24804580..24804733,24804897..24805023,24805180..24805325, 24805535..24805594,24805870..24805955,24806029..24806065, 24806155..24806231,24806578..24806651,24806853..24806967, 24807148..24807241,24807581..24807771)) /locus_tag="TCM_029892" /product="Allantoinase, putative isoform 5" /inference="alignment:exonerate-protein:2:frave:gene02414" /inference="similar to AA sequence:Phytozome:POPTR_0004s04190.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc652t2; inference alignment:Newbler:10:TSA:cgbaP2_g05245t00001" mRNA complement(join(24802704..24803093,24803532..24803630, 24803728..24803838,24804376..24804486,24804578..24804733, 24804897..24805023,24805180..24805325,24805535..24805594, 24805870..24805955,24806029..24806065,24806155..24806231, 24806578..24806651,24806853..24806967,24807148..24807241, 24807750..24808223)) /locus_tag="TCM_029892" /product="Allantoinase, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene02414" /inference="similar to AA sequence:ricco:29851.m002399" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05245t00001" mRNA complement(join(24802753..24803093,24803728..24803838, 24804376..24804486,24804578..24804733,24804897..24805023, 24805180..24805325,24805535..24805594,24805870..24805955, 24806029..24806065,24806155..24806231,24806578..24806651, 24806853..24806967,24807148..24807241,24807750..24807873)) /locus_tag="TCM_029892" /product="Allantoinase, putative isoform 3" /inference="alignment:exonerate-protein:2:frave:gene02414" /inference="similar to AA sequence:ricco:29851.m002399" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc661t7; inference alignment:Newbler:10:TSA:cgbaP2_g05245t00001" mRNA complement(join(24802753..24803093,24803532..24803630, 24803728..24803838,24804376..24804486,24804578..24804733, 24804897..24805023,24805180..24805325,24805535..24805594, 24805870..24805955,24806029..24806065,24806155..24806231, 24806578..24806651,24806853..24806967,24807148..24807241, 24807581..24807779)) /locus_tag="TCM_029892" /product="Allantoinase, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene02414" /inference="similar to AA sequence:ricco:29851.m002399" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc661t4; inference alignment:Newbler:10:TSA:cgbaP2_g05245t00001" CDS complement(join(24802965..24803093,24803728..24803838, 24804376..24804486,24804578..24804733,24804897..24805023, 24805180..24805325,24805535..24805594,24805870..24805955, 24806029..24806065,24806155..24806231,24806578..24806651, 24806853..24806967,24807148..24807241,24807750..24807833)) /locus_tag="TCM_029892" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29851.m002399" /codon_start=1 /product="Allantoinase, putative isoform 3" /protein_id="EOY28274.1" /db_xref="TAIR:AT4G04955.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RZ78" /translation="MDWQWKLLPLLTLLASFLFLYYIQDSFKPFQSDCSLLPYSHYWI ASKHIVTPQGIISGAVEVKGGNIISIVKDKDWNGKSKQVVDYGYAVVMPGLIDVHAHL DDPGRAEWEGFPSGTKAAAAGGITTLIDMPLNSFPSTVSTETLKLKIEAAEKRIFVDV GFWGGLVPGNAFNATALEGLLNAGVLGLKSFMCPSGINDFPMTDANHIKAGLSVLAKY RRPLLVHSEIQQDVESYLQDEDGDDPRLYSTYLKTRPPSWEEAAIRELLTVTKDTRIG GPAEGAHLHVVHLSDASSSLDLIKEAKRRGDSITVETCPHYLAFSAEEIPDGDTRFKC APPIRDAANKENLWNALMEGHIDMLSSDHSPTVPELKLLNDGNFLRAWGGISSIQFVL PVTWSYGRKFGVTLEQLALWWSERPAKLAQQHSKSISAYIGKRLSGKVLATFVRGNLV YNEGNHAAAACGALILAT" CDS complement(join(24802965..24803093,24803532..24803630, 24803728..24803838,24804376..24804486,24804578..24804733, 24804897..24805023,24805180..24805325,24805535..24805594, 24805870..24805955,24806029..24806065,24806155..24806231, 24806578..24806651,24806853..24806967,24807148..24807241, 24807750..24807833)) /locus_tag="TCM_029892" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29851.m002399" /codon_start=1 /product="Allantoinase, putative isoform 1" /protein_id="EOY28272.1" /db_xref="TAIR:AT4G04955.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RZ78" /translation="MDWQWKLLPLLTLLASFLFLYYIQDSFKPFQSDCSLLPYSHYWI ASKHIVTPQGIISGAVEVKGGNIISIVKDKDWNGKSKQVVDYGYAVVMPGLIDVHAHL DDPGRAEWEGFPSGTKAAAAGGITTLIDMPLNSFPSTVSTETLKLKIEAAEKRIFVDV GFWGGLVPGNAFNATALEGLLNAGVLGLKSFMCPSGINDFPMTDANHIKAGLSVLAKY RRPLLVHSEIQQDVESYLQDEDGDDPRLYSTYLKTRPPSWEEAAIRELLTVTKDTRIG GPAEGAHLHVVHLSDASSSLDLIKEAKRRGDSITVETCPHYLAFSAEEIPDGDTRFKC APPIRDAANKENLWNALMEGHIDMLSSDHSPTVPELKLLNDGNFLRAWGGISSIQFVL PVTWSYGRKFGVTLEQLALWWSERPAKLAQQHSKGAIAIGNHADIVVWEPEVEFDLNA DHPMYVKNPSISAYIGKRLSGKVLATFVRGNLVYNEGNHAAAACGALILAT" CDS complement(join(24802965..24803093,24803532..24803632, 24804580..24804733,24804897..24805023,24805180..24805325, 24805535..24805594,24805870..24805955,24806029..24806065, 24806155..24806231,24806578..24806651,24806853..24806872)) /locus_tag="TCM_029892" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Allantoinase, putative isoform 5" /protein_id="EOY28276.1" /db_xref="Phytozome:POPTR_0004s04190.1" /db_xref="TAIR:AT4G04955.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RZ78" /translation="MPGLIDVHAHLDDPGRAEWEGFPSGTKAAAAGGITTLIDMPLNS FPSTVSTETLKLKIEAAEKRIFVDVGFWGGLVPGNAFNATALEGLLNAGVLGLKSFMC PSGINDFPMTDANHIKAGLSVLAKYRRPLLVHSEIQQDVESYLQDEDGDDPRLYSTYL KTRPPSWEEAAIRELLTVTKDTRIGGPAEGAHLHVVHLSDASSSLDLIKEAKRRGDSI TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKENLWNALKGAIAIGNHADIVVWE PEVEFDLNADHPMYVKNPSISAYIGKRLSGKVLATFVRGNLVYNEGNHAAAACGALIL AT" CDS complement(join(24802965..24803093,24803532..24803630, 24803728..24803838,24804376..24804486,24804578..24804733, 24804897..24805023,24805180..24805325,24805535..24805594, 24805870..24805955,24806029..24806065,24806155..24806231, 24806578..24806651,24806853..24806872)) /locus_tag="TCM_029892" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29851.m002399" /codon_start=1 /product="Allantoinase, putative isoform 2" /protein_id="EOY28273.1" /db_xref="TAIR:AT4G04955.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RZ78" /translation="MPGLIDVHAHLDDPGRAEWEGFPSGTKAAAAGGITTLIDMPLNS FPSTVSTETLKLKIEAAEKRIFVDVGFWGGLVPGNAFNATALEGLLNAGVLGLKSFMC PSGINDFPMTDANHIKAGLSVLAKYRRPLLVHSEIQQDVESYLQDEDGDDPRLYSTYL KTRPPSWEEAAIRELLTVTKDTRIGGPAEGAHLHVVHLSDASSSLDLIKEAKRRGDSI TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKENLWNALMEGHIDMLSSDHSPTV PELKLLNDGNFLRAWGGISSIQFVLPVTWSYGRKFGVTLEQLALWWSERPAKLAQQHS KGAIAIGNHADIVVWEPEVEFDLNADHPMYVKNPSISAYIGKRLSGKVLATFVRGNLV YNEGNHAAAACGALILAT" mRNA complement(join(<24803607..24803630,24803728..24803838, 24804376..24804486,24804578..24804733,24804897..24805023, 24805180..24805325,24805535..24805594,24805870..24805955, 24806029..24806065,24806155..24806231,24806578..24806651, 24806853..24806967,24807148..24807241,24807581..24807771)) /locus_tag="TCM_029892" /product="Allantoinase isoform 4" /inference="alignment:exonerate-protein:2:frave:gene02414" /inference="similar to AA sequence:ricco:29851.m002399" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc652t6; inference alignment:Newbler:10:TSA:cgbaP2_g05245t00001" CDS complement(join(<24803607..24803630,24803728..24803838, 24804376..24804486,24804578..24804733,24804897..24805023, 24805180..24805325,24805535..24805594,24805870..24805955, 24806029..24806065,24806155..24806231,24806578..24806651, 24806853..24806872)) /locus_tag="TCM_029892" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29851.m002399" /codon_start=1 /product="Allantoinase isoform 4" /protein_id="EOY28275.1" /db_xref="TAIR:AT4G04955.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RZ78" /translation="MPGLIDVHAHLDDPGRAEWEGFPSGTKAAAAGGITTLIDMPLNS FPSTVSTETLKLKIEAAEKRIFVDVGFWGGLVPGNAFNATALEGLLNAGVLGLKSFMC PSGINDFPMTDANHIKAGLSVLAKYRRPLLVHSEIQQDVESYLQDEDGDDPRLYSTYL KTRPPSWEEAAIRELLTVTKDTRIGGPAEGAHLHVVHLSDASSSLDLIKEAKRRGDSI TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKENLWNALMEGHIDMLSSDHSPTV PELKLLNDGNFLRAWGGISSIQFVLPVTWSYGRKFGVTLEQLALWWSERPAKLAQQHS KGAIAIGNH" mobile_element 24808264..24808841 /note="source:scaffold_3_CACTA_0377 4707 5279" /mobile_element_type="transposon:TIR/CACTA" gene 24809866..24812954 /locus_tag="TCM_029893" /note="dbxref CacaoGD:Thecc1EG029893" mRNA join(24809866..24810089,24810605..24810658, 24811193..24811296,24812433..24812471,24812562..24812749) /locus_tag="TCM_029893" /product="Defensin-like protein 165 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29851.m002398" /inference="similar to AA sequence:ricco:29851.m002398" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16774t1" mRNA join(24809973..24810089,24810605..24810658, 24811193..24811296,24812433..24812471,24812562..24812954) /locus_tag="TCM_029893" /product="Defensin-like protein 165 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29851.m002398" /inference="similar to AA sequence:ricco:29851.m002398" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14176t00001; alternateUTRof:Thecc1EG029893t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16774t1" CDS join(24810014..24810089,24810605..24810658, 24811193..24811296,24812433..24812471,24812562..24812705) /locus_tag="TCM_029893" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29851.m002398" /codon_start=1 /product="Defensin-like protein 165 isoform 1" /protein_id="EOY28277.1" /db_xref="TAIR:AT4G21720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2W6" /translation="MLPPLWASPCGNQCTHKYATLMQIPWRVFCKKGCDADGETWEEC LSECEEICYKDPVLKDQKWSAYIDRSPGAANYSEECFHACVAGCGFKFEMCQEKVDQV RPNRPLPPKPPPVEKPPKPPVTNPDEPAEDVPSTSA" CDS join(24810014..24810089,24810605..24810658, 24811193..24811296,24812433..24812471,24812562..24812705) /locus_tag="TCM_029893" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29851.m002398" /codon_start=1 /product="Defensin-like protein 165 isoform 1" /protein_id="EOY28278.1" /db_xref="TAIR:AT4G21720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2W6" /translation="MLPPLWASPCGNQCTHKYATLMQIPWRVFCKKGCDADGETWEEC LSECEEICYKDPVLKDQKWSAYIDRSPGAANYSEECFHACVAGCGFKFEMCQEKVDQV RPNRPLPPKPPPVEKPPKPPVTNPDEPAEDVPSTSA" gene 24813619..24818824 /locus_tag="TCM_029896" /note="dbxref CacaoGD:Thecc1EG029896" mRNA join(24813619..24813982,24814163..24814327, 24814541..24814609,24814885..24814978,24815169..24815269, 24815377..24815422,24815510..24815569,24816084..24816152, 24816443..24816526,24816624..24816707,24816826..24816911, 24817568..24817658,24817798..24817878,24818054..24818128, 24818219..24818824) /locus_tag="TCM_029896" /product="Transcription factor-related isoform 1" /inference="alignment:exonerate- protein:2:ricco:29851.m002397" /inference="similar to AA sequence:ricco:29851.m002397" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06440t00001" mRNA join(24813676..24813982,24814163..24814327, 24814541..24814609,24814885..24814978,24815169..24815269, 24815377..24815422,24815510..24815569,24816084..24816152, 24816443..24816526,24816624..24816707,24816826..24816911, 24817568..24817658,24817816..24817878,24818054..24818128, 24818219..24818781) /locus_tag="TCM_029896" /product="Transcription factor-related isoform 4" /inference="alignment:exonerate- protein:2:ricco:29851.m002397" /inference="similar to AA sequence:ricco:29851.m002397" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc390t2_C1; inference alignment:Newbler:10:TSA:cgbaB_g06440t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc71t26_C2" mRNA join(24813676..24813982,24814076..24814327, 24814541..24814609,24814885..24814978,24815169..24815269, 24815377..24815422,24815510..24815569,24816084..24816152, 24816443..24816526,24816624..24816707,24816826..24816911, 24817568..24817658,24817798..24817878,24818054..24818128, 24818219..24818751) /locus_tag="TCM_029896" /product="Transcription factor-related isoform 2" /inference="alignment:exonerate- protein:2:ricco:29851.m002397" /inference="similar to AA sequence:ricco:29851.m002397" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc390t7_C2; inference alignment:Newbler:10:TSA:cgbaB_g06440t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc71t26_C2" CDS join(24813870..24813982,24814163..24814327, 24814541..24814609,24814885..24814978,24815169..24815269, 24815377..24815422,24815510..24815569,24816084..24816152, 24816443..24816526,24816624..24816707,24816826..24816911, 24817568..24817658,24817798..24817878,24818054..24818128, 24818219..24818356) /locus_tag="TCM_029896" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29851.m002397" /codon_start=1 /product="Transcription factor-related isoform 1" /protein_id="EOY28279.1" /db_xref="TAIR:AT4G17020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2W7" /translation="MPQVKIIAKNFMDMVASLPAIKLDMLYRNQFICEAILRSMPPLA KKYVLQMLYIDVPVTAKSLEEWVLADGSSKHKVAIDRLIQLRILEVIDRKKETSYKLN PTFQTNLRKHLIYGGILPREPMPSNVTVRLPTSEELDAYAHEQWECFLLQLISSGQAE KPTNFSSSMMRIFQRGLLCQREKEAPRLTESGFQFLLMDTNAQLWYIIREYISNSEEQ GVDQADLIAFLLELSFHTTGEAYNMNTLTDDQRAMIKDLSDLGLVKLQQGRKDSWFIP TKLATNLSVSLTDSSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRVEYQLPNLIV GAITKESLYNAFENGIAAEQIITFLQQNAHPRVAEKLPSVPENVTDQIRLWETDLNRV EMTPAHFYDDFPSRDVFEAASDLARVHCGLLWEDAKKMRMVVKAEIHMLMREQLRGQN K" CDS join(24813870..24813982,24814163..24814327, 24814541..24814609,24814885..24814978,24815169..24815269, 24815377..24815422,24815510..24815569,24816084..24816152, 24816443..24816526,24816624..24816707,24816826..24816911, 24817568..24817658,24817816..24817878,24818054..24818128, 24818219..24818356) /locus_tag="TCM_029896" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29851.m002397" /codon_start=1 /product="Transcription factor-related isoform 4" /protein_id="EOY28282.1" /db_xref="TAIR:AT4G17020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2W7" /translation="MPQVKIIAKNFMDMVASLPAIKLDMLYRNQFICEAILRSMPPLA KKYVLQMLYIDVPVTAKSLEEWVLADGSSKHKVAIDRLIQLRILEVIDRKKETSYKLN PTFQTNLRKHLIYGGILPREPMPSNVTVRLPTSEELDAYAHEQWECFLLQLISSGQAE KPTNFSSSMMRIFQRGLLCQREKEAPRLTESGFQFLLMDTNAQLWYIIREYISNSEEQ GVDQADLIAFLLELSFHTTGEAYNMNTLTDDQRAMIKDLSDLGLVKLQQGRKDSWFIP TKLATNLSVSLTDSSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRVEYQLPNLIV GAITKESLYNAFENGIAAEQQNAHPRVAEKLPSVPENVTDQIRLWETDLNRVEMTPAH FYDDFPSRDVFEAASDLARVHCGLLWEDAKKMRMVVKAEIHMLMREQLRGQNK" mRNA join(24813954..24813982,24814076..24814327, 24814541..24814609,24814885..24814978,24815169..24815269, 24815377..24815422,24815510..24815569,24816084..24816152, 24816443..24816526,24816624..24816707,24816826..24816911, 24817568..24817658,24817816..24817878,24818054..24818128, 24818219..24818743) /locus_tag="TCM_029896" /product="Transcription factor-related isoform 3" /inference="alignment:exonerate- protein:2:ricco:29851.m002397" /inference="similar to AA sequence:ricco:29851.m002397" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc395t1_C2; inference alignment:Newbler:10:TSA:cgbaB_g06440t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc71t26_C2" CDS join(24814167..24814327,24814541..24814609, 24814885..24814978,24815169..24815269,24815377..24815422, 24815510..24815569,24816084..24816152,24816443..24816526, 24816624..24816707,24816826..24816911,24817568..24817658, 24817798..24817878,24818054..24818128,24818219..24818356) /locus_tag="TCM_029896" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29851.m002397" /codon_start=1 /product="Transcription factor-related isoform 2" /protein_id="EOY28280.1" /db_xref="TAIR:AT4G17020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2W7" /translation="MPPLAKKYVLQMLYIDVPVTAKSLEEWVLADGSSKHKVAIDRLI QLRILEVIDRKKETSYKLNPTFQTNLRKHLIYGGILPREPMPSNVTVRLPTSEELDAY AHEQWECFLLQLISSGQAEKPTNFSSSMMRIFQRGLLCQREKEAPRLTESGFQFLLMD TNAQLWYIIREYISNSEEQGVDQADLIAFLLELSFHTTGEAYNMNTLTDDQRAMIKDL SDLGLVKLQQGRKDSWFIPTKLATNLSVSLTDSSSRKQGFVVVETNFRMYAYSSSKLH CEILRLFSRVEYQLPNLIVGAITKESLYNAFENGIAAEQIITFLQQNAHPRVAEKLPS VPENVTDQIRLWETDLNRVEMTPAHFYDDFPSRDVFEAASDLARVHCGLLWEDAKKMR MVVKAEIHMLMREQLRGQNK" CDS join(24814167..24814327,24814541..24814609, 24814885..24814978,24815169..24815269,24815377..24815422, 24815510..24815569,24816084..24816152,24816443..24816526, 24816624..24816707,24816826..24816911,24817568..24817658, 24817816..24817878,24818054..24818128,24818219..24818356) /locus_tag="TCM_029896" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29851.m002397" /codon_start=1 /product="Transcription factor-related isoform 3" /protein_id="EOY28281.1" /db_xref="TAIR:AT4G17020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2W7" /translation="MPPLAKKYVLQMLYIDVPVTAKSLEEWVLADGSSKHKVAIDRLI QLRILEVIDRKKETSYKLNPTFQTNLRKHLIYGGILPREPMPSNVTVRLPTSEELDAY AHEQWECFLLQLISSGQAEKPTNFSSSMMRIFQRGLLCQREKEAPRLTESGFQFLLMD TNAQLWYIIREYISNSEEQGVDQADLIAFLLELSFHTTGEAYNMNTLTDDQRAMIKDL SDLGLVKLQQGRKDSWFIPTKLATNLSVSLTDSSSRKQGFVVVETNFRMYAYSSSKLH CEILRLFSRVEYQLPNLIVGAITKESLYNAFENGIAAEQQNAHPRVAEKLPSVPENVT DQIRLWETDLNRVEMTPAHFYDDFPSRDVFEAASDLARVHCGLLWEDAKKMRMVVKAE IHMLMREQLRGQNK" mobile_element complement(24814955..24815006) /note="source:CACAO_M_E26803_F44_scaffold_4 939 988" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24819226..24820951 /locus_tag="TCM_029897" /note="dbxref CacaoGD:Thecc1EG029897" mRNA join(24819226..24819581,24819651..24819659, 24819681..24819786,24819904..24819984,24820074..24820178, 24820394..24820570,24820673..24820702) /locus_tag="TCM_029897" /product="Tetraspanin family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008083t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s05050.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc934t8; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc934t8; inference alignment:Newbler:10:TSA:cgbaL_g02400t00002" mRNA join(24819414..24819581,24819687..24819786, 24819904..24819984,24820074..24820178,24820394..24820570, 24820673..24820951) /locus_tag="TCM_029897" /product="Tetraspanin family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008083t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s05050.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02400t00002; inference alignment:Newbler:10:TSA:cgbaL_g02400t00002" CDS join(24819415..24819581,24819651..24819659, 24819681..24819786,24819904..24819984,24820074..24820178, 24820394..24820570,24820673..24820684) /locus_tag="TCM_029897" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG008083t1" /codon_start=1 /product="Tetraspanin family protein isoform 2" /protein_id="EOY28284.1" /db_xref="Phytozome:POPTR_0011s05050.2" /db_xref="TAIR:AT2G20740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3E1" /translation="MARILKSCMQSILKGVNLIMGMVGIAMILYGFWMVRVWQRDMGG SPFDDFNSTAPCHNSCRFIYTFLGTGITLCFLTCLGHIAADSANGFCLFGYMVIISVL LLVETAIAADILLNSDWEKDLPEDPTGRFHDFKEFVQSNFDIFKWIGLLIILGQGISV LLAMAIRALGPNQCSNYDSDEEFPPARLPLINNNAPQPAYVVGDSPFANKSEAWNTSK " CDS join(24819415..24819581,24819687..24819786, 24819904..24819984,24820074..24820178,24820394..24820570, 24820673..24820684) /locus_tag="TCM_029897" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG008083t1" /codon_start=1 /product="Tetraspanin family protein, putative isoform 1" /protein_id="EOY28283.1" /db_xref="Phytozome:POPTR_0011s05050.2" /db_xref="TAIR:AT2G20740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3E1" /translation="MARILKSCMQSILKGVNLIMGMVGIAMILYGFWMVRVWQRDMGG SPFDDFNSTAPWFIYTFLGTGITLCFLTCLGHIAADSANGFCLFGYMVIISVLLLVET AIAADILLNSDWEKDLPEDPTGRFHDFKEFVQSNFDIFKWIGLLIILGQGISVLLAMA IRALGPNQCSNYDSDEEFPPARLPLINNNAPQPAYVVGDSPFANKSEAWNTSK" gene complement(24820756..24823536) /locus_tag="TCM_029899" /note="dbxref CacaoGD:Thecc1EG029899" mRNA complement(join(24820756..24820781,24821415..24822086, 24822993..24823536)) /locus_tag="TCM_029899" /product="Fatty acid desaturase family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene30403" /inference="similar to AA sequence:frave:gene30403" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc904t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc915t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16770t1" CDS complement(join(24820761..24820781,24821415..24822086, 24822993..24823301)) /locus_tag="TCM_029899" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene30403" /codon_start=1 /product="Fatty acid desaturase family protein isoform 2" /protein_id="EOY28286.1" /db_xref="TAIR:AT4G04930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZPH4" /translation="MTVYEEKKGKTILKEENLLSGEKIRGRRREKRKKENTDKRFVER EREMGRGERREEEKEGVVMANDFFWSYTDEPHASRRRQILSQYPQIKELFGPDPLAFL KISVVVLLQLWTATSLRDAGWLKILAVAYFFGSFLNHNLFLAIHELSHNLAFSTPVYN RWLGIFANLPIGVPMSVTFQKYHLEHHRFQGVDGMDMDVPSYTEAHLVTNVVTKAIWV IFQLFFYALRPVFLKPKPPGYWEFINLFVQIGLDATLVYFCGWKSFAYLILSTFVGGG MHPMAGHFISEHYVFKPDQETYSYYGPLNLLTWSVGYHNEHHDFPRIPGNKLGCVFS" mRNA complement(join(24820882..24822086,24822993..24823413)) /locus_tag="TCM_029899" /product="Fatty acid desaturase family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene30403" /inference="similar to AA sequence:frave:gene30403" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16770t1" CDS complement(join(24821265..24822086,24822993..24823301)) /locus_tag="TCM_029899" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene30403" /codon_start=1 /product="Fatty acid desaturase family protein isoform 1" /protein_id="EOY28285.1" /db_xref="TAIR:AT4G04930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZPH4" /translation="MTVYEEKKGKTILKEENLLSGEKIRGRRREKRKKENTDKRFVER EREMGRGERREEEKEGVVMANDFFWSYTDEPHASRRRQILSQYPQIKELFGPDPLAFL KISVVVLLQLWTATSLRDAGWLKILAVAYFFGSFLNHNLFLAIHELSHNLAFSTPVYN RWLGIFANLPIGVPMSVTFQKYHLEHHRFQGVDGMDMDVPSYTEAHLVTNVVTKAIWV IFQLFFYALRPVFLKPKPPGYWEFINLFVQIGLDATLVYFCGWKSFAYLILSTFVGGG MHPMAGHFISEHYVFKPDQETYSYYGPLNLLTWSVGYHNEHHDFPRIPGNKLHKVKKI APEYYEGLESYKSWSQVIYMYVMDRTVGPFSRMKRKLSKKSE" gene complement(24823780..24827744) /locus_tag="TCM_029900" /note="dbxref CacaoGD:Thecc1EG029900" mRNA complement(join(24823780..24824628,24825829..24826063, 24826157..24826223,24826316..24826466,24827660..24827744)) /locus_tag="TCM_029900" /product="RING/U-box superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g31510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021705t1" /inference="similar to AA sequence:Phytozome:Glyma07g31510.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05396t00001" CDS complement(join(24824418..24824628,24825829..24826063, 24826157..24826223,24826316..24826466,24827660..24827739)) /locus_tag="TCM_029900" /note="paralog of Thecc1EG021705t1" /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="EOY28287.1" /db_xref="Phytozome:Glyma07g31510.1" /db_xref="TAIR:AT3G47160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q337S3" /translation="MYVGSMRKSFKDSLKVLEADIQHANTLASDFPREYDGACVQMRM SYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVI YPSLLQLQRGVTDTEDKKQKAVCMERYRRREDEEYRQLTDVDFEREEECGICMEMNSK IVLPNCNHAMCLKCYREWRSRSQSCPFCRDSLKRVNSGDLWVFTDSRDIIDMATVTRE NLRRLFMYIDKLPLIVPDTIFDTYDSHLR" mobile_element 24830572..24830640 /note="source:scaffold_6_CACTA_0709 2591 2658" /mobile_element_type="transposon:TIR/CACTA" gene 24832248..24835955 /locus_tag="TCM_029901" /note="dbxref CacaoGD:Thecc1EG029901" mRNA join(24832248..24834319,24834622..24834712, 24835079..24835955) /locus_tag="TCM_029901" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29851.m002393" /inference="similar to AA sequence:ricco:29851.m002393" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc523t1" CDS join(24832391..24834319,24834622..24834712, 24835079..24835269) /locus_tag="TCM_029901" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29851.m002393" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /protein_id="EOY28288.1" /translation="MRTLIYKSPIKFRIANSQISPSGFPFRFPSRENLRFRHISRGKC SCIPGRSIDVSPAKASLSAESPSYGGWDDFEPGSWSANSGESTQFRDFLVSIGIDDKK HVFMFLLGLVCALAISRVRVSTIIVFPASVLVFGIGFSFGFVKGGSFNELSSTKRRSK EEILRVYSDKLRNLANFFHGFDVQVNKLKNNIQRAIDSSRITISDLENYVSLVESMRL SASNARNVVEAAVDNVGNSYRENQKPSSKKKEAGEVGLQLLQYLGNFFGEKSVASNPN KVKDDVKSERVDTDLNNQTRGDVSFPAVEDRVSSSPNKRKGVSNQGFAQDSLNNYAIN GDRDSRIEIDMENGKIRSEFLGGRTKRFVDSEEYNYESNRSQFVNTHGISFDSSHGNV SRRWKYDDNLLDSVDFSVRLEHTKTEASFLHEQLLQRSSCRSSHNGKKSENEAYGKRR CYEDDSYLADQLSSHENEVSSSSSKFADDVIFDKYLTEASGLLREAKEYMKGRHDEER VHIILNRSATLLSQAITMKPMSLLAVGQLGNTYLLHGELKLHVSRELRTLLARNDPII GEMPRGRVLKGLDDQFFSRDKIVSLLVSACEECEELLVRAGRKYRLALSIDGDDVRSL YNWGLALSFRAQLIADIGPEAAFDADKLFLAAIDKFDAMMTRGNVHAPDALFRWGVTL QQRCRLRPGNSKEKVKLLQQAKRLYEDALHMDSKNLQVRDALSSCISELNYGYF" mRNA join(24832886..24834319,24834622..24834712, 24835079..24835405) /locus_tag="TCM_029901" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29851.m002393" /inference="similar to AA sequence:Phytozome:POPTR_0011s05020.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc471t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc523t1" CDS join(24833036..24834319,24834622..24834712, 24835079..24835269) /locus_tag="TCM_029901" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 2" /protein_id="EOY28289.1" /db_xref="Phytozome:POPTR_0011s05020.1" /translation="MRLSASNARNVVEAAVDNVGNSYRENQKPSSKKKEAGEVGLQLL QYLGNFFGEKSVASNPNKVKDDVKSERVDTDLNNQTRGDVSFPAVEDRVSSSPNKRKG VSNQGFAQDSLNNYAINGDRDSRIEIDMENGKIRSEFLGGRTKRFVDSEEYNYESNRS QFVNTHGISFDSSHGNVSRRWKYDDNLLDSVDFSVRLEHTKTEASFLHEQLLQRSSCR SSHNGKKSENEAYGKRRCYEDDSYLADQLSSHENEVSSSSSKFADDVIFDKYLTEASG LLREAKEYMKGRHDEERVHIILNRSATLLSQAITMKPMSLLAVGQLGNTYLLHGELKL HVSRELRTLLARNDPIIGEMPRGRVLKGLDDQFFSRDKIVSLLVSACEECEELLVRAG RKYRLALSIDGDDVRSLYNWGLALSFRAQLIADIGPEAAFDADKLFLAAIDKFDAMMT RGNVHAPDALFRWGVTLQQRCRLRPGNSKEKVKLLQQAKRLYEDALHMDSKNLQVRDA LSSCISELNYGYF" gene complement(24835456..24837570) /locus_tag="TCM_029902" /note="dbxref CacaoGD:Thecc1EG029902" mRNA complement(join(24835456..24836940,24837093..24837570)) /locus_tag="TCM_029902" /product="CBS domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031381t1" /inference="similar to AA sequence:ricco:29851.m002392" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16773t1" CDS complement(join(24836100..24836940,24837093..24837445)) /locus_tag="TCM_029902" /note="dbxref ricco:29851.m002392; paralog of Thecc1EG031381t1" /codon_start=1 /product="CBS domain-containing protein" /protein_id="EOY28290.1" /db_xref="TAIR:AT5G53750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2X1" /translation="MAVSLLEREVSDLCLGKPALRSLSISATVGHALSVLKRFGDNYI SVWNCDHRHLPDADKTDAGFEECRCVGKVCMVDIICFLCKEENLSNPGTALQAPVSVL IPKVPGLIRHLEPNASLVEAMDLILEGAQNLVIPLESGTTNSRKKLLQITLSNSTLHN NREYCWLTQEDIIRYLLNSIGLFSPTPVNPINSLNIIDTQNILAVHYDDPASLALPFI AQSLEMQTSVAIVDTDGKLIGEISPFTLNSCGEDVAAAIATLSAGDLMAYIDCGGRPE DLIQLVKERLQERNLEQALELMEEDSGISSGASFSSSYSSSSDEEFGVGRGGRLGGYS ARLVRRSEAIVCYPWSSLVAVMIQALAHRVSYVWVVEDDGTLAGIVTFAGMMKVFRER LRSMA" gene complement(24840486..24842608) /locus_tag="TCM_029903" /note="dbxref CacaoGD:Thecc1EG029903" mRNA complement(join(24840486..24841269,24842103..24842608)) /locus_tag="TCM_029903" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.18 coverage" CDS complement(24840719..24840970) /locus_tag="TCM_029903" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28291.1" /translation="MTDCYLHVSLIRQVAWTLRVLPIPLCCGLCNQARLVRFSGTTIQ SSLVNVSADAARDRVAPCPWHPFSTGEAFNYFWPPKIEK" mobile_element 24841683..24841762 /note="source:scaffold_2_CACTA_0244 9131 9214" /mobile_element_type="transposon:TIR/CACTA" gene 24843495..24845109 /locus_tag="TCM_029904" /note="dbxref CacaoGD:Thecc1EG029904" mRNA join(24843495..24844028,24844139..24844379, 24844487..24845109) /locus_tag="TCM_029904" /product="Aluminum induced protein with YGL and LRDR motifs" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031380t1" /inference="similar to AA sequence:ricco:29851.m002389" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00101t00001" CDS join(24843817..24844028,24844139..24844379, 24844487..24844801) /locus_tag="TCM_029904" /note="dbxref ricco:29851.m002389; paralog of Thecc1EG031380t1" /codon_start=1 /product="Aluminum induced protein with YGL and LRDR motifs" /protein_id="EOY28292.1" /db_xref="TAIR:AT4G27450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93V62" /translation="MLAIFNKGLVNPPKELHSPASVSSSRKPKLPVEILEDFLSANPN NAFSIGFGAAASLAYVPQQNSCTTYQRLFCGVDEIYCIFLGSLNNLCSLLRQYGLSKG TNEAMFIIEAYRTLRDRGPYPAHQVLKDLEGSYGFVVYDGKAGSVFAALGADEAVNLF WGIAADGSVVVSDNLKVIKESCAKSFAPFPAGCMFHSEQGLMSFEHPRSEMKAMPRID SEGVMCGADFKADVQSRISSMPRVGSEANWALRGSTA" gene complement(24845221..24850232) /locus_tag="TCM_029905" /note="dbxref CacaoGD:Thecc1EG029905" mRNA complement(join(24845221..24845740,24845853..24845951, 24846228..24846272,24846968..24847084,24847289..24847363, 24847578..24847773,24847921..24848066,24848610..24848624, 24848797..24848899,24849002..24849132,24849538..24849622, 24849717..24850232)) /locus_tag="TCM_029905" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04060.1" /inference="similar to AA sequence:Phytozome:GSVIVT01002030001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7524t1" CDS complement(join(24845720..24845740,24845853..24845951, 24846228..24846272,24846968..24847084,24847289..24847363, 24847578..24847773,24847921..24848066,24848610..24848624, 24848797..24848899,24849002..24849132,24849538..24849622, 24849717..24850006)) /locus_tag="TCM_029905" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28293.1" /db_xref="Phytozome:GSVIVT01002030001" /db_xref="TAIR:AT2G47960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82263" /translation="MSTTQQGTHSLAFRVMRLCKPSFHVEPPFRLDPADLFVGEDIFD DALAASNLPPLLSSYVSKSTDSSDLTYGNRFLLHHPSDAMGFSGLLVLPQAFGAIYLG ETFCSYISINNSSNFEVRDVIIKAEIQTERQRILLLDTSKSPVESIRAGGRYDFIVEH DVKELGAHTLVCTALYNDGDGERKYLPQFFKFIVANPLSVRTKVRVVKETTYLEACIE NHTKSNLYMDQVEFEPAPHWSATALKADELHPADNPPTGEIFKQPILIRSGGGVYNYL YQLKSSSDGSAQVKVEGTNILGKFQITWRTNLGEPGRLQTQQILGNPITCKEIELQIL EIPSLINLDRPFSVHLNLTNHTDRELGPFEVWLSQNSAHQEKIVMINGLQTMALPQVE ASGSTDFHLNLIATKVGVQKISGITVSDTRDKKTYDSLPDVEIFVESD" gene 24851801..24864041 /locus_tag="TCM_029906" /note="dbxref CacaoGD:Thecc1EG029906" mRNA join(24851801..24852349,24852451..24852519, 24852780..24852868,24853203..24853315,24853526..24853627, 24853989..24854079,24854387..24854983,24855448..24856066, 24856170..24856249,24856381..24856463,24857030..24857266, 24857620..24857791,24857960..24858468,24858706..24858882, 24859311..24859688,24860055..24860403,24860545..24861012, 24863954..24864041) /locus_tag="TCM_029906" /product="Sensitive to freezing 6" /inference="alignment:exonerate- protein:2:ricco:29851.m002387" /inference="similar to AA sequence:ricco:29851.m002387" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc234t35" CDS join(24852063..24852349,24852451..24852519, 24852780..24852868,24853203..24853315,24853526..24853627, 24853989..24854079,24854387..24854983,24855448..24856066, 24856170..24856249,24856381..24856463,24857030..24857266, 24857620..24857791,24857960..24858468,24858706..24858882, 24859311..24859688,24860055..24860201) /locus_tag="TCM_029906" /note="dbxref ricco:29851.m002387" /codon_start=1 /product="Sensitive to freezing 6" /protein_id="EOY28294.1" /db_xref="TAIR:AT4G04920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H2X8" /translation="MNQQQGSGNNKDPEEEPVTQSVVDSTVKTGPDRPVAPEPVAVTG EDEVVTSSEKTEDTPMEDDSVNPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCG KLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEW SPTSCPRALLIANFHGRITIWTQPSQGPAHLVRDASCWQREHEWRQDIAVVTKWLSGV SLYRWLSSKSSNPANSKSTFEEKFLSQQSQNSARWPNFLCVCSVFSSGSVQLHWSQWP PTQGSTARKWFCTSKGILGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTP GPGNGFQATAKTSTSSGIPPSVNPPNWAGFAPLAAYLFSWQEYLISEAKQGKKSTDQD FNDAASLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEG QYMSPYDPDEGPTITGWRVQRWESSLQPVVIHHIFGNPSSSFGGQAPMQTVWVSKVDT SIPPTNDFKIQQAAAAGPTPDVRKASDLSAEKAKRVSFDPFDLPSDVRTLARIVYSAH GGEIAISFLRGGVHIFSGPDFTAVDNYQINVGSAIAAPAFSSTSCCSASVWHDTSKDR TILKIIRVLPPAVSSSEIKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGI VSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLL LDMLGKGIESALVNPSALVSEPWHASGETLASIDLEAMAVDPALVPSIQAYVDAVLDL ASHFITRLRRYASFCRTLASHAVNAGSGSNRNMVASPTQSSATPATSQAGQSGTTSST GSTQMQAWVQGAIAKISSSTDGVANSTPTISGPSTFMPISINTGTFPGTPAVRLIGDC HFLHRLCQLLLFCFFFRRAQHPRCAQRTADANHQKSQPGAPGKMEEVNSVSVKPTTTM TRSDEAQGSRTGQVVPGAKGFEEGPAGRLKMGSGNAGQGYTFEEVKVLFLILMDLCRR TAALAHPLPVSQVGSSSIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGL LLRELELHPPSEEWHRRNMFGGPWSDPEDMGPIDDSPRLSNSIDSIDMSSLENFDGYY GAQTLWPRKRRLSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIR CLRQTSAFASPGSTSQRSQNERETWWISRWAHGCPMCGGTWVRVV" gene 24863483..24866676 /locus_tag="TCM_029907" /note="dbxref CacaoGD:Thecc1EG029907" mRNA join(24863483..24863863,24864195..24864337, 24864434..24864546,24865111..24865321,24865492..24865729, 24865859..24866009,24866084..24866676) /locus_tag="TCM_029907" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021713t2" /inference="similar to AA sequence:Phytozome:POPTR_0004s04030.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:PASA:2:TSA:puevd3b028923t1a3; alternateUTRof:Thecc1EG029907t1; inference alignment:Newbler:10:TSA:cgbaP2_g07550t00001" mRNA join(24863483..24863863,24863954..24864019, 24864195..24864337,24864434..24864546,24865111..24865321, 24865492..24865729,24865859..24866009,24866084..24866647) /locus_tag="TCM_029907" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021713t2" /inference="similar to AA sequence:Phytozome:POPTR_0004s04030.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:PASA:2:TSA:puevd3b028923t1a2; alternateUTRof:Thecc1EG029907t1; inference alignment:Newbler:10:TSA:cgbaP2_g07550t00001" mRNA join(24863483..24863863,24864191..24864337, 24864434..24864546,24865111..24865321,24865492..24865729, 24865859..24866009,24866084..24866634) /locus_tag="TCM_029907" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021713t2" /inference="similar to AA sequence:Phytozome:POPTR_0004s04030.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07550t00001" mRNA join(24864054..24864337,24864434..24864546, 24865111..24865321,24865492..24865729,24865859..24866009, 24866084..24866647) /locus_tag="TCM_029907" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s04030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021713t2" /inference="similar to AA sequence:Phytozome:POPTR_0004s04030.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:PASA:2:TSA:puevd3b028923t1a4; alternateUTRof:Thecc1EG029907t1; inference alignment:Newbler:10:TSA:cgbaP2_g07550t00001" CDS join(24864262..24864337,24864434..24864546, 24865111..24865321,24865492..24865729,24865859..24866009, 24866084..24866407) /locus_tag="TCM_029907" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021713t2" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY28295.1" /db_xref="Phytozome:POPTR_0004s04030.1" /db_xref="TAIR:AT3G09010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DEB2" /translation="MSCGCFRGSFVNRRRNTAQATGGIDEQLLGRVNHISYSQLRSAT DDFHSSNKIGRGGFGTVYKGVLKNGTEVAVKTLSAQSKQGVREFLTEINTISNVKHPN LVELIGCCVEGTNRILVYEYVENKSLDKILLDQRSTNIKLEWSKRSAICLGIARGLTF LHEELVPHIVHRDIKSSNILLDKDLNPKIGDFGLAKLFPDNITHISTRIAGTTGYLAP EYALGGQLTMKADVYSFGVLVLEIISGRSSSKANWGGMEKLLLEWAWQLYEGGKLVEL VDPELGEFPGEEVLRYMKVALFCTQAASSRRPLMSQVIEMLSRDIRINEKALTAPGFF QEGEASSSTKSIQSSAESTSYQMSSVPVTITQVTPR" CDS join(24864262..24864337,24864434..24864546, 24865111..24865321,24865492..24865729,24865859..24866009, 24866084..24866407) /locus_tag="TCM_029907" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021713t2" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY28296.1" /db_xref="Phytozome:POPTR_0004s04030.1" /db_xref="TAIR:AT3G09010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DEB2" /translation="MSCGCFRGSFVNRRRNTAQATGGIDEQLLGRVNHISYSQLRSAT DDFHSSNKIGRGGFGTVYKGVLKNGTEVAVKTLSAQSKQGVREFLTEINTISNVKHPN LVELIGCCVEGTNRILVYEYVENKSLDKILLDQRSTNIKLEWSKRSAICLGIARGLTF LHEELVPHIVHRDIKSSNILLDKDLNPKIGDFGLAKLFPDNITHISTRIAGTTGYLAP EYALGGQLTMKADVYSFGVLVLEIISGRSSSKANWGGMEKLLLEWAWQLYEGGKLVEL VDPELGEFPGEEVLRYMKVALFCTQAASSRRPLMSQVIEMLSRDIRINEKALTAPGFF QEGEASSSTKSIQSSAESTSYQMSSVPVTITQVTPR" CDS join(24864262..24864337,24864434..24864546, 24865111..24865321,24865492..24865729,24865859..24866009, 24866084..24866407) /locus_tag="TCM_029907" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021713t2" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY28297.1" /db_xref="Phytozome:POPTR_0004s04030.1" /db_xref="TAIR:AT3G09010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DEB2" /translation="MSCGCFRGSFVNRRRNTAQATGGIDEQLLGRVNHISYSQLRSAT DDFHSSNKIGRGGFGTVYKGVLKNGTEVAVKTLSAQSKQGVREFLTEINTISNVKHPN LVELIGCCVEGTNRILVYEYVENKSLDKILLDQRSTNIKLEWSKRSAICLGIARGLTF LHEELVPHIVHRDIKSSNILLDKDLNPKIGDFGLAKLFPDNITHISTRIAGTTGYLAP EYALGGQLTMKADVYSFGVLVLEIISGRSSSKANWGGMEKLLLEWAWQLYEGGKLVEL VDPELGEFPGEEVLRYMKVALFCTQAASSRRPLMSQVIEMLSRDIRINEKALTAPGFF QEGEASSSTKSIQSSAESTSYQMSSVPVTITQVTPR" CDS join(24864262..24864337,24864434..24864546, 24865111..24865321,24865492..24865729,24865859..24866009, 24866084..24866407) /locus_tag="TCM_029907" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG021713t2" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY28298.1" /db_xref="Phytozome:POPTR_0004s04030.1" /db_xref="TAIR:AT3G09010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DEB2" /translation="MSCGCFRGSFVNRRRNTAQATGGIDEQLLGRVNHISYSQLRSAT DDFHSSNKIGRGGFGTVYKGVLKNGTEVAVKTLSAQSKQGVREFLTEINTISNVKHPN LVELIGCCVEGTNRILVYEYVENKSLDKILLDQRSTNIKLEWSKRSAICLGIARGLTF LHEELVPHIVHRDIKSSNILLDKDLNPKIGDFGLAKLFPDNITHISTRIAGTTGYLAP EYALGGQLTMKADVYSFGVLVLEIISGRSSSKANWGGMEKLLLEWAWQLYEGGKLVEL VDPELGEFPGEEVLRYMKVALFCTQAASSRRPLMSQVIEMLSRDIRINEKALTAPGFF QEGEASSSTKSIQSSAESTSYQMSSVPVTITQVTPR" mobile_element 24865909..24865959 /note="source:CACAO_Mutator_E592_scaffold_3 2474 2524" /mobile_element_type="transposon:TIR/Mutator" gene complement(24866708..24870051) /locus_tag="TCM_029908" /note="dbxref CacaoGD:Thecc1EG029908" mRNA complement(join(24866708..24867071,24867574..24867958, 24868042..24868195,24869403..24870051)) /locus_tag="TCM_029908" /product="Clathrin light chain protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g07810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008075t1" /inference="similar to AA sequence:frave:gene30412" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03633t00001" CDS complement(join(24866959..24867071,24867574..24867958, 24868042..24868195,24869403..24869788)) /locus_tag="TCM_029908" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene30412; paralog of Thecc1EG008075t1" /codon_start=1 /product="Clathrin light chain protein isoform 1" /protein_id="EOY28299.1" /db_xref="TAIR:AT2G20760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3C8" /translation="MASFDAYGMEGEEIHASPNNHPFDVDDESYSNYGSYSNFTDNQQ FPADGGDVAVDHVTSSPEIFGFGSSDPTPAYSQSPFGTTIPVENGNGTNGFGDGNDDV FASDGPVLPPPGEMEPEEGFAFREWRRQNAILLEEKEKKEKELRNQIIEEAEEYKRAF YEKREKTIETNKTNNREREKLYMANQEKFHKTADKQYWTAIAELIPREVPNIEKKRGK KDQEKKPSITVIQGPKPGKPTDLSRMRHILVKLKHAPPPHMIPPPPAPAKDAKDGKDE KDTKNGKDAASNGTTSAEKGAPASSAKDATANAKATSQAISLAGMHNRQTSYNQNSME IIYFLSATPKP" mRNA complement(join(24867324..24867958,24868042..24868195, 24869403..24869920)) /locus_tag="TCM_029908" /product="Clathrin light chain protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g07810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008075t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04920.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08715t00001; inference alignment:Newbler:10:TSA:cgbaP1_g03633t00001" CDS complement(join(24867497..24867958,24868042..24868195, 24869403..24869788)) /locus_tag="TCM_029908" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG008075t1" /codon_start=1 /product="Clathrin light chain protein isoform 2" /protein_id="EOY28300.1" /db_xref="Phytozome:POPTR_0011s04920.1" /db_xref="TAIR:AT2G20760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3C8" /translation="MASFDAYGMEGEEIHASPNNHPFDVDDESYSNYGSYSNFTDNQQ FPADGGDVAVDHVTSSPEIFGFGSSDPTPAYSQSPFGTTIPVENGNGTNGFGDGNDDV FASDGPVLPPPGEMEPEEGFAFREWRRQNAILLEEKEKKEKELRNQIIEEAEEYKRAF YEKREKTIETNKTNNREREKLYMANQEKFHKTADKQYWTAIAELIPREVPNIEKKRGK KDQEKKPSITVIQGPKPGKPTDLSRMRHILVKLKHAPPPHMIPPPPAPAKDAKDGKDE KDTKNGKDAASNGTTSAEKGAPASSAKDATANGSSPEQDATAAKDQPAAEPEVTPAA" gene 24870013..24870977 /locus_tag="TCM_029909" /note="dbxref CacaoGD:Thecc1EG029909" mRNA 24870013..24870977 /locus_tag="TCM_029909" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc26t17_C1" gene complement(24870106..24878320) /locus_tag="TCM_029910" /note="dbxref CacaoGD:Thecc1EG029910" mRNA complement(join(24870106..24871180,24871276..24871349, 24871474..24871539,24871869..24871955,24872060..24872295, 24872861..24872957,24873154..24873207,24873347..24873477, 24873831..24873894,24874011..24874595,24874804..24874887, 24874997..24875102,24875248..24875318,24875447..24875604, 24875722..24875932,24876144..24876614,24877443..24878320)) /locus_tag="TCM_029910" /product="C-terminal domain phosphatase-like 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29851.m002384" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021715t1" /inference="similar to AA sequence:ricco:29851.m002384" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8026t1" CDS 24870586..24870885 /locus_tag="TCM_029909" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28301.1" /translation="MTTRSSACALCLAYQCQYSVTTASRKNQVPPRIWHMQQRVESYV TPPFLPPCGCGLLSIFEEKNHYITEFIICLNECPRGEDKMVNANPEHLLMLSGEF" mRNA complement(join(24871054..24871349,24871474..24871539, 24871869..24871955,24872060..24872295,24872861..24872957, 24873154..24873207,24873347..24873477,24873831..24873894, 24874011..24874595,24874804..24874887,24874997..24875102, 24875248..24875318,24875447..24875604,24875722..24875932, 24876144..24876614,24877443..24878277)) /locus_tag="TCM_029910" /product="C-terminal domain phosphatase-like 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29851.m002384" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021715t2" /inference="similar to AA sequence:Phytozome:POPTR_0004s04010.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc26t12; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8026t1" CDS complement(join(24871072..24871180,24871276..24871349, 24871474..24871539,24871869..24871955,24872060..24872295, 24872861..24872957,24873154..24873207,24873347..24873477, 24873831..24873894,24874011..24874595,24874804..24874887, 24874997..24875102,24875248..24875318,24875447..24875604, 24875722..24875932,24876144..24876614,24877443..24877775)) /locus_tag="TCM_029910" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29851.m002384; paralog of Thecc1EG021715t1" /codon_start=1 /product="C-terminal domain phosphatase-like 1 isoform 1" /protein_id="EOY28302.1" /db_xref="TAIR:AT4G21670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H271" /translation="MTSMYKSVVYRGEEVLGEVEIYPQQQLQQQQQLREEEDERKIMV MEEEMKEIRIEYLTQGSERCPPLAVLHTITSSGICFKMESSKDNNYSSSQDSPPLHLL HSECIRDNKTAVMPMGDCELHLVAMYSRNSDRPCFWGFNVSRGLYDSCLLMLNLRCLG IVFDLDETLIVANTMRSFEDRIEALQRKMTTEVDPQRVAGMVAEMKRYQDDKAILKQY AENDQVVENGKVIKIQSEVVPALSDNHQPIIRPLIRLQEKNIILTRINPQIRDTSVLV RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINSKELLDRIV CVKSGSRKSLFNVFQDGICHPKMALVIDDRLKVWDEKDQPRVHVVPAFAPYYAPQAEA NNTIPVLCVARNVACNVRGGFFREFDEGLLQRIPEISYEDDIKDIPSPPDVGNYLVSE DDTSALNGNKDPLLFDGMADAEVERRLKEAISATSTVSSAAINLDPRLTPSLQYTMPS SSSSIPPSASQPSIVSFSNMQFPLAAPVVKPVAPVAVPEPSLQSSPAREEGEVPESEL DPDTRRRLLILQHGQDTRDHTPPEPAFPPVRPTMQVSVPRGQSRGSWFAAEEEMSPRQ LNRAAPKEFPLDSERMHIEKHRHPPFFPKVESSIPSDRLLRENQRLSKEALHRDDRLG LNHTPSSYHSFSGEEMPLSQSSSSHRDLDFESGRTVTSGETSAGVLQDIAMKCGAKVE FRPALVASLDLQFSIEAWFAGEKVGEGVGRTRREAQRQAAEESIKNLANTYLSRIKPD SGSAEGDLSRLHNINDNGFPSNVNSFGNQLLAKEESLSFSTASEQSRLADPRLEGSKK SMGSVTALKELCMMEGLGVVFQPQPPSSSNALQKDEVYAQVEIDGQVLGKGTGLTWEE AKMQAAEKALGSLRSMLGQYSQKRQGSPRSLQGMQNKRLKPEFPRVLQRMPSSGRYPK NAPPVP" CDS complement(join(24871149..24871349,24871474..24871539, 24871869..24871955,24872060..24872295,24872861..24872957, 24873154..24873207,24873347..24873477,24873831..24873894, 24874011..24874595,24874804..24874887,24874997..24875102, 24875248..24875318,24875447..24875604,24875722..24875932, 24876144..24876614,24877443..24877775)) /locus_tag="TCM_029910" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021715t2" /codon_start=1 /product="C-terminal domain phosphatase-like 1 isoform 2" /protein_id="EOY28303.1" /db_xref="Phytozome:POPTR_0004s04010.1" /db_xref="TAIR:AT4G21670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H271" /translation="MTSMYKSVVYRGEEVLGEVEIYPQQQLQQQQQLREEEDERKIMV MEEEMKEIRIEYLTQGSERCPPLAVLHTITSSGICFKMESSKDNNYSSSQDSPPLHLL HSECIRDNKTAVMPMGDCELHLVAMYSRNSDRPCFWGFNVSRGLYDSCLLMLNLRCLG IVFDLDETLIVANTMRSFEDRIEALQRKMTTEVDPQRVAGMVAEMKRYQDDKAILKQY AENDQVVENGKVIKIQSEVVPALSDNHQPIIRPLIRLQEKNIILTRINPQIRDTSVLV RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINSKELLDRIV CVKSGSRKSLFNVFQDGICHPKMALVIDDRLKVWDEKDQPRVHVVPAFAPYYAPQAEA NNTIPVLCVARNVACNVRGGFFREFDEGLLQRIPEISYEDDIKDIPSPPDVGNYLVSE DDTSALNGNKDPLLFDGMADAEVERRLKEAISATSTVSSAAINLDPRLTPSLQYTMPS SSSSIPPSASQPSIVSFSNMQFPLAAPVVKPVAPVAVPEPSLQSSPAREEGEVPESEL DPDTRRRLLILQHGQDTRDHTPPEPAFPPVRPTMQVSVPRGQSRGSWFAAEEEMSPRQ LNRAAPKEFPLDSERMHIEKHRHPPFFPKVESSIPSDRLLRENQRLSKEALHRDDRLG LNHTPSSYHSFSGEEMPLSQSSSSHRDLDFESGRTVTSGETSAGVLQDIAMKCGAKVE FRPALVASLDLQFSIEAWFAGEKVGEGVGRTRREAQRQAAEESIKNLANTYLSRIKPD SGSAEGDLSRLHNINDNGFPSNVNSFGNQLLAKEESLSFSTASEQSRLADPRLEGSKK SMGSVTALKELCMMEGLGVVFQPQPPSSSNALQKDEVYAQVEIDGQVLGKGTGLTWEE AKMQAAEKALGSLRSMLGQYSQKRQGSPRCVILLVMLPGEKTSVAPFTPSYLLYYWLC GQGHCKVCKINA" mRNA complement(join(24871155..24871180,24871276..24871349, 24871474..24871539,24871869..24872295,24872861..24872957, 24873154..24873207,24873347..24873477,24873831..24873894, 24874011..24874595,24874804..24874887,24874997..24875102, 24875248..24875318,24875447..24875604,24875722..24875932, 24876144..24876614,24877443..24878277)) /locus_tag="TCM_029910" /product="C-terminal domain phosphatase-like 1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29851.m002384" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021715t2" /inference="similar to AA sequence:ricco:29851.m002384" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc26t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8026t1" CDS complement(join(24872048..24872295,24872861..24872957, 24873154..24873207,24873347..24873477,24873831..24873894, 24874011..24874595,24874804..24874887,24874997..24875102, 24875248..24875318,24875447..24875604,24875722..24875932, 24876144..24876614,24877443..24877775)) /locus_tag="TCM_029910" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29851.m002384; paralog of Thecc1EG021715t2" /codon_start=1 /product="C-terminal domain phosphatase-like 1 isoform 3" /protein_id="EOY28304.1" /db_xref="TAIR:AT4G21670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H271" /translation="MTSMYKSVVYRGEEVLGEVEIYPQQQLQQQQQLREEEDERKIMV MEEEMKEIRIEYLTQGSERCPPLAVLHTITSSGICFKMESSKDNNYSSSQDSPPLHLL HSECIRDNKTAVMPMGDCELHLVAMYSRNSDRPCFWGFNVSRGLYDSCLLMLNLRCLG IVFDLDETLIVANTMRSFEDRIEALQRKMTTEVDPQRVAGMVAEMKRYQDDKAILKQY AENDQVVENGKVIKIQSEVVPALSDNHQPIIRPLIRLQEKNIILTRINPQIRDTSVLV RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINSKELLDRIV CVKSGSRKSLFNVFQDGICHPKMALVIDDRLKVWDEKDQPRVHVVPAFAPYYAPQAEA NNTIPVLCVARNVACNVRGGFFREFDEGLLQRIPEISYEDDIKDIPSPPDVGNYLVSE DDTSALNGNKDPLLFDGMADAEVERRLKEAISATSTVSSAAINLDPRLTPSLQYTMPS SSSSIPPSASQPSIVSFSNMQFPLAAPVVKPVAPVAVPEPSLQSSPAREEGEVPESEL DPDTRRRLLILQHGQDTRDHTPPEPAFPPVRPTMQVSVPRGQSRGSWFAAEEEMSPRQ LNRAAPKEFPLDSERMHIEKHRHPPFFPKVESSIPSDRLLRENQRLSKEALHRDDRLG LNHTPSSYHSFSGEEMPLSQSSSSHRDLDFESGRTVTSGETSAGVLQDIAMKCGAKVE FRPALVASLDLQFSIEAWFAGEKVGEGVGRTRREAQRQAAEESIKNLANTYLSRIKPD SGSAEGDLSRLHNINDNGFPSNVNSFGNQLLAKEESLSFSTASEQSRLADPRLEGSKK SMGSVTALKELVRY" mobile_element 24879604..24880654 /note="source:CACAO_on_E172_scaffold_245 3 1082" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24880809..24880971) /note="source:CACAO_PIF_E465_scaffold_115 199 366" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 24881757..24889875 /locus_tag="TCM_029911" /note="dbxref CacaoGD:Thecc1EG029911" mRNA join(24881757..24882668,24884019..24884118, 24884732..24885071,24885227..24885339,24885521..24885646, 24885773..24885866,24885969..24886076,24886160..24886794, 24887062..24887327,24887447..24887591,24887790..24887887, 24887963..24888044,24888349..24889066) /locus_tag="TCM_029911" /product="WAPL protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29851.m002383" /inference="similar to AA sequence:ricco:29851.m002383" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7439t3" mRNA join(24881865..24882668,24884019..24884118, 24884732..24885071,24885227..24885339,24885521..24885646, 24885773..24885866,24885969..24886076,24886160..24886794, 24887062..24887327,24887447..24887591,24887790..24888044, 24888349..24889401,24889510..24889745,24889843..24889875) /locus_tag="TCM_029911" /product="WAPL protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29851.m002383" /inference="similar to AA sequence:ricco:29851.m002383" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc261t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7439t3" mRNA join(24881865..24882668,24884019..24884118, 24884732..24885071,24885227..24885339,24885521..24885646, 24885773..24885866,24885969..24886076,24886160..24886794, 24887062..24887327,24887447..24887591,24887790..24887887, 24887963..24888044,24888349..24889401,24889510..24889745, 24889843..24889875) /locus_tag="TCM_029911" /product="WAPL protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29851.m002383" /inference="similar to AA sequence:ricco:29851.m002383" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc261t10; alternateUTRof:Thecc1EG029911t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7439t3" mRNA join(24881865..24882668,24884019..24884118, 24884732..24885071,24885227..24885339,24885521..24885646, 24885773..24885866,24885969..24886076,24886160..24886794, 24887062..24887341,24887447..24887591,24887790..24887887, 24887963..24888377) /locus_tag="TCM_029911" /product="WAPL protein, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:29851.m002383" /inference="similar to AA sequence:ricco:29851.m002383" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc316t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7439t3" mRNA join(24881865..24882668,24884019..24884118, 24884732..24885071,24885227..24885339,24885521..24885646, 24885773..24885866,24885969..24886076,24886160..24886794, 24887062..24887327,24887447..24887591,24887790..24887891, 24888349..>24888377) /locus_tag="TCM_029911" /product="WAPL protein, putative isoform 6" /inference="alignment:exonerate- protein:2:ricco:29851.m002383" /inference="similar to AA sequence:Phytozome:POPTR_0004s04000.1" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc323t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7439t3" mRNA join(24881865..24882668,24884019..24884118, 24884732..24885071,24885227..24885339,24885521..24885646, 24885773..24885866,24885969..24886076,24886160..24886794, 24887062..24887327,24887447..24887591,24887790..24887887, 24887967..>24887993) /locus_tag="TCM_029911" /product="WAPL protein, putative isoform 5" /inference="alignment:exonerate- protein:2:ricco:29851.m002383" /inference="similar to AA sequence:Phytozome:POPTR_0004s04000.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc323t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7439t3" CDS join(24882148..24882668,24884019..24884118, 24884732..24885071,24885227..24885339,24885521..24885646, 24885773..24885866,24885969..24886076,24886160..24886794, 24887062..24887327,24887447..24887591,24887790..24888044, 24888349..24888432) /locus_tag="TCM_029911" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29851.m002383" /codon_start=1 /product="WAPL protein, putative isoform 3" /protein_id="EOY28307.1" /db_xref="TAIR:AT1G11060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RZ62" /translation="MIVRTYGRRNRGLTRTFSDSLDDDVSDSPPLSQETAPSQDIYSF PFTSQESSSFWPSSQEFNDDVYKNQVTTHRTTSNFDFDDSRNGVVRRSKKQKKNQSKT EVGYSSMPWISSTSTLMEAQEFGEMMEHVDEVNFALDGLKKGQPVRIRRASFLSLLSI CGTAQQRRLLRTHGMAKTIIDAILGLNFDDTPSNLAAVALFYVLTSDGQDEHLLESPS CIRFLIKLLKPVIPTAKENKTGKVGSKLLALRKGADMSRDTTKMLDSSSAAIISKVEE ILVSCKEMKSRHGDDSGLRRPELIPKWIALLTLEKACLSKISLEDTTGTVRKTGGNFK EKLRELGGLDAVFEVAMECHSVMEVRVKQSLPSPHIEDKKDVQSLVLLSKCLKIMENA AFLSSDNQSHLLEMKGQLNSDGCRLSFTRLVISVIKILSGLYLKSSSASSSTERAFSN SKARVDTDELALAADCKVGRHDVISVNSSEKFSSLEWSFSEKSFNISQSDPGPSTHCL GRSVSSFRSTPTSTNDSYLLKMRIHSSLSSSSSGKLGSSDDGIPVTSNGSGTLCERPD DTKAGKWQLLEDSQDPYAFGEDDFVPSKWDLLSRKQKIPRTKKHEKLGLRNGEIQDEH QFQFTISQQESSNGEICQTEFTNEEYRHSNATSGSQSAEEEYSSLLSDCLLAAVKVLM NLTNDNPLGCQQIAASGALETLSTLIASHFPSFCSYLPRVSEMEENSLSLELHDRNDR PLTDPELDFLVAILGLLVNLVEKDEHNRSRLAAASVFVPNSEGLAEKSQMAVIPLLCA IFLANQGEDDAAGEVLPWNDEAAVLQEEKEAEKMILEAYAALLLAFLSTERLVCFISF PVLSFHVYILKYFAPFDSKSTRNAIADCLPNHSLAILVPVLERFVAFHFTLNMISPET HKAVVEVIESCRIP" CDS join(24882148..24882668,24884019..24884118, 24884732..24885071,24885227..24885339,24885521..24885646, 24885773..24885866,24885969..24886076,24886160..24886794, 24887062..24887327,24887447..24887591,24887790..24887887, 24887963..24888044,24888349..24888432) /locus_tag="TCM_029911" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29851.m002383" /codon_start=1 /product="WAPL protein, putative isoform 1" /protein_id="EOY28305.1" /db_xref="TAIR:AT1G11060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RZ62" /translation="MIVRTYGRRNRGLTRTFSDSLDDDVSDSPPLSQETAPSQDIYSF PFTSQESSSFWPSSQEFNDDVYKNQVTTHRTTSNFDFDDSRNGVVRRSKKQKKNQSKT EVGYSSMPWISSTSTLMEAQEFGEMMEHVDEVNFALDGLKKGQPVRIRRASFLSLLSI CGTAQQRRLLRTHGMAKTIIDAILGLNFDDTPSNLAAVALFYVLTSDGQDEHLLESPS CIRFLIKLLKPVIPTAKENKTGKVGSKLLALRKGADMSRDTTKMLDSSSAAIISKVEE ILVSCKEMKSRHGDDSGLRRPELIPKWIALLTLEKACLSKISLEDTTGTVRKTGGNFK EKLRELGGLDAVFEVAMECHSVMEVRVKQSLPSPHIEDKKDVQSLVLLSKCLKIMENA AFLSSDNQSHLLEMKGQLNSDGCRLSFTRLVISVIKILSGLYLKSSSASSSTERAFSN SKARVDTDELALAADCKVGRHDVISVNSSEKFSSLEWSFSEKSFNISQSDPGPSTHCL GRSVSSFRSTPTSTNDSYLLKMRIHSSLSSSSSGKLGSSDDGIPVTSNGSGTLCERPD DTKAGKWQLLEDSQDPYAFGEDDFVPSKWDLLSRKQKIPRTKKHEKLGLRNGEIQDEH QFQFTISQQESSNGEICQTEFTNEEYRHSNATSGSQSAEEEYSSLLSDCLLAAVKVLM NLTNDNPLGCQQIAASGALETLSTLIASHFPSFCSYLPRVSEMEENSLSLELHDRNDR PLTDPELDFLVAILGLLVNLVEKDEHNRSRLAAASVFVPNSEGLAEKSQMAVIPLLCA IFLANQGEDDAAGEVLPWNDEAAVLQEEKEAEKMILEAYAALLLAFLSTESKSTRNAI ADCLPNHSLAILVPVLERFVAFHFTLNMISPETHKAVVEVIESCRIP" CDS join(24882148..24882668,24884019..24884118, 24884732..24885071,24885227..24885339,24885521..24885646, 24885773..24885866,24885969..24886076,24886160..24886794, 24887062..24887327,24887447..24887591,24887790..24887887, 24887963..24888044,24888349..24888432) /locus_tag="TCM_029911" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29851.m002383" /codon_start=1 /product="WAPL protein, putative isoform 1" /protein_id="EOY28306.1" /db_xref="TAIR:AT1G11060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RZ62" /translation="MIVRTYGRRNRGLTRTFSDSLDDDVSDSPPLSQETAPSQDIYSF PFTSQESSSFWPSSQEFNDDVYKNQVTTHRTTSNFDFDDSRNGVVRRSKKQKKNQSKT EVGYSSMPWISSTSTLMEAQEFGEMMEHVDEVNFALDGLKKGQPVRIRRASFLSLLSI CGTAQQRRLLRTHGMAKTIIDAILGLNFDDTPSNLAAVALFYVLTSDGQDEHLLESPS CIRFLIKLLKPVIPTAKENKTGKVGSKLLALRKGADMSRDTTKMLDSSSAAIISKVEE ILVSCKEMKSRHGDDSGLRRPELIPKWIALLTLEKACLSKISLEDTTGTVRKTGGNFK EKLRELGGLDAVFEVAMECHSVMEVRVKQSLPSPHIEDKKDVQSLVLLSKCLKIMENA AFLSSDNQSHLLEMKGQLNSDGCRLSFTRLVISVIKILSGLYLKSSSASSSTERAFSN SKARVDTDELALAADCKVGRHDVISVNSSEKFSSLEWSFSEKSFNISQSDPGPSTHCL GRSVSSFRSTPTSTNDSYLLKMRIHSSLSSSSSGKLGSSDDGIPVTSNGSGTLCERPD DTKAGKWQLLEDSQDPYAFGEDDFVPSKWDLLSRKQKIPRTKKHEKLGLRNGEIQDEH QFQFTISQQESSNGEICQTEFTNEEYRHSNATSGSQSAEEEYSSLLSDCLLAAVKVLM NLTNDNPLGCQQIAASGALETLSTLIASHFPSFCSYLPRVSEMEENSLSLELHDRNDR PLTDPELDFLVAILGLLVNLVEKDEHNRSRLAAASVFVPNSEGLAEKSQMAVIPLLCA IFLANQGEDDAAGEVLPWNDEAAVLQEEKEAEKMILEAYAALLLAFLSTESKSTRNAI ADCLPNHSLAILVPVLERFVAFHFTLNMISPETHKAVVEVIESCRIP" CDS join(24882148..24882668,24884019..24884118, 24884732..24885071,24885227..24885339,24885521..24885646, 24885773..24885866,24885969..24886076,24886160..24886794, 24887062..24887327,24887447..24887591,24887790..24887891, 24888349..>24888375) /locus_tag="TCM_029911" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="WAPL protein, putative isoform 6" /protein_id="EOY28310.1" /db_xref="Phytozome:POPTR_0004s04000.1" /db_xref="TAIR:AT1G11060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RZ62" /translation="MIVRTYGRRNRGLTRTFSDSLDDDVSDSPPLSQETAPSQDIYSF PFTSQESSSFWPSSQEFNDDVYKNQVTTHRTTSNFDFDDSRNGVVRRSKKQKKNQSKT EVGYSSMPWISSTSTLMEAQEFGEMMEHVDEVNFALDGLKKGQPVRIRRASFLSLLSI CGTAQQRRLLRTHGMAKTIIDAILGLNFDDTPSNLAAVALFYVLTSDGQDEHLLESPS CIRFLIKLLKPVIPTAKENKTGKVGSKLLALRKGADMSRDTTKMLDSSSAAIISKVEE ILVSCKEMKSRHGDDSGLRRPELIPKWIALLTLEKACLSKISLEDTTGTVRKTGGNFK EKLRELGGLDAVFEVAMECHSVMEVRVKQSLPSPHIEDKKDVQSLVLLSKCLKIMENA AFLSSDNQSHLLEMKGQLNSDGCRLSFTRLVISVIKILSGLYLKSSSASSSTERAFSN SKARVDTDELALAADCKVGRHDVISVNSSEKFSSLEWSFSEKSFNISQSDPGPSTHCL GRSVSSFRSTPTSTNDSYLLKMRIHSSLSSSSSGKLGSSDDGIPVTSNGSGTLCERPD DTKAGKWQLLEDSQDPYAFGEDDFVPSKWDLLSRKQKIPRTKKHEKLGLRNGEIQDEH QFQFTISQQESSNGEICQTEFTNEEYRHSNATSGSQSAEEEYSSLLSDCLLAAVKVLM NLTNDNPLGCQQIAASGALETLSTLIASHFPSFCSYLPRVSEMEENSLSLELHDRNDR PLTDPELDFLVAILGLLVNLVEKDEHNRSRLAAASVFVPNSEGLAEKSQMAVIPLLCA IFLANQGEDDAAGEVLPWNDEAAVLQEEKEAEKMILEAYAALLLAFLSTERLAFHFTL NMI" CDS join(24882148..24882668,24884019..24884118, 24884732..24885071,24885227..24885339,24885521..24885646, 24885773..24885866,24885969..24886076,24886160..24886794, 24887062..24887327,24887447..24887591,24887790..24887887, 24887967..>24887991) /locus_tag="TCM_029911" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="WAPL protein, putative isoform 5" /protein_id="EOY28309.1" /db_xref="Phytozome:POPTR_0004s04000.1" /db_xref="TAIR:AT1G11060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RZ62" /translation="MIVRTYGRRNRGLTRTFSDSLDDDVSDSPPLSQETAPSQDIYSF PFTSQESSSFWPSSQEFNDDVYKNQVTTHRTTSNFDFDDSRNGVVRRSKKQKKNQSKT EVGYSSMPWISSTSTLMEAQEFGEMMEHVDEVNFALDGLKKGQPVRIRRASFLSLLSI CGTAQQRRLLRTHGMAKTIIDAILGLNFDDTPSNLAAVALFYVLTSDGQDEHLLESPS CIRFLIKLLKPVIPTAKENKTGKVGSKLLALRKGADMSRDTTKMLDSSSAAIISKVEE ILVSCKEMKSRHGDDSGLRRPELIPKWIALLTLEKACLSKISLEDTTGTVRKTGGNFK EKLRELGGLDAVFEVAMECHSVMEVRVKQSLPSPHIEDKKDVQSLVLLSKCLKIMENA AFLSSDNQSHLLEMKGQLNSDGCRLSFTRLVISVIKILSGLYLKSSSASSSTERAFSN SKARVDTDELALAADCKVGRHDVISVNSSEKFSSLEWSFSEKSFNISQSDPGPSTHCL GRSVSSFRSTPTSTNDSYLLKMRIHSSLSSSSSGKLGSSDDGIPVTSNGSGTLCERPD DTKAGKWQLLEDSQDPYAFGEDDFVPSKWDLLSRKQKIPRTKKHEKLGLRNGEIQDEH QFQFTISQQESSNGEICQTEFTNEEYRHSNATSGSQSAEEEYSSLLSDCLLAAVKVLM NLTNDNPLGCQQIAASGALETLSTLIASHFPSFCSYLPRVSEMEENSLSLELHDRNDR PLTDPELDFLVAILGLLVNLVEKDEHNRSRLAAASVFVPNSEGLAEKSQMAVIPLLCA IFLANQGEDDAAGEVLPWNDEAAVLQEEKEAEKMILEAYAALLLAFLSTERAHEMQLL I" CDS join(24882148..24882668,24884019..24884118, 24884732..24885071,24885227..24885339,24885521..24885646, 24885773..24885866,24885969..24886076,24886160..24886794, 24887062..24887341,24887447..24887496) /locus_tag="TCM_029911" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29851.m002383" /codon_start=1 /product="WAPL protein, putative isoform 4" /protein_id="EOY28308.1" /db_xref="TAIR:AT1G11060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RZ62" /translation="MIVRTYGRRNRGLTRTFSDSLDDDVSDSPPLSQETAPSQDIYSF PFTSQESSSFWPSSQEFNDDVYKNQVTTHRTTSNFDFDDSRNGVVRRSKKQKKNQSKT EVGYSSMPWISSTSTLMEAQEFGEMMEHVDEVNFALDGLKKGQPVRIRRASFLSLLSI CGTAQQRRLLRTHGMAKTIIDAILGLNFDDTPSNLAAVALFYVLTSDGQDEHLLESPS CIRFLIKLLKPVIPTAKENKTGKVGSKLLALRKGADMSRDTTKMLDSSSAAIISKVEE ILVSCKEMKSRHGDDSGLRRPELIPKWIALLTLEKACLSKISLEDTTGTVRKTGGNFK EKLRELGGLDAVFEVAMECHSVMEVRVKQSLPSPHIEDKKDVQSLVLLSKCLKIMENA AFLSSDNQSHLLEMKGQLNSDGCRLSFTRLVISVIKILSGLYLKSSSASSSTERAFSN SKARVDTDELALAADCKVGRHDVISVNSSEKFSSLEWSFSEKSFNISQSDPGPSTHCL GRSVSSFRSTPTSTNDSYLLKMRIHSSLSSSSSGKLGSSDDGIPVTSNGSGTLCERPD DTKAGKWQLLEDSQDPYAFGEDDFVPSKWDLLSRKQKIPRTKKHEKLGLRNGEIQDEH QFQFTISQQESSNGEICQTEFTNEEYRHSNATSGSQSAEEEYSSLLSDCLLAAVKVLM NLTNDNPLGCQQIAASGALETLSTLIASHFPSFCSYLPRVSEMEENSLSLELHDRNDR PLTDPELDFLVAILGLLVNLVEKDEHNRLIYLYHGLQRLLFSYQIQKG" gene complement(24888836..24890620) /locus_tag="TCM_029912" /note="dbxref CacaoGD:Thecc1EG029912" mRNA complement(join(24888836..24889402,24889511..24889746, 24889844..24890008,24890139..24890353,24890438..24890620)) /locus_tag="TCM_029912" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29851.m002382.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029913t1" /inference="similar to AA sequence:ricco:29851.m002382" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11754t00001" CDS complement(join(24889147..24889402,24889511..24889746, 24889844..24890008,24890139..24890353,24890438..24890507)) /locus_tag="TCM_029912" /note="dbxref ricco:29851.m002382; paralog of Thecc1EG029913t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY28311.1" /db_xref="TAIR:AT3G51000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TYW5" /translation="MDQIQHKHIDVRGVNLHVAEIGTGSSVVVFLHGFPEIWYSWRHQ MIAIAGAGYRAIAPDLRGYGLSGNHPEPEKASFNDFVDDTIAILDSFHIDKAFLIGKD FGSWPVYLLSLFHPTRVIGVVSLGVPFFVPRPQKFRDLPEGFYISRWKEPGRAEADFS RFDVKTVWRNIYILFSRSEIPIAEKGKEIMDLVDPSNPFPPWLTNEDLTTYAKAYEKS GFSSPMQVPYTRLPEEFTIENPKVEVPVLLIVGGKDYFLKFPGIEDYITSEKVRDYVA ELEIEFLPEGTHFMQEQFPDKVNQLIVNFLDKACSIK" gene complement(24890993..24893250) /locus_tag="TCM_029913" /note="dbxref CacaoGD:Thecc1EG029913" mRNA complement(join(24890993..24891664,24891959..24892194, 24892290..24892457,24892744..24892958,24893079..24893250)) /locus_tag="TCM_029913" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04780.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029912t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04780.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03817t00001" CDS complement(join(24891418..24891664,24891959..24892194, 24892290..24892457,24892744..24892958,24893079..24893148)) /locus_tag="TCM_029913" /note="paralog of Thecc1EG029912t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY28312.1" /db_xref="Phytozome:POPTR_0011s04780.1" /db_xref="TAIR:AT4G02340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TYW5" /translation="MEQIQHNFVTVRGLKFHVAEIGTGSNVVVFLHGFPEIWYTWRHQ MVAVADAGFRAIAPDYRGYGLSDIPPEPERTSFADIVSDLVAILDHLGVNKVFLVGKD FGVWPAYHVALLHPDRVSAVITLGVPYLPPEPPKFHQSLPEGFYISRWREPGRAEADF GRFDAKTVVRNIYILFSRSEIPIAAENQEIMDLVDASTPLPPWFTEEDLAAYGALYEK SGFRTALQVPYRSFEEDFGITDPIVKVPALLIMGCKDYVFKFPGIEEYIKFGKAQELV PGLDIIYLPEGTHFVQEQSPELVNELILDFLKSHI" gene 24893693..24897244 /locus_tag="TCM_029914" /note="dbxref CacaoGD:Thecc1EG029914" mRNA join(24893693..24894068,24894688..24897244) /locus_tag="TCM_029914" /product="PAF1 complex component isoform 1" /inference="alignment:exonerate- protein:2:ricco:29851.m002380" /inference="similar to AA sequence:ricco:29851.m002380" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04614t00001" mRNA join(24894043..24894178,24894688..24897237) /locus_tag="TCM_029914" /product="PAF1 complex component isoform 1" /inference="alignment:exonerate- protein:2:ricco:29851.m002380" /inference="similar to AA sequence:ricco:29851.m002380" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc744t1; alternateUTRof:Thecc1EG029914t1; inference alignment:Newbler:10:TSA:cgbaB_g04614t00001" CDS 24894737..24896719 /locus_tag="TCM_029914" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29851.m002380" /codon_start=1 /product="PAF1 complex component isoform 1" /protein_id="EOY28313.1" /db_xref="TAIR:AT1G61040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYK9" /translation="MADLENLLLEAAGRTGTGGRNRHSLPPSRRRREGSYSDGGSDSR DDDSDDDHGYASRKPSGSQVPLKKRLDPAERDDDQGSQEEGDYDDGVSVHEGDSSDES DVGDDLYKNEDDRRKLAQMTELERELILSERADKRGDKKFTEKIRSKRENDRPSRSRK ETPPLPSSRGVRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSR GLSPVKRKPFTASSLSSSSQSDSESRSNSEDEGSTGDGGMVDSDDDRGMQGPDGPTFD DIKEITIRRSKLAKWFMEPFFEELIVGCYVRVGIGRSKSGPIYRLCMVRNVDATEPER TYKLENKTTYKYLNVVWGNESSAARWQMAMISDSPPQEEEFRQLIRELERSGGRMPSK QDVLEKKEALQKAKTFVYSAATVKQMLQEKKSTSSRPLNIAAEKDRLRRDLEIAQSKH DEAEVERIKMRLQQLEASRQAQEKDAKAVRLAEMNRKNRAENFKNASELKPVNTGLKA GEAGYDPFSRRWTRSRNYYVAKPPGADAAAVANGDRIGVIASGNGNDARAAAEAGRAA TVAALQEAAGAGKLVDTSAPVDEGTESNMLHDFEIPISLNALQRFGGPQGAVAGFMAR KQRIEATVGCQVPENDGRRHALTLTVSDYKRRRGLL" CDS 24894737..24896719 /locus_tag="TCM_029914" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29851.m002380" /codon_start=1 /product="PAF1 complex component isoform 1" /protein_id="EOY28314.1" /db_xref="TAIR:AT1G61040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYK9" /translation="MADLENLLLEAAGRTGTGGRNRHSLPPSRRRREGSYSDGGSDSR DDDSDDDHGYASRKPSGSQVPLKKRLDPAERDDDQGSQEEGDYDDGVSVHEGDSSDES DVGDDLYKNEDDRRKLAQMTELERELILSERADKRGDKKFTEKIRSKRENDRPSRSRK ETPPLPSSRGVRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSR GLSPVKRKPFTASSLSSSSQSDSESRSNSEDEGSTGDGGMVDSDDDRGMQGPDGPTFD DIKEITIRRSKLAKWFMEPFFEELIVGCYVRVGIGRSKSGPIYRLCMVRNVDATEPER TYKLENKTTYKYLNVVWGNESSAARWQMAMISDSPPQEEEFRQLIRELERSGGRMPSK QDVLEKKEALQKAKTFVYSAATVKQMLQEKKSTSSRPLNIAAEKDRLRRDLEIAQSKH DEAEVERIKMRLQQLEASRQAQEKDAKAVRLAEMNRKNRAENFKNASELKPVNTGLKA GEAGYDPFSRRWTRSRNYYVAKPPGADAAAVANGDRIGVIASGNGNDARAAAEAGRAA TVAALQEAAGAGKLVDTSAPVDEGTESNMLHDFEIPISLNALQRFGGPQGAVAGFMAR KQRIEATVGCQVPENDGRRHALTLTVSDYKRRRGLL" gene 24898616..24900662 /locus_tag="TCM_029915" /note="dbxref CacaoGD:Thecc1EG029915" mRNA 24898616..24900662 /locus_tag="TCM_029915" /product="Alpha 1,4-glycosyltransferase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021723t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04750.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc231t1" CDS 24898977..24900293 /locus_tag="TCM_029915" /note="paralog of Thecc1EG021723t1" /codon_start=1 /product="Alpha 1,4-glycosyltransferase family protein, putative" /protein_id="EOY28315.1" /db_xref="Phytozome:POPTR_0011s04750.1" /db_xref="TAIR:AT1G61050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U6X4" /translation="MFEMTRLHHRFQRIKSSVYGFVFLLPTSIVALFLFILLACNGFS VFYINLPVPAKSSPEPANVLPENLPGDKKVTKLASSVMYAVKEENPPVISKTHLPLLQ KPNFSVVPVDKPLVFRPKQARLSRQILRILRSGTKAKGFSAQVKDFFQNSKCKSRFFM TWISSVESFGDRELLAVESVFRSHPEACLLIVSNSLDSKRGKVVLKPFLDRGFKLVAF DPDFDYIFKNTYAELWFNRLKRGNLNPGEVSLGQNISNLLRLALLYKYGGIYIDTDII VLKRFNNLRNVIGAQSINLETKNWTRLNNAVLIFDKHHPLLYKFIQEFALTFDGNKWG HNGPYLVSRVVARVTGRPGFNFTVLPPSAFYPVDWSRIRSLFQGPRTKVHSNWLHNKL EQIRRQSFAVHLWNRQSRNVRVQEGSIIHHIVSDCCVFCDSSRSSL" gene complement(24901925..24905092) /locus_tag="TCM_029916" /note="dbxref CacaoGD:Thecc1EG029916" mRNA complement(join(24901925..24904193,24904819..24905092)) /locus_tag="TCM_029916" /product="Major facilitator superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008069t1" /inference="similar to AA sequence:frave:gene30425" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7423t1" CDS complement(join(24902830..24904193,24904819..24905026)) /locus_tag="TCM_029916" /note="dbxref frave:gene30425; paralog of Thecc1EG008069t1" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY28316.1" /db_xref="TAIR:AT2G20780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WUU6" /translation="MGVQENGNNMKYERMGSDAAEDEIVLTNILRHKKTAEEGVIVNN INSNTRKYVFACAILASLNSVLLGYDVGVMSGAIIFIQEDLKISEVQEEVLVGILSIV SLLGSLAGGRTSDAIGRKWTIALAAVVFQSGAAIMSLAPSFQILMIGRLLAGIGIGFG VMIAPVYIAEISPSITRGSLTSFPEIFVNLGILLGYISNYAFSGFPVHVNWRIMLGVG ILPSVFIGFALFIIPESPRWLVMQNRVQEARSVLSKTYDSEREVEDRLAEIQAAAGIA NAEKYEAKAVWHEILNPTPAVRRMLITGCGIQCFQQVTGIDATVYYSPTIFKDAGIKG NTELLAATVAVGFTKTMFILIAIFLIDKLGRKPLLFISTIGMTFCLFCLSFTLTFLGD GQGGIVLAILLVCANVAFFSVGMGPVCWVLSSEIFPLRLRAQASGLGAVASRVSSGLV CMSFLSVSRAITVGGTFFVFFMASVLSVAFVHKCVPETKGKSLEQIEMLFQNEGEWRR GEVEMRDAERLVHKQ" mobile_element 24905579..24905757 /note="source:scaffold_9_CACTA_0946 17778 17962" /mobile_element_type="transposon:TIR/CACTA" gene 24906437..24913151 /locus_tag="TCM_029917" /note="dbxref CacaoGD:Thecc1EG029917" mRNA join(24906437..24906949,24907282..24907401, 24907492..24907617,24907718..24907780,24908138..24908259, 24908395..24908428,24908758..24908835,24908985..24909077, 24909182..24909268,24909911..24910012,24910101..24910220, 24910348..24910410,24910893..24911026,24911209..24911290, 24911400..24911458,24911547..24911592,24911736..24911827, 24911916..24911985,24912635..24913151) /locus_tag="TCM_029917" /product="Proline-rich spliceosome-associated family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03920.1" /inference="similar to AA sequence:ricco:29851.m002377" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g05975t00001" mRNA join(24906652..24906949,24907282..24907401, 24907492..24907617,24907718..24907780,24908138..24908245, 24908758..24908835,24908985..24909077,24909182..24909268, 24909911..24910012,24910101..24910220,24910348..24910410, 24910893..24911026,24911209..24911290,24911400..24911458, 24911547..24911592,24911736..24911827,24911916..24911985, 24912635..24913136) /locus_tag="TCM_029917" /product="Proline-rich spliceosome-associated family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03920.1" /inference="similar to AA sequence:ricco:29851.m002377" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7475t4; inference alignment:Newbler:10:TSA:cgbaL_g05975t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc183t12" CDS join(24906692..24906949,24907282..24907401, 24907492..24907617,24907718..24907780,24908138..24908259, 24908395..24908428,24908758..24908835,24908985..24909077, 24909182..24909268,24909911..24910012,24910101..24910220, 24910348..24910410,24910893..24911026,24911209..24911290, 24911400..24911458,24911547..24911592,24911736..24911827, 24911916..24911985,24912635..24912706) /locus_tag="TCM_029917" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29851.m002377" /codon_start=1 /product="Proline-rich spliceosome-associated family protein isoform 1" /protein_id="EOY28317.1" /db_xref="TAIR:AT4G21660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6K7Q7" /translation="MTAEVLSHQNGAVVSNGDLNKKTSNANPSVASKKSRESERRRRR RKQKKNKKTSHLQNDAANGAVSDAGDSDAGEDETKENSDPQQITEQVVVEYVPEKAEL DDGIDEEFRKVFEKFSFWEAAGSEETDKKDESAEDADAKKKDDSDSDEEEQDNQQKEK GVSNKKKKLQRRMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWC QKRKYLQVSDSWGAAVTTLEPGLGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSK KLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTTHGDLYHEGKEFEVKLREMK PGSLSHELKEALGMPEGAPPPWLINMQRYGPPPSYPQLKIPGLNAPIPLGAIFGYHPG GWGKPPVDEYGRPLYGDVFGVQQQEQPNYEEEPVDKSKHWGDLEEEEEEEEEEEEEEI EEEELEDGIQSVDSLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEERIAPGTL LGTTHTYVVNTGTQDKSAAKRVDLLKGQKSDRVEVSLQPEELELMDNVLPAKYEEARE EEKLRSQREDFSDMVAENEKKRKRKMQEKEGKSKKKDFKF" CDS join(24906692..24906949,24907282..24907401, 24907492..24907617,24907718..24907780,24908138..24908245, 24908758..24908835,24908985..24909077,24909182..24909268, 24909911..24910012,24910101..24910220,24910348..24910410, 24910893..24911026,24911209..24911290,24911400..24911458, 24911547..24911592,24911736..24911827,24911916..24911985, 24912635..24912706) /locus_tag="TCM_029917" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29851.m002377" /codon_start=1 /product="Proline-rich spliceosome-associated family protein isoform 2" /protein_id="EOY28318.1" /db_xref="TAIR:AT4G21660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6K7Q7" /translation="MTAEVLSHQNGAVVSNGDLNKKTSNANPSVASKKSRESERRRRR RKQKKNKKTSHLQNDAANGAVSDAGDSDAGEDETKENSDPQQITEQVVVEYVPEKAEL DDGIDEEFRKVFEKFSFWEAAGSEETDKKDESAEDADAKKKDDSDSDEEEQDNQQKEK GVSNKKKKLQRRMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWC QKRKYLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGK MDIDYQVLHDAFFKYQTKPKLTTHGDLYHEGKEFEVKLREMKPGSLSHELKEALGMPE GAPPPWLINMQRYGPPPSYPQLKIPGLNAPIPLGAIFGYHPGGWGKPPVDEYGRPLYG DVFGVQQQEQPNYEEEPVDKSKHWGDLEEEEEEEEEEEEEEIEEEELEDGIQSVDSLS STPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEERIAPGTLLGTTHTYVVNTGTQDK SAAKRVDLLKGQKSDRVEVSLQPEELELMDNVLPAKYEEAREEEKLRSQREDFSDMVA ENEKKRKRKMQEKEGKSKKKDFKF" gene 24919233..24921467 /locus_tag="TCM_029918" /note="dbxref CacaoGD:Thecc1EG029918" mRNA join(24919233..24919539,24919630..24921467) /locus_tag="TCM_029918" /product="Dof-type zinc finger DNA-binding family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb07g028850.1.3" /inference="similar to AA sequence:Phytozome:POPTR_0004s03900.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc243t1" CDS join(24919415..24919539,24919630..24920623) /locus_tag="TCM_029918" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Dof-type zinc finger DNA-binding family protein, putative isoform 1" /protein_id="EOY28319.1" /db_xref="Phytozome:POPTR_0004s03900.1" /db_xref="TAIR:AT1G07640.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYL3" /translation="MLTSHHLPGNFLAFDTLHYPIASKHHTVWLISKNLIILLFFRTL LLIALTCGSLLEVSEVRYRDMGLSSKQVSSDGLGWSQSLLQAQTLGLPKASPAKRQQP QNQQQQSEPLKCPRCDSTNTKFCYYNNYNKSQPRHFCKTCKRHWTKGGTLRNVPVGGG RKNKRLKTSNSSTAAAAPASTSTTSAIKSSTASGVNNNRLNTFMAVQPQQQRQDLQLP LADQKNISNIQFQALSRPPSSLLQQNSINCSNLDGKSFSTSNGVFLGSTLPLPQTQGL QFPFSSSSSSSFDTTRSSISTSFQSSTIYNYTGETMEDPTITSVIMPTTSGTFSQPWQ VPITSSGMDMTNYWNWDDIDALVSTDLNMPWDDSEIKP" mRNA join(<24919441..24919539,24919760..24921123) /locus_tag="TCM_029918" /product="Dof-type zinc finger DNA-binding family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb07g028850.1.3" /inference="similar to AA sequence:Phytozome:POPTR_0004s03900.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc243t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc243t1" CDS join(<24919441..24919539,24919760..24920623) /locus_tag="TCM_029918" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Dof-type zinc finger DNA-binding family protein, putative isoform 2" /protein_id="EOY28320.1" /db_xref="Phytozome:POPTR_0004s03900.1" /db_xref="TAIR:AT1G07640.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYL3" /translation="EFPRIRHAPLSDRFKTSHCLAYKQESHHPALLQAQTLGLPKASP AKRQQPQNQQQQSEPLKCPRCDSTNTKFCYYNNYNKSQPRHFCKTCKRHWTKGGTLRN VPVGGGRKNKRLKTSNSSTAAAAPASTSTTSAIKSSTASGVNNNRLNTFMAVQPQQQR QDLQLPLADQKNISNIQFQALSRPPSSLLQQNSINCSNLDGKSFSTSNGVFLGSTLPL PQTQGLQFPFSSSSSSSFDTTRSSISTSFQSSTIYNYTGETMEDPTITSVIMPTTSGT FSQPWQVPITSSGMDMTNYWNWDDIDALVSTDLNMPWDDSEIKP" gene complement(24922392..24925110) /locus_tag="TCM_029919" /note="dbxref CacaoGD:Thecc1EG029919" mRNA complement(join(24922392..24923149,24923300..24923499, 24924657..24924789,24924944..24925110)) /locus_tag="TCM_029919" /product="DnaJ subfamily C member 22" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g35030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031372t1" /inference="similar to AA sequence:frave:gene30429" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc474t5" CDS complement(join(24922897..24923149,24923300..24923499, 24924657..24924746)) /locus_tag="TCM_029919" /note="dbxref frave:gene30429; paralog of Thecc1EG031372t1" /codon_start=1 /product="DnaJ subfamily C member 22" /protein_id="EOY28321.1" /db_xref="TAIR:AT1G61065.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W576" /translation="MASTLLLALVFVIDLIAFGLAVAAEQRRSTAAVANDGNESYCVY DKDIATGLGVGSFLFLLLSQILIMVASRCLCCGKAMRPSGSRAWAIVLFITCWVFFFI AEVCLLLGSVRNAYHTKYKNLLNNPPTCATLRKGVFGAGAAFVFLTAIVSELFYVSYS KANELQANHGRDTGVRMGNI" gene complement(24925478..24929418) /locus_tag="TCM_029920" /note="dbxref CacaoGD:Thecc1EG029920" mRNA complement(join(24925478..24926440,24926589..24927816, 24927935..24928069,24928196..24928367,24928558..24928661, 24928850..24928991,24929075..24929418)) /locus_tag="TCM_029920" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03880.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03880.1" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete; weak similarity to Regulator of Vps4 activity in the MVB pathway protein" CDS complement(join(24926400..24926440,24926589..24927816, 24927935..24928069,24928196..24928367,24928558..24928661, 24928850..24928991,24929075..24929316)) /locus_tag="TCM_029920" /note="weak similarity to Regulator of Vps4 activity in the MVB pathway protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28322.1" /db_xref="Phytozome:POPTR_0004s03880.1" /db_xref="TAIR:AT2G14830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H261" /translation="MWSIVIWKPPQASLAWQVCLPVTKLGTASRVSAKYTNFQLNSAG RTGLLWPNQRHCQFWFSLYCDRNMFGILFRWRKASKCKKLVRRVQCRLKFLKIKRLSI IKQSRQDIVDLLRSGQPETAFSHVPLAEEHLKDQSLLTAYDLLEHFCEFVILHVPYIR KHKNCPKDINEAVSTLIFAAAWCGDLPELQTIRKLFEERYGSKFIKAISELHPGNHVN SQVKETLCLKSIPDTMKLSLIVELAKDHAFLPEHTGSNRRLGSNVLLLRRNDNLHWEG FLFEGMAQGDDGITWLAKMQLPRISEEIQAKLPGQIVEVGNSALVKHRYETEMVCNKL SGQGSLESFGSNHPSTTSFGNKMETTRTSSQSEFLVQFNRRTFDLEEVEEIHINTLQD HYAGEKTIFLFNSTLLSATNNFGFSGASLLVSSHCCYNNNHTGKAGLRDRKTCLAESC RRKRSNSMMLTGIFNLKEGQLCHSCLSPVSSVTDISCDDYYGKSGNLSSYQKHIHHGT CPQDRLSRKDPSKDPLLGLPVAHCFKQEACTEVSRNINCIRHTRHSVGEFQNDILIKK NRKLGEAEVAGFPGNCASSCDSCSSGSNPCIETNRVPHQSSPWSMTIAPERVKKTSTD YGSQSDSSKLFQNSKGINSSSCRHVHPKLPDYDELVAKFKALKQELQQRGPSSLPHSL SFCNL" gene 24929869..24932627 /locus_tag="TCM_029921" /note="dbxref CacaoGD:Thecc1EG029921" mRNA 24929869..24932627 /locus_tag="TCM_029921" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029922t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04710.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc527t1" CDS 24930380..24932236 /locus_tag="TCM_029921" /note="paralog of Thecc1EG029922t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28323.1" /db_xref="Phytozome:POPTR_0011s04710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I2B7" /translation="MQGFSIFITIAPLSETMASLFPSSSTTSNTIPTSIASSFLPRTS QLSLAKPKPNFIPKVVSCKATNGDQNPTPSSKNTEKSFLLNKFDRRDVLIGLGGLYGA ASLSQDQFSLAAPISAPELEKCGNAELPEGADPTNCCPPVSRKILDFKPPSSNSPLRV RPAAHLVDDAYIAKYSRAIELMKALPADDPRNFMQQANVHCAYCDGAYDQVGFPDLEL QVHNSWLFFPFHRYYLYFFEKILGKLIDDPTFALPFWNWDSPAGMKMPAMYGNTKSPL YNELRNRSHYPPTLVDLDYNGTDETTTTRDQLTSNLRIMYRQMVSNGKTARLFLGGPF RAGDEPYQGFGSVENVPHGPVHVWCGDNTQPNGEDMGTFYSAARDPIFYAHHSNVDRM WAVWKTLGKKRKDFTDPDWLNASFLFYDENANLVRVKVRDCLDNRSLGYVYQDVDIPW LKTKPTPRKLRKKVASGGPGIALAAEINKKKVIASNQFPIVLDKIVSVDVPRPKKSRS KKEKEDEEEILVIDQIELDGDSFAKFDVYVNDEDDLTIGPDNTEFAGSFVNVPHKHKG GKKMRTCLRLGLTDLLEDLGAEDDDSVVVTLVPKYGKGNVKIGSIKIEFIQD" gene 24934723..24943426 /locus_tag="TCM_029922" /note="dbxref CacaoGD:Thecc1EG029922" mRNA join(24934723..24937130,24943186..24943426) /locus_tag="TCM_029922" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g31290.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029921t1" /inference="similar to AA sequence:ricco:29851.m002367" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1235t1" CDS 24935215..24937017 /locus_tag="TCM_029922" /note="dbxref ricco:29851.m002367; paralog of Thecc1EG029921t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28324.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I2B7" /translation="MASLLPPSSTATNGASPISVTTSFLPKTSQLCIAGKRRRNFVSR AVSCKATNGDQNPSPSTKNVEECSLNKFDRRDVLVGLGGLYGATSLNGPLAFAAPVSP PDVTKCGKADLPAGAKPVNCCPPPSTKILDFKLRPSNSPPRIRPAVHLVDKEYLAKFS RALELMKALPEDDPRSFTQQANVHCAYCDGAYHQIGFPDLDLQVHNSWLFFPFHRYYL YFFEKILGKLIDDPTFAIPFWNWDSPAGMQMPAIYANPNSPLYDENRNPNHQPPTLLD LDFNGTEESSSTRDQISSNLNVMYRQMVSNGKTAKLFLGNAYRAGDQPDPGAGSLENI PHGPIHIWCGDNRQPNLEDMGNFYSAGRDPIFYAHHSNVDRMWSVWKTLGGKRTDFTD SDWLDSGFLFYDENANLVRVKVRDCLDTRKMGYDYQKVDIPWLRAKPTPRRIASKVAR ALGVAHAAETKKKVLSDVQFPLVLNNVVSLEVSRPKKSRSKAEKEEEEEVLVIENIEF DRDQLVKFDVYINDEDDTTIGPDNTEFAGSFINVPHKHRHGNKMTTCLRLGLTDLLEE LGAEDDDGVVVTLVPKSGKGLAKIGGVKIDFARD" mobile_element complement(24937591..24938082) /note="source:CACAO_M_E59357_F33_scaffold_9 1 492" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24938083..24938183 /note="source:scaffold_4_CACTA_0490 3075 3176" /mobile_element_type="transposon:TIR/CACTA" gene 24940495..24951938 /locus_tag="TCM_029923" /note="dbxref CacaoGD:Thecc1EG029923" mRNA join(24940495..24940699,24943506..24945551, 24951546..24951938) /locus_tag="TCM_029923" /product="Larreatricin hydroxylase" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029926t1" /inference="similar to AA sequence:frave:gene30435" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04546t00001" CDS 24943731..24945548 /locus_tag="TCM_029923" /note="dbxref frave:gene30435; paralog of Thecc1EG029926t1" /codon_start=1 /product="Larreatricin hydroxylase" /protein_id="EOY28325.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6UIL3" /translation="MAPLVLQSSSPTIPSSSIQTSFFPKTSQLSLNKKTKKPYYSVPN NVVSCRATNNGNQNPTPSSNSKGDSALNRFDRRDLLIGLGGLYGATNLANDPFALAAP IAAPDLTLCGNAVISETTGETTYCCPPTTTTITDYKPPSFSKLRYRPPAHLVDADYLA KFTKAMNLMKELPSDDPRSFMQQAYVHCAYCNGAYDQVGFPDQDLQVHFSWLFFPFHR WYLYFYERILGKLIGDPDFVMPFWNWDAPAGMPIPAIYVNPQSPLYDDKRNVNHQPPK LADLDYNGTDKDITDAEQIAINLKLMYKQMVSNATTATLFHGKPYRAGDAGSPGGGSV ELGCHTAIHRWVGDPRQTYNEDMGNFYSAGRDPVFYAHHGNVDRMWSIWKTLPGTKRN DFSDTDWLDASFVFYDENANLVRVKVRDCVDSKNLGYDYQPVDNPWLKTKPTARKFAK KGGKARGSAMAAEIKSKNVVRNAFPIVLDKTVSIEIPRPRKSRSKREKEEDEEVLVLE GIQLATQAAVKFDIYINDEDDEAPSGPEDAEFAGSFTNIPHSHTHAKKLNTTFSLAIS DVLEDLDVEGDDNIVVTLVPREGKGLVSVGNIKVDYIRE" mobile_element 24946568..24946823 /note="source:INTACT579_F10_scaffold_3-int 3162 3430" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24947184..24947282) /note="source:CACAO_M_E34142_F67_scaffold_4 5625 5723" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24947483..24949482 /note="source:INTACT1313F_F380_scaffold_7-int 15544 17464" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24951985..24954198 /locus_tag="TCM_029924" /note="dbxref CacaoGD:Thecc1EG029924" mRNA 24951985..24954198 /locus_tag="TCM_029924" /product="Larreatricin hydroxylase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029926t1" /inference="similar to AA sequence:frave:gene30435" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05256t00001" CDS 24952107..24953723 /locus_tag="TCM_029924" /note="dbxref frave:gene30435; paralog of Thecc1EG029926t1" /codon_start=1 /product="Larreatricin hydroxylase" /protein_id="EOY28326.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I2B7" /translation="MAFPVLLSSNPIIVPSLSIQTSFFPKTSQLSLNEKIKKPHYSVP NKVVSCKAANNGNQNPTPSSRKTTKIIDFKLPSFSKLRYRRPAHLVDADYVAEFTKAV NLMKDLPPDDPRSFMQQANVYRAYCNGAYDQVGFPDQDLQIHFSSLFFPFHRLYLYFY ERILGKLIGDPDFAMPFWNWDAPAGMSIPAIYVNPQSLLYDDKRNVSHQPPKLVDLDY NGTDKEITDKELVLSNLKVMYRQMVSGAKTASLFHGKVYRAGDKPIPGAGSIEAGCYT AIRMWVEDQKQEYEEDMGNFYSSGRDVMFYGLHANVDRMWSVWEKTLGQNNFNDAERL NATFYFYDENANLVRAKVRDCLDNKTLGYDYEPVEMPWRLTKPVTRKLGKKGGRGHGH AMAAEIKNKNIIRNAFPIVLDKTLSIEIPRPRKSRSKREKEEEEVLVLESIQLERDAS VKFDVYINDEDDEAPSGPEDAEFAGSFTNIPHNHKHAKKLETSFSLAISDLLEDLDVE GDDNIVVTLVPRRGKGLVTVGNIKINYIRE" gene 24958585..24960139 /locus_tag="TCM_029925" /note="dbxref CacaoGD:Thecc1EG029925" mRNA 24958585..24960139 /locus_tag="TCM_029925" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g31290.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029926t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2880t5" CDS 24958621..24959460 /locus_tag="TCM_029925" /note="paralog of Thecc1EG029926t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28327.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYL5" /translation="MASPVLPLSTQTTISNSSIQTSFFPKTSQVSLNKKITKPDCSNP NRVVSCKATNDGNKGDSSPNRFDRRDLLIGLGGLYGATNLSNDPFALAAPIAAPDLTL GGDAIISDKKKETKYRKFAKKGGSGHGHGHAMAAETKKKNVIRSVFPIVLDKIVTVEI PRPKKSRTKLEKDEEEEVLVLESIQLRTDTPVKFDVYINDEDDEAPSGPEDSEFAGSF TNIPHNHKHAKKLETSYSLAISDLLEDLDVEGDDNIVVTLVPREGKGLVSVGNIKIDY IRE" gene 24960472..24968827 /locus_tag="TCM_029926" /note="dbxref CacaoGD:Thecc1EG029926" mRNA join(24960472..24960935,24962051..24962226, 24966613..24968827) /locus_tag="TCM_029926" /product="Larreatricin hydroxylase isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029923t1" /inference="similar to AA sequence:frave:gene30435" /note="transcript variant 1; alternatively spliced; quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00237t00004" CDS join(24962224..24962226,24966613..24968418) /locus_tag="TCM_029926" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene30435; paralog of Thecc1EG029923t1" /codon_start=1 /product="Larreatricin hydroxylase isoform 1" /protein_id="EOY28328.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6UIL3" /translation="MYHQILAMASPVLPSSTPTTISSSPIQTSFFPKTSQLFLNKKIK KPDYSGPSKVVSCKATNNGSKGDSSLNRFDRRDLLIGLGGLYGATNLSNDPFALAAPI AAPDLTLCGDATISDTTKETVYCCPPETTKVIDFKPPTYSKIRYRSAAHLVDPDYLAK FTKAMELMRALPDDDPRSFKQQANIHCAYCNGAYDQVGFDQDIQVHFSWLFFPFHRLY LYFYERILGKLIGDPDFAMPFWNWDAPAGMPIPAIYVNPNSPLYDDKRNVNHQPPKVV DLDYNGTDKDITDKAMVQSNLKVMYKQMVSGSKTASLFHGKVYRAGDKPSPGGGVVEL GSHTAIHRWCGDPRQTYSEDMGNFYSAGRDPLFYAHHSNVDRMWSIWKGLPGKKRNDF TDTDWLDASFVFYDENANLVRARVRDCLDTRTLGYDYQGVDVPWLKTKPVPRKFSKKG GKGHGQAVAAETKNKNVIRNAFPIVLDKIVSIEIPRPKKSRTKLEKEEEEVLVLESIQ LDTSTPVKFDIYINDEDDEAPSGPEDSEFAGSFTNVPHNHSHSKKLETSFSLAISEVL EDLDVEGDDNIVVTLVPREGKGLVSVGNIKIDYIRE" mRNA join(24966600..24967820,24968092..24968697) /locus_tag="TCM_029926" /product="Larreatricin hydroxylase isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029923t1" /inference="similar to AA sequence:ricco:29851.m002367" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00038t00001; inference alignment:Newbler:10:TSA:cgbaP2_g00237t00004" mRNA join(24966600..24967820,24968092..24968526) /locus_tag="TCM_029926" /product="Larreatricin hydroxylase isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029923t1" /inference="similar to AA sequence:ricco:29851.m002367" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00038t00005; alternateUTRof:Thecc1EG029926t2; inference alignment:Newbler:10:TSA:cgbaP2_g00237t00004" CDS join(24966631..24967820,24968092..24968137) /locus_tag="TCM_029926" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29851.m002367; paralog of Thecc1EG029923t1" /codon_start=1 /product="Larreatricin hydroxylase isoform 2" /protein_id="EOY28329.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q68NI4" /translation="MASPVLPSSTPTTISSSPIQTSFFPKTSQLFLNKKIKKPDYSGP SKVVSCKATNNGSKGDSSLNRFDRRDLLIGLGGLYGATNLSNDPFALAAPIAAPDLTL CGDATISDTTKETVYCCPPETTKVIDFKPPTYSKIRYRSAAHLVDPDYLAKFTKAMEL MRALPDDDPRSFKQQANIHCAYCNGAYDQVGFDQDIQVHFSWLFFPFHRLYLYFYERI LGKLIGDPDFAMPFWNWDAPAGMPIPAIYVNPNSPLYDDKRNVNHQPPKVVDLDYNGT DKDITDKAMVQSNLKVMYKQMVSGSKTASLFHGKVYRAGDKPSPGGGVVELGSHTAIH RWCGDPRQTYSEDMGNFYSAGRDPLFYAHHSNVDRMWSIWKGLPGKKRNDFTDTDWLD ASFVLKKKKKKYWCWKAFS" CDS join(24966631..24967820,24968092..24968137) /locus_tag="TCM_029926" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29851.m002367; paralog of Thecc1EG029923t1" /codon_start=1 /product="Larreatricin hydroxylase isoform 2" /protein_id="EOY28330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q68NI4" /translation="MASPVLPSSTPTTISSSPIQTSFFPKTSQLFLNKKIKKPDYSGP SKVVSCKATNNGSKGDSSLNRFDRRDLLIGLGGLYGATNLSNDPFALAAPIAAPDLTL CGDATISDTTKETVYCCPPETTKVIDFKPPTYSKIRYRSAAHLVDPDYLAKFTKAMEL MRALPDDDPRSFKQQANIHCAYCNGAYDQVGFDQDIQVHFSWLFFPFHRLYLYFYERI LGKLIGDPDFAMPFWNWDAPAGMPIPAIYVNPNSPLYDDKRNVNHQPPKVVDLDYNGT DKDITDKAMVQSNLKVMYKQMVSGSKTASLFHGKVYRAGDKPSPGGGVVELGSHTAIH RWCGDPRQTYSEDMGNFYSAGRDPLFYAHHSNVDRMWSIWKGLPGKKRNDFTDTDWLD ASFVLKKKKKKYWCWKAFS" gene complement(24968829..24994254) /locus_tag="TCM_029927" /note="dbxref CacaoGD:Thecc1EG029927" mRNA complement(join(24968829..24968996,24974593..24974687, 24977205..24977452,24977552..24977704,24977819..24977983, 24978099..24978264,24978407..24979880,24980164..24980290, 24980377..24980472,24980575..24980760,24983295..24983483, 24983571..24985318,24985779..24986032,24986637..24986789, 24986904..24986956,24987063..24987103,24987255..24987385, 24987818..24987994,24988152..24988414,24993901..24994254)) /locus_tag="TCM_029927" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04670.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04670.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7544t3" mobile_element 24971279..24976808 /note="source:INTACT606F_F361_scaffold_4-int 23 5562" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(24977249..24977452,24977552..24977704, 24977819..24977983,24978099..24978264,24978407..24979880, 24980164..24980290,24980377..24980472,24980575..24980760, 24983295..24983483,24983571..24985318,24985779..24986032, 24986637..24986789,24986904..24986956,24987063..24987103, 24987255..24987385,24987818..24987994,24988152..24988210)) /locus_tag="TCM_029927" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28331.1" /db_xref="Phytozome:POPTR_0011s04670.1" /db_xref="TAIR:AT4G04980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GZF1" /translation="MDSTVLLDRALFQLTPTRTRFDLVLFSKGKNEKLASGLFDPFIS HLKFARDQISKGGYSITLQPPAPGAPWFTKATFERFVCFVSTPAVLERFVSIEREILQ IERSVQANELNANVDGRQEEDVNGNTRNSTDFTKVNGELKTKDDIAREENSKIQLQWL LETRKALLRKEQAMTFARGLVAGFAMENMEHLISFADAFGASRLKEACINFKELCKEK HTDRRWMEELAAVEACLPSELPLLRTSGIVLANGISIPNPSIMSNFPINGASTGDHAP NESSEASAVDCKKDENLPASDQTPSTTTKYQVPMQWTNQMPQHMYNLQGPVQQLPPYQ GYPFHPMQPVPLPYPMNMQWTPSRNQKSASRQKKKLSNGKGLEYSGEERQTESSGSGS ESDSSSDVQQEDRKQSSLDPPYRRKNHKKSSRTVVIRNINYITPKRRSGEKGQFSDGS YSGEDDLIDTDSFKQTVDDAVKSLKESSKVNSSYNKRRGAEKSHHIANKSNDASHQGD SNDLDVNTSEEEKRNENWAALQNLLMRDEESMSVNEVEWKQAEDVQEHFVARNFDGEI SATTPAVNLESQNVPIQRTVLGDSFVMTERDGKNETRMKLDDFNNGENYRPVMKRRDC VEVDLLHPERLEESGNKLGNLISTCANKSSVIRSGKEEDWFVGNHSVKPENQDSANNQ MLFNGDHILSVESDPLYSQKSRKDILIDDSFMVAARPAVDDQDDSRWKTDISLVANLS SPSNPDGNTDASQDERKVLDSHDSNDLCMVLERNPGYDSSRDSWTMDYQIDLSFSEPN RTAASEHSDEKVPSNHENTIVKPNGVLGTKRPVKEARSKVLNGSLGKSKAEIMSKSKK PSLVSRSTIQKSKLDKEEEMRKKMEELLIERQKRIAERTAACGYASPASKKALLESKA AKSSIKSDKNKNLSTAQATNRALKTSQKSKVSKNQKEMKGLTKDSSSQPACNFILMME LRKKIITFRDIIDLPPCTTSVSTDELMLGTMKDLHKFYPESIPHFRWSELKALPFDQV LTYFCKALQDLGDASKMNDEWIDKYRYDIYDNDKSKNNEKLVEIAVATLNGLIKIARE KFDMMDEDEEKKDFSPEANTFGKVLKDSYSDNCSSCPSPVTPTSVLPELINGTPKSPY SSSLLLSLRVQAVGKLNPIDVKRLTLHMLPNVGVQVPSSLSQKKITIEEQKEDDETRD STSQNETSEDLHSMSNNVPGDTITDHGNNTEPPKFSPNVAQTPPSSPSEKQSPELWRD MQEAEEKLPPTPPEVLTPVLPSQPEKLSTDMEADIGRLHPSPPAPSAEVLSSLPPSQP AELSTDMEIDIRQLPPPPPPPPPFFQPNVVAGRPPLPPTPLPMRQGSTKAAQPTSVAT EPQLPSPPSKLTNTGATGIPIPPPPPPPAPLQSNVVATGASLPPPPPVPLQSKVVATR AQLPPPPPPLPKLSGAASVIPPPPPPMMLSKGSVPLPPPPPPPPMSMANGAVPPPPPL GAAKSLRPKKANTKLKRSSHIGNLYRVLKGKVEGYSVQGKSPDGKKGGVGRSASGKQG MADALAEMTKRSAYFQQIEEDIQKYAQSITTLRTAIITFNTKDMTKLLEFHKHVESIL ENLTDETQVLARFEGFPTKKLEALRTASALYSKLESMITELQNWKIEPPLGQLLDKVE RYFNKMKDEIDALERTKDEESKKFKSHNIDFDFQIFLRIKEAMVDVSSNCMELALKER REVKLAENEGSKTKAEAQKKGCAKMLWRAFQLAFRVYTFAGGHDDRADKLTRELAREI ETDPQHQ" gene 24994352..24995418 /locus_tag="TCM_029929" /note="dbxref CacaoGD:Thecc1EG029929" mRNA join(24994352..24994965,24995152..24995418) /locus_tag="TCM_029929" /product="Toll-Interleukin-Resistance domain family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031369t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03840.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2341t1" CDS join(24994475..24994965,24995152..24995272) /locus_tag="TCM_029929" /note="paralog of Thecc1EG031369t1" /codon_start=1 /product="Toll-Interleukin-Resistance domain family protein" /protein_id="EOY28332.1" /db_xref="Phytozome:POPTR_0004s03840.1" /db_xref="TAIR:AT1G61105.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H257" /translation="MQQRCASSAKNLCRKILQPRTSIEATTRPPCDIFINHRGIDTKR TIAGLLHDHIFRLGLRPFLDSRNMKPGDRLFEKINPAIRNCKLGVAIFSPNYCDSYFC LHELALLMESKKRVIPIFCDVKPSQLQVKDYGTRSARQLQRFSLALEEAKYTVGLTFD TLTGDWSEFLNTATDAVIKNLVEVEAENSSKKSTYIVQDREQE" gene 25006550..25010541 /locus_tag="TCM_029930" /note="dbxref CacaoGD:Thecc1EG029930" mRNA join(25006550..25007040,25007125..25007183, 25008190..25008246,25008379..25008517,25008663..25008738, 25008816..25008874,25008953..25009018,25009100..25009183, 25009316..25009380,25009550..25009632,25009711..25009851, 25009979..25010119,25010254..25010541) /locus_tag="TCM_029930" /product="Alpha-galactosidase 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006484001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007627t1" /inference="similar to AA sequence:Phytozome:GSVIVT01006484001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1031t1" CDS join(25006877..25007040,25007125..25007183, 25008190..25008246,25008379..25008517,25008663..25008738, 25008816..25008874,25008953..25009018,25009100..25009183, 25009316..25009380,25009550..25009632,25009711..25009851, 25009979..25010119,25010254..25010349) /locus_tag="TCM_029930" /note="paralog of Thecc1EG007627t1" /codon_start=1 /product="Alpha-galactosidase 2" /protein_id="EOY28333.1" /db_xref="Phytozome:GSVIVT01006484001" /db_xref="TAIR:AT5G08370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H256" /translation="MSMAKGFRVKFLFVALLNLWVVHQAACSMNVSSHGHQAHSRFLL DNGVSRTPPMGWNSWNHFHCDLNETIIRSTADALVSTGLAKLGYKYVNLDDCWAEGER DKKGNLRGKLTTFPSGIKALADYVHSKGLKLGIYADAGNRTCSNQMPGSLGHEDQDAR TFAEWGVDYIKYDNCYNDGSKNRGRYVRMSRALQKAGRPIHYSLCEWGQEKPAIWAGA YGHSWRTTGDINDTWASITSIADANDVWARYAGPGGWNDPDMLEVGNGGMTVEEYRSH FSIWALMKAPLLLGCDVSSASRETLSIIGNKEVIDINQDPLGVQGRKIRTKGGLEIWA GPLSRGRVVVVLWNRSRARAPISVGWREIGLSPSRPVTVRDVWKHKFVAMKRRYRLTS SVASHSCKMYVMTPFSG" mobile_element 25011530..25012456 /note="source:CACAO_M_E49282_F119_scaffold_6 1 927" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25014190..25016177 /locus_tag="TCM_029931" /note="dbxref CacaoGD:Thecc1EG029931" mRNA join(25014190..25014492,25014594..25014901, 25015013..25016177) /locus_tag="TCM_029931" /product="NAC domain containing protein 25" /inference="alignment:exonerate- protein:2:ricco:29851.m002359" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031363t1" /inference="similar to AA sequence:ricco:29851.m002359" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7504t1" CDS join(25014309..25014492,25014594..25014901, 25015013..25015576) /locus_tag="TCM_029931" /note="dbxref ricco:29851.m002359; paralog of Thecc1EG031363t1" /codon_start=1 /product="NAC domain containing protein 25" /protein_id="EOY28334.1" /db_xref="TAIR:AT3G15510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N1L1" /translation="MESTDSSSASPHPQLPPGFRFHPTDEELVVHYLKRKAASAPLPV TIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTD KPIVTSNGNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRLVDNNSTSKPQIADVANRK GSLRLDDWVLCRIYKKNNTQRPMERDKDYSTVGMLATLPTSTHQNPKPPTSKATSYGS LLENEENFFEGILTGEGMQHSTISQIPAASSSSKQDLSMSLASTTTNTFPVKRTIPPQ YWNEPNSSFGSQSGKRFQGDLNSSSTAGIDDTNSFVSLLHHLPQNAPFYPGTLVGSLG DGVSRQQFILPSMNWNS" gene 25019552..>25029645 /locus_tag="TCM_029932" /note="dbxref CacaoGD:Thecc1EG029932" mRNA join(25019552..25019960,25020042..25020234, 25020367..25020584,25020695..25020818,25020921..25021042, 25021142..25021374,25022044..25022159,25022267..25022365, 25022500..25022715,25022800..25022929,25023036..25023281, 25023368..25024431) /locus_tag="TCM_029932" /product="P(E)-nerolidol/(E,E)-geranyl linalool synthase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006342001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029933t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03810.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc3758t4" mRNA join(25019577..25019960,25020042..25020234, 25020367..25020584,25020695..25020818,25020921..25021042, 25021142..25021374,25022044..25022159,25022267..25022365, 25022500..25022715,25022800..25022929,25029601..>25029645) /locus_tag="TCM_029932" /product="P(E)-nerolidol/(E,E)-geranyl linalool synthase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006342001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029933t1" /inference="similar to AA sequence:Phytozome:GSVIVT01006342001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc3758t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc3758t4; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc3842t4" CDS join(25019633..25019960,25020042..25020234, 25020367..25020584,25020695..25020818,25020921..25021042, 25021142..25021374,25022044..25022159,25022267..25022365, 25022500..25022715,25022800..25022929,25029601..>25029645) /locus_tag="TCM_029932" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029933t1" /codon_start=1 /product="P(E)-nerolidol/(E,E)-geranyl linalool synthase, putative isoform 2" /protein_id="EOY28336.1" /db_xref="Phytozome:GSVIVT01006342001" /db_xref="TAIR:AT1G61120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GAI0" /translation="MELLHVSIRALVKEIKEEMLDIDPCLFVSSSAYDTAWLAMINPA ADSDRPHSSPMFKACLDWVLNNQTEEGYWGECDSHGNPTIESLPATLACVIALKKWNV GNKNTEKGLDFVHGNAEKLLGVNHDHFPRWFTIVFPGMIELARKAGLELAFPSQLNEL LSDIFYQRQRILETEELVDGQYPPLLSYIEALPSSYDISGEDITMNLSGDGSLFQSPA ATARAFMATGKEECLGYLESLVRRCANGVPPTYPRDEELIKLCVVNQLQRLGLADHFT HEIEANLAQLYRNYNSQGSQAKPRSNPVSAIQLHKDSLAFRLLRMHGYSVSPWQFFWF LKNQEVRARIEKDYEYFSSAMLNVYRATDFMFPGEYELEEARSFSRKVLEKVLFKGTR DNKDNFRSTNLEKMMEHELRHPWIARLDHLEHRTWIEEKNSNVLWVGKASFHRFSTLL TEKLMQLAVADYEFRQLIYRNELEEVKRWSRNRGLSDMGFGREKTTYCFFAIASSIPL PYDSDIRMIIAKGAIVVTVADDFYDMEGSLDELNSLTDAIGRWDASGLRGHSKTIFDA LDDLVREIVAKVLQQQETDITIFLQQIWYETFASWLVEAKWS" CDS join(25019633..25019960,25020042..25020234, 25020367..25020584,25020695..25020818,25020921..25021042, 25021142..25021374,25022044..25022159,25022267..25022365, 25022500..25022715,25022800..25022929,25023036..25023281, 25023368..25023772) /locus_tag="TCM_029932" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029933t1" /codon_start=1 /product="P(E)-nerolidol/(E,E)-geranyl linalool synthase, putative isoform 1" /protein_id="EOY28335.1" /db_xref="Phytozome:POPTR_0004s03810.1" /db_xref="TAIR:AT1G61120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GAI0" /translation="MELLHVSIRALVKEIKEEMLDIDPCLFVSSSAYDTAWLAMINPA ADSDRPHSSPMFKACLDWVLNNQTEEGYWGECDSHGNPTIESLPATLACVIALKKWNV GNKNTEKGLDFVHGNAEKLLGVNHDHFPRWFTIVFPGMIELARKAGLELAFPSQLNEL LSDIFYQRQRILETEELVDGQYPPLLSYIEALPSSYDISGEDITMNLSGDGSLFQSPA ATARAFMATGKEECLGYLESLVRRCANGVPPTYPRDEELIKLCVVNQLQRLGLADHFT HEIEANLAQLYRNYNSQGSQAKPRSNPVSAIQLHKDSLAFRLLRMHGYSVSPWQFFWF LKNQEVRARIEKDYEYFSSAMLNVYRATDFMFPGEYELEEARSFSRKVLEKVLFKGTR DNKDNFRSTNLEKMMEHELRHPWIARLDHLEHRTWIEEKNSNVLWVGKASFHRFSTLL TEKLMQLAVADYEFRQLIYRNELEEVKRWSRNRGLSDMGFGREKTTYCFFAIASSIPL PYDSDIRMIIAKGAIVVTVADDFYDMEGSLDELNSLTDAIGRWDASGLRGHSKTIFDA LDDLVREIVAKVLQQQETDITIFLQQIWYETFASWLVEAKWSRGGFLPSIDEYLGTGM ISIAAHTIILPASFLLNPSLIDCKVRPGEYETVTKLLMLIPRLLNDIQSYQKEQEEGK MNCVLLYLKENPGADIEDSTAYVREILDKKWGELLQHVLMDGFEDLPKPCKLLHLSCV KVFQMFFHSRNRFDSNTEMLQDIQKAIYVPLNVGTSKPLMPPQKEDETINSHSGRPPK YEISQIELASS" gene 25024482..25031546 /locus_tag="TCM_029933" /note="dbxref CacaoGD:Thecc1EG029933" mRNA join(25024482..25024598,25025880..25026218, 25026300..25026492,25026629..25026846,25026957..25027080, 25027183..25027304,25027404..25027636,25028605..25028720, 25028828..25028926,25029060..25029275,25029366..25029495, 25029601..25029846,25029933..25030287,25030638..25031546) /locus_tag="TCM_029933" /product="P(E)-nerolidol/(E,E)-geranyl linalool synthase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029932t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03810.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc3842t4" CDS join(25025888..25026218,25026300..25026492, 25026629..25026846,25026957..25027080,25027183..25027304, 25027404..25027636,25028605..25028720,25028828..25028926, 25029060..25029275,25029366..25029495,25029601..25029846, 25029933..25030287,25030638..25030759) /locus_tag="TCM_029933" /note="paralog of Thecc1EG029932t1" /codon_start=1 /product="P(E)-nerolidol/(E,E)-geranyl linalool synthase" /protein_id="EOY28337.1" /db_xref="Phytozome:POPTR_0004s03810.1" /db_xref="TAIR:AT1G61120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GAI0" /translation="MELLHVSIQAIVKDVKGEMSLDIDPYSFVSPSAYDTAWLAMINP AADSNRPLSSPMFKACLDWVLNNQTEEGYWGECDSQGNPTIESLPATLACVIALKKWN VGNKNIERGLDFVHGNAEKHLGVTHDHFPRWFTIVFPGMIELALKAGLELAFPSQLNE LLSDIFHQRQRILETEELVDSQYPPLLSYIEALPSSYDISGEDITMNLSGDGSLFQSP AATARAFMATGKEECLGYLESLVRRCADGVPPTYPMDEELIKLCVVNQLQRLGLADHF THEIEANLAQLYRNYNSQESQAKPSSNPVSAIQLHKDSLAFRLLRMHGYSVSPWQFFW FLKNQEVRARIEKDYEYFSSAMLNVYRATDFMFPGEYELEEARSFSRKVIEKVLSKGT RDNKDNFRSINLEKMMEHELRHPWIARLDHLEHRTWIEDRNSNILWVGKAFLHRLSPL LTEKLMQLAVADYEFRQFIYRNELEEVKRWSKNRGLSDMGFGREKTTYCYFAIASSIP LPYDSDIRMMIAKSAIVVTVADDFYDMEGSLDELNSLTDAIGRWDASELTGHSKTIFD ALDDLVREIVAKVLQHQGTDITIFLQQIWYETFASWLVEAKWSRGGSLPSIDEYLRTG MISIAAHTIILPASFLSNPSLIDCKVRPGEYEAVTKLLMLIPRLLNDIQSYQKEQEEG KMNCVLLYLKENPGADIEDSTAYVREILDKKWGELLQHVLMDGFGDLPKPCKLLHLSC VKVFQMFFHSRNRFDSNTEMRQDIQNAIYVPLNVGTSKPLIPPQKEDQAINSLSEMLK IIAVQCPNPSKLFIIEVPINVVWGSGGIAMEKGMTV" mobile_element 25027877..25028016 /note="source:scaffold_7_CACTA_0795 2846 2982" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25028036..25028223 /note="source:scaffold_9_CACTA_0942 5072 5256" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25030842..25031256 /note="source:CACAO_M_E49283_F57_scaffold_6 1 415" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25032839..25032942 /note="source:CACAO_on_S_E46_scaffold_2 470 573" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(25033566..25034571) /note="source:scaffold_5_CACTA_0608 4927 6053" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25039322..25039405) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3866 3933" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25039323..25039423 /note="source:scaffold_3_CACTA_0392 2729 2834" /mobile_element_type="transposon:TIR/CACTA" gene 25039616..25044356 /locus_tag="TCM_029935" /note="dbxref CacaoGD:Thecc1EG029935" mRNA join(25039616..25040010,25040135..25040327, 25040582..25040799,25040890..25041013,25041776..25041897, 25041989..25042221,25042323..25042438,25042554..25042652, 25042771..25042986,25043104..25043233,25043327..25043575, 25043656..25044356) /locus_tag="TCM_029935" /product="P(E)-nerolidol/(E,E)-geranyl linalool synthase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03810.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029932t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03810.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1433t1" CDS join(25039680..25040010,25040135..25040327, 25040582..25040799,25040890..25041013,25041776..25041897, 25041989..25042221,25042323..25042438,25042554..25042652, 25042771..25042986,25043104..25043233,25043327..25043575, 25043656..25044147) /locus_tag="TCM_029935" /note="paralog of Thecc1EG029932t1" /codon_start=1 /product="P(E)-nerolidol/(E,E)-geranyl linalool synthase, putative" /protein_id="EOY28338.1" /db_xref="Phytozome:POPTR_0004s03810.1" /db_xref="TAIR:AT1G61120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GAI0" /translation="MELSHVSIHALIKEIKDEMLSDYIDPYSFVSPSAYDTAWLAMIP ADSNSQPCSAPMFKDCLDWVLNNQTEEGYWGERDAHGNPTIESLPATLACLIALKKWN VGIENVERGLTFIQANVEKLHKRNHNRFPRWFTIVFPEMIEFARTIGLQIDFSNHSQK LLIDIFSERQKIFKIEELTDSSYPLLLSYLEALPSFYAINEEDITMHLSDDGSLFQSP SATARAFMATGNKQCLAYLQSLVRRCGNGVPPTYPMDEDLIKLGLANQLERLGLAEHF TQQIEDILTQVYRNYNKQESLAKPSHGTSIATQLYKDSLAFRLLRMHGYNMSPWSFCW FLNNQEVLDHIGKNNEYFSSVMLNVYRATDLMFSGEYELEEARSFSRKVLEKVASEGN RDDDHFTKSLNLQKMIEHELSLPWVARLDHLEHRSWIEENDMNALWAGKTSFHRFSSL MNEKLVQLAVGDYEFRQSIYKNEMAELKSWCLKRGLTDMGFGREKTMYCYFATSACLS LPYDSVIRMMVAKSAILITVADDFFDMEGSLNELNILTDAVKRWDGDGLSGHGKTIFD ALDDLVRETAGKHLQQQGTDIKGYLQQIWYETFASWLVEAKWSKSGYLPLLDEYLGTG MTSIAAHTLVLPASCLLKSSLPNSKINPAAEYETVTKLVMLIPRLLNDIQSYQKEIED GKMNYVLLYMKENPEADINDSIAFVRDLLDKKRKELLKHVLTDGLSDLPEASRHLHLS CMKVFQMFFNSSNRYDSNTEMLQDIQKAIYIPPDIGISKPLMPLPSDSGPKKEFRTTT SHFVQPVKYHSKRIIGYQASLPIARRGYASMLITPNFRMSFS" mobile_element complement(25041041..25041686) /note="source:CACAO_on_E34_scaffold_5 1 665" /mobile_element_type="transposon:TIR/hAT" mobile_element 25045365..25045623 /note="source:CACAO_hAT_E71_scaffold_1 569 860" /mobile_element_type="transposon:TIR/hAT" mobile_element 25045506..25045778 /note="source:CACAO_on_SS_E42_scaffold_2 24196 24477" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(25045684..25045789) /note="source:CACAO_Again_on_E226_scaffold_10 34 143" /mobile_element_type="transposon:TIR/hAT" mobile_element 25045860..25046004 /note="source:scaffold_6_CACTA_0699 13649 13794" /mobile_element_type="transposon:TIR/CACTA" gene 25046060..25048968 /locus_tag="TCM_029936" /note="dbxref CacaoGD:Thecc1EG029936" mRNA join(25046060..25046474,25048027..25048152, 25048242..25048968) /locus_tag="TCM_029936" /product="P(E)-nerolidol/(E,E)-geranyl linalool synthase, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029935t1" /inference="similar to AA sequence:Phytozome:Glyma13g25270.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS join(25046198..25046474,25048027..25048152, 25048242..25048369) /locus_tag="TCM_029936" /note="paralog of Thecc1EG029935t1" /codon_start=1 /product="P(E)-nerolidol/(E,E)-geranyl linalool synthase, putative" /protein_id="EOY28339.1" /db_xref="Phytozome:Glyma13g25270.1" /translation="MLSDYIDPHSFVSPSAYDTAWLAMIPADSNLQPCSVPMFKDCLD WVLNNWTEEGYWAECDAHGNPTIESLLATLACAIVLKKWNVGIENEDRDITCDNGSLS QSPSATACAFMATGNKECLACLRALVRRCGNGVPPTYPMDEELIKLGLANQPQRLGSA EHFSQQIEDILTQVYR" mobile_element complement(25047559..25047623) /note="source:CACAO_Mutator_E1376_scaffold_6 1919 1982" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(25047642..25047705) /note="source:CACAO_Mutator_E1376_scaffold_6 1920 1982" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(25047792..25047883) /note="source:CACAO_Mutator_E1376_scaffold_6 1878 1968" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(25047882..25048034) /note="source:CACAO_Mutator_E1376_scaffold_6 1864 2016" /mobile_element_type="transposon:TIR/Mutator" gene complement(25049663..25057571) /locus_tag="TCM_029937" /note="dbxref CacaoGD:Thecc1EG029937" mRNA complement(join(25049663..25050044,25050404..25050509, 25050596..25050691,25050816..25050946,25051247..25051537, 25051678..25051760,25051832..25051924,25052280..25052375, 25052626..25052733,25053257..25053584,25057114..25057571)) /locus_tag="TCM_029937" /product="Serine carboxypeptidase-like 31" /inference="alignment:exonerate-protein:2:frave:gene30443" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007725t1" /inference="similar to AA sequence:Phytozome:GSVIVT01006341001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7502t1" CDS complement(join(25049898..25050044,25050404..25050509, 25050596..25050691,25050816..25050946,25051247..25051537, 25051678..25051760,25051832..25051924,25052280..25052375, 25052626..25052733,25053257..25053557)) /locus_tag="TCM_029937" /note="paralog of Thecc1EG007725t1" /codon_start=1 /product="Serine carboxypeptidase-like 31" /protein_id="EOY28340.1" /db_xref="Phytozome:GSVIVT01006341001" /db_xref="TAIR:AT1G11080.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYM1" /translation="MNMDFGRKLALFLILAFVSTISSVHPVTDDRHWRWYSKKELSSL GNDDLVTNLPGQPAVDFRHYAGYVTVNQKNGRALFYWFYEAMSHPDEKPLVLWLNGGP GCSSVGYGATQEIGPFIVDTDGRGIKFNNFSWNKEANMLFLESPVGVGFSYSNTSTDY DKLGDEFTANDSYNFLHQWFLKFPSYRNRTFYIAGESYAGKYVPELAELINDNNKDPS LRIELKGILLGNPETDGPEDWKGLMDYAWSHAVVSDETHKIISENCDFYSNDPWSNED CNQAVDEVFKQYKEIDIYSLYTSVCIGDTAGSDDKSLLQVMMKRKSNMMPRILGGYDP CLDNYAKAFYNRLDVQKALHVSDGQHLRNWSICNHKIFDDWSDSKRSVLPIYKKLIAA GVRIWVYSGDTDGRVPVLSTRYSLKTLGLPIIMAWRPWYHQKQVSGWFQEYKGLTFAT FRGAGHAVPCFKPSSSLAFFSAFLLGESLPYSR" mobile_element 25058162..25058527 /note="source:scaffold_10_CACTA_0130 7902 8270" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25058534..25059789 /note="source:scaffold_10_CACTA_0130 8380 9608" /mobile_element_type="transposon:TIR/CACTA" gene 25060874..25062713 /locus_tag="TCM_029938" /note="dbxref CacaoGD:Thecc1EG029938" mRNA join(25060874..25061066,25061579..25062713) /locus_tag="TCM_029938" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29917.m001936" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029939t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04630.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc848t2" CDS 25061582..25062529 /locus_tag="TCM_029938" /note="paralog of Thecc1EG029939t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY28341.1" /db_xref="Phytozome:POPTR_0011s04630.1" /db_xref="TAIR:AT1G11090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04083" /translation="MEREEEIHYWGNVSEEDYYKQQGIKASKSFYTSPRGLSLFTRSL LPISGSPRGVIFGVHGYGSDTSWTFQSTPIFLAQKGFACFALDIEGHGRSQGLRGYVP NVDLVVQDCLSYFNLIKQDPNLDGLPCFLYGESMGGAICLMIHFADPEGFQGAILVSP MCKIPDQLTPGWPIRQVVAFISKLLPTLAIVPTEDVLYKSIKVEEKKIIGNKNPLRYR GKPRLGTALELLRITEYLGQKLCDVSIPFLVVHGSADVVTEPEVSRTLYEEASSQDKT IKIYEGMWHSLLFGEPDDNIEIVRSDILSWLNDRCNRKI" mobile_element 25063714..25064151 /note="source:scaffold_5_CACTA_0615 1601 2032" /mobile_element_type="transposon:TIR/CACTA" gene 25064668..25066064 /locus_tag="TCM_029939" /note="dbxref CacaoGD:Thecc1EG029939" mRNA 25064668..25066064 /locus_tag="TCM_029939" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29917.m001936.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029938t1" /inference="similar to AA sequence:frave:gene30444" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05151t00001" CDS 25064828..25065775 /locus_tag="TCM_029939" /note="dbxref frave:gene30444; paralog of Thecc1EG029938t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY28342.1" /db_xref="TAIR:AT1G11090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04083" /translation="MEREEDIHYWGNISEEDYHKQQGIKGSKSFYTSPRGLSLFTRSW LPISGTPRGVIFGVHGYGNDMSWTFQSTPIFLAQKGFACFALDLEGHGRSQGLRGYVP NVDLVVQDCLSYFNLIKQDPNLDGLPCFLYGESMGGAICLLIHFADPKGFRGAILVSP MCKISDKVKPRWPLPQVLTFIAKLLPTLAIVPTEDLLYKSVKVEEKKIIGNKNPLRYR GKPRLGTVVELLRVTEYLSQKLCDVSIPFLVVHGSADVVTDPAVSRTLYEEASSQDKT IKIYEGMWHSLLFGEPDDNIEIVRSDILSWLNDRCNTKI" gene complement(25066433..25076967) /locus_tag="TCM_029940" /note="dbxref CacaoGD:Thecc1EG029940" mRNA complement(join(25066433..25066455,25066578..25066750, 25067330..25067539,25067663..25068262,25068942..25069160, 25069295..25069425,25069599..25070505,25070583..25070660, 25071317..25071388,25072137..25073335,25073478..25073867, 25073957..25074032,25074550..25074932,25075942..25076292, 25076392..25076967)) /locus_tag="TCM_029940" /product="SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3, putative" /inference="alignment:exonerate-protein:2:frave:gene30445" /inference="similar to AA sequence:Phytozome:POPTR_0004s03790.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc931t2" CDS complement(join(25066646..25066750,25067330..25067539, 25067663..25068262,25068942..25069160,25069295..25069425, 25069599..25070505,25070583..25070660,25071317..25071388, 25072137..25073335,25073478..25073867,25073957..25074032, 25074550..25074711)) /locus_tag="TCM_029940" /codon_start=1 /product="SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3, putative" /protein_id="EOY28343.1" /db_xref="Phytozome:POPTR_0004s03790.1" /db_xref="TAIR:AT1G61140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYM3" /translation="MLMMGEDIGNDSSGFLPRGDPSTDDKFDDLVSDSLCIDLDTFNR ILEENSDPLQRNPDDPSGRNMLQGDSAPVSIHFQSGFQLFKELPSSGFGFEDLLRYSS EASDARAGSVGGSFDFHGKLESSAQNCSPVQTSSASFKEWFPIGQGTSYTEGVGMSLL EVPSCSTASSFAEIDGNHVLDRRDNLNFDLVDNRTGIQFKNTSDEFDYKNALFSPDAE NINLIYEHSGDYRINTLQTLEATENDVARSVEFPSFGADMSSHNVTSIESTICHGSDV ISDFSDPSSVILHRATGDDACFADCSTHYLPSSQNFMFEESMEGEVVEFPTESACSSS RIIFNAQGGTDNRSMSGLSMTHFSDVKRQYFEGKGNGHISPACGNLSYIANDGCFDGK GSVQPFDHSHSCISNNIFFHSAEALDKTSWVKSTNRADDSLSVDEDSKHSLSDISPSI SNQEFTVNGKDAPQYYQDINLNVSSHSSLGGGGHLNLTSSEQYFSSSHPIPSTKMQLG CYGDERENKLIPPRSMGLSKVSPESIHSNSSDCRSHDDDEPEIRILEDISQPARTNQS LVLVKKTSSLPNTTFSNPLHNSGMGGIRPKGNDERLIFRVALQGLSQPKSEASPPDGV LTVPLLRHQRIALSWMTQKEKAGSHCLGGILADDQGLGKTVSTIALILKEKPPSSRAS SQDMRKVQFETLNLDDNDDDHNEGMKQESVSSQVTSNGAIEKSSSPSGQAKGRPAAGT LIVCPTSVLRQWAEELNNKVTSKANLSVLVYHGSNRTKDPFELAKYDVVLTTYSIVSM EVPKQPPVRGDDDEKGKLEGDNLSSMDFPPSRKRKYSPCSNKKGVKHKKEVDELHVDS ASRPLAKVGWFRIVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSY FRFLRYDPYAAYKSFCSSIKFPITKNPGKGYPKLQAILQTIMLRRTKGTLLDGKPIIN LPPKVIELKKVEFTKEERDFYSRLETDSRNQFKEYAAAGTVKQNYVNILLMLLRLRQA CDHPLLVRGFDSNSLCSSSIETAKKLPEEKLTFLLSCLASLALCGICNDPPEDAVVAV CGHVFCNQCISEHLSGDDNQCPTTNCKVRLSASSVFSNATLSSTLSEQPGQDSSLNCS GSQIVEVIGPHSEDCSYGSSKIKAALQVLQLLAKPQDHSLKSSGCLEGLSDLHSGDSP NGVLDEKNFGTGESLNDSCKVLGEKAIVFSQWTRMLDLFEGCLKSSSIHYRRLDGTMS VAARDKAVKDFNALPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRA HRIGQTRPVTVLRLTVKDTVEDRILALQQKKREMVASAFGEDETGGRQTRLTVEDLEY LFMA" mobile_element complement(25075515..25075594) /note="source:scaffold_8_CACTA_0850 11643 11722" /mobile_element_type="transposon:TIR/CACTA" gene 25077564..25080968 /locus_tag="TCM_029941" /note="dbxref CacaoGD:Thecc1EG029941" mRNA join(25077564..25077601,25077773..25077877, 25078250..25078409,25078501..25078607,25079234..25079365, 25079498..25079654,25080521..25080892) /locus_tag="TCM_029941" /product="LisH and RanBPM domains containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g07570.3" /inference="similar to AA sequence:ricco:29917.m001938" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16819t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16819t1" mRNA join(25077579..25077601,25077773..25077877, 25078250..25078409,25078504..25078607,25079234..25079365, 25079498..25079654,25080521..25080968) /locus_tag="TCM_029941" /product="LisH and RanBPM domains containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g07570.3" /inference="similar to AA sequence:Phytozome:Glyma15g07570.3" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03132t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16819t1; inference alignment:Newbler:10:TSA:cgbaL_g03132t00002" CDS join(25077824..25077877,25078250..25078409, 25078501..25078607,25079234..25079365,25079498..25079654, 25080521..25080642) /locus_tag="TCM_029941" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29917.m001938" /codon_start=1 /product="LisH and RanBPM domains containing protein isoform 1" /protein_id="EOY28344.1" /db_xref="TAIR:AT1G61150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GZ85" /translation="MPPFWIVIRQLVEIEEQMATSKKVITREEWEKRLNDVKIRKEDM NKLVMNFLVTEGYVEAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVN DLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELER TVALLAFEDVSNCPVGELMDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQ NQLDEKATYPRINDLSNATLEDPTV" CDS join(25077824..25077877,25078250..25078409, 25078504..25078607,25079234..25079365,25079498..25079654, 25080521..25080642) /locus_tag="TCM_029941" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="LisH and RanBPM domains containing protein isoform 2" /protein_id="EOY28345.1" /db_xref="Phytozome:Glyma15g07570.3" /db_xref="TAIR:AT1G61150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GZ85" /translation="MPPFWIVIRQLVEIEEQMATSKKVITREEWEKRLNDVKIRKEDM NKLVMNFLVTEGYVEAAEKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVND LNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERT VALLAFEDVSNCPVGELMDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQN QLDEKATYPRINDLSNATLEDPTV" gene complement(25081145..25083822) /locus_tag="TCM_029942" /note="dbxref CacaoGD:Thecc1EG029942" mRNA complement(join(25081145..25081611,25083626..25083822)) /locus_tag="TCM_029942" /product="Glucose-fructose oxidoreductase domain-containing protein 2, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g31730.1" /inference="similar to AA sequence:Phytozome:Glyma15g07560.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g13400t00001" CDS complement(join(25081273..25081611,25083626..25083652)) /locus_tag="TCM_029942" /codon_start=1 /product="Glucose-fructose oxidoreductase domain-containing protein 2, putative" /protein_id="EOY28346.1" /db_xref="Phytozome:Glyma15g07560.1" /translation="MVSSVGSVKPKGSLSFASNKRKNERLGAYMDFMGRLEWVNSYGK KQCRSLFWRVKAALKKAVKSRSKQQFKFHYDPSSYALNFDDGCCHSGAGANTIEPARF PDCSECKNIVWVYVLWVKS" gene 25085288..25086889 /locus_tag="TCM_029943" /note="dbxref CacaoGD:Thecc1EG029943" mRNA 25085288..25086889 /locus_tag="TCM_029943" /product="Galactose oxidase/kelch repeat superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29917.m001940" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007989t1" /inference="similar to AA sequence:ricco:29917.m001940" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.17 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7512t1" CDS 25085614..25086738 /locus_tag="TCM_029943" /note="dbxref ricco:29917.m001940; paralog of Thecc1EG007989t1" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein, putative" /protein_id="EOY28347.1" /translation="MGSLPSPPQPTTPPPSPGFNPSRYRVIVAFCPKEAGPNANFFNC IQYYNPSNNTWSHVSLIPDLLENHVLKGFAMVSLGESIYIIGGTLWHKGRPQSSSDQS DEFVDVGVEVSPLVLRYNVRSDQWSKCAPLGIPRFDFAYAVGDNKIYVAGGKSNWDSA RGISSAEVYDPALDEWTPLPSMSTLRYKCVGVTWQGKIYVVGGFAERGDSDLNMLTFS PQRSSAEVFDTRVGRWDLVAGMWQLDVPPNQIVSVDGKLFSSGDCLKPWKGHIEMYDG KLNMWDEVDGSCFQISTSAGTNDEHWPPMERLYLTMAPIGTQLYFLAGYRMAGESSRT LSTVYIFDTSATVDAWRSLAPTEEEGEKELCSHCCVVQLY" gene 25090070..25094178 /locus_tag="TCM_029945" /note="dbxref CacaoGD:Thecc1EG029945" mRNA join(25090070..25090622,25091523..25091598, 25092217..25092326,25093359..25093511,25093610..25093678, 25093795..25094178) /locus_tag="TCM_029945" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g31750.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14979t00001" mobile_element complement(25090241..25090284) /note="source:CACAO_Mariner_E69_scaffold_2 4233 4275" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 25090262..25090348 /note="source:CACAO_M_S_E32591_F276_scaffold_4 326 416" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(25090353..25090622,25091523..25091598, 25092217..25092326,25093359..25093511,25093610..25093678, 25093795..25094004) /locus_tag="TCM_029945" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28348.1" /translation="MGQEERYFYSWPPVGAPLNVQREDHWRHFDNSVNAVSFGFVATA ILISMFLVMAIFERFLRPNSSHGGRNHGDLESQLGFNGKLSHPSPKAMSHLRSEGSAE VDWLVPDQRVQQIDGTPDFVLKDPCLHPGILRHNVPGGALSSSCWGTLKLMTIYTSGV SVLMPGDEIPTFIAHPAPVPCHPERVLPHHQRNSSANPASNSSEVFYETSKTIQSGSE LPFLSFSSIVTLDPDDGHGLAIEWIILHVKNLRYKIVVKYGRKFQGQFVTDEMENNIK NSKFEPPFSTMPLKYMTVI" gene complement(25095556..25097159) /locus_tag="TCM_029946" /note="dbxref CacaoGD:Thecc1EG029946" mRNA complement(25095556..25097159) /locus_tag="TCM_029946" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04550.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04550.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7574t1" CDS complement(25096021..25096887) /locus_tag="TCM_029946" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28349.1" /db_xref="Phytozome:POPTR_0011s04550.1" /db_xref="TAIR:AT1G11125.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H247" /translation="MGCCVSTNRGEPREKEAHSFHQKPSLESRAPPPSAEEETVKEVL SETPKPKAHIFIPQEEENKKAQIEKPAFVKIQEKESLNFDNKTEPKSPVIEESASEDV SEICSVSVSESVSTITDRRDEEEVRQQKIFRSPARCGSRNRVVGRSPTRKLDQSPGRR HGVANGGPSVRLVQSRETPVRRGLRPDPSRKDPGESSGRRSRSPAVNRSVMGRSPSGR RTNHSPGRVRGDAGESGNSKKVEQHQHHHGTTTTTMEGKWPSSNNNGPTTSAPNESLE NPLVSLECFIFL" mobile_element 25097773..25097837 /note="source:CACAO_M_E22886_F96_scaffold_3 8588 8641" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25098448..25099261 /note="source:CACAO_Again_on_S_E199_scaffold_6 3 830" /mobile_element_type="transposon:TIR/hAT" gene 25099980..25103444 /locus_tag="TCM_029947" /note="dbxref CacaoGD:Thecc1EG029947" mRNA join(25099980..25100152,25103141..25103444) /locus_tag="TCM_029947" /product="Pre T-cell antigen receptor alpha" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s07710.1" /inference="similar to AA sequence:TAIR:AT2G31490.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g13046t00001" CDS join(25099985..25100152,25103141..25103188) /locus_tag="TCM_029947" /codon_start=1 /product="Pre T-cell antigen receptor alpha" /protein_id="EOY28350.1" /db_xref="TAIR:AT2G31490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SIQ8" /translation="MGGGMEANKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAI PVLVYKGIVREFHMQDEDAGRPYRKFL" gene complement(25104037..25107087) /locus_tag="TCM_029948" /note="dbxref CacaoGD:Thecc1EG029948" mRNA complement(join(25104037..25106669,25106843..25107087)) /locus_tag="TCM_029948" /product="Pentatricopeptide repeat-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s37250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040523t1" /inference="similar to AA sequence:ricco:29929.m004512" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7586t1" mRNA complement(join(25104342..25106229,25106351..25106526)) /locus_tag="TCM_029948" /product="Pentatricopeptide repeat-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s37250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040523t1" /inference="similar to AA sequence:ricco:29929.m004512" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc618t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7586t1" CDS complement(25104713..25106422) /locus_tag="TCM_029948" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29929.m004512; paralog of Thecc1EG040523t1" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative isoform 1" /protein_id="EOY28351.1" /db_xref="TAIR:AT3G02650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RM09" /translation="MWRSMAGRSRQVVARIFCAANINQVLSETQKHYHYLPKTLLSQT PRFLSNFSANPSDDSSRGFAENGDSQLDGFAPAIETNAVEVPSFEGSVGDETQMDSSV SGDDRNDIEEDIQVYEIDGNKLENVLSLLQSRVDGSLESSLDVMALDLNEDFVVKVLQ TPFISGENLIRFFKWVMKKPGCKVTTSVVDSLVKGICSDLRKKDAYDLWDLVKDIGDK ENGVLTVNVLNELIALFSKLGKGKAAMEVFNKFGDFGCVPNIVTYYFTIEALCRRSIY DWAWSVCEKMLDGESLPDGEQVGKIISWFCRGGKAENAHTVYLLAKEKNKQLPRSSVN FLISSLCKKDETVNLALEMLDGFSGEARKYAIKPFSSVVRGLCRMRNLDEAKTLLLKM IADGPPPGNAVFNSVVNGYSKAGDMDKAKEMIKLMEDRGLKPDVYTYTVVMSGYANGG QMDEACEVLSEAKKKHMKLSPVTYHTLIRGYCKIEEFDKALKLLAEMKDFGVQPNVDE YNKLIQSLCLKALDWQTAEKLLDEMKENGLYLNGITQGLIKAVKELEAEEVDSREATT TEV" CDS complement(25104713..25106131) /locus_tag="TCM_029948" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29929.m004512; paralog of Thecc1EG040523t1" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative isoform 2" /protein_id="EOY28352.1" /db_xref="TAIR:AT3G02650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RM09" /translation="MDSSVSGDDRNDIEEDIQVYEIDGNKLENVLSLLQSRVDGSLES SLDVMALDLNEDFVVKVLQTPFISGENLIRFFKWVMKKPGCKVTTSVVDSLVKGICSD LRKKDAYDLWDLVKDIGDKENGVLTVNVLNELIALFSKLGKGKAAMEVFNKFGDFGCV PNIVTYYFTIEALCRRSIYDWAWSVCEKMLDGESLPDGEQVGKIISWFCRGGKAENAH TVYLLAKEKNKQLPRSSVNFLISSLCKKDETVNLALEMLDGFSGEARKYAIKPFSSVV RGLCRMRNLDEAKTLLLKMIADGPPPGNAVFNSVVNGYSKAGDMDKAKEMIKLMEDRG LKPDVYTYTVVMSGYANGGQMDEACEVLSEAKKKHMKLSPVTYHTLIRGYCKIEEFDK ALKLLAEMKDFGVQPNVDEYNKLIQSLCLKALDWQTAEKLLDEMKENGLYLNGITQGL IKAVKELEAEEVDSREATTTEV" mobile_element 25106683..25107155 /note="source:scaffold_5_CACTA_0614 1948 2436" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25106889..25107396 /note="source:CACAO_Again_on_S_E199_scaffold_6 318 793" /mobile_element_type="transposon:TIR/hAT" gene 25107232..25117188 /locus_tag="TCM_029949" /note="dbxref CacaoGD:Thecc1EG029949" mRNA join(25107232..25107486,25109632..25109772, 25110300..25110429,25110519..25110590,25111017..25111082, 25111216..25111287,25111381..25111452,25111529..25111600, 25111717..25111782,25111896..25111961,25112124..25112452, 25112558..25112973,25113453..25113724,25114001..25114139, 25114745..25114881,25114981..25115137,25116400..25117188) /locus_tag="TCM_029949" /product="STRUBBELIG-receptor family 3, putative isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007983t4" /inference="similar to AA sequence:Phytozome:POPTR_0004s03720.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7588t3" mobile_element 25107482..25108003 /note="source:CACAO_Again_on_S_E79_scaffold_2 1 534" /mobile_element_type="transposon:TIR/hAT" mobile_element 25107999..25108089 /note="source:CACAO_Helitron_SS_E7_scaffold_1 654 745" /mobile_element_type="transposon:Helitron" mobile_element complement(25108004..25108106) /note="source:CACAO_Helitron_S_E47_scaffold_7 88 182" /mobile_element_type="transposon:Helitron" mRNA join(25109403..25109772,25110300..25110429, 25110519..25110590,25111017..25111082,25111216..25111287, 25111381..25111452,25111529..25111600,25111717..25111782, 25111896..25111961,25112124..25112452,25112558..25112973, 25113453..25113724,25114001..25114137,25116459..25116674, 25116782..25116884) /locus_tag="TCM_029949" /product="STRUBBELIG-receptor family 3, putative isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007983t4" /inference="similar to AA sequence:Phytozome:POPTR_0004s03720.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc833t5_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7588t3" CDS join(25109682..25109772,25110300..25110429, 25110519..25110590,25111017..25111082,25111216..25111287, 25111381..25111452,25111529..25111600,25111717..25111782, 25111896..25111961,25112124..25112452,25112558..25112973, 25113453..25113724,25114001..25114137,25116459..25116475) /locus_tag="TCM_029949" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG007983t4" /codon_start=1 /product="STRUBBELIG-receptor family 3, putative isoform 2" /protein_id="EOY28354.1" /db_xref="Phytozome:POPTR_0004s03720.1" /db_xref="TAIR:AT1G11130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H246" /translation="MGFVTWGMMCVGLVLFLTVPFSAGTTDPRDVSAINSFYTSLGSP PLLGWIPVGGDPCGEEWQGVSCVFSNITELRLSGMNLGGVLDEGIGGFESLIKLDLSH NQIGGSIPSNLPITMRNFYLSGNQFNGSIPATLSTLTQLTELYLDDNHLSEAIPDSFQ QLKSLIDLDLSGNNLSGQLPPSFGNLSSLTTLHLQNNRISGLLDVLQDLPLSDLNVEN NILSGPIPAKLLNIPNFRKDGNPFNTTILPSPPLALPPYIAWAPSPLEGSRGPAGAPS SVELPQWAKARKFWTNDRVIWIAVAGLIALVVLVVFLLFVWRCCKRRQVNRNSDRHTS EKLNQINKSEKVAKEAVMKPVDGYGLESGGMRISSKLQDEQVADVIRVPSSSRTQKNH ETNKGGVDVMPVSLRPPLPPPLFPSAEEVSVSPIMPAGVNGGVRSSRGQDSSSMSAFT VASLQQYTNSFAEENFIGEDMLGSVYRAELPDGKILAIKKLDTRASRWKNDAEFLELV STIYKLRHPNILELVGYCNEHGQRLLVYEYCRNGTLYDALHVDDGIRKKLSWNARVRV ALGVARALQFLHEVCQPPIVHKNIRSANILLDDKLAVRVSECGLAPLVSSGSLSVRGE S" CDS join(25109682..25109772,25110300..25110429, 25110519..25110590,25111017..25111082,25111216..25111287, 25111381..25111452,25111529..25111600,25111717..25111782, 25111896..25111961,25112124..25112452,25112558..25112973, 25113453..25113724,25114001..25114139,25114745..25114881, 25114981..25115137,25116400..25116462) /locus_tag="TCM_029949" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG007983t4" /codon_start=1 /product="STRUBBELIG-receptor family 3, putative isoform 1" /protein_id="EOY28353.1" /db_xref="Phytozome:POPTR_0004s03720.1" /db_xref="TAIR:AT4G03390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H246" /translation="MGFVTWGMMCVGLVLFLTVPFSAGTTDPRDVSAINSFYTSLGSP PLLGWIPVGGDPCGEEWQGVSCVFSNITELRLSGMNLGGVLDEGIGGFESLIKLDLSH NQIGGSIPSNLPITMRNFYLSGNQFNGSIPATLSTLTQLTELYLDDNHLSEAIPDSFQ QLKSLIDLDLSGNNLSGQLPPSFGNLSSLTTLHLQNNRISGLLDVLQDLPLSDLNVEN NILSGPIPAKLLNIPNFRKDGNPFNTTILPSPPLALPPYIAWAPSPLEGSRGPAGAPS SVELPQWAKARKFWTNDRVIWIAVAGLIALVVLVVFLLFVWRCCKRRQVNRNSDRHTS EKLNQINKSEKVAKEAVMKPVDGYGLESGGMRISSKLQDEQVADVIRVPSSSRTQKNH ETNKGGVDVMPVSLRPPLPPPLFPSAEEVSVSPIMPAGVNGGVRSSRGQDSSSMSAFT VASLQQYTNSFAEENFIGEDMLGSVYRAELPDGKILAIKKLDTRASRWKNDAEFLELV STIYKLRHPNILELVGYCNEHGQRLLVYEYCRNGTLYDALHVDDGIRKKLSWNARVRV ALGVARALQFLHEVCQPPIVHKNIRSANILLDDKLAVRVSECGLAPLVSSGSLSEFSG SLFVSYGYAAPEIESGSYTCQSDVYSLGVVMLELLTGRKSFDRSRPLGEQFLVRWAIP QLHDIDALARMVDIALKGVYPVKSLSRFADIISRCVQWEPGFRPPISEIVQDLLHMI" mobile_element complement(25115813..25115892) /note="source:scaffold_2_CACTA_0239 8858 8934" /mobile_element_type="transposon:TIR/CACTA" gene 25118332..25126410 /locus_tag="TCM_029950" /note="dbxref CacaoGD:Thecc1EG029950" mRNA join(25118332..25118378,25118591..25119205, 25119677..25119807,25119987..25120104,25120353..25120579, 25120665..25120767,25121057..25121127,25121626..25121700, 25121783..25121926,25122064..25122226,25122438..25122965, 25123130..25123186,25123274..25123410,25123612..25124301, 25124645..25124719,25124845..25124957,25125217..25125514, 25125761..25126410) /locus_tag="TCM_029950" /product="Katanin P80 subunit, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04530.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04530.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:PASA:2:TSA:puevd3b028968t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7622t1" mRNA join(25118332..25118378,25118591..25119205, 25119677..25119807,25119987..25120104,25120353..25120579, 25120665..25120767,25121057..25121127,25121626..25121700, 25121783..25121926,25122064..25122226,25122438..25122965, 25123130..25123186,25123274..25123410,25123612..25124301, 25124645..25124719,25124845..25124957,25125217..25125333, 25125446..25125514,25125761..25126410) /locus_tag="TCM_029950" /product="Katanin P80 subunit, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04530.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04530.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7622t1" mRNA join(25118730..25118918,25119045..25119205, 25119677..25119807,25119987..25120104,25120353..25120579, 25120665..25120767,25121057..25121127,25121626..25121700, 25121783..25121926,25122064..25122226,25122438..25122965, 25123274..25123410,25123612..25124301,25124645..25124717, 25125765..25126354) /locus_tag="TCM_029950" /product="Transducin/WD40 repeat-like superfamily protein isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04530.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04530.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc650t2_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7622t1" mRNA join(25118730..25118875,25119046..25119205, 25119677..25119807,25119987..25120104,25120353..25120579, 25120665..25120767,25121057..25121127,25121626..25121700, 25121783..25121926,25122064..25122226,25122438..25122965, 25123130..25123186,25123274..25123410,25123612..25124301, 25124645..25124717,25125765..25126354) /locus_tag="TCM_029950" /product="Transducin/WD40 repeat-like superfamily protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04530.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04530.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc642t5_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7622t1" mRNA join(25118730..25118875,25119046..25119205, 25119677..25119807,25119987..25120104,25120348..25120579, 25120665..25120767,25121057..25121127,25121626..25121700, 25121783..25121926,25122064..25122226,25122438..25122965, 25123130..25123186,25123274..25123410,25123612..25124301, 25124645..>25124718) /locus_tag="TCM_029950" /product="Transducin/WD40 repeat-like superfamily protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04530.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04530.1" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc642t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7622t1" mRNA join(25118970..25119205,25119677..25119807, 25119987..25120104,25120353..25120579,25120665..25120767, 25121057..25121127,25121626..25121700,25121783..25121926, 25122064..25122226,25122438..25122965,25123274..25123410, 25123612..25124301,25124645..25124744,25124845..25124957, 25125217..25125334,25125446..25125514,25125761..25126281) /locus_tag="TCM_029950" /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04530.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04530.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7622t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7622t1" mRNA join(25118970..25119205,25119677..25119807, 25119987..25120104,25120353..25120579,25120665..25120767, 25121057..25121127,25121626..25121700,25121783..25121926, 25122064..25122226,25122438..25122965,25123274..25123410, 25123612..25124301,25124645..25124722,25124845..25124957, 25125217..25125334,25125446..25125514,25125761..25126281) /locus_tag="TCM_029950" /product="Transducin/WD40 repeat-like superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04530.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04530.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7622t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7622t1" CDS join(25119181..25119205,25119677..25119807, 25119987..25120104,25120353..25120579,25120665..25120767, 25121057..25121127,25121626..25121700,25121783..25121926, 25122064..25122226,25122438..25122965,25123130..25123186, 25123274..25123410,25123612..25124301,25124645..25124717, 25125765..25125862) /locus_tag="TCM_029950" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 5" /protein_id="EOY28359.1" /db_xref="Phytozome:POPTR_0011s04530.1" /translation="MAKRGYKLQEFVAHTANVNCLSMGKKTRRLLITGGDDHKVNVWA IGKPTSLMSLCGHTSPVESLAFDSAEVLVLAGASTGVIKLWDLEETKMVRGLTGHRSN CTAMEFHPFGEFFASGSMDTNLKIWDIRKKGCIHTYKGHTRGISTIRFTPDGRWVVSG GFDNVVKVWDLTAGKLLHDFKFHEGHIHSIEFHPLEFLLATGSADRTVKFWDLETFEL IGSSRPEATGVRSITFHPDGRTLFCGLDDDLKVYSWEPVVCHDSVDMGWSTLGDLCIN EGKLLGCSFYRNSVGVWVADVAHIEPYGRNDLTEKKFNLEGSYSLEKAGCGMRSTLGS RPMSPDYDTKEIKNIYVDTAGSNPPITSHKAGSLNSPKVVFPFDASEISNLAAEKQSP GTGVNAKSNGQSGNKSFITPSAVPQDSPLGKDSINSGKESITFSRTKPGMLLRPAHVR RPSVNKFEVEKLSAAVESGTLSNTKSALDSSMDLNSQTRLVSEDRARKSCDEKDSNIK SVTEKSEKMLSAKTPPNQETCNESLNCNKDSNSVKFVNGVAVVPGRTRTLVEKFERRE RLNSSGDPTTNSTLPVVPETDSTPAIMKGGTQISEAQSISANDGKSAESLISRTKSTS GSEGSITGSQIPRRESNPTSDGIITGDQISRRELTVTPDRIITGNQISRKESTITPDR IIPGNQISRREPNSSPSGGIFTGSQISRRESTSASDGIIAGNQISRRESTSVSDGIIP RNSISRREATYANDRNGPSGSITENQISRRGLSSANDGNVTIIESQISKGESISANDG NITESLMQTHDSFLSTLRSRLTKLQVVRHFWEKNDIKGAIGALRKLPDHWWCHSKMCR GIEFSSSRMMMNAAILNPSAAEA" CDS join(25119181..25119205,25119677..25119807, 25119987..25120104,25120353..25120579,25120665..25120767, 25121057..25121127,25121626..25121700,25121783..25121926, 25122064..25122226,25122438..25122965,25123274..25123410, 25123612..25124301,25124645..25124722,25124845..25124957, 25125217..25125334,25125446..25125514,25125761..25125862) /locus_tag="TCM_029950" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 4" /protein_id="EOY28358.1" /db_xref="Phytozome:POPTR_0011s04530.1" /db_xref="TAIR:AT1G61210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S5Z3" /translation="MAKRGYKLQEFVAHTANVNCLSMGKKTRRLLITGGDDHKVNVWA IGKPTSLMSLCGHTSPVESLAFDSAEVLVLAGASTGVIKLWDLEETKMVRGLTGHRSN CTAMEFHPFGEFFASGSMDTNLKIWDIRKKGCIHTYKGHTRGISTIRFTPDGRWVVSG GFDNVVKVWDLTAGKLLHDFKFHEGHIHSIEFHPLEFLLATGSADRTVKFWDLETFEL IGSSRPEATGVRSITFHPDGRTLFCGLDDDLKVYSWEPVVCHDSVDMGWSTLGDLCIN EGKLLGCSFYRNSVGVWVADVAHIEPYGRNDLTEKKFNLEGSYSLEKAGCGMRSTLGS RPMSPDYDTKEIKNIYVDTAGSNPPITSHKAGSLNSPKVVFPFDASEISNLAAEKQSP GTGVNAKSNGQSGNKSFITPSAVPQDSPLGKDSINSGKESITFSRTKPGMLLRPAHVR RPSVNKFEVEKLSAAVESGTLSNTKSALDSSMDLNSQTRLVSEDRARKSCDEKDSNIK SVTEKSEKMLSAKTPPNQETLAVVPGRTRTLVEKFERRERLNSSGDPTTNSTLPVVPE TDSTPAIMKGGTQISEAQSISANDGKSAESLISRTKSTSGSEGSITGSQIPRRESNPT SDGIITGDQISRRELTVTPDRIITGNQISRKESTITPDRIIPGNQISRREPNSSPSGG IFTGSQISRRESTSASDGIIAGNQISRRESTSVSDGIIPRNSISRREATYANDRNGPS GSITENQISRRGLSSANDGNVTIIESQISKGESISANDGNITESLMQTHDSFLSTLRS RLTKLQVVRHFWEKNDIKGAIGALRKLPDHSVVQADVISVLMEKMEILTLDLFSGLIP VLMGLLDSKMERHVNVSLEMLLKLVAVFGPMIRSTVSARRGVGVDLHAEQRAGMLQSM FYAAAKDSETSSTTCKERWCHSKMCRGIEFSSSRMMMNAAILNPSAAEA" CDS join(25119181..25119205,25119677..25119807, 25119987..25120104,25120353..25120579,25120665..25120767, 25121057..25121127,25121626..25121700,25121783..25121926, 25122064..25122226,25122438..25122965,25123274..25123410, 25123612..25124301,25124645..25124717,25125765..25125862) /locus_tag="TCM_029950" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 7" /protein_id="EOY28361.1" /db_xref="Phytozome:POPTR_0011s04530.1" /translation="MAKRGYKLQEFVAHTANVNCLSMGKKTRRLLITGGDDHKVNVWA IGKPTSLMSLCGHTSPVESLAFDSAEVLVLAGASTGVIKLWDLEETKMVRGLTGHRSN CTAMEFHPFGEFFASGSMDTNLKIWDIRKKGCIHTYKGHTRGISTIRFTPDGRWVVSG GFDNVVKVWDLTAGKLLHDFKFHEGHIHSIEFHPLEFLLATGSADRTVKFWDLETFEL IGSSRPEATGVRSITFHPDGRTLFCGLDDDLKVYSWEPVVCHDSVDMGWSTLGDLCIN EGKLLGCSFYRNSVGVWVADVAHIEPYGRNDLTEKKFNLEGSYSLEKAGCGMRSTLGS RPMSPDYDTKEIKNIYVDTAGSNPPITSHKAGSLNSPKVVFPFDASEISNLAAEKQSP GTGVNAKSNGQSGNKSFITPSAVPQDSPLGKDSINSGKESITFSRTKPGMLLRPAHVR RPSVNKFEVEKLSAAVESGTLSNTKSALDSSMDLNSQTRLVSEDRARKSCDEKDSNIK SVTEKSEKMLSAKTPPNQETLAVVPGRTRTLVEKFERRERLNSSGDPTTNSTLPVVPE TDSTPAIMKGGTQISEAQSISANDGKSAESLISRTKSTSGSEGSITGSQIPRRESNPT SDGIITGDQISRRELTVTPDRIITGNQISRKESTITPDRIIPGNQISRREPNSSPSGG IFTGSQISRRESTSASDGIIAGNQISRRESTSVSDGIIPRNSISRREATYANDRNGPS GSITENQISRRGLSSANDGNVTIIESQISKGESISANDGNITESLMQTHDSFLSTLRS RLTKLQVVRHFWEKNDIKGAIGALRKLPDHWWCHSKMCRGIEFSSSRMMMNAAILNPS AAEA" CDS join(25119181..25119205,25119677..25119807, 25119987..25120104,25120353..25120579,25120665..25120767, 25121057..25121127,25121626..25121700,25121783..25121926, 25122064..25122226,25122438..25122965,25123130..25123186, 25123274..25123410,25123612..25124301,25124645..25124719, 25124845..25124957,25125217..25125333,25125446..25125514, 25125761..25125818) /locus_tag="TCM_029950" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Katanin P80 subunit, putative isoform 1" /protein_id="EOY28355.1" /db_xref="Phytozome:POPTR_0011s04530.1" /db_xref="TAIR:AT1G61210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S5Z3" /translation="MAKRGYKLQEFVAHTANVNCLSMGKKTRRLLITGGDDHKVNVWA IGKPTSLMSLCGHTSPVESLAFDSAEVLVLAGASTGVIKLWDLEETKMVRGLTGHRSN CTAMEFHPFGEFFASGSMDTNLKIWDIRKKGCIHTYKGHTRGISTIRFTPDGRWVVSG GFDNVVKVWDLTAGKLLHDFKFHEGHIHSIEFHPLEFLLATGSADRTVKFWDLETFEL IGSSRPEATGVRSITFHPDGRTLFCGLDDDLKVYSWEPVVCHDSVDMGWSTLGDLCIN EGKLLGCSFYRNSVGVWVADVAHIEPYGRNDLTEKKFNLEGSYSLEKAGCGMRSTLGS RPMSPDYDTKEIKNIYVDTAGSNPPITSHKAGSLNSPKVVFPFDASEISNLAAEKQSP GTGVNAKSNGQSGNKSFITPSAVPQDSPLGKDSINSGKESITFSRTKPGMLLRPAHVR RPSVNKFEVEKLSAAVESGTLSNTKSALDSSMDLNSQTRLVSEDRARKSCDEKDSNIK SVTEKSEKMLSAKTPPNQETCNESLNCNKDSNSVKFVNGVAVVPGRTRTLVEKFERRE RLNSSGDPTTNSTLPVVPETDSTPAIMKGGTQISEAQSISANDGKSAESLISRTKSTS GSEGSITGSQIPRRESNPTSDGIITGDQISRRELTVTPDRIITGNQISRKESTITPDR IIPGNQISRREPNSSPSGGIFTGSQISRRESTSASDGIIAGNQISRRESTSVSDGIIP RNSISRREATYANDRNGPSGSITENQISRRGLSSANDGNVTIIESQISKGESISANDG NITESLMQTHDSFLSTLRSRLTKLQVVRHFWEKNDIKGAIGALRKLPDHSVQADVISV LMEKMEILTLDLFSGLIPVLMGLLDSKMERHVNVSLEMLLKLVAVFGPMIRSTVSARR GVGVDLHAEQRRECCNQCFMQLQKIQKLLPPLVRRGGAIARCAEELNLVLQE" CDS join(25119181..25119205,25119677..25119807, 25119987..25120104,25120353..25120579,25120665..25120767, 25121057..25121127,25121626..25121700,25121783..25121926, 25122064..25122226,25122438..25122965,25123130..25123186, 25123274..25123410,25123612..25124301,25124645..25124719, 25124845..25124957,25125217..25125343) /locus_tag="TCM_029950" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Katanin P80 subunit, putative isoform 3" /protein_id="EOY28357.1" /db_xref="Phytozome:POPTR_0011s04530.1" /db_xref="TAIR:AT1G61210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S5Z3" /translation="MAKRGYKLQEFVAHTANVNCLSMGKKTRRLLITGGDDHKVNVWA IGKPTSLMSLCGHTSPVESLAFDSAEVLVLAGASTGVIKLWDLEETKMVRGLTGHRSN CTAMEFHPFGEFFASGSMDTNLKIWDIRKKGCIHTYKGHTRGISTIRFTPDGRWVVSG GFDNVVKVWDLTAGKLLHDFKFHEGHIHSIEFHPLEFLLATGSADRTVKFWDLETFEL IGSSRPEATGVRSITFHPDGRTLFCGLDDDLKVYSWEPVVCHDSVDMGWSTLGDLCIN EGKLLGCSFYRNSVGVWVADVAHIEPYGRNDLTEKKFNLEGSYSLEKAGCGMRSTLGS RPMSPDYDTKEIKNIYVDTAGSNPPITSHKAGSLNSPKVVFPFDASEISNLAAEKQSP GTGVNAKSNGQSGNKSFITPSAVPQDSPLGKDSINSGKESITFSRTKPGMLLRPAHVR RPSVNKFEVEKLSAAVESGTLSNTKSALDSSMDLNSQTRLVSEDRARKSCDEKDSNIK SVTEKSEKMLSAKTPPNQETCNESLNCNKDSNSVKFVNGVAVVPGRTRTLVEKFERRE RLNSSGDPTTNSTLPVVPETDSTPAIMKGGTQISEAQSISANDGKSAESLISRTKSTS GSEGSITGSQIPRRESNPTSDGIITGDQISRRELTVTPDRIITGNQISRKESTITPDR IIPGNQISRREPNSSPSGGIFTGSQISRRESTSASDGIIAGNQISRRESTSVSDGIIP RNSISRREATYANDRNGPSGSITENQISRRGLSSANDGNVTIIESQISKGESISANDG NITESLMQTHDSFLSTLRSRLTKLQVVRHFWEKNDIKGAIGALRKLPDHSVQADVISV LMEKMEILTLDLFSGLIPVLMGLLDSKMERHVNVSLEMLLKLVAVFGPMIRSTVSARR GVGVDLHAEQRCY" CDS join(25119181..25119205,25119677..25119807, 25119987..25120104,25120353..25120579,25120665..25120767, 25121057..25121127,25121626..25121700,25121783..25121926, 25122064..25122226,25122438..25122965,25123274..25123410, 25123612..25124301,25124645..25124744,25124845..25124945) /locus_tag="TCM_029950" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /protein_id="EOY28356.1" /db_xref="Phytozome:POPTR_0011s04530.1" /translation="MAKRGYKLQEFVAHTANVNCLSMGKKTRRLLITGGDDHKVNVWA IGKPTSLMSLCGHTSPVESLAFDSAEVLVLAGASTGVIKLWDLEETKMVRGLTGHRSN CTAMEFHPFGEFFASGSMDTNLKIWDIRKKGCIHTYKGHTRGISTIRFTPDGRWVVSG GFDNVVKVWDLTAGKLLHDFKFHEGHIHSIEFHPLEFLLATGSADRTVKFWDLETFEL IGSSRPEATGVRSITFHPDGRTLFCGLDDDLKVYSWEPVVCHDSVDMGWSTLGDLCIN EGKLLGCSFYRNSVGVWVADVAHIEPYGRNDLTEKKFNLEGSYSLEKAGCGMRSTLGS RPMSPDYDTKEIKNIYVDTAGSNPPITSHKAGSLNSPKVVFPFDASEISNLAAEKQSP GTGVNAKSNGQSGNKSFITPSAVPQDSPLGKDSINSGKESITFSRTKPGMLLRPAHVR RPSVNKFEVEKLSAAVESGTLSNTKSALDSSMDLNSQTRLVSEDRARKSCDEKDSNIK SVTEKSEKMLSAKTPPNQETLAVVPGRTRTLVEKFERRERLNSSGDPTTNSTLPVVPE TDSTPAIMKGGTQISEAQSISANDGKSAESLISRTKSTSGSEGSITGSQIPRRESNPT SDGIITGDQISRRELTVTPDRIITGNQISRKESTITPDRIIPGNQISRREPNSSPSGG IFTGSQISRRESTSASDGIIAGNQISRRESTSVSDGIIPRNSISRREATYANDRNGPS GSITENQISRRGLSSANDGNVTIIESQISKGESISANDGNITESLMQTHDSFLSTLRS RLTKLQVVRHFWEKNDIKGAIGALRKLPDHSVGIYGKISCASRCNQCSHGKNGDSHLR SVFWPNSCAYGLIR" CDS join(25120394..25120579,25120665..25120767, 25121057..25121127,25121626..25121700,25121783..25121926, 25122064..25122226,25122438..25122965,25123130..25123186, 25123274..25123410,25123612..25124301,25124645..>25124716) /locus_tag="TCM_029950" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 6" /protein_id="EOY28360.1" /db_xref="Phytozome:POPTR_0011s04530.1" /translation="MEFHPFGEFFASGSMDTNLKIWDIRKKGCIHTYKGHTRGISTIR FTPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIHSIEFHPLEFLLATGSADRT VKFWDLETFELIGSSRPEATGVRSITFHPDGRTLFCGLDDDLKVYSWEPVVCHDSVDM GWSTLGDLCINEGKLLGCSFYRNSVGVWVADVAHIEPYGRNDLTEKKFNLEGSYSLEK AGCGMRSTLGSRPMSPDYDTKEIKNIYVDTAGSNPPITSHKAGSLNSPKVVFPFDASE ISNLAAEKQSPGTGVNAKSNGQSGNKSFITPSAVPQDSPLGKDSINSGKESITFSRTK PGMLLRPAHVRRPSVNKFEVEKLSAAVESGTLSNTKSALDSSMDLNSQTRLVSEDRAR KSCDEKDSNIKSVTEKSEKMLSAKTPPNQETCNESLNCNKDSNSVKFVNGVAVVPGRT RTLVEKFERRERLNSSGDPTTNSTLPVVPETDSTPAIMKGGTQISEAQSISANDGKSA ESLISRTKSTSGSEGSITGSQIPRRESNPTSDGIITGDQISRRELTVTPDRIITGNQI SRKESTITPDRIIPGNQISRREPNSSPSGGIFTGSQISRRESTSASDGIIAGNQISRR ESTSVSDGIIPRNSISRREATYANDRNGPSGSITENQISRRGLSSANDGNVTIIESQI SKGESISANDGNITESLMQTHDSFLSTLRSRLTKLQVVRHFWEKNDIKGAIGALRKLP DH" mRNA join(<25120686..25120767,25121057..25121127, 25121626..25121700,25121783..25121926,25122064..25122226, 25122438..25122965,25123130..25123186,25123274..25123410, 25123612..25124301,25124645..25124719,25124845..25124957, 25125446..>25125501) /locus_tag="TCM_029950" /product="Transducin/WD40 repeat-like superfamily protein isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04530.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04530.1" /note="transcript variant 8; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc596t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7622t1" CDS join(<25120686..25120767,25121057..25121127, 25121626..25121700,25121783..25121926,25122064..25122226, 25122438..25122965,25123130..25123186,25123274..25123410, 25123612..25124301,25124645..25124719,25124845..25124957, 25125446..>25125500) /locus_tag="TCM_029950" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 8" /protein_id="EOY28362.1" /db_xref="Phytozome:POPTR_0011s04530.1" /db_xref="TAIR:AT1G61210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S5Z3" /translation="KLLHDFKFHEGHIHSIEFHPLEFLLATGSADRTVKFWDLETFEL IGSSRPEATGVRSITFHPDGRTLFCGLDDDLKVYSWEPVVCHDSVDMGWSTLGDLCIN EGKLLGCSFYRNSVGVWVADVAHIEPYGRNDLTEKKFNLEGSYSLEKAGCGMRSTLGS RPMSPDYDTKEIKNIYVDTAGSNPPITSHKAGSLNSPKVVFPFDASEISNLAAEKQSP GTGVNAKSNGQSGNKSFITPSAVPQDSPLGKDSINSGKESITFSRTKPGMLLRPAHVR RPSVNKFEVEKLSAAVESGTLSNTKSALDSSMDLNSQTRLVSEDRARKSCDEKDSNIK SVTEKSEKMLSAKTPPNQETCNESLNCNKDSNSVKFVNGVAVVPGRTRTLVEKFERRE RLNSSGDPTTNSTLPVVPETDSTPAIMKGGTQISEAQSISANDGKSAESLISRTKSTS GSEGSITGSQIPRRESNPTSDGIITGDQISRRELTVTPDRIITGNQISRKESTITPDR IIPGNQISRREPNSSPSGGIFTGSQISRRESTSASDGIIAGNQISRRESTSVSDGIIP RNSISRREATYANDRNGPSGSITENQISRRGLSSANDGNVTIIESQISKGESISANDG NITESLMQTHDSFLSTLRSRLTKLQVVRHFWEKNDIKGAIGALRKLPDHSVQADVISV LMEKMEILTLDLFSGLIPVLMGLLDSKMERRECCNQCFMQLQKIQKLL" gene 25128556..25132675 /locus_tag="TCM_029951" /note="dbxref CacaoGD:Thecc1EG029951" mRNA join(25128556..25129101,25130244..25130293, 25130390..25130467,25131035..25131647,25131803..25132675) /locus_tag="TCM_029951" /product="Bromodomain 4, putative" /inference="alignment:exonerate- protein:2:ricco:29917.m001946" /inference="similar to AA sequence:ricco:29917.m001946" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04932t00001" CDS join(25128952..25129101,25130244..25130293, 25130390..25130467,25131035..25131647,25131803..25132333) /locus_tag="TCM_029951" /note="dbxref ricco:29917.m001946" /codon_start=1 /product="Bromodomain 4, putative" /protein_id="EOY28363.1" /db_xref="TAIR:AT1G61215.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H245" /translation="MGTEMITGRWGTWEELLLGGAVLRHGTRDWNLVASELQARTISP FAFTPEVCKAKYEDLQQRYSGCKAWFEELRKQRMLELRRALEKSEDSIGSLESKLESL KAEKRDDSRIDYDSSQTVSAIPCLKSEGVEFSSKDTSKDDLSAGSFTREAQTNWSPHC QIPAAVPAEEMDMKPGESLVSEREKVSSIDKLADTFCGGQFQSIRKRRGKRKRKDCSR DAKEGSVGESEFLGPADVASASPCKETSASNSAQIARSSGIEDQSGGSSKEGIDAMMG IFSSVAENYCASVFRRRLDSQKRGRYKKMILRHMDFDTIRSRIASNSIMSVKELFRDM LLVANNAMVFYSKNTREYKSALLLRHIVTATLRQHFKEYGSKVPITTFTSSRPMHKLP AKPRSIRPGNRKLPGKAANNGNAVVGVSHANKKTANADSPPSVESLPVTKKGSSQPRK VGRGRASQKSESPMKGRKRARAR" gene 25135525..25146455 /locus_tag="TCM_029952" /note="dbxref CacaoGD:Thecc1EG029952" mRNA join(25135525..25136099,25137059..25137154, 25137255..25137362,25137598..25137633,25137869..25137979, 25138239..25138322,25138396..25138514,25138947..25139048, 25139287..25139403,25139491..25139556,25139914..25139980, 25140186..25140239,25140426..25140533,25141179..25141214, 25141823..25141912,25143560..25143667,25143783..25143842, 25144012..25144045,25144300..25144422,25144564..25144626, 25144763..25144814,25144900..25144945,25145035..25145102, 25145351..25145627,25146171..25146455) /locus_tag="TCM_029952" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene30457" /inference="similar to AA sequence:Phytozome:POPTR_0004s03700.3" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05764t00001" CDS join(25137095..25137154,25137255..25137362, 25137598..25137633,25137869..25137979,25138239..25138322, 25138396..25138514,25138947..25139048,25139287..25139403, 25139491..25139556,25139914..25139980,25140186..25140239, 25140426..25140533,25141179..25141214,25141823..25141912, 25143560..25143667,25143783..25143842,25144012..25144045, 25144300..25144422,25144564..25144626,25144763..25144814, 25144900..25144945,25145035..25145102,25145351..25145417) /locus_tag="TCM_029952" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28364.1" /db_xref="Phytozome:POPTR_0004s03700.3" /db_xref="TAIR:AT1G61240.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S9J5" /translation="MKTFESWDALVKKRNALSEGGNCGFKMKQLPFMGVICAVMLFIV YRTTNYQYHETEMESKLHPFETVKDYRLPSGKLKSLPRGIMHAHSDLELRPLWSRSSL RSKVNVTMNKNLLAMPVGIKQKENVDDIVQKFLAENFTIILFHYDGHVDGWLDLEWGD KAVHIVAHNQTKWWFAKRFLHPDVVSIYDYIFLWDEDLGVQHFDPGRYLEIVKAEGLE ISQPALDPNSTEIHHRITIRARMKKFHRRVYDLRGKTKCTSASEGPPCTGFVEGMAPV FSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRSKKVGVIDSEYIVHKGIQSLGGS GHSTMTTTIKSPGASGFDLRTEIRRQSTWELQVFKDRWNQAVEEDKSWVDPFSPTHYS HSRLPALIPEPASYNYDRNPAIDITLDKATNLKQKERELKAKEAEIRREEEVKRKEEA LARAGVFLDVRNWPPFFPIIHHDIANEIPDYLQRMQYVAFLTLLGLVLCLFWNILAVS AASIKGKGVPGAYILWYHPLYRDCRKDSAFKFGSFFIFYMIHICFCHYAMVAPPIIYH GLSLTGVLSAVYLTTDGHALIGVKTP" gene 25147582..25151075 /locus_tag="TCM_029953" /note="dbxref CacaoGD:Thecc1EG029953" mRNA join(25147582..25147743,25148109..25148216, 25148338..25148400,25148646..25148679,25148878..25149000, 25149096..25149158,25149242..25149335,25149424..25149469, 25149559..25149626,25149855..25149906,25150063..25150128, 25150247..25150351,25150868..25151075) /locus_tag="TCM_029953" /product="Secretory carrier membrane protein (SCAMP) family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g31830.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029955t2" /inference="similar to AA sequence:Phytozome:Glyma07g31090.3" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS join(25147684..25147743,25148109..25148216, 25148338..25148400,25148646..25148679,25148878..25149000, 25149096..25149158,25149242..25149335,25149424..25149469, 25149559..25149626,25149855..25149906,25150063..25150128, 25150247..25150336) /locus_tag="TCM_029953" /note="paralog of Thecc1EG029955t2" /codon_start=1 /product="Secretory carrier membrane protein (SCAMP) family protein" /protein_id="EOY28365.1" /db_xref="Phytozome:Glyma07g31090.3" /db_xref="TAIR:AT1G11180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SXA5" /translation="MAGNRDRNPFDEEEAVNPFSNPTHYSHSTLPALSPEPASYNYDR NPALDITLDKATNLKQKERELQAKEAEIRGREEVVKRKEEALARAGVFLDVKNWPPFF PIIHHDIANEIPNYLHRMQYVAFSSLLGLVLCLFWNVIAVSTASIKGKGIYIWFLAVI YFMLGVPGAYILWYRPLYRACRKDSAFKFGWFFIFYMIHICFCIYAAVAPPIIYQGLS MPGILSAMYLMNKEDALVGIFYFIGFGLFCGETLLSIWVLQRVYRYFRGTGKAAEAKH CAARGTAMAAMG" mobile_element 25148497..25148553 /note="source:CACAO_M_S_E101631_F270_scaffold_9 11889 11943" /mobile_element_type="retrotransposon:LTR/Copia" gene 25151439..25156612 /locus_tag="TCM_029955" /note="dbxref CacaoGD:Thecc1EG029955" mRNA join(25151439..25151505,25151668..25151765, 25152508..25152570,25153105..25153239,25153327..25153389, 25153775..25153808,25154172..25154294,25154545..25154607, 25154695..25154788,25155048..25155093,25155185..25155252, 25155565..25155613,25155866..25155931,25156023..25156612) /locus_tag="TCM_029955" /product="Secretory carrier 3 isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT1G11180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007982t1" /inference="similar to AA sequence:Phytozome:Glyma07g31090.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05504t00001_C2; inference alignment:Newbler:10:TSA:cgbaB_g09038t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc651t18" mRNA join(25151472..25151765,25151844..25151924, 25152508..25152570,25153105..25153239,25153327..25153389, 25153775..25153808,25154172..25154294,25154545..25154607, 25154695..25154788,25155048..25155093,25155185..25155252, 25155565..25155613,25155702..25155740,25155866..25155931, 25156023..25156589) /locus_tag="TCM_029955" /product="Secretory carrier-associated membrane protein 1 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G11180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007982t1" /inference="similar to AA sequence:Phytozome:Glyma07g31090.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09038t00001" mRNA join(25151549..25151765,25152508..25152570, 25153105..25153239,25153327..25153389,25153775..25153808, 25154172..25154294,25154545..25154607,25154695..25154788, 25155048..25155093,25155185..25155613,25155866..25155894) /locus_tag="TCM_029955" /product="Secretory carrier-associated membrane protein 1 isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT1G11180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007982t1" /inference="similar to AA sequence:Phytozome:Glyma07g31090.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc710t8; inference alignment:Newbler:10:TSA:cgbaB_g09038t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc651t18" CDS join(25151703..25151765,25151844..25151924, 25152508..25152570,25153105..25153239,25153327..25153389, 25153775..25153808,25154172..25154294,25154545..25154607, 25154695..25154788,25155048..25155093,25155185..25155252, 25155565..25155613,25155702..25155740,25155866..25155931, 25156023..25156109) /locus_tag="TCM_029955" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG007982t1" /codon_start=1 /product="Secretory carrier-associated membrane protein 1 isoform 1" /protein_id="EOY28366.1" /db_xref="Phytozome:Glyma07g31090.1" /db_xref="TAIR:AT1G61250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H5X5" /translation="MAGRYDKNPFDEEEEEVNPFAFNYGVSVAVYLKNFEILYGFGES FRNGDPAVRGKTSGQSKFGGGLFSTNNPTAPPASNSRLSPLPPEPAGFNYDREATIDI PLDTSSGGSHYQDLKRKEKELQAKEAELRRREQEVKRKEEAAARAGIVLEEKNWPPFF PIIHHDIANEIPIHLQRLQYVAFSTFLGLCLCLLWNIIAVTTAWIKGEGVRIWFLAVI YFIAGVPGAYVLWYRPLYRAFRKESALRFGWFFLFYLLHIGFCIFAAVAPPIVFRGKS LTGILPAVDLIDGHALVGQKLITCCVKWDSWIFYFVGFALFCVESVVSIWVMQQVYMY FRGSGKAAEMKREVARGAMRAAI" CDS join(25151703..25151765,25152508..25152570, 25153105..25153239,25153327..25153389,25153775..25153808, 25154172..25154294,25154545..25154607,25154695..25154788, 25155048..25155093,25155185..25155252,25155565..25155613, 25155866..25155931,25156023..25156109) /locus_tag="TCM_029955" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG007982t1" /codon_start=1 /product="Secretory carrier 3 isoform 2" /protein_id="EOY28367.1" /db_xref="Phytozome:Glyma07g31090.1" /db_xref="TAIR:AT1G61250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H5X5" /translation="MAGRYDKNPFDEEEEEVNPFADPAVRGKTSGQSKFGGGLFSTNN PTAPPASNSRLSPLPPEPAGFNYDREATIDIPLDTSSGGSHYQDLKRKEKELQAKEAE LRRREQEVKRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFSTFL GLCLCLLWNIIAVTTAWIKGEGVRIWFLAVIYFIAGVPGAYVLWYRPLYRAFRKESAL RFGWFFLFYLLHIGFCIFAAVAPPIVFRGKSLTGILPAVDLIDGHALVGIFYFVGFAL FCVESVVSIWVMQQVYMYFRGSGKAAEMKREVARGAMRAAI" CDS join(25151703..25151765,25152508..25152570, 25153105..25153239,25153327..25153389,25153775..25153808, 25154172..25154294,25154545..25154607,25154695..25154788, 25155048..25155093,25155185..25155364) /locus_tag="TCM_029955" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG007982t1" /codon_start=1 /product="Secretory carrier-associated membrane protein 1 isoform 3" /protein_id="EOY28368.1" /db_xref="Phytozome:Glyma07g31090.1" /db_xref="TAIR:AT1G61250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H5X5" /translation="MAGRYDKNPFDEEEEEVNPFADPAVRGKTSGQSKFGGGLFSTNN PTAPPASNSRLSPLPPEPAGFNYDREATIDIPLDTSSGGSHYQDLKRKEKELQAKEAE LRRREQEVKRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFSTFL GLCLCLLWNIIAVTTAWIKGEGVRIWFLAVIYFIAGVPGAYVLWYRPLYRAFRKESAL RFGWFFLFYLLHIGFCIFAAVAPPIVFRGKSLTYVRKLFLTYLWQSLLKLDKSDLHLS VFICKYISALE" mobile_element complement(25156979..25157054) /note="source:INTACT495_F229_scaffold_2-int 2851 2920" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25156990..25157090 /note="source:CACAO_M_S_E16543_F3_scaffold_2 4758 4820" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25157121..25158015) /locus_tag="TCM_029956" /note="dbxref CacaoGD:Thecc1EG029956" mRNA complement(join(25157121..25157415,25157929..25158015)) /locus_tag="TCM_029956" /product="FKBP-type peptidyl-prolyl cis-trans isomerase 5" /inference="alignment:exonerate- protein:2:ricco:29917.m001951" /inference="similar to AA sequence:Phytozome:GSVIVT01034659001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc529t2" CDS complement(join(25157153..25157415,25157929..25157935)) /locus_tag="TCM_029956" /codon_start=1 /product="FKBP-type peptidyl-prolyl cis-trans isomerase 5" /protein_id="EOY28369.1" /db_xref="Phytozome:GSVIVT01034659001" /translation="MMWFGKGWGNGIIGGGYGAGYGGPNGGYSKGGIIRPTVVCKERG PCYNKKLTCPAKCFNSFSRSGKGYGSGGGGGGCTMDCKKKCVAYC" gene complement(25158130..25169547) /locus_tag="TCM_029957" /note="dbxref CacaoGD:Thecc1EG029957" mRNA complement(join(25158130..25158189,25161179..25161921, 25162287..25162974,25163869..25164414,25168958..25169547)) /locus_tag="TCM_029957" /product="PAP-specific phosphatase HAL2-like isoform 1" /inference="alignment:exonerate- protein:2:ricco:29917.m001952" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031349t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03660.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7592t3" mRNA complement(join(25158130..25158189,25161179..25161921, 25162287..25162974,25163869..25164057,25164550..25164565)) /locus_tag="TCM_029957" /product="PAP-specific phosphatase HAL2-like isoform 2" /inference="alignment:exonerate- protein:2:ricco:29917.m001952" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031349t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04470.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b028974t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7592t3" gene complement(25158831..25160290) /locus_tag="TCM_029958" /note="dbxref CacaoGD:Thecc1EG029958" mRNA complement(join(25158831..25159828,25159937..25160290)) /locus_tag="TCM_029958" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.76 coverage" CDS complement(join(25159747..25159828,25159937..25160085)) /locus_tag="TCM_029958" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28372.1" /translation="MAAIQIQIIYTHNSSVAYPCAITSAPCDDAYNDSMVPLEGTGNC ERDMVRSGDDISMNINEAIPPYGCSRAFKEFM" mobile_element complement(25160582..25160914) /note="source:INTACT782_F329_scaffold_10-int 1 460" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(25161618..25161921,25162287..25162974, 25163869..25164057,25164550..25164556)) /locus_tag="TCM_029957" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG031349t1" /codon_start=1 /product="PAP-specific phosphatase HAL2-like isoform 2" /protein_id="EOY28371.1" /db_xref="Phytozome:POPTR_0011s04470.1" /db_xref="TAIR:AT5G54390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2CUF8" /translation="MEVMEDHRNLALSSPGPEKYSKELDVAVRAVQMACSLCQKVQES LISKANSPVHSKDDNSPVTVADWSVQATVSWILCESFGRRNVSMLAEEDVQSLSKTDA TGLLDAVVKTVNDCLTEAPLFGLKGPETPLGSSDVLEAISRCNSNRGPTGRFWALDPV DGTLGFVRGDQYAVALALIEDGEVVLGVLGCPNYPMKKEWLSYHHRYHRIISKLTPPA SESWDKGCVIYARKGSGEAWMQPLCQKNKLLAWPNSAIPVRVSSIDNPALATFCEPVE KSNSSHSFTAGLAHSVGLRKQPLRVYSMVKYAAIARGDAEIFMKFARTGYREKIWDHA AGVVIMQEAGGVVTDAGGSPLDFSKGIYLEGLDRGIIACSGAKLHEKIIRAVDASWNS SCL" CDS complement(join(25161618..25161921,25162287..25162974, 25163869..25164271)) /locus_tag="TCM_029957" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG031349t1" /codon_start=1 /product="PAP-specific phosphatase HAL2-like isoform 1" /protein_id="EOY28370.1" /db_xref="Phytozome:POPTR_0004s03660.1" /db_xref="TAIR:AT5G54390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2CUF8" /translation="MPLNCSSLVFRVPHILGQTRITNTKKLTSTTYIGNCFPKHRKET PQNKSFHIVSQLKFNQNYSSSSSSSSSVMEDHRNLALSSPGPEKYSKELDVAVRAVQM ACSLCQKVQESLISKANSPVHSKDDNSPVTVADWSVQATVSWILCESFGRRNVSMLAE EDVQSLSKTDATGLLDAVVKTVNDCLTEAPLFGLKGPETPLGSSDVLEAISRCNSNRG PTGRFWALDPVDGTLGFVRGDQYAVALALIEDGEVVLGVLGCPNYPMKKEWLSYHHRY HRIISKLTPPASESWDKGCVIYARKGSGEAWMQPLCQKNKLLAWPNSAIPVRVSSIDN PALATFCEPVEKSNSSHSFTAGLAHSVGLRKQPLRVYSMVKYAAIARGDAEIFMKFAR TGYREKIWDHAAGVVIMQEAGGVVTDAGGSPLDFSKGIYLEGLDRGIIACSGAKLHEK IIRAVDASWNSSCL" gene complement(25165499..25167977) /locus_tag="TCM_029959" /note="dbxref CacaoGD:Thecc1EG029959" mRNA complement(join(25165499..25165777,25166463..25166919, 25167884..25167977)) /locus_tag="TCM_029959" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.62 coverage" CDS complement(join(25166746..25166919,25167884..25167940)) /locus_tag="TCM_029959" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28373.1" /translation="MDRRVTTCGTLAYTMADIRGTSIHTVAETQEPRRFGLDGELRNS INGSISQIMEGHRYNPSDNSTGTSSSGLRLQP" mobile_element complement(25169870..25170048) /note="source:CACAO_PIF_E119_scaffold_3 4479 4676" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(25170073..25170774) /note="source:CACAO_on_E445_scaffold_2 22 703" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25170772..25171295 /note="source:scaffold_1_CACTA_0009 2220 2727" /mobile_element_type="transposon:TIR/CACTA" gene 25172765..25173751 /locus_tag="TCM_029960" /note="dbxref CacaoGD:Thecc1EG029960" mRNA join(25172765..25172974,25173114..25173751) /locus_tag="TCM_029960" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04460.1" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Newbler:10:TSA:cgbaB_g17190t00001" CDS join(25172959..25172974,25173114..25173538) /locus_tag="TCM_029960" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28374.1" /translation="MELSESCESHNSPNASKLKTRFPTKDLCFLLSLQSPGLCGSERK KNGRCKKGNDQQWEFFTKDCWTSDPKEGSSESGNIGGDCPFFCFYIFSKQSQGSCCCK LVLALHLCPKQGKKERHEILMILEERVGGVVACPRKDVSCLVFG" gene complement(25173608..25178707) /locus_tag="TCM_029961" /note="dbxref CacaoGD:Thecc1EG029961" mRNA complement(join(25173608..25174380,25174468..25174647, 25174798..25174912,25175030..25175193,25175283..25175348, 25175449..25175609,25175760..25175973,25176237..25176869, 25178246..25178707)) /locus_tag="TCM_029961" /product="Alternative NAD(P)H dehydrogenase 1" /inference="alignment:exonerate- protein:2:ricco:29917.m001956" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041600t1" /inference="similar to AA sequence:ricco:29917.m001956" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc295t9" CDS complement(join(25174225..25174380,25174468..25174647, 25174798..25174912,25175030..25175193,25175283..25175348, 25175449..25175609,25175760..25175973,25176237..25176818)) /locus_tag="TCM_029961" /note="dbxref ricco:29917.m001956; paralog of Thecc1EG041600t1" /codon_start=1 /product="Alternative NAD(P)H dehydrogenase 1" /protein_id="EOY28375.1" /db_xref="TAIR:AT1G07180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LML0" /translation="MALARVARSGLRRSGGAIGSSISERDIFCERVSNHKSFLPSLEK INSHGNLTYLSTIKRVNYMSFGSREISTTPHYRIPSAERLVESESEYDEPRYPGLEAT KPGEKPRVVVLGTGWAACRFLKGLDTRIYDVVCISPRNHMVFTPLLASTCVGTLEFRS VAEPVSRIQSTLATSPGSYFYLASCIGVDTDKHEVYCETESNSGLPHEPYQFKVAYDK LVIAAGAEPLTFGIKGVKENAYFLREVIHAQEIRKKLLLNLMLSENPGISEEEKKRLL HCVIIGGGPTGVEFSGELSDFIMRDVQERYSHVKDHIKVTLIEANEILSSFDVGLRQY ATNHLTKYGVHLMRGVVKEVHPKKIVLSDGSDVPYGLLVWSTGVGPSQFVKSLNLPKS PGGRIGVDEWLRVPSVEDVFALGDCAGFLEQTGKSVLPALAQVAERQGKYLVELFNSV GKQDGGKALSAKDISLGEPFVYKHLGSMASIGRYKALVDLRQSKDAKGISHAGFVSWL IWRSAYLTRVVSWRNRFYVGVNWATTLVFGRDNSRIG" gene complement(25179964..25182326) /locus_tag="TCM_029962" /note="dbxref CacaoGD:Thecc1EG029962" mRNA complement(join(25179964..25180277,25180401..25180474, 25180586..25180650,25180773..25180868,25180960..25181043, 25181130..25181185,25181267..25181374,25181465..25181645, 25182131..25182326)) /locus_tag="TCM_029962" /product="Bifunctional nuclease i" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04430.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009671t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04430.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc256t13" CDS complement(join(25180153..25180277,25180401..25180474, 25180586..25180650,25180773..25180868,25180960..25181043, 25181130..25181185,25181267..25181374,25181465..25181645, 25182131..25182256)) /locus_tag="TCM_029962" /note="paralog of Thecc1EG009671t1" /codon_start=1 /product="Bifunctional nuclease i" /protein_id="EOY28376.1" /db_xref="Phytozome:POPTR_0011s04430.1" /db_xref="TAIR:AT1G11190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYZ0" /translation="MITLWRLSSFGFVLLVGLAFILLPRTHGWSKEGHILTCRIAQGL LEPEAAEAVENLLPHYANGDLSSLCVWPDQIRHWHRYRWTSSLHFIDTPDDACTYDYS RDCHDPHGLKDMCVTGAIQNFTSQLLHYREGTSDRRHNMTEALLFLSHFMGDVHQPMH IGFTSDKGGNTIALRWFRHKSNLHHVWDREIVLTALADYYEKNLDSLQEEIVGNLTDG IWFDDVASWKECDDLLPCLDKYATESINIACKWGYQGVKSGETLADEYFNSRMPIVMK RIAQGGVRLAMILNQVFGQPEEGFAAAT" gene complement(25182407..25187992) /locus_tag="TCM_029963" /note="dbxref CacaoGD:Thecc1EG029963" mRNA complement(join(25182407..25182799,25183622..25183695, 25184129..25184196,25184549..25184641,25185257..25185340, 25186011..25186066,25186174..25186284,25186414..25186594, 25187353..25187486,25187736..25187992)) /locus_tag="TCM_029963" /product="Endonuclease 4 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29917.m001958" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009671t1" /inference="similar to AA sequence:ricco:29917.m001958" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03951t00001" mRNA complement(join(25182518..25182799,25183622..25183695, 25184129..25184196,25184549..25184641,25185257..25185340, 25186011..25186066,25186174..25186284,25186414..25186594, 25187353..25187486,25187736..25187862)) /locus_tag="TCM_029963" /product="Endonuclease 4 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29917.m001958" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009671t1" /inference="similar to AA sequence:ricco:29917.m001958" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00843t00001; alternateUTRof:Thecc1EG029963t1; inference alignment:Newbler:10:TSA:cgbaL_g03951t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc307t11" CDS complement(join(25182681..25182799,25183622..25183695, 25184129..25184196,25184549..25184641,25185257..25185340, 25186011..25186066,25186174..25186284,25186414..25186594, 25187353..25187481)) /locus_tag="TCM_029963" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29917.m001958; paralog of Thecc1EG009671t1" /codon_start=1 /product="Endonuclease 4 isoform 1" /protein_id="EOY28377.1" /db_xref="TAIR:AT4G21585.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYZ1" /translation="MGFRGMGSHELLWIGRVLVLMLLVHGVIGWGKEGHYAVCKIAEG YLTEDALATVKELLPDSAKGELASVCSWPDDIKWYYNWHWTSPLHYVDTPDLKCNYEY CRDCHDLAGHKNICVTGAIFNYTSQLFSAYQDYKPKLKYNLTEALMFLAHFMGDVHQP LHVGFTGDLGGNTITVRWYRRKTNLHHVWDTMIIDSAVKTFYGSDLAIMIQAIQRNIT DAWSNDIPSWEYCGYNHAVCPNLYASESVGLACKFAYRNATPGSTLEDDYFLSRLPIV EKRLAQGGIRLAAVLNRIFTSEVKIARA" CDS complement(join(25182681..25182799,25183622..25183695, 25184129..25184196,25184549..25184641,25185257..25185340, 25186011..25186066,25186174..25186284,25186414..25186594, 25187353..25187481)) /locus_tag="TCM_029963" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29917.m001958; paralog of Thecc1EG009671t1" /codon_start=1 /product="Endonuclease 4 isoform 1" /protein_id="EOY28378.1" /db_xref="TAIR:AT4G21585.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYZ1" /translation="MGFRGMGSHELLWIGRVLVLMLLVHGVIGWGKEGHYAVCKIAEG YLTEDALATVKELLPDSAKGELASVCSWPDDIKWYYNWHWTSPLHYVDTPDLKCNYEY CRDCHDLAGHKNICVTGAIFNYTSQLFSAYQDYKPKLKYNLTEALMFLAHFMGDVHQP LHVGFTGDLGGNTITVRWYRRKTNLHHVWDTMIIDSAVKTFYGSDLAIMIQAIQRNIT DAWSNDIPSWEYCGYNHAVCPNLYASESVGLACKFAYRNATPGSTLEDDYFLSRLPIV EKRLAQGGIRLAAVLNRIFTSEVKIARA" gene 25187915..25193062 /locus_tag="TCM_029964" /note="dbxref CacaoGD:Thecc1EG029964" mRNA join(25187915..25188764,25188970..25189149, 25189727..25189808,25189891..25189998,25190131..25190289, 25190581..25190739,25191566..25191858,25191996..25192175, 25192269..25192458,25192547..25192705,25192837..25193062) /locus_tag="TCM_029964" /product="Quinone oxidoreductase PIG3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03620.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0004s03620.1" /note="quality class is strong, express is medium, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10989t00001" CDS join(25188513..25188764,25188970..25189149, 25189727..25189808,25189891..25189998,25190131..25190289, 25190581..25190739,25191566..25191858,25191996..25192175, 25192269..25192458,25192547..25192705,25192837..25193033) /locus_tag="TCM_029964" /codon_start=1 /product="Quinone oxidoreductase PIG3" /protein_id="EOY28379.1" /db_xref="Phytozome:POPTR_0004s03620.1" /db_xref="TAIR:AT4G21580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65423" /translation="MKAIVITTPGGPEVLQLQQVDDPEIKDDEVLIKVEASALNRADT LQRKGAHPPPKGASPYPGLECSGTVLSVGKNVTRWKVGDQVCALLSGGGYAEKVAVPA GQVLPIPPGVSLKDAAGLPEVACTVWSTVFMMSRLSAGETFLVHGGSSGIGTFAIQIA KTKGATVFVTAGSEDKLAFCKNLGADVCINYKTEDFVTRVKEETGGKGVDVILDCIGA AYLQRNLDSLNFDGRLCLIGFQSGAVTEIKLNTLLPKRLTVQGAALRPRSHENKAMVV NEVEKNVWPAIAAGKVKPIIYKSFPLSETGEAHRLMENTSKRFLSKDSNPAMKAIVIT SPGDPEVLQLQEVEDPKIKDDEVLIKVEAAALNRGDIYQRQGFYPPPQGASPYPGLEC SGIIQSVGENVSRWKVGDKVCALLSGGGYAEKVTVPAGQVLPVPSSVSLSDAASFPEV ACTVWSTVFMMSRLCAGERLLIHGGSSGIGTFAIQIAKFKEAKVFVTAGDEQKLAFCK DLGADVCINYKTEDFVARVKEESGGKGVDVILDCVGAAYLQQNLDSLNVDGRLFIIGS LSGFVAEINIGTIFAKRLTIQASALRTRSIEEKAAIVSEVEKNVWPAIISGKVKPVVY KHFPLGEAAAAHQHMESGKHIGKILLIP" gene complement(25193184..25201090) /locus_tag="TCM_029965" /note="dbxref CacaoGD:Thecc1EG029965" mRNA complement(join(25193184..25193393,25193522..25193849, 25194261..25194472,25194794..25194904,25195260..25195367, 25195814..25195923,25196667..25196761,25197087..25197286, 25197430..25197594,25197827..25197945,25198737..25198824, 25198936..25199041,25199160..25199248,25199463..25199606, 25199770..25199862,25200052..25200118,25200236..25200348, 25200550..25200645,25200746..25201090)) /locus_tag="TCM_029965" /product="Beta-galactosidase 8" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041048t3" /inference="similar to AA sequence:Phytozome:POPTR_0011s04410.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7600t2" CDS complement(join(25193283..25193393,25193522..25193849, 25194261..25194472,25194794..25194904,25195260..25195367, 25195814..25195923,25196667..25196761,25197087..25197286, 25197430..25197594,25197827..25197945,25198737..25198824, 25198936..25199041,25199160..25199248,25199463..25199606, 25199770..25199862,25200052..25200118,25200236..25200348, 25200550..25200645,25200746..25200922)) /locus_tag="TCM_029965" /note="paralog of Thecc1EG041048t3" /codon_start=1 /product="Beta-galactosidase 8" /protein_id="EOY28380.1" /db_xref="Phytozome:POPTR_0011s04410.1" /db_xref="TAIR:AT2G28470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9RI67" /translation="MDTKKPLSLALVLVLVFVSYCFESVLSTTVTYDHRALVIDGKRR VLQSGSIHYPRSTPEVWPELIRKSKEGGLDVIETYVFWNYHEPVRGQYYFEGRFDLVK FVKAVQEAGLLVHLRIGPYACAEWNYGGFPLWLHFIPGIQFRTTNDMFKREMLRFLTK IVGLMKEENLFASQGGPIILAQVENEYELVEWAYGIAGELYVKWAAETAISLNTTVPW VMCRQEDAPDPIINTCNGFYCDRFTPNSPSKPKMWTENYSGWFKSFGYPIPHRPVEDL AFAIARFFETGGAFHNYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGH LRDLHLAIKHCEEYLISSDPTHQQLGHNLEAHIYYKSSNDCAAFLANYDSNLDANVTF NGNLYFLPAWSVSILPDCKNVIFNTAKVVSQRNFGDNSFAQTTTVNQFSLSASSWSWY NEEPGVWGNNLFTESRLLEQISTTKDTSDYLWYTTSINIMPDQSKEVFLLIESLGHAA LIFVNKRLVAFGYGNHDDASFSISEKISLVEGNNTLDMLSMMVGLQNFGPWFDVQGAG IFSVVLVDPWNRKNDVSSGEWTYQVGLEGEYLGLDKVSLANSSLWKKGSIPPVNKTLI WYKVTFLAPEGKGPLALNLTSMGKGQAWVNGQSIGRYWPAYLSPSEGCTKNCDYRGEY DSTKCQQNCGQPAQTLYHIPRSWVHPGENLLVLHEELGGDPTKISVLTRTGQEICSLV SEKDPLPADSWKPNLGFMSQTPEARLTCEKGWRIASINFASFGSPQGNCGEFRTGICH ADIISMVQKACIGQEQCSIPVSTANLGDPCPGILKSLAIEALCSD" gene 25201568..25204275 /locus_tag="TCM_029966" /note="dbxref CacaoGD:Thecc1EG029966" mRNA join(25201568..25202347,25202446..25202568, 25202655..25202945,25203659..25204134) /locus_tag="TCM_029966" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29917.m001962" /inference="similar to AA sequence:ricco:29917.m001962" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7650t1" mRNA join(25201735..25201882,25202047..25202347, 25202446..25202568,25202655..25202945,25203659..25204275) /locus_tag="TCM_029966" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29917.m001962" /inference="similar to AA sequence:ricco:29917.m001962" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:PASA:2:TSA:puevd3b028983t1a2; alternateUTRof:Thecc1EG029966t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7650t1" mRNA join(25201769..25201882,25202047..25202347, 25202446..25202568,25202655..25202762,25202875..25202946, 25203659..25204273) /locus_tag="TCM_029966" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29917.m001962" /inference="similar to AA sequence:ricco:29917.m001962" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7650t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7650t1" mRNA join(25201771..25202347,25202446..25202568, 25202655..>25202941) /locus_tag="TCM_029966" /product="DUF300 family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29917.m001962" /inference="similar to AA sequence:ricco:29917.m001962" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc382t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7650t1" CDS join(25202084..25202347,25202446..25202568, 25202655..25202945,25203659..25203868) /locus_tag="TCM_029966" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29917.m001962" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY28381.1" /db_xref="TAIR:AT1G11200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I7E7" /translation="MDFSHLNRGQITLMGSAFCVMLTMHFTLQLLSQHLFYWKNPKEQ KAILIIILMAPIYAIDSFVGLLDVRGSKAFFMFLESVKECYEALVIAKFLALMYSYLN ISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLNHRTLKLLKHWTWQFVVIRPVCSIL MIILQVLGVYPSWLSWTFTIILNISVSLALYSLVIFYHVFAKELAPHKPLAKFMCIKG IVFFCFWQGVVLDILVAMGIIRSHHFWLDVEHLEEALQNVLVCLEMVVFSVLQQYAYH VAPYSGEVEAKMKLGKKNE" CDS join(25202084..25202347,25202446..25202568, 25202655..25202945,25203659..25203868) /locus_tag="TCM_029966" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29917.m001962" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY28383.1" /db_xref="TAIR:AT1G11200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I7E7" /translation="MDFSHLNRGQITLMGSAFCVMLTMHFTLQLLSQHLFYWKNPKEQ KAILIIILMAPIYAIDSFVGLLDVRGSKAFFMFLESVKECYEALVIAKFLALMYSYLN ISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLNHRTLKLLKHWTWQFVVIRPVCSIL MIILQVLGVYPSWLSWTFTIILNISVSLALYSLVIFYHVFAKELAPHKPLAKFMCIKG IVFFCFWQGVVLDILVAMGIIRSHHFWLDVEHLEEALQNVLVCLEMVVFSVLQQYAYH VAPYSGEVEAKMKLGKKNE" CDS join(25202084..25202347,25202446..25202568, 25202655..25202762,25202875..25202946,25203659..25203868) /locus_tag="TCM_029966" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29917.m001962" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY28382.1" /db_xref="TAIR:AT1G11200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I7E7" /translation="MDFSHLNRGQITLMGSAFCVMLTMHFTLQLLSQHLFYWKNPKEQ KAILIIILMAPIYAIDSFVGLLDVRGSKAFFMFLESVKECYEALVIAKFLALMYSYLN ISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLNHRTLKLLKHWTWQFVVIRPVCSIL MIILQSWHLTSHLQSSCASRGLFSSAFGRGVVLDILVAMGIIRSHHFWLDVEHLEEAL QNVLVCLEMVVFSVLQQYAYHVAPYSGEVEAKMKLGKKNE" CDS join(25202084..25202347,25202446..25202568, 25202655..>25202939) /locus_tag="TCM_029966" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29917.m001962" /codon_start=1 /product="DUF300 family protein isoform 4" /protein_id="EOY28384.1" /db_xref="TAIR:AT4G21570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D6R096" /translation="MDFSHLNRGQITLMGSAFCVMLTMHFTLQLLSQHLFYWKNPKEQ KAILIIILMAPIYAIDSFVGLLDVRGSKAFFMFLESVKECYEALVIAKFLALMYSYLN ISISKNIVPDEIKGREIHHSFPMTLFQPRTVRLNHRTLKLLKHWTWQFVVIRPVCSIL MIILQVLGVYPSWLSWTFTIILNISVSLALYSLVIFYHVFAKELAPHKPLAKFMCIKG IVFFCF" gene complement(25204044..25211608) /locus_tag="TCM_029968" /note="dbxref CacaoGD:Thecc1EG029968" mRNA complement(join(25204044..25204141,25208855..25209375, 25210167..25210573,25210733..25210794,25210909..25211019, 25211115..25211608)) /locus_tag="TCM_029968" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03459t00001" mRNA complement(join(25204044..25204141,25208855..25209375, 25210167..25210573,25210733..25210794,25210897..25211019, 25211115..25211608)) /locus_tag="TCM_029968" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b028984t1a2; inference alignment:Newbler:10:TSA:cgbaL_g03459t00001" mRNA complement(join(<25205069..25205079,25210167..25210573, 25210733..25210797,25210909..25211019,25211115..25211554)) /locus_tag="TCM_029968" /product="Uncharacterized protein isoform 3" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is none, intron is medium, protein is partial3; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7646t1; inference alignment:Newbler:10:TSA:cgbaL_g03459t00001" CDS complement(join(<25205069..25205079,25210167..25210573, 25210733..25210797,25210909..25211019,25211115..25211330)) /locus_tag="TCM_029968" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY28387.1" /translation="MERQRNEFIRRQRNVVRRPLLTELPRPSPPNSNRKPTGHTQTAV DLKCNTCHYIIPRGTNMPFRCYWRSYIPGCPDPRFKRHMNCSNCSADIVIDLVDGKYV AVMGATQQEDDSEAICVTRGRLSNFYKISRVILKQFESLRDTSVSFTNQDLCRMILKL FESLGDTSCSSTNPDRWRMILKQIESLGDTSVSSTSHDLCRMILKQFESLGDTSVSST NQDLCRLILKQFESLGDTSVSSTNQDLCRMILKQFESLGDTSVSSANQERAP" gene 25206878..25208375 /locus_tag="TCM_029969" /note="dbxref CacaoGD:Thecc1EG029969" mRNA join(25206878..25207238,25207322..25208375) /locus_tag="TCM_029969" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS join(25207146..25207238,25207322..25208326) /locus_tag="TCM_029969" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28388.1" /translation="MSLCFCLNFANPLRRRLREFYHPLPRNKFLTRDTAGSKLSDVTN QLSRAREATFPCLFLSHQLSAGYFLFFPHNSTAVSVGSGGAVDFRNVDVLSSCPTSGW LLLMHGYQVFYFNVRTQDRFDLPDLPASLEGTRKGCFSRCPTDESNVTMIIDHQSISF LVYRYKSDIGYWVQDEGLVVPDTHLDASTHTKVDDEFYWVCKSDNQLFILKKWSSKII TDEELAETRKKREALDIQLLSFDIDVREADAVSSVVDPSGCFLVLEKNELFELYKLVI GDDDVAHTVRIVDLNQKNFFTVSDSCGFWLSSVVDTNTLYLASYLEHDCVKCYLIMVS TKRKNLKGNEKKNGQLRLFFMHCNSRVSLNH" CDS complement(join(25209359..25209375,25210167..25210573, 25210733..25210794,25210909..25211019,25211115..25211330)) /locus_tag="TCM_029968" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY28385.1" /translation="MERQRNEFIRRQRNVVRRPLLTELPRPSPPNSNRKPTGHTQTAV DLKCNTCHYIIPRGTNMPFRCYWRSYIPGCPDPRFKRHMNCSNCSADIVIDLVDGKYV AVMGATQEDDSEAICVTRGRLSNFYKISRVILKQFESLRDTSVSFTNQDLCRMILKLF ESLGDTSCSSTNPDRWRMILKQIESLGDTSVSSTSHDLCRMILKQFESLGDTSVSSTN QDLCRLILKQFESLGDTSVSSTNQDLCRMILKQFESLGDTSVSSANQESAPP" CDS complement(join(25209359..25209375,25210167..25210573, 25210733..25210794,25210897..25211019,25211115..25211330)) /locus_tag="TCM_029968" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY28386.1" /translation="MERQRNEFIRRQRNVVRRPLLTELPRPSPPNSNRKPTGHTQTAV DLKCNTCHYIIPRGTNMPFRCYWRSYIPGCPDPRFKRHMNCSNCSADIVIDLVDGKYV AVMGATQVPDPEDDSEAICVTRGRLSNFYKISRVILKQFESLRDTSVSFTNQDLCRMI LKLFESLGDTSCSSTNPDRWRMILKQIESLGDTSVSSTSHDLCRMILKQFESLGDTSV SSTNQDLCRLILKQFESLGDTSVSSTNQDLCRMILKQFESLGDTSVSSANQESAPP" mobile_element 25210554..25210613 /note="source:scaffold_8_CACTA_0860 10395 10455" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25210570..25210607) /note="source:scaffold_6_CACTA_0706 1458 1495" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25210575..25210632 /note="source:INTACT701_F305_scaffold_10-int 12195 12256" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25211424..25211606 /note="source:CACAO_Helitron_E242_scaffold_9 1 185" /mobile_element_type="transposon:Helitron" gene 25212502..25217718 /locus_tag="TCM_029970" /note="dbxref CacaoGD:Thecc1EG029970" mRNA join(25212502..25212853,25212971..25213095, 25214000..25214058,25214219..25214309,25214450..25214504, 25214612..25214702,25214818..25215046,25215562..25215826, 25215988..25216154,25216424..25216645,25216726..25216784, 25217289..25217672) /locus_tag="TCM_029970" /product="ARF-GAP domain 5, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29917.m001963" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031318t2" /inference="similar to AA sequence:Phytozome:POPTR_0011s04390.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7632t3" mRNA join(25212825..25212853,25212962..25213095, 25214000..25214058,25214219..25214309,25214450..25214504, 25214612..25214702,25214818..25215046,25215562..25215826, 25215988..25216154,25216424..25216645,25216726..25216784, 25217289..25217718) /locus_tag="TCM_029970" /product="ARF-GAP domain 5, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29917.m001963" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031318t2" /inference="similar to AA sequence:Phytozome:POPTR_0011s04390.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc989t2; alternateUTRof:Thecc1EG029970t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7632t3" CDS join(25213045..25213095,25214000..25214058, 25214219..25214309,25214450..25214504,25214612..25214702, 25214818..25215046,25215562..25215826,25215988..25216154, 25216424..25216645,25216726..25216784,25217289..25217448) /locus_tag="TCM_029970" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG031318t2" /codon_start=1 /product="ARF-GAP domain 5, putative isoform 1" /protein_id="EOY28389.1" /db_xref="Phytozome:POPTR_0011s04390.1" /db_xref="TAIR:AT5G54310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CW29" /translation="MNEKANVSKQLNAKHRKILEGLLKLPENRECADCKSKGPRWASV NLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVSFIQSMGNEKSNNYWEAELPP NYDRVGIENFIRAKYEEKRWVPRGRKPKLPSSVREEKELLYRQPRSGGFKYMNNVNHV LEEKKVTHPSIANNSIPTPKSCSQAHVNVPQKVTPDTRSQEPLQNSEPSVSMAESPNE EVNPTPSVSNAESIKQDVKTTSSAAPPKIDYATELFNLLSMGDSRENGSKTSAHDNFW AGLSSAEAKSTRDASDSSILSQTKVQCKYGIEDLFRDSTTVKQTFPEKPQEDAKPDIQ YSSSMVSPTSIHQQQLAMLSQQQSFMATAAKPNGGSQAFPVNAHHGMHFPAPNSGSIG HQFPRVVMPVAGLQKHMLVGSNQQMYPAGNSVNFPTSSLHTPGPGVPPTIGMKSIGGR PISASPVPSVTPTQWGKDYDFSSLTQGMFTKQ" CDS join(25213045..25213095,25214000..25214058, 25214219..25214309,25214450..25214504,25214612..25214702, 25214818..25215046,25215562..25215826,25215988..25216154, 25216424..25216645,25216726..25216784,25217289..25217448) /locus_tag="TCM_029970" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG031318t2" /codon_start=1 /product="ARF-GAP domain 5, putative isoform 1" /protein_id="EOY28390.1" /db_xref="Phytozome:POPTR_0011s04390.1" /db_xref="TAIR:AT5G54310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CW29" /translation="MNEKANVSKQLNAKHRKILEGLLKLPENRECADCKSKGPRWASV NLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVSFIQSMGNEKSNNYWEAELPP NYDRVGIENFIRAKYEEKRWVPRGRKPKLPSSVREEKELLYRQPRSGGFKYMNNVNHV LEEKKVTHPSIANNSIPTPKSCSQAHVNVPQKVTPDTRSQEPLQNSEPSVSMAESPNE EVNPTPSVSNAESIKQDVKTTSSAAPPKIDYATELFNLLSMGDSRENGSKTSAHDNFW AGLSSAEAKSTRDASDSSILSQTKVQCKYGIEDLFRDSTTVKQTFPEKPQEDAKPDIQ YSSSMVSPTSIHQQQLAMLSQQQSFMATAAKPNGGSQAFPVNAHHGMHFPAPNSGSIG HQFPRVVMPVAGLQKHMLVGSNQQMYPAGNSVNFPTSSLHTPGPGVPPTIGMKSIGGR PISASPVPSVTPTQWGKDYDFSSLTQGMFTKQ" mRNA join(25213070..25213095,25214000..25214058, 25214219..25214309,25214450..25214504,25214612..25214702, 25214818..25215046,25215562..25215826,25215988..25216154, 25216424..25216645,25216726..25216784,25217303..25217718) /locus_tag="TCM_029970" /product="ARF-GAP domain 5, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29917.m001963" /inference="similar to AA sequence:ricco:29917.m001963" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc961t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7632t3" CDS join(25214262..25214309,25214450..25214504, 25214612..25214702,25214818..25215046,25215562..25215826, 25215988..25216154,25216424..25216645,25216726..25216784, 25217303..25217348) /locus_tag="TCM_029970" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29917.m001963" /codon_start=1 /product="ARF-GAP domain 5, putative isoform 3" /protein_id="EOY28391.1" /db_xref="TAIR:AT5G54310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CW29" /translation="MQCSGIHRSLGVHISKVRSATLDTWLPEQVSFIQSMGNEKSNNY WEAELPPNYDRVGIENFIRAKYEEKRWVPRGRKPKLPSSVREEKELLYRQPRSGGFKY MNNVNHVLEEKKVTHPSIANNSIPTPKSCSQAHVNVPQKVTPDTRSQEPLQNSEPSVS MAESPNEEVNPTPSVSNAESIKQDVKTTSSAAPPKIDYATELFNLLSMGDSRENGSKT SAHDNFWAGLSSAEAKSTRDASDSSILSQTKVQCKYGIEDLFRDSTTVKQTFPEKPQE DAKPDIQYSSSMVSPTSIHQQQLAMLSQQQSFMATAAKPNGGSQAFPVNAHHGMHFPA PNSGSIGHQFPRVVMPVAGLQKHMLVGSNQQMYPAGNSVNFPTSRARSSTNHWHEKHW R" gene complement(25218736..25222060) /locus_tag="TCM_029971" /note="dbxref CacaoGD:Thecc1EG029971" mRNA complement(join(25218736..25219059,25221882..25222060)) /locus_tag="TCM_029971" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage" CDS complement(join(25218899..25219059,25221882..25221930)) /locus_tag="TCM_029971" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28392.1" /translation="MEQCGSVPPIHFHLVKDSSYGQEQGIWEMGWKKMGHFFKSTVQV RYWSGAPSFRWMGDRFHPLIGTWLP" gene 25223215..25225130 /locus_tag="TCM_029972" /note="dbxref CacaoGD:Thecc1EG029972" mRNA join(25223215..25223905,25224280..25225130) /locus_tag="TCM_029972" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29917.m001964" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031316t1" /inference="similar to AA sequence:ricco:29917.m001964" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04558t00001" CDS join(25223305..25223905,25224280..25224677) /locus_tag="TCM_029972" /note="dbxref ricco:29917.m001964; paralog of Thecc1EG031316t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28393.1" /db_xref="TAIR:AT1G61260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYZ6" /translation="MVSMSTLILSLKVLFISIGMLAIAFGLKVSVPLVLEFSVSQAPL LWSTFRSWLKPPYLYVIINGIIITIAASSRFNHKTGEKDQKEQMQQRSKISVDQGPAF EDEMKSGLDFGVVESSALVYEQEQRGEEVETRGFEEESNAAVEDVGDGGDEFAISKSE WIPPRRMDSSEIPSDSLLPTEKPPAASRFGHRKPVRANPEGGRALRVAKPKRHETLEN TWKMITEGRAMPLTRHLKKSDTWENHGRDVNVEALADSPLMKKSETFRDRTNYQPPPV QVTSSPASGKLRKEPSLSQDELNRRVEAFIKKFNDEMRLQRQESLNQYMEMINRGS" gene complement(25225462..25232780) /locus_tag="TCM_029973" /note="dbxref CacaoGD:Thecc1EG029973" mRNA complement(join(25225462..25226383,25226593..25227016, 25227929..25228310,25228864..25229316,25229431..25229601, 25229704..25229888,25230221..25231764,25232379..25232780)) /locus_tag="TCM_029973" /product="Tetratricopeptide repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29917.m001966" /inference="similar to AA sequence:ricco:29917.m001966" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7659t1" CDS complement(join(25226371..25226383,25226593..25227016, 25227929..25228310,25228864..25229316,25229431..25229601, 25229704..25229888,25230221..25231718)) /locus_tag="TCM_029973" /note="dbxref ricco:29917.m001966" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein" /protein_id="EOY28394.1" /db_xref="TAIR:AT5G28740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LKU3" /translation="MSLPKELYPSQDDLLYEEELLRNPFSLKLWWRYLIARSDAPFKK RFIIYERALKALPGSYKLWHAYLRERLEIVRNLPVTHPQYETLNNTFERALVTMHKMP RIWIMYLLTLTEQKLISKTRKTFDRALCALPVTQHDRIWEPYLVFVSQKGIPIETSLR VYRRYLKYDPSHIEDFIEFLVNSSLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELC DLLTTHATEVSGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRNLFEKARDIFEEGM TTVVTVRDFSVIFDAYSQFEESMVALKMESIDLSDEEEDDDVEEDEHEEDIRLDIDLC KSKSKFEKHIFKGFWLHDDKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRR VKLFEGKPTKQILTYTEAVRTIDPMKAVGKPHTLWVAFAKLYETYKDLANARVIFDKA VQVNYKTVDHLASVWAEWAEMELRHKNFKGALELMRRATAEPSVEVKRRVAADGNEPV QMKLHKSLRLWTFYVDLEESLGTLESTRAVYERILDLRIATPQIIINYAFLLEENKYF EDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFEHAVETAPADAV KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNNEKLGMYEIYIARAAEIFGVPKTRE IYEQAIESALPDKDVKTMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDADFWDKW REFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQNIDEAKEKLKQAGIS EDEMATLERQLLPAANDSSREVGFVSAGVESQADGGMKTTANHEDIELPEESDSEDEE RVEIAQKDVPSAVFGGLVRKREDSDKDGGGGDVSAANDKDDALNPLYLQFAKPEEDYG LAKRAMEVYDQATKAVPNHEKLGMYEIYIARAAGISGVPKTREIYEQAIESGLPDEDT KTMCLRYAELENSLGEIDCARGIYVFASQFADPCPDADFWDEWRGFEVQHGNGDTFTE CFCKIRARHIQ" mobile_element complement(25232466..25232553) /note="source:scaffold_9_CACTA_0942 5277 5362" /mobile_element_type="transposon:TIR/CACTA" gene 25232875..25235716 /locus_tag="TCM_029974" /note="dbxref CacaoGD:Thecc1EG029974" mRNA join(25232875..25233006,25233558..25234312, 25234780..25234825,25234994..25235055,25235302..25235716) /locus_tag="TCM_029974" /product="Vacuolar protein sorting-associated protein VPS28 family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03550.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03550.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16865t1" CDS join(25233691..25234312,25234780..25234825, 25234994..25235055,25235302..25235504) /locus_tag="TCM_029974" /codon_start=1 /product="Vacuolar protein sorting-associated protein VPS28 family protein" /protein_id="EOY28395.1" /db_xref="Phytozome:POPTR_0004s03550.1" /db_xref="TAIR:AT4G05000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S9T7" /translation="MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIITSSE YETECQKLIAHFKTLASTLKDTVPSIERFADTYKMDCPAAINRLVTSGVPATVEHRAA AAASATTSAAIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLSASLNKLSILPPDFE GKTKMKEWISRLSKMGAADELTEQQARQLHFDLESSYNSFMAALPNAGSRLEIVKIGL SSFPLTSAGCRSRTKDVGQYTPNMLAANQKPANQNSTGSSELLSRIIPFLFQHHNHSS FTITHNKTESDRIYRNTLKASDCNSTPSPAYRVV" gene complement(25235718..25237140) /locus_tag="TCM_029975" /note="dbxref CacaoGD:Thecc1EG029975" mRNA complement(25235718..25237140) /locus_tag="TCM_029975" /product="Syntaxin of plants 124" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007960t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03540.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1677t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2327t1" CDS complement(25236143..25237051) /locus_tag="TCM_029975" /note="paralog of Thecc1EG007960t1" /codon_start=1 /product="Syntaxin of plants 124" /protein_id="EOY28396.1" /db_xref="Phytozome:POPTR_0004s03540.1" /db_xref="TAIR:AT1G61290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I3K6" /translation="MNDLISISFKKYTDLKQQAYLDDMEAGNESVNLDKFFEDVENVK EDLKNVERLYKALQDANEESKTVHNAKTMKQLRARMDTDVEQVLKRVKIIKGKLEALE RSNAASRSIPGCGPGSSADRTRTSVVSGLGKKLKVLMDDFQGLRSRMQSEYKETVERR YFTITGQKADEDTIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEK NLIELHQIFLDMAALVEAQGHQLNDIESHVAHASSFVRRGTENLQEAREYQKNSRKWT CIAILAAAVLIFVLLFPLLPTIINLL" gene complement(25237897..25247552) /locus_tag="TCM_029976" /note="dbxref CacaoGD:Thecc1EG029976" mRNA complement(join(25237897..25239401,25239576..25239646, 25239917..25240030,25240293..25240342,25240822..25241123, 25241209..25241227,25241519..25241598,25242002..25242176, 25242540..25242636,25242896..25243277,25243470..25243806, 25244031..25244129,25244259..25244340,25244646..25244862, 25247144..25247552)) /locus_tag="TCM_029976" /product="Transcription factor, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03530.1" /inference="similar to AA sequence:ricco:29917.m001969" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7740t6" mobile_element complement(25237958..25238042) /note="source:scaffold_1_CACTA_0005 6267 6352" /mobile_element_type="transposon:TIR/CACTA" mRNA complement(join(25238027..25239401,25239576..25239646, 25239917..25240030,25240293..25240342,25240822..25241085, 25241183..25241227,25241519..25241598,25242002..25242176, 25242540..25242636,25242938..25243277,25243470..25243806, 25244031..25244129,25244259..25244340,25244646..25244918)) /locus_tag="TCM_029976" /product="HSI2-like 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03530.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03530.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7740t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7740t6" CDS complement(join(25238629..25239401,25239576..25239646, 25239917..25240030,25240293..25240342,25240822..25241085, 25241183..25241227,25241519..25241598,25242002..25242176, 25242540..25242636,25242938..25243277,25243470..25243806, 25244031..25244129,25244259..25244340,25244646..25244782)) /locus_tag="TCM_029976" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="HSI2-like 1 isoform 2" /protein_id="EOY28398.1" /db_xref="Phytozome:POPTR_0004s03530.1" /db_xref="TAIR:AT4G32010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H228" /translation="MTSTSGAASSSKICFNSDCKDLKSERARKGWRLRTGELAELCDR CASAFEEGRFCDTFHLNASGWRSCESCGKRVHCGCIVSVYAFTLLDAGGIECIACARK NVVLGSNSSWPPSLLFHPPLSERLKDYSAKGWSQLAGSGPVPWRQAPSLFNSPISQPE WHSKVCYEVDLSTGIDRLNADRLSTPSLEKKKIEDFSERLMNGTLKLGTRDIHENGNA GINCEEQPGSCLTKSQQPSLKEEPSNPPLGLSVPYTSPDEANGQIGVSGPHLRPNPPP PLAKQFHSNLHNGLDSSGETQIRNGRPRPDGRGRNQLFPRYWPRFTDQDLQQISGDSN SVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQF RFWPNNNSRMYVLEGVTPCIQNMQLQAGDVVTFSRLEPGGKLVMGCRKASTASASEQD NEAKNSNGVSTHGDAELADPTSWSKVDKSGYIAKEALGTKLAVSRKRKNSTLGSKSKR LRIDNEDLIELKLTWEEAQGLLRPPPNHVPSVVVIEGFEFEEYEDAPILGKPTIFATD NSGEKIQWAQCEDCFKWRRLPSSALLPSKWTCASNSWDPERSFCSVAQELTAEQLDDL LPHCNPAASKKMKAAKQEPENVDALEGLDTLANLAILGEGEALPASSQATTKHPRHRP GCSCIVCIQPPSGKGPKHKQTCTCNVCQTVKRRFRTLMLRREKKQSQKEAETTRKKQQ PSLPDKLLDDDPLPSTNAGNSSPNPKKLVSEGSDDDPNRIKSSTSPFKGQIDLNIQPE REEELSPGSDSGSMMRLLQDATERYLRQQRMLSSGVNSDSTVTQAQSGGGTEGEKTSS SVNLGASHQDADRDHSAVFSIKSSAPTSATG" CDS complement(join(25238629..25239401,25239576..25239646, 25239917..25240030,25240293..25240342,25240822..25241123, 25241209..25241227,25241519..25241598,25242002..25242176, 25242540..25242636,25242896..25243277,25243470..25243806, 25244031..25244129,25244259..25244340,25244646..25244782)) /locus_tag="TCM_029976" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29917.m001969" /codon_start=1 /product="Transcription factor, putative isoform 1" /protein_id="EOY28397.1" /db_xref="TAIR:AT4G32010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S617" /translation="MTSTSGAASSSKICFNSDCKDLKSERARKGWRLRTGELAELCDR CASAFEEGRFCDTFHLNASGWRSCESCGKRVHCGCIVSVYAFTLLDAGGIECIACARK NVVLGSNSSWPPSLLFHPPLSERLKDYSAKGWSQLAGSGPVPWRQAPSLFNSPISQPE WHSKVCYEVDLSTGIDRLNADRLSTPSLEKKKIEDFSERLMNGTLKLGTRDIHENGNA GINCEEQPGSCLTKSQQPSLKEEPSNPPLGLSVPYTSPDEANGQIGVSGPHLRPNPPP PLAKQFHSNLHNGLDSSGETQIRNGRPRPDGRGRNQLFPRYWPRFTDQDLQQISGEYP LILWGILDNWECSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPL KVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDVVTFSRLEPGGKLVM GCRKASTASASEQDNEAKNNSSASPSFSSINQAELADPTSWSKVDKSGYIAKEALGTK LAVSRKRKNSTLGSKSKRLRIDNEDLIELKLTWEEAQGLLRPPPNHVPSVVVIEGFEF EEYEDAPILGKPTIFATDNSGEKIQWAQCEDCFKWRRLPSSALLPSKWTCASNSWDPE RSFCSVAQELTAEQLDDLLPHCNPAASKKMKAAKQEPENVDALEGLDTLANLAILGEG EALPASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCQTVKRRFRTLMLR REKKQSQKEAETTRKKQQPSLPDKLLDDDPLPSTNAGNSSPNPKKLVSEGSDDDPNRI KSSTSPFKGQIDLNIQPEREEELSPGSDSGSMMRLLQDATERYLRQQRMLSSGVNSDS TVTQAQSGGGTEGEKTSSSVNLGASHQDADRDHSAVFSIKSSAPTSATG" mobile_element complement(25246474..25246518) /note="source:CACAO_M_E58268_F98_scaffold_9 619 664" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25246679..25247745 /locus_tag="TCM_029977" /note="dbxref CacaoGD:Thecc1EG029977" mRNA 25246679..25247745 /locus_tag="TCM_029977" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1189t6_C1" gene complement(25246935..25251795) /locus_tag="TCM_029978" /note="dbxref CacaoGD:Thecc1EG029978" mRNA complement(join(25246935..25247949,25248143..25248305, 25248439..25248561,25249224..25249511,25249654..25249724, 25249901..25249978,25250095..25250181,25250661..25250733, 25250827..25250927,25251013..25251135,25251216..25251759)) /locus_tag="TCM_029978" /product="Sphingosine kinase 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29933.m001415" /inference="similar to AA sequence:Phytozome:GSVIVT01003211001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7661t2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1189t2" mRNA complement(join(25247006..25248009,25248143..25248305, 25248439..25248561,25249224..25249511,25249654..25249724, 25249901..25249978,25250095..25250181,25250661..25250733, 25250827..25250927,25251013..25251135,25251216..25251640)) /locus_tag="TCM_029978" /product="Sphingosine kinase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29933.m001415" /inference="similar to AA sequence:Phytozome:GSVIVT01003211001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1189t2" CDS 25247272..25247568 /locus_tag="TCM_029977" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28399.1" /translation="MILGTTLMCCKWIHLIWLSCHRPCQRDPTHPERESSRRLESFLV SGCECESAFAYMAFDSFVFEVLAIVLDRPPKTEPNQTVKETEADTERCYVTVPT" CDS complement(join(25247945..25247949,25248143..25248305, 25248439..25248561,25249224..25249511,25249654..25249724, 25249901..25249978,25250095..25250181,25250661..25250733, 25250827..25250927,25251013..25251135,25251216..25251549)) /locus_tag="TCM_029978" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Sphingosine kinase 1 isoform 2" /protein_id="EOY28401.1" /db_xref="Phytozome:GSVIVT01003211001" /db_xref="TAIR:AT4G21540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ01" /translation="MDQGGQPENLSTLLSDRVLVNGTVVPLTFTGDGKLRWTGKDQRC LTMEKEVLGFALEGTRIRVKYAVEKGDGICCLGNRGDLVRQSFVFEPLSDDSLRLWSQ KLRDYIDSLGRPKRLLVFVNPYGGKKSATKIFSEDVKPYLEDADVQITVIETKHQLHA KEVAKTLDLSKYDGIVCVSGDGILVEVVNGLLEREDWAAAIKIPIGMVPAGTGNGMVK SLLDAVGQPCSTSNAILAVIRGHKCSLDVATILQGETRFFSVLMLAWGLIADIDIESE KYRWMGSARLDFYALQRLLHLRHYNGCVSFVPAPGFEDYGEPTGYHGEPTSEESPTEE NSVKTQRHGYHGSDFKLENKHWRTISGPFISVWLHNVPWGSEDCMAAPKAKFSDGCLD LIMVRDSPKLPLLSLMSKMNDGSHVKSPHVTYIKVKAFVLEPGPRVEDPAKEGIIDSD GEVLARGKGTYKCDQKALMAYDKLQLTLDQA" mRNA complement(join(25247982..25248561,25249224..25249511, 25249654..25249724,25249901..25249978,25250095..25250181, 25250661..25250733,25250827..25250927,25251013..25251135, 25251216..25251795)) /locus_tag="TCM_029978" /product="Sphingosine kinase 1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29933.m001415" /inference="similar to AA sequence:Phytozome:GSVIVT01003211001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1189t4; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1189t2" CDS complement(join(25247990..25248009,25248143..25248305, 25248439..25248561,25249224..25249511,25249654..25249724, 25249901..25249978,25250095..25250181,25250661..25250733, 25250827..25250927,25251013..25251135,25251216..25251549)) /locus_tag="TCM_029978" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Sphingosine kinase 1 isoform 1" /protein_id="EOY28400.1" /db_xref="Phytozome:GSVIVT01003211001" /db_xref="TAIR:AT4G21540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ01" /translation="MDQGGQPENLSTLLSDRVLVNGTVVPLTFTGDGKLRWTGKDQRC LTMEKEVLGFALEGTRIRVKYAVEKGDGICCLGNRGDLVRQSFVFEPLSDDSLRLWSQ KLRDYIDSLGRPKRLLVFVNPYGGKKSATKIFSEDVKPYLEDADVQITVIETKHQLHA KEVAKTLDLSKYDGIVCVSGDGILVEVVNGLLEREDWAAAIKIPIGMVPAGTGNGMVK SLLDAVGQPCSTSNAILAVIRGHKCSLDVATILQGETRFFSVLMLAWGLIADIDIESE KYRWMGSARLDFYALQRLLHLRHYNGCVSFVPAPGFEDYGEPTGYHGEPTSEESPTEE NSVKTQRHGYHGSDFKLENKHWRTISGPFISVWLHNVPWGSEDCMAAPKAKFSDGCLD LIMVRDSPKLPLLSLMSKMNDGSHVKSPHVTYIKVKAFVLEPGPRVEDPAKEGIIDSD GEVLARGKGTYKCDQKALMAYDKLQLTLDQEPTKEK" CDS complement(join(25248382..25248561,25249224..25249511, 25249654..25249724,25249901..25249978,25250095..25250181, 25250661..25250733,25250827..25250927,25251013..25251135, 25251216..25251549)) /locus_tag="TCM_029978" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Sphingosine kinase 1 isoform 3" /protein_id="EOY28402.1" /db_xref="Phytozome:GSVIVT01003211001" /db_xref="TAIR:AT4G21540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ01" /translation="MDQGGQPENLSTLLSDRVLVNGTVVPLTFTGDGKLRWTGKDQRC LTMEKEVLGFALEGTRIRVKYAVEKGDGICCLGNRGDLVRQSFVFEPLSDDSLRLWSQ KLRDYIDSLGRPKRLLVFVNPYGGKKSATKIFSEDVKPYLEDADVQITVIETKHQLHA KEVAKTLDLSKYDGIVCVSGDGILVEVVNGLLEREDWAAAIKIPIGMVPAGTGNGMVK SLLDAVGQPCSTSNAILAVIRGHKCSLDVATILQGETRFFSVLMLAWGLIADIDIESE KYRWMGSARLDFYALQRLLHLRHYNGCVSFVPAPGFEDYGEPTGYHGEPTSEESPTEE NSVKTQRHGYHGSDFKLENKHWRTISGPFISVWLHNVPWGSEDCMAAPKAKFSDGCLD LIMVRDSPKLPLLSLMSKMNDGSHVKSPHVTYIKVSSLNEPGMILLTFFYTR" gene 25252744..25254750 /locus_tag="TCM_029979" /note="dbxref CacaoGD:Thecc1EG029979" mRNA join(25252744..25252897,25253002..25253107, 25253846..25253969,25254252..25254750) /locus_tag="TCM_029979" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04320.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04320.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12983t00001" CDS join(25252776..25252897,25253002..25253107, 25253846..25253969,25254252..25254505) /locus_tag="TCM_029979" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28403.1" /db_xref="Phytozome:POPTR_0011s04320.1" /db_xref="TAIR:AT1G11240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H7U1" /translation="MEEEYEEEAPRQLSKPRGRHIKKRALKNKALAVSFNEKDLRDYV TGFHKRKKKRRKEAQKKQEEAERRKRIEQRKKRKLEKEFALYGGAPPSTASGYDESDE NNVEDEGSEPTASVSGTTMYDSGNMTVTVTTSEISREEENFASVKTHTAMHRSVGDGV DRKHNLPVSKRKPLKKVARHRSRPPTKRDRNKGKKENKKMH" mobile_element 25254103..25254193 /note="source:scaffold_6_CACTA_0714 13420 13508" /mobile_element_type="transposon:TIR/CACTA" gene 25256382..25261374 /locus_tag="TCM_029981" /note="dbxref CacaoGD:Thecc1EG029981" mRNA join(25256382..25256786,25257511..25257586, 25257700..25257758,25258321..25258814,25258949..25259109, 25259194..25259397,25259709..25259946,25260186..25261374) /locus_tag="TCM_029981" /product="Calmodulin-binding protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038909t3" /inference="similar to AA sequence:Phytozome:GSVIVT01003207001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7898t2; inference alignment:Newbler:10:TSA:cgbaL_g12462t00001" mRNA join(25256390..25256786,25257511..25257586, 25257700..25257758,25258312..25258814,25258949..25259109, 25259194..25259397,25259709..25259946,25260186..25261253) /locus_tag="TCM_029981" /product="Calmodulin-binding protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038909t3" /inference="similar to AA sequence:Phytozome:POPTR_0004s03510.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12462t00001; inference alignment:Newbler:10:TSA:cgbaL_g12462t00001" CDS join(25256677..25256786,25257511..25257586, 25257700..25257758,25258312..25258814,25258949..25259109, 25259194..25259397,25259709..25259946,25260186..25260742) /locus_tag="TCM_029981" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG038909t3" /codon_start=1 /product="Calmodulin-binding protein isoform 1" /protein_id="EOY28404.1" /db_xref="Phytozome:POPTR_0004s03510.1" /db_xref="TAIR:AT5G57580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H7U0" /translation="MQTRYMERSNSMAREKRGLDSSSGDEGPDRKRPALASVIVEALK VDSLQKLCSSLEPILRRVVSEEVERALAKLGPAKLTAKKCSSSPKRIEGPDGRNLQVH FRSRLSLPLFTGGKVEGEQGAAIHIVLIDSNTRHVVTCGPESSVKLDVVVLEGDFNNE DDDNWTQEEFDSHVVKEREGKRPLLTGDLQVTLKDGVGTLGELTFTDNSSWIRSRKFR LGLKVASGSCEGIRIREAKTDAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFH KRLNKAGIFTVEDFLQLVVRDSQRLRNILGSGMSNKMWDVLVEHAKTCVLSGKLYVYY PDDIRTVGIVFNNIYELSGLIANGEYYAAESLSDNQKVYVDALVKKAYENWMHVVEYD GKSLLGSKEDDNAGASQANVPMDLQGYPNSINQQQTLPSLSVPVPSEQPPMDSGLNVG GYDDSMAARLSLQSQNVHLNAQTQLNGASFTLQNHLVSASQQVQLPGNDNELALGSSQ SSMPDFHGVGTSNIPTYRGVEDFFSEEEIRMRSHEMLENEDMQHLLRIFNMGSHGHTS FNATEDGYPHSSAYMSTPSLNYGFDNEASRSSGKAVVGWLKLKAALRWGIFIRKKAAE RRAHLVELDDS" CDS join(25256677..25256786,25257511..25257586, 25257700..25257758,25258321..25258814,25258949..25259109, 25259194..25259397,25259709..25259946,25260186..25260742) /locus_tag="TCM_029981" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG038909t3" /codon_start=1 /product="Calmodulin-binding protein isoform 2" /protein_id="EOY28405.1" /db_xref="Phytozome:GSVIVT01003207001" /db_xref="TAIR:AT5G57580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H7U0" /translation="MQTRYMERSNSMAREKRGLDSSSGDEGPDRKRPALASVIVEALK VDSLQKLCSSLEPILRRVVSEEVERALAKLGPAKLTANSSPKRIEGPDGRNLQVHFRS RLSLPLFTGGKVEGEQGAAIHIVLIDSNTRHVVTCGPESSVKLDVVVLEGDFNNEDDD NWTQEEFDSHVVKEREGKRPLLTGDLQVTLKDGVGTLGELTFTDNSSWIRSRKFRLGL KVASGSCEGIRIREAKTDAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRL NKAGIFTVEDFLQLVVRDSQRLRNILGSGMSNKMWDVLVEHAKTCVLSGKLYVYYPDD IRTVGIVFNNIYELSGLIANGEYYAAESLSDNQKVYVDALVKKAYENWMHVVEYDGKS LLGSKEDDNAGASQANVPMDLQGYPNSINQQQTLPSLSVPVPSEQPPMDSGLNVGGYD DSMAARLSLQSQNVHLNAQTQLNGASFTLQNHLVSASQQVQLPGNDNELALGSSQSSM PDFHGVGTSNIPTYRGVEDFFSEEEIRMRSHEMLENEDMQHLLRIFNMGSHGHTSFNA TEDGYPHSSAYMSTPSLNYGFDNEASRSSGKAVVGWLKLKAALRWGIFIRKKAAERRA HLVELDDS" gene complement(25261589..25262650) /locus_tag="TCM_029982" /note="dbxref CacaoGD:Thecc1EG029982" mRNA complement(25261589..25262650) /locus_tag="TCM_029982" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.52 coverage" CDS complement(25262407..25262619) /locus_tag="TCM_029982" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28406.1" /translation="MISKYKEIVFLHLHPKPSIDQSKSNTAKIPPTGDCKRTSRAAYG PKPRLCLCKRRTVTGRNNKIRSHTKL" gene complement(25263054..25272477) /locus_tag="TCM_029983" /note="dbxref CacaoGD:Thecc1EG029983" mRNA complement(join(25263054..25263728,25263847..25263928, 25264484..25264636,25264851..25265078,25265272..25265410, 25265816..25265920,25266449..25266541,25266620..25266702, 25267629..25267808,25268395..25268469,25268556..25268656, 25268740..25268900,25269143..25269294,25269767..25269847, 25270442..25270681,25270841..25270924,25271542..25271633, 25271736..25271847,25271977..25272477)) /locus_tag="TCM_029983" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03490.1" /inference="similar to AA sequence:Phytozome:GSVIVT01003206001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc682t7" mRNA complement(join(25263421..25263729,25263847..25263928, 25264484..25264636,25264851..25265078,25265272..25265410, 25265816..25265920,25266449..25266516,25267629..25267808, 25268395..25268469,25268556..25268656,25268815..25268900, 25269143..25269294,25269767..25269847,25270442..25270681, 25270841..25270924,25271542..25271633,25271736..25271847, 25271977..25272301)) /locus_tag="TCM_029983" /product="Transducin/WD40 repeat-like superfamily protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03490.1" /inference="similar to AA sequence:Phytozome:GSVIVT01003206001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7675t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc682t7" mRNA complement(join(25263548..25263728,25263847..25263928, 25264484..25264636,25264851..25265078,25265272..25265410, 25265816..25265920,25266449..25266516,25267629..25267808, 25268395..25268469,25268556..25268656,25268740..25268900, 25269143..25269294,25269767..25269847,25270442..25270681, 25270841..25270924,25271542..25271633,25271736..25271847, 25271977..25272336)) /locus_tag="TCM_029983" /product="Transducin/WD40 repeat-like superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03490.1" /inference="similar to AA sequence:Phytozome:GSVIVT01003206001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc682t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc682t7" mRNA complement(join(25263548..25263728,25263847..25263928, 25264484..25264636,25264851..25265078,25265272..25265410, 25265816..25265920,25266449..25266516,25266620..25266702, 25267629..25267808,25268395..25268469,25268556..25268656, 25268740..25268900,25269143..25269294,25269767..25269847, 25270442..25270681,25270841..25270924,25271542..25271633, 25271736..25271847,25271977..25272336)) /locus_tag="TCM_029983" /product="Transducin/WD40 repeat-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03490.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03490.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc682t3; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc682t7" mRNA complement(join(25263548..25263728,25263847..25263928, 25264484..25264636,25264749..25265078,25265272..25265410, 25265816..25265920,25266449..25266541,25266620..25266702, 25267629..25267808,25268395..25268469,25268556..25268656, 25268740..25268900,25269143..25269294,25269767..25269847, 25270442..25270681,25270841..25270924,25271542..25271633, 25271736..25271847,25271977..25272336)) /locus_tag="TCM_029983" /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03490.1" /inference="similar to AA sequence:Phytozome:GSVIVT01003206001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc682t6; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc682t7" CDS complement(join(25263634..25263728,25263847..25263928, 25264484..25264636,25264851..25265078,25265272..25265410, 25265816..25265920,25266449..25266516,25267629..25267808, 25268395..25268469,25268556..25268656,25268740..25268900, 25269143..25269294,25269767..25269847,25270442..25270681, 25270841..25270924,25271542..25271633,25271736..25271847, 25271977..25272045)) /locus_tag="TCM_029983" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 4" /protein_id="EOY28410.1" /db_xref="Phytozome:GSVIVT01003206001" /db_xref="TAIR:AT4G21530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65418" /translation="METDETPRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMVTEDSK ILLHRFNWQRLWTISPGRCITSLCWRPDGKAIAVGLEDGTISLHDVENGKLLRSLKSH TVAVVSLNWEEDGQVIRDDSVNNSKYEDRTSCFFPPAPRVPRMPGLVPGDTGFMDDSE DSFRELSNSSYQRFNILCSGDKDGSICFSIFGIFPIGKINIHKLSIPTPFANEQATYR LLNASISKVALSKDLCHSIVMCSGELNQDEVESQEGQLGVHGMRGLHCLLLDTSIFWK RKNELHQVAQQASNIEDLIEVIRTSLSVMCKQWSDAMHTFREKFDSLSSLIIDHGLDS SPQEEFLGLLGGARTSPPVHQFLVNSLGELGVKRVSKVVCGAGKELQHVVLDHLQPSA EIIGFRMGELRGLSRWRTRFRGIGLDETLINNATEKSGMLIVQVERFMRVLSSVVQQF LYDQDPVRPFLELSEVDIETDMETLQRVRELVHFGGFSDCEYLRRTLSEEFQQMESSF KEAFLMPFTTISQKILCKDVLPLFALPSSPASMSVTVPMSVTFYKDASTAMSSYQTHE HGYIDYISFQIPGDSSLDIANCIGISKGFMHSSSNITEDSASLEAVLLSVPDGYHCVD LSLYKEGQIVLLLNETTAASESFGESCMMIVQANDLPFVSISRSSCINRWNLNQLKDS VMYLQLENEKVRIIPHSVVAPLAVSASRGVACVFAARKRALVYILDEDEDDISDTE" CDS complement(join(25263634..25263728,25263847..25263928, 25264484..25264636,25264851..25265078,25265272..25265410, 25265816..25265920,25266449..25266541,25266620..25266702, 25267629..25267808,25268395..25268469,25268556..25268656, 25268740..25268900,25269143..25269294,25269767..25269847, 25270442..25270681,25270841..25270924,25271542..25271633, 25271736..25271847,25271977..25272045)) /locus_tag="TCM_029983" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY28407.1" /db_xref="Phytozome:GSVIVT01003206001" /db_xref="TAIR:AT4G21530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65418" /translation="METDETPRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMVTEDSK ILLHRFNWQRLWTISPGRCITSLCWRPDGKAIAVGLEDGTISLHDVENGKLLRSLKSH TVAVVSLNWEEDGQVIRDDSVNNSKYEDRTSCFFPPAPRVPRMPGLVPGDTGFMDDSE DSFRELSNSSYQRFNILCSGDKDGSICFSIFGIFPIGKINIHKLSIPTPFANEQATYR LLNASISKVALSKDLCHSIVMCSGELNQDEVESQEGQLGVHGMRGLHCLLLDTSIFWK RKNELHQVAQQASNIEDLIEVIRTSLSVMCKQWSDAMHTFREKFDSLSSLIIDHGLDS SPQEEFLGLLGGARTSPPVHQFLVNSLGELGVKRVSKVVCGAGKELQHVVLDHLQPSA EIIGFRMGELRGLSRWRTRFRGIGLDETLINNATEKSGMLIVQVERFMRVLSSVVQQF SNFFNWLLKCIKLLMQEPSDQLLPYNSELVVVFLKFLYDQDPVRPFLELSEVDIETDM ETLQRVRELVHFGGFSDCEYLRRTLSEEFQQMESSFKEAFLMPFTTISQKILCKDVLP LFALPSSPASMSVTVPMSVTFYKDASTAMSSYQTHEHGYIDYISFQIPGDSSLDIANC IGISKGFMHSSSNITEDSASLEAVLLSVPDGYHCVDLSLYKEGQIVLLLNETTAASES FGESCMMIVQANDLPFVSISRSSCINRWNLNQLKDSVMYLQLENEKVRIIPHSVVAPL AVSASRGVACVFAARKRALVYILDEDEDDISDTE" CDS complement(join(25263665..25263729,25263847..25263928, 25264484..25264636,25264851..25265078,25265272..25265410, 25265816..25265920,25266449..25266516,25267629..25267808, 25268395..25268469,25268556..25268656,25268815..25268900, 25269143..25269294,25269767..25269847,25270442..25270681, 25270841..25270924,25271542..25271633,25271736..25271847, 25271977..25272045)) /locus_tag="TCM_029983" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 5" /protein_id="EOY28411.1" /db_xref="Phytozome:GSVIVT01003206001" /db_xref="TAIR:AT4G21530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65418" /translation="METDETPRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMVTEDSK ILLHRFNWQRLWTISPGRCITSLCWRPDGKAIAVGLEDGTISLHDVENGKLLRSLKSH TVAVVSLNWEEDGQVIRDDSVNNSKYEDRTSCFFPPAPRVPRMPGLVPGDTGFMDDSE DSFRELSNSSYQRFNILCSGDKDGSICFSIFGIFPIGKINIHKLSIPTPFANEQATYR LLNASISKVALSKDLCHSIVMCSGELNQDEVESQEGQLGVHGMRGLHCLLLDTSIFWK RKNELHQVAQQASNIEDLIEVIRTSLSVMWLDSSPQEEFLGLLGGARTSPPVHQFLVN SLGELGVKRVSKVVCGAGKELQHVVLDHLQPSAEIIGFRMGELRGLSRWRTRFRGIGL DETLINNATEKSGMLIVQVERFMRVLSSVVQQFLYDQDPVRPFLELSEVDIETDMETL QRVRELVHFGGFSDCEYLRRTLSEEFQQMESSFKEAFLMPFTTISQKILCKDVLPLFA LPSSPASMSVTVPMSVTFYKDASTAMSSYQTHEHGYIDYISFQIPGDSSLDIANCIGI SKGFMHSSSNITEDSASLEAVLLSVPDGYHCVDLSLYKEGQIVLLLNETTAASESFGE SCMMIVQANDLPFVSISRSSCINRWNLNQLKDSVMYLQLENEKVRIIPHSVVAPLAVS GIQRRSLCFRCKKTCLGLHTG" CDS complement(join(25264839..25265078,25265272..25265410, 25265816..25265920,25266449..25266541,25266620..25266702, 25267629..25267808,25268395..25268469,25268556..25268656, 25268740..25268900,25269143..25269294,25269767..25269847, 25270442..25270681,25270841..25270924,25271542..25271633, 25271736..25271847,25271977..25272045)) /locus_tag="TCM_029983" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /protein_id="EOY28408.1" /db_xref="Phytozome:GSVIVT01003206001" /db_xref="TAIR:AT4G21530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65418" /translation="METDETPRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMVTEDSK ILLHRFNWQRLWTISPGRCITSLCWRPDGKAIAVGLEDGTISLHDVENGKLLRSLKSH TVAVVSLNWEEDGQVIRDDSVNNSKYEDRTSCFFPPAPRVPRMPGLVPGDTGFMDDSE DSFRELSNSSYQRFNILCSGDKDGSICFSIFGIFPIGKINIHKLSIPTPFANEQATYR LLNASISKVALSKDLCHSIVMCSGELNQDEVESQEGQLGVHGMRGLHCLLLDTSIFWK RKNELHQVAQQASNIEDLIEVIRTSLSVMCKQWSDAMHTFREKFDSLSSLIIDHGLDS SPQEEFLGLLGGARTSPPVHQFLVNSLGELGVKRVSKVVCGAGKELQHVVLDHLQPSA EIIGFRMGELRGLSRWRTRFRGIGLDETLINNATEKSGMLIVQVERFMRVLSSVVQQF SNFFNWLLKCIKLLMQEPSDQLLPYNSELVVVFLKFLYDQDPVRPFLELSEVDIETDM ETLQRVRELVHFGGFSDCEYLRRTLSEEFQQMESSFKEAFLMPFTTISQKILCKDVLP LFALPSSPASMSVTVPMSVTFYKDASTAMSSYQTHEHGYIDYISFQIPGDSSLDIANC IGISKGFMHSSSNITEDSASLEAVLLSVPDGYHCVDLSLYKVKT" CDS complement(join(25265391..25265410,25265816..25265920, 25266449..25266516,25266620..25266702,25267629..25267808, 25268395..25268469,25268556..25268656,25268740..25268900, 25269143..25269294,25269767..25269847,25270442..25270681, 25270841..25270924,25271542..25271633,25271736..25271847, 25271977..25272045)) /locus_tag="TCM_029983" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 3" /protein_id="EOY28409.1" /db_xref="Phytozome:POPTR_0004s03490.1" /db_xref="TAIR:AT4G21530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H223" /translation="METDETPRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMVTEDSK ILLHRFNWQRLWTISPGRCITSLCWRPDGKAIAVGLEDGTISLHDVENGKLLRSLKSH TVAVVSLNWEEDGQVIRDDSVNNSKYEDRTSCFFPPAPRVPRMPGLVPGDTGFMDDSE DSFRELSNSSYQRFNILCSGDKDGSICFSIFGIFPIGKINIHKLSIPTPFANEQATYR LLNASISKVALSKDLCHSIVMCSGELNQDEVESQEGQLGVHGMRGLHCLLLDTSIFWK RKNELHQVAQQASNIEDLIEVIRTSLSVMCKQWSDAMHTFREKFDSLSSLIIDHGLDS SPQEEFLGLLGGARTSPPVHQFLVNSLGELGVKRVSKVVCGAGKELQHVVLDHLQPSA EIIGFRMGELRGLSRWRTRFRGIGLDETLINNATEKSGMLIVQVERFMRVLSSVVQQF SNFFNWLLKCIKLLMQEPSDQLLPYNSFYMIKILLGPFWSCLKLILKLTWKHCKELEN WFILGDFQIVNICGGHYQRNFNRWSLVSRRLS" mobile_element complement(25273498..25273604) /note="source:scaffold_7_CACTA_0795 2858 2968" /mobile_element_type="transposon:TIR/CACTA" gene 25273935..25277215 /locus_tag="TCM_029984" /note="dbxref CacaoGD:Thecc1EG029984" mRNA join(25273935..25275397,25275656..25275829, 25276397..25277215) /locus_tag="TCM_029984" /product="F-box/RNI-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003200001" /inference="similar to AA sequence:Phytozome:POPTR_0001s33010.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05465t00001" CDS join(25274330..25275397,25275656..25275829, 25276397..25276741) /locus_tag="TCM_029984" /codon_start=1 /product="F-box/RNI-like superfamily protein, putative" /protein_id="EOY28412.1" /db_xref="Phytozome:POPTR_0001s33010.1" /db_xref="TAIR:AT3G28410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GFH4" /translation="MEDQKGSVCSEQSTGSVSSVLAVIQGQHRHSSHRNDLNFAQTRL KYPRFSPIFEYRSPPVDLISTLPDFLIQEILSFLPIEDAIKTSVLSRRWYPLWTQIPT LSFSHSSFCFKLAKFVEVVNRTLQRFSGHTIKNFSINFKFTESLASYVEEWILFAISH HVEKLCLVFDGGLVYAPFAESTPFWLPQFLYVNSYLKDLTLRQCVVSPDGNTSWPSLK VLSINYSRLNNEAIENILSGSPNLQNLKLHNCERIKRISSRSLEVLVVDGIYDPHEKE DCVTEISCPNLQSLSLLGFMYRRTYRLMHVSSLSKANLGFVMTIDKKDKYDYTKHRYI LRELLEKLCHVEELTVGTWCLQVLSIWEIKGISSPLSKRSCLVLDTEICEWDLPGIVS LLQSSPYLKKLVLNLSPCDNSKFEFDQEFFNSYELDGVAFLSSANWIFKSFLQSLEDI EITGFQPSSSGSKLLVELMQFLLKDATELKKVVIYEQSGALYRSWKSSWPDRNMGNFK RNQIMMIISNSIPVLKYSSG" gene 25277512..25280897 /locus_tag="TCM_029985" /note="dbxref CacaoGD:Thecc1EG029985" mRNA join(25277512..25277793,25278134..25278320, 25278408..25278538,25278613..25278682,25278798..25278863, 25279418..25279572,25279665..25279760,25280006..25280157, 25280241..25280324,25280409..25280897) /locus_tag="TCM_029985" /product="Riboflavin kinase/FMN hydrolase" /inference="alignment:exonerate- protein:2:ricco:29933.m001421" /inference="similar to AA sequence:ricco:29933.m001421" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08188t00001" CDS join(25277724..25277793,25278134..25278320, 25278408..25278538,25278613..25278682,25278798..25278863, 25279418..25279572,25279665..25279760,25280006..25280157, 25280241..25280324,25280409..25280534) /locus_tag="TCM_029985" /note="dbxref ricco:29933.m001421" /codon_start=1 /product="Riboflavin kinase/FMN hydrolase" /protein_id="EOY28413.1" /db_xref="TAIR:AT4G21470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84MD8" /translation="MANPLKKLVSCVVLDLDGTLLNTDGVVGEVLKGFLGKYGKQWDG REAQRIIGKTPLEAAAAIVEEYGLPCGKDEFLAGLHPIFSARLCNIKPLPGANRLLKH LSGHGVPMALASNSPRGNIESKISYHQGWKDYFSVVVGGDEVTAGKPNPEIFLEAAKR LNTEPSSCLVIEDSMPGVTAGKAAGIEVVAVPSVPKQAHLYTSADEVINSLLDLQPEK WGLPSFQDWVEGTLPIEPWYIGGPVIKGFGRGSKVLGIPTANLSTEGHSSLLSEHPSG VYFGWAGLSTRGVYKMVMSIGWNPYFNNAEKTVEPWLLHEFNEDFYGEELHLVIVGYI RPEVNFPSLESLIAKIQEDRKIAETALDLPLYSIHKDDPYLKSS" gene 25281039..25285032 /locus_tag="TCM_029986" /note="dbxref CacaoGD:Thecc1EG029986" mRNA join(25281039..25281318,25281405..25281467, 25281548..25281603,25281700..25281780,25281865..25281938, 25282173..25282255,25282578..25282684,25282770..25282912, 25283006..25283053,25283598..25283650,25283868..25283952, 25284039..25284105,25284201..25284311,25284509..25285032) /locus_tag="TCM_029986" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04280.1" /inference="similar to AA sequence:ricco:29681.m001313" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00461t00001" mRNA join(25281048..25281318,25281405..25281467, 25281548..25281603,25281700..25281780,25281865..25281938, 25282173..25282255,25282578..25282684,25282770..25282912, 25283006..25283053,25283868..25283952,25284039..25284105, 25284201..25284311,25284509..25284739) /locus_tag="TCM_029986" /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04280.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04280.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00461t00002; inference alignment:Newbler:10:TSA:cgbaB_g00461t00001" CDS join(25281116..25281318,25281405..25281467, 25281548..25281603,25281700..25281780,25281865..25281938, 25282173..25282255,25282578..25282684,25282770..25282912, 25283006..25283053,25283598..25283650,25283868..25283952, 25284039..25284105,25284201..25284311,25284509..25284573) /locus_tag="TCM_029986" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29681.m001313" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY28414.1" /db_xref="TAIR:AT4G21520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ06" /translation="MGEEERQEENQQSNSQIELTETSESTNQQGHEWPLKIKFDVPPY RTYHFHKQFRTGPNPNNFLKGVKWSPDGSCFLTSSEDNTLRLFSLPDNGSSDHVTACS SASEEDSYKAELVVSEGESVYDFCWYPYMSASDPVTCVFATTTRDHPIHLWDATSGLL RCTYRAYDAVDEITAAFSVSFNPAGTKVFAGYNKYVRVFDVHRPGRDFAQYSTLQGNK EGQTGIISAIAFCPAHTGMLATGSYSQTTAIYREDNMELLYVLHGQEGGVTQVQFSKD GNYLYTGARKDPYIMCWDIRKAVEVVYKLYRSSEDTNQRIAFDIESSGRHLGTGGQDG LVHIYDLQTGQWVSGFQVAADTVNGFSFHPFLPMATTSSGHRRFQMPEDDNEDLHLRG DENCASVWSFSYDFTAGEQC" CDS join(25281116..25281318,25281405..25281467, 25281548..25281603,25281700..25281780,25281865..25281938, 25282173..25282255,25282578..25282684,25282770..25282912, 25283006..25283053,25283868..25283885) /locus_tag="TCM_029986" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /protein_id="EOY28415.1" /db_xref="Phytozome:POPTR_0011s04280.1" /db_xref="TAIR:AT4G21520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H7T4" /translation="MGEEERQEENQQSNSQIELTETSESTNQQGHEWPLKIKFDVPPY RTYHFHKQFRTGPNPNNFLKGVKWSPDGSCFLTSSEDNTLRLFSLPDNGSSDHVTACS SASEEDSYKAELVVSEGESVYDFCWYPYMSASDPVTCVFATTTRDHPIHLWDATSGLL RCTYRAYDAVDEITAAFSVSFNPAGTKVFAGYNKYVRVFDVHRPGRDFAQYSTLQGNK EGQTGIISAIAFCPAHTGMLATGSYSQTTAIYREDNMELLYVLHGQEGGVTQVQFSKD GNYLYTGARKVIQII" gene 25286368..25289982 /locus_tag="TCM_029987" /note="dbxref CacaoGD:Thecc1EG029987" mRNA join(25286368..25286463,25287015..25287254, 25287335..25287386,25289196..25289280,25289366..25289432, 25289528..25289638,25289836..25289982) /locus_tag="TCM_029987" /product="Transducin/WD40 repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003189001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029986t1" /inference="similar to AA sequence:ricco:29681.m001313" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7697t1" mobile_element complement(25287002..25287078) /note="source:INTACT433_F212_scaffold_1-int 3059 3135" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(25287134..25287254,25287335..25287386, 25289196..25289280,25289366..25289432,25289528..25289638, 25289836..25289900) /locus_tag="TCM_029987" /note="dbxref ricco:29681.m001313; paralog of Thecc1EG029986t1" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein, putative" /protein_id="EOY28416.1" /db_xref="TAIR:AT4G21520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ06" /translation="MFEPIAMASVEIGNLEKRRKKNETESLGDHGHSPHPGNVQGNSS FNKVTKIQAILALWLYRSSEDTNQRIAFDFESSGRHLGTGGQDGLVHIYDLQTGQWVS GFQVAADTVNGFSIQPFLPMATTSSGHRRFQMPEDDNEDLHLRGDENCASVWGFSYDF TAGEQC" gene 25290845..25298266 /locus_tag="TCM_029988" /note="dbxref CacaoGD:Thecc1EG029988" mRNA join(25290845..25291415,25292262..25292541, 25293144..25293382,25296646..25296780,25297032..25298266) /locus_tag="TCM_029988" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04270.1" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc3568t1" mobile_element 25292094..25292207 /note="source:scaffold_1_CACTA_0029 7128 7238" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25292283..25292364 /note="source:scaffold_4_CACTA_0511 5716 5796" /mobile_element_type="transposon:TIR/CACTA" CDS join(25292439..25292541,25293144..25293382, 25296646..25296780,25297032..25297394) /locus_tag="TCM_029988" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28417.1" /translation="MASLGIENLEKQRKKNERESLGDHGHSPHPENVQGVEELDLNFS LANVLYKISSGFDDVKTMKTLKLCRCDLELLPPFQGLTSLRTPTLTKIKIAADSIKAV FSNFLSLETLELVLKTVSKIGFNRQSLIDKGVEELDLNSCLARIPDKISSHFEAIGTL KRFSFRTRPYWEDNLCPLVEQHPQLFNCLQFIKLEGFKSGDHEIEMVKYLLQRATGLE CLVLVSPNTNKYRSISAGNEPMCRKICQDCDISPKVVHFYGHNVDNSPAPQHSRTWHD DDL" gene complement(25293808..25295133) /locus_tag="TCM_029989" /note="dbxref CacaoGD:Thecc1EG029989" mRNA complement(join(25293808..25294009,25294095..25294736, 25294832..25295133)) /locus_tag="TCM_029989" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04270.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0004s03450.1" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(25293987..25294009,25294095..25294736, 25294832..25295078)) /locus_tag="TCM_029989" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28418.1" /db_xref="Phytozome:POPTR_0004s03450.1" /translation="MASLGIENLENPRKKNKRENLGEHGHSPHPGNVHGRTAVQPLSG FPDNVLAKIFSFLPIKQAIQASTVSPRFKQSWLVSQKQCAEETVENWLQTSIAKGVEE LDLNFSLANVLYKISSGFDDVKTMKILKLCRCDLELLPTFQGLTNLLTPTLTKIKIAA DSIKTVFSNCMFLETLKLVQCREIDHLEISLENLRSFKALKVGDCSDLRKIEIESPTL CSFYYSRDMILFKSRVKFQLHDLILDCKPLRRRFFQKRVERFFKKGGYLHEFWHVRVL STSSTLLEICDSMHSDSRICGYIPEVL" gene complement(25297028..25298257) /locus_tag="TCM_029990" /note="dbxref CacaoGD:Thecc1EG029990" mRNA complement(25297028..25298257) /locus_tag="TCM_029990" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.50 coverage" CDS complement(25297767..25297985) /locus_tag="TCM_029990" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28419.1" /translation="MVGLSRLCRPLLEHVSLFFCPLVGGDMATVTVTVSLQACSSFIG CWMEHVYGRSEFGDIQRMEFRSDVHASR" gene 25298600..25299760 /locus_tag="TCM_029991" /note="dbxref CacaoGD:Thecc1EG029991" mRNA join(25298600..25298934,25299042..25299116, 25299215..25299760) /locus_tag="TCM_029991" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29933.m001422" /inference="similar to AA sequence:ricco:29933.m001422" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06281t00001" CDS join(25298653..25298934,25299042..25299116, 25299215..25299412) /locus_tag="TCM_029991" /note="dbxref ricco:29933.m001422" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY28420.1" /db_xref="TAIR:AT4G21510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ08" /translation="MEMASGRVYRSPSLRLTHGGVNEEEELGLGFVRYTRGLGRKRIE ISNEMEESLPLDSATEFPLLKRQCSERMVMMMIDDYHEKSALESLPQDVLIRIICGVD HKDLKQLFNVSKSIREATVIAKQSHFAYSTPTKIKAFRTSIDFEESSDLDDIEAPNAP KLKLRFQRKINRRKLADISVALFA" mobile_element 25301530..25301650 /note="source:CACAO_Again_on_E207_scaffold_9 311 427" /mobile_element_type="transposon:TIR/hAT" gene 25301988..25310461 /locus_tag="TCM_029992" /note="dbxref CacaoGD:Thecc1EG029992" mRNA join(25301988..25302333,25302602..25302692, 25302942..25303636,25303827..25304000,25304118..25304226, 25304349..25304407,25304478..25304607,25304706..25304782, 25304886..25305639,25305837..25305912,25308868..25310461) /locus_tag="TCM_029992" /product="Heterogeneous nuclear ribonucleoprotein U-like protein 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003190001" /inference="similar to AA sequence:Phytozome:GSVIVT01003190001" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage" CDS join(25302091..25302333,25302602..25302692, 25302942..25303636,25303827..25304000,25304118..25304226, 25304349..25304407,25304478..25304607,25304706..25304782, 25304886..25305639,25305837..25305912,25308868) /locus_tag="TCM_029992" /codon_start=1 /product="Heterogeneous nuclear ribonucleoprotein U-like protein 1, putative" /protein_id="EOY28421.1" /db_xref="Phytozome:GSVIVT01003190001" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C821" /translation="MHGRFDLRLTISTRRKEEIQDFEFRALSLLLSPFKNQRKSHFMA STRGDLPHSETEAEQEPPDKTAKTNDKDDTEKKKQRVSYAVIITDGNWSGWVEVKLLT FFELSMVGRDFIIEDDLIGSARHDQGFAYCWSGARANVGITVGKYCFGCKSLSTQPVE MEGTPPDQQHVCRLGISRGGVEVGRLGETRNSFGFEGTGKFSNAENFSVYGEKFGVGE TIVCAVDLASKPLASIGFVKNGKWLGTAKQFNTDPEDLGVVDSPLRKLPWKSAVFPHV LLKNVVVQLQFSFEDGLVPENGYKPWASAFEDGNVIKGPDLHSETDCEVMMMVGLHAA GKTTWAKKWIRRTYGEIPDPWTGLVSQISDFLISRAAKIRRNYVFDQLNICKSRRNRK LRLFERFRKIAVVVFPKPEELNLRIAKKLEGTGTGLPADEVNNMLAKYTLPLTKNMPG SDELFDEVKFVELDRGESQRYLDEMKRSVESASVPYSQQNTVGSLDSCSSVVEGHWHP SLHSAPPPLNYGYQMPNQVYLTYPGVQALPEGYQLYQVSQQPVPYWPYLYNGSSSIPG ENVYSTYPGVQAYSEWYQVYQVQQQPATYGPSLHNGSSSIPRKNVYSTDPGVQAYSEW YQVYQVQEQPAPYGPSLHNGSSSIPRENVYSTDPGVQAYSEGYQVYQVPQQPAPYWPY LDNGSSSIPRENAGSFGSYHPIPGDGSNHYQSPYNGVDNIHGRPASSCSSSMVEPSPV RSDYHVGQCSSGGGLEHASFQAPRPPIFEQSPPPSTDGSRYPTPRCSPPNTQHTQGYP PSHP" gene 25308793..25309659 /locus_tag="TCM_029993" /note="dbxref CacaoGD:Thecc1EG029993" mRNA 25308793..25309659 /locus_tag="TCM_029993" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g07300.1" /inference="similar to AA sequence:ricco:29933.m001425" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12970t00001" CDS 25308905..25309639 /locus_tag="TCM_029993" /note="dbxref ricco:29933.m001425" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28422.1" /translation="MEEDENENPWEYLKSIEIVTMVSSSKTISNLSFLSSNDPLLSFV ITLYILILLYFPQSFSLKIFFFPVLVLTASLLLSLLRLGAIQRTQTETKEKRSLAEAE AEKTDFSQQELKWSTCKKDPELVMQSFEETFVEWDVGAPLEVIYEGHEGEEEDPNENV SNPTRVIERYPSLSLYYPESDSDSSSSETDYLAIGEWVSSEKMCYRWEEEDREGLIEI ALDKRDLDFHGEEENLIEIDISSVKD" gene 25312854..25317399 /locus_tag="TCM_029994" /note="dbxref CacaoGD:Thecc1EG029994" mRNA join(25312854..25313034,25313138..25313266, 25314011..25314332,25314438..25314644,25314881..25315131, 25315349..25315568,25315710..25315814,25315916..25316188, 25316284..25316405,25316519..25316638,25316750..25317399) /locus_tag="TCM_029994" /product="NAD(P)H dehydrogenase B2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29933.m001426" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007949t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400038843" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc581t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc581t1" mRNA join(25312854..25313034,25313138..25313266, 25314011..25314332,25314438..25314644,25314881..25315131, 25315349..25315568,25315710..25315814,25315916..25316069, 25316518..25316638,25316750..25317399) /locus_tag="TCM_029994" /product="NAD(P)H dehydrogenase B2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29933.m001426" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007946t1" /inference="similar to AA sequence:TAIR:AT4G05020.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc517t3; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc581t1" CDS join(25313178..25313266,25314011..25314332, 25314438..25314644,25314881..25315131,25315349..25315568, 25315710..25315814,25315916..25316188,25316284..25316405, 25316519..25316638,25316750..25316837) /locus_tag="TCM_029994" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG007949t1" /codon_start=1 /product="NAD(P)H dehydrogenase B2 isoform 1" /protein_id="EOY28423.1" /db_xref="Phytozome:PGSC0003DMP400038843" /db_xref="TAIR:AT4G05020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S9T5" /translation="MRTFDFLGRLSRAFQDYPSLSRIIVVSTISGGGLIAYAEANTYN GSRGHIAHADAITSNGAHGIASSEAVPKKKKVVLLGTGWAGMSFLKDLNNPSYEVEVV SPRNFFVFTPLLPSVTCGKVEARSIVEPIRNIIRKKNVDISFSEAECVKIDPQNKKIY CRATVNSKLKGEEEFAVDYDYLIIAVGAQVNTFNTPGVEQNCHFLKEVEDAQKIRKNV IESFEKASLPNLSDEERKKILHFVIVGGGPTGVEFAAELYDFVNEDVVKLYPKVREFV KITLLEATDHILNMFDKRITNFAEGKFGRDGIDVKLGSMVTKIDDNEISTKARGNGNT TNTPYGMVLWSTGIGPRPLIKEFMKQIGQGNRRALATDEWLRVEGFDTIYALGDCATI NQRKVMEDISEIFKKADKDESGTLTVKEFQEIIDDICERYPQVELYLKSKQVRNIVDL LKEAKGDAAKESIELNIEEFKSALSQVDSQMKNLPATAQVANQQGAYLAKCFNRMEEC EKNPEGPARFRGTGRHRFHPFRYRHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYS VYASKQVSWRTRALVVSDWVRRFIFGRDTSGI" CDS join(25313178..25313266,25314011..25314332, 25314438..25314644,25314881..25315131,25315349..25315568, 25315710..25315814,25315916..25316069,25316518..25316638, 25316750..25316837) /locus_tag="TCM_029994" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG007946t1" /codon_start=1 /product="NAD(P)H dehydrogenase B2 isoform 2" /protein_id="EOY28424.1" /db_xref="TAIR:AT4G05020.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JGL5" /translation="MRTFDFLGRLSRAFQDYPSLSRIIVVSTISGGGLIAYAEANTYN GSRGHIAHADAITSNGAHGIASSEAVPKKKKVVLLGTGWAGMSFLKDLNNPSYEVEVV SPRNFFVFTPLLPSVTCGKVEARSIVEPIRNIIRKKNVDISFSEAECVKIDPQNKKIY CRATVNSKLKGEEEFAVDYDYLIIAVGAQVNTFNTPGVEQNCHFLKEVEDAQKIRKNV IESFEKASLPNLSDEERKKILHFVIVGGGPTGVEFAAELYDFVNEDVVKLYPKVREFV KITLLEATDHILNMFDKRITNFAEGKFGRDGIDVKLGSMVTKIDDNEISTKARGNGNT TNTPYGMVLWSTGIGPRPLIKEFMKQIGQGNRRALATDEWLRVEGFDTIYALGDCATI NQRKVMEDISEIFKKADKDESGTLTVKEFQEIIDDICERYPQVELYLKSKQVRNIVDR YRHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWVRR FIFGRDTSGI" gene 25318449..25332657 /locus_tag="TCM_029995" /note="dbxref CacaoGD:Thecc1EG029995" mRNA join(25318449..25319040,25319221..25319317, 25319487..25320158,25321222..25321714,25322050..25323070) /locus_tag="TCM_029995" /product="F-box/RNI-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029996t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03400.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01169t00001" mRNA join(25319492..25320158,25321222..25321714, 25322050..25322716,25330986..25331081,25331462..25332657) /locus_tag="TCM_029995" /product="F-box/RNI-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029996t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03400.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01169t00001; inference alignment:Newbler:10:TSA:cgbaP2_g01169t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc259t11" CDS join(25319647..25320158,25321222..25321714, 25322050..25322716,25330986..25331081,25331462..25331553) /locus_tag="TCM_029995" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029996t1" /codon_start=1 /product="F-box/RNI-like superfamily protein isoform 2" /protein_id="EOY28426.1" /db_xref="Phytozome:POPTR_0004s03400.1" /db_xref="TAIR:AT3G62980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8RF91" /translation="MESSEVNMSRDSSQLDESARGSSSPDVALERVLSLLKSHRDRSS VSLVCKDWYNAERWSRTHVFIGNCYSVSPEIVARRFPKIRSVTLKGKPRFSDFNLVPQ NWGADIHPWLVVFAAKYPFLEELRLKRMTISDESLEFLAVSFPNFKALSLLSCDGFST DGLAIIATHCKNLTELDIQENGIDDKGGSWLSCFPESFTSLEALNFANLTSDINFDAL ERLVGRCKSMRVLKVNRSISLEQLQRLLVNALQLAELGTGSFSQELTFRQYEELESTL SSSKNIHTLSGLWEAKGLHLPALYPVCTHLTFLNLSYAPLQSGELAELLAHCPQLRRL WVLDTVEDEGLEAVGSSCPLLEELRVFPADPFDEDIIHGVTEAGFVAVSYGCPRLHSV LYFCRQMTNAAVATIVQNCPDFTHFRLCIMDPGQPDYLTNEPMDEAFGAVVKTCTKLQ RLSVSGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCVLTGCPKLRKLEIRDCPF GNAALLSGLDKYESMRSLWMSACNVTMDGCRQLAREMPRLNVEVMKEDGMMVFKQIKY MFIVLLQAQGGMRHHLCLLSEMLAVKSYAGDDIPFCRHRVGLMFIQQSNSVKA" CDS join(25319647..25320158,25321222..25321714, 25322050..25322805) /locus_tag="TCM_029995" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029996t1" /codon_start=1 /product="F-box/RNI-like superfamily protein isoform 1" /protein_id="EOY28425.1" /db_xref="Phytozome:POPTR_0004s03400.1" /db_xref="TAIR:AT3G62980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8RF91" /translation="MESSEVNMSRDSSQLDESARGSSSPDVALERVLSLLKSHRDRSS VSLVCKDWYNAERWSRTHVFIGNCYSVSPEIVARRFPKIRSVTLKGKPRFSDFNLVPQ NWGADIHPWLVVFAAKYPFLEELRLKRMTISDESLEFLAVSFPNFKALSLLSCDGFST DGLAIIATHCKNLTELDIQENGIDDKGGSWLSCFPESFTSLEALNFANLTSDINFDAL ERLVGRCKSMRVLKVNRSISLEQLQRLLVNALQLAELGTGSFSQELTFRQYEELESTL SSSKNIHTLSGLWEAKGLHLPALYPVCTHLTFLNLSYAPLQSGELAELLAHCPQLRRL WVLDTVEDEGLEAVGSSCPLLEELRVFPADPFDEDIIHGVTEAGFVAVSYGCPRLHSV LYFCRQMTNAAVATIVQNCPDFTHFRLCIMDPGQPDYLTNEPMDEAFGAVVKTCTKLQ RLSVSGLLTDLTFEYIGRYAKNLETLSVAFAGSSDWGMQCVLTGCPKLRKLEIRDCPF GNAALLSGLDKYESMRSLWMSACNVTMDGCRQLAREMPRLNVEVMKEDGSDDSEADKV YVYRSIAGPRRDAPPFVLTL" mobile_element 25324937..25325103 /note="source:CACAO_on_S_E390_scaffold_9 2170 2351" /mobile_element_type="transposon:TIR/Mutator" gene 25326787..25331568 /locus_tag="TCM_029996" /note="dbxref CacaoGD:Thecc1EG029996" mRNA join(25326787..25327893,25329161..25329653, 25330318..25331081,25331462..25331568) /locus_tag="TCM_029996" /product="F-box/RNI-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03400.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029995t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03400.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13028t00001" CDS join(25327382..25327893,25329161..25329653, 25330318..25331073) /locus_tag="TCM_029996" /note="paralog of Thecc1EG029995t1" /codon_start=1 /product="F-box/RNI-like superfamily protein" /protein_id="EOY28427.1" /db_xref="Phytozome:POPTR_0004s03400.1" /db_xref="TAIR:AT3G62980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8RF91" /translation="MESCELKRFKDSPNSDESARRSSFPDEVLERVLSLLKSHRDRSS VSLVCKDWYNAERWSRAHVFIGNCYSVSPEIVARRFPKIRSVTLKGKPRFSDFNLVPQ NWGADIHAWLVVFAAKYPFLEELRLKRMTISDESLEFLAVSFPNFKALSLLSCDGFST NGLAAIATHCKNLTELDIQENGIDDKGGSWLSCFPESFTSLEALNFANLTSDINFDAL ERLVGRCKSMRVLKVNRSISLEQLQRLLVNASQLAELGTGSFSQELTFRQYEELESTL GSCKNIHTLSGLWEAKGLYLPALYSLCTHLTFLNLSYAPLQSGELAKLLTHCPQLRRL WVLDTVEDKGLEAVGLNCPLLEELRVFPADPFDEDIIHGVTEAGFVAVSRGCPRLHYV LYFCRQMTNAAVATIVQNCPDFTHFRLCIMDPGQPDYLTNEPMDEAFGAVVKTCSKLQ RLSVSGLLTDLTFEYIGSYAKNLETLSVAFAGSSDWGMQCVLRGCPKLRKLEIRDCPF GNAALLSGLEKYESMRSLWMSACNVTMNACRLLAKEMPRLNVEVMKEDGSDGIQADKV YVYRSIAGPRRDAPPSVLTL" gene complement(25331435..25332613) /locus_tag="TCM_029997" /note="dbxref CacaoGD:Thecc1EG029997" mRNA complement(join(25331435..25331847,25331949..25332304)) /locus_tag="TCM_029997" /product="Dynein light chain type 1 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031304t1" /inference="similar to AA sequence:frave:gene30708" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03002t00002; alternateUTRof:Thecc1EG029997t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc264t17_C1" mRNA complement(join(25331583..25331847,25331949..25332613)) /locus_tag="TCM_029997" /product="Dynein light chain type 1 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031304t1" /inference="similar to AA sequence:frave:gene30708" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(join(25331656..25331847,25331949..25332086)) /locus_tag="TCM_029997" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene30708; paralog of Thecc1EG031304t1" /codon_start=1 /product="Dynein light chain type 1 family protein isoform 1" /protein_id="EOY28428.1" /db_xref="TAIR:AT4G27360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H215" /translation="MLEGKAIVGETDMLHKMQQDALHLAAKALDIFEATESTDIARFI KKDFDRTYGSGWQCVVGTDFSSFVTHCHGCFIHFCVGSLAILLFRGAVNQADEANLLP NFEALHA" CDS complement(join(25331656..25331847,25331949..25332086)) /locus_tag="TCM_029997" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene30708; paralog of Thecc1EG031304t1" /codon_start=1 /product="Dynein light chain type 1 family protein isoform 1" /protein_id="EOY28429.1" /db_xref="TAIR:AT4G27360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H215" /translation="MLEGKAIVGETDMLHKMQQDALHLAAKALDIFEATESTDIARFI KKDFDRTYGSGWQCVVGTDFSSFVTHCHGCFIHFCVGSLAILLFRGAVNQADEANLLP NFEALHA" gene 25337584..25340082 /locus_tag="TCM_029999" /note="dbxref CacaoGD:Thecc1EG029999" mRNA 25337584..25340082 /locus_tag="TCM_029999" /product="ARM repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03380.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03380.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaL_g04866t00001" CDS 25337985..25339739 /locus_tag="TCM_029999" /codon_start=1 /product="ARM repeat superfamily protein" /protein_id="EOY28430.1" /db_xref="Phytozome:POPTR_0004s03380.1" /db_xref="TAIR:AT1G61350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H7S7" /translation="MNSKMGEEEKPKQQQHQNSTESFTAMKSSLRQAIEVISSLISLS HSIRVFTVKWQLIRKKLEELSSGLMAIENCDSSENTAVFSGLIPSILVTVNECYDLAR RCVDLSYSGKLLMQSDLDVLVAKFDRHVKNLSEIYTAGILTQGFAIVVSRPGPGACKD DMRFYIRDLLTRMKIGDIEMKRQALVNLHDVVGEDERYVKLVVEVGDVVNVLVGFLDS PEMEIQEEASKIVSLLSGFDLYKCVLVGAGIIGPLIRVLESGGDVGKEGAARCLQKLT VNSDNAWSVSAHGGVTALLKICSTGDCGGELIGPACGVLRNLVGVEEIKRFMVEEGAI STFIKLARSREETVQINSIEFLQNMASGDESVRQTVVKEGGVRALVRVLDPKSATSSK TREVALRAIENLCFCSQNYINMLMIFGFIDQLYFFLRNGEVSVQELALKVTFRLCGTS DEAKKAMGDAGIMPELVKLLDAKSYEVREMATEALSSLVSLPKNRKRFVQDDRNIGFL LQLLDQEEGMPGNKKLLLSILMSLTSCNSGRRKIASSGYLKNVEKLAEAEVSDAKRLV RKLSTNRFRSMLSGFWHS" gene 25343854..25344841 /locus_tag="TCM_030000" /note="dbxref CacaoGD:Thecc1EG030000" mRNA 25343854..25344841 /locus_tag="TCM_030000" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.55 coverage" gene complement(25343994..25345400) /locus_tag="TCM_030001" /note="dbxref CacaoGD:Thecc1EG030001" mRNA complement(join(25343994..25345081,25345164..25345400)) /locus_tag="TCM_030001" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.54 coverage" CDS 25344042..25344257 /locus_tag="TCM_030000" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28431.1" /translation="MQSQKKKRFANCKIVSSIELSINFSRLSLCKDDITNEALHFYEL VDVKLPTQRSVGRNSCLVSPLSCKIIV" CDS complement(join(25344964..25345081,25345164..25345297)) /locus_tag="TCM_030001" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28432.1" /translation="MQRNQKNTLFFGLSFCNKRTANDLEKQKGFSNFFQTSKIAVAML MNLRCSWFSRLLNFMAMGAVLQTHRSSKSRDLLVNIQKP" gene 25349787..25353213 /locus_tag="TCM_030002" /note="dbxref CacaoGD:Thecc1EG030002" mRNA join(25349787..25350121,25350220..25350542, 25351506..25352135,25352232..25352299,25352315..>25352370) /locus_tag="TCM_030002" /product="Sugar transporter 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036440001" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016178t1" /inference="similar to AA sequence:ricco:29933.m001432" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1189t11; inference alignment:Newbler:10:TSA:cgbaP2_g04244t00001" mRNA join(25349829..25350121,25350220..25350542, 25351506..25352135,25352232..25353213) /locus_tag="TCM_030002" /product="Sugar transporter 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016178t1" /inference="similar to AA sequence:ricco:29933.m001432" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04244t00001" CDS join(25349989..25350121,25350220..25350542, 25351506..25352135,25352232..25352711) /locus_tag="TCM_030002" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29933.m001432; paralog of Thecc1EG016178t1" /codon_start=1 /product="Sugar transporter 1 isoform 1" /protein_id="EOY28433.1" /db_xref="TAIR:AT1G11260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P23586" /translation="MPAVGGIGPGTGKEYPGNLTLFVTVTCIVAATGGLIFGYDIGIS GGVTTMTPFLQKFFRKVWEKKEADKSTNQYCQYDSPTLTMFTSSLYLAALLASLVAST VTRKLGRKLSMLLGGLLFFAGALINGFAKAVWMLIVGRMLLGFGVGFANQSVPLYLSE MAPYRYRGALNIGFQLSITVGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVG SLFLPDTPNSMIERGQTEEAREKLRRIRGIDDVDEEFRDLVAASDASKLVEHPWRNLL QRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTIGFGDDASLMSAVITGVVNVAA TLVSIYGVDKWGRRFLFLEGGTQMLICQAVVAACIGAKFGVNGNPGDLPKWYAIVVVL FICIYVSGFAWSWGPLGWLVPSEIFPLEIRSAAQSINVSVNMLFTFAVAQVFLSMLCH LKFGLFLFFAFFVVLMSIFIYFFLPETKGIPIEEMNQVWKSHWYWSRFVEGLDYPNGG VEMGKGGQGSKNV" CDS join(25349989..25350121,25350220..25350542, 25351506..25352135,25352232..25352299,25352315..>25352369) /locus_tag="TCM_030002" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29933.m001432; paralog of Thecc1EG016178t1" /codon_start=1 /product="Sugar transporter 1 isoform 2" /protein_id="EOY28434.1" /db_xref="TAIR:AT1G11260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P23586" /translation="MPAVGGIGPGTGKEYPGNLTLFVTVTCIVAATGGLIFGYDIGIS GGVTTMTPFLQKFFRKVWEKKEADKSTNQYCQYDSPTLTMFTSSLYLAALLASLVAST VTRKLGRKLSMLLGGLLFFAGALINGFAKAVWMLIVGRMLLGFGVGFANQSVPLYLSE MAPYRYRGALNIGFQLSITVGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVG SLFLPDTPNSMIERGQTEEAREKLRRIRGIDDVDEEFRDLVAASDASKLVEHPWRNLL QRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTIGFGDDASLMSAVITGVVNVAA TLVSIYGVDKWGRRFLFLEGGTQMLICQAVVAACIGAKFGVNGNPGDLPKWVLFICIY VSGFAWSWGPL" gene 25353412..25354705 /locus_tag="TCM_030003" /note="dbxref CacaoGD:Thecc1EG030003" mRNA join(25353412..25353668,25353768..25354705) /locus_tag="TCM_030003" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS join(25353419..25353668,25353768..25353940) /locus_tag="TCM_030003" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28435.1" /translation="MRKLIVIMKLWKSRTLEFVFKGNMVDPIQLVMIVVLQRGDLLPL SHMILVDSVSFVRFLATVFITQLLANAARQVWSQVHCLCGKKPWAVMKNQQMLQMPSL IALRRWFKQRLHVFQHIAAGCMNTELCVTWDLNESMLV" gene complement(25355836..25356534) /locus_tag="TCM_030004" /note="dbxref CacaoGD:Thecc1EG030004" mRNA complement(join(25355836..25356216,25356372..25356534)) /locus_tag="TCM_030004" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s04060.1" /inference="similar to AA sequence:Phytozome:POPTR_0007s04060.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc4530t1" CDS complement(join(25356032..25356216,25356372..25356471)) /locus_tag="TCM_030004" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28436.1" /db_xref="Phytozome:POPTR_0007s04060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HER2" /translation="MAKSNNKIAMLTNFVLIVALLVIVSMAESREIGILKGKQSAPSC DKVYGVASGDTCFGVTQMFNLTTAFFDSVNPNLNCTSLFVGQWLCIAGSA" gene complement(25357145..25357777) /locus_tag="TCM_030005" /note="dbxref CacaoGD:Thecc1EG030005" mRNA complement(25357145..25357777) /locus_tag="TCM_030005" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400038838" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7821t1" CDS complement(25357455..25357700) /locus_tag="TCM_030005" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28437.1" /translation="MSYLSRVCMAASVAAVEGHRDCSSKWNSGLRPINASKRRYASTA SSSDDRLRARGKPKEDNGNQSEESLQRVMYLNCWTQS" gene complement(25358391..25361609) /locus_tag="TCM_030006" /note="dbxref CacaoGD:Thecc1EG030006" mRNA complement(join(25358391..25358939,25359034..25359153, 25359383..25359460,25360172..25360290,25360437..25360518, 25360682..25360752,25361173..25361609)) /locus_tag="TCM_030006" /product="PapD-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g32050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007939t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s04150.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04406t00001" CDS complement(join(25358880..25358939,25359034..25359153, 25359383..25359460,25360172..25360290,25360437..25360518, 25360682..25360752,25361173..25361434)) /locus_tag="TCM_030006" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG007939t1" /codon_start=1 /product="PapD-like superfamily protein isoform 1" /protein_id="EOY28438.1" /db_xref="Phytozome:POPTR_0011s04150.1" /db_xref="TAIR:AT4G21450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYN2" /translation="MAIETEQKSPSDGKVWGFFKLPFLQIGNNTSTTSSSSSASHLYG QSQPHVEGSNHQGSANSVSSVAKSLLPTRRRLKLDPGSKLYFPYEPGKQVRSAVRIKN TSKSFVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVEHPENNEKPMDQKSKVK FKIMSLKVKGPMDYVPELFDEQKDQVAIEQILRVVFLDPGRPCPALEKLKRQLADADA ALEARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSA" mRNA complement(join(25358911..25358939,25359030..25359153, 25359383..25359477,25360176..25360290,25360437..25360518, 25360682..25360752,25361173..25361557)) /locus_tag="TCM_030006" /product="Vesicle-associated protein 4-2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g32050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007939t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400038731" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc76t10; inference alignment:Newbler:10:TSA:cgbaP1_g04406t00001" mRNA complement(join(25358911..25359153,25359383..25359477, 25360176..25360290,25360437..25360518,25360682..25360752, 25361173..25361557)) /locus_tag="TCM_030006" /product="Vesicle-associated protein 4-2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g32050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007939t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400038731" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc76t5; alternateUTRof:Thecc1EG030006t2; inference alignment:Newbler:10:TSA:cgbaP1_g04406t00001" CDS complement(join(25359456..25359477,25360176..25360290, 25360437..25360518,25360682..25360752,25361173..25361434)) /locus_tag="TCM_030006" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG007939t1" /codon_start=1 /product="Vesicle-associated protein 4-2 isoform 2" /protein_id="EOY28439.1" /db_xref="Phytozome:PGSC0003DMP400038731" /db_xref="TAIR:AT4G21450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYN2" /translation="MAIETEQKSPSDGKVWGFFKLPFLQIGNNTSTTSSSSSASHLYG QSQPHVEGSNHQGSANSVSSVAKSLLPTRRRLKLDPGSKLYFPYEPGKQVRSAVRIKN TSKSFVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVEHPENNEKPMDQKSKVK FKIMSLKVKGPMDYVPECLFFAV" CDS complement(join(25359456..25359477,25360176..25360290, 25360437..25360518,25360682..25360752,25361173..25361434)) /locus_tag="TCM_030006" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG007939t1" /codon_start=1 /product="Vesicle-associated protein 4-2 isoform 2" /protein_id="EOY28440.1" /db_xref="Phytozome:PGSC0003DMP400038731" /db_xref="TAIR:AT4G21450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYN2" /translation="MAIETEQKSPSDGKVWGFFKLPFLQIGNNTSTTSSSSSASHLYG QSQPHVEGSNHQGSANSVSSVAKSLLPTRRRLKLDPGSKLYFPYEPGKQVRSAVRIKN TSKSFVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVEHPENNEKPMDQKSKVK FKIMSLKVKGPMDYVPECLFFAV" gene complement(25362448..25364630) /locus_tag="TCM_030007" /note="dbxref CacaoGD:Thecc1EG030007" mRNA complement(join(25362448..25362697,25362797..25362871, 25362977..25363172,25364253..25364630)) /locus_tag="TCM_030007" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03330.1" /inference="similar to AA sequence:Phytozome:GSVIVT01003660001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15097t00001" CDS complement(join(25362644..25362697,25362797..25362871, 25362977..25363172,25364253..25364497)) /locus_tag="TCM_030007" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28441.1" /db_xref="Phytozome:GSVIVT01003660001" /db_xref="TAIR:AT4G21445.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I737" /translation="MSLRYAGRVFYQAGMRMMQGMKDQASKCESNLRSLKDSASSASS SSSSKQSWRFSNSLDSGAFKAAKNERLKQAEESLRTVIPRKLQKLTNTKARFSPGKLY IIRGCSSQGEGEKKTERRSFLTLEEAGLVEISGLSTHERFLCRLTISSLNLLRVISEQ EGCSIEELNAGRVTRFIIRNGSSDHGLGS" mobile_element complement(25365313..25365381) /note="source:scaffold_1_CACTA_0005 6289 6354" /mobile_element_type="transposon:TIR/CACTA" gene 25365534..25369635 /locus_tag="TCM_030008" /note="dbxref CacaoGD:Thecc1EG030008" mRNA join(25365534..25365808,25365914..25366010, 25366193..25366295,25366617..25366828,25367075..25367134, 25367644..25368035,25368226..25368304,25368375..25368425, 25369015..25369635) /locus_tag="TCM_030008" /product="Inositol monophosphatase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03320.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03320.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06192t00001" mRNA join(25365534..25365803,25365914..25366010, 25366193..25366295,25366617..25366828,25367075..25367134, 25367644..25368035,25368226..25368304,25368375..25368425, 25369015..25369635) /locus_tag="TCM_030008" /product="Inositol monophosphatase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03320.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03320.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:PASA:2:TSA:puevd3b029025t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g06192t00001" CDS join(25365693..25365808,25365914..25366010, 25366193..25366295,25366617..25366828,25367075..25367134, 25367644..25368035,25368226..25368304,25368375..25368425, 25369015..25369164) /locus_tag="TCM_030008" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Inositol monophosphatase family protein isoform 1" /protein_id="EOY28442.1" /db_xref="Phytozome:POPTR_0004s03320.1" /db_xref="TAIR:AT4G05090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M0Y6" /translation="MIPATDLHLLHSSPGFSAIRFFPCHRSRTPLRGRFFTVRSSLPF PNEKAKYHKELEAAMEVVERACRLCLDVQRSLFSDEGRILEKNDQTPVTVADFGVQAL VSLELSKLFPSIPLVAEEDSGFLRSNNLVDPVVSAVSDKTSFDEESLSRADVLEAIDR GGKDAFAFGTKPATYWILDPIDGTRGFVKGSQALYVVGLSLVVEGEIVLGAMGCPNWV VDTSYRSTADVQGYKNSSPGLGIIMVAHVGCGTWTKRLKDMLDSSTKMSSDWTRCFVD GCCLVPEARFCISDSQTWESLPLSILYEARIDADDDIRDKEIRLLPTCCGSLCKYLMV ASGRASVFILQARSQKVIKAWDHAVGVICVHEAGGKVTDWTGSELDLAADQVERRNIY PAGGVLVTNGNIHDQILEMISSNSTVV" CDS join(25365972..25366010,25366193..25366295, 25366617..25366828,25367075..25367134,25367644..25368035, 25368226..25368304,25368375..25368425,25369015..25369164) /locus_tag="TCM_030008" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Inositol monophosphatase family protein isoform 2" /protein_id="EOY28443.1" /db_xref="Phytozome:POPTR_0004s03320.1" /db_xref="TAIR:AT4G05090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M0Y6" /translation="MEVVERACRLCLDVQRSLFSDEGRILEKNDQTPVTVADFGVQAL VSLELSKLFPSIPLVAEEDSGFLRSNNLVDPVVSAVSDKTSFDEESLSRADVLEAIDR GGKDAFAFGTKPATYWILDPIDGTRGFVKGSQALYVVGLSLVVEGEIVLGAMGCPNWV VDTSYRSTADVQGYKNSSPGLGIIMVAHVGCGTWTKRLKDMLDSSTKMSSDWTRCFVD GCCLVPEARFCISDSQTWESLPLSILYEARIDADDDIRDKEIRLLPTCCGSLCKYLMV ASGRASVFILQARSQKVIKAWDHAVGVICVHEAGGKVTDWTGSELDLAADQVERRNIY PAGGVLVTNGNIHDQILEMISSNSTVV" mobile_element 25366376..25366436 /note="source:scaffold_6_CACTA_0712 2540 2600" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25366787..25367482 /note="source:scaffold_6_CACTA_0712 2593 3285" /mobile_element_type="transposon:TIR/CACTA" gene 25374189..25376043 /locus_tag="TCM_030009" /note="dbxref CacaoGD:Thecc1EG030009" mRNA join(25374189..25374454,25374597..25374726, 25374815..25376043) /locus_tag="TCM_030009" /product="MYB-like 102" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007904t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03310.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1541t1" CDS join(25374322..25374454,25374597..25374726, 25374815..25375652) /locus_tag="TCM_030009" /note="paralog of Thecc1EG007904t1" /codon_start=1 /product="MYB-like 102" /protein_id="EOY28444.1" /db_xref="Phytozome:POPTR_0004s03310.1" /db_xref="TAIR:AT4G21440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65409" /translation="MGRAPCCDKNGLKKGPWTPEEDQKLIDYIEKHGYGNWRTLPKNA GLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDN EIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSSLYNQSQMNMSRLLGVQSF VNPELLRLATSLMSSQRENQSQNQNQNQSFLLQTVPESQLGSSQVQNQYQPLMQSNHL PTQVQEIPACTSLNGTPCIPFSSDAQLMNPNVDHFPSNLTDLSDWPGNAMPSNLTEDY VPLQPNYNYYGASDQTVMDPSSDTSNFHSNNSNQSFSFASVLSTPSSSPTPLNSNSTY INSSSTEDERESYCSDILKFEIPDILDVNEFM" mobile_element 25377307..25377445 /note="source:scaffold_4_CACTA_0483 2561 2691" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25379184..25379287 /note="source:CACAO_M_E24018_F98_scaffold_4 2015 2087" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25380727..25380821 /note="source:CACAO_M_E12463_F12_scaffold_3 4643 4721" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25383250..25395427 /locus_tag="TCM_030010" /note="dbxref CacaoGD:Thecc1EG030010" mRNA join(25383250..25383505,25383586..25383647, 25383742..25383782,25383911..25384115,25395209..25395427) /locus_tag="TCM_030010" /product="Phosphatidylethanolamine-binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003663001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012687t1" /inference="similar to AA sequence:Phytozome:GSVIVT01003663001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc397t17_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc397t17_C2" CDS join(25383305..25383505,25383586..25383647, 25383742..25383782,25383911..25384115,25395209..25395227) /locus_tag="TCM_030010" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG012687t1" /codon_start=1 /product="Phosphatidylethanolamine-binding protein, putative isoform 1" /protein_id="EOY28445.1" /db_xref="Phytozome:GSVIVT01003663001" /db_xref="TAIR:AT1G18100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SFC9" /translation="MARSVEPLVVGRVIGDVLDIFTPAAELTVHYSTKQVHNGCDIKP SSAADKPHVRILSPVVSSSLYTLVMVDPDAPTPSEPRLREWLHWIVVDIPEGHDATKG KEMVPYMGPQPPTGIHRYILVLFKQERATEGGCQLPDARANFSTRQFAAQNSLGLPVA AVYFNSQKEPAVKKR" mRNA join(<25383312..25383460,25383586..25383647, 25383742..25383782,25383911..25384312) /locus_tag="TCM_030010" /product="PEBP (phosphatidylethanolamine-binding protein) family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003663001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012687t2" /inference="similar to AA sequence:Phytozome:GSVIVT01003663001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.59 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00076t00003; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7788t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc397t17_C2" CDS join(<25383314..25383460,25383586..25383647, 25383742..25383782,25383911..25384134) /locus_tag="TCM_030010" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG012687t2" /codon_start=1 /product="PEBP (phosphatidylethanolamine-binding protein) family protein isoform 3" /protein_id="EOY28447.1" /db_xref="Phytozome:GSVIVT01003663001" /db_xref="TAIR:AT1G18100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SFC9" /translation="SVEPLVVGRVIGDVLDIFTPAAELTVHYSTKQVHNGCDIKPSSA ADKPHVMVDPDAPTPSEPRLREWLHWIVVDIPEGHDATKGKEMVPYMGPQPPTGIHRY ILVLFKQERATEGGCQLPDARANFSTRQFAAQNSLGLPVAAVYFNSQKEPAVKKR" mRNA join(<25383334..25383505,25383586..25383647, 25383742..25383782,25383911..25384326,25385699..25385706, 25394710..25394862) /locus_tag="TCM_030010" /product="Phosphatidylethanolamine-binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003663001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012687t1" /inference="similar to AA sequence:Phytozome:GSVIVT01003663001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial5; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc405t13; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7788t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc397t17_C2" CDS join(<25383335..25383505,25383586..25383647, 25383742..25383782,25383911..25384134) /locus_tag="TCM_030010" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG012687t1" /codon_start=1 /product="Phosphatidylethanolamine-binding protein, putative isoform 2" /protein_id="EOY28446.1" /db_xref="Phytozome:GSVIVT01003663001" /db_xref="TAIR:AT1G18100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SFC9" /translation="GRVIGDVLDIFTPAAELTVHYSTKQVHNGCDIKPSSAADKPHVR ILSPVVSSSLYTLVMVDPDAPTPSEPRLREWLHWIVVDIPEGHDATKGKEMVPYMGPQ PPTGIHRYILVLFKQERATEGGCQLPDARANFSTRQFAAQNSLGLPVAAVYFNSQKEP AVKKR" mobile_element complement(25384591..25384692) /note="source:scaffold_1_CACTA_0005 6580 6683" /mobile_element_type="transposon:TIR/CACTA" gene 25384889..25387207 /locus_tag="TCM_030011" /note="dbxref CacaoGD:Thecc1EG030011" mRNA join(25384889..25385011,25385475..25385975, 25386203..25386335,25386564..25386620,25386895..25387207) /locus_tag="TCM_030011" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" CDS join(25385917..25385975,25386203..25386335, 25386564..25386620,25386895..25387044) /locus_tag="TCM_030011" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28448.1" /translation="MRAQEGHAFVSFILNKMFRVKTLKVDGIAGLFRGYTMALAQLGV VTMLSPPLMPWHHFLYFQARSTYLGRAIVTYAFDLTGKLVLLYHPYDIYAAALGSVYY GSIPGLSISFKWKYEGGFSLSFSWEWDEDN" mobile_element 25387987..25388061 /note="source:scaffold_5_CACTA_0581 8118 8191" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25390337..25390418) /note="source:scaffold_1_CACTA_0005 6605 6689" /mobile_element_type="transposon:TIR/CACTA" gene 25390339..25395441 /locus_tag="TCM_046845" /note="dbxref CacaoGD:Thecc1EG046845" mRNA join(25390339..25390938,25391428..25392766, 25392926..25393195,25393410..25393565,25393972..25394004, 25394678..25394739,25394834..25394874,25395004..25395408) /locus_tag="TCM_046845" /product="AarF domain-containing kinase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046847t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03280.1" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7830t3" mRNA join(25390708..25390938,25391428..25392766, 25392926..25393195,25393410..25393565,25393972..25394739, 25394834..25394874,25395004..25395441) /locus_tag="TCM_046845" /product="AarF domain-containing kinase isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046847t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03280.1" /note="transcript variant 2; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7830t3" CDS join(25390931..25390938,25391428..25392766, 25392926..25393195,25393410..25393565,25393972..25394004, 25394678..25394739,25394834..25394874,25395004..25395227) /locus_tag="TCM_046845" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046847t1" /codon_start=1 /product="AarF domain-containing kinase isoform 1" /protein_id="EOY28449.1" /db_xref="Phytozome:POPTR_0004s03280.1" /db_xref="TAIR:AT1G11390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I8V6" /translation="MSRLLTFAKIRKVSQSAISNQLMSHSDFRKYGTVVTVGLRLPQY RVYSHYRFTSGGKPPLLLQTTKEGFCQGYFVRNHSFLSASSAVTHHAQVAWKRLTRRC YASGRTLPHISRIAQAVSLALSRSHLIVPGIFGLTCGQVALAQRTLVEADYYPSQNSL YMRAQDGHAFVSSILLSLVEGVILLLRALYLAVLFSPSIIMAPFADSCGSQFRKMWLE IVHRTLEKAGPAFIKWGQWAATRPDLFPRDLCTKLSELHSKAPEHSFAYTKKTIERAF GRKLSEIFEGFEEEPVASGSIAQVHRASLRFRYPGQRVKPMVVAVKVRHPGVGESIRR DFMIINLVAKISKFIPTLNWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRSWK DVSFPKPVYPLVHPAVLVETYEQGESVAHYVDGLEGHDRIKTALAHIGTHALLKMLLV DNFIHADMHPGNILVRVSKSKASQKRLFKSKPHVIFLDVGMTAELSRSDRVNLLEFFK AVARRDGRTAAECTLKLSQRQNCPNPKAFVEEVEEAFTFWGTPEGDLVHPAECMQQLL EKVRHHRVNIDGNVCTVMVTTLVLEGWQRKLDPGYNVMMDPDAPTPSELRLKEWLYWI VVDIPEGHDATKGREMAPYMGPLPPTGIHRCILALFKQERATGGGCRLPDARANFITR QFAAQSRPGLPFAAVYFNSQKEPAVKKR" CDS join(25390931..25390938,25391428..25392766, 25392926..25393195,25393410..25393565,25393972..25394091) /locus_tag="TCM_046845" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046847t1" /codon_start=1 /product="AarF domain-containing kinase isoform 2" /protein_id="EOY28450.1" /db_xref="Phytozome:POPTR_0004s03280.1" /db_xref="TAIR:AT1G11390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I8V6" /translation="MSRLLTFAKIRKVSQSAISNQLMSHSDFRKYGTVVTVGLRLPQY RVYSHYRFTSGGKPPLLLQTTKEGFCQGYFVRNHSFLSASSAVTHHAQVAWKRLTRRC YASGRTLPHISRIAQAVSLALSRSHLIVPGIFGLTCGQVALAQRTLVEADYYPSQNSL YMRAQDGHAFVSSILLSLVEGVILLLRALYLAVLFSPSIIMAPFADSCGSQFRKMWLE IVHRTLEKAGPAFIKWGQWAATRPDLFPRDLCTKLSELHSKAPEHSFAYTKKTIERAF GRKLSEIFEGFEEEPVASGSIAQVHRASLRFRYPGQRVKPMVVAVKVRHPGVGESIRR DFMIINLVAKISKFIPTLNWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRSWK DVSFPKPVYPLVHPAVLVETYEQGESVAHYVDGLEGHDRIKTALAHIGTHALLKMLLV DNFIHADMHPGNILVRVSKSKASQKRLFKSKPHVIFLDVGMTAELSRSDRVNLLEFFK AVARRDGRTAAECTLKLSQRQNCPNPKAFVEEVEEAFTFWGTPEGDLVHPAECMQQLL EKVRHHRVNIDGNVCTVMVTTLVLEGWQRKLDPGYNVMQTLQTLLLKADWAKSLSYTI DGLMAP" gene 25395912..25400000 /locus_tag="TCM_046847" /note="dbxref CacaoGD:Thecc1EG046847" mRNA join(25395912..25396170,25396650..25397988, 25398142..25398408,25398664..25398819,25399227..25400000) /locus_tag="TCM_046847" /product="AarF domain-containing kinase" /inference="alignment:exonerate- protein:2:TAIR:AT1G11390.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046845t2" /inference="similar to AA sequence:Phytozome:POPTR_0011s04110.1" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7836t1" CDS join(25396163..25396170,25396650..25397988, 25398142..25398408,25398664..25398819,25399227..25399346) /locus_tag="TCM_046847" /note="paralog of Thecc1EG046845t2" /codon_start=1 /product="AarF domain-containing kinase" /protein_id="EOY28451.1" /db_xref="Phytozome:POPTR_0011s04110.1" /db_xref="TAIR:AT1G11390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I8V6" /translation="MSRLLTFAKIRKASQSAISNQSTSHSDFRKYGTVVTFGLRLPQY SVYSHYRFKSGGKAQLLLQTTKEGLCQGYFVKNHSFLSASSAVTHRAQVAWKRLTWRC YASGRTLPHISRIAQAVSLVLSRSHLIVPGIFGLTCGQVALGQRTLLETDYYPSQNSL YMRAQDGHAFVSSILLSLVEGVILLLRALYLAVLFSPSIIMAPFIDSCDPQFRKMWLE VVHRTLEKAGPAFIKWGQWAATRPDLFPRDLCTKLSELHSKAPEHSFAYTKKTIERAF GRKLSEIFEGFEEEPVASGSIAQVHRASLRFRYPGQRVKPMVVAVKVRHPGVGESIRR DFMIINLVAKISKFIPTLNWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRSWK DVSFPKPVYPLVHPAVLVETYEQGESVAHYVDGPEGHDRIKTAIAHIGADAFFKMIED NLYHGDLHPGNILVQVSPSKASRKGLFKSKPQVIFLDVGMTTELSKSDRVNILEIFKA VARRDGRTAAECTLRLSQRQNCPNPKAFIEEVEESFTFWGTPEGDLVHPAECMQELLE KVRRHKVNIDGNVCTVMVSTLVLGGWQRKLDPEYDVMLMLQKRLLEADSAVSFPDIIN GRMAP" gene complement(25399780..25406946) /locus_tag="TCM_030013" /note="dbxref CacaoGD:Thecc1EG030013" mRNA complement(join(25399780..25400469,25400582..25400649, 25400736..25401142,25401223..25401295,25401379..25401900, 25402556..25402885,25403246..25403990,25404083..25404146, 25404236..25404368,25404467..25404572,25404941..25405086, 25405169..25406191)) /locus_tag="TCM_030013" /product="Lysine-specific demethylase 3B, putative isoform 8" /inference="alignment:exonerate- protein:2:ricco:29933.m001442" /inference="similar to AA sequence:ricco:29933.m001442" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b029030t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7878t2" mRNA complement(join(25399780..25400469,25400582..25400649, 25400736..25400855,25401057..25401142,25401223..25401295, 25401379..25401900,25402556..25402885,25403246..25403993, 25404083..25404146,25404236..25404368,25404467..25404572, 25404941..25405086,25405169..25406191)) /locus_tag="TCM_030013" /product="Lysine-specific demethylase 3B, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29933.m001442" /inference="similar to AA sequence:ricco:29933.m001442" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7878t2" mRNA complement(join(25400106..25400469,25400582..25400649, 25400736..25400855,25401057..25401142,25401223..25401295, 25401379..25401900,25402556..25402885,25403246..25403990, 25404083..25404146,25404236..25404368,25404467..25404572, 25404941..25405086,25405169..25406105)) /locus_tag="TCM_030013" /product="Lysine-specific demethylase 3B, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003669001.2" /inference="alignment:exonerate- protein:2:ricco:29933.m001442" /inference="similar to AA sequence:ricco:29933.m001442" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7878t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7878t2" mRNA complement(join(25400112..25400469,25400582..25400652, 25400736..25400855,25401057..25401142,25401223..25401295, 25401379..25401900,25402556..25402885,25403246..25403990, 25404083..25404146,25404236..25404368,25404467..25404572, 25404941..25405086,25405169..25406657,25406831..25406946)) /locus_tag="TCM_030013" /product="Lysine-specific demethylase 3B, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003669001.2" /inference="alignment:exonerate- protein:2:ricco:29933.m001442" /inference="similar to AA sequence:ricco:29933.m001442" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc819t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7878t2" mRNA complement(join(25400112..25400469,25400582..25400855, 25401057..25401142,25401223..25401295,25401379..25401900, 25402556..25402885,25403246..25403990,25404083..25404146, 25404236..25404368,25404467..25404572,25404941..25405086, 25405169..25406657,25406831..25406946)) /locus_tag="TCM_030013" /product="Lysine-specific demethylase 3B, putative isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003669001.2" /inference="alignment:exonerate- protein:2:ricco:29933.m001442" /inference="similar to AA sequence:ricco:29933.m001442" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc819t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7878t2" mRNA complement(join(25400112..25400469,25400582..25400649, 25400736..25400891,25401057..25401142,25401223..25401295, 25401379..25401900,25402556..25402885,25403246..25403990, 25404083..25404146,25404236..25404368,25404467..25404572, 25404941..25405086,25405169..25406657)) /locus_tag="TCM_030013" /product="Lysine-specific demethylase 3B, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003669001.2" /inference="alignment:exonerate- protein:2:ricco:29933.m001442" /inference="similar to AA sequence:ricco:29933.m001442" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc584t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7878t2" mRNA complement(join(25400112..25400469,25400582..25400649, 25400736..25400855,25401057..25401142,25401223..25401295, 25401379..25401900,25402556..25402885,25403246..25403990, 25404083..25404146,25404236..25404368,25404472..25404572, 25404941..25405086,25405169..25405678)) /locus_tag="TCM_030013" /product="Lysine-specific demethylase 3B, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003669001.2" /inference="alignment:exonerate- protein:2:ricco:29933.m001442" /inference="similar to AA sequence:ricco:29933.m001442" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc535t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7878t2" mRNA complement(join(25400112..25400469,25400582..25400649, 25400736..25400855,25401057..25401295,25401379..25401900, 25402556..25402885,25403246..25403990,25404083..25404146, 25404236..25404368,25404467..25404572,25404941..25405086, 25405169..25405678)) /locus_tag="TCM_030013" /product="Lysine-specific demethylase 3B, putative isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003669001.2" /inference="alignment:exonerate- protein:2:ricco:29933.m001442" /inference="similar to AA sequence:ricco:29933.m001442" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc535t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7878t2" CDS complement(join(25400424..25400469,25400582..25400649, 25400736..25400855,25401057..25401142,25401223..25401295, 25401379..25401900,25402556..25402885,25403246..25403990, 25404083..25404146,25404236..25404368,25404467..25404572, 25404941..25405086,25405169..25405831)) /locus_tag="TCM_030013" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29933.m001442" /codon_start=1 /product="Lysine-specific demethylase 3B, putative isoform 3" /protein_id="EOY28454.1" /db_xref="TAIR:AT4G21430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYN6" /translation="MEEEEGALPDHLRCKRTDGRQWRCRRRVTEGKKLCELHHIQGRH RQKKQKVPESLKMQRNKRKKKAFEKNKLEIRAKLLKLAKPMKRKRVIGGESEALDEAV RKMKLKRGDLPLELIRMVLKREIEKKKRKESDCSDFDDEEEEEKGDLMRELPNGLMAI SSSSPHFDNAGSCSGSGSGSGSVSGSCFNVKVGETETNTVAITRRRFRSKNIEPLPVG TLQVVPYKKDMVNLRRGRRIRCHWCRKGGVRSLIKCSSCRQQFFCLDCIKEQYFVMQE EVKIACPVCRGTCGCKACSVSQHRDTESKEFLRDKNKVDKVLHFHYLICMLLPVLKQI NQDQSVEIEVEAKVKGKKLSDIQVQPAEFGGNKQYCCNCKTFILDFHRSCSKCSYNLC LSCCRDNFQGSLVGSIKEINCKCPNRRKTCVPGIRLSHKKSVRTSKKNYDSRYFDSSA SLPSRKAPDGNVPISCPPTEFGGCGDGLLDLRCILPLRWFKELEISAEEIVGSYELPE AFNTLSCCSLCPGTDYEAKGVKQLQEAARRKISNDNFLFDPTIMNIHADNLEHFQKHW GKGHPVIVRNVLRDTSDLSWNPVFLFCTYLKNSFAKSENEELTKATGCLDWFEVEIGI KQLFLGSLRGLAQSNSCDEKMKLKGWLSSHLFQEQFPDHYTEIIRALPLPEYMDPRSG LLNIAARLPEEITKPDLGPCISISYCSGEELVQANSVTKLCYDLCDVVNILAHATDAP VSMKQLNKIRKLMKKKKFQDQREVAKTTLDRKAANKVKEKSAPHDENMEEVGLNDMLS KEMHAHERVPKVSHLPSAVHEAQDLGFKDRNAYHDKGDSSDSDSDSDCNSNSEAALLP CHTIHGSEAKSCGAEWDVFRRQDVPKLMEYLRKYSNEFGNTRGFQKHVVHPILDQNFF LDTSHKTRLKEEYEIEPWTFEQHVGEAVIIPAGCPYQIRNVKSCVNVVLDFVSPENVT ECIQLIDELRLLPENHKAQAEKFEVKKMALYRTSAAIKEIRELTCAESSAEFSEYLKT EEQ" CDS complement(join(25400424..25400469,25400582..25400652, 25400736..25400855,25401057..25401142,25401223..25401295, 25401379..25401900,25402556..25402885,25403246..25403990, 25404083..25404146,25404236..25404368,25404467..25404572, 25404941..25405086,25405169..25405831)) /locus_tag="TCM_030013" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29933.m001442" /codon_start=1 /product="Lysine-specific demethylase 3B, putative isoform 4" /protein_id="EOY28455.1" /db_xref="TAIR:AT4G21430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYN6" /translation="MEEEEGALPDHLRCKRTDGRQWRCRRRVTEGKKLCELHHIQGRH RQKKQKVPESLKMQRNKRKKKAFEKNKLEIRAKLLKLAKPMKRKRVIGGESEALDEAV RKMKLKRGDLPLELIRMVLKREIEKKKRKESDCSDFDDEEEEEKGDLMRELPNGLMAI SSSSPHFDNAGSCSGSGSGSGSVSGSCFNVKVGETETNTVAITRRRFRSKNIEPLPVG TLQVVPYKKDMVNLRRGRRIRCHWCRKGGVRSLIKCSSCRQQFFCLDCIKEQYFVMQE EVKIACPVCRGTCGCKACSVSQHRDTESKEFLRDKNKVDKVLHFHYLICMLLPVLKQI NQDQSVEIEVEAKVKGKKLSDIQVQPAEFGGNKQYCCNCKTFILDFHRSCSKCSYNLC LSCCRDNFQGSLVGSIKEINCKCPNRRKTCVPGIRLSHKKSVRTSKKNYDSRYFDSSA SLPSRKAPDGNVPISCPPTEFGGCGDGLLDLRCILPLRWFKELEISAEEIVGSYELPE AFNTLSCCSLCPGTDYEAKGVKQLQEAARRKISNDNFLFDPTIMNIHADNLEHFQKHW GKGHPVIVRNVLRDTSDLSWNPVFLFCTYLKNSFAKSENEELTKATGCLDWFEVEIGI KQLFLGSLRGLAQSNSCDEKMKLKGWLSSHLFQEQFPDHYTEIIRALPLPEYMDPRSG LLNIAARLPEEITKPDLGPCISISYCSGEELVQANSVTKLCYDLCDVVNILAHATDAP VSMKQLNKIRKLMKKKKFQDQREVAKTTLDRKAANKVKEKSAPHDENMEEVGLNDMLS KEMHAHERVPKVSHLPSAVHEAQDLGFKDRNAYHDKGDSSDSDSDSDCNSNSEAALLP CHTIHGSEAKSCGAEWDVFRRQDVPKLMEYLRKYSNEFGNTRGFQKHVVHPILDQNFF LDTSHKTRLKEEYEIEPWTFEQHVGEAVIIPAGCPYQIRNVKSCVNVVLDFVSPENVT ECIQLIDELRLLPENHKAQAEKFEQVKKMALYRTSAAIKEIRELTCAESSAEFSEYLK TEEQ" CDS complement(join(25400424..25400469,25400582..25400649, 25400736..25400891,25401057..25401142,25401223..25401295, 25401379..25401900,25402556..25402885,25403246..25403990, 25404083..25404146,25404236..25404368,25404467..25404572, 25404941..25405086,25405169..25405831)) /locus_tag="TCM_030013" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29933.m001442" /codon_start=1 /product="Lysine-specific demethylase 3B, putative isoform 2" /protein_id="EOY28453.1" /db_xref="TAIR:AT4G21430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYN6" /translation="MEEEEGALPDHLRCKRTDGRQWRCRRRVTEGKKLCELHHIQGRH RQKKQKVPESLKMQRNKRKKKAFEKNKLEIRAKLLKLAKPMKRKRVIGGESEALDEAV RKMKLKRGDLPLELIRMVLKREIEKKKRKESDCSDFDDEEEEEKGDLMRELPNGLMAI SSSSPHFDNAGSCSGSGSGSGSVSGSCFNVKVGETETNTVAITRRRFRSKNIEPLPVG TLQVVPYKKDMVNLRRGRRIRCHWCRKGGVRSLIKCSSCRQQFFCLDCIKEQYFVMQE EVKIACPVCRGTCGCKACSVSQHRDTESKEFLRDKNKVDKVLHFHYLICMLLPVLKQI NQDQSVEIEVEAKVKGKKLSDIQVQPAEFGGNKQYCCNCKTFILDFHRSCSKCSYNLC LSCCRDNFQGSLVGSIKEINCKCPNRRKTCVPGIRLSHKKSVRTSKKNYDSRYFDSSA SLPSRKAPDGNVPISCPPTEFGGCGDGLLDLRCILPLRWFKELEISAEEIVGSYELPE AFNTLSCCSLCPGTDYEAKGVKQLQEAARRKISNDNFLFDPTIMNIHADNLEHFQKHW GKGHPVIVRNVLRDTSDLSWNPVFLFCTYLKNSFAKSENEELTKATGCLDWFEVEIGI KQLFLGSLRGLAQSNSCDEKMKLKGWLSSHLFQEQFPDHYTEIIRALPLPEYMDPRSG LLNIAARLPEEITKPDLGPCISISYCSGEELVQANSVTKLCYDLCDVVNILAHATDAP VSMKQLNKIRKLMKKKKFQDQREVAKTTLDRKAANKVKEKSAPHDENMEEVGLNDMLS KEMHAHERVPKVSHLPSAVHEAQDLGFKDRNAYHDKGDSSDSDSDSDCNSNSEAALLP CHTIHGSEAKSCGAEWDVFRRQDVPKLMEYLRKYSNEFGNTRGFQKHVVHPILDQNFF LDTSHKTRLKEEYEIEPWTFEQHVGEAVIIPAGCPYQIRNVKILFFSLTCHNLESCVN VVLDFVSPENVTECIQLIDELRLLPENHKAQAEKFEVKKMALYRTSAAIKEIRELTCA ESSAEFSEYLKTEEQ" CDS complement(join(25400424..25400469,25400582..25400649, 25400736..25400855,25401057..25401142,25401223..25401295, 25401379..25401900,25402556..25402885,25403246..25403993, 25404083..25404146,25404236..25404368,25404467..25404572, 25404941..25405086,25405169..25405831)) /locus_tag="TCM_030013" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29933.m001442" /codon_start=1 /product="Lysine-specific demethylase 3B, putative isoform 1" /protein_id="EOY28452.1" /db_xref="TAIR:AT4G21430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYN6" /translation="MEEEEGALPDHLRCKRTDGRQWRCRRRVTEGKKLCELHHIQGRH RQKKQKVPESLKMQRNKRKKKAFEKNKLEIRAKLLKLAKPMKRKRVIGGESEALDEAV RKMKLKRGDLPLELIRMVLKREIEKKKRKESDCSDFDDEEEEEKGDLMRELPNGLMAI SSSSPHFDNAGSCSGSGSGSGSVSGSCFNVKVGETETNTVAITRRRFRSKNIEPLPVG TLQVVPYKKDMVNLRRGRRIRCHWCRKGGVRSLIKCSSCRQQFFCLDCIKEQYFVMQE EVKIACPVCRGTCGCKACSVSQHRDTESKEFLRDKNKVDKVLHFHYLICMLLPVLKQI NQDQSVEIEVEAKVKGKKLSDIQVQPAEFGGNKQYCCSNCKTFILDFHRSCSKCSYNL CLSCCRDNFQGSLVGSIKEINCKCPNRRKTCVPGIRLSHKKSVRTSKKNYDSRYFDSS ASLPSRKAPDGNVPISCPPTEFGGCGDGLLDLRCILPLRWFKELEISAEEIVGSYELP EAFNTLSCCSLCPGTDYEAKGVKQLQEAARRKISNDNFLFDPTIMNIHADNLEHFQKH WGKGHPVIVRNVLRDTSDLSWNPVFLFCTYLKNSFAKSENEELTKATGCLDWFEVEIG IKQLFLGSLRGLAQSNSCDEKMKLKGWLSSHLFQEQFPDHYTEIIRALPLPEYMDPRS GLLNIAARLPEEITKPDLGPCISISYCSGEELVQANSVTKLCYDLCDVVNILAHATDA PVSMKQLNKIRKLMKKKKFQDQREVAKTTLDRKAANKVKEKSAPHDENMEEVGLNDML SKEMHAHERVPKVSHLPSAVHEAQDLGFKDRNAYHDKGDSSDSDSDSDCNSNSEAALL PCHTIHGSEAKSCGAEWDVFRRQDVPKLMEYLRKYSNEFGNTRGFQKHVVHPILDQNF FLDTSHKTRLKEEYEIEPWTFEQHVGEAVIIPAGCPYQIRNVKSCVNVVLDFVSPENV TECIQLIDELRLLPENHKAQAEKFEVKKMALYRTSAAIKEIRELTCAESSAEFSEYLK TEEQ" CDS complement(join(25400424..25400469,25400582..25400649, 25400736..25400855,25401057..25401142,25401223..25401295, 25401379..25401900,25402556..25402885,25403246..25403990, 25404083..25404146,25404236..25404308)) /locus_tag="TCM_030013" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29933.m001442" /codon_start=1 /product="Lysine-specific demethylase 3B, putative isoform 5" /protein_id="EOY28456.1" /db_xref="TAIR:AT4G21430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYN6" /translation="MLLPVLKQINQDQSVEIEVEAKVKGKKLSDIQVQPAEFGGNKQY CCNCKTFILDFHRSCSKCSYNLCLSCCRDNFQGSLVGSIKEINCKCPNRRKTCVPGIR LSHKKSVRTSKKNYDSRYFDSSASLPSRKAPDGNVPISCPPTEFGGCGDGLLDLRCIL PLRWFKELEISAEEIVGSYELPEAFNTLSCCSLCPGTDYEAKGVKQLQEAARRKISND NFLFDPTIMNIHADNLEHFQKHWGKGHPVIVRNVLRDTSDLSWNPVFLFCTYLKNSFA KSENEELTKATGCLDWFEVEIGIKQLFLGSLRGLAQSNSCDEKMKLKGWLSSHLFQEQ FPDHYTEIIRALPLPEYMDPRSGLLNIAARLPEEITKPDLGPCISISYCSGEELVQAN SVTKLCYDLCDVVNILAHATDAPVSMKQLNKIRKLMKKKKFQDQREVAKTTLDRKAAN KVKEKSAPHDENMEEVGLNDMLSKEMHAHERVPKVSHLPSAVHEAQDLGFKDRNAYHD KGDSSDSDSDSDCNSNSEAALLPCHTIHGSEAKSCGAEWDVFRRQDVPKLMEYLRKYS NEFGNTRGFQKHVVHPILDQNFFLDTSHKTRLKEEYEIEPWTFEQHVGEAVIIPAGCP YQIRNVKSCVNVVLDFVSPENVTECIQLIDELRLLPENHKAQAEKFEVKKMALYRTSA AIKEIRELTCAESSAEFSEYLKTEEQ" CDS complement(join(25400655..25400855,25401057..25401142, 25401223..25401295,25401379..25401900,25402556..25402885, 25403246..25403990,25404083..25404146,25404236..25404368, 25404467..25404572,25404941..25405086,25405169..25405831)) /locus_tag="TCM_030013" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29933.m001442" /codon_start=1 /product="Lysine-specific demethylase 3B, putative isoform 6" /protein_id="EOY28457.1" /db_xref="TAIR:AT4G21430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYN6" /translation="MEEEEGALPDHLRCKRTDGRQWRCRRRVTEGKKLCELHHIQGRH RQKKQKVPESLKMQRNKRKKKAFEKNKLEIRAKLLKLAKPMKRKRVIGGESEALDEAV RKMKLKRGDLPLELIRMVLKREIEKKKRKESDCSDFDDEEEEEKGDLMRELPNGLMAI SSSSPHFDNAGSCSGSGSGSGSVSGSCFNVKVGETETNTVAITRRRFRSKNIEPLPVG TLQVVPYKKDMVNLRRGRRIRCHWCRKGGVRSLIKCSSCRQQFFCLDCIKEQYFVMQE EVKIACPVCRGTCGCKACSVSQHRDTESKEFLRDKNKVDKVLHFHYLICMLLPVLKQI NQDQSVEIEVEAKVKGKKLSDIQVQPAEFGGNKQYCCNCKTFILDFHRSCSKCSYNLC LSCCRDNFQGSLVGSIKEINCKCPNRRKTCVPGIRLSHKKSVRTSKKNYDSRYFDSSA SLPSRKAPDGNVPISCPPTEFGGCGDGLLDLRCILPLRWFKELEISAEEIVGSYELPE AFNTLSCCSLCPGTDYEAKGVKQLQEAARRKISNDNFLFDPTIMNIHADNLEHFQKHW GKGHPVIVRNVLRDTSDLSWNPVFLFCTYLKNSFAKSENEELTKATGCLDWFEVEIGI KQLFLGSLRGLAQSNSCDEKMKLKGWLSSHLFQEQFPDHYTEIIRALPLPEYMDPRSG LLNIAARLPEEITKPDLGPCISISYCSGEELVQANSVTKLCYDLCDVVNILAHATDAP VSMKQLNKIRKLMKKKKFQDQREVAKTTLDRKAANKVKEKSAPHDENMEEVGLNDMLS KEMHAHERVPKVSHLPSAVHEAQDLGFKDRNAYHDKGDSSDSDSDSDCNSNSEAALLP CHTIHGSEAKSCGAEWDVFRRQDVPKLMEYLRKYSNEFGNTRGFQKHVVHPILDQNFF LDTSHKTRLKEEYEIEPWTFEQHVGEAVIIPAGCPYQIRNVKSCVNVVLDFVSPENVT ECIQLIDELRLLPENHKAQAEKFEVNFVKTLLQLTVFIFCINATVILVCS" CDS complement(join(25401012..25401142,25401223..25401295, 25401379..25401900,25402556..25402885,25403246..25403990, 25404083..25404146,25404236..25404368,25404467..25404572, 25404941..25405086,25405169..25405831)) /locus_tag="TCM_030013" /note="encoded by transcript variant 8; alternatively spliced; dbxref ricco:29933.m001442" /codon_start=1 /product="Lysine-specific demethylase 3B, putative isoform 8" /protein_id="EOY28459.1" /db_xref="TAIR:AT4G21430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYN6" /translation="MEEEEGALPDHLRCKRTDGRQWRCRRRVTEGKKLCELHHIQGRH RQKKQKVPESLKMQRNKRKKKAFEKNKLEIRAKLLKLAKPMKRKRVIGGESEALDEAV RKMKLKRGDLPLELIRMVLKREIEKKKRKESDCSDFDDEEEEEKGDLMRELPNGLMAI SSSSPHFDNAGSCSGSGSGSGSVSGSCFNVKVGETETNTVAITRRRFRSKNIEPLPVG TLQVVPYKKDMVNLRRGRRIRCHWCRKGGVRSLIKCSSCRQQFFCLDCIKEQYFVMQE EVKIACPVCRGTCGCKACSVSQHRDTESKEFLRDKNKVDKVLHFHYLICMLLPVLKQI NQDQSVEIEVEAKVKGKKLSDIQVQPAEFGGNKQYCCNCKTFILDFHRSCSKCSYNLC LSCCRDNFQGSLVGSIKEINCKCPNRRKTCVPGIRLSHKKSVRTSKKNYDSRYFDSSA SLPSRKAPDGNVPISCPPTEFGGCGDGLLDLRCILPLRWFKELEISAEEIVGSYELPE AFNTLSCCSLCPGTDYEAKGVKQLQEAARRKISNDNFLFDPTIMNIHADNLEHFQKHW GKGHPVIVRNVLRDTSDLSWNPVFLFCTYLKNSFAKSENEELTKATGCLDWFEVEIGI KQLFLGSLRGLAQSNSCDEKMKLKGWLSSHLFQEQFPDHYTEIIRALPLPEYMDPRSG LLNIAARLPEEITKPDLGPCISISYCSGEELVQANSVTKLCYDLCDVVNILAHATDAP VSMKQLNKIRKLMKKKKFQDQREVAKTTLDRKAANKVKEKSAPHDENMEEVGLNDMLS KEMHAHERVPKVSHLPSAVHEAQDLGFKDRNAYHDKGDSSDSDSDSDCNSNSEAALLP CHTIHGSEAKSCGAEWDVFRRQDVPKLMEYLRKYSNEFGNTRGFQKHVVHPILDQNFF LDTSHKTRLKEEYEIEPWTFEQHVGEAVIIPAGCPYQIRNVKVMYTTDIFGLEFLI" CDS complement(join(25401143..25401295,25401379..25401900, 25402556..25402885,25403246..25403990,25404083..25404146, 25404236..25404368,25404467..25404572,25404941..25405086, 25405169..25405663)) /locus_tag="TCM_030013" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:29933.m001442" /codon_start=1 /product="Lysine-specific demethylase 3B, putative isoform 7" /protein_id="EOY28458.1" /db_xref="TAIR:AT4G21430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYN6" /translation="MQRNKRKKKAFEKNKLEIRAKLLKLAKPMKRKRVIGGESEALDE AVRKMKLKRGDLPLELIRMVLKREIEKKKRKESDCSDFDDEEEEEKGDLMRELPNGLM AISSSSPHFDNAGSCSGSGSGSGSVSGSCFNVKVGETETNTVAITRRRFRSKNIEPLP VGTLQVVPYKKDMVNLRRGRRIRCHWCRKGGVRSLIKCSSCRQQFFCLDCIKEQYFVM QEEVKIACPVCRGTCGCKACSVSQHRDTESKEFLRDKNKVDKVLHFHYLICMLLPVLK QINQDQSVEIEVEAKVKGKKLSDIQVQPAEFGGNKQYCCNCKTFILDFHRSCSKCSYN LCLSCCRDNFQGSLVGSIKEINCKCPNRRKTCVPGIRLSHKKSVRTSKKNYDSRYFDS SASLPSRKAPDGNVPISCPPTEFGGCGDGLLDLRCILPLRWFKELEISAEEIVGSYEL PEAFNTLSCCSLCPGTDYEAKGVKQLQEAARRKISNDNFLFDPTIMNIHADNLEHFQK HWGKGHPVIVRNVLRDTSDLSWNPVFLFCTYLKNSFAKSENEELTKATGCLDWFEVEI GIKQLFLGSLRGLAQSNSCDEKMKLKGWLSSHLFQEQFPDHYTEIIRALPLPEYMDPR SGLLNIAARLPEEITKPDLGPCISISYCSGEELVQANSVTKLCYDLCDVVNILAHATD APVSMKQLNKIRKLMKKKKFQDQREVAKTTLDRKAANKVKEKSAPHDENMEEVGLNDM LSKEMHAHERVPKVSHLPSAVHEAQDLGFKDRNAYHDKGDSSDSDSDSDCNSNSEAAL LPCHTIHGSEAKSCGAEWDVFRRQDVPKLMEYLRKYSNEFGNTRGFQKHVVHPILDQN FFLDTSHKTRLKEEYGEFAKFGLSLVTVEDNVTEISISYCF" gene complement(25406924..25409563) /locus_tag="TCM_030014" /note="dbxref CacaoGD:Thecc1EG030014" mRNA complement(join(25406924..25408071,25408468..25408569, 25408892..25409563)) /locus_tag="TCM_030014" /product="Polynucleotidyl transferase" /inference="alignment:exonerate- protein:2:ricco:29933.m001444" /inference="similar to AA sequence:ricco:29933.m001444" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7762t1" CDS complement(join(25407899..25408071,25408468..25408569, 25408892..25409474)) /locus_tag="TCM_030014" /note="dbxref ricco:29933.m001444" /codon_start=1 /product="Polynucleotidyl transferase" /protein_id="EOY28460.1" /translation="MMLAFSNIFRCQRLIQNPVQLLIRNWHKEAIPVSWEKPEIGWTK LNFDGSCKGRGGKASIGGVFRNHKAEFLLGYAESIGRSTSTIAELAALRRGLELVLEN GWTDVWLEGDAKTLVDVIVQRRQVKCAELQRHVSHINLIIPELNNCIVTHIYREGNRA ADKLAQIGHQLKKPQIWWHIPPNEVLPIVHEDAEGEIKAGQWKSVINRKLSKFYHLTY QSSGPYLEPEAEANIWGFPDGRHIIECSVDEFFHFLPTLSQMNSPALHSIMCFALSGN EGHQDSREY" mobile_element complement(25408073..25408163) /note="source:CACAO_M_E427_F230_scaffold_1 1101 1193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25408113..25408170) /note="source:CACAO_M_E42343_F106_scaffold_5 6707 6764" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25408171..25408208 /note="source:CACAO_M_E52882_F369_scaffold_8 1415 1495" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25409912..25413411) /locus_tag="TCM_030015" /note="dbxref CacaoGD:Thecc1EG030015" mRNA complement(join(25409912..25410771,25410876..25411134, 25411541..25411701,25411784..25411959,25412294..25412399, 25412486..25412629,25412737..25412892,25413109..25413213, 25413331..25413411)) /locus_tag="TCM_030015" /product="Major facilitator superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007894t2" /inference="similar to AA sequence:Phytozome:POPTR_0004s03240.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1021t1" CDS complement(join(25410658..25410771,25410876..25411134, 25411541..25411701,25411784..25411959,25412294..25412399, 25412486..25412629,25412737..25412892,25413109..25413213, 25413331..25413372)) /locus_tag="TCM_030015" /note="paralog of Thecc1EG007894t2" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY28461.1" /db_xref="Phytozome:POPTR_0004s03240.1" /db_xref="TAIR:AT4G05120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I741" /translation="MIIADGGELPARLEGKFSAMVICWILGLGSLVAWNSMLTIGDYY YNLFPTYHPSRVLTLVYQPFALGTMAILAYNESRIDTRQRNLVGYLLFFASTFMLIVL DLATSGRGGVGPFIGICAFVGGFGIADAHVQGGMVGDLSFMLPEFIQSFLAGLAASGA LTSALRLITKAAFEKSNDGLRKGTMLFLGISTFFELLCVLLYAFFFPKLPIVKYFRSK AASEGSKTVKADLAAAGIQTKEDQGDEDNAKQTDRLSNKQLFFQNIDYALDLFLIYVL TLSIFPGFLYENTGEHKLGTWYPLVLIASYNLWDLISRYLPLVKFLMIESRKGLTIAI LSRFLLIPAFYFTANYGDQGWMILLVSFLGLTNGHLTVCVLTAAPKGYKGPEQNALGN LLVLCLLAGIFAGVALDWLWLIGKKNAF" gene 25414306..25415922 /locus_tag="TCM_030016" /note="dbxref CacaoGD:Thecc1EG030016" mRNA join(25414306..25414496,25415234..25415577, 25415667..25415922) /locus_tag="TCM_030016" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.38 coverage" CDS join(25415458..25415577,25415667..25415750) /locus_tag="TCM_030016" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28462.1" /translation="MKRIFFRYVARDLIRDGSSSKSPRTPRTNILKSSEYPQNQDQPK ASCVQAELWGLRDGLSSATSSGV" mobile_element 25416294..25416335 /note="source:CACAO_M_E43428_F369_scaffold_5 1288 1329" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25416676..25420941 /locus_tag="TCM_030017" /note="dbxref CacaoGD:Thecc1EG030017" mRNA join(25416676..25416776,25417587..25417861, 25417957..25419013,25420161..25420263,25420631..25420941) /locus_tag="TCM_030017" /product="Octicosapeptide/Phox/Bem1p family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03230.1" /inference="similar to AA sequence:ricco:29933.m001447" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc619t1" mRNA join(25416722..25416776,25416933..25417083, 25417593..25417861,25417957..25419013,25420631..25420915) /locus_tag="TCM_030017" /product="Octicosapeptide/Phox/Bem1p family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03230.1" /inference="similar to AA sequence:ricco:29933.m001447" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc619t1; alternateUTRof:Thecc1EG030017t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc619t1" mRNA join(25417492..25417861,25418020..25419013, 25420161..25420263,25420631..25420915) /locus_tag="TCM_030017" /product="Octicosapeptide/Phox/Bem1p family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03230.1" /inference="similar to AA sequence:ricco:29933.m001447" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc619t4; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc619t1" CDS join(25417615..25417861,25417957..25418981) /locus_tag="TCM_030017" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29933.m001447" /codon_start=1 /product="Octicosapeptide/Phox/Bem1p family protein, putative isoform 1" /protein_id="EOY28463.1" /db_xref="TAIR:AT4G05150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1Z8" /translation="MSSHHLSEPDSTTDSLASSPSSEHHAPHDSHARVRIMCSFGGNI LPRPHDNQLRYVGGDTRIVAVHRSTSFSAFLTKLSRLSGIGNVSVKYQLPNEDLDALI SVTTDEDLENMMEEYDRLAQNQNPRLARLRLFLFSKGDDSRTSSISSLLDGSVNREHW FFDALNGGPNASGLERGRSEASSIVSEVPDYLFGLENSDEAQPRDLKSKTRQLVHENV SVSDPGSPAPVVSSSPFCSTSSAPIVPSMPDLPPVKTKPDNPEPVLESNQSQTESFVE QPVSQPTGYSGSPMWHYVADSHYSAPPVPQIPVYYVPGHVQPGNRQVQPLQIRAQYVQ QYPISAGQMPVGYPQPVPGVGQVYRPVAPVDPYDPALRMAPDGVKQQVYYGVRNAGPV PVYPGMVVPGGEEMGRSGSDTTPGRISQSGQ" CDS join(25417615..25417861,25417957..25418981) /locus_tag="TCM_030017" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29933.m001447" /codon_start=1 /product="Octicosapeptide/Phox/Bem1p family protein, putative isoform 1" /protein_id="EOY28464.1" /db_xref="TAIR:AT4G05150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1Z8" /translation="MSSHHLSEPDSTTDSLASSPSSEHHAPHDSHARVRIMCSFGGNI LPRPHDNQLRYVGGDTRIVAVHRSTSFSAFLTKLSRLSGIGNVSVKYQLPNEDLDALI SVTTDEDLENMMEEYDRLAQNQNPRLARLRLFLFSKGDDSRTSSISSLLDGSVNREHW FFDALNGGPNASGLERGRSEASSIVSEVPDYLFGLENSDEAQPRDLKSKTRQLVHENV SVSDPGSPAPVVSSSPFCSTSSAPIVPSMPDLPPVKTKPDNPEPVLESNQSQTESFVE QPVSQPTGYSGSPMWHYVADSHYSAPPVPQIPVYYVPGHVQPGNRQVQPLQIRAQYVQ QYPISAGQMPVGYPQPVPGVGQVYRPVAPVDPYDPALRMAPDGVKQQVYYGVRNAGPV PVYPGMVVPGGEEMGRSGSDTTPGRISQSGQ" CDS join(25417615..25417861,25418020..25418981) /locus_tag="TCM_030017" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29933.m001447" /codon_start=1 /product="Octicosapeptide/Phox/Bem1p family protein, putative isoform 3" /protein_id="EOY28465.1" /db_xref="TAIR:AT4G05150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1Z8" /translation="MSSHHLSEPDSTTDSLASSPSSEHHAPHDSHARVRIMCSFGGNI LPRPHDNQLRYVGGDTRIVAVHRSTSFSAFLTKLSRLSVTTDEDLENMMEEYDRLAQN QNPRLARLRLFLFSKGDDSRTSSISSLLDGSVNREHWFFDALNGGPNASGLERGRSEA SSIVSEVPDYLFGLENSDEAQPRDLKSKTRQLVHENVSVSDPGSPAPVVSSSPFCSTS SAPIVPSMPDLPPVKTKPDNPEPVLESNQSQTESFVEQPVSQPTGYSGSPMWHYVADS HYSAPPVPQIPVYYVPGHVQPGNRQVQPLQIRAQYVQQYPISAGQMPVGYPQPVPGVG QVYRPVAPVDPYDPALRMAPDGVKQQVYYGVRNAGPVPVYPGMVVPGGEEMGRSGSDT TPGRISQSGQ" mobile_element complement(25420471..25420536) /note="source:CACAO_M_S_E144734_F98_scaffold_10 510 576" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25420472..25420524 /note="source:CACAO_M_E43428_F369_scaffold_5 1276 1328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25421654..25421717) /note="source:CACAO_M_E22429_F345_scaffold_3 1450 1512" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25423763..25423842 /note="source:scaffold_1_CACTA_0005 6268 6352" /mobile_element_type="transposon:TIR/CACTA" gene 25426402..25428951 /locus_tag="TCM_030019" /note="dbxref CacaoGD:Thecc1EG030019" mRNA join(25426402..25426923,25427016..25427120, 25427338..25427433,25427526..25427724,25427819..25427949, 25428048..25428951) /locus_tag="TCM_030019" /product="D6-type cyclin isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007869t1" /inference="similar to AA sequence:ricco:29933.m001448" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b029035t1a4; inference alignment:Newbler:10:TSA:cgbaB_g00084t00002" mRNA join(25426489..25426923,25427034..25427120, 25427338..25427433,25427526..25427724,25427819..25427949, 25428048..25428323,25428465..25428729) /locus_tag="TCM_030019" /product="D6-type cyclin isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007869t1" /inference="similar to AA sequence:ricco:29933.m001448" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01669t00001; inference alignment:Newbler:10:TSA:cgbaB_g00084t00002" mRNA join(25426489..25426923,25427034..25427120, 25427338..25427433,25427526..25427724,25427819..25427949, 25428081..>25428170) /locus_tag="TCM_030019" /product="D6-type cyclin, putative isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007869t1" /inference="similar to AA sequence:ricco:29933.m001448" /note="transcript variant 7; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01669t00002; inference alignment:Newbler:10:TSA:cgbaB_g00084t00002" mRNA join(25426733..25426923,25427016..25427120, 25427338..25427433,25427526..25427727,25427819..25427949, 25428048..25428727) /locus_tag="TCM_030019" /product="D6-type cyclin isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007869t1" /inference="similar to AA sequence:ricco:29933.m001448" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00084t00001; inference alignment:Newbler:10:TSA:cgbaB_g00084t00002" mRNA join(25426733..25426923,25427016..25427120, 25427338..25427433,25427526..25427727,25427819..25427949, 25428081..25428727) /locus_tag="TCM_030019" /product="D6-type cyclin isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007869t1" /inference="similar to AA sequence:ricco:29933.m001448" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00084t00004; inference alignment:Newbler:10:TSA:cgbaB_g00084t00002" mRNA join(25426733..25426923,25427034..25427120, 25427338..25427433,25427526..25427727,25427819..25427949, 25428048..25428727) /locus_tag="TCM_030019" /product="D6-type cyclin isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007869t1" /inference="similar to AA sequence:ricco:29933.m001448" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00084t00002; inference alignment:Newbler:10:TSA:cgbaB_g00084t00002" mRNA join(25426733..25426923,25427034..25427120, 25427338..25427433,25427526..25427727,25427819..25427949, 25428081..25428727) /locus_tag="TCM_030019" /product="D6-type cyclin isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007869t1" /inference="similar to AA sequence:ricco:29933.m001448" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00084t00005; inference alignment:Newbler:10:TSA:cgbaB_g00084t00002" mRNA join(25426733..25426923,25427338..25427433, 25427526..25427727,25427819..25427949,25428048..25428727) /locus_tag="TCM_030019" /product="D6-type cyclin isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007869t1" /inference="similar to AA sequence:ricco:29933.m001448" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00084t00007; inference alignment:Newbler:10:TSA:cgbaB_g00084t00002" mRNA join(25426733..25426923,25427338..25427433, 25427526..25427727,25427819..25427949,25428081..25428727) /locus_tag="TCM_030019" /product="D6-type cyclin isoform 9" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007869t1" /inference="similar to AA sequence:ricco:29933.m001448" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00084t00008; inference alignment:Newbler:10:TSA:cgbaB_g00084t00002" CDS join(25426744..25426923,25427016..25427120, 25427338..25427433,25427526..25427727,25427819..25427949, 25428048..25428317) /locus_tag="TCM_030019" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29933.m001448; paralog of Thecc1EG007869t1" /codon_start=1 /product="D6-type cyclin isoform 2" /protein_id="EOY28467.1" /db_xref="TAIR:AT4G03270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8Y921" /translation="MEYFDLEDPFTSLKEHQSDTISALFSSESDHMPSQNYLQCLKTS DFYVSFRQEAISLILQLVLVGQAQYSCNLDPYTPYLAVNYMDRFISRQDIPQGNPWVL RLLVIACISLAAKMKEIHFSSSNFQREEGFIFDAPAIQRMELLILDALNWRMRSVTPF SFICFFMSLFELKDPPLTQALKDRASNIIFQAHGEINLLEFKPSILAASALLLASHEL FPLQFPSVETSILSCEYVNKESLLKCFNATQDMVVNQISESIVDTVSSSSTRTPLSVL DCHCTKAESESTTSTMGATAMAEKREIKRRKLNDFCSESTRVQISQIQPFG" CDS join(25426744..25426923,25427016..25427120, 25427338..25427433,25427526..25427727,25427819..25427949, 25428081..25428317) /locus_tag="TCM_030019" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29933.m001448; paralog of Thecc1EG007869t1" /codon_start=1 /product="D6-type cyclin isoform 4" /protein_id="EOY28469.1" /db_xref="TAIR:AT4G03270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8Y921" /translation="MEYFDLEDPFTSLKEHQSDTISALFSSESDHMPSQNYLQCLKTS DFYVSFRQEAISLILQLVLVGQAQYSCNLDPYTPYLAVNYMDRFISRQDIPQGNPWVL RLLVIACISLAAKMKEIHFSSSNFQREEGFIFDAPAIQRMELLILDALNWRMRSVTPF SFICFFMSLFELKDPPLTQALKDRASNIIFQAHGEINLLEFKPSILAASALLLASHEL FPLQFPSVETSILSCEYVNKDMVVNQISESIVDTVSSSSTRTPLSVLDCHCTKAESES TTSTMGATAMAEKREIKRRKLNDFCSESTRVQISQIQPFG" CDS join(25426744..25426923,25427016..25427120, 25427338..25427433,25427526..25427724,25427819..25427949, 25428048..25428317) /locus_tag="TCM_030019" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29933.m001448; paralog of Thecc1EG007869t1" /codon_start=1 /product="D6-type cyclin isoform 3" /protein_id="EOY28468.1" /db_xref="TAIR:AT4G03270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8Y921" /translation="MEYFDLEDPFTSLKEHQSDTISALFSSESDHMPSQNYLQCLKTS DFYVSFRQEAISLILQLVLVGQAQYSCNLDPYTPYLAVNYMDRFISRQDIPQGNPWVL RLLVIACISLAAKMKEIHFSSSNFQREEGFIFDAPAIQRMELLILDALNWRMRSVTPF SFICFFMSLFELKDPPLTQALKDRASNIIFQAHEINLLEFKPSILAASALLLASHELF PLQFPSVETSILSCEYVNKESLLKCFNATQDMVVNQISESIVDTVSSSSTRTPLSVLD CHCTKAESESTTSTMGATAMAEKREIKRRKLNDFCSESTRVQISQIQPFG" CDS join(25426744..25426923,25427034..25427120, 25427338..25427433,25427526..25427727,25427819..25427949, 25428048..25428317) /locus_tag="TCM_030019" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29933.m001448; paralog of Thecc1EG007869t1" /codon_start=1 /product="D6-type cyclin isoform 1" /protein_id="EOY28466.1" /db_xref="TAIR:AT4G03270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8Y921" /translation="MEYFDLEDPFTSLKEHQSDTISALFSSESDHMPSQNYLQCLKTS DFYVSFRQEAISLILQAQYSCNLDPYTPYLAVNYMDRFISRQDIPQGNPWVLRLLVIA CISLAAKMKEIHFSSSNFQREEGFIFDAPAIQRMELLILDALNWRMRSVTPFSFICFF MSLFELKDPPLTQALKDRASNIIFQAHGEINLLEFKPSILAASALLLASHELFPLQFP SVETSILSCEYVNKESLLKCFNATQDMVVNQISESIVDTVSSSSTRTPLSVLDCHCTK AESESTTSTMGATAMAEKREIKRRKLNDFCSESTRVQISQIQPFG" CDS join(25426744..25426923,25427034..25427120, 25427338..25427433,25427526..25427727,25427819..25427949, 25428081..25428317) /locus_tag="TCM_030019" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29933.m001448; paralog of Thecc1EG007869t1" /codon_start=1 /product="D6-type cyclin isoform 6" /protein_id="EOY28471.1" /db_xref="TAIR:AT4G03270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8Y921" /translation="MEYFDLEDPFTSLKEHQSDTISALFSSESDHMPSQNYLQCLKTS DFYVSFRQEAISLILQAQYSCNLDPYTPYLAVNYMDRFISRQDIPQGNPWVLRLLVIA CISLAAKMKEIHFSSSNFQREEGFIFDAPAIQRMELLILDALNWRMRSVTPFSFICFF MSLFELKDPPLTQALKDRASNIIFQAHGEINLLEFKPSILAASALLLASHELFPLQFP SVETSILSCEYVNKDMVVNQISESIVDTVSSSSTRTPLSVLDCHCTKAESESTTSTMG ATAMAEKREIKRRKLNDFCSESTRVQISQIQPFG" CDS join(25426744..25426923,25427034..25427120, 25427338..25427433,25427526..25427724,25427819..25427949, 25428048..25428317) /locus_tag="TCM_030019" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29933.m001448; paralog of Thecc1EG007869t1" /codon_start=1 /product="D6-type cyclin isoform 5" /protein_id="EOY28470.1" /db_xref="TAIR:AT4G03270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8Y921" /translation="MEYFDLEDPFTSLKEHQSDTISALFSSESDHMPSQNYLQCLKTS DFYVSFRQEAISLILQAQYSCNLDPYTPYLAVNYMDRFISRQDIPQGNPWVLRLLVIA CISLAAKMKEIHFSSSNFQREEGFIFDAPAIQRMELLILDALNWRMRSVTPFSFICFF MSLFELKDPPLTQALKDRASNIIFQAHEINLLEFKPSILAASALLLASHELFPLQFPS VETSILSCEYVNKESLLKCFNATQDMVVNQISESIVDTVSSSSTRTPLSVLDCHCTKA ESESTTSTMGATAMAEKREIKRRKLNDFCSESTRVQISQIQPFG" CDS join(25426744..25426923,25427338..25427433, 25427526..25427727,25427819..25427949,25428048..25428317) /locus_tag="TCM_030019" /note="encoded by transcript variant 8; alternatively spliced; dbxref ricco:29933.m001448; paralog of Thecc1EG007869t1" /codon_start=1 /product="D6-type cyclin isoform 8" /protein_id="EOY28473.1" /db_xref="TAIR:AT4G03270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8Y921" /translation="MEYFDLEDPFTSLKEHQSDTISALFSSESDHMPSQNYLQCLKTS DFYVSFRQEAISLILQQGNPWVLRLLVIACISLAAKMKEIHFSSSNFQREEGFIFDAP AIQRMELLILDALNWRMRSVTPFSFICFFMSLFELKDPPLTQALKDRASNIIFQAHGE INLLEFKPSILAASALLLASHELFPLQFPSVETSILSCEYVNKESLLKCFNATQDMVV NQISESIVDTVSSSSTRTPLSVLDCHCTKAESESTTSTMGATAMAEKREIKRRKLNDF CSESTRVQISQIQPFG" CDS join(25426744..25426923,25427338..25427433, 25427526..25427727,25427819..25427949,25428081..25428317) /locus_tag="TCM_030019" /note="encoded by transcript variant 9; alternatively spliced; dbxref ricco:29933.m001448; paralog of Thecc1EG007869t1" /codon_start=1 /product="D6-type cyclin isoform 9" /protein_id="EOY28474.1" /db_xref="TAIR:AT4G03270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8Y921" /translation="MEYFDLEDPFTSLKEHQSDTISALFSSESDHMPSQNYLQCLKTS DFYVSFRQEAISLILQQGNPWVLRLLVIACISLAAKMKEIHFSSSNFQREEGFIFDAP AIQRMELLILDALNWRMRSVTPFSFICFFMSLFELKDPPLTQALKDRASNIIFQAHGE INLLEFKPSILAASALLLASHELFPLQFPSVETSILSCEYVNKDMVVNQISESIVDTV SSSSTRTPLSVLDCHCTKAESESTTSTMGATAMAEKREIKRRKLNDFCSESTRVQISQ IQPFG" CDS join(25426744..25426923,25427034..25427120, 25427338..25427433,25427526..25427724,25427819..25427949, 25428081..>25428170) /locus_tag="TCM_030019" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:29933.m001448; paralog of Thecc1EG007869t1" /codon_start=1 /product="D6-type cyclin, putative isoform 7" /protein_id="EOY28472.1" /db_xref="TAIR:AT4G03270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8Y918" /translation="MEYFDLEDPFTSLKEHQSDTISALFSSESDHMPSQNYLQCLKTS DFYVSFRQEAISLILQAQYSCNLDPYTPYLAVNYMDRFISRQDIPQGNPWVLRLLVIA CISLAAKMKEIHFSSSNFQREEGFIFDAPAIQRMELLILDALNWRMRSVTPFSFICFF MSLFELKDPPLTQALKDRASNIIFQAHEINLLEFKPSILAASALLLASHELFPLQFPS VETSILSCEYVNKDMVVNQISESIVDTVSSSSTRTPLSVLDCH" gene complement(25429192..25430991) /locus_tag="TCM_030020" /note="dbxref CacaoGD:Thecc1EG030020" mRNA complement(join(25429192..25430255,25430560..25430689, 25430824..25430991)) /locus_tag="TCM_030020" /product="MYB21, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g37900.1" /inference="similar to AA sequence:frave:gene30736" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11476t00001" CDS complement(join(25429727..25430255,25430560..25430689, 25430824..25430959)) /locus_tag="TCM_030020" /note="dbxref frave:gene30736" /codon_start=1 /product="MYB21, putative" /protein_id="EOY28475.1" /db_xref="TAIR:AT4G05100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2LME3" /translation="MAKASQSVEKRTLRKGPWSPDEDRKLIAYINRHGIWNWTEMAKP AGLQRSGKSCRLRWVNYLRPGIKRGNFTREEDETIIELHERLGNRWSVIASRLPGRTD NEIKNHWHTHLRKRLKYNSVSTSELFQISNVETVKKSSSEVDLPPAIAPANSESSSAI QLSQQFSTDSLPSSGSDPAAEIDKNQTEDTLVSSETFGELQSILEQQFTSEGSSTAEN YGAIYAEPGISATSSQLLWFQESMYQGNSCNDLWLNFLVKENMYAG" gene complement(25432244..25435053) /locus_tag="TCM_030021" /note="dbxref CacaoGD:Thecc1EG030021" mRNA complement(join(25432244..25432758,25432949..25433014, 25433723..25433887,25434044..25434107,25434667..25435053)) /locus_tag="TCM_030021" /product="PLAC8 family protein" /inference="alignment:exonerate- protein:2:ricco:29933.m001455" /inference="similar to AA sequence:Phytozome:GSVIVT01003677001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08509t00001" CDS complement(join(25432588..25432758,25432949..25433014, 25433723..25433887,25434044..25434107,25434667..25434959)) /locus_tag="TCM_030021" /codon_start=1 /product="PLAC8 family protein" /protein_id="EOY28476.1" /db_xref="Phytozome:GSVIVT01003677001" /db_xref="TAIR:AT1G11380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1U0" /translation="MAELEKQEKVVVNGKGEGGGGGEEEEEERLLEGMAVLDFDMLCS TVALQTQGKWRKLERAEDCLEQGNGDLGGVLRMWEGEVVLDFFDDRRVALESACCPCY RFGKNMRRAGFGCCFLQGTVYFILVVSAFLNFIAFIVTKRNCFLYFAVAFIISVGAYL GFFRTQIKRKFNIRGNDSLLDDCVYHLICPCCTLSQESRTLEMNNVQDGTWHGRGDTI CIGSYGEGNKAFFELQPPSPISIRTPEPRGVQNS" gene complement(25436469..25438967) /locus_tag="TCM_030022" /note="dbxref CacaoGD:Thecc1EG030022" mRNA complement(join(25436469..25437420,25438593..25438967)) /locus_tag="TCM_030022" /product="Phosphoinositide binding" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g07150.1" /inference="similar to AA sequence:Phytozome:GSVIVT01003678001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16896t1" CDS complement(join(25436745..25437420,25438593..25438831)) /locus_tag="TCM_030022" /codon_start=1 /product="Phosphoinositide binding" /protein_id="EOY28477.1" /db_xref="Phytozome:GSVIVT01003678001" /db_xref="TAIR:AT1G61620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SY88" /translation="MPQRHSKNNNDLAFFTYDEKRKLGYGTQKERLGKDSIKPFDACC LCLKPFIDPMSCQKGHAFCKECILECLLAQKKDIQRRVAAHTAQLKQEKEEEEEKLML QKARELDAFDQQNHGAVPQYNGRNYSRDKNGFHGANSVKVTSYEEEALRTMKAFWLPS ATPEASVKVEAPSTSTICPEGKEKLKLKSLFPIYFTEDDSEQKKSNSLDKTYICPSCK VTLTNTLSLVALSSCGHVFCKKCADRFMAVDKVCLVCDKACKERNLVTLEKGGTGFAG HDEHLEATDFKHLGSGTGLGLVRPAAKT" gene 25439826..25443450 /locus_tag="TCM_030023" /note="dbxref CacaoGD:Thecc1EG030023" mRNA join(25439826..25440621,25443159..25443450) /locus_tag="TCM_030023" /product="Adenine nucleotide alpha hydrolases-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400008985" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007846t3" /inference="similar to AA sequence:ricco:29933.m001457" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16891t1" CDS join(25439895..25440621,25443159..25443178) /locus_tag="TCM_030023" /note="dbxref ricco:29933.m001457; paralog of Thecc1EG007846t3" /codon_start=1 /product="Adenine nucleotide alpha hydrolases-like superfamily protein, putative" /protein_id="EOY28478.1" /db_xref="TAIR:AT1G11360.4" /db_xref="UniProtKB/TrEMBL:UniRef50_C0Z2J1" /translation="MAASPRKKNPSESSSDRQATAILVQPSSPRFPVTSSGAHRKIGI AVDLSDESAFAVKWAVHNYLRSGDTVILLHVRPTSVLYGADWGAIDVSLPDEDETQET KQKREEEFDLFTNKKMNDLALPLAESHIPFKVHVVKDHDMKERLCLEVERLGLSAVIL GSTGFGAAKRTAKGRLGSVSDYCVHHCVCPVIVVRFPQEEKETDGCGKVEGKIGFDKD GEVLCPLVEEEEQEFHDAMDKHSADMQKAS" gene complement(25445231..25453478) /locus_tag="TCM_030024" /note="dbxref CacaoGD:Thecc1EG030024" mRNA complement(join(25445231..25445904,25446026..25446728)) /locus_tag="TCM_030024" /product="B-box type zinc finger family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s02600.1" /inference="similar to AA sequence:Phytozome:Glyma15g07140.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1218t1; inference alignment:Newbler:10:TSA:cgbaP2_g10727t00001" mRNA complement(join(25445279..25445907,25446026..25446629, 25447964..25448075,25449628..25449879,25453138..25453478)) /locus_tag="TCM_030024" /product="B-box type zinc finger family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s02600.1" /inference="similar to AA sequence:Phytozome:Glyma15g07140.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10727t00001" CDS complement(join(25445743..25445907,25446026..25446629, 25447964..25448004)) /locus_tag="TCM_030024" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="B-box type zinc finger family protein, putative isoform 1" /protein_id="EOY28479.1" /db_xref="Phytozome:Glyma15g07140.1" /db_xref="TAIR:AT4G27310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SFE7" /translation="MGVELRCEDILELRNGTEHIGIKLSDAHGNSSLRAILSQNKKKK KMKKCELCNSLAKMYCESDLAILCWDCDSRVHGANFLVAKHLRTLLCHLCQSPTPWNG SGPKLGPTVSACDNCVNRNACREESNNEETHDEEDEDDDDDLDGEDDSEDDDGDNGDD EENQVVPWSSTPPDSSSSTSEECSTRFCSVQEGTSQSRTVLSLKRMRETEEPASRQAD DPGCSFSPQHQTQNLSNESASFDPFRSLKDQKITARDSLKRLQKGVVAGAI" CDS complement(join(25445743..25445904,25446026..25446535)) /locus_tag="TCM_030024" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="B-box type zinc finger family protein, putative isoform 2" /protein_id="EOY28480.1" /db_xref="Phytozome:Glyma15g07140.1" /db_xref="TAIR:AT4G27310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SFE7" /translation="MKKCELCNSLAKMYCESDLAILCWDCDSRVHGANFLVAKHLRTL LCHLCQSPTPWNGSGPKLGPTVSACDNCVNRNACREESNNEETHDEEDEDDDDDLDGE DDSEDDDGDNGDDEENQVVPWSSTPPDSSSSTSEECSTRFCSVQEGTSQSRTVLSLKR MRETEEPASRADDPGCSFSPQHQTQNLSNESASFDPFRSLKDQKITARDSLKRLQKGV VAGAI" mobile_element 25446188..25446264 /note="source:scaffold_5_CACTA_0606 2767 2840" /mobile_element_type="transposon:TIR/CACTA" gene complement(25449502..25449891) /locus_tag="TCM_030025" /note="dbxref CacaoGD:Thecc1EG030025" mRNA complement(25449502..25449891) /locus_tag="TCM_030025" /product="Calcium-binding EF-hand family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s03950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030026t1" /inference="similar to AA sequence:ricco:29933.m001459" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7913t2" CDS complement(25449545..25449886) /locus_tag="TCM_030025" /note="dbxref ricco:29933.m001459; paralog of Thecc1EG030026t1" /codon_start=1 /product="Calcium-binding EF-hand family protein" /protein_id="EOY28481.1" /db_xref="TAIR:AT4G27280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T906" /translation="MAAQNAIVFEDFFPAMVEKLGAEGFMKELINGFRLLMDGDKGMI TFESLKRNLALLGLQDMTDEELVCMLREGDLNGDGALDEMEFCTLMFRLSPALMKSSR KLLVEALINEM" gene complement(25453067..25453441) /locus_tag="TCM_030026" /note="dbxref CacaoGD:Thecc1EG030026" mRNA complement(25453067..25453441) /locus_tag="TCM_030026" /product="Calcium-binding EF-hand family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s03950.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030025t1" /inference="similar to AA sequence:ricco:29933.m001459" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7913t3" CDS complement(25453097..25453435) /locus_tag="TCM_030026" /note="dbxref ricco:29933.m001459; paralog of Thecc1EG030025t1" /codon_start=1 /product="Calcium-binding EF-hand family protein" /protein_id="EOY28482.1" /db_xref="TAIR:AT4G27280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T906" /translation="MASQNGVVFEDFFPAMVEKLGADGFMKELCNGFQLLVDGDKGVI TFESLKRNSALLGLQDMSDEEAVCMLREGDLDGDGALNEMEFCTLMLRLSPELMNSSR KLLVEAIVNF" mobile_element complement(25455247..25455421) /note="source:CACAO_PIF_E119_scaffold_3 2083 2268" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25455433..25455462 /note="source:scaffold_1_CACTA_0008 910 1026" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25455463..25455804 /note="source:INTACT687_F13_scaffold_3-int 1296 1642" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25455805..25455886 /note="source:scaffold_1_CACTA_0008 1027 1363" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25455929..25456200 /note="source:INTACT687_F13_scaffold_3-int 1677 2053" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25457786..25464109 /locus_tag="TCM_030027" /note="dbxref CacaoGD:Thecc1EG030027" mRNA join(25457786..25458022,25458151..25458264, 25458858..25458923,25459025..25459190,25460536..25461828, 25462020..25462127,25462279..25462523,25462598..25462808, 25462935..25463172,25463267..25463417,25463509..25464109) /locus_tag="TCM_030027" /product="Serine/threonine kinases,protein kinases,ATP binding,sugar binding,kinases,carbohydrate binding, putative" /inference="alignment:exonerate- protein:2:ricco:29933.m001462.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032457t1" /inference="similar to AA sequence:ricco:29933.m001462" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.30 coverage" CDS join(25457816..25458022,25458151..25458264, 25458858..25458923,25459025..25459190,25460536..25461828, 25462020..25462127,25462279..25462523,25462598..25462808, 25462935..25463172,25463267..25463417,25463509..25463817) /locus_tag="TCM_030027" /note="dbxref ricco:29933.m001462; paralog of Thecc1EG032457t1" /codon_start=1 /product="Serine/threonine kinases,protein kinases,ATP binding,sugar binding,kinases,carbohydrate binding, putative" /protein_id="EOY28483.1" /db_xref="TAIR:AT1G11300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1U4" /translation="MVVILLLVGRRKEETCSEVLSHNVLEKCQSTGVKFQELQLLDFE KLATATNKFHTANKLGKGGFGVVYKFQDGQEIAVKSLSRASGQGIEEFINEAVVISQL QHRNLIVTGRGNSSFLDDEHSLSLLGYARKLWSDGVILALIDPAISDPSSHKEISRCL HVGLLCVQYFAKDRPTMSTGTLMLNKQFSYGGSGTLPLALLLLSCFCLQFGSGVDSTI TSSKSIKDPEAIISDRGVFRLGFFSLANSTNRYVGIWYNRIPVQTVIWVANKNKPLRD SSGILTIFEDGNLVLLNGKKQILWSSNVTNPISNASAQLLDSGNLVLLGSTSRTIMWE SFNHRSNTLVQNAKLRTDIRPGEKLRITSWKSPSDPSDGNVSAGIDPLNIPEAFIWNN NRPYWRSGPWNGQVFIGVPQIYSVYLDGFSLIDDKQGSIYISFAFANLSLSYILLDSQ GNLALRAWDDKQGDWVTFWSLPETECDVYGQCGAFGSCDSLKPSICSCLRGFEPKIIE EWNRGNWTSGCVRSKPLQCERVNNSSELGKEDGFLKLGMMKVPDFAQWSRAGSEYECE EFCLRNCSCIAYAYDAGIGCMSWSGKLIDIQKFPRGGKDLYIRVAHSELDKRTDTKTI IIIALIVGTSIIPICVFFSWKRMPKLRVAYRSLTTGFISARKEKGGEQLWLSRGKARP NFVSDNVHGDNINQANHQELPLFNFEELATATNNFHPTNKLGQGGFGPVYRGKLQNGK EIAVKRLSRASGQGLEELMNEVVVISKLQHRNLVRLLGCCVEEDEKMLVYEYMTNKSL DAFLFDPVQQEILDWRKRFNIIEGISRGLLYLHRDSRLRIIHRDLKASNILLDEELNP KISDFGMARIFGGNENQANTTKVVGTYGYMPPEYAMAGRFSEKSDVFSYGVLLLEIVS GRKNTSFYGNEDSISLLGYVWKLWNEDNILALLHTGLYDPCYQREIVKCIHAGLLCVQ EFAEDRPTISTVISMLNSEIVDLPAPKQPAYTGRLIASGARSPQNNLNHCSINKVTLT TVEGR" gene 25464156..25471287 /locus_tag="TCM_030028" /note="dbxref CacaoGD:Thecc1EG030028" mRNA join(25464156..25464230,25466767..25468234, 25468579..25468689,25468794..25469032,25469120..25469330, 25469462..25469699,25469810..25469957,25470084..25470377, 25470483..25471287) /locus_tag="TCM_030028" /product="S-locus lectin protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29933.m001463" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032457t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s02690.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc792t3" CDS join(25466917..25468234,25468579..25468689, 25468794..25469032,25469120..25469330,25469462..25469699, 25469810..25469957,25470084..25470377,25470483..25470485) /locus_tag="TCM_030028" /note="paralog of Thecc1EG032457t1" /codon_start=1 /product="S-locus lectin protein kinase family protein, putative" /protein_id="EOY28484.1" /db_xref="Phytozome:POPTR_0004s02690.1" /db_xref="TAIR:AT4G21390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1U8" /translation="METNSNKNPVSFFLASFIFLLYFLPQFCHAVDRITPGQTIRDGD TLVSRAEIFELGFFNPENSTFIFVGIWYRIDVKAVVWVANRDRPISGRSGVLRIGVDG NLVVLDGNNNLVWSSNVSGLSNNTTAVLWDTGNFVLSSNESVDDTHWQSFDNPTDTFL PGMRVPVNSAIGEYPAFHAWKSASDPSPGNYSMGVDPHGGPQIVIWDHGRRRWRSGQW NGVIFTGVPNMSSIASFLYGFKLSQLDENRTQYFTYYPPNPSNLLRFRIGWEGREQQL MWDDGEKKWKVLQQQPDLANQCELYNHCGNYATCDNLNSPKCNCLKGFRPKLQDQWNR GNWSGGCERRTELQCQRTNGAAGENGKPDGFKGLKCTKLPDLANLTLSAGNSEACRTS CLGNCSCRAYAFISGIGCMTWTVDLIDLHFDQSGSLQFFLRLHHSELDGRRKISILVI IIITVLGACFLVVSLWLLWRYRNKLKGLPAVSSMPCCKDDDVAVFDVSKSKEFSADLS GPSDILIDGNQINGPELPMFSFSCVATATENFCVANKLGQGGFGDVFKGELPGGQEIA VKRLSGHSGQGLEEFKNEIILIAKLQHRNLVRLLGCSIQGEEKMLIYEYMPNKSLDNF LFDEAKQAQLDWRTRLSIIEGIARGLLYLHRDSRLRIIHRDLKTSNILLDAEMNPKIS DFGMARIFGGNQNEANTVRVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEIVSGRR NTSVRSSQHTSLIGYAWHLWSEDKAMDLVDPSIQDSCFPTEVLKCIHIGMLCVQDNAM HRPTMAAVVLMLESETPTLPMPRQPTYTSMRSSIDAEFTMDGQEIVSSNDVTVTM" gene 25471216..25476309 /locus_tag="TCM_030029" /note="dbxref CacaoGD:Thecc1EG030029" mRNA join(25471216..25472974,25473079..25473192, 25473934..25474136,25474217..25474427,25474516..25474753, 25475009..25475156,25475239..25476309) /locus_tag="TCM_030029" /product="S-locus-specific glycoprotein S6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030033t1" /inference="similar to AA sequence:frave:gene30636" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1503t8" CDS join(25471672..25472974,25473079..25473192, 25473934..25474136,25474217..25474427,25474516..25474753, 25475009..25475156,25475239..25475544) /locus_tag="TCM_030029" /note="dbxref frave:gene30636; paralog of Thecc1EG030033t1" /codon_start=1 /product="S-locus-specific glycoprotein S6" /protein_id="EOY28485.1" /db_xref="TAIR:AT1G61390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SFF5" /translation="MSSFYVSVFSFSLLLNLLFFQFCTAIDVLTPSQALSQGQTLTSP GNVFELGFVSFNDSSLYYVGIWHKNIVPRRVLWVANREKPLTDSLSSSLMIAGDGNLK LMNGMQDIVWSTKVPIQSNNSVAVLLDSGNFVLKDNSSGQISWESFSHPGDTFWPGMM IGMNVKTGEKRFLISSKSKDDPSPGSFVGGTGAQSSPIIEGFIWSGTRPYWRSRQWNG IKFLGMPHMSAVYTNGISIVSDSQEGSQYVALNVVNTSLIEVVFLSPEGYLQLIIWDE GEKEWRVQLQEPESQCDIYGACGPNGICNKEKSPICRCLEGFEPSSSEEWSRGNWTNG CVRRVELNCDKNISLLASSRNKTDGFFKLSGLKLPAHSQYLKFEVDTEACKFSCLNNC SCVAFASVTGIGCMLWTEDLMDVQAFSSTGEDLFVRVAHAELGKEKHKSKVMFPVAAS CTLIVLSTLLVYGFFRYRANHKGESREALHESDSADATNPLRDTRKGIAGSNIIKQKD SLIFDFNHVVVATDNFSLTNKLGEGGFGPVYKGKLQNGKEIAVKRLSSHSGQGMEEFK NEIVFISKLQHRNLVRLLGCCVEGEEKLLIYEYMPNKSLDTFLFDPTRKTQLVWAKRF SIIQGIARGLVYLHRDSFLRVIHRDLKASNVLLDEDMNPKISDFGLARTFQNTQELAN TRRVVGTLGYMSPEYVIGGRFSEKSDVFSFGVLLLEIVSGEKNSGFQNDEHQNLLGYA WRLWCEGRVLNLIDQALGDSFCNVEVMRCIHVGLLCVQENPADRPSTPAVILQLTSGT SLPQPKQPAFAFDNSRYSSHRSNSNSYIGSVNEVKLSATEGR" gene 25476056..25484927 /locus_tag="TCM_030030" /note="dbxref CacaoGD:Thecc1EG030030" mRNA join(25476056..25476577,25477711..25477960, 25481411..25482283,25483359..25483456,25483537..25483747, 25483836..25483889,25483982..25484072,25484328..25484476, 25484559..25484927) /locus_tag="TCM_030030" /product="S-locus-specific glycoprotein S6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01027100001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030029t1" /inference="similar to AA sequence:ricco:29933.m001466" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1420t6" mobile_element 25478063..25478499 /note="source:CACAO_PIF_E220_scaffold_7 51 525" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS join(25481458..25482283,25483359..25483456, 25483537..25483747,25483836..25483889,25483982..25484072, 25484328..25484454) /locus_tag="TCM_030030" /note="dbxref ricco:29933.m001466; paralog of Thecc1EG030029t1" /codon_start=1 /product="S-locus-specific glycoprotein S6" /protein_id="EOY28486.1" /db_xref="TAIR:AT1G61380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GZ97" /translation="MIGMNVKTGEKRFLISSKSKDDPSPGSFVGGTGAQSGPIIEGFI WNGTRPYWRSGQWNGIKFLGMPHMSAVYTNGISIVSVSPEGNQYVTLNVFNTSLIKVV FLSPEGYLQIIIWDEGEKEWRVQLQEPESQCDIYGACGPNGICNTDESPICRCLEGFE PSSSEEWSRGNWTNGCVRRVELNCDKNISLLASSRDKTDGFLKLSGLKLPAHFQYLKT DVYNEACEFWCLNNCSCVAFASVTGIGCMFWTGDLMDVRAFSSIGEDLFVRVAHAELD SLIFDFNHVVVATDNFSLTNKLGEGGFGPVYKGKLQNGKEIAVKRLSSRSGQGMEEFK NEIVFISKLQHRNLVRLLGCCVEGEEKLLIYEYMPNKSLDTFLFDPTRKTQLVWAKRF SIIQDMNPKISDFGLARTFQKTQELANTRRVVGTLGYMSPEYVIGGRFSEKSDVFSFG VLLLEIVSGKKNSGFQND" gene 25485376..25492091 /locus_tag="TCM_030031" /note="dbxref CacaoGD:Thecc1EG030031" mRNA join(25485376..25485916,25487831..25489139, 25489255..25489365,25489516..25489724,25489822..25490032, 25490707..25490944,25491204..25491354,25491440..25491525, 25491610..25492091) /locus_tag="TCM_030031" /product="S-locus-specific glycoprotein S6, putative" /inference="alignment:exonerate-protein:2:frave:gene30632" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030033t1" /inference="similar to AA sequence:ricco:29933.m001466" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.19 coverage" mobile_element complement(25487478..25487571) /note="source:CACAO_Mutator_E39_scaffold_1 4418 4503" /mobile_element_type="transposon:TIR/Mutator" CDS join(25487846..25489139,25489255..25489365, 25489516..25489724,25489822..25490032,25490707..25490944, 25491204..25491354,25491440..25491525,25491610..25491739) /locus_tag="TCM_030031" /note="dbxref ricco:29933.m001466; paralog of Thecc1EG030033t1" /codon_start=1 /product="S-locus-specific glycoprotein S6, putative" /protein_id="EOY28487.1" /db_xref="TAIR:AT1G61370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SFF5" /translation="MGGEKRSSVLLSSMSRLFNLLLLRCCAATNNITLSRPLSQDQIL TSPGQFFVLGFFQPNNSANRYLGIWYKDIAPKKIVWVANREKPVTNSSASLTIGSDGN LKLVNGNQDTLWSTNVSVQSNSSVAVLSDNGNFELIDGISGANLWQSFEHPYDTFLLG ASIGYNFKTGERRFLTSWKSDSDPSPGNFVVGLLPGSTIQAFVWKDRLPYWRSGQWDK TKFIGIPEMDSSSSSVFDLREDRHRGTVYLYTDTYNQSVASNMVISSVGTLQWVHWER GQGWIVGWEAQQNPCDVYGVCGSFGVCSPSESPICNCLRGFTPKSDEEWSKGNWTGGC MRRTNLSCEANTSSKPTNTRKTDRFWTMDRMKLPDLSEYLEIDDDLCQEWCLNNCSCM GYAIVYGIGCLVWTENIIDMQKFPFGGEEFFLRLAHTEFADERLKEKLIISLTTISCI IILGILVYGIRRKRSTKLSKRKRIFKHFDLSGNETSSEILPGNTMRSHLELEDRSELP MFDLNTILVATDNFSTTNKLGQGGFGPVYKGKLHDGKYVAVKRLSSSSGQGLEEFKNE VMLISKLQHRNLVRLFGYCIEKEERILIYELMANKSLDTFLFDPTKRADLHWPKRFNI IQGVARGLLYLHRDSCLRVIHRDLKVSNILLDDKMNPKISDFGLARKFQGTQLLANTH RVVGTLGYMSPEYALSGIFSEKSDVFSFGVLLLEIVSGRKITASYDDDKRISLIGYAW RLRSESKELDLLDEAMADSFSSSEVTSEAELPRPKQPTFTFQTGFYSEKSDSNHLLSA CELTESVLEGR" gene 25491846..25496679 /locus_tag="TCM_030032" /note="dbxref CacaoGD:Thecc1EG030032" mRNA join(25491846..25493596,25493785..25493901, 25494505..25494716,25494811..25495021,25495286..25495523, 25495730..25495880,25495966..25496679) /locus_tag="TCM_030032" /product="S-locus-specific glycoprotein S6, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030033t1" /inference="similar to AA sequence:ricco:29933.m001466" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc4625t1" CDS join(25492297..25493596,25493785..25493901, 25494505..25494716,25494811..25495021,25495286..25495523, 25495730..25495880,25495966..25496262) /locus_tag="TCM_030032" /note="dbxref ricco:29933.m001466; paralog of Thecc1EG030033t1" /codon_start=1 /product="S-locus-specific glycoprotein S6, putative" /protein_id="EOY28488.1" /db_xref="TAIR:AT1G61370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SFF5" /translation="MGGKNRICSILHSPMSLLFNLLLLQCCTATNNITLDRPLSQEQV LTSPGQNFELGFFRPNNSSANQYVGIWYKNITPRTVVWIANREKPVTDSLASLTIGSD GNLKLVDGLHDTLWSSNVSAPSYGSVAVLSDDGNFALKDNISGDNLWQSFEHPSDTFL LGSSIGFNTKTGERRVMTSWKSDTDPSPGSFVVGLAQRSPPQAFIWKGSVPYWRSGEW DKTNFIGIQQLDSSYSSMFDLIEDIEQGTVYLISNPHNQSDFEKMIVSWMGPLKLTFW EDQRWNVEWEAPKNPCDVYGTCGPFGVCKASESPICRCLKGFVPKLDGEWRKGNWTGG CVRRTELLCEGNTSNEATDRGKADKFWKMDRMKLPDFSQYKNLDYPIPCQQWCLDNCS CKAYATIEGIGCLVWTGNLTDMQEFSFGGEAFFLRLAPSEFAHERLREKLIISLTTIS CIITLALGILIYGLHRKRSQKISEETKISEDLELAAEIESSSEILPSYMLRSHLELED TLELPIFDLNSILIATDNFSLDNKLGQGGFGPVYKGYLPDGKYVAVKRLSSTSGQGKE EFKNEVMLISKLQHRNLVRLFGYCSEKEERILIYEYMANKSLDKFLFDPTKRAELCWA MRFNIIQGVARGLVYLHRDSCLRVIHRDLKVSNILLDDKMNPKISDFGLARIFEGTQY LANTHRVVGTLGYMSPEYALTGMFSEKSDVFSFGVLLLEIVSGRKISTSYFKDQHLCL LSYAWQLWHESKEMELLDEALADSFSSSEVKRCIHVGLLCIQDYAEHRPSMSTVVSML SSETELPQPKQPILFQSALKSDRSESNSIWSTGQITESVLEGR" gene 25496896..25501240 /locus_tag="TCM_030033" /note="dbxref CacaoGD:Thecc1EG030033" mRNA join(25496896..25498783,25498900..25499010, 25499162..25499370,25499468..25499678,25500110..25500347, 25500600..25500750,25500837..25501240) /locus_tag="TCM_030033" /product="S-locus-specific glycoprotein S6, putative" /inference="alignment:exonerate-protein:2:frave:gene30632" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030031t1" /inference="similar to AA sequence:ricco:29933.m001466" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc776t12" CDS join(25497487..25498783,25498900..25499010, 25499162..25499370,25499468..25499678,25500110..25500347, 25500600..25500750,25500837..25501136) /locus_tag="TCM_030033" /note="dbxref ricco:29933.m001466; paralog of Thecc1EG030031t1" /codon_start=1 /product="S-locus-specific glycoprotein S6, putative" /protein_id="EOY28489.1" /db_xref="TAIR:AT1G61370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SFF5" /translation="MGGEQRRWGVFLSSMSLLLNLLLLHCCAATNNITLSRPLSQDQI LTSPGQFFVLGFFQPNNSANRYVGIWYKDKAPTKIVWVANREKPVTNSSASLTIGSDG NLKLVDGNQDALWSTNVSVPSNSSVAVLSDNGNFELIDGISGANLWQSFEHPYDTFLL GASLGYNFKTGERRFLTSWKSDSDPSPGNFVVGLLPGSTIQAFVWKDRLPYWRSGQWD KTKFIGIPEMDSSSSSIFDLREDLQQGTVYLYTNTYNQSVALNMVISSVGTLQLEHWE RGQGWIVDWEAPQNPCDVYGVCGSFGVCSPSESPICSCLRGFTPKSDEEWSRGNWTGG CMRRTNLSCEENTSSKPTNTGKADRFWTMDRMKLPDLSEYLEIDSDLCQEWCMNNCSC MGYAIVYGIGCLVWTGNITDMQKFPFGGEEFFIRLAHSEFADERLKEKLIISLTTISC IIILGILVYGICRKRFIKIGKRKRIFKHFDLAGNETSSEILTGNTLRSHLELEDPSEL PVFDLNSILVATDNFSITNKLGQGGFGPVYKGKLHDGKYVAVKRLSSSSGQGIEEFKN EVMLISKLQHRNLVRLFGYCIEKEERMLIYEFMANKSLDTFLFDPTKRADLHWPKRFN IIQGVARGLLYLHRDSCLRVVHRDLKVSNILLDDKMNPKISDFGLARIFQGTQLLANT HRVVGTLGYMSPEYALSGIFSEKSDVFSFGVLLLEIVNGRKITASYYHDKHISLIDYA WQLWSESKELDLLDEALADSFSSSEVTRCIHIALLCVQDHAENRPNMSAVVSMLSSEA ELPRPKQPTFTFQTGFYSEKCDSNHFLSACELTESVLEGR" gene complement(25501247..25502641) /locus_tag="TCM_030034" /note="dbxref CacaoGD:Thecc1EG030034" mRNA complement(join(25501247..25501274,25502057..25502251, 25502463..25502641)) /locus_tag="TCM_030034" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc776t15" CDS complement(join(25502083..25502251,25502463..25502560)) /locus_tag="TCM_030034" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28490.1" /translation="MVISYSSHSSLTLALGVPLSNWWSWFVHFEDIWNVLYGSPLSLG FSVGNGHFTFHKENERFHTRNGAGLGYGPRKGTLLGQSWTLPPN" gene 25502386..25507856 /locus_tag="TCM_030035" /note="dbxref CacaoGD:Thecc1EG030035" mRNA join(25502386..25503821,25505952..25506083, 25506168..25506358,25506450..25506660,25506774..25507011, 25507100..25507250,25507359..25507856) /locus_tag="TCM_030035" /product="Receptor kinase 3" /inference="alignment:exonerate- protein:2:ricco:29842.m003714" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030044t1" /inference="similar to AA sequence:ricco:29842.m003714" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08288t00001" CDS join(25502537..25503821,25505952..25506083, 25506168..25506358,25506450..25506660,25506774..25507011, 25507100..25507250,25507359..25507673) /locus_tag="TCM_030035" /note="dbxref ricco:29842.m003714; paralog of Thecc1EG030044t1" /codon_start=1 /product="Receptor kinase 3" /protein_id="EOY28491.1" /db_xref="TAIR:AT4G21380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYR2" /translation="MGTIRNHHFCSFFLFFAFLAIFPTISFSIDTLTATQSIINNQTL VSPGDVFEFGFFTLENPGEWYVGIWYKNIPVRTYVWIANRDKPLANSSGIFKLEDRNI VLLDQGQNLVWSSNITKGDNPLAQLLDSGNLVLREANINDETNHYLWQSFDYPTDTLL PDMKLGWDLNAGFNRFLTAWRTKGDPSSGDFSFKLDYHGFPEIFLWNKQRREYRSGPW NGLRFSGVPEMKPLDYISFNFVTNQDEVYYSFSITNKNLFSRLIVTPTGTLQRLTWIP DTEQWNPFWYAPKDQCDNYRECGQYGICDSNASPVCKCPKGFSPKNQQAWNLRDGSGG CIRKTDLDCTKDKFLHLPNMKLPEGTSSFVDKNMTLKDCAALCSRNCSCTAYSNSDIR NGGKGCVIWIGDLIDMRQYTDGGGQDLFVRLAASDLGDGGNTTALIIGITVSAGVLLL GLIAYVVWKRKAMQNKGKIGKKGPHERSQDFLLNEVVISSKKEFSAESQPDELELPLF DFDTIATATDNFSDEKKLGQGGFGCVYMGRLVEGQEIAVKRLSKNSGQGTEEFKNEVR LIARLQHRNLVRLLGCCIEMDEKMLVYEYMEHRSLDSVLFNKARSSLLNWQRRFNIIC GTARGLLYLHQDSRFRIIHRDLKASNILLDGEMNPKISDFGMARIFGGDQTEANTKRV VGTYGYMSPEYAMDGLFSAKSDVFSFGVLVLEVVSGKKNRGFYHSNSELNLLGHAWRL WKEGKGMDLIDSAVGDSYNAQEVLRCIQVGLLCVQERAEDRPSMSTVVLMLNSETATM PQPKTPGFCLGRRSTLETDSSNSKQDESCTVNQVTVTMLDAR" gene 25504760..25505680 /locus_tag="TCM_030036" /note="dbxref CacaoGD:Thecc1EG030036" mRNA 25504760..25505680 /locus_tag="TCM_030036" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc776t13" CDS 25505371..25505580 /locus_tag="TCM_030036" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28492.1" /translation="MDGIGRPTEITLQLKSSENLWSEVNALEGVDFGKTALAVCFGEA TLITGSVTAVSFMALHNSLFVLCGR" gene 25506949..25512529 /locus_tag="TCM_030037" /note="dbxref CacaoGD:Thecc1EG030037" mRNA join(25506949..25507011,25507100..25507250, 25507359..25509646,25510228..25510359,25510627..25510784, 25510947..25511157,25511284..25511495,25511575..>25511600) /locus_tag="TCM_030037" /product="S-locus lectin protein kinase family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400067047" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030038t1" /inference="similar to AA sequence:frave:gene30639" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc760t16; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc760t16" mRNA join(25508272..25509646,25510228..25510359, 25510627..25510784,25510947..25511157,25511227..25511495, 25511575..25511725,25511840..25512529) /locus_tag="TCM_030037" /product="S-locus lectin protein kinase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400067047" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030038t1" /inference="similar to AA sequence:frave:gene30639" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc760t16" CDS join(25508320..25509646,25510228..25510359, 25510627..25510784,25510947..25511157,25511227..25511495, 25511575..25511700) /locus_tag="TCM_030037" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene30639; paralog of Thecc1EG030038t1" /codon_start=1 /product="S-locus lectin protein kinase family protein, putative isoform 1" /protein_id="EOY28493.1" /db_xref="TAIR:AT4G27290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BXA4" /translation="MKRPKNQSSTTRISSSASISYNMKDKRFPFILASCNIFFSFIAT TATLTTDILAANSTLKDGQTLVSPGQIFELGFFSPGNSSHRYLGIWYKNIPLTVVWVA NRNSPITSTAGSLVFSPQGSLSLLNDTVFVWSVNVTRVLSNPILQLLDNGNLALTDSS GAYIWQSFDYITDNLLPGMKLGWNLKTGLNRYMTSWIDTDDPAAGEFTVSLEQPETPQ FVVRKGTQKQNRWGPWDGVRFSGGKRLKPNPVYLPMFNSSPEEIYYSFEVIESSVLSR FVVTPLGLIQHLTWNNHSNEWVVIVSPQRDACDRYELCGSYGNCYSSDPNCRCLKGFK PKSPEDWRLIDWSGGCVRNRDLNCSNADGFVKYERMKLPDNAHLAANRSLSLEECEAE CQKNCSCMAYTRIDIHGNGRDCILWFGDLVDLRKYPEGEDLYIRMARAELESISDAKR KEKVKIALVITMLSVFGMLLFGVAGWCNFQVRGKMRARNGNNMFWDAKEQYQKEDLEL PLFDLSTVSAATSKFSFEQKIGEGGFGPVYKGVLPTGKEIAVKRLSKNSGQGLQEFKN EVILISKLQHRNLVKLLGCCIQGEERMLIYEYLPNKSLDCFLFGLDYFDYLTSPDKTR RNFLGWKKRFEIVMGIARGLLYLHQDSRLRIIHRDLKASNILLDDQMHPKISDFGIAK IFGGERTQKDQKSNWNIWLYVSRICNERTLFSEIGCIQLRGFGVRDSKWQKKLGISSP " CDS join(25508320..25509646,25510228..25510359, 25510627..25510784,25510947..25511157,25511284..25511495, 25511575..>25511598) /locus_tag="TCM_030037" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene30639; paralog of Thecc1EG030038t1" /codon_start=1 /product="S-locus lectin protein kinase family protein, putative isoform 2" /protein_id="EOY28494.1" /db_xref="TAIR:AT4G27290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BXA4" /translation="MKRPKNQSSTTRISSSASISYNMKDKRFPFILASCNIFFSFIAT TATLTTDILAANSTLKDGQTLVSPGQIFELGFFSPGNSSHRYLGIWYKNIPLTVVWVA NRNSPITSTAGSLVFSPQGSLSLLNDTVFVWSVNVTRVLSNPILQLLDNGNLALTDSS GAYIWQSFDYITDNLLPGMKLGWNLKTGLNRYMTSWIDTDDPAAGEFTVSLEQPETPQ FVVRKGTQKQNRWGPWDGVRFSGGKRLKPNPVYLPMFNSSPEEIYYSFEVIESSVLSR FVVTPLGLIQHLTWNNHSNEWVVIVSPQRDACDRYELCGSYGNCYSSDPNCRCLKGFK PKSPEDWRLIDWSGGCVRNRDLNCSNADGFVKYERMKLPDNAHLAANRSLSLEECEAE CQKNCSCMAYTRIDIHGNGRDCILWFGDLVDLRKYPEGEDLYIRMARAELESISDAKR KEKVKIALVITMLSVFGMLLFGVAGWCNFQVRGKMRARNGNNMFWDAKEQYQKEDLEL PLFDLSTVSAATSKFSFEQKIGEGGFGPVYKGVLPTGKEIAVKRLSKNSGQGLQEFKN EVILISKLQHRNLVKLLGCCIQGEERMLIYEYLPNKSLDCFLFGWKKRFEIVMGIARG LLYLHQDSRLRIIHRDLKASNILLDDQMHPKISDFGIAKIFGGERTQKDQKSNWNIWL YVSRIC" gene 25512576..25517829 /locus_tag="TCM_030038" /note="dbxref CacaoGD:Thecc1EG030038" mRNA join(25512576..25514210,25514796..25514930, 25515674..25515834,25515935..25516145,25516272..25516506, 25516578..25516728,25516843..25517829) /locus_tag="TCM_030038" /product="Receptor kinase 3 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene30639" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030037t1" /inference="similar to AA sequence:frave:gene30639" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1325t3" mRNA join(25512884..25514210,25514796..25514930, 25515677..25515834,25515935..25516145,25516272..>25516449) /locus_tag="TCM_030038" /product="Receptor kinase 3 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene30639" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g32280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030037t1" /inference="similar to AA sequence:frave:gene30639" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1380t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1325t3" CDS join(25512944..25514210,25514796..25514930, 25515674..25515834,25515935..25516145,25516272..25516506, 25516578..25516728,25516843..25517148) /locus_tag="TCM_030038" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene30639; paralog of Thecc1EG030037t1" /codon_start=1 /product="Receptor kinase 3 isoform 1" /protein_id="EOY28495.1" /db_xref="TAIR:AT4G21380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BXA4" /translation="MKFSFSLVIYYVFTSLAFQIPSATAADTLAANNTLKDGQTLVSS GQRFEFGFFSLGSSSRRYLGIWYKNINPLTVVWVANRDDPITSSSGSLVFNPQGALSL SNGTVFIWFVNVTRALSNPVLQLLDNGNLVLTGDGGDYLWQSFDYITDTLLPGMKLGW NLKTGLKRDMTSWLSSDDPATGEFTFSLDPPEAPELVLRKGDQKEYRWGPWDGVRFSG SNELRPNPVYTPEFNSSREEIYYTFKVDDSSILSRFIVTSQGLLQYLTWTNHSNEWAL MVTLQRDSCDRYESCGPYGNCYADDPNCRCLRGFTPKSPESWRLIDWSDGCVRKRGLD CQNGDGFVKYDRMKLPDNSHLVTNRNFSLSLEECEAECLKNCSCMAYTKIDIHGNGGD CVMWFGDLVDMKYFPNGGSNLYIRMAQAELESIADAKRKKRVKVAALITMSIVLGMLL GVLVWRIYLTRKAKIRRAAISENNSYRDTNDETQEGDLELPLFGLDVVSAATNKFSFE KKIGEGGFGPVYKGVLPTGQEVAVKRLSQNSGQGLREFKNEVILISKLQHRNLVKLLG CCIQGEERMLIYEYQPNKSLDQFLFDKTRRKFLTWKKRFDIVIGIARGLLYLHQDSRL RIIHRDLKASNILLDGEMNPKISDFGIARIFGEKTQEMTKRVIGTYGYMSPEYAMGGH FSVKSDVFSYGVLVLEIVSGKKNWGFYHPDHDLNLLGHTWKLWNEGNPLELMDELMED TISENEVVRCIQVGLLCVQQRMEDRPTMSSVLLMLSNESIMVPQPKEPGFCTEISSGG DTSSSVNNLHTANELTVTDLGGR" CDS join(25512944..25514210,25514796..25514930, 25515677..25515834,25515935..25516145,25516272..>25516447) /locus_tag="TCM_030038" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene30639; paralog of Thecc1EG030037t1" /codon_start=1 /product="Receptor kinase 3 isoform 2" /protein_id="EOY28496.1" /db_xref="TAIR:AT4G27290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BXA4" /translation="MKFSFSLVIYYVFTSLAFQIPSATAADTLAANNTLKDGQTLVSS GQRFEFGFFSLGSSSRRYLGIWYKNINPLTVVWVANRDDPITSSSGSLVFNPQGALSL SNGTVFIWFVNVTRALSNPVLQLLDNGNLVLTGDGGDYLWQSFDYITDTLLPGMKLGW NLKTGLKRDMTSWLSSDDPATGEFTFSLDPPEAPELVLRKGDQKEYRWGPWDGVRFSG SNELRPNPVYTPEFNSSREEIYYTFKVDDSSILSRFIVTSQGLLQYLTWTNHSNEWAL MVTLQRDSCDRYESCGPYGNCYADDPNCRCLRGFTPKSPESWRLIDWSDGCVRKRGLD CQNGDGFVKYDRMKLPDNSHLVTNRNFSLSLEECEAECLKNCSCMAYTKIDIHGNGGD CVMWFGDLVDMKYFPNGGSNLYIRMAQAELESIADAKRKKRVKVAALITMSIVLGMLL GVLVWRIYLTRKAKIRRAISENNSYRDTNDETQEGDLELPLFGLDVVSAATNKFSFEK KIGEGGFGPVYKGVLPTGQEVAVKRLSQNSGQGLREFKNEVILISKLQHRNLVKLLGC CIQGEERMLIYEYQPNKSLDQFLFDKTRRKFLTWKKRFDIVIGIARGLLYLHQDSRLR IIHRDLKASNILLDGEMNPKISDFG" gene 25517876..25522620 /locus_tag="TCM_030039" /note="dbxref CacaoGD:Thecc1EG030039" mRNA join(25517876..25518053,25518958..25519278, 25519667..25519871,25520909..25520930,25521083..25521240, 25521360..25521570,25521799..25521895,25522001..25522151, 25522261..25522620) /locus_tag="TCM_030039" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g32440.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030040t1" /inference="similar to AA sequence:ricco:29842.m003713" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS join(25517980..25518053,25518958..25519278, 25519667..25519871,25520909..25520930,25521083..25521240, 25521360..25521570,25521799..25521895,25522001..25522151, 25522261..25522335) /locus_tag="TCM_030039" /note="dbxref ricco:29842.m003713; paralog of Thecc1EG030040t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28497.1" /translation="MEDFLDNIKQQIVYVDGLPIKHQRGDNGEGLVSAGQSFVLGFFS PWNSNNHYVGIWFKDVPQQTVIWVANRDDQVTDSSGTLTITSTGNMFIHKNESTVPIW SSNSSTTSNNSVLKLLDTGNLVVKDANSDRRGEWVVVYNLQRDECDAYAKCGPNGICN VNKELYCRCPSGFTPKRPEDWNGFDWSGGCSRRIELNYSMRGHKRRQVQIVHNPNQGY DPGAGEEALDLPSFDMVTVATATNDYLFTNKIGAGGFGHVYKGKLPTGQEIAVKRLSK DSQQGLQEFKNEVILIAKLQHRNLVKLLGCCIRGEEKMLIYEYMHNRSLDFHLYNRAM NPKISDFGLARIFGADQTEANMTRVVGTYGYMSPEYAIEGLFLVKSDVFSFGVLVLEI ISGKRKRGFYHSNHDMNLLGHAWKLWNEDKALQLGDALMEKSVTT" mobile_element complement(25518719..25518863) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3198 3307" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25522406..25529215 /locus_tag="TCM_030040" /note="dbxref CacaoGD:Thecc1EG030040" mRNA join(25522406..25522540,25523333..25524733, 25525604..25525729,25526018..25526172,25526263..25526473, 25526554..25526791,25526891..25527041,25528699..25529215) /locus_tag="TCM_030040" /product="S-locus lectin protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s03750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030044t1" /inference="similar to AA sequence:ricco:29842.m003713" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7846t1" CDS join(25523467..25524733,25525604..25525729, 25526018..25526172,25526263..25526473,25526554..25526791, 25526891..25527041,25528699..25529007) /locus_tag="TCM_030040" /note="dbxref ricco:29842.m003713; paralog of Thecc1EG030044t1" /codon_start=1 /product="S-locus lectin protein kinase family protein" /protein_id="EOY28498.1" /db_xref="TAIR:AT4G27290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYR3" /translation="MEARLSIFTCFTLLSFLLKPSFAIDTIASNQNLTDTGETLVSAG GHFELGFFSPWNSNYRYIGIWFKNVPQQTVFWVANKNNPLTDSSGVLMITATGNVIIL RNQSSNPVWFSNSSATSNNPVLQLLDTGNLVVKDVSSENYLWQSFDYPCDTLIPGMKL GWSLQTGDGWYLSSWRSLQDPSTGDYTYKVDHQGLPQLFARKGTEIVYRSGPWDGLRF GGSRRFEENAVFNPLFVSNTELIYYSFENLDKNTISRFVLNQSGVVEHVTWNDRRGEW AVIMIMQTVRCDEYALCGPNGFCDINRDSVCYCPFGFTPRVPRDWNALDWSEGCVART SWNCSSATKFFKFTGLKLPNHSEILDSNSMMSRSECEQACLRNCSCVAYAKVEVSGCV MWFGTLIDVRQYSREEYGKDLYVRMDASEFESNKNVKRRAVIISISVASGVLLLMTLT WCYLTRKRGLKKSPAQEMNNTHEFHPNPEEEDLDLPLFDWLTVASATNDFAFTNKIGE GGFGPVYRGKLQTGQEIAVKRLSKDSGQGLTEFKNEVIFIAKLQHRNLVRLLGCCIYG EERMLIYEYMPNRSLDRYIFDKTRGTSLNWQNRYDIINGIARGLLYLHRDSRLRIIHR DLKASNILLDGEMNPRISDFGLARTFGGDQSEANTSRIIGTYGYMSPEYAIEGLFSVK SDVFSFGVLVLEIVSGKRNRGFYHPDHDLNLLGHAWKLWNGGTPMEMIDPFMEKPVST LEVLRCIQVGLLCVQQRPEDRPTMSSVLLMLDSENPSLPQPKQPGFYTERFFTETDTS STGKMPCNSNEITISMLQGR" gene complement(25527165..25528255) /locus_tag="TCM_030041" /note="dbxref CacaoGD:Thecc1EG030041" mRNA complement(25527165..25528255) /locus_tag="TCM_030041" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040529t1" /inference="similar to AA sequence:Phytozome:GSVIVT01037631001" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7848t3" CDS complement(25527504..25528241) /locus_tag="TCM_030041" /note="paralog of Thecc1EG040529t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28499.1" /db_xref="Phytozome:GSVIVT01037631001" /translation="MKTYLRAFNLWEVVEMGGEPPVLRANPTIAQMKQHSEEVAKHYK ALSCLHSAVTDQIFTKIKACETAKAAWEKLREEFQVSERTRQIQVLNLLREFELLMMK ESENIKDYAEKVMGIVSKLRLLNEDLPEIRVVYKTFVSLPEKFEPKLCSIEESKDLSK LSLKELVNALQAVEQRWALRQEESTQGAFLATSRESSITGKKASHNNREIKSSDTRKL GKKGRFPPCPHCKKQNHSENHCWYRPN" gene 25529346..25535375 /locus_tag="TCM_030043" /note="dbxref CacaoGD:Thecc1EG030043" mRNA join(25529346..25529569,25530679..25531919, 25532395..25532532,25532987..25533114,25533192..25533402, 25533524..25533761,25533846..25533996,25534122..25535375) /locus_tag="TCM_030043" /product="S-locus lectin protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g32270.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030044t1" /inference="similar to AA sequence:Phytozome:Glyma13g32270.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc3023t1" CDS join(25529526..25529569,25530679..25531919, 25532395..25532532,25532987..25533114,25533192..25533402, 25533524..25533761,25533846..25533996,25534122..25534418) /locus_tag="TCM_030043" /note="paralog of Thecc1EG030044t1" /codon_start=1 /product="S-locus lectin protein kinase family protein, putative" /protein_id="EOY28500.1" /db_xref="Phytozome:Glyma13g32270.1" /db_xref="TAIR:AT4G27290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H2A3" /translation="MLRCDICFVHTFVVRICSAVDTITSKQSILDGQELVSSGGSFIL GFFSPSQSKHRYLGIWYRNISPQTIVWVGNRGRPINDSYGQLTVSADGNLILLDGAGN TIWSSKSNSARSIKEPTAKLLHSGNLVLVDGTDTNSDGYVWQSFDYPGNTLLPGMRLG WDAKTGLHRQLTSWKSADDPSPGNFTFSIDIGVLPQFVLRQGVIRKYRSGIWNGFGFN SNLRTSTGAVVPTFTFNSNEIIYMAGSADDTTTILVMGHNGFVEQYAWDKETLQWITI YEARKDRCDNYGICGPNSICNTHNLPVLCDCLPGFIPRSQVEWDAFNWAGGCIRKTQL DCRKPDGFMTLRRVKLPDVLQFWTNENMNLKECKEECLKNCKCTAYANLNVIEGGQGC LVWFGDLYDMRLFISHAGDDEKKEQDLHIRLAASDVESIADGRKKKRPTMMIVIILVV SGVLVLVSFIICFIIKERKQKDNKGTRDNLNEDLELPLFSLATVLTATDNFCCENKLG EGGFGPVYKGILAEGQEIAVKRLSETSRQGISEFKNEVMLVAKLQHRNLVKLLGVCTQ GEERMLIYEHMENKSLDQFIFDSRRSKMLDWKRRLDVIVGIARGLLYLHQDSRLTIIH RDLKTSNILLDTEMNPKISDFGMARIFEADQSRVKTKRIAGTYGYMSPEYGIDGLFSV KSDVFGFGVIVLEILSGMKNRAFQHPDHHHNLLGHAWILWKEGRPLELMDVNLGSSGF KSELLKFMQVGLLCVQRAPEDRPTMSAVVFMLSNDGLTLAEPKQPGFFVERCPSCYTK EEYCTHSAVTITLVEAR" gene 25535423..25541866 /locus_tag="TCM_030044" /note="dbxref CacaoGD:Thecc1EG030044" mRNA join(25535423..25535974,25536713..25538336, 25538552..25538680,25538770..25538924,25539198..25539408, 25539563..25540039,25540120..25540524,25541565..25541866) /locus_tag="TCM_030044" /product="S-locus lectin protein kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29784.m000368" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030040t1" /inference="similar to AA sequence:ricco:29842.m003712" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:PASA:2:TSA:puevd3b029060t1a2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1483t5" mRNA join(25535423..25535974,25536713..25538336, 25538552..25538680,25538770..25538924,25539198..25539408, 25539563..25539800,25539889..25540039,25540120..25540524, 25541565..25541866) /locus_tag="TCM_030044" /product="S-locus lectin protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29784.m000368" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030040t1" /inference="similar to AA sequence:ricco:29842.m003712" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1483t5" mobile_element complement(25536344..25536434) /note="source:scaffold_1_CACTA_0005 6600 6689" /mobile_element_type="transposon:TIR/CACTA" CDS join(25537067..25538336,25538552..25538680, 25538770..25538924,25539198..25539408,25539563..25539800, 25539889..25540039,25540120..25540422) /locus_tag="TCM_030044" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003712; paralog of Thecc1EG030040t1" /codon_start=1 /product="S-locus lectin protein kinase family protein isoform 1" /protein_id="EOY28501.1" /db_xref="TAIR:AT4G27290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H2A5" /translation="MGKLKGSLLFLSVVSSLLERLIAVDTITPARSINDSQTIVSPGQ KFELGFFKIGNPSGQYLGIWYKNLPIRTFVWVGNRESPLINSSGLLKLGDDGRLAIVN ESGSVIWSSNSSRTAKMPVAQLLDTGNFVVKDAGDDNDESYIWQSFDYPSDTLLPGMK LGWNTKTGLNRYLTSWNSSDDPSPGEYTYSVDPRGLPQLVLRKGPVELFRSGPWYGTQ FSGVPVLQVNPVFTPIFVSNADEVYYTYNITANIPSRFMLSQSGSVQHLSWNDRHSNW YVLFTVQEDRCDNYGLCGSYGICNINKSPNCDCLKGFEPKSSKDWEVLDWAGGCVRKD PRICHEGEGFVKFTGLKLPDASQFRVNVRMTIEDCEAECLKNCSCAAYAKFDIRGTGN GCVTWYGDLIDIREVPGYGQDLSIRMSASALALHADTSNKRKNVIISTSISVASAMII LALIGWFVIWKRKIVRANQPENQMTISKVESQEDLELPLFEFATIQAATDNFSAANKI GEGGFGPVYKGELQSGQEVAVKRLAENSGQGLQEFKNEVILISKLQHRNLVKLLGCCI EREERTLIYEYMPNRSLDSLIFDETRRPSLDWRRRHDIIVGIARGLLYLHRDSRLRII HRDLKASNVLLDNEMNPKISDFGLARMFGGDQTEANTKRVVGTYGYMPPEYAIDGNFS LKSDVFSFGVILLEMVSGKKNRGFFHPDHKLNLLGHAWKLWNEEKALELMDELMEQEY PEHEAIRCIQVGLLCVQQRPEDRPVMQTVLLMLDSESMSLPQPGRPGFYAERSLSETE SSSLGKLISNEMTVTLLEGR" CDS join(25537067..25538336,25538552..25538680, 25538770..25538924,25539198..25539408,25539563..25539801) /locus_tag="TCM_030044" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003712; paralog of Thecc1EG030040t1" /codon_start=1 /product="S-locus lectin protein kinase family protein isoform 2" /protein_id="EOY28502.1" /db_xref="TAIR:AT4G27290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I053" /translation="MGKLKGSLLFLSVVSSLLERLIAVDTITPARSINDSQTIVSPGQ KFELGFFKIGNPSGQYLGIWYKNLPIRTFVWVGNRESPLINSSGLLKLGDDGRLAIVN ESGSVIWSSNSSRTAKMPVAQLLDTGNFVVKDAGDDNDESYIWQSFDYPSDTLLPGMK LGWNTKTGLNRYLTSWNSSDDPSPGEYTYSVDPRGLPQLVLRKGPVELFRSGPWYGTQ FSGVPVLQVNPVFTPIFVSNADEVYYTYNITANIPSRFMLSQSGSVQHLSWNDRHSNW YVLFTVQEDRCDNYGLCGSYGICNINKSPNCDCLKGFEPKSSKDWEVLDWAGGCVRKD PRICHEGEGFVKFTGLKLPDASQFRVNVRMTIEDCEAECLKNCSCAAYAKFDIRGTGN GCVTWYGDLIDIREVPGYGQDLSIRMSASALALHADTSNKRKNVIISTSISVASAMII LALIGWFVIWKRKIVRANQPENQMTISKVESQEDLELPLFEFATIQAATDNFSAANKI GEGGFGPVYKGELQSGQEVAVKRLAENSGQGLQEFKNEVILISKLQHRNLVKLLGCCI EREERTLIYEYMPNRSLDSLIFDETRRPSLDWRRRHDIIVGIARGLLYLHRDSRLRII HRDLKASNVLLDNEMNPKISDFGLARMFGGDQTEANTKRVVGT" mobile_element complement(25541455..25541506) /note="source:CACAO_M_E34353_F19_scaffold_4 88 140" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25541643..25548342 /locus_tag="TCM_030045" /note="dbxref CacaoGD:Thecc1EG030045" mRNA join(25541643..25541653,25543765..25545514, 25545871..25545996,25546142..25546344,25546420..25546630, 25546713..25546950,25547043..25547193,25547284..25548342) /locus_tag="TCM_030045" /product="S-locus lectin protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29784.m000368" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030035t1" /inference="similar to AA sequence:ricco:29842.m003707" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc797t5_C2" mobile_element complement(25541794..25542361) /note="source:CACAO_M_E44210_F112_scaffold_5 2777 3367" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(25544230..25545514,25545871..25545996, 25546142..25546344,25546420..25546630,25546713..25546950, 25547043..25547193,25547284..25547586) /locus_tag="TCM_030045" /note="dbxref ricco:29842.m003707; paralog of Thecc1EG030035t1" /codon_start=1 /product="S-locus lectin protein kinase family protein, putative" /protein_id="EOY28503.1" /db_xref="TAIR:AT1G11410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1V9" /translation="MNPVDWLVRILLLFFLSHLSFSADTITIDHFIKDGKVIVSGGKI FALGFFSPGSSRNRYVGIWYNQVSEKTVVWVANREKPLDDSSGILSIDSRGNLALFQR NQAHPVWSTNVSITGTGNSIAQLLDSGNLVLLQNDSRRAVLWQSFDYPTNTMLPFMKL GLSFKTGLNRFLTSWKSPDDPGIGDFSYRIDPSGFPQLSLYKGSALWWRSGTWTGQRW SGVPEMTRNYIFNVSFVNTDDEVSITYGVTNASIITRMITNETGIQERFTWSNQARKW IGFWSAPKEQCDLYGHCGPNGCCNPDNSDRFECTCFPGFEPKSPQEWYIRNGAGGCVR KGNVSATCRNGEGFVKVARVKVPNTSAARVDMSLGLKRCEEKCLRDCSCVAYAGAYYE SKGGIGCLTWHGDLVDARTYTAAGQDLYIRVDADELARYTKKGPLQKKGVLAVIIVSA AVVFLIVVAFLSWLVRRKRRGNRRQSRNPFSFAGSSSLIEDSVDGKDIEESRRNADLP FFDLSTIAAATNNFSSDNKLGQGGFGTVYKGLLFNRKEIAVKRLSKHSGQGVEEFKNE IVLIAKLQHRNLVRILGCCIEGEEKLLIYEYLPNKSLDSIIFDETKRSSLDWKKRIEI ICGVARGILYLHQDSRLRIIHRDLKASNVLLDAAMNPKISDFGMARIFGGDQIEGNTN RVVGTYGYMSPEYAMEGHFSMKSDVYSFGVLLLEIITGRKNSDDYPDSPSSNLVGHVW ELWKHDRAMEVVDSTLGDSCPANEFLKCIQIGLLCVQEHATDRPTMSTVVFMLGNETV LAPPKQPAFIMKKARKGDETWSSEGTSSVNDVTVTMVQAR" mobile_element 25549731..25549819 /note="source:scaffold_3_CACTA_0396 887 980" /mobile_element_type="transposon:TIR/CACTA" gene 25552154..25554360 /locus_tag="TCM_030046" /note="dbxref CacaoGD:Thecc1EG030046" mRNA 25552154..25554360 /locus_tag="TCM_030046" /product="Plant U-box 8" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006112001" /inference="similar to AA sequence:Phytozome:GSVIVT01006112001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09021t00001" CDS 25552402..25553502 /locus_tag="TCM_030046" /codon_start=1 /product="Plant U-box 8" /protein_id="EOY28504.1" /db_xref="Phytozome:GSVIVT01006112001" /db_xref="TAIR:AT4G21350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HDF0" /translation="MATQLPDDFKCPISLEIMSDPVILASGHTFDRTSIQRWLDSGHR TCPITKLPLPEHPFLIPNHALRSLISNYTLVTPSNSQPCPQPQTLCSALTSPSSSVET KLESLTHLAKLTKRDSALRRKLTESGAVPAVLKCVDSGDPSLQEKALSLLLNLSLDDD NKVGLVAEGAINRVVKVLRVGLPDCRAIAATIVTSLAVVEVNKATIGAYPDAIPALVR LLIAGKGREKKEAATALYAICSFADNRRRAIDCGAVPILMGLLDSGLERAIEVLGLLV KCKEGREEMMKVNGCVKVLVEVLRNGSSRGVQYGLFTLNCLCNYNESFCFEARNEGVL EICMGLVEEENEKIRRYTSSLLQTLRGNHAIG" gene 25554643..25557383 /locus_tag="TCM_030047" /note="dbxref CacaoGD:Thecc1EG030047" mRNA join(25554643..25554760,25555451..25557383) /locus_tag="TCM_030047" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.33 coverage" CDS 25556017..25556448 /locus_tag="TCM_030047" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28505.1" /translation="MENMVWELCRSMRVKVIGERKASNRSEMSAEGSKACAFTFCIHI LCFCCCIWRSNKQYFFSFFFLFLLLEGDVAWVNKHQIIQEREEQIRVKKKKKEKIPRS FQLDGRSIYSLLPPLEAAPEEQTRAQILLALSFSDPDKSKF" gene 25558118..25559530 /locus_tag="TCM_030048" /note="dbxref CacaoGD:Thecc1EG030048" mRNA join(25558118..25558353,25559250..25559530) /locus_tag="TCM_030048" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage" CDS join(25558216..25558353,25559250..25559330) /locus_tag="TCM_030048" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28506.1" /translation="MTWYELPILDRLKVGYDFPFSTAYNINYKSILPSEKPQKCRFGK EKMSWLIRGKRYKVATAKGDGERGWCSL" gene 25560083..25563379 /locus_tag="TCM_030049" /note="dbxref CacaoGD:Thecc1EG030049" mRNA join(25560083..25560204,25561638..25561731, 25561948..25562210,25562318..25562545,25562636..25563379) /locus_tag="TCM_030049" /product="Quinone reductase family protein" /inference="alignment:exonerate- protein:2:ricco:29842.m003705" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031171t1" /inference="similar to AA sequence:ricco:29842.m003705" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07718t00001" CDS join(25560182..25560204,25561638..25561731, 25561948..25562210,25562318..25562545,25562636..25562657) /locus_tag="TCM_030049" /note="dbxref ricco:29842.m003705; paralog of Thecc1EG031171t1" /codon_start=1 /product="Quinone reductase family protein" /protein_id="EOY28507.1" /db_xref="TAIR:AT4G27270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BPW8" /translation="MATKVYIVYYSMYGHVEKLAQEIKKGAASVEGVEVKLWQVPETL PEEVLGKMGAPPKTDAPCITPNELAEADGVLFGFPTRFGMMAAQFKAFMDATGGLWRT QDLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMFEMENLKG GSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGIAKKLKGTASLVSIE" gene complement(25566396..25569310) /locus_tag="TCM_030051" /note="dbxref CacaoGD:Thecc1EG030051" mRNA complement(join(25566396..25567131,25567259..25567315, 25567454..25567519,25567639..25567704,25567812..25567913, 25568049..25568664,25568957..25569310)) /locus_tag="TCM_030051" /product="Transcription factor, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005301001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031172t1" /inference="similar to AA sequence:Phytozome:GSVIVT01005301001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09571t00001" CDS complement(join(25566982..25567131,25567259..25567315, 25567454..25567519,25567639..25567704,25567812..25567913, 25568049..25568664,25568957..25569300)) /locus_tag="TCM_030051" /note="paralog of Thecc1EG031172t1" /codon_start=1 /product="Transcription factor, putative" /protein_id="EOY28508.1" /db_xref="Phytozome:GSVIVT01005301001" /db_xref="TAIR:AT1G61660.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXX2" /translation="MAEEFHAGICGGTWWNSSKSMFSGCSSPCSAGIADMGSFGSWGA DMVDTKAARSCDQESNNSVSDSSIVFQGAHQKPQQADSDSGGSSILIDSTLQMMGFGL SSSTTSDWNQSLLRSNGRTESYNSILQEDINSRLSCRQETGMDSSQIQKNWSPKTYAS PGEDSSITTFKPINQDFSVTKSGDSTPACQGLSAGFPMGSASYGYPSTVLLQSLFEPD PQPQQSLLNNRSINYMSAPATYGANANELSSPPWPKLAPCLRPSLPKQQQPSSLHFSN NTPFWNASSTGLSDVKASFLPSPQSQFLAQTFDEKPNCPSLTIKTNTEEVRDSMKKGS SEPPFKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKF LHDQVNVLSTPYMKQAAAASIQQQQSPDKLKEPEGPKQDLRSRGLCLVPISSTFPVAN ETTADFWTPTFGGTFR" mobile_element 25567636..25567707 /note="source:scaffold_2_CACTA_0244 10480 10551" /mobile_element_type="transposon:TIR/CACTA" gene 25578600..25584130 /locus_tag="TCM_030052" /note="dbxref CacaoGD:Thecc1EG030052" mRNA join(25578600..25578908,25579011..25579122, 25579386..25579519,25579760..25579935,25580964..25581087, 25581474..25581674,25581813..25581893,25582877..25583014, 25583266..25584130) /locus_tag="TCM_030052" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29647.m002047.2" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1135t4" CDS join(25578861..25578908,25579011..25579122, 25579386..25579519,25579760..25579935,25580964..25581087, 25581474..25581674,25581813..25581893,25582877..25583014, 25583266..25583559) /locus_tag="TCM_030052" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28509.1" /translation="MDDDVPLASLFSTRHLERIRELGSNNGCPAVQAKPTGPEAKRTR ASERDESLIGGTRCNTKEEFLDEANVGDVVVALVDLAGNLSYVLFYLVLFVFFSLDFV ECYDDDLVSLVFPTLCSAPPRAYCQAALLMDLQLVTSLISVAKTLAEQRYTTQRQIGS VICMLLDENPLVELTEEDATNLIRLLSASVRKAVGEKTNFKVVVQLIIDAFFKHGEKD ALRSCPKAIQFCCTESPGELQDFSHNKLKDLEDELTKKLKSAMKEVMLSGPLLNESLY EDIITVLHSFRNLDDEEFLAPKVISHFVMHGSSMVEIVNNLITVLKKTDDDISSIFLE VLKRRSTNILFESGLPAFYGTLQIDNESLRCKSFQGCEDLAVQLAGTFEGAAHNKHRS DFLKIVKEGIEYAFEDASKQLSFLEAAVCHFVSKLPISDVLDM" gene 25580263..25580896 /locus_tag="TCM_030053" /note="dbxref CacaoGD:Thecc1EG030053" mRNA join(25580263..25580475,25580563..25580681, 25580774..25580896) /locus_tag="TCM_030053" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004506t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc3802t1" CDS join(25580310..25580475,25580563..25580627) /locus_tag="TCM_030053" /note="paralog of Thecc1EG004506t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28510.1" /translation="MCHISRHWLLPDDNLHPLYDDMLVDYKPEIRHAQGELLYDHLIA QKFNSFQSGPKGNDSQIHLGRMRQILRKHSTN" gene 25585016..25586531 /locus_tag="TCM_030054" /note="dbxref CacaoGD:Thecc1EG030054" mRNA 25585016..25586531 /locus_tag="TCM_030054" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s03530.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s03530.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7972t1" CDS 25585130..25586167 /locus_tag="TCM_030054" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28511.1" /db_xref="Phytozome:POPTR_0011s03530.1" /translation="MANYSSSYHDAIFGEYYQTPYGGNSDFFPSQSLASHSSYAYNDC ASFEYDPAPCYGAYDPDIGQSIVSYSSYICSDPNYVEYGLDPYGGDYSTVKTRFIVSY SVSEFNEPAFEEYDPTPYGGGYDPDATYGKPLPPSEGICYPLSSVDSNDLSLNNFSYG SIKSPYGKDGVDEPVAKPSNGSKTATAKDQEQQSQGSSGDHNVDSKEKPVDSYQGEDS KENYPDGYSSGSGHGNEYEKRVPQIPPGYGLEAMDLCESLFGYWPCWARAKRENDYRN CQGVCSKVSNDNCLWEGSADYLFGNSYPYGERWGNGGSYEHPIFNYERHYQEQHLCRQ VDYHEEYSWLN" gene 25587648..25588751 /locus_tag="TCM_030055" /note="dbxref CacaoGD:Thecc1EG030055" mRNA join(25587648..25588139,25588414..25588688) /locus_tag="TCM_030055" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003701" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031177t1" /inference="similar to AA sequence:Phytozome:GSVIVT01005299001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15750t00001" mRNA join(25587662..25588139,25588417..25588751) /locus_tag="TCM_030055" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29842.m003701" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031177t1" /inference="similar to AA sequence:Phytozome:GSVIVT01005299001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7928t1; inference alignment:Newbler:10:TSA:cgbaP2_g15750t00001" CDS join(25587710..25588139,25588414..25588469) /locus_tag="TCM_030055" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG031177t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY28512.1" /db_xref="Phytozome:GSVIVT01005299001" /db_xref="TAIR:AT1G61667.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SSM4" /translation="MSLSLKTLTPTSFFILFLLFPLTVTSSIQDLLQGQGLPAGLFPD NVKSYKLDPDGRLEVHLETPCMAKFDGRVHFDRVVRANLSYGGLVGLEGLSQEELFLW LPVKGIIVNDPSSGLILFDIGVAHKQLSLSLFEDPPVCKPQEVLVEKVGRKKKEFQDQ R" CDS join(25587710..25588139,25588417..25588469) /locus_tag="TCM_030055" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG031177t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY28513.1" /db_xref="Phytozome:GSVIVT01005299001" /db_xref="TAIR:AT1G61667.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SSM4" /translation="MSLSLKTLTPTSFFILFLLFPLTVTSSIQDLLQGQGLPAGLFPD NVKSYKLDPDGRLEVHLETPCMAKFDGRVHFDRVVRANLSYGGLVGLEGLSQEELFLW LPVKGIIVNDPSSGLILFDIGVAHKQLSLSLFEDPPVCKPQVLVEKVGRKKKEFQDQR " gene complement(25588468..25591535) /locus_tag="TCM_030056" /note="dbxref CacaoGD:Thecc1EG030056" mRNA complement(join(25588468..25589522,25590715..25590891, 25591001..25591174,25591325..25591535)) /locus_tag="TCM_030056" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29842.m003700" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400037647" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS complement(join(25589190..25589522,25590715..25590891, 25591001..25591174,25591325..25591495)) /locus_tag="TCM_030056" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /protein_id="EOY28514.1" /db_xref="Phytozome:PGSC0003DMP400037647" /db_xref="TAIR:AT4G21330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BG38" /translation="MEFGGSGMSDRGPRRGRMGRRRLEDDEDDQEFISKNLHAERRRR QKLSDRLLTLRSSMNKATIIEDAITYIQELQKSSQVLTEQLLEMEGSSEEGGKPMADE IDAAEDMKNYGIKEDVNVTNIDGNKLLIRIILEKRRGCFTKLIEAMNYLGFELCETNV TTCKGAMLFSSCVQELKVLPCFLSFMARIHHLCIVLAAGFFSFIVMFQATDGSRLTPP EAGIDADPPDVKMIAEGPVIRAIGKHSSLDKSAAGGDVILGGFVMAVVVAVVCYLRIT RKSQEAYS" gene 25591843..25593897 /locus_tag="TCM_030057" /note="dbxref CacaoGD:Thecc1EG030057" mRNA join(25591843..25591918,25592355..25593897) /locus_tag="TCM_030057" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s02930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030058t1" /inference="similar to AA sequence:frave:gene30668" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07556t00001" CDS 25592502..25593626 /locus_tag="TCM_030057" /note="dbxref frave:gene30668; paralog of Thecc1EG030058t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /protein_id="EOY28515.1" /db_xref="TAIR:AT1G55890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYT5" /translation="MSSLTRLLRCTFSTASTAQPDSVRKLAVDLYKERNLKRVVEKFK KSCENGRFRSQTGIYEGTVRRLASAGRFRWIEEILEEQKKYKDIAKEGFAARLIHLYG KSGMFEQAYKVFDEMPNRGLLSFNALIGACVNAKKFDKVNGFFKELPEKLSIEPDLVS YNTVIKAFCEMGSLDSASLILDEMEKKGVKSDLITFNTLLNGLFKNGKFVDGEKIWGK MLENNVEPDIRSYNAKLLGLVTEKRMEEAVKFVEEMRSKGVKPDVFTFNHMIRGYVNE VKLEEAKGWYGQMGKSDCAPDKLTFTMLVPFLCEKGDLGFAMEVCKEIFLRKRLVGDA LLQLVVDELVKASKIEDAKELVKLGKANNFCRYKLNMPTE" gene 25594498..25596391 /locus_tag="TCM_030058" /note="dbxref CacaoGD:Thecc1EG030058" mRNA 25594498..25596391 /locus_tag="TCM_030058" /product="Pentatricopeptide repeat-containing protein, putative" /inference="alignment:exonerate- protein:2:ricco:29842.m003697" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030057t1" /inference="similar to AA sequence:ricco:29842.m003697" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03871t00001" mobile_element 25594562..25594648 /note="source:scaffold_3_CACTA_0377 2101 2190" /mobile_element_type="transposon:TIR/CACTA" CDS 25594724..25595875 /locus_tag="TCM_030058" /note="dbxref ricco:29842.m003697; paralog of Thecc1EG030057t1" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative" /protein_id="EOY28516.1" /db_xref="TAIR:AT3G13150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXW5" /translation="MSKAMEASSVRRLVGLFTTSANRTTSTALTSTKPSSKATMKARK LQGLVNKFKQSSESDQFRYKSQRSYDRTVRRLASAKQFSLIDDILQHQKKYQDIAQEG FVIRLMTLYGKAGMFEHAQKLFDEMPELKCDRTVKSFNALLSACIYSEKFGNVEQLLK LPEKLGIEPDLVSYNTVIKAFCEMGSLDSALSVVDTLEKKGLEPDVITFNTLLDGLFS KGRIADGEKIWGLMEEKNVVPNVRTYNSKLRGLVYEKEIVKAVELWEEMENKGIKPDV YSYNAMIKGYCNAGNIEQVKKWYTELKKSGISPDRVTYVTLVSFLCKKSEFEMAVELC KESLDRRVTAGAAMFQTVIGGLVKESRIDEAIQLVELGKSSLHYKLKLH" mobile_element 25598412..25599312 /note="source:INTACT52F_F339_scaffold_1-int 1 874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25599768..25602000) /note="source:INTACT60_F127_scaffold_9-int 12514 14748" /mobile_element_type="retrotransposon:LTR/Gypsy" assembly_gap 25606132..25616131 /estimated_length=10000 /gap_type="between scaffolds" mobile_element 25616143..25618877 /note="source:INTACT52F_F339_scaffold_1-int 8092 11050" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25616470..25667743) /locus_tag="TCM_030060" /note="dbxref CacaoGD:Thecc1EG030060" mRNA complement(join(25616470..25616655,25618020..25618139, 25662306..25662892,25662974..25663222,25663505..25663643, 25663743..25663961,25664060..25664435,25664531..25664795, 25664876..25665173,25667686..25667743)) /locus_tag="TCM_030060" /product="3S-linalool/(E)-nerolidol /(E,E)-geranyl linalool synthase, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006591001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030061t1" /inference="similar to AA sequence:Phytozome:GSVIVT01005268001" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1523t5_C2" mobile_element 25619127..25620038 /note="source:CACAO_on_E459_scaffold_2 1642 2550" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(25621174..25621445) /note="source:INTACT726_F314_scaffold_5-int 2245 2500" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25623923..25631688) /locus_tag="TCM_030061" /note="dbxref CacaoGD:Thecc1EG030061" mRNA complement(join(25623923..25624778,25624860..25625108, 25625401..25625539,25625641..25625859,25630642..25631017, 25631113..25631377,25631458..25631688)) /locus_tag="TCM_030061" /product="3S-linalool/(E)-nerolidol /(E,E)-geranyl linalool synthase, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g30700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030060t1" /inference="similar to AA sequence:Phytozome:GSVIVT01005268001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g7948t1" CDS complement(join(25624473..25624778,25624860..25625108, 25625401..25625539,25625641..25625859,25630642..25631017, 25631113..25631377,25631458..25631658)) /locus_tag="TCM_030061" /note="paralog of Thecc1EG030060t1" /codon_start=1 /product="3S-linalool/(E)-nerolidol /(E,E)-geranyl linalool synthase, putative" /protein_id="EOY28518.1" /db_xref="Phytozome:GSVIVT01005268001" /db_xref="TAIR:AT1G61680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GAH6" /translation="MALFSNVSFSSPIAPIASNKASLLHNFNLVGPASLPMIPRCSIA RDHRIVSTPLEHFGQRSGHPTITDEFRIEHANKLEAFKRVFREVGEDPLQALAMVDAI QRLGIDHHFQYEIDEVLQKQYMLSCTNGVHDYDLQEVSLRFRLLRQEGYFVPAGVFDR FKDREGGFRNELRRDIKGLMELYEASQLAVEGEDILDGAREFSSQALKTWQSRELDQF SGRVIKTTLDQPYHKRLSRFTARNLLTNYQGTNGWINVLQELAKMDFNIVQSLHQTEA IRISNWWKGLGLTKELELARDQPLKWYIWSMASLTDPSLSEQRIDLTKPISLIYIIDD IFDIYGTLDELTLFTQAVDRWDYAATDRLPDYMKICFKALDDITDEISHKVYKKHGWN PVNSLRKAWATLCRAFLVEARWFASGKLPKAKEYLENGITSSGVHIILVHSFFLLGQG LNNKNVELIDNNPSMISSTATILRLWDDLGSAKDEKQDGNDGSYVECYMEEHQGVEYE SARKHVTNMISNAWKRLNHECLSENPFSLPFARASLNIARMVPLMYSYDENQCLPSLE EYMKSLLYESVPMKNTSA" mobile_element complement(25633469..25633906) /note="source:scaffold_1_CACTA_0008 951 1387" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25633564..25633946) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17247 17579" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(25634133..25635122) /locus_tag="TCM_030063" /note="dbxref CacaoGD:Thecc1EG030063" mRNA complement(join(25634133..25634511,25634627..25634875, 25634952..25635122)) /locus_tag="TCM_030063" /product="3S-linalool/(E)-nerolidol /(E,E)-geranyl linalool synthase, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030061t1" /inference="similar to AA sequence:Phytozome:GSVIVT01005268001" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(25634209..25634511,25634627..25634875, 25634952..25635020)) /locus_tag="TCM_030063" /note="paralog of Thecc1EG030061t1" /codon_start=1 /product="3S-linalool/(E)-nerolidol /(E,E)-geranyl linalool synthase, putative" /protein_id="EOY28519.1" /db_xref="Phytozome:GSVIVT01005268001" /db_xref="TAIR:AT1G61680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GAH6" /translation="MKSVTRFIKNMDGTLLTPLRKQCWARFCNAFLLEAKWLATGHLP KAEEYLENAIVTTGAHVALAHAFFLVDQGITKREGDLLAKIPGIISSAANIVCQWDDL GSAKDENQEGRDGSYVNLYIKEHLGISVQGAREHVMQIILDAWKRLNQESCPPNPFSP CFTKVCLNGARMAPLMYNYDEHQNLPALEEHVQVNAARKLSYLGYL" mobile_element 25635095..25635944 /note="source:CACAO_M_E4063_F12_scaffold_2 4905 5762" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25635871..25636345) /note="source:scaffold_2_CACTA_0248 10192 10632" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25635957..25637338 /note="source:INTACT257_F186_scaffold_6-int 910 2313" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25637646..25638076) /note="source:CACAO_M_S_E5474_F222_scaffold_1 2045 2463" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25638507..25639764) /note="source:INTACT117_F146_scaffold_2-int 1 1256" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25639431..25647118) /locus_tag="TCM_030064" /note="dbxref CacaoGD:Thecc1EG030064" mRNA complement(join(25639431..25639772,25641773..25642474, 25642556..25642804,25644250..25644391,25647085..25647118)) /locus_tag="TCM_030064" /product="3S-linalool/(E)-nerolidol /(E,E)-geranyl linalool synthase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005271001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030061t1" /inference="similar to AA sequence:Phytozome:GSVIVT01005268001" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.24 coverage" mobile_element 25640124..25640413 /note="source:CACAO_Again_on_E5_scaffold_1 1 316" /mobile_element_type="transposon:TIR/hAT" CDS complement(join(25642166..25642474,25642556..25642804, 25644250..25644273)) /locus_tag="TCM_030064" /note="paralog of Thecc1EG030061t1" /codon_start=1 /product="3S-linalool/(E)-nerolidol /(E,E)-geranyl linalool synthase" /protein_id="EOY28520.1" /db_xref="Phytozome:GSVIVT01005268001" /db_xref="TAIR:AT1G61680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GAH6" /translation="MGRDGEGMWATLCRAVLVEARWFASGKLQKAKEYLENGITTSGV HMILVHIFFLLGQGLNNKNVELIDNNPGMISSTATILRLWDDLGSAKDENQDGNDGSY VECYMKEHQGVEVEVVRKHVTHMISNAWKRLNHECLSRNPFSLPFARASQNIARMVPL MYSYDENQCLPSLEEYMRSLLYESVPVKSTSSA" mobile_element 25644018..25644095 /note="source:scaffold_5_CACTA_0614 1828 1912" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25644096..25644372 /note="source:CACAO_Mutator_E39_scaffold_1 10746 11030" /mobile_element_type="transposon:TIR/Mutator" mobile_element 25657513..25658275 /note="source:scaffold_5_CACTA_0586 15358 16106" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25658122..25658313 /note="source:INTACT1232F_F375_scaffold_6-int 9195 9381" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25658276..25658291) /note="source:INTACT89_F140_scaffold_9-int 444 465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25659171..25659390 /note="source:INTACT1330F_F382_scaffold_8-int 1852 2073" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25661092..25661164 /note="source:scaffold_6_CACTA_0712 1382 1457" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25661094..25661195) /note="source:CACAO_M_S_E18487_F233_scaffold_3 1180 1265" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25661932..25662283) /note="source:CACAO_Mutator_E1430_scaffold_6 1096 1474" /mobile_element_type="transposon:TIR/Mutator" CDS complement(join(25662590..25662892,25662974..25663222, 25663505..25663643,25663743..25663961,25664060..25664435, 25664531..25664795,25664876..25665076)) /locus_tag="TCM_030060" /note="paralog of Thecc1EG030061t1" /codon_start=1 /product="3S-linalool/(E)-nerolidol /(E,E)-geranyl linalool synthase, putative" /protein_id="EOY28517.1" /db_xref="Phytozome:GSVIVT01005268001" /db_xref="TAIR:AT1G61680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GAH6" /translation="MALFSNVSFSSPIAPIASNKASLLHNSNLVGPASLPMNPRCSIA RDHRIVSTPPEHFGHRSGHPTITDEFRIEHANKLETFKRVFREVGEDPSQGLVMIDAI QRLGIDHHFQYEIDEVLQKQYMLSCTNGVHDYDLHEVALRFRLLRQEGYFVPAGVFDR FKDREGSFRNELRRDIKGLMELYEASQLAVEGEDILDRAKEFSSQALKTWQSRELDRF SERVIKTTLDQPYHKSLSRFTARNLLTNVQGTNGWINVLQELAKMDFNIVQSLHQEEV VRISNWWKDLGLAKELEFARDQPLKWYIWSMASLTNPNLSEQRIDLTKPISLIYIIDD IFDVYGTLDELTLFTQAVVRWDYGSTDRLPDYMKICFKALDDITDEISHKVYKEHGWN PVNSLRKAWATLCRAFLVEARWFASGKLPKAKEYLENGITSSGVHIVLIHIFFLLGQG LNNQHVELIDNNPGMISSTATILRLWDDLGSAKDENQDGNDGSYVDCYMKEHQGVEVE SVRKHVTHMISNAWKRLNHKCLSQNSFSLPFARASLNIARMVPLMYSYNENQCLPSLE EYMECLLFESVPMKTLL" mobile_element complement(25663906..25663945) /note="source:INTACT88_F12_scaffold_4-int 7205 7244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25666532..25666990) /note="source:scaffold_1_CACTA_0008 951 1371" /mobile_element_type="transposon:TIR/CACTA" gene 25669643..25672392 /locus_tag="TCM_030066" /note="dbxref CacaoGD:Thecc1EG030066" mRNA join(25669643..25669812,25669944..25670281, 25670513..25670631,25671022..25671160,25671625..25672392) /locus_tag="TCM_030066" /product="R-limonene synthase 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s03440.1" /inference="similar to AA sequence:ricco:29771.m000073" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc5651t1" CDS join(25669680..25669812,25669944..25670281, 25670513..25670631,25671022..25671160,25671625..25671918) /locus_tag="TCM_030066" /note="dbxref ricco:29771.m000073" /codon_start=1 /product="R-limonene synthase 1, putative" /protein_id="EOY28521.1" /translation="MRLTTYSGTSTRTTETIRGKIKDNLHATALEFRLLRENGYHSSP DVFGSFRDETRNFRLPLKDDIKAMPSLYEASYYCFEGESIMEAAWNFTSEHLRYDNGD VDPNLAIQVRHALELPIHWRMPRLEARWFILYERRADLNPRCIAACNVGLQRYVQFGS CRKILTKAIALITVIDDTYDVYGTLDELGLFIDAVERWDTQAMKQLPNYMKICFLALY NSVNEMAYDILKEHGYNVVLNLKKADKLKRGDVAKSIQCYMHENDVSEEAAREHMRNL MREAWKKVNVHRAAVYPLSQNVTGIILNLVRTAHCIYQHGDGHGFQNHKTKDHAMSLL FDPIPL" gene complement(25672172..25678120) /locus_tag="TCM_030067" /note="dbxref CacaoGD:Thecc1EG030067" mRNA complement(join(25672172..25676193,25676502..25676670, 25677004..25677648,25678102..25678120)) /locus_tag="TCM_030067" /product="Phosphoinositide binding, putative" /inference="alignment:exonerate- protein:2:ricco:29842.m003695" /inference="similar to AA sequence:Phytozome:POPTR_0011s03480.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage" CDS complement(join(25672532..25676193,25676502..25676670, 25677004..25677117)) /locus_tag="TCM_030067" /codon_start=1 /product="Phosphoinositide binding, putative" /protein_id="EOY28522.1" /db_xref="Phytozome:POPTR_0011s03480.1" /db_xref="TAIR:AT1G61690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYT6" /translation="MLEKIGLPTKPSLRGNNWVDDASHCQGCSSQFTFINRKHHCRRC GGLFCNSCTQQRMVLRGQGDSPVRICEPCKKLEEAARFELRHGYKSRAGRGSLKPAAK DEDDILNQILGADRKESSSSGVASNKDMNPSVRRAASSSSYSNVQAGVSHDGGGEICR SQSVDQPMQNDMASSSPEELRQQALDEKRKYKILKGEGKSEEALRAFKRGKELERQAE SLEIYIRKNRKKGLPSGNMSEIQNKDAPKESGRKSKVPHQVGRDKDDLAAELRELGWS DMDLHDTDKKSTNMSLEGELSSLLGDIPKKTNAHGTDKTQVVAIKKKALMLKREGKLA EAKEELKRAKVLEKQLEEQEVLAGAEDSDDELSAIIHSMDDDKQDEMLIQYEDTDDLD FDHLVGTADDLGIDSNFELTDKDMEDPEIAAALKSLGWTEDSNPTEDLVAQSAPVNRE ALVSEILSLKREALSQKRAGNVAEAMAQLKKAKLLEKDLESFGCQAENLTVNKNDPTP HTSDISVKSVKLGDENVNAIKDVDVKPAPKSGLMIQKELLGLKKKALALRREGRLDEA EEELKKGKILERQLEEMENTSNMKAAQVPIGSKGKDMINEHPYVLENLTVEGGDVTDQ DMHDPTYLSILRNLGWNDNDDERSNSLLKHSKQKDSEQIIESSLTCAPPKTPAKASRR TKAEIQRELLGLKRKALSLRRQGNTDEAEEVLETAKTLEAEIAEMEAPKKVVESNWPN EKAMLPPLNSAAQEADDENVTEKDMNDPALLSVLKNLGWKDEELEHATMQEKYSKSAR ESLHSGHPSVSQPSSGISVSLPRSKGEIQRELLGLKRKALALRRNGQAEEAEELLQRA KVLEAEMAELEVPKGEIVLDSSKDSTSGNSESFTNQGRQGNLKNEMTLKEGPVAVAVG PSETVVGSSIGLGRMESDTDNPTLRNSELLFPAATGPLEDKKSSFEKSDPSGAMGLLG GKGKVETASFVSPPDQSANIVDLLTGDDLISSQILAEKLKEKSDFGSNFSSLARPNVQ LASQEDLRTKDEDTTGISRVVNGEQKPHAFDVSPVQGFVSHNSQDSLKQAVLSHKKKA LALKRDGKLAEAREELRQAKLLEKSLAEDSTPSKGGANGASTSSSTVPSDAPKEQGAS SLAPKPLSGRDRFKLQQESLSHKRQALKLRREGRMQEAEAEFEMAKSLEAQLEELAGH DSSKSSTVGAEPVDDVGVEDLLDPQLLSALKAIGLDDLSVVARGPERTEPVKPNGSKS EKVDQERIQLEERIKAEKLKAVNLKRSGKQAEALDALRRAKMLEKKLNSLSS" gene complement(25678579..25681773) /locus_tag="TCM_030068" /note="dbxref CacaoGD:Thecc1EG030068" mRNA complement(join(25678579..25679598,25679935..25681038, 25681563..25681773)) /locus_tag="TCM_030068" /product="Phototropic-responsive NPH3 family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29842.m003695" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007807t2" /inference="similar to AA sequence:Phytozome:GSVIVT01006403001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1294t1" CDS complement(join(25679152..25679598,25679935..25681038, 25681563..25681625)) /locus_tag="TCM_030068" /note="paralog of Thecc1EG007807t2" /codon_start=1 /product="Phototropic-responsive NPH3 family protein, putative" /protein_id="EOY28523.1" /db_xref="Phytozome:GSVIVT01006403001" /db_xref="TAIR:AT3G22104.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SQN4" /translation="MQVFCDLQVDINGEEVFMVDKRTLASFSGRFSKLFGNLMDDTRN LKVVFHDFPGGAEGFELVARFCYNEGRTEITPANVVLLNCAARFMEMESDGLRPSLLN QTKKSLDGISFWSWSELLVALKECQDLLAASSSSIILDKVLDCVIGRIASPIVASSYT SSSENSSFKCSSDTRSSYSWRNNFSQVSWWFEDLLFLNIDIIDRVIKMMIRQRFDHPT ISKFLFCYQRSRFLNASPTQKCKVTEVIIKLFSLLDRSSLSCKLLFDIFRVASSLKIS KYCKSILENLIGSQLDQATIDFLLLPSPQRKGYMYDVNLVLRLVKAFCNEGRSCCLSP VRLRKVASLVDSYLVEVAADFHLNPSKFGALVMLLPDSARESHDRLFQAIDIYLEVHG GLHEAEKMGICCALNYAKLSTDALRHLARNSKFPSRIAIQAFINQQSKLENLLEGQKH LDTFSGSLSAEESINEKENSDQMLLYAKRLNLPRKAEQLDVQLQGMQCRVTEVEKFCG IMQTQIGNIPRTRLSSLGNNARFLPKLCS" gene complement(25682457..25686950) /locus_tag="TCM_030069" /note="dbxref CacaoGD:Thecc1EG030069" mRNA complement(join(25682457..25683486,25683622..25683680, 25683859..25683895,25684996..25685177,25685273..25686290, 25686498..25686950)) /locus_tag="TCM_030069" /product="Eukaryotic translation initiation factor-related, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400037652" /inference="similar to AA sequence:frave:gene24669" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc142t4" mRNA complement(join(25682854..25683486,25683622..25683680, 25683859..25683895,25684996..25685177,25685273..25686281, 25686498..25686941)) /locus_tag="TCM_030069" /product="Eukaryotic translation initiation factor-related, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400037652" /inference="similar to AA sequence:frave:gene24669" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc142t2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc142t4" CDS complement(join(25683009..25683486,25683622..25683680, 25683859..25683895,25684996..25685177,25685273..25686281, 25686498..25686598)) /locus_tag="TCM_030069" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene24669" /codon_start=1 /product="Eukaryotic translation initiation factor-related, putative isoform 2" /protein_id="EOY28525.1" /db_xref="TAIR:AT1G11480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I216" /translation="MSKKKAFSGNTMTLKDFHGGSIPTDLPLPSAPGVPTDRSGYDRA ISWGNPIGRPDHRPRPNSSPATRHFDDKTPFLTNSVHIGRNFDEDERKPLDGVSAPRR TISDESFRVPPSGLELKPESAYAGRVSGRHGSAPVSPLSSGAGNSYSSRLPEAAHVGV SSQSAGGNHRPAASGSYPNAWAARKEVSMSVAEPPQSAWSEQSAVSKLAHASALEKVS SGRWQSKLSVQYQKDVDVSKHSEIENGLQSQGYDDKMYSRMNAMGGREYSDATLARHV ERGLNIEDEIQGNRKDLPDYERNQAPNYLEVKERKSVIYGEGIQSTRSDGKFVGSELQ PSPSVPSEASERPKLKLLPRTKPLDNLESPVIDPKQLNESVVTHAEIGNGSHGNVNTS KPGLAGSESGNQTVERPKLNLKPRSQPVEQLEGNIEKERNALFGGARPRELVLKERGI DDSNQEPGQHPDRVKHSVPRTEKVADQAAPSHGERVENPPVDQRAGRKSERNHRVENE RVDMQRRNWRNDNRRNGRETERQPQQQQQQQRQPSPESWRKPADQPKPVSPESAGVRY GKAASAVELAQAFSKSFSDQKTDDRYAGQRGLPGRNPIPFSRLMGPTPRPQINGY" CDS complement(join(25683009..25683486,25683622..25683680, 25683859..25683895,25684996..25685177,25685273..25686290, 25686498..25686598)) /locus_tag="TCM_030069" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene24669" /codon_start=1 /product="Eukaryotic translation initiation factor-related, putative isoform 1" /protein_id="EOY28524.1" /db_xref="TAIR:AT1G11480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I216" /translation="MSKKKAFSGNTMTLKDFHGGSIPTDLPLPSAPGVIVRPTDRSGY DRAISWGNPIGRPDHRPRPNSSPATRHFDDKTPFLTNSVHIGRNFDEDERKPLDGVSA PRRTISDESFRVPPSGLELKPESAYAGRVSGRHGSAPVSPLSSGAGNSYSSRLPEAAH VGVSSQSAGGNHRPAASGSYPNAWAARKEVSMSVAEPPQSAWSEQSAVSKLAHASALE KVSSGRWQSKLSVQYQKDVDVSKHSEIENGLQSQGYDDKMYSRMNAMGGREYSDATLA RHVERGLNIEDEIQGNRKDLPDYERNQAPNYLEVKERKSVIYGEGIQSTRSDGKFVGS ELQPSPSVPSEASERPKLKLLPRTKPLDNLESPVIDPKQLNESVVTHAEIGNGSHGNV NTSKPGLAGSESGNQTVERPKLNLKPRSQPVEQLEGNIEKERNALFGGARPRELVLKE RGIDDSNQEPGQHPDRVKHSVPRTEKVADQAAPSHGERVENPPVDQRAGRKSERNHRV ENERVDMQRRNWRNDNRRNGRETERQPQQQQQQQRQPSPESWRKPADQPKPVSPESAG VRYGKAASAVELAQAFSKSFSDQKTDDRYAGQRGLPGRNPIPFSRLMGPTPRPQINGY " mRNA complement(join(25683364..25683486,25683622..25683680, 25683859..25683895,25684992..25685177,25685273..25686290, 25686498..25686941)) /locus_tag="TCM_030069" /product="Eukaryotic translation initiation factor-related, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400037652" /inference="similar to AA sequence:frave:gene24669" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc121t3; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc142t4" CDS complement(join(25683658..25683680,25683859..25683895, 25684992..25685177,25685273..25686290,25686498..25686598)) /locus_tag="TCM_030069" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene24669" /codon_start=1 /product="Eukaryotic translation initiation factor-related, putative isoform 3" /protein_id="EOY28526.1" /db_xref="TAIR:AT1G11480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I216" /translation="MSKKKAFSGNTMTLKDFHGGSIPTDLPLPSAPGVIVRPTDRSGY DRAISWGNPIGRPDHRPRPNSSPATRHFDDKTPFLTNSVHIGRNFDEDERKPLDGVSA PRRTISDESFRVPPSGLELKPESAYAGRVSGRHGSAPVSPLSSGAGNSYSSRLPEAAH VGVSSQSAGGNHRPAASGSYPNAWAARKEVSMSVAEPPQSAWSEQSAVSKLAHASALE KVSSGRWQSKLSVQYQKDVDVSKHSEIENGLQSQGYDDKMYSRMNAMGGREYSDATLA RHVERGLNIEDEIQGNRKDLPDYERNQAPNYLEVKERKSVIYGEGIQSTRSDGKFVGS ELQPSPSVPSEASERPKLKLLPRTKPLDNLESPVIDPKQLNESVVTHAEIGNGSHGNV NTSKPGLAGSESGNQTVERPKLNLKPRSQPVEQLEGNIEKERSKCVVWWCSPTRTGAQ GERD" mobile_element 25686643..25686734 /note="source:CACAO_PIF_E144_scaffold_10 5996 6086" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(25687867..25694438) /locus_tag="TCM_030070" /note="dbxref CacaoGD:Thecc1EG030070" mRNA complement(join(25687867..25688500,25688593..25688841, 25688959..25689103,25689202..25689420,25689509..25689881, 25689979..25690246,25690541..25690784,25691435..25691543, 25691693..25691751,25692940..25693195,25694130..25694438)) /locus_tag="TCM_030070" /product="E,E-alpha-farnesene synthase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s03440.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0011s03440.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc2465t2" CDS complement(join(25688201..25688500,25688593..25688841, 25688959..25689103,25689202..25689420,25689509..25689881, 25689979..25690246,25690541..25690784,25691435..25691543, 25691693..25691751,25692940..25692983)) /locus_tag="TCM_030070" /codon_start=1 /product="E,E-alpha-farnesene synthase, putative" /protein_id="EOY28527.1" /db_xref="Phytozome:POPTR_0011s03440.2" /db_xref="TAIR:AT4G16740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84LB2" /translation="MSPKTTHYTPQLAVRYLHALRTDENERSRLFKPQGFRSWPFNTL STDHPNDVIVSHATIFRLRLTANKKSRSSLAIPFCKLILSTQKPSVFIQTHKVIAMDD SVNQLLAEHQVVNYQLKSEAFDVIKQRRSANYKPNIWKYDFLQSLRSKYDGDEYKRRA EKLREKGKDLFVEAVEELAKLELIDMIRKLGLADLFAEEMQKTLQAVASSKKRKNSEE EEDLYITALRFRILRLHDYEVSQDVFNSFLDDKGKFSKSKSTEIKGLLELFEASYLAF EGESILDDAKTFATETLRNIYSTLDGNLAKEVAHALELSTHWRVQWFDVKWRITMYEN NKNTDETLLELAKLNFNTVQATLQKDLSDISRWWKNLALMEHLDFTRDRLAESFLCAV GLAYEPRYSCFRKRLTKITTMILIIDDVYDVYGSLEELEQFTKAVDSWDTSKIQQLPE SMKICFQALYDITNEIAYDIQEHNHPDVQALLHLRKAWAGFCKALFVESKWYNEGYFP SLQEYLSNALISSGGTVISVHSMLSVEHNIADDMVNLLGKNHDLVHNVSIIIRLCNDL GTSAAEKERGDAPSSILCYMREVDVSEEEGQEHIKDTITGAWKKINSQCLSSPSPLQQ SFVKVTANVARMVHCLYQFGDGFGIQDRETRRHILSLLIEPFKLD" mobile_element complement(25692205..25692280) /note="source:CACAO_on_E172_scaffold_5 370 454" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 25694294..25695408 /note="source:INTACT639F_F363_scaffold_5-int 7454 8548" /mobile_element_type="retrotransposon:LTR/Copia" gene 25694533..25701847 /locus_tag="TCM_030071" /note="dbxref CacaoGD:Thecc1EG030071" mRNA join(25694533..25694659,25696125..25696663, 25696836..25697201,25697373..25697526,25700351..25700411, 25700742..25700827,25700926..25700997,25701088..25701288, 25701406..25701847) /locus_tag="TCM_030071" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006397001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031130t2" /inference="similar to AA sequence:Phytozome:GSVIVT01014571001" /note="quality class is strong, express is medium, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc76t4" CDS join(25696891..25697201,25697373..25697526, 25700351..25700411,25700742..25700827,25700926..25700997, 25701088..25701288,25701406..25701711) /locus_tag="TCM_030071" /note="paralog of Thecc1EG031130t2" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY28528.1" /db_xref="Phytozome:GSVIVT01014571001" /db_xref="TAIR:AT5G54590.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FIU5" /translation="MRNFQRGLAIGISVGVVIGVVLAMSVICCIRYRRKRSDLCHDED KVSPRAETIPIRAHGADSSTMLSDSHRGQESPRTSEWSNMPQWLEGLKRKSVASACGI PKELERATYDFTTNIGHGAFGPVFKAQMKTGQTAAVKVLANDSRQGAMEFLSEKKENI CYVYMSNGSLASHLYNEKHEPLSWDLRVRIALDVARGLEYLHHGAVPPVVHRDIKSSN ILLDRSMKPRVADFGLSRQKANLHSSNVKGTFGYVDPECMSTLIFTKRSHVYSFGELI FEIMSGKNPQQGPMEYVELAAIDVENDVGWEEIADPRLQGTFDVQQLNHMAALAYTCN NPVSRKRPSMRDIVLTLSETHKPRNSRVQHGQNHLLKQRKLLSNWIFFFLKINFQTGS TRDC" mobile_element 25699481..25699547 /note="source:CACAO_Mutator_E39_scaffold_1 4430 4496" /mobile_element_type="transposon:TIR/Mutator" gene complement(25701855..25704352) /locus_tag="TCM_030072" /note="dbxref CacaoGD:Thecc1EG030072" mRNA complement(join(25701855..25702157,25702255..25702468, 25702584..25702743,25702867..25703067,25703166..25703332, 25703894..25704352)) /locus_tag="TCM_030072" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034078t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s03030.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09778t00001" CDS complement(join(25702016..25702157,25702255..25702468, 25702584..25702743,25702867..25703067,25703166..25703332, 25703894..25704020)) /locus_tag="TCM_030072" /note="paralog of Thecc1EG034078t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY28529.1" /db_xref="Phytozome:POPTR_0004s03030.1" /db_xref="TAIR:AT1G61720.1" /translation="MASQTVGKKTACVVGGTGYVASLLVKLLLEKGYAVNTTVRDPDN QKKIPHLVTLQKLGDLKIFRADLTDEGSFDVPIAGCDLVFHVATPVNFASQDPENDMI KPAIQGVLNVLKACAKAKTVKRVVLTSSAAAVSINTLKGTDLVLTEKDWTDVEFLSSA KPPTWGYPASKTLAEKAAWKFAQENNIDLITVIPSLMTGPSLTPDVPSSIGLATSLLS GNEFLVNALKGMQMLSGSISITHVEDVCRAHVFLAEKESASGRYICCAVNSSVPELAK FLNQRYPEFKVPTDFGDFPSKAKLIISSDKLINEGFSFKFGIEEIYDQTVEYMNAKGL LK" gene complement(25705504..25707628) /locus_tag="TCM_030073" /note="dbxref CacaoGD:Thecc1EG030073" mRNA complement(join(25705504..25706437,25706592..25707628)) /locus_tag="TCM_030073" /product="Transcription factor, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g32410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031127t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400037657" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1559t1" CDS complement(join(25705782..25706437,25706592..25707171)) /locus_tag="TCM_030073" /note="paralog of Thecc1EG031127t1" /codon_start=1 /product="Transcription factor, putative" /protein_id="EOY28530.1" /db_xref="Phytozome:PGSC0003DMP400037657" /db_xref="TAIR:AT5G54630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B2CZJ4" /translation="MPAAWFSLKRPGKSKAELSDTQDSKGRSSKARKPCLCSYGCSMS ISNLRDVIHGSKRHTDKAPIGSPRSIGSSDILNPITHQVVFTDSKCELKITRCSNNGA GNGGSTFVGTLRPGTPGPGDRFLEPAYICRRSFSLSRTILGGPPIFGSSNDICSKPRR SLDAGSQGFVCHKCGENFRKLEVIEAHHLSRHAVTALSEGDSSKKIVELICQTSLLGS ETEFGPIERILKVHNMQRSLAQFEDYREMVKIKANKLSKKHPRCLADGNELLRFYGTT VACSIGMKNTSSPCTLKKCGICQILRHGFSTMEKSNGFRGVFTSSIGKRALECIELDE ENRCLRKALVVCRVIAGRVQNPLENAQEMASQSSFDSLAGNFDSHSNIEELYSLNPRA LFPCFVVICKPSKQSAQKL" gene complement(25707675..25713508) /locus_tag="TCM_030074" /note="dbxref CacaoGD:Thecc1EG030074" mRNA complement(join(25707675..25708543,25708631..25708854, 25712618..25712828,25712915..25713106,25713201..25713508)) /locus_tag="TCM_030074" /product="Aldolase-type TIM barrel family protein" /inference="alignment:exonerate- protein:2:TAIR:AT4G21320.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s03420.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09516t00001" CDS complement(join(25708433..25708543,25708631..25708854, 25712618..25712828,25712915..25713106,25713201..25713452)) /locus_tag="TCM_030074" /codon_start=1 /product="Aldolase-type TIM barrel family protein" /protein_id="EOY28531.1" /db_xref="Phytozome:POPTR_0011s03420.1" /db_xref="TAIR:AT4G21320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWL1" /translation="MPSDRLWSAVHQSKKVLINKYIYIELVKQSWESFRFLSENKKMS LYYRWRKFEEDEDRPEKPRRVGVTEMRGPNHTLLIQNVLQDIFESMGQFVDGLKFSGG SHSLMPKSFLKQLIDMAHQHNVYVSTGDWAEHLIRKGHSAFKDYVEECKQMGFDTIEL NVTSLEVPEETLLRYVRMIKSGGLKAKPQFAIKFNKSDIPTGRDRAFGAYIPPSPRST EFVEDVDLLIRMAERCFEAGADMIMIDADDLCKQADSVRADIIAKVIGRLGLEKTMFE ASNAKASEWFVKQYGPKVNLFVDHSQLMDLECLRGRNLGKNHTSVLGSPYFLF" mobile_element 25709164..25712372 /note="source:INTACT43_F19_scaffold_6-int 1 3209" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25709648..25711246 /locus_tag="TCM_030075" /note="dbxref CacaoGD:Thecc1EG030075" mRNA 25709648..25711246 /locus_tag="TCM_030075" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035300t1" /note="quality class is strong-utrpoor-expresste, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.19 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2489t1" CDS 25710418..25710681 /locus_tag="TCM_030075" /note="paralog of Thecc1EG035300t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28532.1" /translation="MRMYFSLKFQLFHHVVSNNIFTASTINNDITNLPLGCAPCIKYV VTKPTFIFSHHGSVKVTTNNKSFSMVSRNFFYLFVIILIIDWF" gene 25710989..>25711487 /locus_tag="TCM_030076" /note="dbxref CacaoGD:Thecc1EG030076" mRNA 25710989..>25711487 /locus_tag="TCM_030076" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene29206" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033574t1" /note="quality class is medium-expresste, express is strong, homology is paralog strong, intron is none, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc10rLoc1847t2_G2" CDS 25711078..>25711485 /locus_tag="TCM_030076" /note="paralog of Thecc1EG033574t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28533.1" /translation="MDIALHVKLLELHCIFFHRHCFLPQVMKFDKNFLSIMLRKKLTL EFSTHLIPCSDLVTAFSFSLSFEIFPPNRSVFLQFNCHKLHTFFIGNIFELKNSFYCV EPVKEVIRMKSSFKLRNVDFDSQISGSSSSQATN" gene 25714278..25715464 /locus_tag="TCM_030077" /note="dbxref CacaoGD:Thecc1EG030077" mRNA join(25714278..25714526,25714599..25714804, 25715203..25715464) /locus_tag="TCM_030077" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29842.m003688" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007801t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s03410.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1416t6" CDS join(25714425..25714526,25714599..25714804, 25715203..25715413) /locus_tag="TCM_030077" /note="paralog of Thecc1EG007801t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28534.1" /db_xref="Phytozome:POPTR_0011s03410.1" /db_xref="TAIR:AT4G21310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81898" /translation="MAAKNVGFVICLLIMAMDITAGILGIQAEIAENKVKHLRMWIFE CRDPSFQAFKLGLAAAVLLGLAHVIGNMLAGCVCIWTKEDLDRASANKQLAVASLIFS WIILAVGFSMLIIGTLSNSKSRKTCGISHHRLFSIGGILCFIHGLFTVAYYVSATAAA REERTNRPRANA" gene complement(25715489..25716308) /locus_tag="TCM_030078" /note="dbxref CacaoGD:Thecc1EG030078" mRNA complement(join(25715489..25715906,25716007..25716308)) /locus_tag="TCM_030078" /product="Histone H2A 10" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g035650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031125t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s44140.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16935t1" CDS complement(join(25715688..25715906,25716007..25716195)) /locus_tag="TCM_030078" /note="paralog of Thecc1EG031125t1" /codon_start=1 /product="Histone H2A 10" /protein_id="EOY28535.1" /db_xref="Phytozome:POPTR_0001s44140.1" /db_xref="TAIR:AT1G51060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LD28" /translation="MAGRGKAIGSGAKKMGQSRSQKAGLQFPVGRIARFLKAGKYAER VGAGAPVYLAAVLEYLAAEVLELAGNAARDNKRTRIVPRHIQLAVRNDEELSRLLGTV TIANGGVLPNIHNMLLPKKTGTGSKAGGPAADD" mobile_element 25716951..25717373 /note="source:scaffold_9_CACTA_0946 17866 18226" /mobile_element_type="transposon:TIR/CACTA" gene complement(25717367..25719175) /locus_tag="TCM_030079" /note="dbxref CacaoGD:Thecc1EG030079" mRNA complement(join(25717367..25717679,25717794..25718089, 25718525..25719175)) /locus_tag="TCM_030079" /product="Photosystem II subunit Q-2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s03390.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s03390.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08062t00001" CDS complement(join(25717581..25717679,25717794..25718089, 25718525..25718825)) /locus_tag="TCM_030079" /codon_start=1 /product="Photosystem II subunit Q-2" /protein_id="EOY28536.1" /db_xref="Phytozome:POPTR_0011s03390.1" /db_xref="TAIR:AT4G05180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q41932" /translation="MAQAMASMAGLRGSSQAVLEGSLQLSGQTRLNIAGNSRVAVARP GFTVRAQQAPTEPETGRRAVLGLVAASLATGSFVQAVLADARTIKVGPPPPPSGGLPG TLNSDEPRDLDLPYKNRFYIQPLSPAQAVARAKESAKDIVGVKSLIDKKAWPYVQNDL RLTASYLRYDLNTVISAKSKAEKKSLQELTGKLFDTISNLDHAAKIKSTPEAEKYYAQ TVSTLNDVLAKLG" gene 25720103..25725505 /locus_tag="TCM_030080" /note="dbxref CacaoGD:Thecc1EG030080" mRNA join(25720103..25720425,25720519..25720770, 25720868..25721012,25721088..25721197,25721284..25721403, 25721518..25721721,25722079..25722288,25722365..25722439, 25722561..25722707,25722780..25722918,25723021..25723130, 25723441..25723602,25723682..25723902,25724245..25724326, 25724423..25724527,25724606..25724710,25724804..25725505) /locus_tag="TCM_030080" /product="Kinesin 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s03380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031121t1" /inference="similar to AA sequence:ricco:29842.m003683" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8258t2" CDS join(25720381..25720425,25720519..25720770, 25720868..25721012,25721088..25721197,25721284..25721403, 25721518..25721721,25722079..25722288,25722365..25722439, 25722561..25722707,25722780..25722918,25723021..25723130, 25723441..25723602,25723682..25723902,25724245..25724326, 25724423..25724527,25724606..25724710,25724804..25724983) /locus_tag="TCM_030080" /note="dbxref ricco:29842.m003683; paralog of Thecc1EG031121t1" /codon_start=1 /product="Kinesin 1" /protein_id="EOY28537.1" /db_xref="TAIR:AT4G21270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q07970" /translation="MASRNQNRPPRSPSTRKEIGDENPLDKRRRVGAVGRGVGLTGTG RTRQAFAVVNNRQDVTTASNADAGNAEECPNHEFTKEEVEALLNEKPKAKKFDLRAKY EHAADHNKRLKLCVKWFQQCDESHVLDKEKLKNSLESAEKKCMDTELEKKKKEEELNA VISQLSDNNASLQEKLSKEVSEKLDAIDRHRNENEARVAAEKSVASLTEELEKAQQDI AAANERAASLDNTHKRLQEYILSLQQYNSKLITDLEAVRESLKRVEKEKLTIVENLST LRGHCSSLQEQLTLSRASQDDAVNQKETLVNEVKCLRGELQQVRDDRDRQVSQVQALS AEIVKFKESTGKSFAELDNLTMKSKSLEETCSSQREQMRILELQLAAANEKLKMADLS ASETRMEYLEQKSTMQELQDRLADMEHKLIEGENLRKKLHNTILELKGNIRVFCRVRP LLPDDGAATEGAVVSYPTSTESLGRGIDLIQSGQKYPFTFDKVFNHEASQRDVFVEIS QLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPEAPEQKGLIPRSLEQIFQISQSLQAQ GWKYKMQASMLEIYNETIRDLLSTNRSICSDPTRPESAVSGKQYTIKHDANGNTHVSD LTIVDVSSIAEISSLLRQAAQSRSVGRTHMNEQSSRSHMVFTLRISGVNEGTEQQVQG VLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHVPFRNSKLT YLLQPCLGGDSKTLMFVNVSPDPSSVGESLCSLRFAARVNACEIGVPRRQMTLRPADS RLSCG" gene 25725563..25727547 /locus_tag="TCM_030081" /note="dbxref CacaoGD:Thecc1EG030081" mRNA join(25725563..25725846,25726100..25726222, 25727355..25727547) /locus_tag="TCM_030081" /product="C-terminal cysteine residue is changed to a serine 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003682" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031119t1" /inference="similar to AA sequence:ricco:29842.m003682" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS join(25725745..25725846,25726100..25726222, 25727355..25727507) /locus_tag="TCM_030081" /note="dbxref ricco:29842.m003682; paralog of Thecc1EG031119t1" /codon_start=1 /product="C-terminal cysteine residue is changed to a serine 1" /protein_id="EOY28538.1" /db_xref="TAIR:AT1G11530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LDI5" /translation="MEGQEQQSKSRVVKIDSVESWDFYVNQATNQGCPIVVHFTASWC MPSVAMNPFFEELASSFQDVLFLTVDVDDVKEVATRMEIKAMPTFLLMRGGTVVDKLV GANPEEIRKRIHGFVQSIRLYVA" gene 25728321..25730617 /locus_tag="TCM_030082" /note="dbxref CacaoGD:Thecc1EG030082" mRNA join(25728321..25728838,25729424..25729501, 25729579..25729741,25729915..25730617) /locus_tag="TCM_030082" /product="DNA binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:frave:gene24654.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007777t1" /inference="similar to AA sequence:frave:gene24654" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b029098t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc351t14" mRNA join(25728533..25728838,25729186..25729350, 25729424..25729510,25729579..25729741,25729915..25730546) /locus_tag="TCM_030082" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:frave:gene24654.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007777t1" /inference="similar to AA sequence:frave:gene24654" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc351t14" CDS join(25728657..25728838,25729186..25729350, 25729424..25729510,25729579..25729741,25729915..25730181) /locus_tag="TCM_030082" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene24654; paralog of Thecc1EG007777t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /protein_id="EOY28539.1" /db_xref="TAIR:AT5G54680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SA09" /translation="MMSRQPNGEDLVSSENPSGWIFDDYGLLEDIPVPGGDLPSLDPA APIWSSQSLTCSTPPLSVEFNESFGNSDSLNETGFRKRYTATQPLTFFYCFPLLCFRN AVSALASAPIYCFRARSGSCSASGSKACREKMRRDRLNDRHVLFLELGSILDPGRPLK VDKAVILVDAVRMVTQLRDEAQKLRESNESLQEKINELKAEKNELRDEKQRLKTEKEN LEQQVKALGTQPGFLPHPPAIPTPFSTPGQVVGGKLVPFVGYPGVSMWQFLPPASVDT SQDHILRPPVA" CDS join(25728657..25728838,25729424..25729501, 25729579..25729741,25729915..25730181) /locus_tag="TCM_030082" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene24654; paralog of Thecc1EG007777t1" /codon_start=1 /product="DNA binding protein, putative isoform 2" /protein_id="EOY28540.1" /db_xref="TAIR:AT5G54680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SA09" /translation="MMSRQPNGEDLVSSENPSGWIFDDYGLLEDIPVPGGDLPSLDPA APIWSSQSLTCSTPPLRARSGSCSASGSKACREKMRRDRLNDRFLELGSILDPGRPLK VDKAVILVDAVRMVTQLRDEAQKLRESNESLQEKINELKAEKNELRDEKQRLKTEKEN LEQQVKALGTQPGFLPHPPAIPTPFSTPGQVVGGKLVPFVGYPGVSMWQFLPPASVDT SQDHILRPPVA" gene complement(25730754..25734335) /locus_tag="TCM_030083" /note="dbxref CacaoGD:Thecc1EG030083" mRNA complement(join(25730754..25731166,25731270..25731392, 25731503..25731637,25732665..25733936,25734196..25734335)) /locus_tag="TCM_030083" /product="Sulfite exporter TauE/SafE family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene24653" /inference="similar to AA sequence:Phytozome:POPTR_0011s03350.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07076t00001" CDS complement(join(25730858..25731166,25731270..25731392, 25731503..25731637,25732665..25733468)) /locus_tag="TCM_030083" /codon_start=1 /product="Sulfite exporter TauE/SafE family protein, putative" /protein_id="EOY28541.1" /db_xref="Phytozome:POPTR_0011s03350.1" /db_xref="TAIR:AT1G61740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TRV1" /translation="MKIQNLLRWIGLTLPIYIILASQNQSHATQTQPIFDDLTTDSFI KKTLHWKRHLIKFQGNRLKLSAPTVLSGVFCFIASSISSAGGVGGGGLYIPILTIVAG LDLKTASTFSAFMVAGGSTANVIYNLRTTSSKFGGKTLIDYDVALLSEPCMLLGVSVG VVCNLVFPEWLITILFATFLAWSTFKTCRNGIGLWKMESEHQETRNRCEKVENGTCGE SGEINDLEEPLVSTEGKVKSRFPWKKLVVLVMVWFSFFVIYLLRGNRYGQGVMPMKPC GVGYWTLSLFQMPLAIAFTAWILKRKEAIACQGPNKQGVNKLIFPFMALLAGGLGGVF GIGGGMLISPLLLHVGVAPEVTAATCSFMVFFSSTMSAFQYLLLGMKQTGTALIFSVI CFVASLLGLVVVQKAIRELGRASLIVFSVGIVMALSAILMTSFGALNVWDDYTSGSYM GFKQPC" gene 25736220..25738284 /locus_tag="TCM_030084" /note="dbxref CacaoGD:Thecc1EG030084" mRNA join(25736220..25737453,25737616..25738284) /locus_tag="TCM_030084" /product="Receptor-like protein kinase-related family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29842.m003678" /inference="similar to AA sequence:ricco:29842.m003678" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8038t1" CDS join(25736703..25737453,25737616..25737692) /locus_tag="TCM_030084" /note="dbxref ricco:29842.m003678" /codon_start=1 /product="Receptor-like protein kinase-related family protein, putative" /protein_id="EOY28542.1" /db_xref="TAIR:AT5G48540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYV2" /translation="MLYFSGPSFIIFLVLMLSISICRADSNVNSGWQCSEADNFTSES SFRINLDNLLSLLTEKGPLHNGYFKTTVGRSSGKIYGLIQCREDVSTENCANCTRESI AVALHDCSKSRKVQVWFTWCFLRYSNEHFFGVWDQSSMARVNDTNFDDASVVSKGLIF MSEVATTAPKQPLMFHTAVLDAGQFGKRYGMAQCTRDISRTDCSKCLDSQLVTFRTTI GNKRGWEVYGSSCSMWYHDYQFYFNISIPKNDGARRLSLHGVATGITMAVLMLFFVP" gene complement(25738275..25742650) /locus_tag="TCM_030085" /note="dbxref CacaoGD:Thecc1EG030085" mRNA complement(join(25738275..25739013,25739106..25739256, 25739514..25739751,25739973..25740123,25740368..25740570, 25740657..25740677,25740966..25741005,25741125..25741311, 25741377..25741608,25741996..25742650)) /locus_tag="TCM_030085" /product="S-locus lectin protein kinase family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030126t2" /inference="similar to AA sequence:ricco:29842.m003676" /note="quality class is medium, express is weak, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.22 coverage" CDS complement(join(25738702..25739013,25739106..25739256, 25739514..25739751,25739973..25740123,25740368..25740570, 25740657..25740677,25740966..25741005,25741125..25741311, 25741377..25741608,25741996..25742101)) /locus_tag="TCM_030085" /note="dbxref ricco:29842.m003676; paralog of Thecc1EG030126t2" /codon_start=1 /product="S-locus lectin protein kinase family protein" /protein_id="EOY28543.1" /translation="MTLPNLLWTAAHFTHSSCGNIPKCEITWCRTLQSSRPDNDTATA GYKSNLTDVLDSISSKASDHSFYNDSLNGIYSLFLCRGDVSSDVCQDCVSNATQTLTQ RCPSDKSAIIWVSMWNTLNKTSPDEGNIGAQGLIFSLVDHAPYTENMFETKETVVGNG PDRRYGLVQCSRDLNFYEQPSAPPPDNEVRKRRQKDEGTSQVILLRGCQGSKRADLME AGIHLSDEDHSGELHHINLATIQSATNNFSRGNKLGEGGFGPVYKGLEEFKNEVKLIF KLQHKNLVRLLGYCLEEDEKLLVYEYMANTSLDAFLFDPEKCKVLDWEKRSNIINGTA RGLQYLHEDSRLKIIHRDLKASNVLLDDGMNPKISDFGTARIFGGNQIEANTERIVGT YGYMAPEYALEGLFSNKSDVYSFGILMLEILSGKKNRGFYRQDCGQSLITYAWQLWKD GRGLELIDSNIADGCPIHDVARWIHIALLCVQDDPALRPTMSSVILMLGSRSVNLPQP SSPPYSAARFVTTSDLSSTTQTGTGILTSGQSSTTASS" gene complement(25742623..>25772765) /locus_tag="TCM_030086" /note="dbxref CacaoGD:Thecc1EG030086" mRNA complement(join(25742623..25743864,25743974..25744124, 25744308..25744545,25744767..25744977,25745116..25745240, 25745511..25745636,25746324..25747270)) /locus_tag="TCM_030086" /product="Cysteine-rich RLK 29, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006505001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030102t1" /inference="similar to AA sequence:Phytozome:Glyma20g27480.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8175t2" mRNA complement(join(25743089..25743864,25743974..25744124, 25744308..25744545,25744767..25744977,25745116..25745240, 25745511..25745636,25746324..25746999, 25772632..>25772765)) /locus_tag="TCM_030086" /product="Cysteine-rich RLK 29, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006505001" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g002590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030102t1" /inference="similar to AA sequence:Phytozome:Glyma20g27480.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc127t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8175t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc154t50" mRNA complement(join(25743217..25743864,25743974..25744124, 25744308..25744545,25744805..25744977,25745116..25745240, 25745511..25745636,25746324..25747196)) /locus_tag="TCM_030086" /product="Cysteine-rich RLK 29, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g002590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030102t1" /inference="similar to AA sequence:Phytozome:Glyma20g27480.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8175t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8175t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc154t50" CDS complement(join(25743514..25743864,25743974..25744124, 25744308..25744545,25744767..25744977,25745116..25745240, 25745511..25745636,25746324..25746999, 25772632..>25772763)) /locus_tag="TCM_030086" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030102t1" /codon_start=1 /product="Cysteine-rich RLK 29, putative isoform 2" /protein_id="EOY28545.1" /db_xref="Phytozome:Glyma20g27480.1" /db_xref="TAIR:AT4G21410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1T8" /translation="GLFLFYWSVIVSLAAIAFADDYDNYFLCRYVEDKGNYTANSTYQ ANLNGIVSQLSSLTEFNYGFFNLSAGESPDKVNAIALCSGDRTQDECNSCLNHTATVL LQRCPWYKEATAWYDFCLVRYANRDIFGQLENEPRTCAYNERNASNPEQFNNGLSELL NNLSSIAAAGGPLRKYEAGNAPAGNLQTVYAAVQCTPDMDEQNCTACLNHGKQEFLKC CYGRIGCRVLRPTCILRYESDPFYNQTLVPLPSSPPSPTPPGPTSPPTPRGGKGNNTT RTVIIVIASVVSFLILIIVSRCIFSRRRKPFEKVETADVQITGAESLQFDFASVLDAT NNFSDANKLGQGGFGAVYKGQLPNGQKIAVKRLSRDSGQGDLEFKNEVLLVAKLQHRN LVRLLGFCLEGQERLLIYEFVPNRSLDHFIFDPIKRAQLDWETRYKIIAGIARGLLYL HEDSRLRIIHRDLKASNILLDTDMIPKIADFGMARLFGQDESQANTSRIVGTYGYMAP EYVINGQFSVKSDVFSFGVLLLEIISGQKSNRFRYEETEEYLLNFAWRNWREGTALNL IDPTLSDGSRDDMMRCIHIGLLCVQENVAGRPTMASVVFMLNSFSTTLAVPSQPAFAL QSNNIESDRSSSLGTNSWPSESNQSKNELLPVSQNEVSITELSPR" CDS complement(join(25743514..25743864,25743974..25744124, 25744308..25744545,25744767..25744977,25745116..25745240, 25745511..25745636,25746324..25747191)) /locus_tag="TCM_030086" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030102t1" /codon_start=1 /product="Cysteine-rich RLK 29, putative isoform 1" /protein_id="EOY28544.1" /db_xref="Phytozome:Glyma20g27480.1" /db_xref="TAIR:AT4G21410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1T8" /translation="MASCTKTGEGQGETLAMGCSGRLLFYCSVIVSLAALALADESDP YFECRHVEDKGNYTANSTYQANLNGIVSQLSSLTEFNYGFFNLSAGESPDKVNAIALC SGDRTQDECNSCLNHTATVLLQRCPWYKEATAWYDFCLVRYANRDIFGQLENEPRTCA YNERNASNPEQFNNGLSELLNNLSSIAAAGGPLRKYEAGNAPAGNLQTVYAAVQCTPD MDEQNCTACLNHGKQEFLKCCYGRIGCRVLRPTCILRYESDPFYNQTLVPLPSSPPSP TPPGPTSPPTPRGGKGNNTTRTVIIVIASVVSFLILIIVSRCIFSRRRKPFEKVETAD VQITGAESLQFDFASVLDATNNFSDANKLGQGGFGAVYKGQLPNGQKIAVKRLSRDSG QGDLEFKNEVLLVAKLQHRNLVRLLGFCLEGQERLLIYEFVPNRSLDHFIFDPIKRAQ LDWETRYKIIAGIARGLLYLHEDSRLRIIHRDLKASNILLDTDMIPKIADFGMARLFG QDESQANTSRIVGTYGYMAPEYVINGQFSVKSDVFSFGVLLLEIISGQKSNRFRYEET EEYLLNFAWRNWREGTALNLIDPTLSDGSRDDMMRCIHIGLLCVQENVAGRPTMASVV FMLNSFSTTLAVPSQPAFALQSNNIESDRSSSLGTNSWPSESNQSKNELLPVSQNEVS ITELSPR" gene complement(<25743981..25787576) /locus_tag="TCM_030093" /note="dbxref CacaoGD:Thecc1EG030093" mRNA complement(join(<25743981..25744124,25744308..25744491, 25775960..25776013,25776194..25776404,25776516..25776637, 25776866..25776988,25777459..25778320,25781486..25781528, 25787417..25787576)) /locus_tag="TCM_030093" /product="Cysteine-rich RLK 29, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006906001" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s03260.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030099t1" /inference="similar to AA sequence:Phytozome:Glyma01g01730.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is weak, protein is partial3; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc307t14; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc307t23; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8175t2" CDS complement(join(<25743983..25744124,25744308..25744491, 25775960..25776013,25776194..25776404,25776516..25776637, 25776866..25776988,25777459..25778257)) /locus_tag="TCM_030093" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030099t1" /codon_start=1 /product="Cysteine-rich RLK 29, putative isoform 2" /protein_id="EOY28548.1" /db_xref="Phytozome:Glyma01g01730.1" /db_xref="TAIR:AT4G21410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1T8" /translation="MRFSGLLLFFYSALLFLAIFTLGADPYFQSRCVNSAGNYTANST YQANLNSVFSQVTSLTEFNYGFYNLSAGQNPNKVNAIALCRGDRNQDDCNSCLNDTVS ELRQRCPLYNEVVGWSEFCMLRYANRDILGKMECSPEACLYNTLDVTNADQFNQALDT LLNKLSSRAAAAGPLRKYAADNSTVGVLQTVYAMVQCTPDLSEQECGKCLSVAKNGIG NCCLGKRGCRVLRPSCFLRFESSPFYQTPVPLPSPPPSPTSSSPPSPGEKGNSSTRNI IVVVASVVGVVILITSICIFVRARKSWEKLETVDEIIRAESLQFDFATVRVATNNFSD ANKLGQGGFGAVYKGLLQNGQEVAVKRLSTDSGQGEVEFKNEVLLVAKLHHRNLVRLL GFCLEGRERLLIYEFVPNTSLDHFIFDQVKRAQLDWERRYKIIKGIARGLLYLHEDSR LRIIHRDLKASNILLDTDMIPKIADFGMARLFGQDESQANTSRIVGTYGYMAPEYVIN GQFSVKSDVFSFGVLLLEIISGQKSNRFRYEETEEYL" CDS complement(join(25744461..25744545,25744805..25744977, 25745116..25745240,25745511..25745636,25746324..25747191)) /locus_tag="TCM_030086" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG030102t1" /codon_start=1 /product="Cysteine-rich RLK 29, putative isoform 3" /protein_id="EOY28546.1" /db_xref="Phytozome:Glyma20g27480.2" /db_xref="TAIR:AT4G21410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1T8" /translation="MASCTKTGEGQGETLAMGCSGRLLFYCSVIVSLAALALADESDP YFECRHVEDKGNYTANSTYQANLNGIVSQLSSLTEFNYGFFNLSAGESPDKVNAIALC SGDRTQDECNSCLNHTATVLLQRCPWYKEATAWYDFCLVRYANRDIFGQLENEPRTCA YNERNASNPEQFNNGLSELLNNLSSIAAAGGPLRKYEAGNAPAGNLQTVYAAVQCTPD MDEQNCTACLNHGKQEFLKCCYGRIGCRVLRPTCILRYESDPFYNQTLVPLPSSPPSP TPPGPTSPPTPRGGKGNNTTRTVIIVIASVVSFLILIIVSRCIFSRRRKPFEKVETAD VQITGAESLQFDFASVLDATNNFSDANKLGQGGFGAVYKGQLPNGQKIAVKRLSRDSG QGDLEFKNEVLLVAKLQHRNLVRLLGFCLEGQERLLIYESNQACTIGLGNTLQNHSRH CTWTPLPS" mobile_element 25749553..25751835 /note="source:INTACT164_F159_scaffold_7-int 130 1130" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25757330..25772930) /locus_tag="TCM_030088" /note="dbxref CacaoGD:Thecc1EG030088" mRNA complement(join(25757330..25757882,25757986..25759013, 25759751..25759850)) /locus_tag="TCM_030088" /product="Receptor protein kinase isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030086t1" /inference="similar to AA sequence:Phytozome:Glyma20g27510.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09354t00001" mRNA complement(join(25757623..25757887,25757986..25758719, 25772693..25772930)) /locus_tag="TCM_030088" /product="Receptor protein kinase isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030086t2" /inference="similar to AA sequence:Phytozome:Glyma20g27510.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc149t10; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc149t10; inference alignment:Newbler:10:TSA:cgbaB_g09354t00001" mRNA complement(join(25757623..25757887,25757986..25759219)) /locus_tag="TCM_030088" /product="Receptor protein kinase isoform 3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030086t1" /inference="similar to AA sequence:Phytozome:Glyma20g27510.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc153t4; inference alignment:Newbler:10:TSA:cgbaB_g09354t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc149t10" CDS complement(join(25757662..25757882,25757986..25758796)) /locus_tag="TCM_030088" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030086t1" /codon_start=1 /product="Receptor protein kinase isoform 1" /protein_id="EOY28549.1" /db_xref="Phytozome:Glyma20g27510.1" /db_xref="TAIR:AT4G21410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYJ2" /translation="MECSGRLLFYCSLILSLAALALADDPYFECGFVEDRGNYTANSS YQANLNRIVSQLSSLTEFNYGFFNLSAGESPDEVKAIALCTGDRTQDECNSCLHRTAT ELIQRCPWHKEATAWSEFCLVRYANRDIFGQLESEPRTCAFNTRKASNPVQFNDGLSE LLNNLSNIAAAGGPLRKYAAGNATAGNLQTIYAAVQCTPDMDKQNCTHCLDDGKAEFL NCCYGRIGCRVLRPTCILRFESNPFYHTAVPLPSLPPSPTPPGPTTSPTSIGGGNQQN GRRGLIARCRFLYDSKLCLNVKLLRRFTYLCSKTVDICAVFFFCHLGLVTLLFSYMHI SAAVFGSFC" CDS complement(join(25757883..25757887,25757986..25758719, 25772693..25772775)) /locus_tag="TCM_030088" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030086t2" /codon_start=1 /product="Receptor protein kinase isoform 2" /protein_id="EOY28550.1" /db_xref="Phytozome:Glyma20g27510.1" /db_xref="TAIR:AT4G21410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6F1T6" /translation="MGCSGLFLFYWSVIVSLAAIAFADDYDNYFECGFVEDRGNYTAN SSYQANLNRIVSQLSSLTEFNYGFFNLSAGESPDEVKAIALCTGDRTQDECNSCLHRT ATELIQRCPWHKEATAWSEFCLVRYANRDIFGQLESEPRTCAFNTRKASNPVQFNDGL SELLNNLSNIAAAGGPLRKYAAGNATAGNLQTIYAAVQCTPDMDKQNCTHCLDDGKAE FLNCCYGRIGCRVLRPTCILRFESNPFYHTAVPLPSLPPSPTPPGPTTSPTSIGG" CDS complement(join(25757883..25757887,25757986..25758796)) /locus_tag="TCM_030088" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG030086t1" /codon_start=1 /product="Receptor protein kinase isoform 3" /protein_id="EOY28551.1" /db_xref="Phytozome:Glyma20g27510.1" /db_xref="TAIR:AT4G21410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYJ2" /translation="MECSGRLLFYCSLILSLAALALADDPYFECGFVEDRGNYTANSS YQANLNRIVSQLSSLTEFNYGFFNLSAGESPDEVKAIALCTGDRTQDECNSCLHRTAT ELIQRCPWHKEATAWSEFCLVRYANRDIFGQLESEPRTCAFNTRKASNPVQFNDGLSE LLNNLSNIAAAGGPLRKYAAGNATAGNLQTIYAAVQCTPDMDKQNCTHCLDDGKAEFL NCCYGRIGCRVLRPTCILRFESNPFYHTAVPLPSLPPSPTPPGPTTSPTSIGG" mobile_element complement(25759399..25759639) /note="source:CACAO_MITE153_scaffold_9 487 727" /mobile_element_type="transposon:TIR/MITE" mobile_element 25759638..25761915 /note="source:CACAO_Helitron_S_E29_scaffold_3 4231 6491" /mobile_element_type="transposon:Helitron" mobile_element complement(25759640..25759721) /note="source:CACAO_hAT_E2557_scaffold_6 3314 3656" /mobile_element_type="transposon:TIR/hAT" gene 25759665..25760983 /locus_tag="TCM_030089" /note="dbxref CacaoGD:Thecc1EG030089" mRNA 25759665..25760983 /locus_tag="TCM_030089" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.17 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc153t3" CDS 25759737..25759994 /locus_tag="TCM_030089" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28552.1" /translation="MAGRTLSPTTMSNGALVTNSLVPEPHYRVVQIFGQPHFQRRGES KPEKTDHLQKAIKKKTETKKTQQRTQKKKSKKKEEEEERER" mobile_element 25760034..25761922 /note="source:INTACT59_F126_scaffold_9-int 676 2533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25761917..25762362) /note="source:CACAO_MITE153_scaffold_9 63 494" /mobile_element_type="transposon:TIR/MITE" mobile_element 25762246..25762382 /note="source:scaffold_9_CACTA_0943 4576 4707" /mobile_element_type="transposon:TIR/CACTA" gene complement(25762664..25766228) /locus_tag="TCM_030090" /note="dbxref CacaoGD:Thecc1EG030090" mRNA complement(join(25762664..25763076,25765520..25766228)) /locus_tag="TCM_030090" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is ortholog weak, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.21 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc154t54" CDS complement(join(25762986..25763076,25765520..25765800)) /locus_tag="TCM_030090" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28553.1" /translation="MQVSRGACFYNIQNANNTDKFNHALIDLLNNLSNQAAVAGSLGK YATNNSTMGFFQTVLGLSPCNSTLSLFGLRQITFRMQISLVKVDLGLLSRIVENFTAF PLKMSLAAPTWTRLAFELKDF" mobile_element complement(25764870..25765404) /note="source:CACAO_M_S_E5904_F9_scaffold_2 1 540" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25766923..25769516 /note="source:CACAO_M_E49289_F74_scaffold_6 1 2594" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25769946..25772815) /locus_tag="TCM_030092" /note="dbxref CacaoGD:Thecc1EG030092" mRNA complement(join(25769946..25770128,25771152..25771728, 25771832..25772815)) /locus_tag="TCM_030092" /product="Receptor protein kinase isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030086t2" /inference="similar to AA sequence:Phytozome:Glyma20g27510.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1184t1" mRNA complement(join(25771371..25771733,25771832..25772800)) /locus_tag="TCM_030092" /product="Receptor protein kinase isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030086t2" /inference="similar to AA sequence:Phytozome:Glyma20g27510.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8056t1; alternateUTRof:Thecc1EG030092t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1184t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc149t10" CDS complement(25771936..25772775) /locus_tag="TCM_030092" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030086t2" /codon_start=1 /product="Receptor protein kinase isoform 1" /protein_id="EOY28554.1" /db_xref="Phytozome:Glyma20g27510.1" /db_xref="TAIR:AT4G21410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6F1T6" /translation="MGCSGLFLFYWSVIVSLAAIAFADDYDNYFLCRYVEDKGNYTAN STYQANLNRIVSQLSSPTQFNYGFYNLSAGQSPDEVNAIALCTGDRTQVECNSCLNRT ATELMQRCPWYKEATAWSQFCLVRYANRDIFGQLENEPRTCAFNPKNASNPEQFNDGL IELLNNLSNIAAAGGPLRKYAAGNLQTIYAAVQCTPDMDEQNCTACLNYGREELSKCC KGRLGCRVLRPTCILRYESGPFYQTAVPPPSPPPSPSGREGLARAPAPPKLLKFNNFF YFF" CDS complement(25771936..25772775) /locus_tag="TCM_030092" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030086t2" /codon_start=1 /product="Receptor protein kinase isoform 1" /protein_id="EOY28555.1" /db_xref="Phytozome:Glyma20g27510.1" /db_xref="TAIR:AT4G21410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6F1T6" /translation="MGCSGLFLFYWSVIVSLAAIAFADDYDNYFLCRYVEDKGNYTAN STYQANLNRIVSQLSSPTQFNYGFYNLSAGQSPDEVNAIALCTGDRTQVECNSCLNRT ATELMQRCPWYKEATAWSQFCLVRYANRDIFGQLENEPRTCAFNPKNASNPEQFNDGL IELLNNLSNIAAAGGPLRKYAAGNLQTIYAAVQCTPDMDEQNCTACLNYGREELSKCC KGRLGCRVLRPTCILRYESGPFYQTAVPPPSPPPSPSGREGLARAPAPPKLLKFNNFF YFF" mobile_element 25773047..25773480 /note="source:INTACT164_F159_scaffold_7-int 10076 10466" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(25774783..25775321,25775456..25775606, 25775776..25776013,25776194..25776404,25776516..25776637, 25776866..25776988,25777459..25778385)) /locus_tag="TCM_030093" /product="Cysteine-rich RLK 29, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006906001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030102t1" /inference="similar to AA sequence:ricco:29842.m003674" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc307t23" CDS complement(join(25775004..25775321,25775456..25775606, 25775776..25776013,25776194..25776404,25776516..25776637, 25776866..25776988,25777459..25778257)) /locus_tag="TCM_030093" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003674; paralog of Thecc1EG030102t1" /codon_start=1 /product="Cysteine-rich RLK 29, putative isoform 1" /protein_id="EOY28547.1" /db_xref="TAIR:AT4G21410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1T8" /translation="MRFSGLLLFFYSALLFLAIFTLGADPYFQSRCVNSAGNYTANST YQANLNSVFSQVTSLTEFNYGFYNLSAGQNPNKVNAIALCRGDRNQDDCNSCLNDTVS ELRQRCPLYNEVVGWSEFCMLRYANRDILGKMECSPEACLYNTLDVTNADQFNQALDT LLNKLSSRAAAAGPLRKYAADNSTVGVLQTVYAMVQCTPDLSEQECGKCLSVAKNGIG NCCLGKRGCRVLRPSCFLRFESSPFYQTPVPLPSPPPSPTSSSPPSPGEKGNSSTRNI IVVVASVVGVVILITSICIFVRARKSWEKLETVDEIIRAESLQFDFATVRVATNNFSD ANKLGQGGFGAVYKGLLQNGQEVAVKRLSTDSGQGEVEFKNEVLLVAKLHHRNLVRLL GFCLEGRERLLIYEFVPNTSLDHFIFDQVKRAQLDWERRYKIIKGIARGLLYLHEDSQ LRIIHRDLKASNVLLDAVMTPKIADFGIAKLFLRDETQGNTSRIMGTYGYMAPEYAMY GHFSVKSDIFSFGVIILEIISGQKNNCFHNEESVEDLLSCARKNWREGTALNLIDPTL RDGSRNEMLRCIHIGLLCVQENVADRPTMATVVLMLNSSSISLPLLLMHSNIESDMSS PSKYYSRVSKSKQSKSETIPLLQEQGFNY" gene complement(25779153..25782287) /locus_tag="TCM_030095" /note="dbxref CacaoGD:Thecc1EG030095" mRNA complement(join(25779153..25779703,25779906..25779993, 25780160..25780397,25780560..25780770,25780889..25781010, 25781658..25781783,25781873..25781919,25782264..25782287)) /locus_tag="TCM_030095" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 29" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0499s00200.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030102t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s02560.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8268t1" CDS complement(join(25779356..25779703,25779906..25779993, 25780160..25780397,25780560..25780725)) /locus_tag="TCM_030095" /note="paralog of Thecc1EG030102t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 29" /protein_id="EOY28556.1" /db_xref="Phytozome:POPTR_0004s02560.1" /db_xref="TAIR:AT4G21410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1T8" /translation="MDSGQGDVELKNEVLLVAKLQHRNLVRLLGFCLEGRERLLIYEF VLNTSLDHFIFDQVKHAQLDWKMRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNVLL DAKMIPKITDFGMARLFVQDETHGNTSKIVGTYGYMAPEYAIHGQFSIRSDVFSFGVI ILEIVWTNWREGTALNLIDPTLRDGSRNEILRCIHIGLLCVQENVANRPTMATVVLML NSFSISLPMPSQPAFFMDSNIDSDMSSSRGYQSRISESKQSKSEPIPQSQNEASITEP YPR" mobile_element 25782377..25783785 /note="source:INTACT1240F_F10_scaffold_6-int 1 1409" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25784499..25786203 /note="source:INTACT1240F_F10_scaffold_6-int 1410 3114" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25786204..25786229) /note="source:CACAO_M_E73089_F74_scaffold_10 4864 4874" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25788691..25793142) /locus_tag="TCM_030099" /note="dbxref CacaoGD:Thecc1EG030099" mRNA complement(join(25788691..25789284,25789423..25789573, 25789745..25789982,25790165..25790365,25790864..25790965, 25792207..25792752)) /locus_tag="TCM_030099" /product="Cysteine-rich RLK 29, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006739001.2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0499s00200.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030102t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s02560.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01650t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8260t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc369t32" mRNA complement(join(25788726..25789284,25789423..25789573, 25789745..25789982,25790165..25790375,25790490..25790611, 25790840..25790965,25792207..25793142)) /locus_tag="TCM_030099" /product="Cysteine-rich RLK 29, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0499s00200.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030102t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s02560.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8260t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8260t1" CDS complement(join(25788937..25789284,25789423..25789573, 25789745..25789982,25790165..25790375,25790490..25790611, 25790840..25790965,25792207..25793011)) /locus_tag="TCM_030099" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030102t1" /codon_start=1 /product="Cysteine-rich RLK 29, putative isoform 1" /protein_id="EOY28557.1" /db_xref="Phytozome:POPTR_0004s02560.1" /db_xref="TAIR:AT4G21410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1T8" /translation="MAMGFSRVLLLFYSVLLFLATLTLGADPFFQARCVNTAGNYTAN STYQNNLDNIFSQVTSLTEFNYGFHNLSSGQNPNKVNAIALCRGDTNLDNCNSCLNET VSELRQRCPLYKEVVGWSEFCMLRYANRDILGEMEVSPSACLLNTQDVTNADQFNQAL ENLLNNLSSQAAAEGPLRKYAADNLTAGVFQTVYTMVQCTPDLSEQECGECLTVVKNG IGNCCLGKRGCRVLRPSCFLRFESSPFFETPVPLPSPPPSPTTPPPPATGGKGNNTTR TIIIVVASVVGVVILITISICIFLRARKNWEKVETVDEIIRVESLQFDFATIRVATDN FSDANKLGQGGFGAVYKGLLPDGQEVAVKRLSTDSGQGEVEFKNEVLLVAKLQHRNLV RLLGFCLEGRERLLIYEFVPNASLDHFIFDQVKRIQLDWERRYKIIGGIARGLLYLHE DSRLRIIHRDLKASNILLDAEMIPKIADFGMARLFVRDETQGNTSRIVGTYGYMAPEY AMHGQFSVKSDVFSFGVIILEIISGQKNNCFRNGETVEDLLSYAWKNWREGTALNLID PTLRDGSRNEMLRCIHIGLLCVQENVANRPTMATVVLMLNSFSISLPLPSQPAFFIHS NIDSDMSSSRGYNSRMSESQQSKSESIPLSMNEASITELYPR" CDS complement(join(25788937..25789284,25789423..25789573, 25789745..25789982,25790165..25790365,25790864..25790965, 25792207..25792642)) /locus_tag="TCM_030099" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030102t1" /codon_start=1 /product="Cysteine-rich RLK 29, putative isoform 2" /protein_id="EOY28558.1" /db_xref="Phytozome:POPTR_0004s02560.1" /db_xref="TAIR:AT4G05200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1T8" /translation="MLRYANRDILGEMEVSPSACLLNTQDVTNADQFNQALENLLNNL SSQAAAEGPLRKYAADNLTAGVFQTVYTMVQCTPDLSEQECGECLTVVKNGIGNCCLG KRGCRVLRPSCFLRFESSPFFETPVPLPSPPPSPTTPPPPATGGKGNNTTRTIIIVVA SVVGVVILITISICIFLRATDGQEVAVKRLSTDSGQGEVEFKNEVLLVAKLQHRNLVR LLGFCLEGRERLLIYEFVPNASLDHFIFDQVKRIQLDWERRYKIIGGIARGLLYLHED SRLRIIHRDLKASNILLDAEMIPKIADFGMARLFVRDETQGNTSRIVGTYGYMAPEYA MHGQFSVKSDVFSFGVIILEIISGQKNNCFRNGETVEDLLSYAWKNWREGTALNLIDP TLRDGSRNEMLRCIHIGLLCVQENVANRPTMATVVLMLNSFSISLPLPSQPAFFIHSN IDSDMSSSRGYNSRMSESQQSKSESIPLSMNEASITELYPR" gene complement(25794521..25797594) /locus_tag="TCM_030100" /note="dbxref CacaoGD:Thecc1EG030100" mRNA complement(join(25794521..25795038,25795123..25795273, 25795385..25795622,25795722..25795932,25796034..25796173, 25796327..25796455,25796746..25797594)) /locus_tag="TCM_030100" /product="Cysteine-rich RLK 29, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0499s00200.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030102t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s02560.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1684t10" CDS complement(join(25794700..25795038,25795123..25795273, 25795385..25795622,25795722..25795932,25796034..25796173, 25796327..25796455,25796746..25797580)) /locus_tag="TCM_030100" /note="paralog of Thecc1EG030102t1" /codon_start=1 /product="Cysteine-rich RLK 29, putative" /protein_id="EOY28559.1" /db_xref="Phytozome:POPTR_0004s02560.1" /db_xref="TAIR:AT4G05200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1T8" /translation="MDSSRQFFFSSLIVTFLLSLTVAQQEPLFHFCLDTSGNFTRNST YEANLNRQLSSFSSNTANDYGFYNMSSGQGSERANVIALCRGDVNSGDCLHCINNATP ELRNRCPNQKEAIIWYDFCMLRYTNRSIFGIMETEPSFYMWNLNNVTDVDAFNQALSA LMNNLRTNASSGTSLGNFATGSRQVTAFQTIYALVQCTPDLTEPECSSCLSQAIEFIP TCCDRKQGGRVIGPSCNFRFEIERFYNLTTADTPSLLSPPPPTSVSPLSPPPSNDTTS STGKKSNSSRAIIIITIAAVAFAVLLISSCIFFILRVRKSKVKAETREAAEAVDEIGS AESLQYEFSTIRAATDDFSDANKLGQGGFGAVYKGTLADGELIAVKRLSTDSGQGDLE FKNEVRLVAKLQHRNLVRLRGFCLDGNERLLIYEFVPNASLDQFLFDPVKHAYLDWER RYKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDAEMNPKISDFGMARLCALDQTQ GATSRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLLLEILCGQKNSAFRVGENVEDLL SYAWRNWKDGTPLNLVDPILREASRTEVMRCIHIGLLCVQENAAQRPNMASVVLMLTS YSVTLPLPAEPAFFMHSNTQSDMLWLNSGATESTQSRNDAAAVSENEVSITELHPR" gene 25797865..25802756 /locus_tag="TCM_030101" /note="dbxref CacaoGD:Thecc1EG030101" mRNA join(25797865..25798124,25798261..25798344, 25799073..25799871,25799964..25800089,25800342..25800463, 25800921..25801131,25801206..25801443,25801597..25801747, 25801841..25802756) /locus_tag="TCM_030101" /product="Cysteine-rich RLK 30, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g39980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030104t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s03220.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS join(25798023..25798124,25798261..25798344, 25799073..25799871,25799964..25800089,25800342..25800463, 25800921..25801131,25801206..25801443,25801597..25801747, 25801841..25802170) /locus_tag="TCM_030101" /note="paralog of Thecc1EG030104t1" /codon_start=1 /product="Cysteine-rich RLK 30, putative" /protein_id="EOY28560.1" /db_xref="Phytozome:POPTR_0011s03220.1" /db_xref="TAIR:AT4G23190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYJ6" /translation="MKNKLIPRTKMMQADHIPSAKSTLFIVDNDSDSDEISRILNHVR LATFRTPETGKKGHRNGQDRKMWVKALVCLLPNLLIGMSLATALRCYDTGNFTTNSTY AMNRDLILASLPANVSANGGFFTATIGQEPNKVYALGLCRGDSSSEDCFSYLDSTTRD LIAKCPNQKEAISWGGDPPSMVRYADRSFFRILELEPYDTVPNVYDINSNLTQFYHVW ESLMVSVMGNASMGSSRLKYSTGQAESADSQTIYALMQCTPDLSQSDCETCLKESVVL YRSKFNRKQGGYVQRPNCWFKWDLSLFYVLNASTVAPPGSPPPPTTNITITKEGGGIS SQTVVIIVVPIMVFVAVVLIASAILLKRRKPKQENETADEKSCEESFQFDFNAVRVAT DNFSPAKKIGKGGFGVVYKGKLPDGQVVAVKRLSGNSGQGEQEFKNEVLLMVKLQHKN LVCLLGFSWERKERILIYEFVPNSSLDNFIFDPIKRLLLNWEKRYKIIKGIARGILYL HQDSQYRIIHRDLKAANILLDAEINPKISDFGMAKLFVVDQTQADTKRIVGTYGYMAP EYARKGHFSVKSDVYSFGVLVLEIVSGKSINGFRDEETGVNLITHAWKNWKEGTPLKL IDDILLDDSRSEMLRCIHLGLLCVQENIAHRPTMDSVVLMLSSSSISLRAPSRPAFLL QSSKVPEGRPESSRSSQSKSAEVQVTVNEASFSELDPR" gene complement(25802476..25812210) /locus_tag="TCM_030102" /note="dbxref CacaoGD:Thecc1EG030102" mRNA complement(join(25802476..25803738,25803878..25804028, 25804196..25804433,25804602..25804812,25804927..25805048, 25805276..25805401,25806649..25807483,25809114..25809422, 25809532..25809682,25809836..25810073,25810173..25810383, 25810486..25810625,25810777..25810905,25811200..25812210)) /locus_tag="TCM_030102" /product="Cysteine-rich RLK 29" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005158001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030100t1" /inference="similar to AA sequence:ricco:29842.m003676" /note="quality class is strong, express is medium, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8284t2" CDS complement(join(25803391..25803738,25803878..25804028, 25804196..25804433,25804602..25804812,25804927..25805048, 25805276..25805401,25806649..25807483,25809114..25809422, 25809532..25809682,25809836..25810073,25810173..25810383, 25810486..25810625,25810777..25810905,25811200..25812040)) /locus_tag="TCM_030102" /note="dbxref ricco:29842.m003676; paralog of Thecc1EG030100t1" /codon_start=1 /product="Cysteine-rich RLK 29" /protein_id="EOY28561.1" /db_xref="TAIR:AT4G38830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H843" /translation="MDSSRQFFFSSLIVTFLLSLTVTQQEPLYNFCLDTSGNFTRNST YEANLNRLLSSFSSNTANDNGFYNMSSGQGSETANVIALCRGDVNSGDCLDCINNATT ELRNLCPNQKEAIIWYDFCMLRYTNRSIFGVAETNPSFYMWNPNNVTDVDAFNQSLSA LMNNLRTNASSGTSLRKFATGSRQVTAFQTIYALVQCTPDLTEPECSSCLSQAIEFIP TCCDRKQGGRVIGPSCNFRFEIERFYNLTIADTPSLLSPPPPPPTPVSPLSPPPSNDT TSSTGKKSNSSRTIIIITIAAVAFAVLLISSYIFFFLRVRKSKVKAETREAAEAVDEI GSAESLQYDFSTIRAATDDFSDANKLGQGGFGAVYKGTLASGELIAVKRLSTDSGQGD LEFKNEVQLVAKLQHRNLVRLQGFCLEGNERLLIYEFVPNASLDQFLFDPVKCAHLDW ERRNKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDAEMNPKISDFGMARLCALDQ TQGATSRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLLLEILCGKKNSAFRVGENVED LLSYAWRNWKDGTALKLVDPILREASRTEVMRCIHIGLLCVQENAAQRPNMASVVLML TSYSVTLPLPSEPAFFMHSNTQSDMLWLNSGATESTQSRNEVAAVSENEIKIFTEERD AIAMGFSRLLLFFYSVVLFFATLTLGADPLFQSDCANSAGNYTANSTYQTNLDSIFSQ VTSLTEFNYGFYNLSAGQNPNKVNAIALCRGDRNQDECNSCLNDTVSELRQRCPLSKE VVGWSEFCTLRYANRNILGEMEISPGSCLLNTQNVTNANQFNQALSDLLNNLSSLAAA AGPLRKYAAGNSEVRLFQTVYALVQCTPDLSEEECDECLNVAKEGIGSCCEGKMGCRV LRPSCFLRFESSQFYQTPVPLPSPPPSPTSSPPPSTGEKGNNTTRTIIIVVASVVGVV VLITISICIFLRARKNWEKVETVDEIIRVESLQFDFATIRIATDNFSDANKLGQGGFG AVYKGLLSDGQEVAVKRLSTDSGQGEVEFKNEVLLVAKLQHRNLVRLLGFCLEGRERL LIYEFVPNTSLDHFIFDQVKRAQLDWERRYKIIGGIARGLLYLHEDSRLRIIHRDLKA SNVLLDAEMAPKIADFGMARLFIRDETQGNTSRIVGTFGYMAPEYAMHGQFSVKSDVF SFGVIILEIISGQKNNCFRNGESVEDLLSCAWKNWREGTALNIIDPTLRDGSRNEMLR CIHIGLLCVQENVANRPTMATVVLMLNSISISLPLPSQPAFFMHSNIDSDMSSSWDYN SRVSESKPSKRESIPLSQNEASITELYPR" mobile_element 25813451..25813817 /note="source:CACAO_Again_on_E210_scaffold_9 1 376" /mobile_element_type="transposon:TIR/hAT" mobile_element 25813791..25814774 /note="source:CACAO_Again_on_E210_scaffold_9 349 1240" /mobile_element_type="transposon:TIR/hAT" gene 25816022..25819439 /locus_tag="TCM_030104" /note="dbxref CacaoGD:Thecc1EG030104" mRNA join(25816022..25816952,25817044..25817169, 25817388..25817521,25817945..25818155,25818230..25818467, 25818621..25818771,25818865..25819439) /locus_tag="TCM_030104" /product="Cysteine-rich RLK 30, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s03220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030101t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s03220.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc2036t2" CDS join(25816163..25816952,25817044..25817169, 25817388..25817521,25817945..25818155,25818230..25818467, 25818621..25818771,25818865..25819194) /locus_tag="TCM_030104" /note="paralog of Thecc1EG030101t1" /codon_start=1 /product="Cysteine-rich RLK 30, putative" /protein_id="EOY28562.1" /db_xref="Phytozome:POPTR_0011s03220.1" /db_xref="TAIR:AT4G23190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYJ6" /translation="MWVKALVCLLSHLLIGMSLATALRCYDTGNFTTNSTYGINRDLI LASLPANVSANGGFFTATIGKEPNKVYALGLCRGDSTSENCFSSLNSTTQDLIAKCPN QKEAISWGGDPPSMVRYANRSFFGILELDPSEAGTNVNDIKSNLTQFNTVWESLMDSV VRNASMGSFRLKYSTGEADNTVFQKIHALMQCTPDLSQSDCDSCLRESVSAYQRMFYG KQGGYVQRPNCWFRWDLYPFYVSNATTTAPSLSPPPPPTNTTITKEDGGISSQTVVII VVPIMVLVAVVLIASVILLKRRKPKQENENEKSAADEKRCEESFQFDFNAIRVATDDF SPATQIGKGGFGFVYKGKLPDGQVVAVKRLSGNSGQGEQEFKNEVLLMVKLQHKNLVR LLGFSLEKKERIIIYEFVPNSSLDNFIFDPIKRLLLNWEKRYKIIKGIARGILYLHQD SQYRIIHRDLKAANILLDAEMNPKISDFGMAKLFVVDQTQADTRRIIGTYGYMAPEYA RKGHFSVKSDVYSFGVLVLEIVSGKSINGFRDEETGVSLITHAWKNWNEGTPWKLIDD ILLDDSRSEMLRCIHLGLLCVQENIAHRPTMDSVVLMLSSSSISLRAPSRPAFLLQSS KVPEGRPESSRSSQSKSAEVQVTVNEASFSELDPR" gene 25822423..25825891 /locus_tag="TCM_030105" /note="dbxref CacaoGD:Thecc1EG030105" mRNA join(25822423..25823481,25823570..25823695, 25823810..25823925,25824083..25824293,25824403..25824637, 25824735..25824879,25824963..25825891) /locus_tag="TCM_030105" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 14, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0138s00230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017108t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s02560.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8161t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8161t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc955t15_C2" mRNA join(25822423..25823433,25823570..25823695, 25823810..25823925,25824083..25824293,25824403..25824637, 25824735..25824879,25824963..25825891) /locus_tag="TCM_030105" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 14, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0138s00230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017108t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s03220.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8161t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8161t1" CDS join(25822677..25823481,25823570..25823695, 25823810..25823925,25824083..25824293,25824403..25824637, 25824735..25824879,25824963..25825289) /locus_tag="TCM_030105" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG017108t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 14, putative isoform 2" /protein_id="EOY28564.1" /db_xref="Phytozome:POPTR_0004s02560.1" /db_xref="TAIR:AT4G23220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYJ5" /translation="MYVKNLVFVLCLIVSGIGLTTAQTCLETGNFTTNSTFGRNRDLI LTSLPTNVSENVGFFNATIGQEPNKVYAQALCRGDLSAEDCLTYVNFTAQQLITNCTN QKEGFSWDGDIPCLVRYSNQSFFGVLALDPIQEAINPNDINDAASNLTQFFQVWGGLM EAVATKASMGSSRLKYATGVADEIQALMQCTPDLSQSDCLTCLRTLVRRYTACCRTYQ GGYVETPSCRMRWDLYTFFAPTTDTVRISLSPPPGKSPPDSTKNTTATIKDNGGDQSR TIVIIVVPIIIFIATVVLICVRLQKRRKSKKEMKSDDDGLESLQFHFKAVREATDNFS ENNMLGQGGFGAVYKGRLQDGREIAVKRLHYESGQGKMEFKNEVLLMAGLQHRNLVRL QGFCLERKERLLIFEFMPNSSLDHFLFDPVKPRLDWDKRFKIIAGIARGLLYLHEDSR YRIIHRDLKAANILLDADMNPKISDFGMARLFAADQTRDRTRRIAGTFGYMAPEYVKH GKFSLKSDVYSFGVLILEIICGDKISNFRKDGVDLLTYAWRNWREGRALNLVEPFLRD GSGSRSEMTRCIHIGLLCVQENYASRPTMNSAVLMLSDSSMSIPMPSTPAFMLSASTV QSEASSSSTTDHNSDQCSRNEVSITTLDPR" CDS join(25822677..25823433,25823570..25823695, 25823810..25823925,25824083..25824293,25824403..25824637, 25824735..25824879,25824963..25825289) /locus_tag="TCM_030105" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG017108t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 14, putative isoform 1" /protein_id="EOY28563.1" /db_xref="Phytozome:POPTR_0011s03220.1" /db_xref="TAIR:AT4G23220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYJ5" /translation="MYVKNLVFVLCLIVSGIGLTTAQTCLETGNFTTNSTFGRNRDLI LTSLPTNVSENVGFFNATIGQEPNKVYAQALCRGDLSAEDCLTYVNFTAQQLITNCTN QKEGFSWDGDIPCLVRYSNQSFFGVLALDPIQEAINPNDINDAASNLTQFFQVWGGLM EAVATKASMGSSRLKYATGVADEIQALMQCTPDLSQSDCLTCLRTLVRRYTACCRTYQ GGYVETPSCRMRWDLYTFFAPTTDTVRISLSPPPDNGGDQSRTIVIIVVPIIIFIATV VLICVRLQKRRKSKKEMKSDDDGLESLQFHFKAVREATDNFSENNMLGQGGFGAVYKG RLQDGREIAVKRLHYESGQGKMEFKNEVLLMAGLQHRNLVRLQGFCLERKERLLIFEF MPNSSLDHFLFDPVKPRLDWDKRFKIIAGIARGLLYLHEDSRYRIIHRDLKAANILLD ADMNPKISDFGMARLFAADQTRDRTRRIAGTFGYMAPEYVKHGKFSLKSDVYSFGVLI LEIICGDKISNFRKDGVDLLTYAWRNWREGRALNLVEPFLRDGSGSRSEMTRCIHIGL LCVQENYASRPTMNSAVLMLSDSSMSIPMPSTPAFMLSASTVQSEASSSSTTDHNSDQ CSRNEVSITTLDPR" gene complement(25824612..25828948) /locus_tag="TCM_030107" /note="dbxref CacaoGD:Thecc1EG030107" mRNA complement(join(25824612..25824637,25824818..25824880, 25824964..25825891,25825978..25826128,25826227..25826464, 25826631..25826841,25827106..25827227,25827316..25827459, 25827604..25828948)) /locus_tag="TCM_030107" /product="Cysteine-rich protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01015799001.2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400026615.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030113t1" /inference="similar to AA sequence:ricco:29842.m003666" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc940t1; alternateUTRof:Thecc1EG030107t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc940t5; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc970t7" mRNA complement(join(25824864..25825891,25825978..25826128, 25826227..25826464,25826631..25826841,25827106..25827227, 25827316..25827459,25827604..25828948)) /locus_tag="TCM_030107" /product="Cysteine-rich protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01015799001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030113t1" /inference="similar to AA sequence:ricco:29842.m003666" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc940t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc940t5" CDS complement(join(25825568..25825891,25825978..25826128, 25826227..25826464,25826631..25826841,25827106..25827227, 25827316..25827459,25827604..25828432)) /locus_tag="TCM_030107" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003666; paralog of Thecc1EG030113t1" /codon_start=1 /product="Cysteine-rich protein, putative isoform 1" /protein_id="EOY28565.1" /db_xref="TAIR:AT4G05200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6ZRN5" /translation="MIPKSEEKLIITMLSFNIYKTFVIYFLLSLLKLMLTCQGAPIFL YHDCTNTTSFSTNGTFQRNLNLLLSSLSSNSTRDNRFYNLTVGSDPENIVYGLFVCRG DATDDLCRDCVETATKDIVQRCPTDKAAIITYEECMLRYSNQNFFGKLETKPALQLVN NLNISQQEQFLEALERTTRNVTAKIANDRSGRRFATVESPFTSKQKIYALGQCTQDLS VADCNKCLEAAFAYFIPSCCGVREGGRVIFPSCNFRYELYPFYSVAESPTSTAGPGSK GKRNLSPGKIIGIAAATVSVAFVVLLIAAFCCLTRKRKKNQHAMEEQTAANDMTTVES LQFDLGTIAAATNKFSHVNKLGEGGFGQVYKGVLRNGQEIAVKRLSGRSGQGDKQFKN EVAVVAKLQHRNLVRLLGFCLERGERLLIFEFVPNKSLDCFLFGTQNRGELDWPTRYN IIKGIARGMLYLHEDSQPRIIHRDLKVSNVLLDREMNPKISDFGMARIFGVDEQQGST SRIVGTYGYMSPEYAMHGQFSVKSDVYSFGVSVLEIISGKKNNSFHQVDGFEDLLSYS WKLWSDGAALELLDPLLRESYSEDEVIRCMQIGLLCVQEDPAKRPTMTTIVLMLNSQI LTLEAPQRPASFFRYKDETSIPTNEGQSPLLSMPSSINETSISETYPR" CDS complement(join(25825568..25825891,25825978..25826128, 25826227..25826464,25826631..25826841,25827106..25827227, 25827316..25827459,25827604..25828432)) /locus_tag="TCM_030107" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003666; paralog of Thecc1EG030113t1" /codon_start=1 /product="Cysteine-rich protein, putative isoform 1" /protein_id="EOY28566.1" /db_xref="TAIR:AT4G05200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6ZRN5" /translation="MIPKSEEKLIITMLSFNIYKTFVIYFLLSLLKLMLTCQGAPIFL YHDCTNTTSFSTNGTFQRNLNLLLSSLSSNSTRDNRFYNLTVGSDPENIVYGLFVCRG DATDDLCRDCVETATKDIVQRCPTDKAAIITYEECMLRYSNQNFFGKLETKPALQLVN NLNISQQEQFLEALERTTRNVTAKIANDRSGRRFATVESPFTSKQKIYALGQCTQDLS VADCNKCLEAAFAYFIPSCCGVREGGRVIFPSCNFRYELYPFYSVAESPTSTAGPGSK GKRNLSPGKIIGIAAATVSVAFVVLLIAAFCCLTRKRKKNQHAMEEQTAANDMTTVES LQFDLGTIAAATNKFSHVNKLGEGGFGQVYKGVLRNGQEIAVKRLSGRSGQGDKQFKN EVAVVAKLQHRNLVRLLGFCLERGERLLIFEFVPNKSLDCFLFGTQNRGELDWPTRYN IIKGIARGMLYLHEDSQPRIIHRDLKVSNVLLDREMNPKISDFGMARIFGVDEQQGST SRIVGTYGYMSPEYAMHGQFSVKSDVYSFGVSVLEIISGKKNNSFHQVDGFEDLLSYS WKLWSDGAALELLDPLLRESYSEDEVIRCMQIGLLCVQEDPAKRPTMTTIVLMLNSQI LTLEAPQRPASFFRYKDETSIPTNEGQSPLLSMPSSINETSISETYPR" gene complement(25829933..25830893) /locus_tag="TCM_030108" /note="dbxref CacaoGD:Thecc1EG030108" mRNA complement(join(25829933..25830373,25830460..25830610, 25830726..25830893)) /locus_tag="TCM_030108" /product="Cysteine-rich protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030115t1" /inference="similar to AA sequence:Phytozome:GSVIVT01006430001" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8075t1" CDS complement(join(25830041..25830373,25830460..25830610, 25830726..25830814)) /locus_tag="TCM_030108" /note="paralog of Thecc1EG030115t1" /codon_start=1 /product="Cysteine-rich protein, putative" /protein_id="EOY28567.1" /db_xref="Phytozome:GSVIVT01006430001" /db_xref="TAIR:AT4G23180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6ZRN5" /translation="MNPKISDFGMARIVEENQNLEQTKKIVGTYGYISPEYALHGLFS FKSDVYSFGVLTLEIVHGKTNTSFFNSERAENLLSHAWRWWKQRTPLEMMDPTLRDSY VSDEVIRCIQVGLLCVQQNPNARPMMAKIVSMLSSSAVSVPPPQQPAFFFGPQTAGST SIVELGFDQPTSKSKCTSINEASITEFYPR" gene complement(25833600..25837902) /locus_tag="TCM_030110" /note="dbxref CacaoGD:Thecc1EG030110" mRNA complement(join(25833600..25834720,25834805..25834955, 25835363..25835600,25835756..25835966,25836136..25836257, 25836349..25836486,25837079..25837902)) /locus_tag="TCM_030110" /product="Cysteine-rich protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01015799001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030113t1" /inference="similar to AA sequence:ricco:29842.m003668" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc776t7" CDS complement(join(25834385..25834720,25834805..25834955, 25835363..25835600,25835756..25835966,25836136..25836257, 25836349..25836486,25837079..25837877)) /locus_tag="TCM_030110" /note="dbxref ricco:29842.m003668; paralog of Thecc1EG030113t1" /codon_start=1 /product="Cysteine-rich protein, putative" /protein_id="EOY28568.1" /db_xref="TAIR:AT4G05200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6ZRN5" /translation="MVSLNTSLVFMLLFTLLSFSSEAAPTYSSHYCDNSTSFTPNSTY QANIKALLFSLSSNISSGKNGFYNTTAGQDPNLVYGTFLCRGDVSANLCQDCVASASS EITRRCLMEKMGVIWYDECTVRYSDQNIFSTVREVPGMDKSSSASITDKDRFNQLLVS VMKILENRAAYEDKSGKKFAAGEANFTSSQTLYSLVQCTPDLTDALCFRCLQSAIATL PMCCDGKQGGRVLLPSCNIRYETFPFYHLNGTGNTVLVPLPSSPNSTKGQRKISSPII IAIVVPVVISLVLLALALFLLRRRASKKYNALPEDKVAEETTASESLKFNLATIEAAT NNFSSDNKIGEGGFGEVYKGKLSNGQEVAVKRLSKSSVQGAEQFKNEVVLLAKLEHRN LVRLLGFCLDGEEKLLIYEYVPNKSLDYFLFDPEKQGNLDWSRRYKIIGGIARGLLYL HEDSRLRIIHRDLKAGNVLLDEDMNAKISDFGTARIFGVDQTQANTRRIVGTFGYMSP EYAMRGKFSMKSDVFSFGVLILEIISGRKNSSFYQSDGADDLLSYSWKHWTNETPLEL LDSNLRANCSRNEVVRCIHIGLLCVQEDPANRPTMTRVGLMLDSYSVSLPLPQKPAFF LRSRNELSPQGKGLKSSDQSSSKSTTLSINEVSVTELEPR" gene complement(25838912..25842020) /locus_tag="TCM_030113" /note="dbxref CacaoGD:Thecc1EG030113" mRNA complement(join(25838912..25839427,25839509..25839659, 25839834..25840071,25840182..25840267,25840348..25840391, 25840465..25840586,25840696..25840830,25840944..25842020)) /locus_tag="TCM_030113" /product="Cysteine-rich protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003666.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030123t1" /inference="similar to AA sequence:ricco:29842.m003666" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10945t00001" mRNA complement(join(25838982..25839427,25839509..25839659, 25839834..25840071,25840182..25840390)) /locus_tag="TCM_030113" /product="Cysteine-rich protein, putative isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030107t2" /inference="similar to AA sequence:Phytozome:GSVIVT01036853001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1158t48" CDS complement(join(25839095..25839427,25839509..25839659, 25839834..25840071,25840182..25840267,25840348..25840391, 25840465..25840586,25840696..25840830,25840944..25841751)) /locus_tag="TCM_030113" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003666; paralog of Thecc1EG030123t1" /codon_start=1 /product="Cysteine-rich protein, putative isoform 1" /protein_id="EOY28569.1" /db_xref="TAIR:AT4G05200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6ZRN5" /translation="MVSIEISVTPLFYIFLCLLSLHSAAAAEFLSSDCSPNTTTYTQN STYRRNLNSLLSSLQSNSTRKNGFYNLTVGRDPPDIVYGLFLCRGDLTQDACQDCAST AAGEILQHCPIQKTALVYYAECTLRYSNRSFFSVWQRDPTLQLLNTGNISQSDRFMEL LGNTMNEIATRAANDQSGKKFATEEANFTSFQTLYTLAQCTPDLSVSNCDTCLQTAIA YLPSCCFGRPGGRVLFPSCNVRYELYPFYNVTAHPRSQTPVTPSPPAPPSKEKNKISS TIIIAIVVPVVVSVVLFAAGFCLLTRKRKKYDAVEQENAANEITTVESLLFDFATIEA ATDKFSVDNKLGEGGFGPVYKGKLPSGQEIAVKRRGLLGFCLEGEEKLLIYEFVPNKS LDYFLFGTEKQGQLNWIKRYKIIGGIARGILYLHEDSRLKIIHRDLKTSNILLDEDMN AKISDFGMARIFGVDQSEGNTSRVVGTYGYMPPEYAMHGQFSVKSDVYSYGVIILEII TGKKSNNFQSTDEADDLLNYAWKHWNSGTPLELLDPSLRSSYSRNEVIRCIHIGLLCV QEDPAERPTMAAIVLMLNSYSITLQAPRPPATFLIPRSESNFSINEEGSDQSASKSIP FSVNEASISDLYPR" CDS complement(join(25839095..25839427,25839509..25839659, 25839834..25839922)) /locus_tag="TCM_030113" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030107t2" /codon_start=1 /product="Cysteine-rich protein, putative isoform 2" /protein_id="EOY28570.1" /db_xref="Phytozome:GSVIVT01036853001" /db_xref="TAIR:AT4G05200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6ZRN5" /translation="MNAKISDFGMARIFGVDQSEGNTSRVVGTYGYMPPEYAMHGQFS VKSDVYSYGVIILEIITGKKSNNFQSTDEADDLLNYAWKHWNSGTPLELLDPSLRSSY SRNEVIRCIHIGLLCVQEDPAERPTMAAIVLMLNSYSITLQAPRPPATFLIPRSESNF SINEEGSDQSASKSIPFSVNEASISDLYPR" gene complement(25842048..25846851) /locus_tag="TCM_030115" /note="dbxref CacaoGD:Thecc1EG030115" mRNA complement(join(25842048..25843124,25843208..25843358, 25843517..25843754,25843984..25844194,25844291..25844442, 25845706..25846851)) /locus_tag="TCM_030115" /product="Cysteine-rich RLK 25" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030119t1" /inference="similar to AA sequence:ricco:29842.m003668" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1078t17" CDS complement(join(25842798..25843124,25843208..25843358, 25843517..25843754,25843984..25844194,25844291..25844442, 25845706..25846303)) /locus_tag="TCM_030115" /note="dbxref ricco:29842.m003668; paralog of Thecc1EG030119t1" /codon_start=1 /product="Cysteine-rich RLK 25" /protein_id="EOY28571.1" /db_xref="TAIR:AT4G05200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1T5" /translation="MAYGLFRCRGEVGPKICQDCINLAAAGVAQRCSNQTWAIIRYDE CMLRYSNQSIFYAMAESPKINMLYNNDVMEPERFNRLVATLMQDIATRASNASMGAKK FATKEETFTVFQTIYSLAQRTPDISREDCYRCLQKAIADLPNCCGGKAGAFALYPSCT VQHQVTPFYDTSNETIAAPPPASPAPPLVFPPPPPPTAPGKSKARNMQSLQFDLSIVE AATDKFAEVNKIGAGGFGSVYKVRNEAYHDYRGTLPDGQEIAVKRLSTSSGQGDEEFQ NEVQLVAKLQHRNLVKLFGYCLEKGERMLIYEFVPNKSLDYFIFDPENQRQLDWSKRY KIIKGIARGLLYLHSDSHLKIIHRDLKASNILLDEDMMPKISDFGMARIVGENRSVEC TKRIVGTYGYMSPEYAIHGRFSEKSDVFSFGILILEIICGKMNTSFCHSQYADNLLTY VWRHWKNGTPIELMDSTLQDSYASNEVRRCIQIGLLCVQEDPDTRPTMARVVLMLSSS SVTLPAPQKTAFFFGTTTGRQFSEQKSDPSKSTSSSATVNEASITELFPR" mobile_element 25844776..25845095 /note="source:INTACT790_F336_scaffold_10-int 6381 6704" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25845051..25845127) /note="source:scaffold_7_CACTA_0779 2931 3006" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25847653..25848078) /note="source:CACAO_M_E44260_F10_scaffold_5 3134 3563" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25848449..25848531) /note="source:INTACT76_F135_scaffold_2-int 453 533" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25848683..25848767 /note="source:CACAO_M_S_E16721_F36_scaffold_2 22064 22161" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(25849307..25851581) /locus_tag="TCM_030118" /note="dbxref CacaoGD:Thecc1EG030118" mRNA complement(join(25849307..25849846,25850197..25851581)) /locus_tag="TCM_030118" /product="ATP binding protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036854001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030110t1" /inference="similar to AA sequence:ricco:29842.m003666" /note="quality class is strong-expresste, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01191t00001" CDS complement(join(25849803..25849846,25850197..25850995)) /locus_tag="TCM_030118" /note="dbxref ricco:29842.m003666; paralog of Thecc1EG030110t1" /codon_start=1 /product="ATP binding protein, putative" /protein_id="EOY28572.1" /db_xref="TAIR:AT4G05200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXS9" /translation="MASLNTYLIFMLLFTLLSFSSEATPTYSAHYCDNSTSFTPNSTY QANIKTLLSSLSSNTRSSKNGFYNTTAGQDPNLVYGTFLCRGDVSANLCQHCVANAIN EIAQRCRMEKTGVIWYDECTVQYSDQNIFSISRQVPGMDNSTSASITDKDRFNQLLVS VMKILENRAAYEDKSGKRFAAGEANFTSSQTLYSLVQCTPDLTNELCFRCLQSAIATL PMCCDGKQGGRVLLPSCNIRYEMFPFYNLNGTGSTVLVPSPSSPNSTKAILCSVVLLF VVRA" gene complement(25851985..25857081) /locus_tag="TCM_030119" /note="dbxref CacaoGD:Thecc1EG030119" mRNA complement(join(25851985..25852466,25852550..25852700, 25852859..25853096,25853231..25853441,25853568..25853689, 25853824..25853955,25854422..25855179,25855788..25855851, 25856063..25856435,25856523..25857081)) /locus_tag="TCM_030119" /product="Cysteine-rich RLK 25" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400026623.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030115t1" /inference="similar to AA sequence:Phytozome:Glyma10g39980.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1295t8" CDS complement(join(25852140..25852466,25852550..25852700, 25852859..25853096,25853231..25853441,25853568..25853689, 25853824..25853955,25854422..25855179,25855788..25855851, 25856063..25856435,25856523..25856858)) /locus_tag="TCM_030119" /note="paralog of Thecc1EG030115t1" /codon_start=1 /product="Cysteine-rich RLK 25" /protein_id="EOY28573.1" /db_xref="Phytozome:Glyma10g39980.1" /db_xref="TAIR:AT4G05200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6ZRN5" /translation="MLVYKSFITLFFLSLFSFTIKAQPAYVVHDCSNTITFPTNGTYQ ADLNHLLSSLSSNATRGNRFYNTTSGRNSDMVYGLFLCRGDVSNSSCGECVSTATKDI TQRCPVEKIANPRNVADQERFNQILADTMDAAATLAVSARSDFKYFATREASISGFQT LYSLVQCTPDLSSGDCNACLRGAIAALPDCCSGKQGARVLKPSCNIRYEVSPFYNQTT VAAPAAPSLLTPPPPAASDMHEPIYPTTLKSKGGGGQLNSFTSLGDPTYLYHFCSNVT TFTRNSVYITNINNLFSYLTSNATVLDGFYKTTAGQNPNMIHGLFLCRGDVLPEFCQY CIELAATDVAQRCPNQTWAIIWYDECMLRYSNQSIVDSTPERPKVNLRNNIDVMEPDR FNQQVATLMKNIATRASNASLGAKKFATEEVRLKAFLIVYSLAQCTPDISSGDCCRCL ENAIADLLKCCSGKTGVFALYPSCTVQYQLAPFYNSSNQTIAAPPPASPALPLLLSPP PPGRKGMSSQRVIKIVVPTVGFLVFSTLCVLGWKARKKLIVQKMQSGKSKARNMQSLQ FDLSIVEAATNKFAEVNKIGAGGFGSVYKGTLPDGQEIAVKRLSTSSGQGDEEFQNEV QLVAKLQHRNLVKLYGYCLEAKERMLIYEFVPNRSLDYFIFDPEKQRQLDWPTRYKII KGIARGLLYLHSDSHLKIVHRDLKASNILLDEDITPKISDFGMARIVGENKSVECTKR IVGTYGYMSPEYAMHGRFSEKSDVFSFGILILEIICAKMNTSFCHSQYTDNLLTHVWR HWKNGTPIDLMDSTLQDSYVSNEVLRCIQIGLLCVQEDPGARPTMARVVLMLSSSSVT LPSPQKTAFFFGTITGRKFSEQKSDRSKSTSSSATANEASISELFAR" mobile_element 25854280..25854319 /note="source:INTACT515_F237_scaffold_9-int 5437 5475" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(25857724..25860081) /locus_tag="TCM_030121" /note="dbxref CacaoGD:Thecc1EG030121" mRNA complement(join(25857724..25858107,25858187..25858337, 25858770..25859007,25859125..25859335,25859484..25859692, 25859808..25860081)) /locus_tag="TCM_030121" /product="Cysteine-rich RLK 10" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s09070.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030123t1" /inference="similar to AA sequence:ricco:29842.m003661" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1192t15" CDS complement(join(25857799..25858107,25858187..25858337, 25858770..25859007,25859125..25859335,25859484..25859692, 25859808..25859943)) /locus_tag="TCM_030121" /note="dbxref ricco:29842.m003661; paralog of Thecc1EG030123t1" /codon_start=1 /product="Cysteine-rich RLK 10" /protein_id="EOY28574.1" /db_xref="TAIR:AT4G21390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXS9" /translation="MCPYSEKEKQKKSNRIALGASLSATLGLALFSACGFFIWRRRNI QEDRENSQEVQLLDLVEGRIRYEHTSENPSGEREARSQEFPSIQLHILHAATNHFCDE NKLGEGGFGPVYKGALPDGKEIAVKRLSRTSGQGLLEFKNEVMLIARLQHRNLVRLLG CCLEKNEKLLVYEFMPNRSLDVFLFDSSMATQLSWLKRFSIIKGIARGIMYLHEDSRL KIIHRDLKASNVLLDHEMNPKISDFGMARIFDGDQNQANTNRVVGTYGYMAPEYAMEG LFSIKSDVFSFGVLLLEIISGKRNNGFHLSEHGESLLTFAWKLWSKGQGMELIDQLLV QSCVAAEVLKCIHIGLLCVQEDPADRPRMTSVIVMLESETITLPRPSVPAFSVGRVVA EPTQPTSNDRICSVNEVTISNLSPR" mobile_element complement(25858590..25858655) /note="source:CACAO_Mariner_E176_scaffold_6 1142 1206" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(25860478..25860552) /note="source:scaffold_7_CACTA_0779 2934 3006" /mobile_element_type="transposon:TIR/CACTA" gene complement(25864248..25869209) /locus_tag="TCM_030123" /note="dbxref CacaoGD:Thecc1EG030123" mRNA complement(join(25864248..25864937,25865015..25865165, 25865981..25866218,25866332..25866542,25866675..25866883, 25866969..25867088,25868284..25869209)) /locus_tag="TCM_030123" /product="Cysteine-rich RLK 10" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s09070.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030139t1" /inference="similar to AA sequence:ricco:29842.m003661" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage" CDS complement(join(25864629..25864937,25865015..25865165, 25865981..25866218,25866332..25866542,25866675..25866883, 25866969..25867088,25868284..25869031)) /locus_tag="TCM_030123" /note="dbxref ricco:29842.m003661; paralog of Thecc1EG030139t1" /codon_start=1 /product="Cysteine-rich RLK 10" /protein_id="EOY28575.1" /db_xref="TAIR:AT4G23180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXS9" /translation="MVSIEISMTPLFYTVLCLLSLCGAAAAAANFLDSNCGPNTTTYT ANSAYQQNLNFLLSSLKSNSTRVSGFYNLTVGRDPPDIVYGLFLCRGDVTQDTCQDCV SAAAGEILQHCPIQKTALVYYDECTLRYSNRSFFSVWQRDPNLQLLNTGNISQSDRFM KLLGNTMHEIATQAANDQSGKKFATEEANFTSFQTLYTLAQCTPDLSVSDCDTCLQTA IGYLLSCCFGRPGGRVLFPSCNVRYEFYRITEEIKRKKSKWIPLGASLSVTLGLALFS ACGFFIWRRRNIQEDKENNQEVQLLDLVGGSIRNEHSSENFSEEKVSRSQEFPSIQFD ILHAATNHFCDENKLGEGGFGPVYKGTLADGKEIAVKRLSRTSGQGLLEFKNEVMLIA RLQHRNLVRLLGCCLEKNEQLLVYEFMPNRSLDVFLFDSSMAAQLSWLKRFNIIKGIA RGIMYLHEDSRLRIIHRDLKVSNVLLDHEMNPKISDFGMARIFDGDQNQANTNRVVGT YGYMAPEYAMEGLFSIKSDVFSFGVLLLEIISGKRNNGFHLSEHGESLLTFAWKLWSK GQGMELIDQLLVQSCVAAEVLKCIHIGLLCVQEDPADRPRMTSVIVMLESETITLPRP AEPAFSVGRVVAEPTEPTSNDRICSVNEVTISNLSPR" gene complement(25864703..25886295) /locus_tag="TCM_030126" /note="dbxref CacaoGD:Thecc1EG030126" mRNA complement(join(25864703..25864738,25880280..25880656, 25880732..25880882,25881165..25881402,25881504..25881714, 25881859..25882067,25882148..25882267,25883529..25884327, 25884468..25884542)) /locus_tag="TCM_030126" /product="Cysteine-rich RLK 10, putative isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030134t1" /inference="similar to AA sequence:ricco:29842.m003661" /note="transcript variant 2; alternatively spliced; quality class is strong, annoterr is 1; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8105t1" gene 25869355..25877884 /locus_tag="TCM_030125" /note="dbxref CacaoGD:Thecc1EG030125" mRNA join(25869355..25869486,25874855..25875189, 25875309..25875572,25875966..25876233,25876494..25876735, 25877122..25877381,25877490..25877884) /locus_tag="TCM_030125" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032892t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage" mobile_element complement(25869397..25869507) /note="source:scaffold_2_CACTA_0252 7223 7333" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25871902..25879973 /note="source:INTACT45_F20_scaffold_6-int 1 8072" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(25875052..25875189,25875309..25875572, 25875966..25876233,25876494..25876735,25877122..25877381, 25877490..25877721) /locus_tag="TCM_030125" /note="paralog of Thecc1EG032892t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28578.1" /translation="MKLLEKEEKIVFGKRFVPDKLMNIPLSPLDMIGIVYAQKRLRIK EVVLKNPSYVKLLSSAGILDVIRITSKLNIRREKRIDVWRAIFARWSTFSHTMTTAWG EFTFTLEDVCVLLELPCIGKDDFHSIKLSEEEMCLWERFGTCAPVPNAYPFASFFMNN PLSRNNYRAWAWHDRLPRGNVLEVMDVTKEFNPRPYVQPINGFGDLEIYYDRHPLQSG RMSSQAFDRVGIHTSRWFAYWMECIEEWGSFIMPLTNPRACLYTLSISNPNVSLRLIS LKKKRNVNEEEDDAPCALTHQTKHVHRNAIRDEVVLDTETILAVEVVLESTPNVEVIH DVGVDTDDVRAIPMTPHASSSPVPKHRDASSASGTQVAHTEQSGKKVDFHGFQVSLEA LAIAHAPLMSTSLEELQQMLQDFDDACNFGFKLECLSDCRSKAKIFLNKSSLKNELED IAVKIALLKKREAEVQK" mRNA complement(join(25877876..25878122,25880149..25880656, 25880732..25880882,25881165..25881402,25881504..25881714, 25881859..25882067,25882148..25882267,25883529..25884325, 25884468..25884564,25886009..25886295)) /locus_tag="TCM_030126" /product="Cysteine-rich RLK 10, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g028240.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030134t1" /inference="similar to AA sequence:ricco:29842.m003661" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8105t1" CDS complement(join(25880348..25880656,25880732..25880882, 25881165..25881402,25881504..25881714,25881859..25882067, 25882148..25882267,25883529..25884327,25884468..25884497)) /locus_tag="TCM_030126" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003661; paralog of Thecc1EG030134t1" /codon_start=1 /product="Cysteine-rich RLK 10, putative isoform 2" /protein_id="EOY28577.1" /db_xref="TAIR:AT4G21410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1I3" /translation="MPSLLLSQQKRSAETMITVFKRILFLIFSFPVLTYLVTLTFAVD PFFQSRCVADTGNYTANSAYERDLNSLFNEISSTTKLNYGFFHSKFGEVNAIALCRGD VKLNDCTSCLNGTVSEMKQRCHRYKEAIGWSEFCMLRYSSRNISKRLEISPGACLLNT RSAVAGNPEEILRVLQVLLDYLRRVAAARGALLKYATGNSSLGAQIWYALVQCTPDLS EQDCNDCLEAATEGSGSCCVGQMGCRVLRPSCNLRFESAKFFDAAPAVPPPQSPQSTK EEDKQKKSVWIPLGASLSATLGLALFSACGFFIWRRRNIQEDNENSQEVQLLDLVQGS ILDEHSSENFNRENVSRSQEFPSIQLDILHVATNYFCNENKLGEGGFGPVYKGTLADG KAIAVKRLSRTSGQGLLEFKNEVMLIAKLQHRNLVRLLGCCLEKNEKLLVYEFMPNRS LDVFLFDSSMAVELSWPKRFSIIKGISRGVMYLHEDSRLRIIHRDLKASNVLLDHEMN PKISDFGMARIFGGDQNQVNTNRVVGTYGYMAPEYAMEGLFSIKSDVFSFGVLLLEII SGKRNNGFHVSERGESLLTFAWKLWSKGQGMELMDQLLVQSCVAAEVLKCIHIGLLCV QEDPADRPSMSSVVVMLGSETITLPRPVEPAFSVGRVVAEPTEPTSNDRNRSINEVTI SNLSPR" CDS complement(join(25880348..25880656,25880732..25880882, 25881165..25881402,25881504..25881714,25881859..25882067, 25882148..25882267,25883529..25884312)) /locus_tag="TCM_030126" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003661; paralog of Thecc1EG030134t1" /codon_start=1 /product="Cysteine-rich RLK 10, putative isoform 1" /protein_id="EOY28576.1" /db_xref="TAIR:AT4G21410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1I3" /translation="MITVFKRILFLIFSFPVLTYLVTLTFAVDPFFQSRCVADTGNYT ANSAYERDLNSLFNEISSTTKLNYGFFHSKFGEVNAIALCRGDVKLNDCTSCLNGTVS EMKQRCHRYKEAIGWSEFCMLRYSSRNISKRLEISPGACLLNTRSAVAGNPEEILRVL QVLLDYLRRVAAARGALLKYATGNSSLGAQIWYALVQCTPDLSEQDCNDCLEAATEGS GSCCVGQMGCRVLRPSCNLRFESAKFFDAAPAVPPPQSPQSTKEEDKQKKSVWIPLGA SLSATLGLALFSACGFFIWRRRNIQEDNENSQEVQLLDLVQGSILDEHSSENFNRENV SRSQEFPSIQLDILHVATNYFCNENKLGEGGFGPVYKGTLADGKAIAVKRLSRTSGQG LLEFKNEVMLIAKLQHRNLVRLLGCCLEKNEKLLVYEFMPNRSLDVFLFDSSMAVELS WPKRFSIIKGISRGVMYLHEDSRLRIIHRDLKASNVLLDHEMNPKISDFGMARIFGGD QNQVNTNRVVGTYGYMAPEYAMEGLFSIKSDVFSFGVLLLEIISGKRNNGFHVSERGE SLLTFAWKLWSKGQGMELMDQLLVQSCVAAEVLKCIHIGLLCVQEDPADRPSMSSVVV MLGSETITLPRPVEPAFSVGRVVAEPTEPTSNDRNRSINEVTISNLSPR" mobile_element 25885071..25885376 /note="source:CACAO_on_E175_scaffold_1 447 747" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(25885446..25885843) /note="source:CACAO_on_S_E390_scaffold_9 2451 2850" /mobile_element_type="transposon:TIR/Mutator" gene complement(25886342..25890485) /locus_tag="TCM_030128" /note="dbxref CacaoGD:Thecc1EG030128" mRNA complement(join(25886342..25887012,25887086..25887236, 25887697..25887934,25888055..25888265,25888433..25888644, 25888724..25888831,25889625..25890485)) /locus_tag="TCM_030128" /product="Cysteine-rich RLK 10, putative" /inference="alignment:exonerate-protein:2:frave:gene19524" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030141t1" /inference="similar to AA sequence:ricco:29842.m003661" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1356t9_C1" CDS complement(join(25886704..25887012,25887086..25887236, 25887697..25887934,25888055..25888265,25888433..25888644, 25888724..25888831,25889625..25890390)) /locus_tag="TCM_030128" /note="dbxref ricco:29842.m003661; paralog of Thecc1EG030141t1" /codon_start=1 /product="Cysteine-rich RLK 10, putative" /protein_id="EOY28579.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXS9" /translation="MVSFHISVTLSFYIFLGLFCLNSEAAVNFLNANCPSAGTTTYTR NSTYQRNLNFILSSLQSNSTVESGFYNLEVGQDPSDIVYGLFLCRGDVTQDICQECVN TAAGEIVLLCPDQKTAVIFYDECTIRYSDRSFFSQWKMEFVLYTFNTGNVSTPDGFMA LLENTTKGIAGQAANDQSGRKFATEEADFNSFPKLYTLAQCTTDLSVSSCYNCLQTAV SLLPICCLGKPGGRVMLQSCNIRYELYPFYRITAEPQDKKSIWIPLGASLSVTLGLAL FSAGGFFIWRRRNFQEDKEISQEVQLLDLVEGRFRNEHTSEDSSGEKGAGSQKLIPSF QLHILHAATNHFSDENKLGKGGFGPVYKGTLADGQEIAVKRLSRTSHQGLVEFKNEVM SIARLQHRNLVRLLGCCLEKNEKLLVYEFMPNRSLDVFLFDPSMAAQLSWQKRFNIIK GIARGIMYLHEDSRLRIIHRDLKASNVLLDHEMNPKISDFGMARIFDGDQNQANTSRL VGTRGYMAPEYAREGLFSIKSDVFSFGVLLLEIISGKKNNGFHVSEHGESLLTFAWKL WSKGQGMELLDLHLAQSCVAVEVLKCINIGLLCVQEDPAVRPSLTSVIVILESETIRL PRPTVPAFFVGRVIEEPTQPTSNDIICSVNDVTISKLSPR" gene 25891141..25894893 /locus_tag="TCM_030131" /note="dbxref CacaoGD:Thecc1EG030131" mRNA join(25891141..25892010,25892310..25892417, 25892525..25892622,25892727..25892937,25893029..25893266, 25893449..25893599,25893709..25893783,25894546..25894893) /locus_tag="TCM_030131" /product="Cysteine-rich RLK 29, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s02550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030102t1" /inference="similar to AA sequence:Phytozome:GSVIVT01006683001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1623t9_G2" CDS join(25891185..25892010,25892310..25892417, 25892525..25892622,25892727..25892937,25893029..25893266, 25893449..25893599,25893709..25893783,25894546..25894605) /locus_tag="TCM_030131" /note="paralog of Thecc1EG030102t1" /codon_start=1 /product="Cysteine-rich RLK 29, putative" /protein_id="EOY28580.1" /db_xref="Phytozome:GSVIVT01006683001" /db_xref="TAIR:AT4G38830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1T8" /translation="MDCSRQFFFSSLIVTFFLSLTVAQQQRFYYFCLETSGSFTRSST YEANLNRVLSSFSSNTENDYGFYNISSGQGSDAANAIALCRGDVNSGDCLDCINNAAT ELRNLCANENEAIIGYEKCLLRYTNRSIFGVAETNPSFYMWNVNNVTDLDAFNQALIA LMDNLSTKASSGTSRSKFAMGSAEVAASQTIYALVQCTPDLTGPACSSCLSQAIALLP SCCNSKQGGMVFGPSCNLRFDIIRFYNLATPDTPFRRRSTPAPPLSLPPSMHNTKKKG KWIIIITVSAAAFAVLLISSCIFFLRVKKSKAKAEKSLQYDFSTIRAATDDFSDANKL GQGGFGAVYKGTIGSEELIAVKRLTTNSGQGDLEFKNEVQLVAKLQHKNLVRLQGFCL EGNERLLIYEFVPNASLDQFLFDPVRRAYLDWERRHKIIRGIAQGLLYLHEDSRLQII HCNLKASNILLDAELNPKISDFGMARLCALDQTQSVTSRIEGTNGYMAPEYALHGQFS IKSDVFSFGVLLLEILCGQKNSAFCVGENVEDLLSYAWRNWKDGTALKLVDPILGEAP RTEGKFSTTKKLPALTNNLTRF" mobile_element 25894920..25902297 /note="source:INTACT46_F120_scaffold_6-int 1 7378" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25906346..25915300) /locus_tag="TCM_030134" /note="dbxref CacaoGD:Thecc1EG030134" mRNA complement(join(25906346..25906751,25906825..25906975, 25908136..25908373,25908496..25908706,25908877..25909085, 25909166..25909303,25909991..25910668,25912527..25912749, 25912841..25912991,25913181..25913418,25913519..25913729, 25913848..25914053,25914158..25914274,25914385..25915300)) /locus_tag="TCM_030134" /product="Cysteine-rich RLK 10" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s02340.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030126t2" /inference="similar to AA sequence:ricco:29842.m003676" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1192t14_C2" CDS complement(join(25906443..25906751,25906825..25906975, 25908136..25908373,25908496..25908706,25908877..25909085, 25909166..25909303,25909991..25910668,25912527..25912749, 25912841..25912991,25913181..25913418,25913519..25913729, 25913848..25914053,25914158..25914274,25914385..25915171)) /locus_tag="TCM_030134" /note="dbxref ricco:29842.m003676; paralog of Thecc1EG030126t2" /codon_start=1 /product="Cysteine-rich RLK 10" /protein_id="EOY28581.1" /db_xref="TAIR:AT1G11300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1T0" /translation="MDHSRSRKTIRLLLLLLCSFLFGLHDLALADPPYAHCSNNTSNN LLNSSFQNNLNNLLSLLHSQASISKYNNTSYGNGTDRVYGQYMCLDYVPYDTCQACIS AASQAIVNLCRNRTEAVVWEEYCQLRYSDINFFGRLNVADNFFQDNVINISDPVHFQS IVENKLRDLTKRAAFNSSANMYAAGGEPYTGDDTLYAMVQCTRDLSPDNCSKCLEAAI KDVSSECYASRGARLLSRSCYLRYELYAFYEGAEDSSVSTKKEGGGGRKTWMIVVLTI GSAVLVILLLASTIYCVARKKGTGKGKEKILRNQMQIHNIGDPENTDLQNQYFEGLDE LRAHDSYFDLATINSATDNFSDSKLLGQGGFGPVYKGVLPDGKEVAVKRLSSFSEQGT LEFTNEVLLILKLQHKNLVRLLGFCVDQQEKLLVYEFMPNSSLDVVLFDTKKRAQLNW SRRLNIINGIARGILYLHEDSRLRIIHRDIKASNVLLDCDMNPKISDFGMARIFAGAD SEANTARIVGTYGYMAPEYAMEGLYSIKSDVFSFGVLLLEIITGRRNAGFHQSKRDPS LVAYAWHLWNEGNALELMDPLLTDGCPDEFLRFIHIGLLCVEEDAFNRPSMPSVVVML KGETVTLSQPQQPAFSVRRLGNYTANSAYERDLNGLFNEISSITKPNYGFFYSQYFGE VDALALCRGDIKLDDCTRCLNETLSQIKQNCPQNKEAIGWSGHCMIHYSSRNISGRLE SSPVTCRCKAEHLLKTDELPFFEVQGKLLNDLGSRAAAGGSLLKYAAGNSSLNVSQSL FALVQCTPDLTEGECNACLTTAMAEMRDCCIETTGGMVFRPRCFLRFETYPFFDAAVA VPNPQPPPDERSPKGPYNSEETKQKKSNWIPFGASLSAILGLALFSACGFFIWERRTN IQENGENRQEAQLLDLVGGRICSEHSSETFSGQNVAKSQEFLSFQLHILHAATDHFAD KNKLGEGGFGSVYKGTLPDGKEIAVKRLSGTSSQGLLELKNEVMLIAKLQHRNLVRLL GCCLEKTEKLLVYEFMPNRSLDVFLFDSSVAALLSWQKRFSVIKGIARGIMYLHEDSR LKIIHRDLKASNVLLDHEMNPKISDFGMARIFGGDQNQANTKRVVGTYGYMAPEYVME GVFSIKSDVFSFGVLLLEIISGKRNNGYHVSERGESLLSFAWKLWSKGQGIELIDQLL VQSCVATQVLKCVQIGLLCVQKDPADRPSMTSVIVMLESETLTLPPPAEPAFFVERVV AEPTQSTSSDGISSINEITISDTLPR" mobile_element 25911480..25911573 /note="source:CACAO_M_S_E66639_F28_scaffold_5 4737 4841" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25916066..25974537) /locus_tag="TCM_030137" /note="dbxref CacaoGD:Thecc1EG030137" mRNA complement(join(25916066..25916374,25971544..25971576, 25971669..25971819,25971911..25972148,25972392..25972452, 25972569..25972759,25972875..25972988,25973066..25973182, 25973702..25974537)) /locus_tag="TCM_030137" /product="Cysteine-rich RLK 10, putative" /inference="alignment:exonerate- protein:2:frave:gene19540.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030149t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s02300.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc4472t1" CDS complement(join(25916141..25916374,25971544..25971576, 25971669..25971819,25971911..25972148,25972392..25972452, 25972569..25972759,25972875..25972988,25973066..25973182, 25973702..25974440)) /locus_tag="TCM_030137" /note="paralog of Thecc1EG030149t1" /codon_start=1 /product="Cysteine-rich RLK 10, putative" /protein_id="EOY28582.1" /db_xref="Phytozome:POPTR_0004s02300.1" /db_xref="TAIR:AT4G23180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1I5" /translation="MLLLILRLFMLFNEVSPNLLFPFCSDNTNYTSNSTFENNLERVL EALPSNTSDTGFYSTSIGDGADQVYGRALCRGDVNTSLCRSCIENASQDIMNLCKTEE SIVWYDLCQVQYSFQNSSLMVYTGKYPESNKQETNISHPDHFNDVLTFLMNNISTEAA SLSKIMFGFGEIKFNKKETIYGLVQCSRDISGSNCQTCLDSALGDLKACCYSRTGGTV LSRNCNVRFQMYHFYNASNSPLIYPRSAGDKWSSGILVAVICATALVLALLIGTSVVY CRWKKRTQKGMFCYSRCLLSLYGWIAEPFWVLPYYHLNDLFLAMPRSYEEISQKALLY ELASPRGVTITQEGELVTSQEFPFLDLPTIREATDDFSDSNRLGQGGFGTVYKGVLAD GKEVAVKRLSRRSWQDPEKRPQLDWKTCSEIISGIARGLLYLHEDSRLKIIHRDLKPS NVLLDQDMVAKISDFGMARIFCENQNSANTKRVVGTYGYMAPEYAMEGLFSVKSDVFS FGVIILEILCGKKNSGFYLTEHAQTLLAYAWRLWKEGKELEIVDPCLLESCSTPEINR CIHVGLLCVQEDPADRPTISDIVVVLGSDTHTIALPEPRRPASSVGRVVAVDQSSTRD P" gene complement(25916287..25971485) /locus_tag="TCM_030138" /note="dbxref CacaoGD:Thecc1EG030138" mRNA complement(join(25916287..25916407,25916500..25916650, 25916743..25916972,25971201..25971485)) /locus_tag="TCM_030138" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01820.1.2" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2165t1_C1" CDS complement(join(25916604..25916650,25916743..25916851)) /locus_tag="TCM_030138" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28583.1" /translation="MYCWTKTWLPRYQISAWQGFFVKIRIQLTLKELWEHMDTWLQNM QWRDFSL" mobile_element complement(25917314..25917352) /note="source:INTACT228_F18_scaffold_4-int 3858 3896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25917346..25919466 /note="source:CACAO_M_E85278_F18_scaffold_10 1562 3652" /mobile_element_type="retrotransposon:LTR/Gypsy" assembly_gap 25919467..25929466 /estimated_length=10000 /gap_type="between scaffolds" mobile_element complement(25929467..25929957) /note="source:CACAO_M_E44256_F18_scaffold_5 1 489" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25929958..25931679) /note="source:INTACT245_F57_scaffold_7-int 1 1724" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25933025..25933151) /note="source:scaffold_7_CACTA_0789 11594 11720" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25933026..25933209) /note="source:CACAO_M_E48452_F5_scaffold_6 14604 14825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25933868..25935989 /note="source:INTACT242_F12_scaffold_1-int 2493 4548" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25936905..25946993) /locus_tag="TCM_030139" /note="dbxref CacaoGD:Thecc1EG030139" mRNA complement(join(25936905..25937308,25942681..25942959, 25943037..25943187,25944004..25944073,25944176..25944241, 25944354..25944564,25944697..25944905,25945016..25945135, 25946209..25946993)) /locus_tag="TCM_030139" /product="Cysteine-rich RLK 10, putative" /inference="alignment:exonerate- protein:2:ricco:29842.m003661" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030123t1" /inference="similar to AA sequence:ricco:29842.m003661" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(25937081..25937308,25942681..25942959, 25943037..25943187,25944004..25944073,25944176..25944241, 25944354..25944564,25944697..25944905,25945016..25945135, 25946209..25946950)) /locus_tag="TCM_030139" /note="dbxref ricco:29842.m003661; paralog of Thecc1EG030123t1" /codon_start=1 /product="Cysteine-rich RLK 10, putative" /protein_id="EOY28584.1" /db_xref="TAIR:AT4G23180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXS9" /translation="MVSIEISMTPLFYIFLCLPSLKSAAAINFLYNYCDSNTTTYTAN SAYQQNLNFLLSSLKSNSTRESGFYNLTVGRDAPDIVYGLFLCRGNVTQDTCQECVST AAGEILQRCPEQKTALICYDECTLRYSNRSFFSIWQRDPGLLLLNTGNVSEPDQFMEL LGNTMQEIATRAADDQSGKKFATEEANITSFSTIYTLAQCTPDLSAFNCYTCLQTAIS YLPICCHGRRGGRVIFPSCNVRYELYPFTGVKKRKKSKWIPLGASLSATIGLALFSAC GFFIWRRRNIQEDNENSQEVQFLDLVGGSIRNEHSRENFSEEKMSRSQEFPSIQLDIL HAATNHFCDENKLGEGGFGLVYKGTLPDGKEIAVKRLSRTSGQGLLEFKNEVMLIARL QHRNLVRLLGCCLEQNEQLLVYEFMPNRSLDVFLFDSSMAAQLSWLKRFSIIKGIARD FGLARIFDGDQNQANTNRVVGTYGYMAPEYAMEGLFSIKSDVFSFGVLLLEIISGKKN NGFHLSEHGESLLTFAWKLWSKGQGMKLIDQLLVQSCVATEVLKCIHIGLLCVQEDPA DRPRMTSVIVMLESETITLPRPAEPAFSVGRVVAEPTEPTSNDRIYSVNEGTLPDGKE IEVKRLSRTFGQGLFEFKNEVMFAKLRHRNLVRLLGCCLEKNEKLLVYGFLPNSSLDV FLFGLILQP" mobile_element 25939210..25939521 /note="source:INTACT464_F222_scaffold_9-int 1 289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25940061..25940323 /note="source:CACAO_M_E70014_F74_scaffold_10 8030 9360" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25940324..25941445) /note="source:CACAO_M_E49205_F4_scaffold_6 2148 3277" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25941838..25941908) /note="source:scaffold_7_CACTA_0779 2936 3006" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25947339..25947609) /note="source:scaffold_2_CACTA_0252 7067 7333" /mobile_element_type="transposon:TIR/CACTA" gene complement(25948810..25953065) /locus_tag="TCM_030141" /note="dbxref CacaoGD:Thecc1EG030141" mRNA complement(join(25948810..25949303,25949377..25949527, 25949985..25950222,25950345..25950555,25950723..25950934, 25951014..25951121,25952164..25953065)) /locus_tag="TCM_030141" /product="Cysteine-rich RLK 10, putative" /inference="alignment:exonerate- protein:2:ricco:29842.m003658.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030128t1" /inference="similar to AA sequence:ricco:29842.m003661" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS complement(join(25948995..25949303,25949377..25949527, 25949985..25950222,25950345..25950555,25950723..25950934, 25951014..25951121,25952164..25952929)) /locus_tag="TCM_030141" /note="dbxref ricco:29842.m003661; paralog of Thecc1EG030128t1" /codon_start=1 /product="Cysteine-rich RLK 10, putative" /protein_id="EOY28585.1" /db_xref="TAIR:AT4G05200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXS9" /translation="MVSFHISMTLSFYIFLCLSCLNSEAAVNFLYANCPSAGTTTYIR NSTYQRNLNFILSSLQSNSTVESGFYNLEVGQDPSDIVYGLFLCRGDVTQDICQECVN TAAGEIVLLCPDQKTALIVYDECTIRYSDRSFFSQWKMEFVLYTSNTSNVSTPDGFMA LLENTTKGIAGQAANDQSGRKFATEEADFNSFPKFYTLAQCTTDLSVSSCYNCLQTAI SYLPICCLGKPGGRVVLQSCNIRYELYPFYRITADPQDKKSIWIPLGASLSATLGLAL FSAGGFFIWRRRNIQEDKEISQEVQLLDLVEGRFRNEYTSEDSGGEKGARSHKLIPSF QLHILHAATNHFSDENKLGKGGFGPVYKGTLADGKEIAIKRLSRTSHQGLVEFKNEVM SIARLQHRNLVRLLGCCLEKNEKLLVYEFMPNRSLDVFLFDPSMAAQLSWQKRFNIIK GIARGIMYLHEDSRLRIIHRDLKASNVLLDHEMNPKISDFGMARIFDGDQNQANTSRL VGTRGYMAPEYAREGLFSIKSDVFSFGVLLLEIISGQKNNGFHVSEHGESLLTFAWKL WSKGQGMELLDRHLAQSCVAAEVLKCIHIGLLCVQEDPAVRPSMTSVIVILESETIRL PRPTVPAFFVGRVIAEPTQPTSNDIICSVNDVTISKLSPR" gene 25953052..25957451 /locus_tag="TCM_030142" /note="dbxref CacaoGD:Thecc1EG030142" mRNA join(25953052..25953120,25953587..25954626, 25954907..25955171,25955285..25955382,25955485..25955695, 25955787..25956024,25956169..25956319,25956429..25957451) /locus_tag="TCM_030142" /product="Cysteine-rich RLK 29, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s02300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030102t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s02560.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1622t2" CDS join(25953724..25954626,25954907..25955171, 25955285..25955382,25955485..25955695,25955787..25956024, 25956169..25956319,25956429..25956665) /locus_tag="TCM_030142" /note="paralog of Thecc1EG030102t1" /codon_start=1 /product="Cysteine-rich RLK 29, putative" /protein_id="EOY28586.1" /db_xref="Phytozome:POPTR_0004s02560.1" /db_xref="TAIR:AT4G38830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H7Y7" /translation="MDCSRQFFFSSLIVTFLLSLTVAQQQLVNYFCLDTSGSFTRSST YEANLNRVLSSFSSNTANDYGFYNISSGQGSEGANAIALCRGDVNSGGCLDCINNAAT DLRNLCSNEKEAIIWYENCLLRYTNRSIFGVAETNPSFYMWNVNNVTDLDAFNQALIA LMDNLSTNASSGTSLRKFATGSAEVTAAQTIYALVQCTPDLTRPACSSCLSQAIALLP SCCNSKQGGMVFGPSCNLRFDIKRFYNLATADAPLPPSSAPQSPPSPPSSKRTRGTVS GLFCFVSLIGYSQNSSFCLGPVSFEKTGEEGFSKLINERILSCPFADAIARVVPKFTI SALVREVHFLNFAGKMSNSYRTIIIITVPAAAFAVLLISSCIFFLRVKKSKAKAEKSL QYDFSTIRAATDDFSDTNKLGQGGFGTVYKGTIASGELIAVKRLTTDSGQGDLEFKNE VQLVAKLQHKNLVRLQGFCLEGNERLLIYEFVPNASLDQFLFDPVRRAYLDWERRHKI IGGIAQGLLYLHEDSRLQIIHCNLKASNILLDAELNPKISDFGMGRLCALDQTQSVTS RIEGTNGYMAPEYALHGQFSIKSDVFSFGVLLLEILCGQKNSAFCVGENVEDLLSYAW RIWKDGTALKLVDPILGEASRTQVTRCIHIGLLCVQENAAQRPNMASVVLMLTSDSVT VPLPSEPAFFVHSNTRKT" gene complement(25959167..25961534) /locus_tag="TCM_030144" /note="dbxref CacaoGD:Thecc1EG030144" mRNA complement(join(25959167..25959699,25959775..25959925, 25960586..25960791,25960933..25961141,25961223..25961342, 25961441..25961534)) /locus_tag="TCM_030144" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 10" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01820.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030139t1" /inference="similar to AA sequence:Phytozome:Glyma06g46910.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1154t22" CDS complement(join(25959391..25959699,25959775..25959925, 25960586..25960791,25960933..25961007)) /locus_tag="TCM_030144" /note="paralog of Thecc1EG030139t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 10" /protein_id="EOY28587.1" /db_xref="Phytozome:Glyma06g46910.1" /db_xref="TAIR:AT4G23180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SQR1" /translation="MLHAATNHFCDENKLGEGGFGPVYKGTLADGKEIAVKRLSRTSG QGLLEFKNEVMLIARLQHRNLVRLLGCCLEKNEKLLVYEFMPNRSLDVFLGYMAPEYA MEGLFSIKSDVFSFGVLLLEIISGKRNNGFHLLECGESLLTFAWKLWSKGKGMELIDQ HLVQSCVAAEVLKCIHIGLLCVQEDPADRPSMSSVVVMLGSEIIPIPRPTEPAFSIGR VVAKPTEPTSNDRICSVNEVTISNLSPR" mobile_element 25962326..25962623 /note="source:scaffold_6_CACTA_0699 13489 13787" /mobile_element_type="transposon:TIR/CACTA" gene complement(25964158..25966114) /locus_tag="TCM_030145" /note="dbxref CacaoGD:Thecc1EG030145" mRNA complement(join(25964158..25965055,25965924..25966114)) /locus_tag="TCM_030145" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 26" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g035370.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030126t2" /inference="similar to AA sequence:Phytozome:Glyma10g39910.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1154t11" CDS complement(25964233..25965042) /locus_tag="TCM_030145" /note="paralog of Thecc1EG030126t2" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 26" /protein_id="EOY28588.1" /db_xref="Phytozome:Glyma10g39910.1" /db_xref="TAIR:AT4G38830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H844" /translation="MATESSRKLFLIFFFPGLTSLVTLTIAIDPYFESRCANNTGNYT ANSAYERDLSSLFNEISSTTKLNSGFFHSKFGEVNAIALCRGDVKLNVCTSCLNDTIS EMKERCPRYKEAIGWSEFCMLRYSSRDISERLELSPEACIYDLNDVIGDRDAYIQEVV MLVDNLRSRAAAGGTLLKYAADNSSHGAYQMLYALVQCTPDLSKQDCNDCLEGATRKI RGCCTGKNGCRVLLPSCNLRFESYPFSDAAPAIPPPQSPSDNQSTEGRVSK" mobile_element complement(25973444..25973577) /note="source:INTACT23_F11_scaffold_9-int 789 927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25973451..25973566 /note="source:CACAO_M_E1542_F20_scaffold_1 11908 12022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25979403..25979453 /note="source:scaffold_7_CACTA_0776 5939 5988" /mobile_element_type="transposon:TIR/CACTA" gene complement(25981176..25982366) /locus_tag="TCM_030147" /note="dbxref CacaoGD:Thecc1EG030147" mRNA complement(join(25981176..25981568,25981660..25981810, 25982000..25982237,25982337..25982366)) /locus_tag="TCM_030147" /product="Receptor kinase 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0314s00200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030134t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012617001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8092t1" CDS complement(join(25981272..25981568,25981660..25981810, 25982000..25982088)) /locus_tag="TCM_030147" /note="paralog of Thecc1EG030134t1" /codon_start=1 /product="Receptor kinase 1, putative" /protein_id="EOY28589.1" /db_xref="Phytozome:GSVIVT01012617001" /db_xref="TAIR:AT1G65790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZM8" /translation="MNPKISDFGMARIFAGANSEANTARIVGTYGYMAPEYAMEGLYS IKSDVFSFGVLLLEIITGRRNAGFHQSKRVPTLVAYAWHLWNEGNALELMDPLLTDGC PDEFLRYIHIGLLCVEEDAFNRPTMSSVVVMLKGEAVTLCQPQQPAFSVGRFADHHQT LAHSCSVNGLTISNIAPR" gene complement(25984510..25989552) /locus_tag="TCM_030149" /note="dbxref CacaoGD:Thecc1EG030149" mRNA complement(join(25984510..25985276,25985371..25985521, 25985615..25985852,25985939..25986149,25986265..25986455, 25986762..25986878,25987370..25988301,25989421..25989552)) /locus_tag="TCM_030149" /product="Cysteine-rich RLK 10, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s02300.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030137t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s02300.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.19 coverage" CDS complement(join(25984971..25985276,25985371..25985521, 25985615..25985852,25985939..25986149,25986265..25986455, 25986762..25986878,25987370..25988174)) /locus_tag="TCM_030149" /note="paralog of Thecc1EG030137t1" /codon_start=1 /product="Cysteine-rich RLK 10, putative" /protein_id="EOY28590.1" /db_xref="Phytozome:POPTR_0004s02300.1" /db_xref="TAIR:AT4G23180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1I5" /translation="MQNVLQRKRKGKRKMGKYALSAMLLLILRLFVLFDEVSPNLLFT FCSENTNYTSNSTFENNLERVLEALPSNTSDTGFYSTSIGDGADQVYGRALCRGDVNT SLCRSCIENASQDIMNLCKTEEAIVWYDLCQVQYSFQNSSLMVYTGKYPESNKQETII SHPDHFNDVLTFLMNNISTKAAALSKIMFGFGEIKFNKKETIYGLVQCSRDISGSKCQ TCLDSALGDLKACCYSRTGGTVLSRNCNVRFQMYHFYNASNSPLIYPKSAGDKWSSGM LVAVICATALVLALLIGSSVVYYRWKKRTQNDEAISQKALLYELASPRGVTITQEGEL VTSQEFPFLDLPTIRAATDDFSDSNRLGQGGFGTVYKGVLADGKEVAVKRLSRRSWQG LEELKNEVILISKLQHKNLVRLLGCGIEGEEKLLIYEFMPNKSLDFFIFDPEKRPQLD WKTCFEIISGIARGLLYLHEDSRLKIIHRDLKPSNVLLDQDMVAKISDFGMARIFCEN QNSANTKRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVIVLEILCGQKNSGFYLTEHAQ TLLAYAWQIWREGKELEIVDPFLLESCSKPEINRCFHVGLLCVQEDPADRPTMSDIVV VLGSDTDTIALPEPKRPAFSVGRVIAIDQSSMIDPSMNQMTVSDISAR" mobile_element 25987140..25987285 /note="source:CACAO_M_E1542_F20_scaffold_1 11908 12022" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25990637..25994444 /locus_tag="TCM_030150" /note="dbxref CacaoGD:Thecc1EG030150" mRNA join(25990637..25990862,25990974..25991181, 25991309..25991385,25991588..25991637,25992060..25992124, 25992226..25992277,25992352..25992422,25992565..25992631, 25992950..25993021,25993148..25993193,25993688..25994444) /locus_tag="TCM_030150" /product="Trimeric LpxA-like enzymes superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003660" /inference="similar to AA sequence:Phytozome:POPTR_0004s03950.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1146t6_C1" mRNA join(25990649..25990862,25990974..25991181, 25991309..25991385,25991588..25991637,25992060..25992124, 25992226..25992277,25992352..25992422,25992565..25992631, 25992950..25993021,25993148..25993217,25993688..25994166) /locus_tag="TCM_030150" /product="Trimeric LpxA-like enzymes superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29842.m003660" /inference="similar to AA sequence:Phytozome:POPTR_0004s03950.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc738t5; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1146t6_C1" mRNA join(25990660..25990862,25990974..25991181, 25991309..25991385,25991588..25991637,25992060..25992124, 25992226..25992277,25992352..25992412,25992565..25992631, 25992950..25993021,25993148..25993589) /locus_tag="TCM_030150" /product="Trimeric LpxA-like enzymes superfamily protein, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:29842.m003660" /inference="similar to AA sequence:Phytozome:GSVIVT01012621001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8182t5; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1146t6_C1" CDS join(25990697..25990862,25990974..25991181, 25991309..25991385,25991588..25991637,25992060..25992124, 25992226..25992277,25992352..25992422,25992565..25992631, 25992950..25993021,25993148..25993193,25993688..25993782) /locus_tag="TCM_030150" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Trimeric LpxA-like enzymes superfamily protein, putative isoform 1" /protein_id="EOY28591.1" /db_xref="Phytozome:POPTR_0004s03950.1" /db_xref="TAIR:AT4G21220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CVK2" /translation="MAVTLKRLSFICPFLFRNFPIQNFPLSTSSRFGTFCNFSVSPTN QTTLQSSTASSEKGAEFDHRGFLKWQNGGGYFHESACIDPTVLIEIGAIVHSKSVLGA NAHVGSGTVIGPSVTIGQFTKIGYNTALSNCTVGDSCVIHNGVCIGQDGFGFFVDEDG SMVKKPQMLNARIGNYVEIGANTCIDRGSWRDTVIGDHAKIDNLVQIGHNVVIGNSCM LCGQVGIAGSVTIGDYVVLGGRVAVRDHVSIASKVRLAANSCVTKDIRTPGDYGGFPA VPIHVWRRQIAIQCQAVAFSIALRRAFHRPVSTFTWASTSRVLSFP" CDS join(25990697..25990862,25990974..25991181, 25991309..25991385,25991588..25991637,25992060..25992124, 25992226..25992277,25992352..25992422,25992565..25992631, 25992950..25993021,25993148..25993216) /locus_tag="TCM_030150" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Trimeric LpxA-like enzymes superfamily protein isoform 2" /protein_id="EOY28592.1" /db_xref="Phytozome:POPTR_0004s03950.1" /db_xref="TAIR:AT4G21220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CVK2" /translation="MAVTLKRLSFICPFLFRNFPIQNFPLSTSSRFGTFCNFSVSPTN QTTLQSSTASSEKGAEFDHRGFLKWQNGGGYFHESACIDPTVLIEIGAIVHSKSVLGA NAHVGSGTVIGPSVTIGQFTKIGYNTALSNCTVGDSCVIHNGVCIGQDGFGFFVDEDG SMVKKPQMLNARIGNYVEIGANTCIDRGSWRDTVIGDHAKIDNLVQIGHNVVIGNSCM LCGQVGIAGSVTIGDYVVLGGRVAVRDHVSIASKVRLAANSCVTKDIRTPGDYGGFPA VPIHVWRRQIAIQCQGSNKGTS" CDS join(25990697..25990862,25990974..25991181, 25991309..25991385,25991588..25991637,25992060..25992124, 25992226..25992277,25992352..25992412,25992565..25992569) /locus_tag="TCM_030150" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Trimeric LpxA-like enzymes superfamily protein, putative isoform 4" /protein_id="EOY28594.1" /db_xref="Phytozome:GSVIVT01012621001" /db_xref="TAIR:AT4G21220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CVK2" /translation="MAVTLKRLSFICPFLFRNFPIQNFPLSTSSRFGTFCNFSVSPTN QTTLQSSTASSEKGAEFDHRGFLKWQNGGGYFHESACIDPTVLIEIGAIVHSKSVLGA NAHVGSGTVIGPSVTIGQFTKIGYNTALSNCTVGDSCVIHNGVCIGQDGFGFFVDEDG SMVKKPQMLNARIGNYVEIGANTCIDRGSWRDTVIGDHAKIDNLVQIGHNVVIGNSCM LCGQVGIAG" mRNA join(<25990766..25990862,25990974..25991181, 25991309..25991385,25991588..25991637,25992060..25992124, 25992226..25992277,25992352..25992422,25992565..25992631, 25992911..25993021,25993148..25993211,25993520..25994167) /locus_tag="TCM_030150" /product="Trimeric LpxA-like enzymes superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29842.m003660" /inference="similar to AA sequence:Phytozome:POPTR_0004s03950.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1146t3_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1146t6_C1" CDS join(<25990766..25990862,25990974..25991181, 25991309..25991385,25991588..25991637,25992060..25992124, 25992226..25992277,25992352..25992422,25992565..25992631, 25992911..25993021,25993148..25993211,25993520..25993782) /locus_tag="TCM_030150" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Trimeric LpxA-like enzymes superfamily protein, putative isoform 3" /protein_id="EOY28593.1" /db_xref="Phytozome:POPTR_0004s03950.1" /db_xref="TAIR:AT4G21220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CVK2" /translation="FPLSTSSRFGTFCNFSVSPTNQTTLQSSTASSEKGAEFDHRGFL KWQNGGGYFHESACIDPTVLIEIGAIVHSKSVLGANAHVGSGTVIGPSVTIGQFTKIG YNTALSNCTVGDSCVIHNGVCIGQDGFGFFVDEDGSMVKKPQMLNARIGNYVEIGANT CIDRGSWRDTVIGDHAKIDNLVQIGHNVVIGNSCMLCGQVGIAGSVTIGDYVVLGGRV AVRDHVSIASKVYFIRKYLSWRLQVRLAANSCVTKDIRTPGDYGGFPAVPIHVWRRQI AIQCQGSNKGTSFHFFDPRRSLTFFFLLAILPSLPIGTFPSLCMSWCLLFMPHVLYLI FVDKSTFISAVAFSIALRRAFHRPVSTFTWASTSRVLSFP" gene complement(25993391..25996065) /locus_tag="TCM_030151" /note="dbxref CacaoGD:Thecc1EG030151" mRNA complement(join(25993391..25994138,25994707..25995205, 25995682..25996065)) /locus_tag="TCM_030151" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s02260.1" /inference="similar to AA sequence:Phytozome:Glyma11g00530.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS complement(join(25993497..25994138,25994707..25995205, 25995682..25995788)) /locus_tag="TCM_030151" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28595.1" /db_xref="Phytozome:Glyma11g00530.1" /translation="MLLSSLKHGPVVFLLIGICRSLIFHQRHARKKCVERPQHPVYKV VDVYISHINYRNSTFHQGWNSRFHHDRNQTVKDSWKSRIHGGSNSTYRNISITLKIEI SNPNKRIGIDHDDIKVALYHSDSFIGNNSVAGFHQGYRNTTFCEVEVKTNQHSWRGIM GRKVDLRICLKSGVHYIDGIFRCRTNRHPMDFDAYRKLRFVPDDLSIQSFWKPTSILS EDVTVTMCKTDNFYLWLLQVVGLLGLAALCLWLAMRPKNPSYTILNLSVPALNDSNAS GTGIIQYELDIKNPNEDSGIYYDDILLIFYHGQDRVGDNTIPSFYQGKDKTREVLAHV NVETGLWKALRSAILNATAEIKVDLSTKIKYKTWGMKSKHHDMHREGKVPIGKDGKIA NKKKKVKLRRGSKKWKVRTTRLL" gene complement(25996332..26002257) /locus_tag="TCM_030152" /note="dbxref CacaoGD:Thecc1EG030152" mRNA complement(join(25996332..25997457,26002215..26002257)) /locus_tag="TCM_030152" /product="Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family" /inference="alignment:exonerate-protein:2:frave:gene19544" /inference="similar to AA sequence:Phytozome:Glyma20g27840.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02856t00001_C2" CDS complement(25996671..25997363) /locus_tag="TCM_030152" /codon_start=1 /product="Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family" /protein_id="EOY28596.1" /db_xref="Phytozome:Glyma20g27840.1" /db_xref="TAIR:AT4G05220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M0X3" /translation="MSNGDGLPIRYTQQEFQPQPQPQPMKRNHTAQRYARRVRDSFTT RVTKTLCAIFLSLLLCVGIVMFILWLSLRPHRPRFHIMEFTVPGLAQPSGFENAQITF NVTARNPNQHIGIYYDSMVGSIYYKDQRIGSTPLLDPFFQEPKTTTIVYRTFDTATLT VNSNRWKEFMDDRQQGMVVFRLDITSVIRFKVSTWDSKHHKMHVNCDVAVGPDGMILP TSKDKKCPVYFS" gene 26004629..26006935 /locus_tag="TCM_030153" /note="dbxref CacaoGD:Thecc1EG030153" mRNA join(26004629..26004911,26005115..26005300, 26005527..26005659,26006421..26006631,26006723..26006935) /locus_tag="TCM_030153" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene19545" /inference="similar to AA sequence:ricco:29842.m003653" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05582t00001" CDS join(26004882..26004911,26005115..26005300, 26005527..26005659,26006421..26006631,26006723..26006804) /locus_tag="TCM_030153" /note="dbxref ricco:29842.m003653" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28597.1" /db_xref="TAIR:AT4G21215.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZM2" /translation="MMDMAENPKLDLASSHEARGSEEKMSTQKISVSDHLNGFQYTTD KSDSFVIDMESFSHGGANKEINPNSRITLQRNLSRKGSQRGDKKMITPSCTNPNSSSS VNDRDSFAATSSPKGSSTPEKPTAVVVGSTDHASNPQIHHQITITTGSSTAAPESRFS LRRNSFRRSHPQWQLNPKRILFFFATLSSLGTILLIYFTLSISKMNGEENALD" gene 26007007..26008230 /locus_tag="TCM_030154" /note="dbxref CacaoGD:Thecc1EG030154" mRNA join(26007007..26007110,26007219..26008230) /locus_tag="TCM_030154" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.98 coverage" CDS join(26007027..26007110,26007219..26007407) /locus_tag="TCM_030154" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28598.1" /translation="MASNLAVINFLRLCSEKVLEMRTRTFSTSIQINGGSEGYFCPTL SLLPLSYAIPSLQFPFMAIQLQVLFVLCGFHVSWARKDHVYEIYRH" gene complement(26008488..26011242) /locus_tag="TCM_030155" /note="dbxref CacaoGD:Thecc1EG030155" mRNA complement(join(26008488..26008723,26009252..26009388, 26009587..26010226,26010425..26011242)) /locus_tag="TCM_030155" /product="PPDK regulatory protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012626001" /inference="similar to AA sequence:Phytozome:POPTR_0004s02210.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc50t6" mRNA complement(join(26008912..26009388,26009587..26010187, 26010425..26010948)) /locus_tag="TCM_030155" /product="PPDK regulatory protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012626001" /inference="similar to AA sequence:Phytozome:POPTR_0004s02210.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc58t4; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc50t6" CDS complement(join(26009285..26009388,26009587..26010187, 26010425..26010862)) /locus_tag="TCM_030155" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="PPDK regulatory protein, putative isoform 2" /protein_id="EOY28600.1" /db_xref="Phytozome:POPTR_0004s02210.1" /db_xref="TAIR:AT4G21210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49562" /translation="MVELKTKMLACSTFNLRAAATSANPNISEPEPEPKVRKLKASPQ LNRWYRARALRSGHKLERSSQPAGPLEVNRSVQRTRESPSSESTSTVSDGDRDVEFTP GKPIYMVSDGTGWTVEHSVNAALGQFEHCLVDRVCPVNTHLFSGAAKEGAMLVYTLAD PSMAESANQACKLWGIPSTDVLGPITESIAAHLGVSPSGLPRGAPGRNFPLSDEYFRR IEAVEFTIKQDDGALPQNLCRADIVLTGVSRTGKTPLSIYLAQKGYKVANVPIVKGVA LPKGLFEVDPEKVFGLTINPLVLQTIRKARAKSLGFSEEARSNYSEMDYVKQELEFAR RVFAQNPVWPVIEVTGKAIEETAAVILRLYHDRKHKCSMPRISKRY" CDS complement(join(26009285..26009388,26009587..26010226, 26010425..26010862)) /locus_tag="TCM_030155" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="PPDK regulatory protein isoform 1" /protein_id="EOY28599.1" /db_xref="Phytozome:POPTR_0004s02210.1" /db_xref="TAIR:AT4G21210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49562" /translation="MVELKTKMLACSTFNLRAAATSANPNISEPEPEPKVRKLKASPQ LNRWYRARALRSGHKLERSSQPAGPLEVNRSVQRTRESPSSESTSTVSDGDRDVEFTP GKPIYMVSDGTGWTVEHSVNAALGQFEHCLVDRVCPVNTHLFSGIDDVETLMEIIKQA AKEGAMLVYTLADPSMAESANQACKLWGIPSTDVLGPITESIAAHLGVSPSGLPRGAP GRNFPLSDEYFRRIEAVEFTIKQDDGALPQNLCRADIVLTGVSRTGKTPLSIYLAQKG YKVANVPIVKGVALPKGLFEVDPEKVFGLTINPLVLQTIRKARAKSLGFSEEARSNYS EMDYVKQELEFARRVFAQNPVWPVIEVTGKAIEETAAVILRLYHDRKHKCSMPRISKR Y" mRNA complement(join(<26009338..26009388,26009587..26010190, 26010425..26010948)) /locus_tag="TCM_030155" /product="PPDK regulatory protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012626001" /inference="similar to AA sequence:Phytozome:POPTR_0004s02210.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc50t4; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc50t6" CDS complement(join(<26009339..26009388,26009587..26010190, 26010425..26010862)) /locus_tag="TCM_030155" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="PPDK regulatory protein isoform 3" /protein_id="EOY28601.1" /db_xref="Phytozome:POPTR_0004s02210.1" /db_xref="TAIR:AT4G21210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49562" /translation="MVELKTKMLACSTFNLRAAATSANPNISEPEPEPKVRKLKASPQ LNRWYRARALRSGHKLERSSQPAGPLEVNRSVQRTRESPSSESTSTVSDGDRDVEFTP GKPIYMVSDGTGWTVEHSVNAALGQFEHCLVDRVCPVNTHLFSGQAAKEGAMLVYTLA DPSMAESANQACKLWGIPSTDVLGPITESIAAHLGVSPSGLPRGAPGRNFPLSDEYFR RIEAVEFTIKQDDGALPQNLCRADIVLTGVSRTGKTPLSIYLAQKGYKVANVPIVKGV ALPKGLFEVDPEKVFGLTINPLVLQTIRKARAKSLGFSEEARSNYSEMDYVKQELEFA RRVFAQNPVWPVIEVTGKAIEETAAVILRL" gene complement(26011368..26018542) /locus_tag="TCM_030156" /note="dbxref CacaoGD:Thecc1EG030156" mRNA complement(join(26011368..26011876,26011972..26012293, 26014365..26014813,26017744..26017850,26018148..26018542)) /locus_tag="TCM_030156" /product="Gibberellin 2-oxidase 8 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s02200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011301t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012628001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:PASA:2:TSA:puevd3b029169t1a2; alternateUTRof:Thecc1EG030156t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8184t1" mRNA complement(join(26011401..26011876,26011972..26012293, 26014365..26014813,26017744..26017850,26018152..26018322)) /locus_tag="TCM_030156" /product="Gibberellin 2-oxidase 8 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s02200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011301t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012628001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8184t1" CDS complement(join(26011646..26011876,26011972..26012293, 26014365..26014813,26017744..26017782)) /locus_tag="TCM_030156" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011301t1" /codon_start=1 /product="Gibberellin 2-oxidase 8 isoform 1" /protein_id="EOY28602.1" /db_xref="Phytozome:GSVIVT01012628001" /db_xref="TAIR:AT4G21200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49561" /translation="MVDTHNLMANINQPLGMDSDPPFHETYKTLFANSIIKSSPSNDD PGDTVEERELPLIDLSRLGLGGELEREGCKKEIARAAHEWGFFQVINHGISRDILETM REEQVKVFKQPFHNKFRCFSAGSYRWGTPTATSLRQLSWSEAFHIPMTDISTPGGFDT TLSSPMEQFATKVASLAQELAEILAEKLGHKSTFFQENCLPSTCYLRLNRYPPCPIAL EMFGLMPHTDSDFLTILHQDQVGGLRLVKDGKWIAVKPNPEALIINIGDLFQAWSNLF YKSVQHCVVTNPSKERFSAAYFLCPSYETVIESCSKPSVYRKFSFREYRQQVQEDVQK YGYKVGLPRFLV" CDS complement(join(26011646..26011876,26011972..26012293, 26014365..26014813,26017744..26017782)) /locus_tag="TCM_030156" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011301t1" /codon_start=1 /product="Gibberellin 2-oxidase 8 isoform 1" /protein_id="EOY28603.1" /db_xref="Phytozome:GSVIVT01012628001" /db_xref="TAIR:AT4G21200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49561" /translation="MVDTHNLMANINQPLGMDSDPPFHETYKTLFANSIIKSSPSNDD PGDTVEERELPLIDLSRLGLGGELEREGCKKEIARAAHEWGFFQVINHGISRDILETM REEQVKVFKQPFHNKFRCFSAGSYRWGTPTATSLRQLSWSEAFHIPMTDISTPGGFDT TLSSPMEQFATKVASLAQELAEILAEKLGHKSTFFQENCLPSTCYLRLNRYPPCPIAL EMFGLMPHTDSDFLTILHQDQVGGLRLVKDGKWIAVKPNPEALIINIGDLFQAWSNLF YKSVQHCVVTNPSKERFSAAYFLCPSYETVIESCSKPSVYRKFSFREYRQQVQEDVQK YGYKVGLPRFLV" mobile_element complement(26016549..26016710) /note="source:INTACT639F_F363_scaffold_5-int 8388 8573" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(26016705..26017059) /note="source:INTACT639F_F363_scaffold_5-int 7469 7818" /mobile_element_type="retrotransposon:LTR/Copia" gene 26022182..26025414 /locus_tag="TCM_030157" /note="dbxref CacaoGD:Thecc1EG030157" mRNA join(26022182..26022500,26022584..26022646, 26022732..26022798,26022942..26023001,26023175..26023225, 26023328..26023408,26023838..26023950,26024043..26024160, 26024353..26024479,26024854..26025414) /locus_tag="TCM_030157" /product="Chaperone DnaJ-domain superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s02180.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s02180.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03063t00001" CDS join(26022373..26022500,26022584..26022646, 26022732..26022798,26022942..26023001,26023175..26023225, 26023328..26023408,26023838..26023950,26024043..26024160, 26024353..26024479,26024854..26024957) /locus_tag="TCM_030157" /codon_start=1 /product="Chaperone DnaJ-domain superfamily protein" /protein_id="EOY28604.1" /db_xref="Phytozome:POPTR_0004s02180.1" /db_xref="TAIR:AT1G61770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GUN6" /translation="MKTMAPPAAIRWCAVLSTLVLFLLISPSVAIYCDEDDCYDLLGV SQNANVSEIKKAYYKLSLKYHPDKNPDPDSRKLFVKIANAYEILKDEATREQYDYAIA HPEEVFYNTARYYRAYYGHKTDPRAVLVGLLLILSAFQYLNRWTRYNQAVAMVKKTPA YKNRLRALELERSGGTTNKKKSNKQMDKKKEEDLSKELELDIKGAEKPSIWELIGIRF ILLPYTIGKLLLWYACWFWRYKVKRAPYSWEDASYLTRNSLRVPLDAWLNIDESTKED LIQRRLWIKSNLESYLAEMRKEYKRRR" gene 26025484..26031037 /locus_tag="TCM_030158" /note="dbxref CacaoGD:Thecc1EG030158" mRNA join(26025484..26025667,26025775..26025816, 26025888..26026067,26026149..26026409,26026486..26026647, 26026738..26026798,26027002..26027078,26027161..26027418, 26027962..26028051,26028189..26028323,26028607..26028756, 26029153..26029246,26029335..26029388) /locus_tag="TCM_030158" /product="Tyrosyl-DNA phosphodiesterase-related isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012630001" /inference="similar to AA sequence:Phytozome:GSVIVT01012630001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1029t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8208t4" mRNA join(26025529..26025667,26025775..26025816, 26025888..26026067,26026149..26026409,26026486..26026647, 26026738..26026798,26027002..26027078,26027161..26027418, 26027962..26028051,26028189..26028323,26028607..26028756, 26029143..26029246,26029335..26029388,26029469..26029559, 26029812..26029892,26030004..26030148,26030239..26031037) /locus_tag="TCM_030158" /product="Tyrosyl-DNA phosphodiesterase-related isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012630001" /inference="similar to AA sequence:Phytozome:GSVIVT01012630001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8208t4" mRNA join(26025707..26025816,26025888..26026067, 26026149..26026409,26026486..26026647,26026738..26026798, 26027002..26027078,26027161..26027418,26027962..26028051, 26028189..26028323,26028607..26028756,26029143..26029246, 26029335..26029559,26029810..26029892,26030004..26030148, 26030239..26030317) /locus_tag="TCM_030158" /product="Tyrosyl-DNA phosphodiesterase-related isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012630001" /inference="similar to AA sequence:Phytozome:GSVIVT01012630001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8208t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8208t4" CDS join(26025802..26025816,26025888..26026067, 26026149..26026409,26026486..26026647,26026738..26026798, 26027002..26027078,26027161..26027418,26027962..26028051, 26028189..26028323,26028607..26028756,26029143..26029246, 26029335..26029388,26029469..26029559,26029812..26029892, 26030004..26030148,26030239..26030312) /locus_tag="TCM_030158" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tyrosyl-DNA phosphodiesterase-related isoform 1" /protein_id="EOY28605.1" /db_xref="Phytozome:GSVIVT01012630001" /db_xref="TAIR:AT5G15170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CVK9" /translation="MPRSQIGYLVPVNKNLEESASLPKLPLFYGPNFIGRDDVSVPDK RLSRKHIALTTSPDGSAHLLVEGTNPVVVRSGELRKKLSSRENAAINNGDIIELIPGH HFFKYVSSSTGEKKRSFGEANSDGESEKLTAKRNRNQRPEYKAKSANKLKEEEEDNNK GKIFVEAIRDFCVSNDELPHTFRLLKVQGLPAWANANCVSIGDVIQGDVLLAVLSNYM VDIDWLHSACPKLAKIPNVLVIHGEGDSRLDHMKRDKPSNWILHKPPLPISFGTHHSK AMLLVYPQGVRVIVHTANLIYVDWNNKSQGLWMQDFPWKDQNNSKKGCGFENDLIDYL STLKWPEFTANFPALGNFNINSTFFKKFDYSNARVRLIASVPGYHTGPNLKKWGHMKL RSVLQECVFNKEFQKSPLVYQFSSLGSLDEKWMAELASSMSSGYSEDKAPLGLGEPLI IWPSVEDVRCSLEGYAAGSAVPSPLKNVEKGFLKNYWAKWKASHSGRCRAMPHIKTYT RYKGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLFLPSHVKEEGGEFSCT GNGGSSKGSGRCGSIGNSEVTKTKLVTLAWQGSKTSEVIQLPVPYELPPKPYSSEDIP WSWERRYNKKDVHGQVWPRLV" CDS join(26025802..26025816,26025888..26026067, 26026149..26026409,26026486..26026647,26026738..26026798, 26027002..26027078,26027161..26027418,26027962..26028051, 26028189..26028323,26028607..26028756,26029143..26029246, 26029335..26029392) /locus_tag="TCM_030158" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tyrosyl-DNA phosphodiesterase-related isoform 2" /protein_id="EOY28606.1" /db_xref="Phytozome:GSVIVT01012630001" /db_xref="TAIR:AT5G15170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CVK9" /translation="MPRSQIGYLVPVNKNLEESASLPKLPLFYGPNFIGRDDVSVPDK RLSRKHIALTTSPDGSAHLLVEGTNPVVVRSGELRKKLSSRENAAINNGDIIELIPGH HFFKYVSSSTGEKKRSFGEANSDGESEKLTAKRNRNQRPEYKAKSANKLKEEEEDNNK GKIFVEAIRDFCVSNDELPHTFRLLKVQGLPAWANANCVSIGDVIQGDVLLAVLSNYM VDIDWLHSACPKLAKIPNVLVIHGEGDSRLDHMKRDKPSNWILHKPPLPISFGTHHSK AMLLVYPQGVRVIVHTANLIYVDWNNKSQGLWMQDFPWKDQNNSKKGCGFENDLIDYL STLKWPEFTANFPALGNFNINSTFFKKFDYSNARVRLIASVPGYHTGPNLKKWGHMKL RSVLQECVFNKEFQKSPLVYQFSSLGSLDEKWMAELASSMSSGYSEDKAPLGLGEPLI IWPSVEDVRCSLEGYAAGSAVPSPLKNVEKGFLKNYWAKWKASHSGRCRAMPHIKTYT RYKGQKLA" CDS join(26025802..26025816,26025888..26026067, 26026149..26026409,26026486..26026647,26026738..26026798, 26027002..26027078,26027161..26027418,26027962..26028051, 26028189..26028323,26028607..26028756,26029153..26029203) /locus_tag="TCM_030158" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Tyrosyl-DNA phosphodiesterase-related isoform 3" /protein_id="EOY28607.1" /db_xref="Phytozome:GSVIVT01012630001" /db_xref="TAIR:AT5G15170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E0CVK9" /translation="MPRSQIGYLVPVNKNLEESASLPKLPLFYGPNFIGRDDVSVPDK RLSRKHIALTTSPDGSAHLLVEGTNPVVVRSGELRKKLSSRENAAINNGDIIELIPGH HFFKYVSSSTGEKKRSFGEANSDGESEKLTAKRNRNQRPEYKAKSANKLKEEEEDNNK GKIFVEAIRDFCVSNDELPHTFRLLKVQGLPAWANANCVSIGDVIQGDVLLAVLSNYM VDIDWLHSACPKLAKIPNVLVIHGEGDSRLDHMKRDKPSNWILHKPPLPISFGTHHSK AMLLVYPQGVRVIVHTANLIYVDWNNKSQGLWMQDFPWKDQNNSKKGCGFENDLIDYL STLKWPEFTANFPALGNFNINSTFFKKFDYSNARVRLIASVPGYHTGPNLKKWGHMKL RSVLQECVFNKEFQKSPLVYQFSSLGSLDEKWMAELASSMSSGYSEDKAPLGLGEPLI IWPSVEDVRCSLELEVQFQVHLRMWKKDS" gene 26031424..26032547 /locus_tag="TCM_030159" /note="dbxref CacaoGD:Thecc1EG030159" mRNA 26031424..26032547 /locus_tag="TCM_030159" /product="Ubiquitin, putative" /inference="alignment:exonerate-protein:2:frave:gene19551" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044421t1" /inference="similar to AA sequence:ricco:29842.m003648" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1419t1" CDS 26031518..26032324 /locus_tag="TCM_030159" /note="dbxref ricco:29842.m003648; paralog of Thecc1EG044421t1" /codon_start=1 /product="Ubiquitin, putative" /protein_id="EOY28608.1" /db_xref="TAIR:AT4G05230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXR6" /translation="MDVTFECQRGRSFSIEVGFFDTVLEIKEKVQKYQGIPISRQTLV FNGQVLQDERDVEYCEILQNSSIQLLVAPEADKPQVVKTEKSSPSKKLQLKINIPSSK ASIPLEMDVNDTVLRLKEKIREMEPVPVNRLVVQSSGAELQDHLSLRDCELPDNTEID VNIKPSPTGSGTGSAGATTGTKRLLKVMVLPKCGTKKIPVEVNASDNVAELRKELQKL QQRLQFHLPQEGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGGS" gene 26034070..26035874 /locus_tag="TCM_030160" /note="dbxref CacaoGD:Thecc1EG030160" mRNA 26034070..26035874 /locus_tag="TCM_030160" /product="Polyubiquitin 10" /inference="alignment:exonerate-protein:2:frave:gene19551" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031077t1" /inference="similar to AA sequence:frave:gene03175" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9336t1" CDS 26034076..26035221 /locus_tag="TCM_030160" /note="dbxref frave:gene03175; paralog of Thecc1EG031077t1" /codon_start=1 /product="Polyubiquitin 10" /protein_id="EOY28609.1" /db_xref="TAIR:AT4G05320.4" /db_xref="UniProtKB/TrEMBL:UniRef50_P0CG48" /translation="MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTL TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST LHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK QLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF" gene 26040276..26041218 /locus_tag="TCM_030163" /note="dbxref CacaoGD:Thecc1EG030163" mRNA join(26040276..26040363,26040689..26040773, 26040847..26041218) /locus_tag="TCM_030163" /product="Homeodomain-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s02060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046858t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s02060.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00873t00004" CDS join(26040312..26040363,26040689..26040773, 26040847..26040934) /locus_tag="TCM_030163" /note="paralog of Thecc1EG046858t1" /codon_start=1 /product="Homeodomain-like superfamily protein" /protein_id="EOY28610.1" /db_xref="Phytozome:POPTR_0004s02060.1" /translation="MGDSEHSSSGDTFVDSREVTSRESKVKFSNDEETLIIRMYNLVG ERWALIAGRIPGRTAKEIEEYWNTRCSTSE" gene complement(26041806..26043082) /locus_tag="TCM_030164" /note="dbxref CacaoGD:Thecc1EG030164" mRNA complement(join(26041806..26041984,26042076..26042167, 26042769..26042886,26043008..26043082)) /locus_tag="TCM_030164" /product="Postsynaptic protein-related isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g39770.1" /inference="similar to AA sequence:Phytozome:Glyma20g27960.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16968t1" mRNA complement(join(26041823..26042002,26042076..26042167, 26042769..26043035)) /locus_tag="TCM_030164" /product="Postsynaptic protein-related isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g39770.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc356t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16968t1" CDS complement(join(26041832..26042002,26042076..26042111)) /locus_tag="TCM_030164" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Postsynaptic protein-related isoform 2" /protein_id="EOY28612.1" /translation="MRSTVTPVLIPKVLCVVQGYVQCAVSKCLTPSFTSRAMYNIEGD IGWSSSRYHSCPLSLITHQLGQRL" CDS complement(join(26041920..26041984,26042076..26042167, 26042769..26042886,26043008..26043023)) /locus_tag="TCM_030164" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Postsynaptic protein-related isoform 1" /protein_id="EOY28611.1" /db_xref="Phytozome:Glyma20g27960.1" /db_xref="TAIR:AT1G61780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9P021" /translation="MVCEKCQRKLSKVIVPDKWKEGATNTTESGGRKINENKLLSKKH RWTPYGNTKCMICKQQVHQDAKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV" gene complement(26043666..26045282) /locus_tag="TCM_030165" /note="dbxref CacaoGD:Thecc1EG030165" mRNA complement(join(26043666..26044306,26044495..26044697, 26044788..26044888,26044973..26045282)) /locus_tag="TCM_030165" /product="Xyloglucan endotransglucosylase/hydrolase 8" /inference="alignment:exonerate- protein:2:ricco:29842.m003641" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000870t1" /inference="similar to AA sequence:ricco:29842.m003641" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11591t00001" CDS complement(join(26043904..26044306,26044495..26044697, 26044788..26044888,26044973..26045165)) /locus_tag="TCM_030165" /note="dbxref ricco:29842.m003641; paralog of Thecc1EG000870t1" /codon_start=1 /product="Xyloglucan endotransglucosylase/hydrolase 8" /protein_id="EOY28613.1" /db_xref="TAIR:AT1G11545.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1G2" /translation="MKIRVSPMASLLFIAVLISAICSSSEAAGSQTSFEDNFSIMWSE DHFKTSDDGQTWFLSLDKETGCGFQTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCSE NGAGPERDELDFEFLGNRTGQPYLIQTNVYKNGVGGREMRHMLWFDPTEGFHSYSVLW NSQQILFFVDRVPIRVYKNNGKENGFFPNEKPMYLFSSIWNADDWATRGGLEKTDWKR APFVSSYKDFSVEGCQWEDPYPACVSTTTKNWWDQYDAWHLSDSQKMDYAWVQRNLVI YDYCKDYERYPQLPEECSLSPWD" gene 26046907..26048851 /locus_tag="TCM_030166" /note="dbxref CacaoGD:Thecc1EG030166" mRNA join(26046907..26048390,26048481..26048851) /locus_tag="TCM_030166" /product="Thiazole biosynthetic enzyme" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s00500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031067t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s01990.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08172t00001" CDS join(26047395..26048390,26048481..26048648) /locus_tag="TCM_030166" /note="paralog of Thecc1EG031067t1" /codon_start=1 /product="Thiazole biosynthetic enzyme" /protein_id="EOY28614.1" /db_xref="Phytozome:POPTR_0004s01990.1" /db_xref="TAIR:AT5G54770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38814" /translation="MPHVDTQSLITPHRISFIYHTKAPQNTPLQSMAAITATLPSLSS SPKPSFLDHKSSFHGTPIASRFTPIRSSSQDSAISMSLNTPPYDLQSFNFQPIKESYV AREMTRRYMMDMITYADTDVIIVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAW LGGQLFSAMVVRKPAHIFLDELGIQYDEQENYVVIKHAALFTSTIMSKLLARPNVKLF NAVAAEDLIVKDNRVAGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAT GVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGP TFGAMMISGQKAAHLALKALGQPNAIDGTFIEGGRVQPEFVLAAAETEGTVDA" gene complement(26048708..26050522) /locus_tag="TCM_030167" /note="dbxref CacaoGD:Thecc1EG030167" mRNA complement(26048708..26050522) /locus_tag="TCM_030167" /product="UDP-Glycosyltransferase superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene00095" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022335t1" /inference="similar to AA sequence:ricco:30078.m002239" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8346t1" CDS complement(26048976..26050457) /locus_tag="TCM_030167" /note="dbxref ricco:30078.m002239; paralog of Thecc1EG022335t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein" /protein_id="EOY28615.1" /db_xref="TAIR:AT2G36780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZQ94" /translation="MASESAELHFVLVPLMFPGHLLPMVDMGRVLAQHGVTVTVVTTP LNALRFKSILDRDIASGVQVRLLQLRFPCVEANLPEGCENIDALPSQLLFKNFMDAVG MLQQRLEQLLEETQPEPSCIVSDRQLPWTINVAEKFRIPRLVFNGTSCFTVVCSHFIG ISQIREKVSDDLEPFVVPGLPDRIELTKAQLPVNFKPGSVVSKDKEEQLRAADVASYG LVVNSFEELESGYVEEYRKVKGDKIWCIGPVSLLNKGEIDKAQRGSKAFVDVSQYLQW LDSWPQNSVVYACFGTLSNVAPEQLIELALGLEASNRPFIWVIRDGNKSDEFKKWVSE EGFEERIKGRGLLIHGWAPQVLILSHPAVGGLLTHCGWNSVLEGVAAGLPMVTWPLSA DQFFNEKLVVQVLRIGERVGAEIAMRRGEEEKYGAMIKREQIVKAIDSVMDAGGEGEE RRKRARELGELAKKAFENGGSSYLNVNRLIKDIMQVSGKKAQE" gene 26050797..26053090 /locus_tag="TCM_030168" /note="dbxref CacaoGD:Thecc1EG030168" mRNA 26050797..26053090 /locus_tag="TCM_030168" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29842.m003640" /inference="similar to AA sequence:ricco:29842.m003640" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1104t1" CDS 26050890..26052626 /locus_tag="TCM_030168" /note="dbxref ricco:29842.m003640" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY28616.1" /db_xref="TAIR:AT4G21170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1G1" /translation="MHDSHCSHRFIKPFSTLTTTRTTYSSSDWRAQIKQSQLVSQVSS ILLQRHNWASLLRTLNLRSKLTPVLFLQILHKTQHHPQISLTFFNWVKTHLGFKPDLK SQCHIIQIVIGSDLCRCVEPAVNSLIQSHPAPIVADSMIQACKGKNFQSSALSSVIKC YSKHGLFMEGLEVFRKMRIHGFTPSVCACNELLDALQRGNEVKLAWGFLGAMLRVGIE PDQFSWSLVAQILCKNGKLGKVVGLLEKGIYNSEIYDLVIDFYSKSGDFGAAFNRLNE MYNRKVDTSFCTYSSILDGACKYNDGEVIGRILRMMVEKELVPRHQFSKKDLIIPKLC DLRKTHAAEMLFKKACDENIRLRNDTYGSMLKALSQEARIDEAIEVCRMILKRRIIVN ESCYSAFINALCKEDQSDDGYELLVDIIKRGHNPCASKLSKYISSQCSQMNWRKAEEL LDLMLEKGLLPDSFGCCLLIQYYCFNRQVDKIVALHDKMEKVKGCLDVTTYNMILDVL WGERKAEEAVRVYDYMTGLNLVDSASFTIMIRELCHMKEMKKAMKIHDEMLNMGLKPD KGTYKRLISGFK" gene 26052946..26055289 /locus_tag="TCM_030169" /note="dbxref CacaoGD:Thecc1EG030169" mRNA 26052946..26055289 /locus_tag="TCM_030169" /product="Tumor suppressor candidate, putative isoform 1" /inference="similar to AA sequence:ricco:29842.m003639" /note="transcript variant 1; alternatively spliced; quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage" mRNA join(26053008..26054141,26054221..26054777) /locus_tag="TCM_030169" /product="Tumor suppressor candidate, putative isoform 2" /inference="similar to AA sequence:ricco:29842.m003639" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc556t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8466t1" CDS 26053317..26054345 /locus_tag="TCM_030169" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003639" /codon_start=1 /product="Tumor suppressor candidate, putative isoform 1" /protein_id="EOY28617.1" /db_xref="TAIR:AT1G61790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXQ7" /translation="MAISATHLFLVSFITLSLFLVISKAESESELVADLLALQSESKS GVIHLDDRTVSKFLTSPKTPRPYSFVIFFDATQLHDKSELHLRELRNEFALVASSFIT NNNSSNTKLFFCDIEFRESQSSFHLFGVNSLPHIRLVGPTAKSLKDDSEQMDQGDFSR MAESMAEFIESRTKLTVGPIHRPPILSKKQLALIAALLLIWSPFVAKKIFAGQTLLHD PKIWLSGAVFVYFFSVSGAMHNIIRKMPMFLVDRNDPNKLVFFYQGSGMQLGAEGFAV GFLYTIVGLLLAFVTHVLVYVKDATAKRVAMLVAIFVSFWAVKKVIFLDNWKTGYGVH GFWPSSWN" CDS join(26053317..26054141,26054221..26054271) /locus_tag="TCM_030169" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003639" /codon_start=1 /product="Tumor suppressor candidate, putative isoform 2" /protein_id="EOY28618.1" /db_xref="TAIR:AT1G61790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXQ7" /translation="MAISATHLFLVSFITLSLFLVISKAESESELVADLLALQSESKS GVIHLDDRTVSKFLTSPKTPRPYSFVIFFDATQLHDKSELHLRELRNEFALVASSFIT NNNSSNTKLFFCDIEFRESQSSFHLFGVNSLPHIRLVGPTAKSLKDDSEQMDQGDFSR MAESMAEFIESRTKLTVGPIHRPPILSKKQLALIAALLLIWSPFVAKKIFAGQTLLHD PKIWLSGAVFVYFFSVSGAMHNIIRKMPMFLVDRNDPNKLVFFYQGSGMQLGAEGFAP SVWRCLLRFSFRSGR" gene 26057052..26057710 /locus_tag="TCM_030170" /note="dbxref CacaoGD:Thecc1EG030170" mRNA join(26057052..26057383,26057474..26057710) /locus_tag="TCM_030170" /product="NTF2-like" /inference="alignment:exonerate-protein:2:frave:gene19568" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008734t1" /inference="similar to AA sequence:frave:gene19568" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13086t00001" CDS join(26057081..26057383,26057474..26057548) /locus_tag="TCM_030170" /note="dbxref frave:gene19568; paralog of Thecc1EG008734t1" /codon_start=1 /product="NTF2-like" /protein_id="EOY28619.1" /db_xref="TAIR:AT1G11570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C7F5" /translation="MEEQVDLVGKAFVDHYYHLFDNDRPALSSLYQPTSMLTFEGQKI QGVDDIAAKLNQLPFDQCRHEISTIDSQPCSFTGGIVVFVSGSLQLPGEEHHLRFSQM FHLIPMLQGSFFVQNDIFRLNYG" mobile_element 26058673..26058770 /note="source:scaffold_9_CACTA_0936 326 427" /mobile_element_type="transposon:TIR/CACTA" gene 26059717..26062534 /locus_tag="TCM_030171" /note="dbxref CacaoGD:Thecc1EG030171" mRNA join(26059717..26060809,26060911..26062534) /locus_tag="TCM_030171" /product="Pectinesterase/pectinesterase inhibitor, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s00480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029251t1" /inference="similar to AA sequence:ricco:29842.m003636" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8358t1" CDS join(26059870..26060809,26060911..26061602) /locus_tag="TCM_030171" /note="dbxref ricco:29842.m003636; paralog of Thecc1EG029251t1" /codon_start=1 /product="Pectinesterase/pectinesterase inhibitor, putative" /protein_id="EOY28620.1" /db_xref="TAIR:AT1G11580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P83947" /translation="MATAHQPLLHRPKTSKVLPLIFSIAAIVCTAALVTIRLVKISSF TPLPDQVCLGAVDQKSCSALLSEVASNSTIKMKGVDVLHAFLEKSTAQMQNAINLANN FKHRINNPRDQAALADCLELMESSMDRIADSMVALGKKDVDSHSDAHAWLSSVLTNHV TCLDGVQGSARTLMEPGLNDLISRARTSLAVFVSISPGKTRFVDPSIDEFPSWVSSKD RKLLQALLNEIKANVVVAKDGSGNYKTLAEAVAAAPDKSKIRYIIHVKNGTYKENVEI GKKKKNLMIVGDGMNSTIITGSLNFVDGTTTFKSATVAAVGDGFIAQDIWFQNTAGPE KHQAVALRVGADQSVINRCKIDAYQDTLYTHSNRQFYRDSYVTGTVDFIFGNAAVVFQ NCKLVARKPMSSQSNMVTAQGRTDPNQNTGTFIQNCNIIASADLRPVKASIKSYLGRP WKEYSRTVVMQSYIADHIDPSGWSIWNGDFALKTLYYGEYMNRGPGAGTCKRVKWPGY RILTKAEEAKPFTVAELIQGGSWLKSTGVAYTEGL" gene 26062767..26065952 /locus_tag="TCM_030172" /note="dbxref CacaoGD:Thecc1EG030172" mRNA join(26062767..26063324,26063595..26063748, 26063910..26064007,26064128..26064224,26065024..26065952) /locus_tag="TCM_030172" /product="ROP-interactive CRIB motif-containing protein 10" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012640001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003973t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012640001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13583t00001" mobile_element 26063388..26063428 /note="source:scaffold_9_CACTA_0929 5853 5892" /mobile_element_type="transposon:TIR/CACTA" CDS join(26063691..26063748,26063910..26064007, 26064128..26064224,26065024..26065226) /locus_tag="TCM_030172" /note="paralog of Thecc1EG003973t1" /codon_start=1 /product="ROP-interactive CRIB motif-containing protein 10" /protein_id="EOY28621.1" /db_xref="Phytozome:GSVIVT01012640001" /translation="MATKIKGIYKGFKFISQIFVVKEREMEIGYPTDVKHVAHIGWDG PSGTAPSWMNEFKTGPDFTATSIGNSRGSNPTALSTWSSQDFEQSLGCEPATQMIRDL SSADLPNIPKKQKRKKKTTSSPKSSSKSSRTSKTKAIYTQLGSSTGLET" gene 26066087..26069547 /locus_tag="TCM_030173" /note="dbxref CacaoGD:Thecc1EG030173" mRNA join(26066087..26066235,26066488..26067052, 26067150..26067441,26067562..26068059,26068154..26069547) /locus_tag="TCM_030173" /product="COBRA-like protein 10 precursor, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012641001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031066t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012641001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8366t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8364t1" CDS join(26066185..26066235,26066488..26067052, 26067150..26067441,26067562..26068059,26068154..26068565) /locus_tag="TCM_030173" /note="paralog of Thecc1EG031066t1" /codon_start=1 /product="COBRA-like protein 10 precursor, putative" /protein_id="EOY28622.1" /db_xref="Phytozome:GSVIVT01012641001" /db_xref="TAIR:AT3G20580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LJU0" /translation="MAANCIPSKYIANLKEESKEDVKLSWKVLGFMLFQFCSTSHFCL AQDYDTEAQPTLPEGQENCNGIFVSYNFISRTKEYPHVKNATAQAWAFKATATIMNTG TYVLQAWKIFIGFQYKEILVSAGGAVLTNGGDFPAAVGNGTFISGYPQSDLETSIDTA GDFNQIQAQIELSGTQFGLRPPRIPMPKTIKLVNDGYKCPAPTHRKTAMYVCCVRNPK YKAKDLKTKFLPRQKGDLSISYDVTQAYGNNYLAQVTIENSNPLGRLDHWNLTWEWMR GEFIYSMKGAYVREVDTAGCINGLAGQNGTLLPETMDGSKSESVFQVQVFKLPPDLNR TAIYPPQKWKIVGVLNPDYKCGPPIRVDPTQFPDPSGLQATKDALASWQVVCNISRPT EGNFKCCVSFSAYYDESVIPCDTFACGCEDTEKCNPKKPAMLLPAEALLVPFANRSAK ARAWAALKQAFSSPQAIALINFENWFTVIQFKKAGSGYEKLYSFNGTLLTKLNNTIFI QGLPGLNYLMGEVNGSNPKRDPNVPGKQQSVISFKKKRKHGINIAEGDGFPSRVFFNG EECALPTRLPIGSGNRCRLHLVLVLLFTIMSLLFIEIHN" gene 26069937..26070729 /locus_tag="TCM_030174" /note="dbxref CacaoGD:Thecc1EG030174" mRNA 26069937..26070729 /locus_tag="TCM_030174" /product="Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative" /inference="alignment:exonerate-protein:2:frave:gene21739" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011328t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s00510.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS 26070017..26070571 /locus_tag="TCM_030174" /note="paralog of Thecc1EG011328t1" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative" /protein_id="EOY28623.1" /db_xref="Phytozome:POPTR_0011s00510.1" /translation="MGKWKICCGVTAILFIIVVVVFVILTFTLFKPKDPKITPQSVSL KSIDLVVFPVIKGNVSLGLVVTVDNPNYGGFKYMNSTAYVNYRGNLVGEASIESDSIP ARAKHNMSTTVIIFADRLATDPNFLTDFLGGVLNFTSSTILHGTVRVLNLLKLKASSS SSCNISILVQTESVDSVCKAKIRL" gene 26075377..26081130 /locus_tag="TCM_030175" /note="dbxref CacaoGD:Thecc1EG030175" mRNA join(26075377..26075956,26076736..26076996, 26077130..26077247,26077478..26077666,26077760..26078197, 26078292..26078393,26078558..26078758,26078854..26079028, 26079153..26079424,26079805..26079900,26080006..26080381, 26080500..26080806) /locus_tag="TCM_030175" /product="Protodermal factor 2 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene19572" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011330t2" /inference="similar to AA sequence:Phytozome:GSVIVT01012643001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc557t2" mRNA join(26075488..26075956,26076709..26076996, 26077130..26077247,26077478..26077666,26077760..26078197, 26078292..26078393,26078558..26078758,26078854..26079028, 26079153..26079424,26079805..26079900,26080006..26080381, 26080500..26081120) /locus_tag="TCM_030175" /product="Protodermal factor 2 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene19572" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011330t2" /inference="similar to AA sequence:Phytozome:GSVIVT01012643001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8413t1; alternateUTRof:Thecc1EG030175t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc557t2" mRNA join(26076635..26076996,26077130..26077247, 26077478..26077666,26077760..26078197,26078292..26078393, 26078558..26078758,26078854..26079028,26079153..26079424, 26079805..26079900,26080006..26080381,26080500..26081130) /locus_tag="TCM_030175" /product="Protodermal factor 2 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene19572" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011330t2" /inference="similar to AA sequence:Phytozome:GSVIVT01012643001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc549t4; alternateUTRof:Thecc1EG030175t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc557t2" CDS join(26076779..26076996,26077130..26077247, 26077478..26077666,26077760..26078197,26078292..26078393, 26078558..26078758,26078854..26079028,26079153..26079424, 26079805..26079900,26080006..26080359) /locus_tag="TCM_030175" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011330t2" /codon_start=1 /product="Protodermal factor 2 isoform 1" /protein_id="EOY28624.1" /db_xref="Phytozome:GSVIVT01012643001" /db_xref="TAIR:AT4G04890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWU4" /translation="MFSPNLFDSPHMFDMTHKTSEGELGKIRDDDYETKSGTETMDVP SGDEQDPNQRPKKKRYHRHTQLQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKF WFQNKRTQMKAQHERHENAILKAENEKLRAENNRYKEALSNATCPNCGGPAALGEMSF DEQHLRIENARLREEIDRISGIAAKYVGKPLTSFPHISSHLHSRSLDPGASNFGTQSG FVGEMYGGGDLLRSVSGPTEADKPMIVELAVAAMEELIRMAQSGEPLWVPGEKSTDVL NEDEYLRTFPRGIGPKPLGLRSEASRESAVVIMNHVNLVEILMDVNQWSSAFCGIVSR AMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHTDGTWAVVDVS LDNLRPSPMSKCRRRPSGCLIQELPNGYSKVIWVEHVEVDDRAVHNIYRPLVNSGLAF GAKRWVATLDRQCERLASSMASNIPAGDLCVITSPEGRKSMLKLAERMVTSFCTGVGA STAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKRVFDFLRDE NSRSEWDILSNGGLVQEMAHIANGRDPGNCVSLLRVNSANSSQSNMLILQESCSDATG SYVIYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGPGLNGGGILEIGSGGSLLTV AFQILVDSVPTAKLSLGSVATVNSLIKCTVERIKAAVA" CDS join(26076779..26076996,26077130..26077247, 26077478..26077666,26077760..26078197,26078292..26078393, 26078558..26078758,26078854..26079028,26079153..26079424, 26079805..26079900,26080006..26080359) /locus_tag="TCM_030175" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011330t2" /codon_start=1 /product="Protodermal factor 2 isoform 1" /protein_id="EOY28625.1" /db_xref="Phytozome:GSVIVT01012643001" /db_xref="TAIR:AT4G04890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWU4" /translation="MFSPNLFDSPHMFDMTHKTSEGELGKIRDDDYETKSGTETMDVP SGDEQDPNQRPKKKRYHRHTQLQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKF WFQNKRTQMKAQHERHENAILKAENEKLRAENNRYKEALSNATCPNCGGPAALGEMSF DEQHLRIENARLREEIDRISGIAAKYVGKPLTSFPHISSHLHSRSLDPGASNFGTQSG FVGEMYGGGDLLRSVSGPTEADKPMIVELAVAAMEELIRMAQSGEPLWVPGEKSTDVL NEDEYLRTFPRGIGPKPLGLRSEASRESAVVIMNHVNLVEILMDVNQWSSAFCGIVSR AMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHTDGTWAVVDVS LDNLRPSPMSKCRRRPSGCLIQELPNGYSKVIWVEHVEVDDRAVHNIYRPLVNSGLAF GAKRWVATLDRQCERLASSMASNIPAGDLCVITSPEGRKSMLKLAERMVTSFCTGVGA STAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKRVFDFLRDE NSRSEWDILSNGGLVQEMAHIANGRDPGNCVSLLRVNSANSSQSNMLILQESCSDATG SYVIYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGPGLNGGGILEIGSGGSLLTV AFQILVDSVPTAKLSLGSVATVNSLIKCTVERIKAAVA" CDS join(26076779..26076996,26077130..26077247, 26077478..26077666,26077760..26078197,26078292..26078393, 26078558..26078758,26078854..26079028,26079153..26079424, 26079805..26079900,26080006..26080359) /locus_tag="TCM_030175" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG011330t2" /codon_start=1 /product="Protodermal factor 2 isoform 1" /protein_id="EOY28626.1" /db_xref="Phytozome:GSVIVT01012643001" /db_xref="TAIR:AT4G04890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWU4" /translation="MFSPNLFDSPHMFDMTHKTSEGELGKIRDDDYETKSGTETMDVP SGDEQDPNQRPKKKRYHRHTQLQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKF WFQNKRTQMKAQHERHENAILKAENEKLRAENNRYKEALSNATCPNCGGPAALGEMSF DEQHLRIENARLREEIDRISGIAAKYVGKPLTSFPHISSHLHSRSLDPGASNFGTQSG FVGEMYGGGDLLRSVSGPTEADKPMIVELAVAAMEELIRMAQSGEPLWVPGEKSTDVL NEDEYLRTFPRGIGPKPLGLRSEASRESAVVIMNHVNLVEILMDVNQWSSAFCGIVSR AMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHTDGTWAVVDVS LDNLRPSPMSKCRRRPSGCLIQELPNGYSKVIWVEHVEVDDRAVHNIYRPLVNSGLAF GAKRWVATLDRQCERLASSMASNIPAGDLCVITSPEGRKSMLKLAERMVTSFCTGVGA STAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKRVFDFLRDE NSRSEWDILSNGGLVQEMAHIANGRDPGNCVSLLRVNSANSSQSNMLILQESCSDATG SYVIYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGPGLNGGGILEIGSGGSLLTV AFQILVDSVPTAKLSLGSVATVNSLIKCTVERIKAAVA" mobile_element complement(26077290..26077366) /note="source:scaffold_1_CACTA_0016 6350 6432" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26081572..26081653) /note="source:INTACT433_F212_scaffold_1-int 3057 3139" /mobile_element_type="retrotransposon:LTR/Copia" gene 26081978..26082460 /locus_tag="TCM_030176" /note="dbxref CacaoGD:Thecc1EG030176" mRNA 26081978..26082460 /locus_tag="TCM_030176" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc500t1" CDS 26082080..26082355 /locus_tag="TCM_030176" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28627.1" /translation="MHVLVSSWCLCSDRCCSFMKRRVQKGNEFNSRFFVSTLCYNRNQ YAPSFSGSLPCCFRLQFSIQMVLMVNLQFELLFLSFFAIVSFLLINY" mobile_element 26085343..26085445 /note="source:CACAO_hAT_E2557_scaffold_6 2316 2422" /mobile_element_type="transposon:TIR/hAT" mobile_element 26085595..26085681 /note="source:scaffold_1_CACTA_0005 6267 6353" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26086086..26086338 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17337 17579" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 26086511..26086767 /note="source:INTACT687_F13_scaffold_3-int 1729 2054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26088224..26088902 /note="source:INTACT687_F13_scaffold_3-int 1296 2063" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26088863..26089301) /note="source:CACAO_Mariner_E220_scaffold_9 14792 15208" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 26089428..26091653 /locus_tag="TCM_030179" /note="dbxref CacaoGD:Thecc1EG030179" mRNA join(26089428..26089813,26089908..26090264, 26090394..26091057,26091137..26091653) /locus_tag="TCM_030179" /product="Pyridoxal-5\'-phosphate-dependent enzyme family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012644001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030977t3" /inference="similar to AA sequence:Phytozome:GSVIVT01012644001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b029190t1a2; inference alignment:Newbler:10:TSA:cgbaL_g01583t00001" mRNA join(26089428..26089813,26089908..26090264, 26090394..26090827,26090963..26091057,26091137..26091653) /locus_tag="TCM_030179" /product="Pyridoxal-5\'-phosphate-dependent enzyme family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012644001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030977t1" /inference="similar to AA sequence:ricco:29842.m003632" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01583t00001" CDS join(26089493..26089813,26089908..26090264, 26090394..26090827,26090963..26091057,26091137..26091321) /locus_tag="TCM_030179" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003632; paralog of Thecc1EG030977t1" /codon_start=1 /product="Pyridoxal-5\'-phosphate-dependent enzyme family protein isoform 1" /protein_id="EOY28628.1" /db_xref="TAIR:AT5G28237.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWQ8" /translation="MACNIKALSLNHQILSGTTVERKMGTASAANVSVVPETVTKTLP ASTTLTIKAPQPERLLIKTVDRKEINHGKFGRFGGKYVPETLMSCLGKLEAEFNLVLH DSEFQEELTTALRDYVGRETPLYFAQRLTDHYKNSRGEGPEIYLKREDLSHGGAHKIN NAIAQAMIAKRMGRKTIVAATGAGQHGVATAAACAKLSLECTIFMGATDMEKQASNVL LMKLLGAKVESVEGAFKEASSQAIREWVGNLETSYYLTGTVVGPHPCPSMVREFQSVI GKETRRQAMEKWGGKPDVLVACIGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGR HSATLARGDVGVYHGAMSYLLQDAEGQILGPHSIGVGLEYPGVGPEVSFLKETGRAEF HSATDQEAIDAYRRLCKLEGIFPALEASHALAFLEKLCPTLANGTKVVVNISGRGDKD SDIVFQYKPHSMT" CDS join(26089493..26089813,26089908..26090264, 26090394..26090843) /locus_tag="TCM_030179" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030977t3" /codon_start=1 /product="Pyridoxal-5\'-phosphate-dependent enzyme family protein isoform 2" /protein_id="EOY28629.1" /db_xref="Phytozome:GSVIVT01012644001" /db_xref="TAIR:AT5G28237.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWQ8" /translation="MACNIKALSLNHQILSGTTVERKMGTASAANVSVVPETVTKTLP ASTTLTIKAPQPERLLIKTVDRKEINHGKFGRFGGKYVPETLMSCLGKLEAEFNLVLH DSEFQEELTTALRDYVGRETPLYFAQRLTDHYKNSRGEGPEIYLKREDLSHGGAHKIN NAIAQAMIAKRMGRKTIVAATGAGQHGVATAAACAKLSLECTIFMGATDMEKQASNVL LMKLLGAKVESVEGAFKEASSQAIREWVGNLETSYYLTGTVVGPHPCPSMVREFQSVI GKETRRQAMEKWGGKPDVLVACIGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGR HSATLARGDVGVYHGAMSYLLQDAEGQILGPHSIGVGYVLD" gene complement(26091720..26098344) /locus_tag="TCM_030180" /note="dbxref CacaoGD:Thecc1EG030180" mRNA complement(join(26091720..26092675,26093246..26093794, 26093882..26094844,26097081..26097338,26097428..26097529, 26097617..26098344)) /locus_tag="TCM_030180" /product="PCF11P-similar protein 4, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29842.m003631" /inference="similar to AA sequence:Phytozome:POPTR_0004s01970.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:PASA:2:TSA:puevd3b029191t1a2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc244t5" mRNA complement(join(26091720..26092675,26093246..26093794, 26093882..26094844,26095286..26096098,26097081..26097338, 26097428..26097529,26097617..26098344)) /locus_tag="TCM_030180" /product="PCF11P-similar protein 4, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003631" /inference="similar to AA sequence:ricco:29842.m003631" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc244t5" CDS complement(join(26092631..26092675,26093246..26093794, 26093882..26094844,26097081..26097338,26097428..26097529, 26097617..26097901)) /locus_tag="TCM_030180" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="PCF11P-similar protein 4, putative isoform 2" /protein_id="EOY28631.1" /db_xref="Phytozome:POPTR_0004s01970.1" /db_xref="TAIR:AT4G04885.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H7L4" /translation="MSNELAQKQQPSISERFKALLKQREDDLRVSGGDDGDDEVAATP SRGEIVQLYEAVLSELTFNSKPIITDLTIIAGEQREHGEGIADAICARILEVPVEQKL PSLYLLDSIVKNIGREYVRHFSSRLPEVFCEAYRQVNPNLYPAMRHLFGTWSTVFPPS VLRKIEIQLQFSQSANQQSPGVTSLRSSESPRPTHGIHVNPKYLRQLEQQSGADSSGR GSSQILHSHHPQEAWNSSYHFSQPSRNLHAKGRGRDFQIPFSASGIQSLGGEKIVPLI DKLPDGGSQFLRPPAVVPRTGSSSLDSVTVGARPAIIPSTTGVWPPVNVHKSQPPAMH SNYSLQQHSRSQFDSINPINMVMNEGPNKRSYMAEQFDRFESKEQSLTRVPQLPDQRA ALHQRNQMQVTSLQPHFLPSQDLRENFLSSATAPLPPRLLAPSLNHGYTPQMHGAVIS MVPSNPIHVAQPPLPIPNMPTVSLQLQGGALPPLPPGPPPASQMIPATQNAGPLLPNQ AQSGPYSGLISSLMAQGLISLTKPTPIQDPVGLEFNADLLKVRHESSISALYADLPRQ CTTCGLRFKFQEEHSTHMDWHVTRNRMSKNRKQKPSRKWFVSASMWLSGAEALGTDAV PGFLPTENVVEKKDDEELAVPADEDQSVCALCGEPFDDFYSDETEEWMYRGAVYMNAP NGSIEGMDRSQLGPIVHAKCRSESSVVPSEDFVRCDGGNSEDSSQRKRLRS" CDS complement(join(26092631..26092675,26093246..26093794, 26093882..26094844,26095286..26096098,26097081..26097338, 26097428..26097529,26097617..26097901)) /locus_tag="TCM_030180" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003631" /codon_start=1 /product="PCF11P-similar protein 4, putative isoform 1" /protein_id="EOY28630.1" /db_xref="TAIR:AT4G04885.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZK7" /translation="MSNELAQKQQPSISERFKALLKQREDDLRVSGGDDGDDEVAATP SRGEIVQLYEAVLSELTFNSKPIITDLTIIAGEQREHGEGIADAICARILEVPVEQKL PSLYLLDSIVKNIGREYVRHFSSRLPEVFCEAYRQVNPNLYPAMRHLFGTWSTVFPPS VLRKIEIQLQFSQSANQQSPGVTSLRSSESPRPTHGIHVNPKYLRQLEQQSGADSNTQ HVRGTSAALKVYGQKHSIGFDEFDSDHTEVPSSHVGVRRLRSTGNVGRTSVVVGANKS ASIVSRPFSPSRIGSDRLVLSEVDDLPSDGSPRRFVEGTSPSRPVFDYGRGRAIVRDE ETREWQRKHSYDDYHNRSESSLNAYKLSNGHERQTPRALIDAYGNDRGKGISNSKPAQ VERLAVNGMGNKVTPISWQNTEEEEFDWEDMSPTLADRSRSNDFSLSSVPPFGSIGER PAGLESNSRSSRATQTQLPLVDDSSTIPKNAVSSLSSGRGSSQILHSHHPQEAWNSSY HFSQPSRNLHAKGRGRDFQIPFSASGIQSLGGEKIVPLIDKLPDGGSQFLRPPAVVPR TGSSSLDSVTVGARPAIIPSTTGVWPPVNVHKSQPPAMHSNYSLQQHSRSQFDSINPI NMVMNEGPNKRSYMAEQFDRFESKEQSLTRVPQLPDQRAALHQRNQMQVTSLQPHFLP SQDLRENFLSSATAPLPPRLLAPSLNHGYTPQMHGAVISMVPSNPIHVAQPPLPIPNM PTVSLQLQGGALPPLPPGPPPASQMIPATQNAGPLLPNQAQSGPYSGLISSLMAQGLI SLTKPTPIQDPVGLEFNADLLKVRHESSISALYADLPRQCTTCGLRFKFQEEHSTHMD WHVTRNRMSKNRKQKPSRKWFVSASMWLSGAEALGTDAVPGFLPTENVVEKKDDEELA VPADEDQSVCALCGEPFDDFYSDETEEWMYRGAVYMNAPNGSIEGMDRSQLGPIVHAK CRSESSVVPSEDFVRCDGGNSEDSSQRKRLRS" mobile_element 26098630..26098734 /note="source:scaffold_8_CACTA_0855 1771 1879" /mobile_element_type="transposon:TIR/CACTA" gene 26099823..26103584 /locus_tag="TCM_030181" /note="dbxref CacaoGD:Thecc1EG030181" mRNA join(26099823..26100165,26100540..26100598, 26101100..26101435,26103486..26103584) /locus_tag="TCM_030181" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(26099931..26100165,26100540..26100598, 26101100..26101174) /locus_tag="TCM_030181" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28632.1" /translation="MCFRFHGIMISNLAFVFQNIFSKKGMKGKSVSGMHYYACLSISS LLIFRPFVITIAEGLLHLIARYSLNFLALKCAAIRKVITTGMLLSSRQILKGYEKLVL SFRRLAGIRQSHKLDLIFFN" mobile_element complement(26100300..26100407) /note="source:INTACT918F_F377_scaffold_6-int 6870 6978" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 26101855..26101996 /note="source:scaffold_4_CACTA_0502 4 160" /mobile_element_type="transposon:TIR/CACTA" gene 26104052..26106128 /locus_tag="TCM_030182" /note="dbxref CacaoGD:Thecc1EG030182" mRNA join(26104052..26104722,26104917..26105142, 26105223..26105445,26105557..26105770,26105879..26106128) /locus_tag="TCM_030182" /product="Glucose-6-phosphate/phosphate translocator 2" /inference="alignment:exonerate- protein:2:ricco:29842.m003630" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030183t1" /inference="similar to AA sequence:ricco:29842.m003630" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8397t1" CDS join(26104213..26104722,26104917..26105142, 26105223..26105445,26105557..26105770,26105879..26105890) /locus_tag="TCM_030182" /note="dbxref ricco:29842.m003630; paralog of Thecc1EG030183t1" /codon_start=1 /product="Glucose-6-phosphate/phosphate translocator 2" /protein_id="EOY28633.1" /db_xref="TAIR:AT1G61800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M5A9" /translation="MISSIKHSTSVFNSTGFFSNKRSSQFSPLTVIKNVHGGFPNQSC SYQKPLHIVAIENLAISKKTQQRKTECQAYEADRSTPLDINIELPDEEARLESAKRIK IGIYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLMMLISWATRVADAPKT DFEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEAFP LPVYLSLLPIIGGCALSAATELNFNMTGFMGAMISNLAFVFRNIFSKKGMKGKSVSGM NYYACLSMLSLLILTPFAIAVEGPQLWAVGWQKAVSQIGPNFVWWVVAQSVFYHLYNQ VSYMSLDQISPLTFSIGNTMKRISVIVSSIIIFHTPVQPVNALGAAIAILGTFLYSQA KQ" gene 26106238..26111508 /locus_tag="TCM_030183" /note="dbxref CacaoGD:Thecc1EG030183" mRNA join(26106238..26106338,26109257..26109809, 26110028..26110253,26110335..26110557,26110700..26110913, 26111173..26111508) /locus_tag="TCM_030183" /product="Glucose-6-phosphate/phosphate translocator 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003630.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030182t1" /inference="similar to AA sequence:Phytozome:Glyma13g27680.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1224t4" mRNA join(26109112..26109809,26110028..26110253, 26110335..26110557,26110700..26111440) /locus_tag="TCM_030183" /product="Glucose-6-phosphate/phosphate translocator 2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29842.m003630.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030182t1" /inference="similar to AA sequence:Phytozome:Glyma13g27680.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1224t5; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1224t4" CDS join(26109321..26109809,26110028..26110253, 26110335..26110557,26110700..26110913,26111173..26111184) /locus_tag="TCM_030183" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030182t1" /codon_start=1 /product="Glucose-6-phosphate/phosphate translocator 2 isoform 1" /protein_id="EOY28634.1" /db_xref="Phytozome:Glyma13g27680.1" /db_xref="TAIR:AT1G61800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M5A9" /translation="MISSIKHSTSAFNSTSFFSKKRSITRPQFSPLPVIKNVHNGFPN QSCSYQKPLHVAAIENLAILKKTQQRKIECQAYEADRSRPLDINIELPEIKIGIYFAT WWALNVVFNIYNKKVLNVFPYPWLTSTLSLAAGSLMMLISWVTRVADAPKTDFEFWKT LFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEAFPLPVYLSL LPIIGGCALSAATELNFNMTGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLS MLSLLILTPFAIAVEGPQLWAVGWQKAVSQIGPNFVWWVVAQSVFYHLYNQVSYMSLD QISPLTFSIGNTMKRISVIVSSIIIFHTPVQPVNALGAAVAILGTFLYSQAKQ" CDS join(26109321..26109809,26110028..26110253, 26110335..26110557,26110700..26111015) /locus_tag="TCM_030183" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030182t1" /codon_start=1 /product="Glucose-6-phosphate/phosphate translocator 2 isoform 2" /protein_id="EOY28635.1" /db_xref="Phytozome:Glyma13g27680.1" /db_xref="TAIR:AT1G61800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M5A9" /translation="MISSIKHSTSAFNSTSFFSKKRSITRPQFSPLPVIKNVHNGFPN QSCSYQKPLHVAAIENLAILKKTQQRKIECQAYEADRSRPLDINIELPEIKIGIYFAT WWALNVVFNIYNKKVLNVFPYPWLTSTLSLAAGSLMMLISWVTRVADAPKTDFEFWKT LFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEAFPLPVYLSL LPIIGGCALSAATELNFNMTGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLS MLSLLILTPFAIAVEGPQLWAVGWQKAVSQIGPNFVWWVVAQSVFYHLYNQVSYMSLD QISPLTFSIGNTMKRISVIVSSIIIFHTPVQPVNALGAAVAILGTFLYSQVYSLLSLR NLGGTNSSEWPFDILLGQHYCFLNR" gene 26111992..26113316 /locus_tag="TCM_030184" /note="dbxref CacaoGD:Thecc1EG030184" mRNA join(26111992..26112928,26113017..26113316) /locus_tag="TCM_030184" /product="LOB domain-containing protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014053" /inference="similar to AA sequence:ricco:30147.m014053" /note="quality class is strong, express is weak, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.20 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8395t1" CDS join(26112165..26112928,26113017..26113119) /locus_tag="TCM_030184" /note="dbxref ricco:30147.m014053" /codon_start=1 /product="LOB domain-containing protein, putative" /protein_id="EOY28636.1" /db_xref="TAIR:AT3G47870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R927" /translation="MTLKGGTASACAACKYQRRKCTPECPLAPYFPAEQARVFQNAHK LFGVSNILKILKNLNPAQQAEAMRSIKYQSNVRDQFPVYGCLGVIRQLQYQIQLVEEE LHAVHAQLEMYRQHHQISSIADDVPSQLELGMAPPSNALPLFNQVPQQHYNSLAALPV SMQHSYSNSSNVDYSSSYMDSKENVANSLWVQHPFAKNNNTDNGSTMAIQSQLVAPQT VAVQQQVVQDYDEIHPFFDAIDDRQSYIDSKEPYESSSEESLKDTTQSVEHVAENELK SAAACFSLTSVN" gene 26114742..26118404 /locus_tag="TCM_046849" /note="dbxref CacaoGD:Thecc1EG046849" mRNA join(26114742..26114754,26114855..26114921, 26115018..26115076,26115862..26115937,26116031..26116105, 26116199..26116286,26116372..26116624,26116731..26116846, 26116962..26117217,26117306..26117408,26117500..26117608, 26117692..26118120) /locus_tag="TCM_046849" /product="Beta-glucosidase 47 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046852t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s01920.1" /note="transcript variant 2; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01802t00002; inference alignment:Newbler:10:TSA:cgbaB_g01802t00002" mRNA join(26115731..26115937,26116031..26116105, 26116199..26116286,26116372..26116624,26116731..26116846, 26116962..26117217,26117306..26117408,26117500..26117608, 26117692..26118404) /locus_tag="TCM_046849" /product="Beta-glucosidase 47 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046852t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s01920.1" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8452t2; inference alignment:Newbler:10:TSA:cgbaB_g01802t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc949t7" CDS join(26115847..26115937,26116031..26116105, 26116199..26116286,26116372..26116624,26116731..26116846, 26116962..26117217,26117306..26117408,26117500..26117608, 26117692..26117884) /locus_tag="TCM_046849" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046852t1" /codon_start=1 /product="Beta-glucosidase 47 isoform 1" /protein_id="EOY28637.1" /db_xref="Phytozome:POPTR_0004s01920.1" /db_xref="TAIR:AT4G21760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVS1" /translation="MMMKQEDLNLMNYIGVNSYRFSISWARILPKGRFGSVNKAGINH YNKLINSLLVRGIKPFVTLTHYDIPQELENRYGAWLSPQVQEDFKYYADICFKHFGDR VKYWVTFNEPNVAVIRGYRSGLYPPSRCSSSFGNCSSGDSENEPFVAAHNIILSHAAA VDIYRTKYQKQQRGSIGIVMNAIWYEPISNSFEDKQAAERAQSFYMNWFLDPIILGKY PLEMQEILGSDLPVFSNHDQKKLKSGLDFIGVNHYTSFYIRDCMFSVCEQGPGSSKTE GFALRTALKDGIFIGKSTAVDWLYVYPQGMDKIVTYIKERYNSIPMFITENGFGENDK ADSPTEESLNDVNRVEYISGYLDTLAAALRKGADVRGYFLWSLLDNFEWTSGYTIRFG LHHVDYATLERTPRASAIWYKQFIANHTSPQEFSA" CDS join(26115877..26115937,26116031..26116105, 26116199..26116286,26116372..26116624,26116731..26116846, 26116962..26117217,26117306..26117408,26117500..26117608, 26117692..26117884) /locus_tag="TCM_046849" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046852t1" /codon_start=1 /product="Beta-glucosidase 47 isoform 2" /protein_id="EOY28638.1" /db_xref="Phytozome:POPTR_0004s01920.1" /db_xref="TAIR:AT4G21760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVS1" /translation="MNYIGVNSYRFSISWARILPKGRFGSVNKAGINHYNKLINSLLV RGIKPFVTLTHYDIPQELENRYGAWLSPQVQEDFKYYADICFKHFGDRVKYWVTFNEP NVAVIRGYRSGLYPPSRCSSSFGNCSSGDSENEPFVAAHNIILSHAAAVDIYRTKYQK QQRGSIGIVMNAIWYEPISNSFEDKQAAERAQSFYMNWFLDPIILGKYPLEMQEILGS DLPVFSNHDQKKLKSGLDFIGVNHYTSFYIRDCMFSVCEQGPGSSKTEGFALRTALKD GIFIGKSTAVDWLYVYPQGMDKIVTYIKERYNSIPMFITENGFGENDKADSPTEESLN DVNRVEYISGYLDTLAAALRKGADVRGYFLWSLLDNFEWTSGYTIRFGLHHVDYATLE RTPRASAIWYKQFIANHTSPQEFSA" gene 26118753..>26122975 /locus_tag="TCM_046852" /note="dbxref CacaoGD:Thecc1EG046852" mRNA join(26118753..26119010,26119161..26119227, 26119385..26119446,26119966..26120041,26120173..26120247, 26120333..26120420,26120550..26120802,26120901..26121016, 26121116..26121371,26121452..26121554,26121628..26121736, 26122007..26122079,26122795..>26122975) /locus_tag="TCM_046852" /product="Beta glucosidase 46 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046853t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012650001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8452t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8452t5" mRNA join(26118753..26119010,26119966..26120041, 26120173..26120247,26120333..26120420,26120550..26120802, 26120901..26121016,26121116..26121371,26121452..26121554, 26121628..26121736,26122007..26122079,26122795..>26122975) /locus_tag="TCM_046852" /product="Beta glucosidase 46 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046853t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012650001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8452t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8452t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc253t19" mobile_element 26118847..26119034 /note="source:scaffold_2_CACTA_0276 17689 17877" /mobile_element_type="transposon:TIR/CACTA" mRNA join(26118848..26119010,26119161..26119227, 26119385..26119446,26119966..26120041,26120173..26120247, 26120333..26120420,26120550..26120802,26120901..26121016, 26121116..26121371,26121452..26121554,26121628..26121736, 26122007..26122523) /locus_tag="TCM_046852" /product="Beta glucosidase 46 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046853t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012650001" /note="transcript variant 1; alternatively spliced; quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc253t19; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc253t19" CDS join(26118849..26119010,26119161..26119227, 26119385..26119446,26119966..26120041,26120173..26120247, 26120333..26120420,26120550..26120802,26120901..26121016, 26121116..26121371,26121452..26121554,26121628..26121736, 26122007..26122079,26122795..>26122974) /locus_tag="TCM_046852" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG046853t1" /codon_start=1 /product="Beta glucosidase 46 isoform 3" /protein_id="EOY28641.1" /db_xref="Phytozome:GSVIVT01012650001" /db_xref="TAIR:AT1G61820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80689" /translation="MDVSRMLCIGFFLLQMFLLPLSISSELLTLEQSLGNLSAFPPNF LFGTASSAYQYEGGFMSDGKGLNNWDVYSHKPGNMIADGSNGDIAVDHYHRYLEDIDL MHSLGVNSYRFSISWARILPKGRFGKINEAGINFYNKLIDALLLKGIKPLVTLTHVDF PQELEDRYGSWLSPEWQEDFAYFADICFKSFGDRVQYWVTFNEPDFQVKFAYRTGIFP PSRCSWPFGNCTYGDSEKEPFIAAHNIILAHIAAVHIYRTKYQETQGGSIGIVLHCFW FESISNSLADKLAAERAQSFTMKWFLDPIIFGRYPPEMQNILGSILPEFSTTEKEKLN KGLDFIGVNHYSSYYVKDCMFSVCEPGTGTSKTEGFWGQSSQKNGIPIGELTDLDWLN VYPQGMEKIVTYLKETYHNIPMIITENGYGEVSKANSTTEEFLHDVKRVEYLAGYLDQ LSTAIRKGADVRGYFVWSLLDNFEWNFGYTVKPFSWHVYLFDFTPSDCKWLFQQKGMR NYAIGGPDYQSRKKTKLFCLLFLKIYINICNS" CDS join(26118849..26119010,26119966..26120041, 26120173..26120247,26120333..26120420,26120550..26120802, 26120901..26121016,26121116..26121371,26121452..26121554, 26121628..26121736,26122007..26122079,26122795..>26122974) /locus_tag="TCM_046852" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046853t1" /codon_start=1 /product="Beta glucosidase 46 isoform 2" /protein_id="EOY28640.1" /db_xref="Phytozome:GSVIVT01012650001" /db_xref="TAIR:AT1G61820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80689" /translation="MDVSRMLCIGFFLLQMFLLPLSISSELLTLEQSLGNLSAFPPNF LFGTASSAYQEDIDLMHSLGVNSYRFSISWARILPKGRFGKINEAGINFYNKLIDALL LKGIKPLVTLTHVDFPQELEDRYGSWLSPEWQEDFAYFADICFKSFGDRVQYWVTFNE PDFQVKFAYRTGIFPPSRCSWPFGNCTYGDSEKEPFIAAHNIILAHIAAVHIYRTKYQ ETQGGSIGIVLHCFWFESISNSLADKLAAERAQSFTMKWFLDPIIFGRYPPEMQNILG SILPEFSTTEKEKLNKGLDFIGVNHYSSYYVKDCMFSVCEPGTGTSKTEGFWGQSSQK NGIPIGELTDLDWLNVYPQGMEKIVTYLKETYHNIPMIITENGYGEVSKANSTTEEFL HDVKRVEYLAGYLDQLSTAIRKGADVRGYFVWSLLDNFEWNFGYTVKPFSWHVYLFDF TPSDCKWLFQQKGMRNYAIGGPDYQSRKKTKLFCLLFLKIYINICNS" CDS join(26118849..26119010,26119161..26119227, 26119385..26119446,26119966..26120041,26120173..26120247, 26120333..26120420,26120550..26120802,26120901..26121016, 26121116..26121371,26121452..26121554,26121628..26121736, 26122007..26122229) /locus_tag="TCM_046852" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046853t1" /codon_start=1 /product="Beta glucosidase 46 isoform 1" /protein_id="EOY28639.1" /db_xref="Phytozome:GSVIVT01012650001" /db_xref="TAIR:AT1G61820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80689" /translation="MDVSRMLCIGFFLLQMFLLPLSISSELLTLEQSLGNLSAFPPNF LFGTASSAYQYEGGFMSDGKGLNNWDVYSHKPGNMIADGSNGDIAVDHYHRYLEDIDL MHSLGVNSYRFSISWARILPKGRFGKINEAGINFYNKLIDALLLKGIKPLVTLTHVDF PQELEDRYGSWLSPEWQEDFAYFADICFKSFGDRVQYWVTFNEPDFQVKFAYRTGIFP PSRCSWPFGNCTYGDSEKEPFIAAHNIILAHIAAVHIYRTKYQETQGGSIGIVLHCFW FESISNSLADKLAAERAQSFTMKWFLDPIIFGRYPPEMQNILGSILPEFSTTEKEKLN KGLDFIGVNHYSSYYVKDCMFSVCEPGTGTSKTEGFWGQSSQKNGIPIGELTDLDWLN VYPQGMEKIVTYLKETYHNIPMIITENGYGEVSKANSTTEEFLHDVKRVEYLAGYLDQ LSTAIRKGADVRGYFVWSLLDNFEWNFGYTVRFGLHHVDFKTLKRTPKSSATWYKNFI SEHGQVKDQKPGHVQNHPYYY" mobile_element 26123203..26124123 /note="source:scaffold_2_CACTA_0276 16991 17957" /mobile_element_type="transposon:TIR/CACTA" gene 26123432..26126866 /locus_tag="TCM_046853" /note="dbxref CacaoGD:Thecc1EG046853" mRNA join(26123432..26124039,26124136..26124202, 26124396..26124454,26124567..26124642,26124724..26124798, 26124881..26124968,26125048..26125300,26125371..26125486, 26125573..26125828,26125911..26126013,26126094..26126866) /locus_tag="TCM_046853" /product="Beta glucosidase 46, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046852t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012650001" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8417t1" CDS join(26123875..26124039,26124136..26124202, 26124396..26124454,26124567..26124642,26124724..26124798, 26124881..26124968,26125048..26125300,26125371..26125486, 26125573..26125828,26125911..26126013,26126094..26126425) /locus_tag="TCM_046853" /note="paralog of Thecc1EG046852t1" /codon_start=1 /product="Beta glucosidase 46, putative" /protein_id="EOY28642.1" /db_xref="Phytozome:GSVIVT01012650001" /db_xref="TAIR:AT1G61820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80689" /translation="MDISMLYIGSFLLQILFMLPLSISSELQTLKQTLGNPSSSFPPN FLFGTASSAYQYEGGYLSDGKGLNNWDVYTHKPENVIDGSNGDVAVDHYNRYMEDIDL MVSLGVNSYRFSISWARILPKGKFGEVNPAGINFYNKLIDALLLKGIEPFVTLTHVDL PQEIEDRYGSWLSPESQEDFAYFAEVCFRSFGDRVKYWVTFNEPNYQVKFGYRTGTFP PSRCSWPFGNCTIGDSDKEPFIAAHNIILSHAAAVHIYRTKYQAKQGGSIGIVLNCAW FEPISNSLADKLAAERAQSFSINWFLDPIIFGRYPIEMQNILGSILPEFSITEKEKLQ KGLDFIGINHYSSSYVQDCMFSACEPGTGTSKTEGFWRQTSQKNGIPIGESTDLDWLY VYPGGMEKIVTYLKKRYHNIPMIITENGYGEEGKANATIEDFLQDVKRAEYMAGYLDA LSTAIRKGADVRGYFAWSLLDNFEWQYGYTRRFGLHHVDYKTLKRTPKFSASWYKEFI AVQGKVKYQTTERVQKHPYYY" gene complement(26126720..26130804) /locus_tag="TCM_030187" /note="dbxref CacaoGD:Thecc1EG030187" mRNA complement(join(26126720..26127262,26127793..26127962, 26128428..26128539,26128777..26128831,26128940..26129055, 26129255..26129336,26129411..26129665,26129781..26129951, 26130459..26130804)) /locus_tag="TCM_030187" /product="Pseudouridine synthase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01870.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s01870.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08174t00001" CDS complement(join(26126981..26127262,26127793..26127962, 26128428..26128539,26128777..26128831,26128940..26129055, 26129255..26129336,26129411..26129665,26129781..26129951, 26130459..26130691)) /locus_tag="TCM_030187" /codon_start=1 /product="Pseudouridine synthase family protein" /protein_id="EOY28643.1" /db_xref="Phytozome:POPTR_0004s01870.1" /db_xref="TAIR:AT4G21770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVS0" /translation="MGSASLASIFGIGYRSLGAPMSLLRTLASTGASLYKLNKNYSKT VLSWSCLGSSRRELSCLSTKMDAAQTASATSVNGVLLYFMIEIHFLFSYPEYHRLLPC PSHNGPPRVEHLVVSEGGPVLEYICKALDLPPMFVADLIHFGAVYYALVCPQPPPSAT PEQIRIFKEVTAPSVLSKRTSIRGKTVREAQKTFRITHVDQFVEAGTYLRVHVHPKRF PRCYEIDWKSRIIAVTDSYVVLDKPAGTSVGGTTDNIEESCATFANRALGFSTPLKTT HQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALTAAPLPIGVITHYMRPINM APRLVSEDFIKGWYLCQLEVMECKKVPWPDYVIQENYCIEDSGWPLKDHAYECKINLL TGRTHQVRAQLAACGAPILGDSMYMPPTIAEIANPGLNPFGKYKKHTSENDKEIAITE WISQFGKEPSVAIGLQACQISWDDGEHFYKARSPWWRSRKA" mobile_element 26131995..26132054 /note="source:scaffold_1_CACTA_0006 8449 8509" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26132055..26132077) /note="source:INTACT146F_F14_scaffold_2-int 13415 13501" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26132256..26132362) /note="source:INTACT433_F212_scaffold_1-int 3045 3143" /mobile_element_type="retrotransposon:LTR/Copia" gene 26133236..26135052 /locus_tag="TCM_030188" /note="dbxref CacaoGD:Thecc1EG030188" mRNA 26133236..26135052 /locus_tag="TCM_030188" /product="Cytochrome P450, family 77, subfamily B, polypeptide 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044134t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s01840.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02486t00001" CDS 26133292..26134809 /locus_tag="TCM_030188" /note="paralog of Thecc1EG044134t1" /codon_start=1 /product="Cytochrome P450, family 77, subfamily B, polypeptide 1" /protein_id="EOY28644.1" /db_xref="Phytozome:POPTR_0004s01840.1" /db_xref="TAIR:AT1G11600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SAB7" /translation="MELVDLFVIGLALIFLRLWWRYWSVTGGGPKNLPPGPPGWPLVG NLIQVILQRRHFIFIVRELRKIYGPIFTLRMGQRTMVIVTDSRLIHEALVQRGPTFAS RPPDSPIRLVFSMGKCAINSAEYGPLWRTLRKNFVTELITPTRVKQCSWIRKWALENH MKRIKSEAFENGFVEVMSNCRLTICSILICLCFGAKISEERIKKIESILKDVMLITSP QLPDFLPILTPLFRRQMKEAKALRKRQLECLVPLIKNRRAFVEKGENPNQEMVSPIGA AYIDSLFGLEPATRGPLGEEEYVTLCSEVISAGTDTSATTVEWAMLHLVTKQEIQDKL YQEIVAVVGKNGDIQEEDVEKMPYLDAVVKETLRRHPPGHFLLSHAAIKDTELGGYTI PEGVFVEFYTAWITENPDIWSDPGEFQPERFLHGDGVGVDVTGTRAVKMVPFGAGRRI CPAWSLGILHINMLLAKMVQAFKWLPVPDAPPDLTETYAFTVVMKNPLRAVILPR" gene complement(26135227..26136403) /locus_tag="TCM_030189" /note="dbxref CacaoGD:Thecc1EG030189" mRNA complement(join(26135227..26136188,26136279..26136403)) /locus_tag="TCM_030189" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.43 coverage" CDS complement(join(26136013..26136188,26136279..26136345)) /locus_tag="TCM_030189" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28645.1" /translation="MAVMPCFTGWFVCLFMEQWNRPVVPFSFGFCVNIYWLHLLVMNL HGALLLPHSKIYEVFVYHFISCCAEVFALAKISRDN" gene 26138694..26141821 /locus_tag="TCM_030190" /note="dbxref CacaoGD:Thecc1EG030190" mRNA join(26138694..26138887,26138993..26139063, 26139378..26139469,26139557..26139616,26139724..26139927, 26140014..26140090,26140258..26140327,26140430..26140543, 26140882..26140948,26141094..26141198,26141288..26141618) /locus_tag="TCM_030190" /product="Adenosine/AMP deaminase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0021s01090.1" /inference="similar to AA sequence:Phytozome:POPTR_0021s01090.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08111t00001; inference alignment:Newbler:10:TSA:cgbaB_g08111t00001" CDS join(26138796..26138887,26138993..26139063, 26139378..26139469,26139557..26139616,26139724..26139927, 26140014..26140090,26140258..26140327,26140430..26140543, 26140882..26140948,26141094..26141198,26141288..26141412) /locus_tag="TCM_030190" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Adenosine/AMP deaminase family protein isoform 1" /protein_id="EOY28646.1" /db_xref="Phytozome:POPTR_0021s01090.1" /db_xref="TAIR:AT4G04880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LPL7" /translation="MNRQDMEWCVSMPKVELHAHLNGSVRDSTLLELARVLGKKGIIA FSDVENVIMKSDRTLHEVFKLFDLIHILTTDHSTVTRITKEVIEDFASENVVYLELRT TPKRNDSIGMSKRSYMEAVMEGLKAVSSVDVDYAPAGLKTNTFNGTTRKKLYVRFLLS IDRRESTEAAMETVKLALEMRDSGVVGIDLSGNPIVGNWTTFLPALKYAREQGLCVTL HCGEVPNQEEIKAMLDFLPQRIGHACCFEEENWRKLKSLKIPVEICLTSNIRTETISS IDIHHFAELYKAKHPLVLCTDDSGVFSTSLSGEYHLASSAFGLGKTEMFQLAETAICF IFADDGVKEELRAIFEVAAGKLKL" mRNA join(<26138862..26138887,26139378..26139469, 26139557..26139616,26139724..26139927,26140014..26140090, 26140258..26140327,26140430..26140543,26140882..26140948, 26141094..26141198,26141288..26141821) /locus_tag="TCM_030190" /product="Adenosine/AMP deaminase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0021s01090.1" /inference="similar to AA sequence:Phytozome:GSVIVT01012654001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc878t1; inference alignment:Newbler:10:TSA:cgbaB_g08111t00001" CDS join(<26138863..26138887,26139378..26139469, 26139557..26139616,26139724..26139927,26140014..26140090, 26140258..26140327,26140430..26140543,26140882..26140948, 26141094..26141198,26141288..26141412) /locus_tag="TCM_030190" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Adenosine/AMP deaminase family protein isoform 2" /protein_id="EOY28647.1" /db_xref="Phytozome:GSVIVT01012654001" /db_xref="TAIR:AT4G04880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LPL7" /translation="VQLGTLLSCDRTLHEVFKLFDLIHILTTDHSTVTRITKEVIEDF ASENVVYLELRTTPKRNDSIGMSKRSYMEAVMEGLKAVSSVDVDYAPAGLKTNTFNGT TRKKLYVRFLLSIDRRESTEAAMETVKLALEMRDSGVVGIDLSGNPIVGNWTTFLPAL KYAREQGLCVTLHCGEVPNQEEIKAMLDFLPQRIGHACCFEEENWRKLKSLKIPVEIC LTSNIRTETISSIDIHHFAELYKAKHPLVLCTDDSGVFSTSLSGEYHLASSAFGLGKT EMFQLAETAICFIFADDGVKEELRAIFEVAAGKLKL" gene 26142268..26150603 /locus_tag="TCM_030191" /note="dbxref CacaoGD:Thecc1EG030191" mRNA join(26142268..26143058,26143389..26143536, 26143719..26143807,26143882..26144038,26144133..26144345, 26144445..26144690,26144763..26144925,26145000..26145260, 26145350..26145471,26145852..26146013,26146167..26146359, 26146452..26146588,26146897..26147035,26147226..26147432, 26147527..26148001,26148089..26148305,26148412..26148501, 26149197..26149868) /locus_tag="TCM_030191" /product="Phospholipases,galactolipases isoform 3" /inference="alignment:exonerate- protein:2:ricco:29842.m003623" /inference="similar to AA sequence:ricco:29842.m003623" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc281t5; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc289t6" mRNA join(26142268..26143058,26143389..26143536, 26143719..26143797,26143885..26144038,26144133..26144345, 26144445..26144690,26144763..26144925,26145000..26145260, 26145350..26145471,26145852..26146013,26146167..26146359, 26146452..26146588,26146897..26147035,26147226..26147432, 26147527..26148001,26148096..26148305,26148412..26148501, 26149197..26149689) /locus_tag="TCM_030191" /product="Phospholipases,galactolipases isoform 2" /inference="alignment:exonerate- protein:2:ricco:29842.m003623" /inference="similar to AA sequence:ricco:29842.m003623" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc289t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc289t6" mRNA join(26142269..26143058,26143389..26143536, 26143719..26143797,26143885..26144038,26144133..26144345, 26144445..26144690,26144763..26144925,26145000..26145260, 26145350..26145471,26145852..26146013,26146167..26146359, 26146452..26146588,26146897..26147035,26147226..26147432, 26147527..26148001,26148089..26148305,26148412..26148501, 26149197..26150603) /locus_tag="TCM_030191" /product="Phospholipases,galactolipases isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003623" /inference="similar to AA sequence:ricco:29842.m003623" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc289t6" CDS join(26142534..26143058,26143389..26143536, 26143719..26143797,26143885..26144038,26144133..26144345, 26144445..26144690,26144763..26144925,26145000..26145260, 26145350..26145471,26145852..26146013,26146167..26146359, 26146452..26146588,26146897..26147035,26147226..26147432, 26147527..26148001,26148089..26148305,26148412..26148501, 26149197..26149646) /locus_tag="TCM_030191" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003623" /codon_start=1 /product="Phospholipases,galactolipases isoform 1" /protein_id="EOY28648.1" /db_xref="TAIR:AT1G61850.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1E4" /translation="MSWGLGWKRPSEIFRLSLSYGNEESAEDLDRTSSASSTSSVSSS SASLPPQNQQEVGFRIDLDWIAGDDEDQVALRLQSQLMVALPVPQDAVAIELRQTEGN VVGVEMKVEKRREPLRAVTMVKAAGSGQQSDGVGVLVRLLRSNLVPSGDGSPVQCGDH WRSVTLLSLCGCGLMTLPVELTRLPILEKLYLDYNKLSVLPPELGELKTLKVLRVDYN MLVSVPVELRQCVGLVELSLEHNKLVRPLLDFRAMAELQILRLFGNPLEFLPEILPLR KLRHLSLANIRIVADENLRSVTVQIEMENSSYFGASRHKLSAFFSLIFRFSSCHHPLL ASALAKIIMQDQGNRVVIGKDENAVRQLISMISSDNRHVVEQACSALSTLAGDVSVAM QLMKCDIMQPIETVMRSPAPEELVSVLQVVVTLAFVSDTVAQKMLTKDVLRSLKMLCA HKNPEVQRLALLAVGNLAFCLENRRILVTSESLKELLMRLTIAPEPRVNRAAARALAI LGENENLRRAIRGRQIPKQGLRILSMDGGGMKGLATVKILKEIEKGTGKRIHELFDLI CGTSTGGMLAVALGIKLMTLDQCEEIYKNLGKLVFAEPVPKDNEAATWREKLDQLYKS SSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESAVKNIPKVFVVSTLVSVMPA QPFVFRNYQYPVGTPEVPFAISESSGITFLGSPTTGAQVGYKRSAFIGSCKHHIWQAI RASSAAPYYLDDFSDDVYRWQDGAIVANNPTIFAIREAQLLWPDTKIDCLVSIGCGSV PTKARKGGWRYLDTGQVLIESACSVDRVEEALSTLLPMLPEIQYFRFNPVDERCDMEL DETDPTVWLKLEAAVEDYIQNNSESFKNACERLLLPFAHDEKWTENLKSQHFARAKAS SADENSPSLGWRRNVLLVEALHSPDLGRVVHHARALESFCARNGIRLSLLHGLSGISK TLPATTFPTPFTSPLITGSFPSSPLLFSPDVGLQRLGRIDMVPPLSLDGLQSGKTATS PPKSPPAPRQLSLPVRSLHEKLQNLPQVGIIHLALQNDSVGSILSWQNDVFVVAEPGE LADKFLQSVKVSMLSVIRSQHRNDASSFANITTIADLIHYRPYFQVGNIIHKYIGRQT QVMEDDQEIGAYMFRRTVPSLHLTPDDVRWMVGAWRDRIIICTGTYGPTANLTKAFLD SGAKAVICPSAEPQEVSMTAVNGSGEYNVLENGRFEIGEEDAEEEEEAEPISPVSDWE DSDLEKNGNHSTGFRDEEEEELSRFVCQLYDPVFREGARVDVALKKALASHRKLRFSC HLPNVK" CDS join(26142534..26143058,26143389..26143536, 26143719..26143797,26143885..26144038,26144133..26144345, 26144445..26144690,26144763..26144925,26145000..26145260, 26145350..26145471,26145852..26146013,26146167..26146359, 26146452..26146588,26146897..26147035,26147226..26147432, 26147527..26148001,26148096..26148177) /locus_tag="TCM_030191" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003623" /codon_start=1 /product="Phospholipases,galactolipases isoform 2" /protein_id="EOY28649.1" /db_xref="TAIR:AT1G61850.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HX14" /translation="MSWGLGWKRPSEIFRLSLSYGNEESAEDLDRTSSASSTSSVSSS SASLPPQNQQEVGFRIDLDWIAGDDEDQVALRLQSQLMVALPVPQDAVAIELRQTEGN VVGVEMKVEKRREPLRAVTMVKAAGSGQQSDGVGVLVRLLRSNLVPSGDGSPVQCGDH WRSVTLLSLCGCGLMTLPVELTRLPILEKLYLDYNKLSVLPPELGELKTLKVLRVDYN MLVSVPVELRQCVGLVELSLEHNKLVRPLLDFRAMAELQILRLFGNPLEFLPEILPLR KLRHLSLANIRIVADENLRSVTVQIEMENSSYFGASRHKLSAFFSLIFRFSSCHHPLL ASALAKIIMQDQGNRVVIGKDENAVRQLISMISSDNRHVVEQACSALSTLAGDVSVAM QLMKCDIMQPIETVMRSPAPEELVSVLQVVVTLAFVSDTVAQKMLTKDVLRSLKMLCA HKNPEVQRLALLAVGNLAFCLENRRILVTSESLKELLMRLTIAPEPRVNRAAARALAI LGENENLRRAIRGRQIPKQGLRILSMDGGGMKGLATVKILKEIEKGTGKRIHELFDLI CGTSTGGMLAVALGIKLMTLDQCEEIYKNLGKLVFAEPVPKDNEAATWREKLDQLYKS SSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESAVKNIPKVFVVSTLVSVMPA QPFVFRNYQYPVGTPEVPFAISESSGITFLGSPTTGAQVGYKRSAFIGSCKHHIWQAI RASSAAPYYLDDFSDDVYRWQDGAIVANNPTIFAIREAQLLWPDTKIDCLVSIGCGSV PTKARKGGWRYLDTGQVLIESACSVDRVEEALSTLLPMLPEIQYFRFNPVDERCDMEL DETDPTVWLKLEAAVEDYIQNNSESFKNACERLLLPFAHDEKWTENLKSQHFARAKAS SADENSPSLGWRRNVLLVEALHSPDLGRVVHHARALESFCARNGIRLSLLHGLSGISK TLPATTFPTPFTSPLITGSFPSSPLLFSPDVGLQRLGRIDMVPPLSLDGLQSGKTATS PPKSPPAPRQLSLPVRSLHEKLQNLPQVGIIHLALQNDSVGSILRMTFLSWRNLENWL ISFYKVSRLACCQ" mRNA join(26143772..26143797,26143875..26144038, 26144133..26144345,26144445..26144690,26144763..26144925, 26145000..26145260,26145350..26145471,26145852..26146013, 26146167..26146359,26146452..26146588,26146897..26147035, 26147226..26147432,26147527..26148001,26148089..26148305, 26148412..26148501,26149197..26149868) /locus_tag="TCM_030191" /product="Phospholipases,galactolipases isoform 3" /inference="alignment:exonerate- protein:2:ricco:29842.m003623" /inference="similar to AA sequence:ricco:29842.m003623" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc281t6; alternateUTRof:Thecc1EG030191t3; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc289t6" CDS join(26143889..26144038,26144133..26144345, 26144445..26144690,26144763..26144925,26145000..26145260, 26145350..26145471,26145852..26146013,26146167..26146359, 26146452..26146588,26146897..26147035,26147226..26147432, 26147527..26148001,26148089..26148305,26148412..26148501, 26149197..26149646) /locus_tag="TCM_030191" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29842.m003623" /codon_start=1 /product="Phospholipases,galactolipases isoform 3" /protein_id="EOY28650.1" /db_xref="TAIR:AT1G61850.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1E4" /translation="MAELQILRLFGNPLEFLPEILPLRKLRHLSLANIRIVADENLRS VTVQIEMENSSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIIMQDQGNRVVIGK DENAVRQLISMISSDNRHVVEQACSALSTLAGDVSVAMQLMKCDIMQPIETVMRSPAP EELVSVLQVVVTLAFVSDTVAQKMLTKDVLRSLKMLCAHKNPEVQRLALLAVGNLAFC LENRRILVTSESLKELLMRLTIAPEPRVNRAAARALAILGENENLRRAIRGRQIPKQG LRILSMDGGGMKGLATVKILKEIEKGTGKRIHELFDLICGTSTGGMLAVALGIKLMTL DQCEEIYKNLGKLVFAEPVPKDNEAATWREKLDQLYKSSSQSFRVVVHGSKHSADQFE RLLKEMCADEDGDLLIESAVKNIPKVFVVSTLVSVMPAQPFVFRNYQYPVGTPEVPFA ISESSGITFLGSPTTGAQVGYKRSAFIGSCKHHIWQAIRASSAAPYYLDDFSDDVYRW QDGAIVANNPTIFAIREAQLLWPDTKIDCLVSIGCGSVPTKARKGGWRYLDTGQVLIE SACSVDRVEEALSTLLPMLPEIQYFRFNPVDERCDMELDETDPTVWLKLEAAVEDYIQ NNSESFKNACERLLLPFAHDEKWTENLKSQHFARAKASSADENSPSLGWRRNVLLVEA LHSPDLGRVVHHARALESFCARNGIRLSLLHGLSGISKTLPATTFPTPFTSPLITGSF PSSPLLFSPDVGLQRLGRIDMVPPLSLDGLQSGKTATSPPKSPPAPRQLSLPVRSLHE KLQNLPQVGIIHLALQNDSVGSILSWQNDVFVVAEPGELADKFLQSVKVSMLSVIRSQ HRNDASSFANITTIADLIHYRPYFQVGNIIHKYIGRQTQVMEDDQEIGAYMFRRTVPS LHLTPDDVRWMVGAWRDRIIICTGTYGPTANLTKAFLDSGAKAVICPSAEPQEVSMTA VNGSGEYNVLENGRFEIGEEDAEEEEEAEPISPVSDWEDSDLEKNGNHSTGFRDEEEE ELSRFVCQLYDPVFREGARVDVALKKALASHRKLRFSCHLPNVK" CDS join(26143889..26144038,26144133..26144345, 26144445..26144690,26144763..26144925,26145000..26145260, 26145350..26145471,26145852..26146013,26146167..26146359, 26146452..26146588,26146897..26147035,26147226..26147432, 26147527..26148001,26148089..26148305,26148412..26148501, 26149197..26149646) /locus_tag="TCM_030191" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29842.m003623" /codon_start=1 /product="Phospholipases,galactolipases isoform 3" /protein_id="EOY28651.1" /db_xref="TAIR:AT1G61850.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1E4" /translation="MAELQILRLFGNPLEFLPEILPLRKLRHLSLANIRIVADENLRS VTVQIEMENSSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIIMQDQGNRVVIGK DENAVRQLISMISSDNRHVVEQACSALSTLAGDVSVAMQLMKCDIMQPIETVMRSPAP EELVSVLQVVVTLAFVSDTVAQKMLTKDVLRSLKMLCAHKNPEVQRLALLAVGNLAFC LENRRILVTSESLKELLMRLTIAPEPRVNRAAARALAILGENENLRRAIRGRQIPKQG LRILSMDGGGMKGLATVKILKEIEKGTGKRIHELFDLICGTSTGGMLAVALGIKLMTL DQCEEIYKNLGKLVFAEPVPKDNEAATWREKLDQLYKSSSQSFRVVVHGSKHSADQFE RLLKEMCADEDGDLLIESAVKNIPKVFVVSTLVSVMPAQPFVFRNYQYPVGTPEVPFA ISESSGITFLGSPTTGAQVGYKRSAFIGSCKHHIWQAIRASSAAPYYLDDFSDDVYRW QDGAIVANNPTIFAIREAQLLWPDTKIDCLVSIGCGSVPTKARKGGWRYLDTGQVLIE SACSVDRVEEALSTLLPMLPEIQYFRFNPVDERCDMELDETDPTVWLKLEAAVEDYIQ NNSESFKNACERLLLPFAHDEKWTENLKSQHFARAKASSADENSPSLGWRRNVLLVEA LHSPDLGRVVHHARALESFCARNGIRLSLLHGLSGISKTLPATTFPTPFTSPLITGSF PSSPLLFSPDVGLQRLGRIDMVPPLSLDGLQSGKTATSPPKSPPAPRQLSLPVRSLHE KLQNLPQVGIIHLALQNDSVGSILSWQNDVFVVAEPGELADKFLQSVKVSMLSVIRSQ HRNDASSFANITTIADLIHYRPYFQVGNIIHKYIGRQTQVMEDDQEIGAYMFRRTVPS LHLTPDDVRWMVGAWRDRIIICTGTYGPTANLTKAFLDSGAKAVICPSAEPQEVSMTA VNGSGEYNVLENGRFEIGEEDAEEEEEAEPISPVSDWEDSDLEKNGNHSTGFRDEEEE ELSRFVCQLYDPVFREGARVDVALKKALASHRKLRFSCHLPNVK" gene 26151312..26152210 /locus_tag="TCM_030192" /note="dbxref CacaoGD:Thecc1EG030192" mRNA 26151312..26152210 /locus_tag="TCM_030192" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01820.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s01820.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8425t1" CDS 26151351..26151746 /locus_tag="TCM_030192" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28652.1" /db_xref="Phytozome:POPTR_0004s01820.1" /translation="MQYKASFTNTKFFPEKMAAATPVAIGTRGTVGSLLKKEIEYFTK FELEGRGSCWKPHGQVVEMVQMDCRSGHGRQSLWLSITGWKRKKRRGGSGFLPSMCSA TEVADKNQLNRIPGFNYRILKSDVNNFHF" gene complement(26152635..26155063) /locus_tag="TCM_030193" /note="dbxref CacaoGD:Thecc1EG030193" mRNA complement(join(26152635..26153169,26153391..26153782, 26153933..26154122,26154214..26154392,26154583..26155063)) /locus_tag="TCM_030193" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:TAIR:AT3G20530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030963t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012657001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8427t1" CDS complement(join(26152891..26153169,26153391..26153782, 26153933..26154122,26154214..26154392,26154583..26154721)) /locus_tag="TCM_030193" /note="paralog of Thecc1EG030963t1" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY28653.1" /db_xref="Phytozome:GSVIVT01012657001" /db_xref="TAIR:AT3G20530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S9I9" /translation="MSCFFCCGVEVQQRIGSFKESSHGVEGNNKSGKSFKSFMNNLTG KTSSSKQKIAEEIQKIGKAKVSARIFTLRELVVATDNFNPDCLIGEGGFGRVYKGYIE SIDKIVAVKQLDRNGMQGSREFFSEVLMLSLVHHPNLVNLIGYCADGDQKILVYEYLP NGSLEKHLLDLPPGKEPLDWNTRMKIAEGAAKGLEYLHDFAEPPIIYRDFKASNILLD ADFNPKLSDFGLAKLGPTGGRDHVSTRVMGTYGYCAPEYAMTGQLTTKSDVYSFGVVF LELISGRRAIDIERPSEEQNLVAWAEPLFKDRQKFTLMADPLLAGNYTVKGLYQALAV AAMCLQEEADTRPLIGDVVTALEFLARPKDTNKIAAESETNSSLHASSMKERKFQKGP " gene 26155249..26157846 /locus_tag="TCM_030194" /note="dbxref CacaoGD:Thecc1EG030194" mRNA join(26155249..26155908,26155998..26156064, 26156170..26156244,26156333..26156384,26156729..26156814, 26156932..26157006,26157233..26157327,26157420..26157832) /locus_tag="TCM_030194" /product="Cardiolipin synthase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01790.1" /inference="similar to AA sequence:TAIR:AT4G04870.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16959t1" mRNA join(<26155252..26155908,26155998..26156064, 26156170..26156244,26156333..26156384,26156712..26156814, 26156932..26157006,26157233..26157327,26157420..26157846) /locus_tag="TCM_030194" /product="Cardiolipin synthetase 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01790.1" /inference="similar to AA sequence:TAIR:AT4G04870.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc392t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16959t1" mRNA join(<26155252..26155908,26155998..26156064, 26156170..26156244,26156333..26156384,26156729..26156814, 26156932..26157327,26157420..26157846) /locus_tag="TCM_030194" /product="Cardiolipin synthetase 1 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01790.1" /inference="similar to AA sequence:TAIR:AT4G04870.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc392t6; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16959t1" mRNA join(<26155252..26155908,26155998..26156064, 26156170..26156244,26156333..26156384,26156729..26156814, 26156932..26157006,26157216..26157327,26157420..26157846) /locus_tag="TCM_030194" /product="Cardiolipin synthetase 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01790.1" /inference="similar to AA sequence:TAIR:AT4G04870.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc392t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16959t1" CDS join(<26155253..26155908,26155998..26156064, 26156170..26156244,26156333..26156384,26156729..26156814, 26156932..26157006,26157216..26157254) /locus_tag="TCM_030194" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cardiolipin synthetase 1 isoform 2" /protein_id="EOY28655.1" /db_xref="TAIR:AT4G04870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B8LKQ0" /translation="GKLTRGKCIYNSRRRRRLCRHHLPKPLQNLGKSKHNITFRRDSI SLFCLGLSVQSNASSMGIYRSLQALITKSPEKTRTFLTAASTSSTTCIIPPLSSPLFH SRVSPSSPSLSKWIAPFNGPLFLSSPPWKLSQSATPLWGNVAVFRKVQALNLDLVRGG AKFPVKIRFGAVLSDPRVSNRVETDREVDKEREAVVESFVNLPNLISMSRLVSGPLLG WMIANEMYGFAFVGLAISGATDWLDGYMARKMRINSVVGSYLDPLADKVLIGCVALSM VHNQLLHPGLVGLVVLRDVALVSGAVYQRASSLGWQWKSWLDFFNLDGTSPQKVEPLF ISKTSNFCRLTQFSS" CDS join(<26155253..26155908,26155998..26156064, 26156170..26156244,26156333..26156384,26156729..26156814, 26156932..26157045) /locus_tag="TCM_030194" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Cardiolipin synthetase 1 isoform 4" /protein_id="EOY28657.1" /db_xref="TAIR:AT4G04870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B8LKQ0" /translation="GKLTRGKCIYNSRRRRRLCRHHLPKPLQNLGKSKHNITFRRDSI SLFCLGLSVQSNASSMGIYRSLQALITKSPEKTRTFLTAASTSSTTCIIPPLSSPLFH SRVSPSSPSLSKWIAPFNGPLFLSSPPWKLSQSATPLWGNVAVFRKVQALNLDLVRGG AKFPVKIRFGAVLSDPRVSNRVETDREVDKEREAVVESFVNLPNLISMSRLVSGPLLG WMIANEMYGFAFVGLAISGATDWLDGYMARKMRINSVVGSYLDPLADKVLIGCVALSM VHNQLLHPGLVGLVVLRDVALVSGAVYQRASSLGWQWKSWLDFFNLDGTSPQKVEPLF ISKVSITLCFSDWVE" CDS join(<26155253..26155908,26155998..26156064, 26156170..26156244,26156333..26156384,26156712..26156746) /locus_tag="TCM_030194" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Cardiolipin synthetase 1 isoform 3" /protein_id="EOY28656.1" /db_xref="TAIR:AT4G04870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B8LKQ0" /translation="GKLTRGKCIYNSRRRRRLCRHHLPKPLQNLGKSKHNITFRRDSI SLFCLGLSVQSNASSMGIYRSLQALITKSPEKTRTFLTAASTSSTTCIIPPLSSPLFH SRVSPSSPSLSKWIAPFNGPLFLSSPPWKLSQSATPLWGNVAVFRKVQALNLDLVRGG AKFPVKIRFGAVLSDPRVSNRVETDREVDKEREAVVESFVNLPNLISMSRLVSGPLLG WMIANEMYGFAFVGLAISGATDWLDGYMARKMRINSVVGSYLDPLADKVLIGCVALSM VHNQLLHLFCAVKLDLSD" CDS join(26155430..26155908,26155998..26156064, 26156170..26156244,26156333..26156384,26156729..26156814, 26156932..26157006,26157233..26157327,26157420..26157513) /locus_tag="TCM_030194" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cardiolipin synthase isoform 1" /protein_id="EOY28654.1" /db_xref="TAIR:AT4G04870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B8LKQ0" /translation="MGIYRSLQALITKSPEKTRTFLTAASTSSTTCIIPPLSSPLFHS RVSPSSPSLSKWIAPFNGPLFLSSPPWKLSQSATPLWGNVAVFRKVQALNLDLVRGGA KFPVKIRFGAVLSDPRVSNRVETDREVDKEREAVVESFVNLPNLISMSRLVSGPLLGW MIANEMYGFAFVGLAISGATDWLDGYMARKMRINSVVGSYLDPLADKVLIGCVALSMV HNQLLHPGLVGLVVLRDVALVSGAVYQRASSLGWQWKSWLDFFNLDGTSPQKVEPLFI SKVNTVFQLILVASALLQPEFGTPETQSCITYLSWLVAATTVGSTLAYGAQYMRKRPR LIARES" gene complement(26158313..26160231) /locus_tag="TCM_030195" /note="dbxref CacaoGD:Thecc1EG030195" mRNA complement(26158313..26160231) /locus_tag="TCM_030195" /product="Pentatricopeptide repeat 336" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004801001" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09360.1" /inference="similar to AA sequence:TAIR:AT1G61870.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc259t4_C2" CDS complement(26158955..26160151) /locus_tag="TCM_030195" /codon_start=1 /product="Pentatricopeptide repeat 336" /protein_id="EOY28658.1" /db_xref="TAIR:AT1G61870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LE47" /translation="MALLSRVRASTTAATLRLRHFSILSPDSSTPLTSHQKTRAALSL LKSEQNPDRILEICRAASLTPASHLDRITFSVAISKLSEGKHFQSIDTFLHELRSRPD LQNERFASHSLILYGQAKMLNHALTAFDEFYNEGLCRSAKSLNALLVAGIVSKDYEEV KRIFVEFPKRYGIEPDLECYNSAIKAMCESGSSSSAYSILVDMKSKGVQPNATTFGTL LAGFYKEEKYEDVGKVLNLMKEYGVPVGVSTYNTRIQSLCMLKKSTEAKALLDGMLSR GMKPNTVTYNNLIHGFCKEGNLEEAKRLFKSMRNSGLEPDSQCYFTLVHFSCQGGDFE AALSICKESMEKNWVPSFSSMKSLVNGLSSMSKVEEAKELIQKVKEKFSKNADLWDEV EKSLPQ" mobile_element complement(26159247..26159299) /note="source:scaffold_7_CACTA_0779 5087 5139" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26160585..26160710) /note="source:scaffold_1_CACTA_0005 6263 6384" /mobile_element_type="transposon:TIR/CACTA" gene 26162868..26167221 /locus_tag="TCM_030196" /note="dbxref CacaoGD:Thecc1EG030196" mRNA join(26162868..26163530,26163931..26164021, 26164132..26164184,26164492..26164584,26164733..26164804, 26165029..26165101,26165248..26165293,26165439..26165502, 26165802..26165855,26166582..26166659,26166746..26166977) /locus_tag="TCM_030196" /product="Tobamovirus multiplication 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003618" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007481t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400028835" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc52t1_C2" mRNA join(26163030..26163595,26163996..26164021, 26164132..26164184,26164492..26164584,26164733..26164804, 26165029..26165101,26165248..26165293,26165439..26165502, 26165802..26165855,26166582..26166659,26166746..>26166814) /locus_tag="TCM_030196" /product="Tobamovirus multiplication 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29842.m003618" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007481t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400028835" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc336t10; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc52t1_C2" mRNA join(26163311..26163530,26163931..26164021, 26164132..26164184,26164492..26164584,26164733..26164804, 26165029..26165101,26165248..26165293,26165439..26165502, 26165846..26165855,26166582..26166659,26166746..26167221) /locus_tag="TCM_030196" /product="Tobamovirus multiplication 1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29842.m003618" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007481t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400028835" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc52t7_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc52t1_C2" CDS join(26163372..26163530,26163931..26164021, 26164132..26164184,26164492..26164584,26164733..26164804, 26165029..26165101,26165248..26165293,26165439..26165502, 26165802..26165855,26166582..26166659,26166746..26166838) /locus_tag="TCM_030196" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG007481t1" /codon_start=1 /product="Tobamovirus multiplication 1 isoform 1" /protein_id="EOY28659.1" /db_xref="Phytozome:PGSC0003DMP400028835" /db_xref="TAIR:AT4G21790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HRE1" /translation="MVRMRSIPLSLAPMELPAMVSDWWDEINESTQWQDGIFYALCAA YALVSSVALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAIVFGFHKQVFVLHPKV LTLVLLDLPGLLFFSTYTLLVLFWAEIYHQARSLPTDKLRIFYMSINGVIYFIQVCIW VYLWIDDNSVVEFIGKIFIAVVSFIAALGFLLYGGRLFFMLRRFPIESKGRRKKLHEV GSVTAICFTCFLIRCFVVVLSAFDSDASLDVLDHPVLNLIYYMVVEILPSALVLYILR KLPPKRISAQYHPIR" CDS join(26163372..26163595,26163996..26164021, 26164132..26164184,26164492..26164584,26164733..26164804, 26165029..26165101,26165248..26165293,26165439..26165502, 26165802..26165855,26166582..26166659,26166746..>26166814) /locus_tag="TCM_030196" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG007481t1" /codon_start=1 /product="Tobamovirus multiplication 1 isoform 2" /protein_id="EOY28660.1" /db_xref="Phytozome:PGSC0003DMP400028835" /db_xref="TAIR:AT4G21790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HRE1" /translation="MVRMRSIPLSLAPMELPAMVSDWWDEINESTQWQDGIFYALCAA YALVSSVALVISYLSSFDFQVYVLFLFFNLILMNFIVNGVRAIVFGFHKQVFVLHPKV LTLVLLDLPGLLFFSTYTLLVLFWAEIYHQARSLPTDKLRIFYMSINGVIYFIQVCIW VYLWIDDNSVVEFIGKIFIAVVSFIAALGFLLYGGRLFFMLRRFPIESKGRRKKLHEV GSVTAICFTCFLIRCFVVVLSAFDSDASLDVLDHPVLNLIYYMVVEILPSALVLYILR KLPPKRIS" CDS join(26163372..26163530,26163931..26164021, 26164132..26164184,26164492..26164584,26164733..26164804, 26165029..26165101,26165248..26165293,26165439..26165502, 26165846..26165855,26166582..26166619) /locus_tag="TCM_030196" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG007481t1" /codon_start=1 /product="Tobamovirus multiplication 1 isoform 3" /protein_id="EOY28661.1" /db_xref="Phytozome:PGSC0003DMP400028835" /db_xref="TAIR:AT4G21790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HRE1" /translation="MVRMRSIPLSLAPMELPAMVSDWWDEINESTQWQDGIFYALCAA YALVSSVALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAIVFGFHKQVFVLHPKV LTLVLLDLPGLLFFSTYTLLVLFWAEIYHQARSLPTDKLRIFYMSINGVIYFIQVCIW VYLWIDDNSVVEFIGKIFIAVVSFIAALGFLLYGGRLFFMLRRFPIESKGRRKKLHEV LCGGFICFRFRCIT" gene complement(26167737..26170207) /locus_tag="TCM_030197" /note="dbxref CacaoGD:Thecc1EG030197" mRNA complement(join(26167737..26168180,26168540..26168593, 26168814..26168897,26168990..26169204,26169323..26169422, 26169816..26170005)) /locus_tag="TCM_030197" /product="DERLIN-2.2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g11350.1" /inference="similar to AA sequence:Phytozome:Glyma15g11350.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09554t00001; inference alignment:Newbler:10:TSA:cgbaL_g09554t00001" CDS complement(join(26167998..26168180,26168540..26168593, 26168814..26168897,26168990..26169204,26169323..26169422, 26169816..26169914)) /locus_tag="TCM_030197" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DERLIN-2.2 isoform 1" /protein_id="EOY28662.1" /db_xref="Phytozome:Glyma15g11350.1" /db_xref="TAIR:AT4G04860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZ96" /translation="MAQAVEEWYKQMPIITRSYLTAAVVTTIGCSLEIISPYHLYLNP KLVVKQYQFWRLITNFLYFRKMDLDFMFHMFFLARYCKLLEENSFRGRTADFFYMLLF GASVLTGIVLIGGMIPYLSESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFT AAYLPWVLLGFSVLVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLRTPSFIKALF ADEAVVVARPANVRFAPPPGEEFHRD" mRNA complement(join(<26168811..26168897,26168990..26169204, 26169323..26169422,26169816..26170207)) /locus_tag="TCM_030197" /product="DERLIN-2.2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g11350.1" /inference="similar to AA sequence:Phytozome:Glyma15g11350.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc752t11; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc740t9_C1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16979t2" CDS complement(join(<26168811..26168897,26168990..26169204, 26169323..26169422,26169816..26169914)) /locus_tag="TCM_030197" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DERLIN-2.2 isoform 2" /protein_id="EOY28663.1" /db_xref="Phytozome:Glyma15g11350.1" /db_xref="TAIR:AT4G04860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZ96" /translation="MAQAVEEWYKQMPIITRSYLTAAVVTTIGCSLEIISPYHLYLNP KLVVKQYQFWRLITNFLYFRKMDLDFMFHMFFLARYCKLLEENSFRGRTADFFYMLLF GASVLTGIVLIGGMIPYLSESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFT AAYLPWV" gene complement(26170427..26172837) /locus_tag="TCM_030198" /note="dbxref CacaoGD:Thecc1EG030198" mRNA complement(join(26170427..26171361,26171423..26171634, 26171708..26172190,26172281..26172837)) /locus_tag="TCM_030198" /product="Cytochrome P450" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0021s00980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030948t1" /inference="similar to AA sequence:Phytozome:POPTR_0021s00980.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8446t1" CDS complement(join(26171152..26171361,26171423..26171634, 26171708..26172190,26172281..26172779)) /locus_tag="TCM_030198" /note="paralog of Thecc1EG030948t1" /codon_start=1 /product="Cytochrome P450" /protein_id="EOY28664.1" /db_xref="Phytozome:POPTR_0021s00980.1" /db_xref="TAIR:AT5G36110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ22" /translation="MNFTVCFTLFLFLVPLYLALTRKTSKELQPGSLGFPLIGQSLCF LRAMHTNTVEQWLQERIRKYGPISKLSLFATPTVFLHGQGANKFIFTTCDGNILSNQQ PPSVRRICGERNMTELAGDDHKRVRGAVVSFLKPEMLKQYVGKLDEEVRRHLDMHWHG NQKVMVNGFLFLSFSQLYMRVMPLMKSLTFNIMSSLIFGIEHGERRNTLVELLQHMMN GLVSLPINLPFTRFNRSLKASAKIRTLIKDLISERRAALEQRIAIPNKDLITCMLSFG NNDPSVLMSDEEIADNVIGAMIEGHDTSSVLITFLVRHLAKDQSVYENITKEQAEIAK TKTSGELLTWDDLARMKYTWRVAMETLRMNPPLLGSFRKVIKDFEYEGYTIPKGWQDC IILHLLVIWAACMTHMDKRIFPDPSKFDPTRFEKQASTPPYCFVAFGGGARICPGNEF ARIETLVTVHYLVTRFK" gene 26173358..26183202 /locus_tag="TCM_030199" /note="dbxref CacaoGD:Thecc1EG030199" mRNA join(26173358..26174417,26174652..26175123, 26175228..26175313,26175510..26175623,26175733..26175921, 26176033..26176098,26176359..26176415,26176603..26176725, 26176810..26176926,26177225..26177332,26177422..26177557, 26178309..26178446,26178917..26179093,26179182..26179924, 26180137..26180314,26180434..26180675,26180948..26181137, 26181588..26181813,26181906..26182061,26182187..26183202) /locus_tag="TCM_030199" /product="Binding,calmodulin binding, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003615" /inference="similar to AA sequence:ricco:29842.m003615" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc595t2" mRNA join(26173731..26174417,26174652..26175123, 26175228..26175313,26175510..26175623,26175733..26176098, 26176359..26176415,26176603..26176725,26176810..26176926, 26177225..26177332,26177422..26177557,26178309..26178446, 26178917..26179093,26179182..26179924,26180137..26180314, 26180434..>26180608) /locus_tag="TCM_030199" /product="Binding,calmodulin binding, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29842.m003615" /inference="similar to AA sequence:frave:gene19591" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc546t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc595t2" CDS join(26173782..26174417,26174652..26175123, 26175228..26175313,26175510..26175623,26175733..26175921, 26176033..26176098,26176359..26176415,26176603..26176725, 26176810..26176926,26177225..26177332,26177422..26177557, 26178309..26178446,26178917..26179093,26179182..26179924, 26180137..26180314,26180434..26180675,26180948..26181137, 26181588..26181813,26181906..26182061,26182187..26182277) /locus_tag="TCM_030199" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003615" /codon_start=1 /product="Binding,calmodulin binding, putative isoform 1" /protein_id="EOY28665.1" /db_xref="TAIR:AT4G21820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AVH6" /translation="MEEEPVTSSASSSFLLKDISNFKTPKRTSKNSNFHSPCPRFFTA SKQTPRSSLSFRPRSRPSLSSSRSRTAASSAAARKLKAFELEQCHSARKEQARKEQSL KSLSKSLTVWLNFLYRNPKSCGCDVSISGDDNNVVRVDSAWRSPKRMRELWWRGEESE NVAADISGSMYLALRSSLKEVFSFDDLKQRMRIYLRLGSCKEIFNVMTQVVKNIDEGR LKMKSHCPIVTDVGMKEKASKILMSYNPIWLRIGLYIVFGGESLLSSEEDNSSEQDIS FLKMVIDKQFFLHSGLAKAYAYNKKVEGLYRPGYYENLGNVILKRILLLVLILDRAKS QTSLPLEYGIDGVDGGSPLLFTVSSGIKSSRQVLNDFLSSDVMHGEGNLLAHLVIVGY KVSHQQSALVEFDFQVSDLFVDLQDGVRLCRAIQLLQHEPSILMKMIVPSDTHKKNLA NCGVALQYLRQAGVMLCDEDGMKITGDDVADGDKELTLSLLWNMFVHLQLPLLIDKTI IADEISKIRGFNMENLNAVNSTLLAMLLNWIQAICEKYDLKIDSFSSLVNGKAIWCLL DYYFRRELSCSCSNKDSHETRGEESIMSATDYTDAVHNFVLSQKLTALLGNFPEVLQI SDLLEHNGAVSDQSVVVLLVFLLSQLIVKKNVDQLNFHKLLGCNCQNLERRHSLTRRQ SASSEAVVHKKEIDKDTTEDAAKKFKAIQAWWRDMSERNYKSVVRPAGSTSYCLTARK SSIDIQRENAAIVIQSHFRRLIERRKFLKMMKAICLMQTVIRAWLTVKKHSELSKFSF SRVQEFPSEELKRLVEFIVERHSFVNLRRSVLLIQQAARIWIAQRHDASYPDLVKAAI VIQKCVRGWMVRSQHILGPAHIESASLMCREIGLSNSIIEAVTRIQIAWKKFVCRSLH NQNSAAIKIQSNYRGWRLRRSFMKQKQAITKIQSNFRRLKCWRAFQIAWKDFVYRSLQ NQTFAATKIQSHFRGWQLRRNFMKQKQTTIKIQSNFQRLICSSAFHQYKTAARSAIII QPHMRGWMARRKVQRYRYLIVVIQRHFRGWLVRKELMLQRSAVIKIQRAIRCLKCQKA FHFQKQAAIQIQQFIRGQITRNRLLGASSLYAATTGSCKFKMVEGLFQSFELTLVIAS VLKLQRWWRDVLLFKLRTKSAIIIQSHVRGWIARQKAYRERKHIVVIQSYWKGYLARK ESIGQLMDLRLRMLKSAMNVDDSRRIINRLLSALSELLSMKSISGILHICETLDMATA HSLKCCEELVAAGAIGILLKQIRSVSRSIPDQEVLKHALSTLRNLTRYPHLTEVLIDT PGSIEIILWELHRNKEEGYFIASEILKKICSNQKGVKAVRKFPALLKRLHNLVEELTR KANMEKRNPRGTVAIRENIERRLREAVELLKLITNG" CDS join(26173782..26174417,26174652..26175123, 26175228..26175313,26175510..26175623,26175733..26176098, 26176359..26176415,26176603..26176725,26176810..26176926, 26177225..26177332,26177422..26177557,26178309..26178446, 26178917..26179093,26179182..26179924,26180137..26180314, 26180434..>26180606) /locus_tag="TCM_030199" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene19591" /codon_start=1 /product="Binding,calmodulin binding, putative isoform 2" /protein_id="EOY28666.1" /db_xref="TAIR:AT4G21820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AVH6" /translation="MEEEPVTSSASSSFLLKDISNFKTPKRTSKNSNFHSPCPRFFTA SKQTPRSSLSFRPRSRPSLSSSRSRTAASSAAARKLKAFELEQCHSARKEQARKEQSL KSLSKSLTVWLNFLYRNPKSCGCDVSISGDDNNVVRVDSAWRSPKRMRELWWRGEESE NVAADISGSMYLALRSSLKEVFSFDDLKQRMRIYLRLGSCKEIFNVMTQVVKNIDEGR LKMKSHCPIVTDVGMKEKASKILMSYNPIWLRIGLYIVFGGESLLSSEEDNSSEQDIS FLKMVIDKQFFLHSGLAKAYAYNKKVEGLYRPGYYENLGNVILKRILLLVLILDRAKS QTSLPLEYGIDGVDGGSPLLFTVSSGIKSSRQVLNDFLSSDVMHGEGNLLAHLVIVGY KVSHQQSALVEFDFQVSDLFVDLQDGVRLCRAIQLLQHEPSILMKMIVPSDTHKKNLA NCGVALQYLRQAGVMLCDEDGMKITGDDVADGDKELTLSLLWNMFVHLQVCKSPLGLK FSDGSGFYRVFACVNSFSCALMFSLSLQLPLLIDKTIIADEISKIRGFNMENLNAVNS TLLAMLLNWIQAICEKYDLKIDSFSSLVNGKAIWCLLDYYFRRELSCSCSNKDSHETR GEESIMSATDYTDAVHNFVLSQKLTALLGNFPEVLQISDLLEHNGAVSDQSVVVLLVF LLSQLIVKKNVDQLNFHKLLGCNCQNLERRHSLTRRQSASSEAVVHKKEIDKDTTEDA AKKFKAIQAWWRDMSERNYKSVVRPAGSTSYCLTARKSSIDIQRENAAIVIQSHFRRL IERRKFLKMMKAICLMQTVIRAWLTVKKHSELSKFSFSRVQEFPSEELKRLVEFIVER HSFVNLRRSVLLIQQAARIWIAQRHDASYPDLVKAAIVIQKCVRGWMVRSQHILGPAH IESASLMCREIGLSNSIIEAVTRIQIAWKKFVCRSLHNQNSAAIKIQSNYRGWRLRRS FMKQKQAITKIQSNFRRLKCWRAFQIAWKDFVYRSLQNQTFAATKIQSHFRGWQLRRN FMKQKQTTIKIQSNFQRLICSSAFHQYKTAARSAIIIQPHMRGWMARRKVQRYRYLIV VIQRHFRGWLVRKELMLQRSAVIKIQRAIRCLKCQKAFHFQKQAAIQIQQFIRGQITR NRLLGASSLYAATTGSCKFKMVEGLFQSFELTLVIASVLKLQRWWRDVLLFKLRTKSA IIIQ" gene complement(26183416..26184167) /locus_tag="TCM_030200" /note="dbxref CacaoGD:Thecc1EG030200" mRNA complement(join(26183416..26183870,26183955..26184167)) /locus_tag="TCM_030200" /product="HSP20-like chaperones superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01002382001" /inference="similar to AA sequence:Phytozome:GSVIVT01002382001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15507t00001" CDS complement(join(26183602..26183870,26183955..26184102)) /locus_tag="TCM_030200" /codon_start=1 /product="HSP20-like chaperones superfamily protein" /protein_id="EOY28667.1" /db_xref="Phytozome:GSVIVT01002382001" /db_xref="TAIR:AT4G21870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ23" /translation="MEFPFPSYQLSPWHYLLSSPALFSNQLLPENYVRWTETPESHIY SADLPGVTKEEIKVELEDARYLVIRTEAVDELTKPVRNFTRKFRLPGMIDIDGISAGY EDGVLTVTVPRSFRRSGFYIDPADVPERLEVLARAA" gene complement(26184482..26187507) /locus_tag="TCM_030201" /note="dbxref CacaoGD:Thecc1EG030201" mRNA complement(join(26184482..26186928,26187029..26187111, 26187204..26187507)) /locus_tag="TCM_030201" /product="Zinc finger MYND domain-containing protein 15" /inference="alignment:exonerate- protein:2:ricco:29842.m003613" /inference="similar to AA sequence:ricco:29842.m003613" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8483t1" CDS complement(26185022..26186920) /locus_tag="TCM_030201" /note="dbxref ricco:29842.m003613" /codon_start=1 /product="Zinc finger MYND domain-containing protein 15" /protein_id="EOY28668.1" /db_xref="TAIR:AT4G21890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49712" /translation="MDFHLKNLFDRFQEQFGSGPGLGPGSGTCLMKVDGIASNFIKSI FKASAALYRTEPWRRLRPGHFFGVRVGKDSDWSGKKQPFPCAQFIGGDGGDIGFYMFR SENDAKKMTGSRETIRVANVELLRVTYELETLMFPSNRKMIKSLSLEASGTDRFPVID VARCTSSGELRFRNPTLGELKFVYAFMRAISLVHPLLRVDKEGGPNWSRLICFDPFIE TVDIQWPPEMARGHELVAVTISHPPGQAYDEKTSSTASSTPTKYAEPPNEDAFMDIRV NSNSSSRQCAMCEKEVNGDQSLCCGRCRAVVYCGSLCQKQHWKESHKSMCGLYKAMME REEELVMKIFMFPCSADHPCKWLESLGIHQKGMWRRKCSCYSHCPFGLLPAKGGLWDS WGGLDDEEYPRDSPFHNHLRDGISSPILLSGWSEYYNLRSLPLSSPVADILSHPLTVY YILTALSISSKNLLLKGKEVILHYLGPEGEMDWMPAFAEISHLLNGLGNIQIVMVGPE VPTNLSGTTSGISSRVRVNLVRGVYQEEATYLPSPHVIVALNCVLDRYATWGGALDLI KAMNIPAFFTEQSEILCANAKQVLRGAGLHITHPVTPNPFRSPVKNHDSSSNLPSYSN GFVLGVNT" gene 26188300..26192847 /locus_tag="TCM_030202" /note="dbxref CacaoGD:Thecc1EG030202" mRNA join(26188300..26188785,26189258..26189729, 26191240..26191286,26191363..26191493,26191590..26191686, 26191783..26192847) /locus_tag="TCM_030202" /product="RNA-binding family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400009048" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030913t1" /inference="similar to AA sequence:ricco:29842.m003612" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05876t00001" CDS join(26188441..26188785,26189258..26189729, 26191240..26191286,26191363..26191493,26191590..26191686, 26191783..26191956) /locus_tag="TCM_030202" /note="dbxref ricco:29842.m003612; paralog of Thecc1EG030913t1" /codon_start=1 /product="RNA-binding family protein" /protein_id="EOY28669.1" /db_xref="TAIR:AT1G11650.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SAB3" /translation="MMQQPAPGVVPPPMAPPPSMAAAPQSQQQYQYQQPPPPPQPQQP YMMMNMMPPQSQPPPMWPQQQGSAPVPGQQQQVGQAGQPASADEVRTLWIGDLQYYMD ENYLLGCFAQTGEVVSVKVIRNKQTGQVEGYGFIEFVSRGAAERVLQTYNGTPMPNGE NNYRLNWASFSSGERRDETPDFTIFVGDLAADVTDYMLQETFRARFPSVKGAKVVIDR LTGRTKGYGFVRFGDEAEHNRAMTEMNGVFCSTRPMRTGPATNKKTITAQQYPKASSQ GAQNENDPNNTTIFVGNLDSNVTDDHLREVFSPYGQLVHVKIPQNKRCGFVQFADRSC AEEALRMLNGTQLGGQSIRLSWGRSTSNKQPQADPNPWNGGYYGYAQGYDYGYAAAAP QDPNVYYGGYPGYGNYQQPQQQQQQVGYS" misc_feature join(26190135..26191286,26191363..26191417) /locus_tag="TCM_030202" /note="Gene fragment of Thecc1EG030202t1; dbxref gnl|CacaoGD|Thecc1EG030202t1; quality class is mediumpartial-partof is thecc1eg030202t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2t34; dbxref CacaoGD:Thecc1EG030204t1" gene complement(26193018..26198457) /locus_tag="TCM_030205" /note="dbxref CacaoGD:Thecc1EG030205" mRNA complement(join(26193018..26193388,26193532..26193710, 26194131..26194398,26194950..26194981,26195304..26195355, 26196038..26196122,26198175..26198256,26198449..26198457)) /locus_tag="TCM_030205" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040782t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc268t8" gene 26193140..26193976 /locus_tag="TCM_030206" /note="dbxref CacaoGD:Thecc1EG030206" mRNA 26193140..26193976 /locus_tag="TCM_030206" /product="F-box family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037140t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01020.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc268t17_C1" CDS 26193173..26193892 /locus_tag="TCM_030206" /note="paralog of Thecc1EG037140t1" /codon_start=1 /product="F-box family protein" /protein_id="EOY28671.1" /db_xref="Phytozome:POPTR_0013s01020.1" /db_xref="TAIR:AT1G67623.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6Z5" /translation="MKMRKSSNIQSLPREMLAEILKHAASNSITDFVNAQMSCKAFLG ASNDYQILENVSMANISFVPWYKNEKIFLKKCKDAKNSEALYRKGMINCFNRRKLESG LCYLKKAVEKGHFEAKYTYGIMLICLGAELKSQGLQIVSSLDLTSSNTRFKIASCRSK TENMLSSMWVYVSLDRPKESANNAKVNCKCDDIITPRPNRWEANNTLHDNLPCCDSCF WDHEATLFSSMLRKYLINKVH" CDS complement(join(26194154..26194398,26194950..26194981, 26195304..26195355,26196038..26196122,26198175..26198207)) /locus_tag="TCM_030205" /note="paralog of Thecc1EG040782t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28670.1" /translation="MPYRKRLMCYKDTGKKSLMELINEVPPIKVEARIVACEGGICKH HGRWQWQLLQPSSSITFSFEPFEALAKPLPELETLQKQHEEKTLKIQELKRQIVTVKL CLEKKKKKKKNIPDARKEAFNDLSEKYSSLREEYNALLAERSREQN" gene complement(26198334..26201724) /locus_tag="TCM_030208" /note="dbxref CacaoGD:Thecc1EG030208" mRNA complement(join(26198334..26199942,26201547..26201669)) /locus_tag="TCM_030208" /product="AT hook motif-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:frave:gene19595.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028702t2" /inference="similar to AA sequence:ricco:29842.m003611" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8529t3; alternateUTRof:Thecc1EG030208t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8529t1" mRNA complement(join(26198523..26199942,26201547..26201724)) /locus_tag="TCM_030208" /product="AT hook motif-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:frave:gene19595.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028702t2" /inference="similar to AA sequence:ricco:29842.m003611" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8529t1" CDS complement(26198572..26199867) /locus_tag="TCM_030208" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003611; paralog of Thecc1EG028702t2" /codon_start=1 /product="AT hook motif-containing protein, putative isoform 1" /protein_id="EOY28672.1" /db_xref="TAIR:AT5G52890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXM9" /translation="MSSQNQGASLCSSADTPMKRKRGRPRKDESVQGDSTPVTPASDI LMKNKQSMGTSNTASDEMVGQMVSGVIEGSFDAGYLLHVKVGDTNTHLRGVVFLPGRF TPVTAANDVAPHAKMYERKEISIPFVNPQSQHHAVGPPSGKSEKPVENKNDAPNLPDQ SLHTGLQSGGTTASESKSASILIPPASNLQINDTGLPLGQKVLKEQILGSRLQNDKAV VQDQSLEGFEALKLMKGPNIDVEAPKASEPVSATFTSTLPATDTVILKPQVEHQALSL DLKPQELIHDDVKSLDFGNNQTPKFPEPEPQSVACEPTGIKMFEKQASSRQDKDISQD TQPEHAKKIICGNDKSRMDGLSTSDTATTTVTVPCSVSTSLPIMIFGAETIPSESRPG AEESDVPRRVVSEVSSSSMAANTNSVESNAKDAIPPAQS" CDS complement(26198572..26199867) /locus_tag="TCM_030208" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003611; paralog of Thecc1EG028702t2" /codon_start=1 /product="AT hook motif-containing protein, putative isoform 1" /protein_id="EOY28673.1" /db_xref="TAIR:AT5G52890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXM9" /translation="MSSQNQGASLCSSADTPMKRKRGRPRKDESVQGDSTPVTPASDI LMKNKQSMGTSNTASDEMVGQMVSGVIEGSFDAGYLLHVKVGDTNTHLRGVVFLPGRF TPVTAANDVAPHAKMYERKEISIPFVNPQSQHHAVGPPSGKSEKPVENKNDAPNLPDQ SLHTGLQSGGTTASESKSASILIPPASNLQINDTGLPLGQKVLKEQILGSRLQNDKAV VQDQSLEGFEALKLMKGPNIDVEAPKASEPVSATFTSTLPATDTVILKPQVEHQALSL DLKPQELIHDDVKSLDFGNNQTPKFPEPEPQSVACEPTGIKMFEKQASSRQDKDISQD TQPEHAKKIICGNDKSRMDGLSTSDTATTTVTVPCSVSTSLPIMIFGAETIPSESRPG AEESDVPRRVVSEVSSSSMAANTNSVESNAKDAIPPAQS" gene 26201111..26205056 /locus_tag="TCM_030209" /note="dbxref CacaoGD:Thecc1EG030209" mRNA join(26201111..26201329,26202103..26203555, 26204028..26205056) /locus_tag="TCM_030209" /product="ATP binding cassette protein 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003610" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028701t1" /inference="similar to AA sequence:ricco:29842.m003610" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05162t00001" CDS join(26201268..26201329,26202103..26203555, 26204028..26204246) /locus_tag="TCM_030209" /note="dbxref ricco:29842.m003610; paralog of Thecc1EG028701t1" /codon_start=1 /product="ATP binding cassette protein 1" /protein_id="EOY28674.1" /db_xref="TAIR:AT4G04770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZS97" /translation="MGTNERNTIIFTNLKRQMNLSTAITMASLLANGISSFSPQPTSD STKFAKGFYPKLDSVKPITPKPPNSRLFKVRADVGFDSQTLTSDPSSSSGKSYDEKIQ EILRNRDYDKKFGFTMDIDSFSIPKGLSKETIRLISSLKEEPDWMLEFRLHAYEKFLK MNEPKWSDNRYPPINFQDICYYSAPKKKPTLNSLDEADPELLKYFDRLGVPLNERNRL ANVAVDAVLDSVSIATTHRKTLEKAGVIFCSISEAIREYPDLVRKYLGRVVPSEDNYY AALNSAVFSDGSFCYIPKDTKCPMPISTYFRINALETGQFERTLIVADEGSFVEYLEG CTAPSYDRNQLHAAVVELHCANGAEIKYSTVQNWYAGDEEGKGGIYNFVTKRGLCAGD HSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGRNT RSRIISKGISAGNSRNCYRGLVQVQSKAENARNSSQCDSMLIGDMAAANTYPYIQVKN PSARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQ LMSLKLEGSVG" gene 26205680..26206273 /locus_tag="TCM_030210" /note="dbxref CacaoGD:Thecc1EG030210" mRNA 26205680..26206273 /locus_tag="TCM_030210" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g11400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028700t1" /inference="similar to AA sequence:ricco:29842.m003609" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8487t1" CDS 26205754..26206086 /locus_tag="TCM_030210" /note="dbxref ricco:29842.m003609; paralog of Thecc1EG028700t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28675.1" /translation="MANLRRSYAYSKVDKEDPEEIIHRRAQFLIYKVLEQADSKRKPS FLRIRLCRLKVKIGRRLKKLRKCALVSISAARGGAYKQVIDQLKTWRRLFSRGGGTIS SLPRPLLA" gene complement(26207223..26212854) /locus_tag="TCM_030211" /note="dbxref CacaoGD:Thecc1EG030211" mRNA complement(join(26207223..26207741,26207973..26208059, 26208143..26208261,26208345..26208583,26208810..26208866, 26209922..26210553,26210655..26211073,26212665..26212854)) /locus_tag="TCM_030211" /product="MATE efflux family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene19600" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030212t1" /inference="similar to AA sequence:ricco:29842.m003608" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8509t3" mRNA complement(join(26207347..26207741,26207973..26208059, 26208143..26208261,26208345..26208586,26208810..26208866, 26209922..26210553,26210655..26211034)) /locus_tag="TCM_030211" /product="MATE efflux family protein, expressed isoform 2" /inference="alignment:exonerate-protein:2:frave:gene19600" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030212t1" /inference="similar to AA sequence:ricco:29842.m003608" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8509t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8509t3" CDS complement(join(26207676..26207741,26207973..26208059, 26208143..26208261,26208345..26208583,26208810..26208866, 26209922..26210553,26210655..26211002)) /locus_tag="TCM_030211" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003608; paralog of Thecc1EG030212t1" /codon_start=1 /product="MATE efflux family protein isoform 1" /protein_id="EOY28676.1" /db_xref="TAIR:AT1G61890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10HY1" /translation="MDSQQELNQPILNSMHDHQPPPQPESGASTSHRYVDSRLEKVLS DPELSFFKRLRLASWIELRLIFSLAAPAIFVYMINNAMSLSTRVFCGHLGNLELAAAS LGNSGVQLFAYGLMLGMGSAVETLCGQAYGALRYNMLGVYLQRSTIVLTLTGIPLALA YVFSKPILILLGESAMVASASAVFVYGLIPQIFAYAVNFPMQKFLQAQSIVNPSAYIS AAALGVHLLLSWLAVYKLGLGLIGASLVLSLSWWIIVVAQMVYILTSKKCKLTWLGLS LQAFSGLVDFFKLSAASAVMLCLETWYFQVLVLIAGLLENPELSLDSLSICMSISAFL LMVSVGFNAAASVRVSNELGAGHPKSVAFTVAVVTLVSFIISVVEAVVVLALRHVISY AFTDGEAVADAVSDLCPFLAVTLILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYVVGI PLGCLLGFKFGLGAKGIWSGMIGGTLMQTIVLLWVTFRTDWNKEVETARKRLDKWEDK KEPLLKN" CDS complement(join(26207676..26207741,26207973..26208059, 26208143..26208261,26208345..26208586,26208810..26208866, 26209922..26210553,26210655..26211002)) /locus_tag="TCM_030211" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003608; paralog of Thecc1EG030212t1" /codon_start=1 /product="MATE efflux family protein, expressed isoform 2" /protein_id="EOY28677.1" /db_xref="TAIR:AT1G61890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10HY1" /translation="MDSQQELNQPILNSMHDHQPPPQPESGASTSHRYVDSRLEKVLS DPELSFFKRLRLASWIELRLIFSLAAPAIFVYMINNAMSLSTRVFCGHLGNLELAAAS LGNSGVQLFAYGLMLGMGSAVETLCGQAYGALRYNMLGVYLQRSTIVLTLTGIPLALA YVFSKPILILLGESAMVASASAVFVYGLIPQIFAYAVNFPMQKFLQAQSIVNPSAYIS AAALGVHLLLSWLAVYKLGLGLIGASLVLSLSWWIIVVAQMVYILTSKKCKLTWLGLS LQAFSGLVDFFKLSAASAVMLCLETWYFQVLVLIAGLLENPELSLDSLSICMSISAFL LMVSVGFNAAASSVRVSNELGAGHPKSVAFTVAVVTLVSFIISVVEAVVVLALRHVIS YAFTDGEAVADAVSDLCPFLAVTLILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYVVG IPLGCLLGFKFGLGAKGIWSGMIGGTLMQTIVLLWVTFRTDWNKEVETARKRLDKWED KKEPLLKN" gene complement(26213412..26217573) /locus_tag="TCM_030212" /note="dbxref CacaoGD:Thecc1EG030212" mRNA complement(join(26213412..26213765,26214037..26214123, 26214230..26214348,26214444..26214682,26214880..26214936, 26215721..26216352,26216444..26216866,26217119..26217573)) /locus_tag="TCM_030212" /product="MATE efflux family protein" /inference="alignment:exonerate-protein:2:frave:gene19600" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030211t1" /inference="similar to AA sequence:ricco:29842.m003608" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05389t00001" CDS complement(join(26213700..26213765,26214037..26214123, 26214230..26214348,26214444..26214682,26214880..26214936, 26215721..26216352,26216444..26216803)) /locus_tag="TCM_030212" /note="dbxref ricco:29842.m003608; paralog of Thecc1EG030211t1" /codon_start=1 /product="MATE efflux family protein" /protein_id="EOY28678.1" /db_xref="TAIR:AT3G21690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10HY1" /translation="MDSQQELNQPILNYSMHDQLPPPPVPEPSGVTHHRGHEVDSRLE KVLTDSDLSFFKRLRLASGIELRLLFRLAAPAVFVYMINNAMSLSTRVFCGHLGNLEL AAASLGNSGIQLLAYGLMLGMGSAVETLCGQAYGALRYDMLGVYLQRSTIVLTLTGIP LTVAYVLSEPILILLGESTVVASAAAVFVYGLIPQIFAYAVNFPIQKFLQAQSIVTPS AYISAATLGVHLLLSWLAVYKLGLGLIGASLVLSLSWWIIVVAQMVYILMSEKCKLTW AGLSLQAFSGLWDFLKLSAASAVMLCLETWYFQILVLIAGLLENPELALDSLSICMAI SGLLFMVSVGFNAAASVRVSNELGAGHPKSAAYTVFVVTLVSFVIAVVEAVVVLALRD VISYAFTEGETVAKAVSDLCPFLAVTLILNGVQPVLSGVAVGCGWQAFVAYVNVGCYY VVGIPLGCVLGFKFGLGAKGIWSGMIGGTLMQTVILLWVTFTTDWNKEVETAKKRLDR WEDKKEPLLKD" gene complement(26219162..26223347) /locus_tag="TCM_030213" /note="dbxref CacaoGD:Thecc1EG030213" mRNA complement(join(26219162..26219703,26219857..26219943, 26220018..26220136,26220330..26220568,26220682..26220738, 26220939..26221570,26221677..26222061,26223128..26223347)) /locus_tag="TCM_030213" /product="MATE efflux family protein" /inference="alignment:exonerate- protein:2:ricco:29842.m003606.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030211t1" /inference="similar to AA sequence:frave:gene19601" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc3558t1" CDS complement(join(26219641..26219703,26219857..26219943, 26220018..26220136,26220330..26220568,26220682..26220738, 26220939..26221570,26221677..26222018)) /locus_tag="TCM_030213" /note="dbxref frave:gene19601; paralog of Thecc1EG030211t1" /codon_start=1 /product="MATE efflux family protein" /protein_id="EOY28679.1" /db_xref="TAIR:AT3G21690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10HY1" /translation="MIMASENRIDCAENEVHQPLLHYYKSFSPEPCVSDLLEDTLSDN SLSLFWRIQRATWIELGILFHLAAPAVVVYLFNNLISMSTQIFCGHLGNLELAAASLG NNGIQTFAYGLMLGMGSAVETLCGQAYGANKYGMLGIYLQRSTILLMATGIPLMIIYI FSKPILLLLGESPTIASAAAVFTYGLIPQIFAYAANFPIQKFLQAQSIVFPSACISAA ALALHLLMSWLAIFKLGWGLLGASLVLSLSWWIVVAAQFVYIVMTEKCKHTWTGFSLQ AFSGLWDFLKLSVASAVMLCLETWYYQIIVLIAGLLKNAEIALDALSICMTICGWAYM IAVGFNAAASVRVSNELGAGHPKSAAFSVVIVTSSSFIIAAIFAILVLVLRRVMSYAF TSGSTVADAVSELSPYLAISVLLNGIQPVLTGVAVGCGWQAFVAYVNVGCFYFVGIPL GCVLGFKFDFGAKGIWSGMMGGTVIQTLILMYVTFRTDWTKEVEKTRNRLDRWEDKKE PLLN" mobile_element 26222080..26222801 /note="source:CACAO_on_E373_scaffold_1 5 728" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(26223406..26228737) /locus_tag="TCM_030214" /note="dbxref CacaoGD:Thecc1EG030214" mRNA complement(join(26223406..26224322,26224555..26224599, 26224726..26224869,26225308..26225319,26225461..26225706, 26226076..26226681,26226769..26226948,26228210..26228524)) /locus_tag="TCM_030214" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012736001" /inference="similar to AA sequence:ricco:29842.m003602" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17006t1" mRNA complement(join(26223846..26224322,26224422..26224599, 26224726..26224869,26225308..26225706,26226076..26226681, 26226769..26226948,26228210..26228576)) /locus_tag="TCM_030214" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012736001" /inference="similar to AA sequence:ricco:29842.m003602" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8634t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17006t1" CDS complement(join(26224246..26224322,26224555..26224599, 26224726..26224869,26225308..26225319,26225461..26225706, 26226076..26226681,26226769..26226948,26228210..26228279)) /locus_tag="TCM_030214" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003602" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY28680.1" /db_xref="TAIR:AT1G61900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ33" /translation="MSAGVSLKHRVIMFLLELFVFFACFRECLSSPLDHVKGYMLTDR RADAFVPEITPSASPQPFLPLLAPSPLSPFTNSSVPKLSGLCILNFTAAQSLMSMTSI DCWAAFAPLLANVICCPQLHATLVILVGQSSKDTGVLALNRTLANPCLSDIEKVLEGQ GAGENLKQICSIHPSNLTEASCPVKDVDEFESTVNSSELLASCEKIDPVKECCDQVCQ GAISEAAIRLALKASDPLNMDVPHVLPEHSTRVNDCKTVVLRWLASKLDPYRAKEVLR GLTNCNVNKVCPLVFPNMRHVANSCWNGINNQTACCDAMDSYVSHLQKQTLITNLQAL DCATSLGLKLQKYNITRNVYSQCHISLKDFSLQVGSQVSGCLLPSLPSDATFDKFSGI SFICDLNDNIPAPWPTLSLLPASSCKKSVRIPALPAATNAQTGLYNEYVAVYLLIASS MAIMMLLQF" mRNA complement(join(26224726..26224869,26225308..26225322, 26225465..26225706,26226076..26226681,26226769..26226948, 26228210..26228737)) /locus_tag="TCM_030214" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012736001" /inference="similar to AA sequence:ricco:29842.m003602" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc406t9; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17006t1" CDS complement(join(26224789..26224869,26225308..26225322, 26225465..26225706,26226076..26226681,26226769..26226948, 26228210..26228279)) /locus_tag="TCM_030214" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29842.m003602" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY28682.1" /db_xref="TAIR:AT1G61900.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ33" /translation="MSAGVSLKHRVIMFLLELFVFFACFRECLSSPLDHVKGYMLTDR RADAFVPEITPSASPQPFLPLLAPSPLSPFTNSSVPKLSGLCILNFTAAQSLMSMTSI DCWAAFAPLLANVICCPQLHATLVILVGQSSKDTGVLALNRTLANPCLSDIEKVLEGQ GAGENLKQICSIHPSNLTEASCPVKDVDEFESTVNSSELLASCEKIDPVKECCDQVCQ GAISEAAIRLALKASDPLNMDVPHVLPEHSTRVNDCKTVVLRWLASKLDPYRAKEVLR GLTNCNVNKVCPLVFPNMRHVANSCWNGINNQTACCDAMDSYVSHLQKQTLITNLQAL DCATSLGLKLQKYNITRNVYSQCHISLKDFSLQLEVRYLDASCQACPLMRHLTSSLVL VSFAI" mRNA complement(join(<26224841..26224869,26225461..26225706, 26226076..26226681,26226769..26226948,26228210..26228651)) /locus_tag="TCM_030214" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012736001" /inference="similar to AA sequence:ricco:29842.m003602" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc411t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17006t1" CDS complement(join(<26224841..26224869,26225461..26225706, 26226076..26226681,26226769..26226948,26228210..26228279)) /locus_tag="TCM_030214" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29842.m003602" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY28683.1" /db_xref="TAIR:AT1G61900.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ33" /translation="MSAGVSLKHRVIMFLLELFVFFACFRECLSSPLDHVKGYMLTDR RADAFVPEITPSASPQPFLPLLAPSPLSPFTNSSVPKLSGLCILNFTAAQSLMSMTSI DCWAAFAPLLANVICCPQLHATLVILVGQSSKDTGVLALNRTLANPCLSDIEKVLEGQ GAGENLKQICSIHPSNLTEASCPVKDVDEFESTVNSSELLASCEKIDPVKECCDQVCQ GAISEAAIRLALKASDPLNMDVPHVLPEHSTRVNDCKTVVLRWLASKLDPYRAKEVLR GLTNCNVNKVCPLVFPNMRHVANSCWNGINNQTACCDAMDSYVSHLQKQTLITNLQAL DCATSLGLKLQKYNITRNVYSQCHISLKDFSLQVSGCLLPSLP" mRNA complement(join(26224845..26225706,26226076..26226681, 26226769..26226948,26228210..26228737)) /locus_tag="TCM_030214" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012736001" /inference="similar to AA sequence:ricco:29842.m003602" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc406t7; alternateUTRof:Thecc1EG030214t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17006t1" CDS complement(join(26225456..26225706,26226076..26226681, 26226769..26226948,26228210..26228279)) /locus_tag="TCM_030214" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003602" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY28681.1" /db_xref="TAIR:AT1G61900.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ33" /translation="MSAGVSLKHRVIMFLLELFVFFACFRECLSSPLDHVKGYMLTDR RADAFVPEITPSASPQPFLPLLAPSPLSPFTNSSVPKLSGLCILNFTAAQSLMSMTSI DCWAAFAPLLANVICCPQLHATLVILVGQSSKDTGVLALNRTLANPCLSDIEKVLEGQ GAGENLKQICSIHPSNLTEASCPVKDVDEFESTVNSSELLASCEKIDPVKECCDQVCQ GAISEAAIRLALKASDPLNMDVPHVLPEHSTRVNDCKTVVLRWLASKLDPYRAKEVLR GLTNCNVNKVCPLVFPNMRHVANSCWNGINNQTACCDAMDSYVSHLQKQTLITNLQAL DCATSLGLKLQKYNITRNVYSQCHISLKDFSLQG" CDS complement(join(26225456..26225706,26226076..26226681, 26226769..26226948,26228210..26228279)) /locus_tag="TCM_030214" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29842.m003602" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY28684.1" /db_xref="TAIR:AT1G61900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ33" /translation="MSAGVSLKHRVIMFLLELFVFFACFRECLSSPLDHVKGYMLTDR RADAFVPEITPSASPQPFLPLLAPSPLSPFTNSSVPKLSGLCILNFTAAQSLMSMTSI DCWAAFAPLLANVICCPQLHATLVILVGQSSKDTGVLALNRTLANPCLSDIEKVLEGQ GAGENLKQICSIHPSNLTEASCPVKDVDEFESTVNSSELLASCEKIDPVKECCDQVCQ GAISEAAIRLALKASDPLNMDVPHVLPEHSTRVNDCKTVVLRWLASKLDPYRAKEVLR GLTNCNVNKVCPLVFPNMRHVANSCWNGINNQTACCDAMDSYVSHLQKQTLITNLQAL DCATSLGLKLQKYNITRNVYSQCHISLKDFSLQG" gene complement(26228857..26234254) /locus_tag="TCM_030216" /note="dbxref CacaoGD:Thecc1EG030216" mRNA complement(join(26228857..26229451,26229587..26230344, 26234027..26234254)) /locus_tag="TCM_030216" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29842.m003601" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16986t1" CDS complement(join(26229431..26229451,26229587..26229931)) /locus_tag="TCM_030216" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28685.1" /translation="MGNCLRHGKASWDDDDWGSLASTHRQEDDDGEVINITEKESLLG AKRVASLSSSSPSTREVKITISKKELEQLVRKVDMQGLTLEQVLVSMVKGGDVYELEH HRPWKPVLQSIPEVIVHRE" gene 26235979..26239640 /locus_tag="TCM_030217" /note="dbxref CacaoGD:Thecc1EG030217" mRNA join(26235979..26236562,26237060..26237149, 26237608..26239640) /locus_tag="TCM_030217" /product="F11F12.2-like protein" /inference="alignment:exonerate- protein:2:ricco:29842.m003600" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030888t1" /inference="similar to AA sequence:ricco:27777.m000267" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1433t1" CDS join(26236248..26236562,26237060..26237149, 26237608..26239167) /locus_tag="TCM_030217" /note="dbxref ricco:27777.m000267; paralog of Thecc1EG030888t1" /codon_start=1 /product="F11F12.2-like protein" /protein_id="EOY28686.1" /db_xref="TAIR:AT1G50660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LPT5" /translation="MNSSGGTHSPATFCRKTRRRRRCGTGAPSTPLLHWTFYNNNDEK KKHPHHQQQHPSARAGAGGRHLELSARKLAAGLWQLRPSAELSCRRNGGFACKRRSSD RFRPGKRGSDTKHDQLRRSQSTILGPKQGTLYNHESVFPHSKSVTEGATKWDSRCLKT PIEAYCFVSHMKLLEDQVKTVSFVSALQAKLVRAQLYIHDLESEVRSSRKKVKYLLRK LGEERMAQNKKVHDNIYALIDDLKGQLSRERKNQQGMEILNSQLVKELAEAKFSATKL IQKYEEEKRTRALMEEVCNQLATKIGEDKAEVEDLRIEIVKIREEVEEERKMLQMAEV WREERVQMKLSDAKLALESKYSQMNKLITVLETFLRSRSASLGVTELRTAEVIGQAVI SVSNIQDIEEFSYEPLRSGDIFSNFEGLQQVEVSEREIEPCFNYCSTGDVSNYHPACP ETNNHGNDGVPKHSSAFVDYNSGMEEDSRGQERVNHAENQGSSYCFEEIMNIVGGCKN APRCEIEWAETTGGNTPNTEISEICSISAEWSKRKKSSAKLRTPCASSSGYKAISDDG DGRLSSGTVSSLGTIFPSRKSVKGGLRHQNSMGQWGSRDLVNPHIARGMKGSIEWPRV LQKNTLKAKHWKPGLKERKFSCTDTAPVDS" mobile_element complement(26239540..26239718) /note="source:CACAO_M_E49279_F74_scaffold_6 1757 1936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26239820..26239901 /note="source:INTACT7724F_F100_scaffold_143-int 2245 2316" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(26240065..26241015) /note="source:CACAO_M_E49279_F74_scaffold_6 1004 1936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26245470..26245486 /note="source:scaffold_3_CACTA_0392 1208 1268" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26245487..26245531) /note="source:INTACT120_F22_scaffold_3-int 8109 8159" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26245495..26245558 /note="source:CACAO_M_S_E144962_F231_scaffold_10 1435 1496" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 26248858..26249845 /locus_tag="TCM_030219" /note="dbxref CacaoGD:Thecc1EG030219" mRNA 26248858..26249845 /locus_tag="TCM_030219" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01560.1" /inference="similar to AA sequence:Phytozome:POPTR_0021s00760.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g16995t1" CDS 26248871..26249524 /locus_tag="TCM_030219" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28687.1" /db_xref="Phytozome:POPTR_0021s00760.1" /db_xref="TAIR:AT1G11700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1B6" /translation="MAKGRRLTTSRSERFLGSYSYGHSLGDAVTDEPELGEEDVWSMV DNVAERDDQNVNNSQSEWSPRAEAENNGNGNVDVRGGRRRVPRGDRHVGGLSLAFEDS SSTKPRIVHQFRGHDGMAAAASPRGHHMATSAPVNVPDWSKIYRVDSVESIHDSDDGL DDGDSEMVPPHEYLAREYARSKKMGGASVFEGVGRTLKGRDLRRVRDAVWSQTGFDG" gene 26252450..26257221 /locus_tag="TCM_030220" /note="dbxref CacaoGD:Thecc1EG030220" mRNA join(26252450..26253550,26253953..26254096, 26254215..26254367,26254624..26254739,26255481..26255648, 26255761..26255884,26256278..26256377,26256460..26256930) /locus_tag="TCM_030220" /product="Calcium-dependent protein kinase 21 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0021s00750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030876t1" /inference="similar to AA sequence:ricco:29842.m003597" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc136t2; inference alignment:Newbler:10:TSA:cgbaB_g05347t00001" mRNA join(26252582..26253550,26253953..26254096, 26254215..26254367,26254624..26254739,26255481..26255648, 26255761..26256377,26256460..26257221) /locus_tag="TCM_030220" /product="Calcium-dependent protein kinase 21 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0021s00750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030876t1" /inference="similar to AA sequence:ricco:29842.m003597" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:PASA:2:TSA:puevd3b029227t1a2; inference alignment:Newbler:10:TSA:cgbaB_g05347t00001" mRNA join(26252582..26253550,26253953..26254096, 26254215..26254367,26254624..26254739,26255481..26255648, 26255761..26255888,26256278..26256377,26256460..26257221) /locus_tag="TCM_030220" /product="Calcium-dependent protein kinase 21 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0021s00750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030876t1" /inference="similar to AA sequence:ricco:29842.m003597" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05347t00001" CDS join(26252818..26253550,26253953..26254096, 26254215..26254367,26254624..26254739,26255481..26255648, 26255761..26255888,26256278..26256377,26256460..26256534) /locus_tag="TCM_030220" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003597; paralog of Thecc1EG030876t1" /codon_start=1 /product="Calcium-dependent protein kinase 21 isoform 1" /protein_id="EOY28688.1" /db_xref="TAIR:AT4G04720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49717" /translation="MGCCGSKHKLSEPDYKDYRSGMPPSRPVQPASQPQPVQTQKMSV PQIQAPQMRQPQPIPAPLKPSPASSRPVQGQETILGKPLEDIKQYYTLGKELGRGQFG ITYLCTENSTGNTYACKSILKRKLKNKQDREDIKKEVQIMQHLSGQPNIVEFRGAYED RQSVHLVMELCAGGELFDRITAQGHYSERAAAAICRSVVNVVHICHFMGVMHRDLKPE NFLLSSKDEGAMLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRSYGKEIDIWSA GIILYILLSGVPPFWAETEKGIFDAITEGELHFESQPWPSISESAKDLIRKMLTMDPK KRLTSAQVLEHPWMREGGEASDKPIDSAVLSRLKQFRAMNKLKKLALKVIAENLSEEE IKGLKAMFTNMDTDKSGTITYEELKAGLARLGSKLSEAEVKQLMQAADVDGNGTIDYI EFISATMHRYRLERDEHLYKAFQYFDKDNSGYITKDELETAMKEYGMGDEASIREVIS EVDTDNDGKINYEEFCTMMRSGTQQTGKPF" CDS join(26252818..26253550,26253953..26254096, 26254215..26254367,26254624..26254739,26255481..26255648, 26255761..26255884,26256278..26256300) /locus_tag="TCM_030220" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003597; paralog of Thecc1EG030876t1" /codon_start=1 /product="Calcium-dependent protein kinase 21 isoform 2" /protein_id="EOY28689.1" /db_xref="TAIR:AT4G04720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49717" /translation="MGCCGSKHKLSEPDYKDYRSGMPPSRPVQPASQPQPVQTQKMSV PQIQAPQMRQPQPIPAPLKPSPASSRPVQGQETILGKPLEDIKQYYTLGKELGRGQFG ITYLCTENSTGNTYACKSILKRKLKNKQDREDIKKEVQIMQHLSGQPNIVEFRGAYED RQSVHLVMELCAGGELFDRITAQGHYSERAAAAICRSVVNVVHICHFMGVMHRDLKPE NFLLSSKDEGAMLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRSYGKEIDIWSA GIILYILLSGVPPFWAETEKGIFDAITEGELHFESQPWPSISESAKDLIRKMLTMDPK KRLTSAQVLEHPWMREGGEASDKPIDSAVLSRLKQFRAMNKLKKLALKVIAENLSEEE IKGLKAMFTNMDTDKSGTITYEELKAGLARLGSKLSEAEVKQLMQAADVDGNGTIDYI EFISATMHRYRLERDEHLYKAFQYFDKDNSTSQRMN" CDS join(26252818..26253550,26253953..26254096, 26254215..26254367,26254624..26254739,26255481..26255648, 26255761..26255892) /locus_tag="TCM_030220" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29842.m003597; paralog of Thecc1EG030876t1" /codon_start=1 /product="Calcium-dependent protein kinase 21 isoform 3" /protein_id="EOY28690.1" /db_xref="TAIR:AT4G04720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49717" /translation="MGCCGSKHKLSEPDYKDYRSGMPPSRPVQPASQPQPVQTQKMSV PQIQAPQMRQPQPIPAPLKPSPASSRPVQGQETILGKPLEDIKQYYTLGKELGRGQFG ITYLCTENSTGNTYACKSILKRKLKNKQDREDIKKEVQIMQHLSGQPNIVEFRGAYED RQSVHLVMELCAGGELFDRITAQGHYSERAAAAICRSVVNVVHICHFMGVMHRDLKPE NFLLSSKDEGAMLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRSYGKEIDIWSA GIILYILLSGVPPFWAETEKGIFDAITEGELHFESQPWPSISESAKDLIRKMLTMDPK KRLTSAQVLEHPWMREGGEASDKPIDSAVLSRLKQFRAMNKLKKLALKVIAENLSEEE IKGLKAMFTNMDTDKSGTITYEELKAGLARLGSKLSEAEVKQLMQAADVDGNGTIDYI EFISATMHRYRLERDEHLYKAFQYFDKDNSG" gene 26258062..26264065 /locus_tag="TCM_030221" /note="dbxref CacaoGD:Thecc1EG030221" mRNA join(26258062..26258653,26259496..26259795, 26260255..26261184,26261421..26261611,26261836..26262042, 26262346..26262406,26262938..26263797) /locus_tag="TCM_030221" /product="Homer protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003596" /inference="similar to AA sequence:Phytozome:POPTR_0004s01520.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1690t1" mRNA join(26259392..26259795,26260318..26261184, 26261421..26261611,26261836..26262042,26262346..26262406, 26262938..26264065) /locus_tag="TCM_030221" /product="Homer protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29842.m003596" /inference="similar to AA sequence:ricco:29842.m003596" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1748t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1690t1" CDS join(26259580..26259795,26260255..26261184, 26261421..26261611,26261836..26262042,26262346..26262406, 26262938..26263543) /locus_tag="TCM_030221" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Homer protein isoform 1" /protein_id="EOY28691.1" /db_xref="Phytozome:POPTR_0004s01520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1B3" /translation="MVELQSCASLVNASALCAIEQEMKGESVNVIAEIAAELQREREK NAELMKRISSLEAQIQEREKESLLTNEKLNPSKSLLSLLNGLASYVLSQVSCLDTTER SLKRFKRQKIETYSHRTEDGKSSKTEMASKAENGTQCMPSTDENQDDRLVNWMSMDET LFSHFDKFKDSDLAADREDTDDSDDEDEYYEEDDPNTGYKDRETEENLRSAYEEQPHE DGVGPGMHISCLQSYSTSQSELTFTNSSQLIKENREKDYTLQDIQVVFNRNNPKYVMK ETEKNGEHKSPADMATSGQEPCQTVSGKTSSNKKPPKVPFCPKEIRKILASDALLLKN AQSHTIRKIIVFASLGIRNGCEDMYELDFNHFSILRKGDPYVSPKNPGEHVLYENPGV QRKVFYPNRQNPTLCPVQILEEEKTMRPSDPCCPSCLFLCIKYGGRTRNLPQNEYVRQ RMGRNKLKSFGPVMCRMAMLVHIRSGSFFFKALGITLLFMAGFPDDLVQRETKYRNLD LLQKYYRTDEDAEDEELFLSHPIAFDTARPSSQQLTGKTTSTKSKGRRQTNSSSKSHN FPKASVQESAPSSSTPGTQFGLMGYTSIQTQAMAAFQSTQSQTPAETTQVSNPMMKSL GNNVSYHNQTAYHLFPPQPANTFMPMVYWPPPVVFPPSPYPTSYGYRSYPTNANNISI HPQPYYNHPSSSSFIPKIIERNRTDVSASLEPDSDSDSSLSSSEEPKEALASCR" CDS join(26259580..26259795,26260318..26261184, 26261421..26261611,26261836..26262042,26262346..26262406, 26262938..26263543) /locus_tag="TCM_030221" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003596" /codon_start=1 /product="Homer protein isoform 2" /protein_id="EOY28692.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1B3" /translation="MVELQSCASLVNASALCAIEQEMKGESVNVIAEIAAELQREREK NAELMKRISSLEAQIQEREKESLLTNEKVSCLDTTERSLKRFKRQKIETYSHRTEDGK SSKTEMASKAENGTQCMPSTDENQDDRLVNWMSMDETLFSHFDKFKDSDLAADREDTD DSDDEDEYYEEDDPNTGYKDRETEENLRSAYEEQPHEDGVGPGMHISCLQSYSTSQSE LTFTNSSQLIKENREKDYTLQDIQVVFNRNNPKYVMKETEKNGEHKSPADMATSGQEP CQTVSGKTSSNKKPPKVPFCPKEIRKILASDALLLKNAQSHTIRKIIVFASLGIRNGC EDMYELDFNHFSILRKGDPYVSPKNPGEHVLYENPGVQRKVFYPNRQNPTLCPVQILE EEKTMRPSDPCCPSCLFLCIKYGGRTRNLPQNEYVRQRMGRNKLKSFGPVMCRMAMLV HIRSGSFFFKALGITLLFMAGFPDDLVQRETKYRNLDLLQKYYRTDEDAEDEELFLSH PIAFDTARPSSQQLTGKTTSTKSKGRRQTNSSSKSHNFPKASVQESAPSSSTPGTQFG LMGYTSIQTQAMAAFQSTQSQTPAETTQVSNPMMKSLGNNVSYHNQTAYHLFPPQPAN TFMPMVYWPPPVVFPPSPYPTSYGYRSYPTNANNISIHPQPYYNHPSSSSFIPKIIER NRTDVSASLEPDSDSDSSLSSSEEPKEALASCR" gene complement(26264259..26266610) /locus_tag="TCM_030222" /note="dbxref CacaoGD:Thecc1EG030222" mRNA complement(join(26264259..26265395,26265504..26265669, 26266008..26266196,26266305..26266610)) /locus_tag="TCM_030222" /product="Peroxidase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022117t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s01510.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09095t00001" CDS complement(join(26264986..26265395,26265504..26265669, 26266008..26266196,26266305..26266529)) /locus_tag="TCM_030222" /note="paralog of Thecc1EG022117t1" /codon_start=1 /product="Peroxidase superfamily protein" /protein_id="EOY28693.1" /db_xref="Phytozome:POPTR_0004s01510.1" /db_xref="TAIR:AT4G21960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SB81" /translation="MGAAKVLFFFALLCFSAVSTFAENEEDPGLVMSFYKDTCPQAEE IIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRRTLSEKETDRSFGLR NFRYIETIKEAVERECPGVVSCADILVLSARDGIVSLGGPYIPLKTGRRDGRRSRADV VEEYLPDHNETISAVLDRFSAMGIDTPGVVALLGAHSVGRTHCVKLVHRLYPDVDPAL NPDHVPHMLHKCPDQIPDPKAVQYVRNDRGTPMILDNNYYRNILDNKGLLIVDHQLAY DKRTKPYVKKMAKSQDYFFKEFARAITILSENNPLTGTKGEIRKQCNVANKLH" mobile_element 26266790..26266853 /note="source:CACAO_M_E12463_F12_scaffold_3 4580 4642" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26268631..26274670) /locus_tag="TCM_030223" /note="dbxref CacaoGD:Thecc1EG030223" mRNA complement(join(26268631..26269110,26269358..26269464, 26269541..26269617,26270045..26270180,26270598..26270833, 26271321..26271450,26271611..26272771,26273015..26273463, 26273596..26274670)) /locus_tag="TCM_030223" /product="Met-10+ like family protein / kelch repeat-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012726001" /inference="similar to AA sequence:Phytozome:GSVIVT01012726001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc393t3" mRNA complement(join(26268907..26269110,26269358..26269464, 26269578..26269617,26270045..26270180,26270598..26270833, 26271321..26271450,26271611..26272771,26273015..26273463, 26273592..26274359)) /locus_tag="TCM_030223" /product="Met-10+ like family protein / kelch repeat-containing protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012726001" /inference="similar to AA sequence:Phytozome:GSVIVT01012726001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc393t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc393t3" mRNA complement(join(26268907..26269110,26269358..26269464, 26269555..26269617,26270045..26270180,26270598..26270833, 26271321..26271450,26271611..26272771,26273015..26273463, 26273592..26274359)) /locus_tag="TCM_030223" /product="Met-10+ like family protein / kelch repeat-containing protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012726001" /inference="similar to AA sequence:Phytozome:GSVIVT01012726001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc393t2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc393t3" mRNA complement(join(26268907..26269110,26269358..26269464, 26269541..26269617,26270045..26270180,26270598..26270833, 26271321..26271450,26271611..26272771,26273015..26273463, 26273592..26274359)) /locus_tag="TCM_030223" /product="Met-10+ like family protein / kelch repeat-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012726001" /inference="similar to AA sequence:Phytozome:GSVIVT01012726001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc393t10; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc393t3" mRNA complement(join(26268907..26269110,26269358..26269617, 26270045..26270180,26270598..26270833,26271321..26271450, 26271611..26272771,26273015..26273463,26273592..26274359)) /locus_tag="TCM_030223" /product="Met-10+ like family protein / kelch repeat-containing protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012726001" /inference="similar to AA sequence:Phytozome:GSVIVT01012726001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc393t7; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc393t3" CDS complement(join(26268983..26269110,26269358..26269464, 26269541..26269617,26270045..26270180,26270598..26270833, 26271321..26271450,26271611..26272771,26273015..26273463, 26273596..26274318)) /locus_tag="TCM_030223" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Met-10+ like family protein / kelch repeat-containing protein, putative isoform 1" /protein_id="EOY28694.1" /db_xref="Phytozome:GSVIVT01012726001" /db_xref="TAIR:AT4G04670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1B1" /translation="MEFDKRKASTLASLSSNETDKSPKGTLDTPIIPLLDAINNHPSY FTTSSCSGRISILSQPKPDPNSNNPTKKKARGGTWLFITHDMADPDSVISLLFADSTK LTQLSELVFRFEPLIIAVECRDLNSAQNLVSLAIACGFRESGITSVSKRVIVGIRCSI RMEVPLGDTQKIMVSKDYVRFLVEVANEKMEANRQRSEGFLRAFMKDQAGAFENGNGS ICGESGDCNEGQDGLQRNFGDAQDIDPNETTPFSCQSLAGTDGIRSFSLSITKMVIVG EPVERLFLWGHSACTVDNIDKTMVLVFGGFGGIGRHARRNDSFLLDPLLGNLKEINVV GCPSPRLGHTSSLVGDCMFVIGGRADPLNILSDVWVLNTVKNEWRLLDCTGRAFPPRH RHAAAVVGSKIYVFGGLNNDTISSSLHVLDTNTLQWEELVVHGEWPCARHSHSMVTYG SKLFMFGGYHGEKALGDLYSFDTQTCLWKVEKVGGRSPHARFSHSMFVYKNYIGIIGG CPVRQHCQELALLDIRSLVWKHVTLNSIDKELFVRCTANVVHDNLVMVGGGAACYAFG TKFSEPVKIELLPLLSLDDHENAPKMGENQVNNQEEGMTANGNDLIQASHVGNALGST QSPKPQSLNVGNQMVASSWVVQLERKYAKLGKDILKKFGWLDLERKAYALDDGLRISF PVTEKFCAIFPEDKFEGLIDHHPSKTFRAESVLLNEVSSSAALDILKKCGATKLPDEV IEARKASKSPLKIMTEAVASLIRHKGLSVKLLEQLPSRWERVGDIVVLPVSSFKDPVW DSIGEELWPIIARSLNTCRLARQGRVAPNGTRDSTLEILMGDSGWVDHRENGILYSFD ATKCMFSWGNLSEKMRMANLDCTDAVIVDLFAGIGYFVLPFLVRAKAKLVYACEWNPH AIEALKRNLQANSVSDRCIILEGDNRITAPKGVADRVCLGLLPSSEASWLIAVRALRS EGGILHVHGNVKDTNEESWTKHVSKSISEIARSEGHCWEVIVEHVERVKWYAPHIRHL VADVRCRQIQPENFHVTK" CDS complement(join(26268983..26269110,26269358..26269464, 26269541..26269617,26270045..26270180,26270598..26270833, 26271321..26271450,26271611..26272771,26273015..26273463, 26273592..26273678)) /locus_tag="TCM_030223" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Met-10+ like family protein / kelch repeat-containing protein, putative isoform 2" /protein_id="EOY28695.1" /db_xref="Phytozome:GSVIVT01012726001" /db_xref="TAIR:AT4G04670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1B1" /translation="MGMAQSVVRVVIVMKVRMVCREILEMPKLDIDPNETTPFSCQSL AGTDGIRSFSLSITKMVIVGEPVERLFLWGHSACTVDNIDKTMVLVFGGFGGIGRHAR RNDSFLLDPLLGNLKEINVVGCPSPRLGHTSSLVGDCMFVIGGRADPLNILSDVWVLN TVKNEWRLLDCTGRAFPPRHRHAAAVVGSKIYVFGGLNNDTISSSLHVLDTNTLQWEE LVVHGEWPCARHSHSMVTYGSKLFMFGGYHGEKALGDLYSFDTQTCLWKVEKVGGRSP HARFSHSMFVYKNYIGIIGGCPVRQHCQELALLDIRSLVWKHVTLNSIDKELFVRCTA NVVHDNLVMVGGGAACYAFGTKFSEPVKIELLPLLSLDDHENAPKMGENQVNNQEEGM TANGNDLIQASHVGNALGSTQSPKPQSLNVGNQMVASSWVVQLERKYAKLGKDILKKF GWLDLERKAYALDDGLRISFPVTEKFCAIFPEDKFEGLIDHHPSKTFRAESVLLNEVS SSAALDILKKCGATKLPDEVIEARKASKSPLKIMTEAVASLIRHKGLSVKLLEQLPSR WERVGDIVVLPVSSFKDPVWDSIGEELWPIIARSLNTCRLARQGRVAPNGTRDSTLEI LMGDSGWVDHRENGILYSFDATKCMFSWGNLSEKMRMANLDCTDAVIVDLFAGIGYFV LPFLVRAKAKLVYACEWNPHAIEALKRNLQANSVSDRCIILEGDNRITAPKGVADRVC LGLLPSSEASWLIAVRALRSEGGILHVHGNVKDTNEESWTKHVSKSISEIARSEGHCW EVIVEHVERVKWYAPHIRHLVADVRCRQIQPENFHVTK" CDS complement(join(26269427..26269464,26269578..26269617, 26270045..26270180,26270598..26270833,26271321..26271450, 26271611..26272771,26273015..26273463,26273592..26273678)) /locus_tag="TCM_030223" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Met-10+ like family protein / kelch repeat-containing protein isoform 4" /protein_id="EOY28697.1" /db_xref="Phytozome:GSVIVT01012726001" /db_xref="TAIR:AT4G04670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1B1" /translation="MGMAQSVVRVVIVMKVRMVCREILEMPKLDIDPNETTPFSCQSL AGTDGIRSFSLSITKMVIVGEPVERLFLWGHSACTVDNIDKTMVLVFGGFGGIGRHAR RNDSFLLDPLLGNLKEINVVGCPSPRLGHTSSLVGDCMFVIGGRADPLNILSDVWVLN TVKNEWRLLDCTGRAFPPRHRHAAAVVGSKIYVFGGLNNDTISSSLHVLDTNTLQWEE LVVHGEWPCARHSHSMVTYGSKLFMFGGYHGEKALGDLYSFDTQTCLWKVEKVGGRSP HARFSHSMFVYKNYIGIIGGCPVRQHCQELALLDIRSLVWKHVTLNSIDKELFVRCTA NVVHDNLVMVGGGAACYAFGTKFSEPVKIELLPLLSLDDHENAPKMGENQVNNQEEGM TANGNDLIQASHVGNALGSTQSPKPQSLNVGNQMVASSWVVQLERKYAKLGKDILKKF GWLDLERKAYALDDGLRISFPVTEKFCAIFPEDKFEGLIDHHPSKTFRAESVLLNEVS SSAALDILKKCGATKLPDEVIEARKASKSPLKIMTEAVASLIRHKGLSVKLLEQLPSR WERVGDIVVLPVSSFKDPVWDSIGEELWPIIARSLNTCRLARQGRVAPNGTRDSTLEI LMGDSGWVDHRENGILYSFDATKCMFSWGNLSEKMRMANLDCTDAVIVDLFAGIGYFV LPFLVRAKAKLVYACEWNPHAIEALKRNLQANSVSDRCIILEGDNRITAPKGVADRVC LGLLPSRVRVEYYTCMGM" CDS complement(join(26269459..26269464,26269555..26269617, 26270045..26270180,26270598..26270833,26271321..26271450, 26271611..26272771,26273015..26273463,26273592..26273678)) /locus_tag="TCM_030223" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Met-10+ like family protein / kelch repeat-containing protein isoform 3" /protein_id="EOY28696.1" /db_xref="Phytozome:GSVIVT01012726001" /db_xref="TAIR:AT4G04670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1B1" /translation="MGMAQSVVRVVIVMKVRMVCREILEMPKLDIDPNETTPFSCQSL AGTDGIRSFSLSITKMVIVGEPVERLFLWGHSACTVDNIDKTMVLVFGGFGGIGRHAR RNDSFLLDPLLGNLKEINVVGCPSPRLGHTSSLVGDCMFVIGGRADPLNILSDVWVLN TVKNEWRLLDCTGRAFPPRHRHAAAVVGSKIYVFGGLNNDTISSSLHVLDTNTLQWEE LVVHGEWPCARHSHSMVTYGSKLFMFGGYHGEKALGDLYSFDTQTCLWKVEKVGGRSP HARFSHSMFVYKNYIGIIGGCPVRQHCQELALLDIRSLVWKHVTLNSIDKELFVRCTA NVVHDNLVMVGGGAACYAFGTKFSEPVKIELLPLLSLDDHENAPKMGENQVNNQEEGM TANGNDLIQASHVGNALGSTQSPKPQSLNVGNQMVASSWVVQLERKYAKLGKDILKKF GWLDLERKAYALDDGLRISFPVTEKFCAIFPEDKFEGLIDHHPSKTFRAESVLLNEVS SSAALDILKKCGATKLPDEVIEARKASKSPLKIMTEAVASLIRHKGLSVKLLEQLPSR WERVGDIVVLPVSSFKDPVWDSIGEELWPIIARSLNTCRLARQGRVAPNGTRDSTLEI LMGDSGWVDHRENGILYSFDATKCMFSWGNLSEKMRMANLDCTDAVIVDLFAGIGYFV LPFLVRAKAKLVYACEWNPHAIEALKRNLQANSVSDRCIILEGDNRITAPKGVADRVC LGLLPSSEASWLIAE" CDS complement(join(26269459..26269617,26270045..26270180, 26270598..26270833,26271321..26271450,26271611..26272771, 26273015..26273463,26273592..26273678)) /locus_tag="TCM_030223" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Met-10+ like family protein / kelch repeat-containing protein isoform 5" /protein_id="EOY28698.1" /db_xref="Phytozome:GSVIVT01012726001" /db_xref="TAIR:AT4G04670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1B1" /translation="MGMAQSVVRVVIVMKVRMVCREILEMPKLDIDPNETTPFSCQSL AGTDGIRSFSLSITKMVIVGEPVERLFLWGHSACTVDNIDKTMVLVFGGFGGIGRHAR RNDSFLLDPLLGNLKEINVVGCPSPRLGHTSSLVGDCMFVIGGRADPLNILSDVWVLN TVKNEWRLLDCTGRAFPPRHRHAAAVVGSKIYVFGGLNNDTISSSLHVLDTNTLQWEE LVVHGEWPCARHSHSMVTYGSKLFMFGGYHGEKALGDLYSFDTQTCLWKVEKVGGRSP HARFSHSMFVYKNYIGIIGGCPVRQHCQELALLDIRSLVWKHVTLNSIDKELFVRCTA NVVHDNLVMVGGGAACYAFGTKFSEPVKIELLPLLSLDDHENAPKMGENQVNNQEEGM TANGNDLIQASHVGNALGSTQSPKPQSLNVGNQMVASSWVVQLERKYAKLGKDILKKF GWLDLERKAYALDDGLRISFPVTEKFCAIFPEDKFEGLIDHHPSKTFRAESVLLNEVS SSAALDILKKCGATKLPDEVIEARKASKSPLKIMTEAVASLIRHKGLSVKLLEQLPSR WERVGDIVVLPVSSFKDPVWDSIGEELWPIIARSLNTCRLARQGRVAPNGTRDSTLEI LMGDSGWVDHRENGILYSFDATKCMFSWGNLSEKMRMANLDCTDAVIVDLFAGIGYFV LPFLVRAKAKLVYACEWNPHAIEALKRNLQANSVSDRCIILEGDNRITAPKGVADRVC LGLLPSSEASWLIAVRALRCFMLMLLLVLHFKCTVILMMVQKMQE" gene complement(26275089..26276383) /locus_tag="TCM_030224" /note="dbxref CacaoGD:Thecc1EG030224" mRNA complement(join(26275089..26275231,26276080..26276167, 26276273..26276383)) /locus_tag="TCM_030224" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012725001" /inference="similar to AA sequence:Phytozome:GSVIVT01030609001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g16255t00001" CDS complement(join(26275129..26275231,26276080..26276167, 26276273..26276327)) /locus_tag="TCM_030224" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28699.1" /db_xref="Phytozome:GSVIVT01030609001" /translation="MGDLDRSSSGRGRRQDTKEERTDQDTKVEFSEDEEMLIARMFNL IGDRWSLIAGRIPGRTADEIEKYWTSRRSSQSTHNQR" mobile_element complement(26275274..26276038) /note="source:CACAO_Again_on_S_E38_scaffold_1 1 788" /mobile_element_type="transposon:TIR/hAT" gene 26283760..26291610 /locus_tag="TCM_030225" /note="dbxref CacaoGD:Thecc1EG030225" mRNA join(26283760..26283972,26284455..26286151, 26286250..26286610,26286767..26286851,26286949..26287005, 26287257..26287316,26287404..26287622,26288098..26289639, 26290269..26291610) /locus_tag="TCM_030225" /product="Homeodomain-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0021s00740.1" /inference="similar to AA sequence:ricco:29842.m003591" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8600t1" mRNA join(26283809..26283972,26284455..26286151, 26286250..26286610,26286767..26286851,26286949..26287005, 26287257..26287316,26287404..26287623,26288282..26289639, 26290269..26291328) /locus_tag="TCM_030225" /product="Homeodomain-like superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0021s00740.1" /inference="similar to AA sequence:ricco:29842.m003591" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc643t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8600t1" mRNA join(26283809..26283972,26284455..26286151, 26286250..26286610,26286767..26286851,26286949..26287005, 26287257..26287316,26287404..26287623,26288282..26289102, 26289187..26289639,26290269..26291328) /locus_tag="TCM_030225" /product="Homeodomain-like superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0021s00740.1" /inference="similar to AA sequence:ricco:29842.m003591" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc643t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8600t1" CDS join(26284573..26286151,26286250..26286610, 26286767..26286851,26286949..26287005,26287257..26287316, 26287404..26287623,26288282..26289639,26290269..26290757) /locus_tag="TCM_030225" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29842.m003591" /codon_start=1 /product="Homeodomain-like superfamily protein, putative isoform 3" /protein_id="EOY28702.1" /db_xref="TAIR:AT1G64570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXL0" /translation="MSLCENVQSTEVGSRGHQTAPPVASDGRSKPDDDVEWEAEEEVE DEEDEEEDVDFNPFLKETPSPEASSSLSSEIEGLDGDIVDSRAHTHVTKDVNPSKINA KVQNSDVGDSEHGEEETVMQSTASPELQNTIPLKHDKRKTGSSSQSEREKESQSSTVK DSMVGDLSNATHSQKPVIHLDDAEDDAVCRRTRARYSLASFTLDELEAFLQETDDEDD VQNVDDEEEYRKFLAAVLQGGDGDHQSTQGNENVDDEDEDNDADFEIELEEALESDYD EAALEKTQAEEYQRAGRRPETRQNRRQKASAQYERKLLEQTKRPLRPLLPILPNGPIA PIPTLNGKTCMPETYRSCLPSAAVDGCINGFTPYQIGQLHCLIHEHVQLLIQIFSLCV LDPSRQHIASQLHRLIFEMLHKRDEGVACKSKLYPDTCFKPPYVSSSVPNEVPLLCPT QSTPKTSTFNANGVCFSPNTQMPDAQNIFSPSGRYEHVSSGQLRFSWVPSLNSPGLSI LDVAPLNLVGRYMDDVYSAVQEHRQRHLENSCATQYEKEPLFPLPCFPSEVEANNEAL RGSALPAGSTVPSSVCQPPPKKTLAATLVEKTKKQSVAVVPKDITKLAQRFFPLFNPV LFPHKPPPVAVANRVLFTDAEDELLALGIMEYNSDWKAIQQRYLPCKSKHQIFVRQKN RCSSKAPENPIKAVRRMKTSPLTAEELQGIQEGLKVYKLDWMSVWKFIVPHRDPSLLP RQWRIALGTQKSYKQDATKKEKRRLYESERRKRKAALTNWQHVSDKEAEEGTHVTEQS NNYVSAVIRPLTGHMQGSPHALNQSQHPYATSHHASNALQPTHPVPNMIWNASKSQIY LRPYRSRKSNNLRLVKLAPDLPPVNLPPSVRVISESALKTNQCGAYTKVSATGDGVVD AGIGNTVSPFSHSAKALANKRHKSNPTRANITSSLSEESGVVKNKSVAEERSTHTDLQ MHPLLFQAPEDGQVPYYPLNCGTGASSSFSFFSGNQPQLNLSLFYNPQQTNHSVESLT RSLKMKDSVSISCGIDFHPLLQRTDDTNSELVTECSTASLSVNLDGKSVAPCNPSNAV QMKSVAQCSPFATRSRPSSPNEKANELDLEIHLSSLSTKENAALSGDAATHHKNSAVS LLNSQNAAETRDTTHSSGNKFVSGARASTIPSKTTGRYMDDTSDQSHLEIVMEQEELS DSDEEFEEHVEFECEEMADSEGEGSGCEQVSEMQDKEAEGSTTRKTVTDEDFNNQQQE LSTRCNSQGNICVPEKGTPPFLKLGLTCPRKDASSSWLSLDSSASGRTSRSKPKNEVS TISKGPPTKTLASYRLNRPLKHATPSTRKVTVQEHAIDMAEQLSLGPLSVPTLRKPRK RRANTIANTGSSLGNPKNDAKDSG" CDS join(26284573..26286151,26286250..26286610, 26286767..26286851,26286949..26287005,26287257..26287316, 26287404..26287623,26288282..26289102,26289187..26289639, 26290269..26290757) /locus_tag="TCM_030225" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003591" /codon_start=1 /product="Homeodomain-like superfamily protein, putative isoform 2" /protein_id="EOY28701.1" /db_xref="TAIR:AT1G64570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXL0" /translation="MSLCENVQSTEVGSRGHQTAPPVASDGRSKPDDDVEWEAEEEVE DEEDEEEDVDFNPFLKETPSPEASSSLSSEIEGLDGDIVDSRAHTHVTKDVNPSKINA KVQNSDVGDSEHGEEETVMQSTASPELQNTIPLKHDKRKTGSSSQSEREKESQSSTVK DSMVGDLSNATHSQKPVIHLDDAEDDAVCRRTRARYSLASFTLDELEAFLQETDDEDD VQNVDDEEEYRKFLAAVLQGGDGDHQSTQGNENVDDEDEDNDADFEIELEEALESDYD EAALEKTQAEEYQRAGRRPETRQNRRQKASAQYERKLLEQTKRPLRPLLPILPNGPIA PIPTLNGKTCMPETYRSCLPSAAVDGCINGFTPYQIGQLHCLIHEHVQLLIQIFSLCV LDPSRQHIASQLHRLIFEMLHKRDEGVACKSKLYPDTCFKPPYVSSSVPNEVPLLCPT QSTPKTSTFNANGVCFSPNTQMPDAQNIFSPSGRYEHVSSGQLRFSWVPSLNSPGLSI LDVAPLNLVGRYMDDVYSAVQEHRQRHLENSCATQYEKEPLFPLPCFPSEVEANNEAL RGSALPAGSTVPSSVCQPPPKKTLAATLVEKTKKQSVAVVPKDITKLAQRFFPLFNPV LFPHKPPPVAVANRVLFTDAEDELLALGIMEYNSDWKAIQQRYLPCKSKHQIFVRQKN RCSSKAPENPIKAVRRMKTSPLTAEELQGIQEGLKVYKLDWMSVWKFIVPHRDPSLLP RQWRIALGTQKSYKQDATKKEKRRLYESERRKRKAALTNWQHVSDKEAEEGTHVTEQS NNYVSAVIRPLTGHMQGSPHALNQSQHPYATSHHASNALQPTHPVPNMIWNASKSQIY LRPYRSRKSNNLRLVKLAPDLPPVNLPPSVRVISESALKTNQCGAYTKVSATGDGVVD AGIGNTVSPFSHSAKALANKRHKSNPTRANITSSLSEESGVVKNKSVAEERSTHTDLQ MHPLLFQAPEDGQVPYYPLNCGTGASSSFSFFSGNQPQLNLSLFYNPQQTNHSVESLT RSLKMKDSVSISCGIDFHPLLQRTDDTNSELMKSVAQCSPFATRSRPSSPNEKANELD LEIHLSSLSTKENAALSGDAATHHKNSAVSLLNSQNAAETRDTTHSSGNKFVSGARAS TIPSKTTGRYMDDTSDQSHLEIVMEQEELSDSDEEFEEHVEFECEEMADSEGEGSGCE QVSEMQDKEAEGSTTRKTVTDEDFNNQQQELSTRCNSQGNICVPEKGTPPFLKLGLTC PRKDASSSWLSLDSSASGRTSRSKPKNEVSTISKGPPTKTLASYRLNRPLKHATPSTR KVTVQEHAIDMAEQLSLGPLSVPTLRKPRKRRANTIANTGSSLGNPKNDAKDSG" CDS join(26284573..26286151,26286250..26286610, 26286767..26286851,26286949..26287005,26287257..26287316, 26287404..26287622,26288098..26289639,26290269..26290757) /locus_tag="TCM_030225" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003591" /codon_start=1 /product="Homeodomain-like superfamily protein, putative isoform 1" /protein_id="EOY28700.1" /db_xref="TAIR:AT1G64570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXL0" /translation="MSLCENVQSTEVGSRGHQTAPPVASDGRSKPDDDVEWEAEEEVE DEEDEEEDVDFNPFLKETPSPEASSSLSSEIEGLDGDIVDSRAHTHVTKDVNPSKINA KVQNSDVGDSEHGEEETVMQSTASPELQNTIPLKHDKRKTGSSSQSEREKESQSSTVK DSMVGDLSNATHSQKPVIHLDDAEDDAVCRRTRARYSLASFTLDELEAFLQETDDEDD VQNVDDEEEYRKFLAAVLQGGDGDHQSTQGNENVDDEDEDNDADFEIELEEALESDYD EAALEKTQAEEYQRAGRRPETRQNRRQKASAQYERKLLEQTKRPLRPLLPILPNGPIA PIPTLNGKTCMPETYRSCLPSAAVDGCINGFTPYQIGQLHCLIHEHVQLLIQIFSLCV LDPSRQHIASQLHRLIFEMLHKRDEGVACKSKLYPDTCFKPPYVSSSVPNEVPLLCPT QSTPKTSTFNANGVCFSPNTQMPDAQNIFSPSGRYEHVSSGQLRFSWVPSLNSPGLSI LDVAPLNLVGRYMDDVYSAVQEHRQRHLENSCATQYEKEPLFPLPCFPSEVEANNEAL RGSALPAGSTVPSSVCQPPPKKTLAATLVEKTKKQSVAVVPKDITKLAQRFFPLFNPV LFPHKPPPVAVANRVLFTDAEDELLALGIMEYNSDWKAIQQRYLPCKSKHQIFVRQKN RCSSKAPENPIKAVRRMKTSPLTAEELQGIQEGLKVYKLDWMSVWKFIVPHRDPSLLP RQWRIALGTQKSYKQDATKKEKRRLYESERRKRKAALTNWQHVSDKEDCQAEYTGGEN CSGDDDIDNVDESYVHEGFLADWRPGTSKLISSERPCLNIRNKNLPGDMSTEEGTHVT EQSNNYVSAVIRPLTGHMQGSPHALNQSQHPYATSHHASNALQPTHPVPNMIWNASKS QIYLRPYRSRKSNNLRLVKLAPDLPPVNLPPSVRVISESALKTNQCGAYTKVSATGDG VVDAGIGNTVSPFSHSAKALANKRHKSNPTRANITSSLSEESGVVKNKSVAEERSTHT DLQMHPLLFQAPEDGQVPYYPLNCGTGASSSFSFFSGNQPQLNLSLFYNPQQTNHSVE SLTRSLKMKDSVSISCGIDFHPLLQRTDDTNSELVTECSTASLSVNLDGKSVAPCNPS NAVQMKSVAQCSPFATRSRPSSPNEKANELDLEIHLSSLSTKENAALSGDAATHHKNS AVSLLNSQNAAETRDTTHSSGNKFVSGARASTIPSKTTGRYMDDTSDQSHLEIVMEQE ELSDSDEEFEEHVEFECEEMADSEGEGSGCEQVSEMQDKEAEGSTTRKTVTDEDFNNQ QQELSTRCNSQGNICVPEKGTPPFLKLGLTCPRKDASSSWLSLDSSASGRTSRSKPKN EVSTISKGPPTKTLASYRLNRPLKHATPSTRKVTVQEHAIDMAEQLSLGPLSVPTLRK PRKRRANTIANTGSSLGNPKNDAKDSG" gene 26291331..26296150 /locus_tag="TCM_030226" /note="dbxref CacaoGD:Thecc1EG030226" mRNA join(26291331..26291608,26291706..26291935, 26292018..26292149,26292232..26292276,26292406..26292575, 26292693..26292781,26293157..26293264,26293724..26293980, 26294480..26294611,26294698..26294742,26294933..26295102, 26295259..26295344,26295621..26295728,26295821..26296150) /locus_tag="TCM_030226" /product="TRNAHis guanylyltransferase" /inference="alignment:exonerate-protein:2:frave:gene23761" /inference="similar to AA sequence:Phytozome:GSVIVT01022253001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1060t7" CDS join(26291832..26291935,26292018..26292149, 26292232..26292276,26292406..26292575,26292693..26292781, 26293157..26293264,26293724..26293980,26294480..26294611, 26294698..26294742,26294933..26295102,26295259..26295344, 26295621..26295728,26295821..26295946) /locus_tag="TCM_030226" /codon_start=1 /product="TRNAHis guanylyltransferase" /protein_id="EOY28703.1" /db_xref="Phytozome:GSVIVT01022253001" /db_xref="TAIR:AT2G32320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IRQ5" /translation="MANSKYEYVKSFEVEDEVMPPNLIVVRIDGRDFRRFSQVHEFEK PNDKKALDLMNQCAMAVIEEYPDVVFSYGYSDEYSFVLKKTSKFYQRRSSKISSVMVS IFSSVYVTKWKEFFPCKELRYPPSFRSRIVCCASIEVLQAYLAWRQKDCHVQNQYNTC FWELVTKGGKTEMEAQEILKDAKEQDRNELLFQQFGINYNECLALFRQGTCIFKMQVE DVVKYIKDGTPVKRLRRKASDFRSENIAGRSFWNEHASLLKELGGFSEDCVKINPDYI RSFLFESKLMPSTWIVIRIDGCHFHRFSDVHEFNKPNDKQALDLMNLCAVAVLEEFQD IIFSYGVSDEYSFVLKKNSQLYQRRASEIVSAIVSFFSSMYVMKWKDVFPMKELKYPP SFDGRAVCYPSAEILRDYLAWRQVDCHINNQYNTCFWSLVKSGKCKSEAQSCLKGTQA REKNELLLKEFGIDYNTLPLMFRQGSSVFRVKTEKTSILENSTSVGKAQTKIVTEYCN IIEQSFWEANPSILD" mobile_element 26297751..26299143 /note="source:CACAO_M_E870_F22_scaffold_1 1377 2738" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26298602..26298795) /note="source:scaffold_5_CACTA_0612 9175 11000" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26298796..26300389) /note="source:CACAO_Mariner_E180_scaffold_6 6705 8289" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(26300386..26300658) /note="source:CACAO_M_E65323_F12_scaffold_9 7735 7996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26300667..26301732 /note="source:INTACT253_F39_scaffold_1-int 2523 3590" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(26302460..26303037) /note="source:CACAO_M_E49282_F119_scaffold_6 104 672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26303063..26303172 /note="source:scaffold_4_CACTA_0502 2609 2728" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26303442..26303506) /note="source:CACAO_PIF_E119_scaffold_3 2429 2493" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 26303954..26309053 /locus_tag="TCM_030228" /note="dbxref CacaoGD:Thecc1EG030228" mRNA join(26303954..26304465,26305040..26305314, 26305883..26305936,26306118..26309053) /locus_tag="TCM_030228" /product="Pentatricopeptide repeat superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29842.m003590" /inference="similar to AA sequence:ricco:29842.m003590" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8565t1" CDS join(26305145..26305314,26305883..26305936, 26306118..26308062) /locus_tag="TCM_030228" /note="dbxref ricco:29842.m003590" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative" /protein_id="EOY28704.1" /db_xref="TAIR:AT1G11710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ40" /translation="MQFVVIDATYPHYYMDNVLSNPFPTERSPHISLKTEPWIHRRRP DKLEGQLHLICKLRHFSKTLFLFLGGGSFKRRTSLFSRGLHVGKQFSCPSSEDIVFRA ICVNLRHRRWKFLEQVSPSLTDALVSRVVREFQNSPQLALEFHNWVGEKKGFPHSLAS CCALIHVLVKSRRFDDAITLLENLMHVNGMTPLEVLDGLEDSYELCDSFPAVFDTLVR ACTQCGATEGAYAVVKKLRMKGRFVTIHAWNNFFSHLLKLNEIGRFWNVYNEMVSYRY IENVNTFNLVIYALCKECRILEAISAFYRMLKSGIWPNVVTFNMIINGACRMGDIELA LKLVRKMGVMSGNSVSLNLVTYNSIVNGFCKIGKFSFVEEVCNDMVKAGFEPDVRTYG TLIDGHARKGCLEEALRLCDEMAERGLMPNTVVYNSILHWFYMEGDLEGASSVLADMI DKNVCPDNVTYSTIIEGLCRHGYVVQAFNFHRQVLEMNLIEDTFSHNILINCLCKSNN LAGAMQLVGSMFIHGLIPDLVTYGALIDRYCKEGQIESAVQIYDEMARLEEGPNMVIY NSILNGLCKEMSVDVARQMVDSLQSMGLSDGITYNTLINGYCGCGNIDEAFALFLEMR KVGGLVNRVTYNTLINFLCKFGCIQQAKELMKRMLLHGLVPDVITYTMLITCSAKNCS PDEVIELHDYMVLKGVIPDRQTYQAIVSPLLAEENEENRV" gene 26309110..26310844 /locus_tag="TCM_030229" /note="dbxref CacaoGD:Thecc1EG030229" mRNA 26309110..26310844 /locus_tag="TCM_030229" /product="ATPase, F1 complex, gamma subunit protein" /inference="alignment:exonerate- protein:2:ricco:29842.m003589" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030867t1" /inference="similar to AA sequence:Phytozome:Glyma15g11490.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8567t1" CDS 26309449..26310576 /locus_tag="TCM_030229" /note="paralog of Thecc1EG030867t1" /codon_start=1 /product="ATPase, F1 complex, gamma subunit protein" /protein_id="EOY28705.1" /db_xref="Phytozome:Glyma15g11490.2" /db_xref="TAIR:AT4G04640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9FXH0" /translation="MSCSNLTMWVSSKPSLSDTSSLSFRSFISPFQLPSQSSAPNPSR SSSATQIHCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSESLVE VLYNINEQLQTEDIDVPLTKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAESRIAELK ELGLDYTVISVGKKGNTYFLRRPYIPVDRFLEGTSLPTAKEAQAIADDVFSLFVSEEV DKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDINGVCVDAAEDEFFRLTTKEGKLT VERDVVRTETADFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAM SNATDNAVELRRTLSIVYNRERQAKITGEILEIVAGANALV" mobile_element 26311898..26311971 /note="source:INTACT179_F163_scaffold_9-int 1387 1466" /mobile_element_type="retrotransposon:LTR/Copia" gene 26312581..26323125 /locus_tag="TCM_030230" /note="dbxref CacaoGD:Thecc1EG030230" mRNA join(26312581..26312908,26313290..26313603, 26314058..26314124,26314212..26315549,26316004..26316218, 26316462..26316732,26317304..26317479,26317898..26318005, 26318484..26318593,26318693..26318798,26319056..26319226, 26319957..26320085,26320552..26320734,26321063..26321194, 26321322..26321433,26321727..26321850,26322067..26323125) /locus_tag="TCM_030230" /product="Soluble starch synthase 3, chloroplastic/amyloplastic isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003588" /inference="similar to AA sequence:ricco:29842.m003588" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8598t1" mRNA join(26312581..26313603,26314058..26314124, 26314212..26315549,26316004..26316218,26316462..26316732, 26317304..26317479,26317898..26318005,26318484..26318593, 26318693..26318798,26319056..26320149) /locus_tag="TCM_030230" /product="Soluble starch synthase 3 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29842.m003588" /inference="similar to AA sequence:ricco:29842.m003588" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:PASA:2:TSA:puevd3b029237t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8598t1" CDS join(26313484..26313603,26314058..26314124, 26314212..26315549,26316004..26316218,26316462..26316732, 26317304..26317479,26317898..26318005,26318484..26318593, 26318693..26318798,26319056..26319226,26319957..26320085, 26320552..26320734,26321063..26321194,26321322..26321433, 26321727..26321850,26322067..26322199) /locus_tag="TCM_030230" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003588" /codon_start=1 /product="Soluble starch synthase 3, chloroplastic/amyloplastic isoform 1" /protein_id="EOY28706.1" /db_xref="TAIR:AT1G11720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q43846" /translation="MEVSLQGQRPLSYKDVFNHTNVRFKIKPFLGSFPFARTTLFTPW RSEYPASKLSHRVTSSAADFSKRRQRRLSTPSSKGPAPKGFTPKTQVGTSTQKRDLKS NGEKEDSSIPTSSESAVLDKTEIESNIALEEESTIELYQKNRVDEAETEEPKEDIPSM GKELSVGKSNQNVENGRSIGKILEDVAELQKNETTLKSDTVSTARDVSSEGKHLDGTK TDETVSIKDESVESDEKTIEDTLKLKLEMEANLRKQEIEGLAEENFSRGNKVFVYPQS IKPDEDIEVFLNRSFSTLANESDILIMGAFNDWRWRSFTVRLKKTHLNGDWWSCQIHV PKEAYKMDFVFFNGQNFYDNNDTKDFCIPVEGGMDVFSFEDFLLEEKRRELEKLAKER AEKERQEEEKKRIEAEKAASEADRAQARVETERRREFLQQLMKKAASSVDNIWFIEPK EFKGGDKVKLHYNKSSGPLAHANELWIHGGHNNWNDGLTIIEKLVRSERESGDWRYAE VVIPDRALVLDWVFADGPPKSATMYDNNNYEDFHAIVPKSIPEELYWVEEEHRMFRKL QEERKLREELIRAKAEKTARMKAEMKERTLKRFLLSQKHIVYTEPLDVHAGSIVTVFY NPANTVLNGKPEVWFRCSFNRWTHRMGPLPPQRMLPVDNGSHVKATVKVPLDAYMMDF VFSEREDGGIFDNKGGMDYHIPVFGGIVNEPPMHIVHIAVEMAPIAKVGGLGDVVTSL SRAVQDLNHNVDIIFPKYDCLNFSHVKDLHYQRSYSWGGTEIKVWLGKVEGLSVYFLE PQNGFFCTGCVYGSRNDAERFGFFCHAALEFLHQGGFHPDIIHCHDWSSAPVAWLFKD HYMHYSLGKNRVVFTIHNLEFGAHFIAKAMAYADKATTVSHTYSREVAGNPAVAPHLH KFHGILNGIDLDIWDPYNDKFIPICYTSENVVEGKRAAKEALQQRLGLKKADVPLVGI ITRLTHQKGIHLIKHAIWHTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHGDRAR LCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDV DHDKDRADSQGLEPNGFNFDGADSGGVDYALNRAISAWYDGREWFYSLCKRVMEQDWS WNRPALDYMELYHAATKN" CDS join(26313484..26313603,26314058..26314124, 26314212..26315549,26316004..26316218,26316462..26316732, 26317304..26317479,26317898..26318005,26318484..26318593, 26318693..26318798,26319056..26319238) /locus_tag="TCM_030230" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003588" /codon_start=1 /product="Soluble starch synthase 3 isoform 2" /protein_id="EOY28707.1" /db_xref="TAIR:AT1G11720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q43846" /translation="MEVSLQGQRPLSYKDVFNHTNVRFKIKPFLGSFPFARTTLFTPW RSEYPASKLSHRVTSSAADFSKRRQRRLSTPSSKGPAPKGFTPKTQVGTSTQKRDLKS NGEKEDSSIPTSSESAVLDKTEIESNIALEEESTIELYQKNRVDEAETEEPKEDIPSM GKELSVGKSNQNVENGRSIGKILEDVAELQKNETTLKSDTVSTARDVSSEGKHLDGTK TDETVSIKDESVESDEKTIEDTLKLKLEMEANLRKQEIEGLAEENFSRGNKVFVYPQS IKPDEDIEVFLNRSFSTLANESDILIMGAFNDWRWRSFTVRLKKTHLNGDWWSCQIHV PKEAYKMDFVFFNGQNFYDNNDTKDFCIPVEGGMDVFSFEDFLLEEKRRELEKLAKER AEKERQEEEKKRIEAEKAASEADRAQARVETERRREFLQQLMKKAASSVDNIWFIEPK EFKGGDKVKLHYNKSSGPLAHANELWIHGGHNNWNDGLTIIEKLVRSERESGDWRYAE VVIPDRALVLDWVFADGPPKSATMYDNNNYEDFHAIVPKSIPEELYWVEEEHRMFRKL QEERKLREELIRAKAEKTARMKAEMKERTLKRFLLSQKHIVYTEPLDVHAGSIVTVFY NPANTVLNGKPEVWFRCSFNRWTHRMGPLPPQRMLPVDNGSHVKATVKVPLDAYMMDF VFSEREDGGIFDNKGGMDYHIPVFGGIVNEPPMHIVHIAVEMAPIAKVGGLGDVVTSL SRAVQDLNHNVDIIFPKYDCLNFSHVKDLHYQRSYSWGGTEIKVWLGKVEGLSVYFLE PQNGFFCTGCVYGSRNDAERFGFFCHAALEFLHQGGFHPDIIHCHDWSSAPVAWLFKD HYMHYSLGKNRVVFTIHNLEFGAHFIAKAMAYADKATTVCS" gene complement(26322788..26323759) /locus_tag="TCM_030231" /note="dbxref CacaoGD:Thecc1EG030231" mRNA complement(26322788..26323759) /locus_tag="TCM_030231" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(26323289..26323600) /locus_tag="TCM_030231" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28708.1" /translation="MNLVSRKIIKEVWQVIEKDGRKKDFQQQKSLGQVEQCSSRPCLA QTEEVGNTDMQQKPEQCGCWDSSPGLHGHNVEFLPLNYSHLFTSCLFNLYSDNFEVLV M" gene 26324051..26327129 /locus_tag="TCM_030232" /note="dbxref CacaoGD:Thecc1EG030232" mRNA join(26324051..26324588,26324774..26324959, 26325215..26325737,26325992..26327129) /locus_tag="TCM_030232" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01037661001" /inference="similar to AA sequence:ricco:29842.m003587" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08626t00001" CDS join(26325222..26325737,26325992..26326141) /locus_tag="TCM_030232" /note="dbxref ricco:29842.m003587" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28709.1" /db_xref="TAIR:AT4G04630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXK6" /translation="MADWHGIMSNNTGGCSRRSMRDEDFDEEEVWSCVKEKEDSSSTP RKPRESSSSSSAWRLPSAPRMIRRVGNSASNENKVAQQSSAPVNIPDWSEIYGKHANM ESSRNGSWVDNGGGMVYGDGDYGGCGEDYEDDDMVPPHEWLARKLARSQISSFSVCEG MGRTLKGRDLSKDVMNLELENRVVKQVGAAFLFQEEKEKGKKQLAASEILSGSGVGFV FWV" gene 26328510..26333453 /locus_tag="TCM_030233" /note="dbxref CacaoGD:Thecc1EG030233" mRNA join(26328510..26328828,26329704..26329788, 26330038..26330099,26330170..26330405,26330516..26330579, 26330821..26330893,26331032..26331152,26331790..26331877, 26331967..26332092,26332289..26332398,26332791..26333453) /locus_tag="TCM_030233" /product="Galactosyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012721001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011362t1" /inference="similar to AA sequence:Phytozome:GSVIVT01037664001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05753t00001" mRNA join(26328549..26328828,26329704..26329788, 26330038..26330099,26330194..26330405,26330516..26330579, 26330821..26330893,26331032..26331152,26331790..26331877, 26331967..26332092,26332351..26332398,26332791..26332817) /locus_tag="TCM_030233" /product="Galactosyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012721001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011362t1" /inference="similar to AA sequence:Phytozome:GSVIVT01037664001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1138t1; inference alignment:Newbler:10:TSA:cgbaP2_g05753t00001" CDS join(26328719..26328828,26329704..26329788, 26330038..26330099,26330170..26330405,26330516..26330579, 26330821..26330893,26331032..26331152,26331790..26331877, 26331967..26332092,26332289..26332398,26332791..26332963) /locus_tag="TCM_030233" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011362t1" /codon_start=1 /product="Galactosyltransferase family protein isoform 1" /protein_id="EOY28710.1" /db_xref="Phytozome:GSVIVT01037664001" /db_xref="TAIR:AT1G05170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ46" /translation="MSVKSRGELAAKHVLSRNLALLLCFASFCAGMFFTNRMWMLPDG KGIPRTSRIGVEQSLNCDKKIKALNNEANSSGGSSGSQHSIHLLLYIECRTLDRAISD LEMKIVAARAERETIMKDPIISEDLKNVKSTLKRKYFMVIGINTAFSSRKRRDSVRST WMPQAEKRKKLEEEKGIIIRFVIGHSSTSGGILDKAIEAEEKVHGDFLRLQHIEGYLE LSAKTKTYFATAVSLWDAEFYVKVDDDVHVNLATLGSTLAGHSNKPRVYIGCMKSGPV LARKGVKYHEPEYWKFGEVGNKYFRHATGQLYAISKDLATYISINQNVLHKYANEDVS LGSWFIGLDVEHVDDRRLCCGTPPDCEWKAQAGNICVASFDWRCSGICRSVERIIEVH ERCGEDKNALWSTNFVQTTSSSF" CDS join(26328719..26328828,26329704..26329788, 26330038..26330099,26330194..26330405,26330516..26330579, 26330821..26330893,26331032..26331152,26331790..26331877, 26331967..26332092,26332351..26332366) /locus_tag="TCM_030233" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011362t1" /codon_start=1 /product="Galactosyltransferase family protein isoform 2" /protein_id="EOY28711.1" /db_xref="Phytozome:GSVIVT01037664001" /db_xref="TAIR:AT1G05170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ46" /translation="MSVKSRGELAAKHVLSRNLALLLCFASFCAGMFFTNRMWMLPDG KGIPRTSRIGVEQSLNCDKKIKALNNEANSSGGSSGSQHSIQTLDRAISDLEMKIVAA RAERETIMKDPIISEDLKNVKSTLKRKYFMVIGINTAFSSRKRRDSVRSTWMPQAEKR KKLEEEKGIIIRFVIGHSSTSGGILDKAIEAEEKVHGDFLRLQHIEGYLELSAKTKTY FATAVSLWDAEFYVKVDDDVHVNLATLGSTLAGHSNKPRVYIGCMKSGPVLARKGVKY HEPEYWKFGEVGNKYFRHATGQLYAISKDLATYISINQCGAC" gene complement(26333318..26335907) /locus_tag="TCM_030234" /note="dbxref CacaoGD:Thecc1EG030234" mRNA complement(join(26333318..26333867,26334000..26334061, 26335712..26335907)) /locus_tag="TCM_030234" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.44 coverage" CDS complement(join(26333617..26333867,26334000..26334057)) /locus_tag="TCM_030234" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28712.1" /translation="MIFGTYKRLWSAVRKHKATVQARKVSETVSYSEHKIRATGKTNM ARTRAYSMAESGKPEKHVIWHLWLTENILMRKVKDIINLKHKDACSGVNGGLPVGFLC " gene complement(26335145..26339805) /locus_tag="TCM_030235" /note="dbxref CacaoGD:Thecc1EG030235" mRNA complement(join(26335145..26335717,26337076..26337125, 26339131..26339805)) /locus_tag="TCM_030235" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage" CDS complement(join(26335680..26335717,26337076..26337125, 26339131..26339315)) /locus_tag="TCM_030235" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28713.1" /translation="MGQCHSAPSTGDDEIDQRGHCEETTTSSLKKRCLTMAKEQRSRF YILRRCVIMLLCWQKYGNKKNPKTMALAGEIGIQGEGMVALSSLVL" gene 26340717..26342699 /locus_tag="TCM_030236" /note="dbxref CacaoGD:Thecc1EG030236" mRNA join(26340717..26340875,26341000..26341067, 26341872..26341920,26342017..26342069,26342214..>26342332) /locus_tag="TCM_030236" /product="Ubiquitin-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb07g005440.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011359t1" /inference="similar to AA sequence:ricco:29842.m003584" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial3; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc319t10; inference alignment:Newbler:10:TSA:cgbaL_g07891t00001" mRNA join(26340784..26340875,26341000..26341063, 26341865..26341920,26342017..26342069,26342214..26342332, 26342427..26342699) /locus_tag="TCM_030236" /product="Ubiquitin-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb07g005440.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011359t1" /inference="similar to AA sequence:Phytozome:Sb07g005440.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07891t00001" CDS join(26341027..26341063,26341865..26341920, 26342017..26342069,26342214..26342332,26342427..26342533) /locus_tag="TCM_030236" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011359t1" /codon_start=1 /product="Ubiquitin-like superfamily protein isoform 1" /protein_id="EOY28714.1" /db_xref="Phytozome:Sb07g005440.1" /db_xref="TAIR:AT1G62040.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S927" /translation="MAKSSFKLEHPLERRQAEASRIREKYPDRIPVIVEKAERSDIPD IDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTAALMSAMYEENKDE DGFLYMTYSGENTFGLPLLLA" CDS join(26341027..26341067,26341872..26341920, 26342017..26342069,26342214..>26342331) /locus_tag="TCM_030236" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003584; paralog of Thecc1EG011359t1" /codon_start=1 /product="Ubiquitin-like superfamily protein isoform 2" /protein_id="EOY28715.1" /db_xref="TAIR:AT1G62040.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S927" /translation="MAKSSFKLEHPLGSQAEASRIREKYPDRIPVIVEKAERSDIPDI DKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPT" gene complement(26343201..26344098) /locus_tag="TCM_030237" /note="dbxref CacaoGD:Thecc1EG030237" mRNA complement(join(26343201..26343633,26344026..26344098)) /locus_tag="TCM_030237" /product="Ankyrin repeat family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0021s00610.1" /inference="similar to AA sequence:frave:gene19630" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g05815t00001; alternateUTRof:Thecc1EG030237t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8573t1" mRNA complement(join(26343213..26343633,26343866..26343930, 26344026..26344082)) /locus_tag="TCM_030237" /product="Ankyrin repeat family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0021s00610.1" /inference="similar to AA sequence:frave:gene19630" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8573t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8573t1" CDS complement(26343365..26343604) /locus_tag="TCM_030237" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene19630" /codon_start=1 /product="Ankyrin repeat family protein, putative isoform 1" /protein_id="EOY28716.1" /translation="MASDAPSWADQWGAGGIGAMEDEDATAKKENGSKKKSEGKGGFN KAKTAALMGAKKFKLGVSKGITWVKNKCQKKGSSK" CDS complement(26343365..26343604) /locus_tag="TCM_030237" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene19630" /codon_start=1 /product="Ankyrin repeat family protein, putative isoform 1" /protein_id="EOY28717.1" /translation="MASDAPSWADQWGAGGIGAMEDEDATAKKENGSKKKSEGKGGFN KAKTAALMGAKKFKLGVSKGITWVKNKCQKKGSSK" gene complement(26344346..26345820) /locus_tag="TCM_030238" /note="dbxref CacaoGD:Thecc1EG030238" mRNA complement(join(26344346..26344842,26345539..26345820)) /locus_tag="TCM_030238" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage" CDS complement(join(26344746..26344842,26345539..26345729)) /locus_tag="TCM_030238" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28718.1" /translation="MEPYKLQSLLGAAHSGSILYLNREDMRRAKVSGIESMLVFISKG LREGRAVVVGRVVRAQSGSLSNLAYPRGKPMGKAAKAAALRVSKGINTGQE" gene complement(26345975..26352389) /locus_tag="TCM_030239" /note="dbxref CacaoGD:Thecc1EG030239" mRNA complement(join(26345975..26347390,26348022..26349460, 26351535..26351636,26351817..26352389)) /locus_tag="TCM_030239" /product="Ankyrin repeat family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004564001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026176t2" /inference="similar to AA sequence:frave:gene19630" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17012t1" mRNA complement(join(26346686..26347390,26348022..26349683, 26351849..26351874)) /locus_tag="TCM_030239" /product="Binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004564001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026176t2" /inference="similar to AA sequence:frave:gene19630" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc378t10; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17012t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc447t1" CDS complement(join(26346971..26347390,26348022..26349460, 26351535..26351636,26351817..26351826)) /locus_tag="TCM_030239" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene19630; paralog of Thecc1EG026176t2" /codon_start=1 /product="Ankyrin repeat family protein isoform 1" /protein_id="EOY28719.1" /db_xref="TAIR:AT1G62050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXK3" /translation="MKLGQVRGTWKERGETFSSMLRGEIPKEEDWVIRDNQGVETGKK RRMSRSSSASMTTPFPAIKPEAYKHSPVHYAVVLGDHTTLTRLVSTLPKLADPAQIHS ECDSLSQERVADEISAVLDRRDVPFRETPLHLAVRLNDAVAARTLAAAGADVSLQNAA GWNPLQEALCRRSSDIALVLLKLHHRSAWSKWRRRLPRVIAVLRRMRDFYMEISFHFE SSVIPFVGKIAPSDTYKIWKRDGNLRADTSLAGFDGLKIQRADQSFLFLGDGDHVHNI PCGSLLVLNRDDRKIFDAFENAGAPMSESDIAGFYSQTSVYRPGMDVTRAELVGRTNW RRQEKTESVGEWKAKVYEVHNVIFSFRSRKVASSENDVAGSEQVLPLELDEDDDGFLV CENPNFAMPDRRRHSSFVREEREWISVGRKSVDVFPSSAAAAVPPRRSTTFVPTTTTT TVVPPPQTKEKEYVRSLRPSVWLTEQFPLKTEELLPLLDILANKVKAVRRMRELLTTK FPPGTFPVKVAIPVVPTVRVVITFTKFVELQPTEQFYTPLSSPRHFSYGGGRGGGQAE EDQKPETHKSSLPSSSSSSSWPSTAWLRRSNSQSVSASKQQQQQQQQRSSSSSSMAQQ ADPFAIPSGYTWTTADDKSSKMKKSKSTRKSK" CDS complement(join(26346971..26347390,26348022..26349434)) /locus_tag="TCM_030239" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene19630; paralog of Thecc1EG026176t2" /codon_start=1 /product="Binding protein, putative isoform 2" /protein_id="EOY28720.1" /db_xref="TAIR:AT1G62050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXK3" /translation="MSRSSSASMTTPFPAIKPEAYKHSPVHYAVVLGDHTTLTRLVST LPKLADPAQIHSECDSLSQERVADEISAVLDRRDVPFRETPLHLAVRLNDAVAARTLA AAGADVSLQNAAGWNPLQEALCRRSSDIALVLLKLHHRSAWSKWRRRLPRVIAVLRRM RDFYMEISFHFESSVIPFVGKIAPSDTYKIWKRDGNLRADTSLAGFDGLKIQRADQSF LFLGDGDHVHNIPCGSLLVLNRDDRKIFDAFENAGAPMSESDIAGFYSQTSVYRPGMD VTRAELVGRTNWRRQEKTESVGEWKAKVYEVHNVIFSFRSRKVASSENDVAGSEQVLP LELDEDDDGFLVCENPNFAMPDRRRHSSFVREEREWISVGRKSVDVFPSSAAAAVPPR RSTTFVPTTTTTTVVPPPQTKEKEYVRSLRPSVWLTEQFPLKTEELLPLLDILANKVK AVRRMRELLTTKFPPGTFPVKVAIPVVPTVRVVITFTKFVELQPTEQFYTPLSSPRHF SYGGGRGGGQAEEDQKPETHKSSLPSSSSSSSWPSTAWLRRSNSQSVSASKQQQQQQQ QRSSSSSSMAQQADPFAIPSGYTWTTADDKSSKMKKSKSTRKSK" gene 26352574..26355466 /locus_tag="TCM_030240" /note="dbxref CacaoGD:Thecc1EG030240" mRNA join(26352574..26352903,26352990..26353068, 26353155..26353526,26353630..26355466) /locus_tag="TCM_030240" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_1183s00200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033489t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04704t00001" CDS join(26352898..26352903,26352990..26353068, 26353155..26353526,26353630..26355164) /locus_tag="TCM_030240" /note="paralog of Thecc1EG033489t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28721.1" /db_xref="TAIR:AT3G44710.1" /translation="MKQKVVFKVVMNNEKSRTKALKIAASLPGVNSVAIRPADQSQME VTGDGFDAVRLVSLLRKRVGHAEQISIDLIGGKEKQENKKKTGFVCLKGEGDDKSPIE VKSDGIDADRQKERFNYGVSPLFPSLFGFSNNQPEFDFGEKQVRPPEYTLWFESVSLK GDDKKAIEITGDRNDVDLGKRKRVADLEHAEQVSKTEEKKEGKSTVYVREQDNQHEDT SSSPCIQKPELVSIGPYHRDKDLPLNKYKYSFLQNFLSRTRNQGKDLCFYVRQMMTLE LRTRRCYSDEDLSMCSSEFVEMMLVDGCFVMEVLHHFGRGKESEDGIFPIEPWQIPIL VRDLLLLENQIPFFVLENLFDLSKSEEATATVSVPTMALKFIDLAFPLSMDFIINHLE SPKHLLHLLLETIRPSNPSTNSLSLFLKTIHLIAMILSNPISLLLFLNNITRRRVSHL KTPASSKQKGHHLSIQPKPSTSKTADEVKVYLESARELQKSGIEFRPKRADRFTDIHC KDGVLEIPPVTINDLFLAILVNGMAFEQRSTGCSKDLTAYVSFMSSLIRHPTDVELLS SCGIISRFSLENERVASSFTYLQSKISNRGIPQDSYLYMTVMETKCYYIEDRVTRLRY SLPDGGRITRMHYFWRDPKILLFCITSLWFVFSCFKFGY" gene complement(26355775..26357529) /locus_tag="TCM_030241" /note="dbxref CacaoGD:Thecc1EG030241" mRNA complement(join(26355775..26356404,26356989..26357096, 26357184..26357529)) /locus_tag="TCM_030241" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage" mobile_element 26356110..26356158 /note="source:CACAO_M_E69780_F2_scaffold_9 4288 4336" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(26356162..26356404,26356989..26357096, 26357184..26357273)) /locus_tag="TCM_030241" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28722.1" /translation="MTGEPIRIGGVPLLMDGDGTGGYIETMGKLVGFLVPVSQKPGSH NSLMEVNDLREKGRKIKLCAMENMAMVFGFGLEDCLFGFVGPRPVVTDCISQHASKPT RVNKKTKGKAKSAVAVLSYSNYLRSTEEDTEEWSMINAAELNSR" gene 26358164..26362999 /locus_tag="TCM_030242" /note="dbxref CacaoGD:Thecc1EG030242" mRNA join(26358164..26358888,26360098..26360168, 26360246..26360338,26360428..26360628,26360830..26360910, 26361010..26361117,26361654..26361731,26361808..26361897, 26361984..26362048,26362279..26362398,26362486..26362666, 26362793..26362999) /locus_tag="TCM_030242" /product="Arogenate dehydratase 1, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011909t1" /inference="similar to AA sequence:Phytozome:POPTR_0021s00590.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc79t7" CDS join(26358612..26358888,26360098..26360168, 26360246..26360338,26360428..26360628,26360830..26360910, 26361010..26361117,26361654..26361731,26361808..26361897, 26361984..26362048,26362279..26362398,26362486..26362666, 26362793..26362855) /locus_tag="TCM_030242" /note="paralog of Thecc1EG011909t1" /codon_start=1 /product="Arogenate dehydratase 1, putative" /protein_id="EOY28723.1" /db_xref="Phytozome:POPTR_0021s00590.1" /db_xref="TAIR:AT1G11790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SA96" /translation="MAIKCAPNWVCSQMPHSHLGTADLGSTRGRIVLEVRPPKWKCCA LGSSAPRATSAIEGKPYGTEVETFQTGKTDQVQDTESKVFHEDLSLLPKPLSATGLST YDDDDGSNMRVAYKGMPGAYGEAAALKAYPNCETVPCEKYEKAFKAVELWLVEKAVLP IENSIGGSIHRNYDLLLRHRLHIVREVQLAVNHCLLALPGVRMEEMDRVLGHPEAFAQ CEMTLSNMGFVRVNSDDCASAAQMLEQIAVLTGARNVGAIASARAAEIYGLHILARKV QDEEHNITRYLVLAREPIIPKTDKPYKTSIVFSLEEGPGMLFKALAVFTLRGINLSKM ESRPLKMHPLRVDDSDKGTAKCFDYLFYIDFEASMAEQCAQNALANLEVSPLKLLNYV FNLNMQHFSASLVPIRWIQLSRWILLQRSPCWSVTPSDVDGSTHMTCTYESSLDSFED GEILGMERFLEYVEGLLISSKASSA" gene complement(26363178..26366308) /locus_tag="TCM_030243" /note="dbxref CacaoGD:Thecc1EG030243" mRNA complement(join(26363178..26363545,26363696..26363848, 26363969..26364076,26364198..26364245,26364503..26364715, 26364794..26364858,26365239..26365363,26365470..26365615, 26365947..26366011)) /locus_tag="TCM_030243" /product="Glyoxalase I isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012714001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037825t1" /inference="similar to AA sequence:Phytozome:Glyma09g00660.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08864t00001; alternateUTRof:Thecc1EG030243t1; inference alignment:Newbler:10:TSA:cgbaB_g08864t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc407t9" mRNA complement(join(26363254..26363545,26363696..26363848, 26363969..26364076,26364198..26364245,26364503..26364715, 26364794..26364858,26365239..26365363,26365470..26365607, 26365947..26366308)) /locus_tag="TCM_030243" /product="Glyoxalase I isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012714001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037825t1" /inference="similar to AA sequence:Phytozome:Glyma09g00660.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08864t00001" CDS complement(join(26363504..26363545,26363696..26363848, 26363969..26364076,26364198..26364245,26364503..26364715, 26364794..26364858,26365239..26365363,26365470..26365585)) /locus_tag="TCM_030243" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037825t1" /codon_start=1 /product="Glyoxalase I isoform 1" /protein_id="EOY28724.1" /db_xref="Phytozome:Glyma09g00660.1" /db_xref="TAIR:AT1G11840.6" /db_xref="UniProtKB/TrEMBL:UniRef50_Q948T6" /translation="MAEGLAAVPSTELLEWPKKDKRRFLHAVYRVGDLDRTIKFYTEC FGMKLLRKRDIPEEKYSNAFLGFGPEVSHFVVELTYNYGVTSYDIGTGFGHFAIATPD VYKMVEDIRAKGGNITREPGPVKGGSTVIAFVKDPDGYVFELIQRASTPEPLCQVMLR VGDLYRSVKFYEKALGMKLVKKVDRPEYKYSIAMMGYAEELETIVLELTYNYGVTEYT KGNAYAQVAISTDDVYKSGEVVEHVIQELGGKVTRKPGPVPGINTKITSFLDPDGWKT VLVDNEDFLKELN" CDS complement(join(26363504..26363545,26363696..26363848, 26363969..26364076,26364198..26364245,26364503..26364715, 26364794..26364858,26365239..26365363,26365470..26365585)) /locus_tag="TCM_030243" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037825t1" /codon_start=1 /product="Glyoxalase I isoform 1" /protein_id="EOY28725.1" /db_xref="Phytozome:Glyma09g00660.1" /db_xref="TAIR:AT1G11840.6" /db_xref="UniProtKB/TrEMBL:UniRef50_Q948T6" /translation="MAEGLAAVPSTELLEWPKKDKRRFLHAVYRVGDLDRTIKFYTEC FGMKLLRKRDIPEEKYSNAFLGFGPEVSHFVVELTYNYGVTSYDIGTGFGHFAIATPD VYKMVEDIRAKGGNITREPGPVKGGSTVIAFVKDPDGYVFELIQRASTPEPLCQVMLR VGDLYRSVKFYEKALGMKLVKKVDRPEYKYSIAMMGYAEELETIVLELTYNYGVTEYT KGNAYAQVAISTDDVYKSGEVVEHVIQELGGKVTRKPGPVPGINTKITSFLDPDGWKT VLVDNEDFLKELN" gene 26368596..26371405 /locus_tag="TCM_030244" /note="dbxref CacaoGD:Thecc1EG030244" mRNA join(26368596..26369150,26369247..26369382, 26369482..26369608,26369807..26370620,26370712..26371405) /locus_tag="TCM_030244" /product="APS reductase 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01220.1" /inference="similar to AA sequence:ricco:29842.m003580" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:PASA:2:TSA:puevd3b029251t1a2; inference alignment:Newbler:10:TSA:cgbaB_g05851t00001" mRNA join(26368596..26369150,26369239..26369382, 26369482..26369608,26369807..26370620,26370712..26371291) /locus_tag="TCM_030244" /product="APS reductase 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01220.1" /inference="similar to AA sequence:ricco:29842.m003580" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05851t00001" CDS join(26369066..26369150,26369239..26369382, 26369482..26369608,26369807..26370620,26370712..26370942) /locus_tag="TCM_030244" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003580" /codon_start=1 /product="APS reductase 3 isoform 1" /protein_id="EOY28726.1" /db_xref="TAIR:AT4G21990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P92980" /translation="MAFAVTSSSSTAISGSGFSRSGASSDIKAPQIGSIRLADRHATV NLSQKRCAVRPVNAEPKRNDSVVPSAATIVAPEVSEKVEVEDYELLAKELDKASPLEI MDRALEKFGDDIAIAFSGAEDVALIEYAKLTGRPFRVFSLDTGRLNPETYRFFDEVEK HYGIRIEYMFPDSVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITG QRKDQSPGTRSEVAVVQVDPVFEGLEGGVGSLVKWNPVANVDGKDIWNFLRAMNVPVN SLHSQGFVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNLKQDSAAQLNGN GNGAAHSNGTATQSDIFNSQSLVTLSRTGIENLARLENRKEPWLVVLYAPWCPFCQAM EESYVELAEKLAGSGVKVAKFRADGEQKEYAQTELQLGSFPTILFFPKHSSRPIKYAS EKRDVDSLMAFINALR" CDS join(26369559..26369608,26369807..26370620, 26370712..26370942) /locus_tag="TCM_030244" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003580" /codon_start=1 /product="APS reductase 3 isoform 2" /protein_id="EOY28727.1" /db_xref="TAIR:AT4G21990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P92980" /translation="MDRALEKFGDDIAIAFSGAEDVALIEYAKLTGRPFRVFSLDTGR LNPETYRFFDEVEKHYGIRIEYMFPDSVEVQALVRSKGLFSFYEDGHQECCRVRKVRP LRRALKGLRAWITGQRKDQSPGTRSEVAVVQVDPVFEGLEGGVGSLVKWNPVANVDGK DIWNFLRAMNVPVNSLHSQGFVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHK GNLKQDSAAQLNGNGNGAAHSNGTATQSDIFNSQSLVTLSRTGIENLARLENRKEPWL VVLYAPWCPFCQAMEESYVELAEKLAGSGVKVAKFRADGEQKEYAQTELQLGSFPTIL FFPKHSSRPIKYASEKRDVDSLMAFINALR" mobile_element complement(26371448..26371772) /note="source:scaffold_7_CACTA_0779 12212 12571" /mobile_element_type="transposon:TIR/CACTA" gene 26374015..26377587 /locus_tag="TCM_030245" /note="dbxref CacaoGD:Thecc1EG030245" mRNA join(26374015..26374409,26374511..26375821, 26376838..26376865,26377004..26377587) /locus_tag="TCM_030245" /product="O-Glycosyl hydrolases family 17 protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012711001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011015t1" /inference="similar to AA sequence:Phytozome:POPTR_0021s00450.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03090t00001" CDS join(26374340..26374409,26374511..26375821, 26376838..26376865,26377004..26377166) /locus_tag="TCM_030245" /note="paralog of Thecc1EG011015t1" /codon_start=1 /product="O-Glycosyl hydrolases family 17 protein" /protein_id="EOY28728.1" /db_xref="Phytozome:POPTR_0021s00450.1" /db_xref="TAIR:AT1G11820.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H7K8" /translation="MANSKLITFVITFVFFYFTVPSTAKSLTLVGEIKQQSQQEDREP FVGVNIGTDVSNLLAATDLVSFLQVQKISHIRLYDANPDILKALAKTKIRVIISVPNN QLLAIGSSNTTAASWIGRNVVAYYPETLITAIAVGDEVLTTVPSSAPLLLPAIQSLYS ALVAANLHTQIKVSTPHAASIILDTFPPSQAFFNQSLTSVMAPLLQFLSRTGSPLMMN LYPYYVFMENKGVVPLDNSLFKPLTPSKEMVDPNTLLHYTNVLDAMIDAAYVSMKNLN VTDVVVLVTESGWPSKGDSKEPYATIDNADTYNSNLIKHVLDHSGTPLHPEITSSVYI YELFNEDLRSPPVSEANWGLFYSNSTPVYLLHVSGSGTFLANDTTNQTYCITMDGVDS KTLQAALDWACGPGRANCSEIQPGEDCYQPNNVKNHASYAFDSYYQKEGRVSGSCDFK GVAMITTTDPSHGSCVFPGSKKVSNKTRTILNSTEVSGAAERLKFITFNSSQISATTI AAFCILLSIPFVTTR" gene 26377871..26380773 /locus_tag="TCM_030246" /note="dbxref CacaoGD:Thecc1EG030246" mRNA join(26377871..26378587,26379201..26379346, 26379441..26379551,26379841..26380773) /locus_tag="TCM_030246" /product="Endonuclease/exonuclease/phosphatase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012711001" /inference="similar to AA sequence:Phytozome:GSVIVT01012711001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc476t3" CDS join(26378086..26378587,26379201..26379346, 26379441..26379551,26379841..26380425) /locus_tag="TCM_030246" /codon_start=1 /product="Endonuclease/exonuclease/phosphatase family protein" /protein_id="EOY28729.1" /db_xref="Phytozome:GSVIVT01012711001" /db_xref="TAIR:AT1G11800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GC61" /translation="MVFSLTPLHFSSNLSPGISKTSHLLLLRRHLSRPIENMSWSCKK CTFLNSPSQNAACKICLSPPSPSPSPSSPPKWPCKACTFLNLYKNPNCEICGTRAPVS SLSSFEDLKDTSLDGELDSSVGSVFYPLKPCSKRKIRYPDVGNEDCLESSSFRGIKAS NKAVAVEEDSNLGAVESSLKILSYNVWFREDLEVHKRMKAIGDLIQLHSPDLICFQEV TPNIYDIFRQSNWWNVYRCSVSVDMANSRGYFCMQLSKRPVKSFSCKPFGNSVMGREL CMTEVEVFGGKSLVVATSHLESPSPAPPKWDQMFSKERVEQAKEAINILKNNPDVIFG GDMNWDDKLDGQFPLPDGWIDAWRELRSAEDGWTYDTKSNQMLSGNRTLQKRLDRFVC NLNDFKVSGIDMIGIEALPGLSYIKEKNVRKEKKLLELPVLPSDHYGLLLTISTK" gene 26380921..26385894 /locus_tag="TCM_030247" /note="dbxref CacaoGD:Thecc1EG030247" mRNA join(26380921..26381347,26381851..26382007, 26382139..26382248,26383466..26383736,26383861..26383963, 26384138..26384483,26384570..26384938,26385021..26385099, 26385221..26385716) /locus_tag="TCM_030247" /product="SKU5 similar 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011914t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s01070.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02929t00002" mRNA join(26381643..26382007,26382139..26382248, 26383466..26383736,26383861..26383963,26384138..26384483, 26384570..26384938,26385021..26385099,26385218..26385894) /locus_tag="TCM_030247" /product="SKU5 similar 4 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011914t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s01070.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8705t1; inference alignment:Newbler:10:TSA:cgbaL_g02929t00002" mRNA join(26381643..26382007,26382139..26382248, 26383466..26383736,26383861..26383963,26384138..26384483, 26384570..26384938,26385021..26385099,26385221..26385894) /locus_tag="TCM_030247" /product="SKU5 similar 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011914t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s01070.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8705t3; alternateUTRof:Thecc1EG030247t1; inference alignment:Newbler:10:TSA:cgbaL_g02929t00002" CDS join(26381870..26382007,26382139..26382248, 26383466..26383736,26383861..26383963,26384138..26384483, 26384570..26384938,26385021..26385099,26385218..26385433) /locus_tag="TCM_030247" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG011914t1" /codon_start=1 /product="SKU5 similar 4 isoform 3" /protein_id="EOY28732.1" /db_xref="Phytozome:POPTR_0004s01070.1" /db_xref="TAIR:AT4G22010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C5YDY7" /translation="MEDGKLLLCCFIAYILFFGVNGENPYRYITWKVTYGDIYPLGVK QQGILINGQFPGPQIDAVTNDNLIISVYNYLNEPFLISWNGVQQRRNSWQDGVFGTNC PIRPGKNFTYVLQVKDQIGSFFYFPSLLFHKAAGGYGGIRIWSRPKIPVPFPTPAGDF TVLAGDWYKRNHYVLRRLLDSGRNLPFPDGLLINGRGWNGYTFTVDPGRTYRFRVSNV GLTTSINFRIQGHNLKLIEVEGSHTLQNTYSSFDIHLGQSCSFLVTADQVSKDYYVVV SSRFTSRVLTTTAVLHYSNSKQGVSGPVPGASTIQIAPSLLQERSIRWNLTASGPRPN PQGSYHYGLITPSRTIMLANSAPWINGKQRYAVNGVSYVPADTPLKLADYFKIPGVFN LGSIPTWPPSGNNAYFQTSVMAANFREYIEIVFQNWEDTVQSWHIDGYSFFVVGMDGG QWTPGSRANYNLRDTVARCTTQQVYPRSWTAIYMALDNVGMWNIRSENWARQYLGQQF YLRVYSPANSWRDELPIPKNAPLCGRARGRHTRPL" CDS join(26381870..26382007,26382139..26382248, 26383466..26383736,26383861..26383963,26384138..26384483, 26384570..26384938,26385021..26385099,26385221..26385433) /locus_tag="TCM_030247" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011914t1" /codon_start=1 /product="SKU5 similar 4 isoform 1" /protein_id="EOY28730.1" /db_xref="Phytozome:POPTR_0004s01070.1" /db_xref="TAIR:AT4G22010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C5YDY7" /translation="MEDGKLLLCCFIAYILFFGVNGENPYRYITWKVTYGDIYPLGVK QQGILINGQFPGPQIDAVTNDNLIISVYNYLNEPFLISWNGVQQRRNSWQDGVFGTNC PIRPGKNFTYVLQVKDQIGSFFYFPSLLFHKAAGGYGGIRIWSRPKIPVPFPTPAGDF TVLAGDWYKRNHYVLRRLLDSGRNLPFPDGLLINGRGWNGYTFTVDPGRTYRFRVSNV GLTTSINFRIQGHNLKLIEVEGSHTLQNTYSSFDIHLGQSCSFLVTADQVSKDYYVVV SSRFTSRVLTTTAVLHYSNSKQGVSGPVPGASTIQIAPSLLQERSIRWNLTASGPRPN PQGSYHYGLITPSRTIMLANSAPWINGKQRYAVNGVSYVPADTPLKLADYFKIPGVFN LGSIPTWPPSGNNAYFQTSVMAANFREYIEIVFQNWEDTVQSWHIDGYSFFVVGMDGG QWTPGSRANYNLRDTVARCTTQVYPRSWTAIYMALDNVGMWNIRSENWARQYLGQQFY LRVYSPANSWRDELPIPKNAPLCGRARGRHTRPL" CDS join(26381870..26382007,26382139..26382248, 26383466..26383736,26383861..26383963,26384138..26384483, 26384570..26384938,26385021..26385099,26385221..26385433) /locus_tag="TCM_030247" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011914t1" /codon_start=1 /product="SKU5 similar 4 isoform 1" /protein_id="EOY28731.1" /db_xref="Phytozome:POPTR_0004s01070.1" /db_xref="TAIR:AT4G22010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C5YDY7" /translation="MEDGKLLLCCFIAYILFFGVNGENPYRYITWKVTYGDIYPLGVK QQGILINGQFPGPQIDAVTNDNLIISVYNYLNEPFLISWNGVQQRRNSWQDGVFGTNC PIRPGKNFTYVLQVKDQIGSFFYFPSLLFHKAAGGYGGIRIWSRPKIPVPFPTPAGDF TVLAGDWYKRNHYVLRRLLDSGRNLPFPDGLLINGRGWNGYTFTVDPGRTYRFRVSNV GLTTSINFRIQGHNLKLIEVEGSHTLQNTYSSFDIHLGQSCSFLVTADQVSKDYYVVV SSRFTSRVLTTTAVLHYSNSKQGVSGPVPGASTIQIAPSLLQERSIRWNLTASGPRPN PQGSYHYGLITPSRTIMLANSAPWINGKQRYAVNGVSYVPADTPLKLADYFKIPGVFN LGSIPTWPPSGNNAYFQTSVMAANFREYIEIVFQNWEDTVQSWHIDGYSFFVVGMDGG QWTPGSRANYNLRDTVARCTTQVYPRSWTAIYMALDNVGMWNIRSENWARQYLGQQFY LRVYSPANSWRDELPIPKNAPLCGRARGRHTRPL" gene 26386581..26388924 /locus_tag="TCM_030248" /note="dbxref CacaoGD:Thecc1EG030248" mRNA join(26386581..26387154,26387787..26388118, 26388399..26388475,26388597..26388924) /locus_tag="TCM_030248" /product="Homeodomain-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011166t1" /inference="similar to AA sequence:ricco:29842.m003572" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc5655t1_C2" CDS join(26387857..26388118,26388399..26388475, 26388597..26388644) /locus_tag="TCM_030248" /note="dbxref ricco:29842.m003572; paralog of Thecc1EG011166t1" /codon_start=1 /product="Homeodomain-like superfamily protein" /protein_id="EOY28733.1" /db_xref="TAIR:AT2G40260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ65" /translation="MKRVDGDSSLKGSPSSSLDSGSAYYSQSSTMRATRRPMDDNLVP EISLKSPTAVVRPYARSKMPRLRWTPDLHHCFVHAVEHLGGEDRATPKMVLQIMDVKG LTISHVKSHLQMYRSMKHEQMIRGNT" gene 26388971..26390270 /locus_tag="TCM_030249" /note="dbxref CacaoGD:Thecc1EG030249" mRNA join(26388971..26389461,26389643..26389763, 26389863..26390270) /locus_tag="TCM_030249" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc4513t1" CDS join(26389253..26389461,26389643..26389763, 26389863..26390102) /locus_tag="TCM_030249" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28734.1" /translation="MSYVWFCIIEAAMAARRNDQKVSNLINRQQISHQLKDGGSSINR NSFQNPGFRTQEMASNSVLPEQRYPVNGNKVSDQLPDAEVADKVSEQQRSDSYIIFKD LLNSCMTPERNGQAKVLGQHGGAGAAGWKCSSHRRLVDLADHQAADQRISDGSTCLSA NSKVSQPMLRLSKAKTLEVNDVSLELTLA" gene complement(26390272..26391486) /locus_tag="TCM_030250" /note="dbxref CacaoGD:Thecc1EG030250" mRNA complement(26390272..26391486) /locus_tag="TCM_030250" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.26 coverage" CDS complement(26391207..26391413) /locus_tag="TCM_030250" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28735.1" /translation="MTYLCLDLVVGPVLFFLLFNDEEVPSANCLFGNLIKFYYKPHFE VSNSCSMMIVSYSQSRTRKKGTLL" gene 26391581..26392094 /locus_tag="TCM_030251" /note="dbxref CacaoGD:Thecc1EG030251" mRNA 26391581..26392094 /locus_tag="TCM_030251" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.83 coverage" CDS 26391634..26392029 /locus_tag="TCM_030251" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28736.1" /translation="MNAARFSLLVLVCALLCAFTEARKLVEAHYALGEEKELFPFVPD FGSGLGWPGAGAGAAGAGGGGGGGGGGGGGGKGGAGAGFGGGAGFGSGKGGGGGGGGG GGGGGGSLGGGYGGGFGAGFGGGIGSGQP" gene 26394618..26395728 /locus_tag="TCM_030252" /note="dbxref CacaoGD:Thecc1EG030252" mRNA join(26394618..26395334,26395407..26395728) /locus_tag="TCM_030252" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s01050.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc3806t2" CDS join(26394645..26395334,26395407..26395718) /locus_tag="TCM_030252" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28737.1" /translation="MAPSAKFWYVPLLLLSVAGALSGDESGYGGPGGWRYDDSDNEDD SYCSYRSWRSCGSFFGRGGKGYGGGGGGGGGGEGGGVGNGVGHGEGHGAGGGSGNGGA GGGGGGGDGAGAGNGSGHGEGFGAGGGVGGIGGGAGGGGGEGGGGGANGGSGHGSGYG AGGGIGVANGGGGGGGEGGGSGYGSSGEGFGHGSGFGAGASIAGEAGGGGGGGGGGKG SNGGYGHGSGYGGGGGGSGGGAGHGSGFGEGFGIGSTGGGGGGGGGGGGGEGYGHGEG MGFGGGIGGSNDEKGLGGGQGGGNGINMGFGMGVGIGFGFGIGTGGGKDSNNNNGDP" gene 26396234..26399579 /locus_tag="TCM_030253" /note="dbxref CacaoGD:Thecc1EG030253" mRNA join(26396234..26397108,26397255..26397911, 26398005..26398436,26398764..26398936,26399036..26399219, 26399309..26399579) /locus_tag="TCM_030253" /product="HAT helix, U3 small nucleolar RNA-associated protein 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012705001" /inference="similar to AA sequence:Phytozome:GSVIVT01012705001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc559t2" CDS join(26396698..26397108,26397255..26397911, 26398005..26398436,26398764..26398936,26399036..26399219, 26399309..26399401) /locus_tag="TCM_030253" /codon_start=1 /product="HAT helix, U3 small nucleolar RNA-associated protein 6" /protein_id="EOY28738.1" /db_xref="Phytozome:GSVIVT01012705001" /db_xref="TAIR:AT4G28200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M0I7" /translation="MADVVQYRLERMVDELDDLERRGLFTRREIAEIVKQRRKFEYRL KRPSPLKQDYIAYIDYETQLDSLRRLRKKAATRELVRQGKKKTKTRKSVSDFAPVSRI MEIYRLAVMRYKGDVALWFRYLEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWE FDHNLNVAAARALMQNGLRMCPNSEDLWVEYLRMELTYLNKLKARKVALGEDKGTLVR DHKDADEKQWKEENKDLFMSLDDEEKGNDDHGSDEESEKKLDLFLEHASGILKTIYKG AIQAIPSSFGLRKQFLEILEAIEVADSEELHEEILSDMKRDFSADPEYWDWLARLEMS DASSSGKKNEDAMLSQLQKAVRVYEEATKTVPSAVMFNLYIKFFMDVIASERGEMEAY SSYVSHILKVYEKAETKGCLTEELACQYISFYTQIGRLEEAKKVAEKLCSGKLSDSVR LWLLRISVEIRCVTKSSLSPSKAETLSIFELLKTVLTKMSISEAESLWMMALKFFANQ KKYFEKLIELSLISVAKYGGRDNGFSLSSAVVNFILHKDGLQHAREVYKRFLALPHPG LALYRNCIELESNFASLGDEDSLVNGRKLYEAALATYDQDASLWKDYYSLETKLGTSE SAAAVYWRARKTLKDSAVVFTSPDR" gene complement(26399619..26401811) /locus_tag="TCM_030254" /note="dbxref CacaoGD:Thecc1EG030254" mRNA complement(join(26399619..26399970,26400181..26400286, 26400427..26400599,26400677..26400835,26400945..26401064, 26401158..26401386,26401623..26401706)) /locus_tag="TCM_030254" /product="F19K23.17 protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012704001" /inference="similar to AA sequence:Phytozome:GSVIVT01012704001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09506t00001" mRNA complement(join(26399692..26399970,26400181..26400286, 26400427..26400599,26400677..26400835,26400945..26401064, 26401158..26401625)) /locus_tag="TCM_030254" /product="F19K23.17 protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012704001" /inference="similar to AA sequence:Phytozome:GSVIVT01012704001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00116t00007; alternateUTRof:Thecc1EG030254t1; inference alignment:Newbler:10:TSA:cgbaP2_g09506t00001" mRNA complement(join(26399749..26399970,26400181..26400286, 26400427..26400599,26400677..26400835,26401158..26401386, 26401623..26401811)) /locus_tag="TCM_030254" /product="F19K23.17 protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012704001" /inference="similar to AA sequence:Phytozome:GSVIVT01012704001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01336t00002; inference alignment:Newbler:10:TSA:cgbaP2_g09506t00001" CDS complement(join(26399941..26399970,26400181..26400286, 26400427..26400599,26400677..26400835,26401158..26401367)) /locus_tag="TCM_030254" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="F19K23.17 protein isoform 3" /protein_id="EOY28741.1" /db_xref="Phytozome:GSVIVT01012704001" /db_xref="TAIR:AT1G62250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04589" /translation="MMLTVNPPGAIGKSQAAFLGNITLFCKLPSAAIFRKLPAGIHCN LPSWKDSRKLTTHHLVSHRLAPKRWLEFISAGVNAYALGCTDEGLRKELVAMKESGIE IEAMQNYGGSTSLKSKICAEEVDECILWLSIIFITILCTPQPTIVRWSSTPAVSDDVL YQWKGFCALIANAYYIRGMAWLPVKTLQLEQMAVVERAEEPSVVASRMRLVFSTLEVV SPQWPRV" CDS complement(join(26399941..26399970,26400181..26400286, 26400427..26400599,26400677..26400835,26400945..26401064, 26401158..26401367)) /locus_tag="TCM_030254" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="F19K23.17 protein isoform 1" /protein_id="EOY28739.1" /db_xref="Phytozome:GSVIVT01012704001" /db_xref="TAIR:AT1G62250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04589" /translation="MMLTVNPPGAIGKSQAAFLGNITLFCKLPSAAIFRKLPAGIHCN LPSWKDSRKLTTHHLVSHRLAPKRWLCQSSGSVSSDDEYRSSRNIAISLFRRYRNVID RGGGDNLKEFISAGVNAYALGCTDEGLRKELVAMKESGIEIEAMQNYGGSTSLKSKIC AEEVDECILWLSIIFITILCTPQPTIVRWSSTPAVSDDVLYQWKGFCALIANAYYIRG MAWLPVKTLQLEQMAVVERAEEPSVVASRMRLVFSTLEVVSPQWPRV" CDS complement(join(26399941..26399970,26400181..26400286, 26400427..26400599,26400677..26400835,26400945..26401064, 26401158..26401367)) /locus_tag="TCM_030254" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="F19K23.17 protein isoform 1" /protein_id="EOY28740.1" /db_xref="Phytozome:GSVIVT01012704001" /db_xref="TAIR:AT1G62250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04589" /translation="MMLTVNPPGAIGKSQAAFLGNITLFCKLPSAAIFRKLPAGIHCN LPSWKDSRKLTTHHLVSHRLAPKRWLCQSSGSVSSDDEYRSSRNIAISLFRRYRNVID RGGGDNLKEFISAGVNAYALGCTDEGLRKELVAMKESGIEIEAMQNYGGSTSLKSKIC AEEVDECILWLSIIFITILCTPQPTIVRWSSTPAVSDDVLYQWKGFCALIANAYYIRG MAWLPVKTLQLEQMAVVERAEEPSVVASRMRLVFSTLEVVSPQWPRV" gene complement(26402214..26405268) /locus_tag="TCM_030256" /note="dbxref CacaoGD:Thecc1EG030256" mRNA complement(join(26402214..26402799,26402929..26403047, 26403499..26404073,26404833..26405268)) /locus_tag="TCM_030256" /product="Glycine cleavage T-protein family isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003567" /inference="similar to AA sequence:ricco:29842.m003567" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8744t1" CDS complement(join(26402253..26402799,26402929..26403047, 26403499..26404056)) /locus_tag="TCM_030256" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003567" /codon_start=1 /product="Glycine cleavage T-protein family isoform 1" /protein_id="EOY28742.1" /db_xref="TAIR:AT1G11860.3" /db_xref="UniProtKB/TrEMBL:UniRef50_O65396" /translation="MRGSLWQLGQSITRRLAQADKKAITRRYFASEADLKKTVLYDFH VAHGGKMVPFAGWSMPIQYKDSIMDSTINCRQNGGLFDVSHMCGLSLKGKDCVPFLEK LVIADVAGLAHGTGTLTVFTNEKGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEE HMKAFKAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGA TCFLTRTGYTGEDGFEISVPSENAEDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCL YGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEVILKQLAEGPSIRRVGFISTGPPP RSHSEIQDEKGSNIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKAKILVRGKAYDGV VTKMPFVPTKYYKPS" mRNA complement(join(<26402651..26402799,26402929..26403047, 26403277..26403309,26403499..26404073,26404833..26405106)) /locus_tag="TCM_030256" /product="Glycine cleavage T-protein family isoform 2" /inference="alignment:exonerate- protein:2:ricco:29842.m003567" /inference="similar to AA sequence:ricco:29842.m003567" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc617t3_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8744t1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc607t10_C2" CDS complement(join(<26402652..26402799,26402929..26403047, 26403499..26404056)) /locus_tag="TCM_030256" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003567" /codon_start=1 /product="Glycine cleavage T-protein family isoform 2" /protein_id="EOY28743.1" /db_xref="TAIR:AT1G11860.3" /db_xref="UniProtKB/TrEMBL:UniRef50_O65396" /translation="MRGSLWQLGQSITRRLAQADKKAITRRYFASEADLKKTVLYDFH VAHGGKMVPFAGWSMPIQYKDSIMDSTINCRQNGGLFDVSHMCGLSLKGKDCVPFLEK LVIADVAGLAHGTGTLTVFTNEKGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEE HMKAFKAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGA TCFLTRTGYTGEDGFEISVPSENAEDLAKAILEKSEGKVRLTGLGARDSLRLEAGLC" gene complement(26405633..26409906) /locus_tag="TCM_030257" /note="dbxref CacaoGD:Thecc1EG030257" mRNA complement(join(26405633..26406411,26406690..26406884, 26407094..26407204,26407290..26407380,26407650..26407744, 26407892..26408182,26408267..26408311,26408460..26408515, 26408659..26408733,26408834..26408904,26409149..26409185, 26409277..26409337,26409440..26409502,26409602..26409673, 26409774..26409906)) /locus_tag="TCM_030257" /product="Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex" /inference="alignment:exonerate- protein:2:ricco:55024.m000017" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030840t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012696001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05769t00001" CDS complement(join(26406220..26406411,26406690..26406884, 26407094..26407204,26407290..26407380,26407650..26407744, 26407892..26408182,26408267..26408311,26408460..26408515, 26408659..26408733,26408834..26408904,26409149..26409185, 26409277..26409337,26409440..26409502,26409602..26409649)) /locus_tag="TCM_030257" /note="paralog of Thecc1EG030840t1" /codon_start=1 /product="Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex" /protein_id="EOY28744.1" /db_xref="Phytozome:GSVIVT01012696001" /db_xref="TAIR:AT4G26910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XVM2" /translation="MWAVLRRRVASSSSSSVLAQSFRDARSSRCYISTPIETLVSRGG SRIAGIVGHLGYQVVTGFPIGSKPLREVISLVRKYPPVSVHTRLFSADTGELVDAVVP FMGESVTDGTLANFLKQPGDRVELDEPIAQIETDKVTIEVNSPEAGVIEQLVAKVGDT VEPGTKIAVISKSGGVTHVAPSEEKPSKAVSELSTARTKKVDMEKPKAETPPPKSETP PIKDKPKAPSLPPSKPSAKEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTF NEVDMTNLMKLRSDYKDAFVEQHGVKLGLMSGFVKAAVSALQNQPIINAVIDGDDIIY RDYIDISIAVGTPKGLVVPVIRNADRMNFAEIEKEINILAKKANDGSISIDEMAGGSF TISNGGVYGSLLSTPIINPPQSAILGMHSLVSRPMAVGGEIVPRPMMYIALTYDHRLI DGREAVFFLRRIKDVVEDPRRLLLDI" gene complement(26411044..26412686) /locus_tag="TCM_030258" /note="dbxref CacaoGD:Thecc1EG030258" mRNA complement(26411044..26412686) /locus_tag="TCM_030258" /product="F-box family protein with a domain of Uncharacterized protein function" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s00960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030259t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s01020.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1280t1" CDS complement(26411276..26412550) /locus_tag="TCM_030258" /note="paralog of Thecc1EG030259t1" /codon_start=1 /product="F-box family protein with a domain of Uncharacterized protein function" /protein_id="EOY28745.1" /db_xref="Phytozome:POPTR_0004s01020.1" /db_xref="TAIR:AT4G04480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N8C4" /translation="MASLQASNLVLSSSSKQIHAAISVPKLPSIRFSVPKVPTRVLSD ELNARDGFISTVPIEKYITRTTLVQESSSFSMATIQLYALLEAVADRVEMHSNIGEQR ENWNTLLLNSINMITLTAATMAGVTATGGAGVSIWGLKLASTLLFSTATGLLVMMNKI QPSQLVEEQRNATRLFKQLQSQIRTQLAVGSPSKEDVKDAMEKVLALDKAYPLPLLGV MLEKFPASLEPAVWWPKNQSPKTNKSQETKHFNRKVENNGWTEELETEMREIAEVIKR KDSEDYERLGNKALKINKVLAKSGPLLTGIAALGSAFMGSSNGPWAAIVAAVAGALAS AVNTFEHGCQVGMVFEMYRNNTGFFKLVQESIESNLDENDVEKRENGELLEMKVALQL GRSLSQLRDLAKKSSYSRIEGSPIDEFASKLF" gene complement(26413649..26416182) /locus_tag="TCM_030259" /note="dbxref CacaoGD:Thecc1EG030259" mRNA complement(join(26413649..26415551,26416012..26416182)) /locus_tag="TCM_030259" /product="F-box family protein with a domain of Uncharacterized protein function" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s00960.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030260t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s01020.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(26413852..26415126) /locus_tag="TCM_030259" /note="paralog of Thecc1EG030260t1" /codon_start=1 /product="F-box family protein with a domain of Uncharacterized protein function" /protein_id="EOY28746.1" /db_xref="Phytozome:POPTR_0004s01020.1" /db_xref="TAIR:AT4G22030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H7H8" /translation="MASLQASNFVLSSSSKQIHAAISVPKLPSIRLSVPKVPTRVLSD ELNTRDGFINTIPVEKNVTRTTLVQESSSVSMATVQLYAILEAVADRVEMHSNIGEQR ENWNTLLLNSINMITLTAATMAGVTATGGAGVSILGLKLASTLLFSAATGMLVMMNKI QPSQLVEEQRNATRLFKQLQSQIQTLLAIGSPSKGDVKDAMEKVLALDKAYPLPLLGV MLEKFPESLEPAVWWPKNQSPKTNKSQETKHFNRKVDNNGWTEELETEMREIVEVIKR KDSEDYERLGNKALKINKVLAKSGPLLTGIAALGSAFMGSSNGPWAAIVAAVAGALAS AVNTFEHGGQVGMVFEMYRNNTGFFKLVQESIESNLDENDVEKRENGELLEMKVALQL GRSLSRLRDLAKKSSYSRIEGSPIDEFASKLF" gene complement(26416379..26418430) /locus_tag="TCM_030260" /note="dbxref CacaoGD:Thecc1EG030260" mRNA complement(26416379..26418430) /locus_tag="TCM_030260" /product="F-box family protein with a domain of Uncharacterized protein function" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s00960.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030259t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s01020.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS complement(26416582..26417859) /locus_tag="TCM_030260" /note="paralog of Thecc1EG030259t1" /codon_start=1 /product="F-box family protein with a domain of Uncharacterized protein function" /protein_id="EOY28747.1" /db_xref="Phytozome:POPTR_0004s01020.1" /db_xref="TAIR:AT4G22030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H7H8" /translation="MASLQASNLVLSSSSKQIHAAISVPKLPSIRLSVPKVPATKVLS EELNTREGFINTIPVEKNVTRTTLVQESSSVSKATVQLYALLEAVADRVEMHINIGEQ RENWNTLLLNSINMITLTAATMAGVTATGGAGVSILGLKLASTVLFSAATGMLVMMNK IQPSQLVEEQRNATRLFKQLQSQIQTLLAVGSPSKDDVKDAMEKVLALDKAYPLPLLG VMLEKFPKSLEPAVWWPKNQSPKTNKSQETKHFNRKVENNGWTEELETEMREIVEVIK RKDSEDYERLGNKVLKINKVLAKSGPLLTGIAALGSAFMGSSHGPWAAIVAAVAGALA SAVNTFEHGCQVGMVFEMYRNNAGFFKLVQESIESNLDENDEEKRENGELLEMKVALQ LGRSLSQLRDLAKKSSYSRVEGSPIDEFASKLF" mobile_element complement(26418544..26418658) /note="source:CACAO_PIF_E220_scaffold_7 2873 2980" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 26420172..26422352 /locus_tag="TCM_030261" /note="dbxref CacaoGD:Thecc1EG030261" mRNA join(26420172..26420523,26420598..26420720, 26421077..26421178,26421311..26421386,26421652..26421722, 26421812..26421897,26422002..26422322) /locus_tag="TCM_030261" /product="Peroxisomal membrane 22 kDa family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29842.m003563" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020939t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400009036" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02487t00001; inference alignment:Newbler:10:TSA:cgbaL_g14834t00001" mRNA join(26420309..26420523,26420622..26420720, 26421077..26421178,26421311..26421386,26421652..26421722, 26421812..26421897,26422002..26422352) /locus_tag="TCM_030261" /product="Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003563" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020939t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400009036" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14834t00001; inference alignment:Newbler:10:TSA:cgbaL_g14834t00001" CDS join(26420452..26420523,26420598..26420720, 26421077..26421178,26421311..26421386,26421652..26421722, 26421812..26421897,26422002..26422056) /locus_tag="TCM_030261" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG020939t1" /codon_start=1 /product="Peroxisomal membrane 22 kDa family protein isoform 2" /protein_id="EOY28749.1" /db_xref="Phytozome:PGSC0003DMP400009036" /db_xref="TAIR:AT4G04470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZS51" /translation="MGSVAKKGLQKYVSQLQSHPLRTKRNEIELLQAITAAVLSGISD TVSQKLSGIPKLQLRRLVLKMLFGFAYLGPFGHYTYILLDKIFKGKNDSKTVAKKVVL EQLTSSPCNNLLFMIYYGVVVEGRPWMHVKTRIKKEYPKVQLTAWTFWPAVGWINHQY VPLQFRVIFSSLIAFCWGIFLNLRARSMALPKSE" CDS join(26420452..26420523,26420622..26420720, 26421077..26421178,26421311..26421386,26421652..26421722, 26421812..26421897,26422002..26422056) /locus_tag="TCM_030261" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG020939t1" /codon_start=1 /product="Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein isoform 1" /protein_id="EOY28748.1" /db_xref="Phytozome:PGSC0003DMP400009036" /db_xref="TAIR:AT4G04470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZS51" /translation="MGSVAKKGLQKYVSQLQSHPLRTKAITAAVLSGISDTVSQKLSG IPKLQLRRLVLKMLFGFAYLGPFGHYTYILLDKIFKGKNDSKTVAKKVVLEQLTSSPC NNLLFMIYYGVVVEGRPWMHVKTRIKKEYPKVQLTAWTFWPAVGWINHQYVPLQFRVI FSSLIAFCWGIFLNLRARSMALPKSE" gene 26422714..26424613 /locus_tag="TCM_030262" /note="dbxref CacaoGD:Thecc1EG030262" mRNA 26422714..26424613 /locus_tag="TCM_030262" /product="F-box family protein with a domain of Uncharacterized protein function, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s00940.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030259t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s00940.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8689t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8687t1" CDS 26423149..26424414 /locus_tag="TCM_030262" /note="paralog of Thecc1EG030259t1" /codon_start=1 /product="F-box family protein with a domain of Uncharacterized protein function, putative" /protein_id="EOY28750.1" /db_xref="Phytozome:POPTR_0004s00940.1" /db_xref="TAIR:AT4G22030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N8C4" /translation="MAAVGVSSLLFSKSLPSSHYRRGNAPRVLMGPVSLPKHSGRGLV EDFERRNGAYTVDTTTLLERYSVSSPKTQHCSRHDTKSSDPQVIAKLYAVMEAVADRV EMHKNIGEQRDNWNHLLLTSINAMTLTAATMAGLAATNAAMAPLVALKLSSTVLYVAA TGLSVMMNKIQPSQLAEEQRNAARLFKQLHSQIQTTMSLGTHDINDVNEAIEKVLAID KAYPLPLLGAMLEKFPSKVEPARWWPQQKRKQRPGGNIEGNNGWNRKLEEEMSQVLGV LEKKDFAEYMRLGNKALKLNKVLAISGPLLALLGALGSSFVGSTPSPWPVMMGVIAGA MTTIVNSMEHGGQVGMVFEMYRSNAGFFKLIEESIMSNTDEREVERRENGEILEMKVA LQLGRSLSELKNLAASSREATEEFASKLF" mobile_element 26425361..26425422 /note="source:scaffold_4_CACTA_0511 14279 14337" /mobile_element_type="transposon:TIR/CACTA" gene 26426044..26427978 /locus_tag="TCM_030263" /note="dbxref CacaoGD:Thecc1EG030263" mRNA join(26426044..26426816,26427560..26427978) /locus_tag="TCM_030263" /product="B-cell receptor-associated 31-like" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012687001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011916t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012687001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17025t1" CDS join(26426534..26426816,26427560..26427942) /locus_tag="TCM_030263" /note="paralog of Thecc1EG011916t1" /codon_start=1 /product="B-cell receptor-associated 31-like" /protein_id="EOY28751.1" /db_xref="Phytozome:GSVIVT01012687001" /db_xref="TAIR:AT1G11905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L702" /translation="MIQLLFLVVFSEMAVIVVLSFKTPLRKLVIMGLDRVKRGRGPVM VKTVAGTVSVVMMSSVYSMMKIQKRWIDDGAANPTDQVLMAKHLLEATLMGASLFLAL MIDRLHHYIRELRLRRKNMEAAKKQGRGFEDVKPGGSNEVKALEEEVTALREKFKQLE SDLETKTKEMNAAEANAVALRKQSEGFLLEYDRLLEENQNLRNQLQSLDQRLSRSGSK KNT" gene complement(26427987..26429966) /locus_tag="TCM_030264" /note="dbxref CacaoGD:Thecc1EG030264" mRNA complement(join(26427987..26428727,26428966..26429966)) /locus_tag="TCM_030264" /product="SLAC1, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G62280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034146t1" /inference="similar to AA sequence:TAIR:AT1G62280.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc319t1" CDS complement(join(26428452..26428727,26428966..26429859)) /locus_tag="TCM_030264" /note="paralog of Thecc1EG034146t1" /codon_start=1 /product="SLAC1, putative" /protein_id="EOY28752.1" /db_xref="TAIR:AT1G62280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LD83" /translation="MSSFMVTLMGEIECKPPIQVIIEASIITTPEESRGPSINNFAEP SPSSILTRLHAGYFRISLSFGGQALLWKILTEPNGVPQDAWHVFRKLPSTVCLLLWCL AVLTQISLSSVYVLRCFFHFHLVKAEFSHHIGVNYLYAPWISWLILLQSAPIVFPNSI YYLVLCWIFITPLAMLDIKIYGQWFTTEKRFLSIMANPTSQISVIGNLVAARAAARMG WKESAVCMWSLGMVHYLVLFVTLYQRLSGGNCFPLILRPTFFLFFAAPSMASLAWNSI TGAFDTTSKMLFFLSLFLFMSLACRPSLFKKSMRKFNVAWWAYSFPLTFLALAAAEYA QEVKGHVAAVLMLLLSVLSLLVFLGLMLLTAANANRLLGETDPMESFSSNLKSRT" gene complement(26431001..26434306) /locus_tag="TCM_030265" /note="dbxref CacaoGD:Thecc1EG030265" mRNA complement(join(26431001..26431279,26434163..26434306)) /locus_tag="TCM_030265" /product="Uncharacterized protein" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete" CDS complement(26431088..26431273) /locus_tag="TCM_030265" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28753.1" /translation="MTPIFTKCDKRKKKKNGGKRPEENVSAFQELIRGFFQTAPPWIM TSNVTNQGRDEILLHMA" gene complement(26437487..26441699) /locus_tag="TCM_030266" /note="dbxref CacaoGD:Thecc1EG030266" mRNA complement(join(26437487..26437861,26439661..26441699)) /locus_tag="TCM_030266" /product="Mitogen-activated protein kinase kinase kinase 15, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s00910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030838t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s00910.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc787t1" mobile_element 26438294..26438391 /note="source:CACAO_M_S_E89247_F225_scaffold_8 4204 4298" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 26440056..26440152 /note="source:scaffold_4_CACTA_0511 7084 7185" /mobile_element_type="transposon:TIR/CACTA" CDS complement(26440216..26441664) /locus_tag="TCM_030266" /note="paralog of Thecc1EG030838t1" /codon_start=1 /product="Mitogen-activated protein kinase kinase kinase 15, putative" /protein_id="EOY28754.1" /db_xref="Phytozome:POPTR_0004s00910.1" /db_xref="TAIR:AT5G55090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N8D0" /translation="MEWTRGRTIGRGSTATVSIATADQSGDVFAVKSCELSQSESLRR EQRILSTLSCPRVLACKGCDISSENGMLVYNLLLEYAPGGTITDAIQKQGGRLDEAMV RSYTRGILQGLEFLHSSGIVHCDIKGRNVLVTDDGVKIADLGCARRADVVPGAAWSVA GTPVYMAPEVARGEQQGFPADVWALGCTVIEMATGRAPWPDVGDPVSALYRIGFSRDM PEIPSDLSKQAKDFLSKCLRRDPVERWTATQLLAHDFVKEMKAPPIKGTDGSELSTPT TVLNLQLWDSMEELETIHIPSRKNRLSKIIMERIQQLGETNLVSSSEMPVWEWDENWV TVRSNGSGLDLETLSNRQDEDDKLLHADEPASSCGGDMTRVSKDYDLLVHHYPTKISR KNTSRNEISCHRTYCNKYSAYILCRKLNSLNKTSSVFCNFNCWRLFIFKMNFCADKYS LEWCILYFETDLDGSKLHNQCHCIGFVVLCLT" gene complement(26443444..26448408) /locus_tag="TCM_030267" /note="dbxref CacaoGD:Thecc1EG030267" mRNA complement(join(26443444..26443563,26443666..26443754, 26444009..26444128,26444215..26444371,26444502..26444566, 26444723..26444836,26445139..26445203,26445342..26445381, 26445483..26445651,26445740..26445852,26445946..26446040, 26446479..26446539,26446659..26447036,26447697..26447713, 26447826..26448408)) /locus_tag="TCM_030267" /product="Saposin-like aspartyl protease family protein" /inference="alignment:exonerate-protein:2:frave:gene19477" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030837t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400028764" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04810t00001" CDS complement(join(26443479..26443563,26443666..26443754, 26444009..26444128,26444215..26444371,26444502..26444566, 26444723..26444836,26445139..26445203,26445342..26445381, 26445483..26445651,26445740..26445852,26445946..26446040, 26446479..26446539,26446659..26447030)) /locus_tag="TCM_030267" /note="paralog of Thecc1EG030837t1" /codon_start=1 /product="Saposin-like aspartyl protease family protein" /protein_id="EOY28755.1" /db_xref="Phytozome:PGSC0003DMP400028764" /db_xref="TAIR:AT1G62290.2" /translation="MGTTIKVVVLSLFISSLLFSVVSSVSNDGLVRIGLKKMKLDPNN RLAARLDSKDGEALRASIKKYHFRNNLGDSEETDIVALKNYMDAQYYGEIGIGTPTQK FTVIFDTGSSNLWVPSTKCYFSVACYFHEKYKASDSSTYKKDGKPASIQYGTGAISGF FSYDHVQVGDLVVKDQEFIEATKEPGLTFMVAKFDGILGLGFKEISVGDAVPVWYNMI KQGLIKEPVFSFWLNRNVDEEAGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFDMGDV LIADKPTGYCAGSCAAIADSGTSLLAGPSTVITMINHAIGATGVVSQECKAVVQQYGQ TIIDLLIAEAQPQKICSQIGLCTFNGAHGVSTGIESVVDESNGKSSGVLRDAMCPACE MAVVWMQNQVRQNQTQDRILSYVNELCDRVPNPMGESAVDCGSLSSMPTISFTIGGKV FDLTPEEYILKVGEGSDAQCISGFTALDIPPPRGPLWILGDIFMGRYHTVFDFGKLRV GFAEAA" mobile_element complement(26450861..26450928) /note="source:CACAO_M_E24018_F98_scaffold_4 2021 2076" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26454767..26454796 /note="source:CACAO_Again_on_E67_scaffold_3 749 778" /mobile_element_type="transposon:TIR/hAT" gene 26458212..26461307 /locus_tag="TCM_030268" /note="dbxref CacaoGD:Thecc1EG030268" mRNA join(26458212..26458765,26458859..26458957, 26459073..26459237,26459324..26459710,26459803..26459916, 26460012..26461307) /locus_tag="TCM_030268" /product="WRKY family transcription factor" /inference="alignment:exonerate- protein:2:ricco:29842.m003555" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002087t1" /inference="similar to AA sequence:ricco:29842.m003555" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04525t00001" CDS join(26458424..26458765,26458859..26458957, 26459073..26459237,26459324..26459710,26459803..26459916, 26460012..26460686) /locus_tag="TCM_030268" /note="dbxref ricco:29842.m003555; paralog of Thecc1EG002087t1" /codon_start=1 /product="WRKY family transcription factor" /protein_id="EOY28756.1" /db_xref="TAIR:AT1G62300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SFR9" /translation="MDKGWGLTLDSDPGTKFFPNKTNSGGPFFRLKQQRDMFQFPVSL AGFREDHQGTSSSSSPSGQEKRPVAVDEVDFFSDKKTRVVVGGDDKTGTVSVKKETSH GEAAPGSDLDVNTGLHLLTANAGSDQSTVDDGVSSDMEDKRAKNELAQLHVELQRMNA ENQKLRDMLSHVSNNYSALQMHLVTLMQQQRNQGTESTQEHEVRQGKSEEKKHDVIVP RQFMDLGPSGTAEADEMSHSSSEERTQSGSPPSNAEIASKNYVKSKNEISQFDQETSS FRDGKRVGREESPESEGWGPNKAQKLNPAKPVDQSTEATMRKARVSVRARSEAPMITD GCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPL PPAAMAMASTTAAAASMLLSGSMPSADGIMNQNLLARAILPCSSSVATISASAPFPTV TLDLTHSPNPLQFQRPPTQFQVPFPGQPQNFASVAAPQLPQVIGQALYNQSKFSGLQL SQDMGSAQLGHQVPHPQLQQPQQPTLADTVSAATAAITADPSFTAALAAAITSIIGGG AHPNSSSNTSNNNNNNSNANTTTTSRQ" gene complement(26462536..26463227) /locus_tag="TCM_030269" /note="dbxref CacaoGD:Thecc1EG030269" mRNA complement(26462536..26463227) /locus_tag="TCM_030269" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage" CDS complement(26462918..26463220) /locus_tag="TCM_030269" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28757.1" /translation="MMIDVHVNVIKADCRMFDSSITLFLKDPGFQHYSDYFQTSTKII YNQDPAVLVASEPTSLSCPRLNQERNWKVPAYWAKALLHGQDPDQQLGLRTLLILK" gene 26463353..26465157 /locus_tag="TCM_030270" /note="dbxref CacaoGD:Thecc1EG030270" mRNA join(26463353..26464015,26464097..26464309, 26464528..26464569,26464728..26465157) /locus_tag="TCM_030270" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012680001" /inference="similar to AA sequence:Phytozome:GSVIVT01012680001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1016t2" CDS join(26463454..26464015,26464097..26464309, 26464528..26464569,26464728..26464855) /locus_tag="TCM_030270" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28758.1" /db_xref="Phytozome:GSVIVT01012680001" /db_xref="TAIR:AT1G11915.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N8D3" /translation="MGSLIFIYKPTVSQHKISSFLWLWSSIIPFLFPFLSLIEAQASL CRTTCGDIPINYPFGIDDGCGSPYYRHMLACSDTGKLELRTPSGRYPLRSISYSDPHV LVTDPFMWNCQDGDNFRPTRPFSLDTSTHFSLSSQNDYLFFNCSEDYVIVEPKPIFCE RFPDRCDSSCDSASYLCRHLPECASALGVYWRTVGTSADTPYNQVPEYGIRVDFVVPV TTHCLQCQDPSKGAGTCGFDTQTQNFLCLCKEGNVTSYCKDHKISGHGRAGVIAGTVS AVSAAGAIGIGAGIWYLKKVRAKAPVTCGVQSNENRLF" gene complement(26465074..26467338) /locus_tag="TCM_030271" /note="dbxref CacaoGD:Thecc1EG030271" mRNA complement(join(26465074..26465669,26465757..26465860, 26465941..26466891,26467209..26467338)) /locus_tag="TCM_030271" /product="Root hair specific 14" /inference="alignment:exonerate- protein:2:ricco:29842.m003553" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014530t1" /inference="similar to AA sequence:ricco:29842.m003553" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8721t1" CDS complement(join(26465315..26465669,26465757..26465860, 26465941..26466699)) /locus_tag="TCM_030271" /note="dbxref ricco:29842.m003553; paralog of Thecc1EG014530t1" /codon_start=1 /product="Root hair specific 14" /protein_id="EOY28759.1" /db_xref="TAIR:AT4G22080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65456" /translation="MSQIAQPNSAMAASLTSFVLFSFLLSNFALTSQAAYSLEGYTSK PLADYVPSVAPKKVMNVIDSCWRTRSNWATNRRALADCAVGFGKAAIGGKYGAIYVVT NPYDNPINPAPGTLRYGVIQTSPLWIIFARDMVITLKNELIVNSFKTIDGRGAKVEIA YGPCITVQGVTNVIIHGISIYDCKPGKAGMVRSSPTHVGKRGGCDGDAISIFASSNIW VDHCYLARSADGLIDVIRASTAVTISNNYFTQHDKVMLLGHSDKFTADKVMKVTVAFN RFGEGLIERMPRVRIGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFIAPDNSASKE VTKREASNWRNWTWQSSKDVFKNGAYFVPSGYGSCAPRYTRAQSFKAAPGYMVPALTS DAGPLRCLVGKAC" gene complement(26467381..26468117) /locus_tag="TCM_030272" /note="dbxref CacaoGD:Thecc1EG030272" mRNA complement(26467381..26468117) /locus_tag="TCM_030272" /product="Stigma-specific Stig1 family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene07567" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030273t1" /inference="similar to AA sequence:ricco:29842.m003551" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(26467604..26468062) /locus_tag="TCM_030272" /note="dbxref ricco:29842.m003551; paralog of Thecc1EG030273t1" /codon_start=1 /product="Stigma-specific Stig1 family protein, putative" /protein_id="EOY28760.1" /db_xref="TAIR:AT1G11925.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N8D7" /translation="MKSLKLFFMLAMVMALGAIALSASTPPSKEEPFLNNGDDKNATE TSDRVPTSIRGAGRFLAQSSSRAALTCDKNPKVCRTKGSQGPSCCSKKCVDLKTDRFN CGKCGKKCKYSKICCQGKCVNPLSNSKHCGGCNNSCGNGNACLYGMCSYA" gene complement(26469186..26470298) /locus_tag="TCM_030273" /note="dbxref CacaoGD:Thecc1EG030273" mRNA complement(26469186..26470298) /locus_tag="TCM_030273" /product="Stigma-specific Stig1 family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s00850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030276t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s00850.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8729t1" CDS complement(26469516..26470163) /locus_tag="TCM_030273" /note="paralog of Thecc1EG030276t1" /codon_start=1 /product="Stigma-specific Stig1 family protein, putative" /protein_id="EOY28761.1" /db_xref="Phytozome:POPTR_0004s00850.1" /db_xref="TAIR:AT1G11925.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N8D7" /translation="MHAVELDHPTNDSIDENEPMQLVYVFYMSSIQKFFSINTFRSLH SCSTTKSYRSQSKQTMKLVKVFLMLALLMASAISLSAAAPSEEEPFVDNDDDASEVAD DLLPSADGQEQPTSLRGASRFLAQKPRAVMTCNKYPRVCRVAGSPGPDCCKKKCVNVK TDRLNCGMCGKKCKYSEICCKGKCVNPMSHKRHCGGCNNQCSKGSKCLYGMCSYA" mobile_element complement(26471977..26472097) /note="source:INTACT639F_F363_scaffold_5-int 7182 7314" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(26472182..26472471) /note="source:CACAO_M_E4063_F12_scaffold_2 6420 6744" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26472217..26472503 /note="source:INTACT464_F222_scaffold_9-int 663 997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26472471..26473866) /note="source:INTACT639F_F363_scaffold_5-int 4806 6163" /mobile_element_type="retrotransposon:LTR/Copia" gene 26474783..26477834 /locus_tag="TCM_030275" /note="dbxref CacaoGD:Thecc1EG030275" mRNA join(26474783..26474943,26476402..26477196, 26477280..26477834) /locus_tag="TCM_030275" /product="F-box/RNI/FBD-like domains-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030277t1" /inference="similar to AA sequence:TAIR:AT5G22730.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS join(26476402..26477196,26477280..26477702) /locus_tag="TCM_030275" /note="paralog of Thecc1EG030277t1" /codon_start=1 /product="F-box/RNI/FBD-like domains-containing protein" /protein_id="EOY28762.1" /db_xref="TAIR:AT5G22730.1" /translation="MERGCDRISNLPDPLLEHILTFLPTKYAIRTGVLSKRWKDLWVS QPYISLSHDGLIGRIAEFKNLSVRDRTVKVSKYKNFFNKVLLQPQAKVKKLQISAPER LEALEFNRWFPAIMKEGLEELDLDFAIFCDAPVSILAVCNTLVTLKLDFGALSAHKFP KSFYFPTLKTMQLCGFVLANNFTHQLLQSKNLESLILPYFMFDLMSRDSVPNCSDQKQ ALPNLNYAQMNCPYTFRGEDSTRSFLKNMINVVSNAKDLNLSLSIMEYLAHDDLPEFN NLKHIKLHLQSFHVRAMCYILQKAPNLEFLHIEFVRPYGNEPLMLEELRSCCSRANLK VIQMTNFILEEDLVLELVQLIFESAGSLEGIVIELVEQPKMNNFLRCQKLLKLPRLSE CSILHLKWDSNYS" gene complement(26478074..26478728) /locus_tag="TCM_030276" /note="dbxref CacaoGD:Thecc1EG030276" mRNA complement(26478074..26478728) /locus_tag="TCM_030276" /product="Stigma-specific Stig1 family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s00850.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030273t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s00850.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8740t1" CDS complement(26478221..26478691) /locus_tag="TCM_030276" /note="paralog of Thecc1EG030273t1" /codon_start=1 /product="Stigma-specific Stig1 family protein, putative" /protein_id="EOY28763.1" /db_xref="Phytozome:POPTR_0004s00850.1" /db_xref="TAIR:AT1G11925.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N8D7" /translation="MKLVKVFLMLVLLMALAITLSAAAPSEEEPLVDNDDDASEVADD LLPSADGQEQRTSLRGASRFLAQKPRAVMTCNKYPRVCRVAGSPGPDCCKKKCVNVKT DRLNCGMCGKKCKYSEICCKGKCVNPMSHKRHCGGCNNQCSKGSKCLYGMCSYA" mobile_element complement(26479579..26479690) /note="source:scaffold_9_CACTA_0936 309 419" /mobile_element_type="transposon:TIR/CACTA" gene 26481842..26483672 /locus_tag="TCM_030277" /note="dbxref CacaoGD:Thecc1EG030277" mRNA join(26481842..26482968,26483062..26483672) /locus_tag="TCM_030277" /product="F-box/RNI/FBD-like domains-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030275t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(26482117..26482968,26483062..26483541) /locus_tag="TCM_030277" /note="paralog of Thecc1EG030275t1" /codon_start=1 /product="F-box/RNI/FBD-like domains-containing protein" /protein_id="EOY28764.1" /translation="MQIMSDQMERRRDRISNLPDSLLEYILTFLSTKYAVRTGVLSKR WKDLWISHPYISLNDDGLIDRMAESKNLSISKWKFFFLKNEIRNRRIKVTEFMNFLDK VLLHPQARVKKLQLSSQERLETPTFSRWFQAVLKEGLEELNLNFGIFCDAPLSSLTTS NTLVTLKLDFGALSGHEFPISFCFPNLKTMHLNGFLLANNFPHQLLQCRNLESLILRY FMFNLMLHDPVLDCFEQKEALPNLLNAQMDCSYVFRGKDSARSFLKNLINVMSNTKNL NLSLSIMEYLALDRTFPDDMPKFNNLKHIKLYLQSFHVGAMSYILQKAPNLESLHIEF DRPYGSVHDTGMLEQLRFCCSTANLKVIRMTNFILEDPVLELVQLIFESVGSLEDIVI ELVERPAINNFLQLQKLSKLSRLSKDSVLHVKWDFGYPLRLLLLPSSMVVN" mobile_element complement(26483696..26483772) /note="source:CACAO_M_E43766_F2_scaffold_5 4328 4405" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 26486682..26488783 /locus_tag="TCM_030278" /note="dbxref CacaoGD:Thecc1EG030278" mRNA join(26486682..26488002,26488085..26488783) /locus_tag="TCM_030278" /product="F-box/RNI/FBD-like domains-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030277t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(26487175..26488002,26488085..26488558) /locus_tag="TCM_030278" /note="paralog of Thecc1EG030277t1" /codon_start=1 /product="F-box/RNI/FBD-like domains-containing protein" /protein_id="EOY28765.1" /translation="MNRLQANILSYSFLSSFMLDQMEGERDRISDLPDSLLEYILTFL PTKYAVRTGVLSKRWKDLWVSHPYVSLRDDGINNQTVKVSKFMNFLNKILLHPQAKVK KIQLSSRERLESPEFIRWFQAVMMKDDLEELDLGFRKIYHTPQSNLTVCNTLVILKLD FGAFSGNKFPKSFCFPNLKTMHLNGFLLAYNFPNQLLQCRNLESLIIRNYILDLMSHG LVLNGSDDQKEVLSNISNAQIDSCYGFHGDVSDRSFLKNMINAVSNAKDLDLSLSIME YLDRVFPNDMLEFNNLKHIKLYLRSSHVGALGYILQKAPNLESLHIESDGPYGSAHDA LMLEQLRSSCSSANLKVIRMTNFILEDPVLELVQLIFDSAGSLEDIVIELDARLEMNN FLQCEKLLKLPRLSEDSVLHLKWEFGYSHHYFGHSHSYYHP" gene complement(26489363..26490048) /locus_tag="TCM_030279" /note="dbxref CacaoGD:Thecc1EG030279" mRNA complement(26489363..26490048) /locus_tag="TCM_030279" /product="Stigma-specific Stig1 family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s00830.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030276t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s00830.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8738t1" CDS complement(26489513..26489986) /locus_tag="TCM_030279" /note="paralog of Thecc1EG030276t1" /codon_start=1 /product="Stigma-specific Stig1 family protein, putative" /protein_id="EOY28766.1" /db_xref="Phytozome:POPTR_0004s00830.1" /db_xref="TAIR:AT1G11925.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N8D9" /translation="MKSSKIMFTWLGLGIVALAITLSAVQTVAQLHSTTNEENPNDHF PLPKTEEPSYHQGRIGRFLADGPRAPARMTCDKYPTVCRARGSPGSDCCNKQCVNVMT DKGNCGKCGKRCSYSEMCCQGRCVNPSVDEYHCGRCNNACKKGSSCLYGLCSYAN" gene complement(26491052..26492448) /locus_tag="TCM_030280" /note="dbxref CacaoGD:Thecc1EG030280" mRNA complement(join(26491052..26491803,26492213..26492448)) /locus_tag="TCM_030280" /product="Stigma-specific Stig1 family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s03050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030273t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s00820.1" /note="quality class is strong, express is none, homology is ortholog strong, intron is none, protein is complete" CDS complement(join(26491442..26491803,26492213..26492231)) /locus_tag="TCM_030280" /note="paralog of Thecc1EG030273t1" /codon_start=1 /product="Stigma-specific Stig1 family protein" /protein_id="EOY28767.1" /db_xref="Phytozome:POPTR_0004s00820.1" /db_xref="TAIR:AT1G11925.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1X9" /translation="MFDLIIATIAILAATSLADFDEKQTSLRGLSRFLAQQNLKANVT CDNFPRICRLTNSPGPDCCKKRCVNVKTDRMNCGMCGYKCKYGEICCKGQCVNASFDK RNCGGCNKRCKKGEFCVYGMCNYA" gene 26492573..26494072 /locus_tag="TCM_030281" /note="dbxref CacaoGD:Thecc1EG030281" mRNA join(26492573..26493050,26493142..26493396, 26493489..26494072) /locus_tag="TCM_030281" /product="Auxin-responsive family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29842.m003549" /inference="similar to AA sequence:ricco:29842.m003549" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8742t1" CDS join(26492790..26493050,26493142..26493396, 26493489..26493782) /locus_tag="TCM_030281" /note="dbxref ricco:29842.m003549" /codon_start=1 /product="Auxin-responsive family protein, putative" /protein_id="EOY28768.1" /db_xref="TAIR:AT5G35735.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N8E1" /translation="MTFYCLVFLSLIFPLPSISAQVSVCNEELSFATLVGKNQEWQVD RTLSDMEHQIQAASVQSTETGATAGLRPWKGQRTLRHRHHLKNVHGILNILGWGFLLP TGAIIARNFRKFPLKCNEWYNLYVLCQSSGYIVGTVGWGIGLWLGNSSKQYTLKTHRI LGIIIFTFATLQMSALWLQPKAEDECRKCWEIYHHLLGYALIVLSIANIFQGISNVKS HAAEKWRWVYVGMLIVLASTAVALEIYRWIKSKSPQQMAFDENEIYASEQI" gene 26494243..26496449 /locus_tag="TCM_030282" /note="dbxref CacaoGD:Thecc1EG030282" mRNA join(26494243..26494655,26494797..26494863, 26495131..26495177,26495347..26495434,26495722..26495855, 26495942..26496040,26496136..26496449) /locus_tag="TCM_030282" /product="Pyridoxal phosphate-dependent enzyme" /inference="alignment:exonerate-protein:2:frave:gene19486" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030828t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s00800.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06901t00001" CDS join(26494365..26494655,26494797..26494863, 26495131..26495177,26495347..26495434,26495722..26495855, 26495942..26496040,26496136..26496210) /locus_tag="TCM_030282" /note="paralog of Thecc1EG030828t1" /codon_start=1 /product="Pyridoxal phosphate-dependent enzyme" /protein_id="EOY28769.1" /db_xref="Phytozome:POPTR_0004s00800.1" /db_xref="TAIR:AT1G11930.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q944L8" /translation="MNNPEECEANDLQQRKQQEPEMAASSAAMDGVAAAAIRSVLQRV HQAAERSGRESQRIRVVAVSKTKPVSILRQVYDAGHRCFGENYVQELVEKAPQLPGDT EWHFVGNLQSNKVKPLIAGVPNLAMVETVDDEKIANHLNRVVGSFERKPLKVLVQVNT SGEESKSGVEPSGCVELVKHVSLNCPNLQFCGLMTIGMLDYTSTPENFMTLANCRSEV CKALGIPEEQCELSMGMSGDFEQAIEMGSTNVRIGSTIFGAREYPKKT" gene 26496525..26502924 /locus_tag="TCM_030283" /note="dbxref CacaoGD:Thecc1EG030283" mRNA join(26496525..26498862,26498974..26499122, 26499549..26499758,26500938..26501176,26501365..26501722, 26501814..26502118,26502578..26502924) /locus_tag="TCM_030283" /product="Tetratricopeptide repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012670001" /inference="similar to AA sequence:Phytozome:GSVIVT01012670001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10147t00001" CDS join(26496632..26498862,26498974..26499122, 26499549..26499758,26500938..26501176,26501365..26501722, 26501814..26502118,26502578..26502838) /locus_tag="TCM_030283" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein" /protein_id="EOY28770.1" /db_xref="Phytozome:GSVIVT01012670001" /db_xref="TAIR:AT4G04370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XE98" /translation="MNKIRSVPTSSTKSFNSIINNLSSQGSYHEVLVTYTTMLNSSTP DSYTFPSLLKACTSLNLFSIGLSVHQQVILRGFSSDSYTASSLINFYSKFGHTKHARK VFDKTLNRDVVPWTAIIGCYGRGGDVGNAFSMLNEMRYNGVEPSPVTFLSLLSGALEV AQVQALHGCAVLYGFESDIAVGNSLLNAYSKCGSIGEARGLFELMDQKDKISWNSLIS GYAQLGNVEEILQLLYAMKIENMGPDQQTFGSLVTAVAAQSTLDIGRVVHGQILRSGF DSDAHIETALMVMYLKCGTTDAAYQIFEGVSQKDVVLWTAMISGLVQNNFADKALTVF YQMMKSRVEPSTATLTSALAACAQLGSFDLGTSIHAYILRHGLTIDIPVQNSLVTMYA KCGHLEQSCAVFERINKRDLVSWNAIISGCAQNDHLSKALFFFNKMRLTLQKPDSLTA VTLLQASASTGALHQGKWFHNFVIRSCLRPCILVDTALVDMYCKCGDLDAAVKCFRVM SQQDLISWSTIIAGYGSHGKGEMALNMYFEFLHSGMEPNKVIFLTVLSACSHNGLVDE GLSIFQSMARDFGIQPELEHRACIVDLLCRAGRVEEAYNFYKGNFSEPAVDVLSILLD ACRANDNLELGDVIAQDVIRLRPASAANYVQIAHCYASMSRWNSVGEAWSQMRSLGLR KLPGWSFIDLHGTVTSFLSGQNAHPKHEEIVATLKTLSWEMSEVCMNFKMHQILDIFL ETQSILNASECIHLVKTEQQQDSRTQLFNFREQGENREMKMTLEHNKSGDNGKAMRLG VCSGQLQPMQPTATVDFCNRRLLFATVGHANWPRRLIGFALGGTPSLPNRSNNWPVIV LVFMDGGKTGGGKERMRNTCFMLLLGTALGVGILVGVCKAQLAYDYYKYSCPNVENIA RKVMLGVVLTDPTAPAAFLRLLFHDCQVQGCDASILLDSGALKGNSEVVSGRNFGIRK LETIEYIKYILEAVCPGQVSCADIIALAAKESVSLSGGPNIQIPLGRKDSTTCSRQAA DTHLPSPDITVDQLLNIFMSKGLNLEESVAIMGGHTVGGGHCINIAGRLYGRHPDDPM NPGFEGLLRLYCPTKTPLANLTIVPNDKTPLIFDNLYFRDVLMGKGLFTVDSSISRDP RTAPIVRQFAANVNHFFQLFCVYDSVVYQQNFSRHSACHPTFILEVDELRVRVVQEIV IADHEELPNNAEASKGPTTPSLKRRMAAPRENFLANKKQGTDVELV" mobile_element complement(26497860..26497905) /note="source:CACAO_Again_on_E213_scaffold_9 476 521" /mobile_element_type="transposon:TIR/hAT" gene complement(26502421..26506321) /locus_tag="TCM_030284" /note="dbxref CacaoGD:Thecc1EG030284" mRNA complement(join(26502421..26502885,26503215..26503361, 26503565..26503624,26503891..26503932,26504322..26504402, 26504764..26504845,26505015..26505086,26505199..26505299, 26505394..26505510,26505595..26506002)) /locus_tag="TCM_030284" /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29842.m003546.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002123t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s01410.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06860t00001; inference alignment:Newbler:10:TSA:cgbaB_g06860t00001" CDS complement(join(26502706..26502885,26503215..26503361, 26503565..26503624,26503891..26503932,26504322..26504402, 26504764..26504845,26505015..26505086,26505199..26505299, 26505394..26505510,26505595..26505867)) /locus_tag="TCM_030284" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002123t1" /codon_start=1 /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein isoform 2" /protein_id="EOY28772.1" /db_xref="Phytozome:POPTR_0011s01410.1" /db_xref="TAIR:AT1G11940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ98" /translation="MMKKLPAPVPARQVLWLGWKLVILLSVALCFVALLRLHFSPDLS SPNSLSRPARVRSRISGGTFDGIPKIAFLFLARFNLPLDFLWGSFFENADVANFSIYI HSAPGFVFDESTTRSLFFYDRQLTNSIQVIWGESSMIEAERLLLESALEDPANQRFVL LSDSCVPLYNFSYIYRYLMSSSRSFVDSFLDAKDGRYHPKMSPVIPKEKWRKGSQWIS LLRSHAEVIVDDEVVLPVFKKFCKRRPPMDTGKGKLNIKLQKQHNCIPDEHYVQTLFA MSELEGELERRTLTYTLWNQSAAKMDNKAWHPVMFNYADASPKKIKEIKDINHVYYES EFRTEWCQTNSTSVPCFLFARKFSRGAAMRLLSEGVVGPFEASALLGNSS" mRNA complement(join(26503196..26503361,26503565..26503624, 26503887..26503932,26504322..26504402,26504764..26504845, 26505015..26505089,26505199..26505299,26505394..26505510, 26505595..26505875,26505983..26506128)) /locus_tag="TCM_030284" /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29842.m003546.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002123t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012669001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8754t4; inference alignment:Newbler:10:TSA:cgbaB_g06860t00001" mRNA complement(join(26503264..26503480,26503565..26503624, 26503891..26503932,26504322..26504402,26504764..26504845, 26505015..26505086,26505199..26505299,26505394..26505510, 26505595..26506321)) /locus_tag="TCM_030284" /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003546.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002123t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012669001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06860t00001" mRNA complement(join(26503287..26503361,26503565..26503932, 26504322..26504402,26504764..26504845,26505015..26505086, 26505199..26505299,26505394..26505510,26505595..26505895, 26505983..26506128)) /locus_tag="TCM_030284" /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29842.m003546.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002123t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012669001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc979t8; inference alignment:Newbler:10:TSA:cgbaB_g06860t00001" CDS complement(join(26503460..26503480,26503565..26503624, 26503891..26503932,26504322..26504402,26504764..26504845, 26505015..26505086,26505199..26505299,26505394..26505510, 26505595..26505867)) /locus_tag="TCM_030284" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002123t1" /codon_start=1 /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein isoform 1" /protein_id="EOY28771.1" /db_xref="Phytozome:GSVIVT01012669001" /db_xref="TAIR:AT1G11940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ98" /translation="MMKKLPAPVPARQVLWLGWKLVILLSVALCFVALLRLHFSPDLS SPNSLSRPARVRSRISGGTFDGIPKIAFLFLARFNLPLDFLWGSFFENADVANFSIYI HSAPGFVFDESTTRSLFFYDRQLTNSIQVIWGESSMIEAERLLLESALEDPANQRFVL LSDSCVPLYNFSYIYRYLMSSSRSFVDSFLDAKDGRYHPKMSPVIPKEKWRKGSQWIS LLRSHAEVIVDDEVVLPVFKKFCKRRPPMDTGKGKLNIKLQKQHNCIPDEHYVQTLFA SNSVVE" CDS complement(join(26503590..26503624,26503887..26503932, 26504322..26504402,26504764..26504845,26505015..26505089, 26505199..26505299,26505394..26505510,26505595..26505867)) /locus_tag="TCM_030284" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG002123t1" /codon_start=1 /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein isoform 3" /protein_id="EOY28773.1" /db_xref="Phytozome:GSVIVT01012669001" /db_xref="TAIR:AT1G11940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ98" /translation="MMKKLPAPVPARQVLWLGWKLVILLSVALCFVALLRLHFSPDLS SPNSLSRPARVRSRISGGTFDGIPKIAFLFLARFNLPLDFLWGSFFENADVANFSIYI HSAPGFVFDESTTRSLFFYDRQLTNSIQVIWGESSMIEAERLLLESALEDPANQRFVL LSDSSCVPLYNFSYIYRYLMSSSRSFVDSFLDAKDGRYHPKMSPVIPKEKWRKGSQWI SLLRSHAEVIVDDEVVLPVFKKFCKRRPPMDTGKGKLNIVKTSKAAQLYPR" mRNA complement(join(<26503599..26503624,26503887..26503932, 26504322..26504402,26504764..26504845,26505015..26505086, 26505199..26505299,26505394..26505510,26505595..26505895, 26505983..26506128)) /locus_tag="TCM_030284" /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:29842.m003546.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002123t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012669001" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc979t10; inference alignment:Newbler:10:TSA:cgbaB_g06860t00001" mRNA complement(join(<26503599..26503624,26503887..26503932, 26504322..26504402,26504764..26504845,26505015..26505086, 26505199..26505299,26505394..26505510,26505595..26506128)) /locus_tag="TCM_030284" /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:29842.m003546.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002123t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012669001" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc979t5; alternateUTRof:Thecc1EG030284t5; inference alignment:Newbler:10:TSA:cgbaB_g06860t00001" CDS complement(join(<26503599..26503624,26503887..26503932, 26504322..26504402,26504764..26504845,26505015..26505086, 26505199..26505299,26505394..26505510,26505595..26505867)) /locus_tag="TCM_030284" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG002123t1" /codon_start=1 /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein isoform 5" /protein_id="EOY28775.1" /db_xref="Phytozome:GSVIVT01012669001" /db_xref="TAIR:AT1G11940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ98" /translation="MMKKLPAPVPARQVLWLGWKLVILLSVALCFVALLRLHFSPDLS SPNSLSRPARVRSRISGGTFDGIPKIAFLFLARFNLPLDFLWGSFFENADVANFSIYI HSAPGFVFDESTTRSLFFYDRQLTNSIQVIWGESSMIEAERLLLESALEDPANQRFVL LSDSCVPLYNFSYIYRYLMSSSRSFVDSFLDAKDGRYHPKMSPVIPKEKWRKGSQWIS LLRSHAEVIVDDEVVLPVFKKFCKRRPPMDTGKGKLNIVKTSKAAQLY" CDS complement(join(<26503599..26503624,26503887..26503932, 26504322..26504402,26504764..26504845,26505015..26505086, 26505199..26505299,26505394..26505510,26505595..26505867)) /locus_tag="TCM_030284" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG002123t1" /codon_start=1 /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein isoform 5" /protein_id="EOY28776.1" /db_xref="Phytozome:GSVIVT01012669001" /db_xref="TAIR:AT1G11940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ98" /translation="MMKKLPAPVPARQVLWLGWKLVILLSVALCFVALLRLHFSPDLS SPNSLSRPARVRSRISGGTFDGIPKIAFLFLARFNLPLDFLWGSFFENADVANFSIYI HSAPGFVFDESTTRSLFFYDRQLTNSIQVIWGESSMIEAERLLLESALEDPANQRFVL LSDSCVPLYNFSYIYRYLMSSSRSFVDSFLDAKDGRYHPKMSPVIPKEKWRKGSQWIS LLRSHAEVIVDDEVVLPVFKKFCKRRPPMDTGKGKLNIVKTSKAAQLY" CDS complement(join(26503804..26503932,26504322..26504402, 26504764..26504845,26505015..26505086,26505199..26505299, 26505394..26505510,26505595..26505867)) /locus_tag="TCM_030284" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG002123t1" /codon_start=1 /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein isoform 4" /protein_id="EOY28774.1" /db_xref="Phytozome:GSVIVT01012669001" /db_xref="TAIR:AT1G11940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZ98" /translation="MMKKLPAPVPARQVLWLGWKLVILLSVALCFVALLRLHFSPDLS SPNSLSRPARVRSRISGGTFDGIPKIAFLFLARFNLPLDFLWGSFFENADVANFSIYI HSAPGFVFDESTTRSLFFYDRQLTNSIQVIWGESSMIEAERLLLESALEDPANQRFVL LSDSCVPLYNFSYIYRYLMSSSRSFVDSFLDAKDGRYHPKMSPVIPKEKWRKGSQWIS LLRSHAEVIVDDEVVLPVFKKFCKRRPPMDTGKGKLNIVSEFNPLMNATGLTGHSLFY LFEMRIGG" gene complement(26506559..26514158) /locus_tag="TCM_030285" /note="dbxref CacaoGD:Thecc1EG030285" mRNA complement(join(26506559..26506882,26506999..26507364, 26507474..26507605,26508177..26508254,26508504..26508681, 26508795..26508967,26509089..26509190,26509262..26509339, 26509787..26509868,26510028..26510090,26510433..26510512, 26510608..26510802,26510917..26511181,26511393..26511547, 26511629..26511695,26511783..26512006,26512129..26512233, 26512334..26512453,26512899..26512955,26513052..26513196, 26513513..26514158)) /locus_tag="TCM_030285" /product="TRNA synthetase class I (I, L, M and V) family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s01420.1" /inference="similar to AA sequence:Phytozome:GSVIVT01012668001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1218t13" CDS complement(join(26507122..26507364,26507474..26507605, 26508177..26508254,26508504..26508681,26508795..26508967, 26509089..26509190,26509262..26509339,26509787..26509868, 26510028..26510090,26510433..26510512,26510608..26510802, 26510917..26511181,26511393..26511547,26511629..26511695, 26511783..26512006,26512129..26512233,26512334..26512453, 26512899..26512955,26513052..26513196,26513513..26513913)) /locus_tag="TCM_030285" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="TRNA synthetase class I (I, L, M and V) family protein isoform 1" /protein_id="EOY28777.1" /db_xref="Phytozome:GSVIVT01012668001" /db_xref="TAIR:AT4G04350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XEA0" /translation="MNITHAKVQPFPRSPPLHHPTLIFSSGQKLPFPRKFITAHIGRS SSFASILCKKHTLLAHGCFGVSRSRIRSSVSEVEEEQKQKSVVVKRAYPFNEIEPKWQ RYWEENRTFRTPDDVDTSKPKYYVLDMFPYPSGAGLHVGHPLGYTATDILARFKRMQG YNVLHPMGWDAFGLPAEQYAIETGTHPKLTTLRNINRFRSQLKLLGFSYDWDREISTI EPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRK PMQQWMLKITAYADRLLEDLDELDWPESIKEMQRNWIGRSEGAEMEFYVLDSDGRETD MKITVYTTRPDTIFGATYLVVAPEYTLLSSIVSAKQSESVEEYKDIASRKSDLERTEL QKEKTGVFGGCYAKNPANGEPIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFASKYTI PIKWVVTPNVGSCIESGKAYSGEGIVINSSNMMVGLDINGFSSKEAAHKVIEWAEKTG NGKKKVNYKLRDWLFARQRYWGEPIPVIFLADSGESIPVLETELPLTLPELDDFTPTG TGEPPLSKAVSWVKTIDPSSGKPATRETNTMPQWAGSCWYYLRFMDPKNSKELVDKAK EMYWSPVDIYVGGAEHAVLHLLYSRFWHKVLYDIGVVSTKEPFKCVINQGIILGEVQY VACKGTDGNYISADSANELGEHFQEIIPEERVVKSGEYFVLKDNPNICLIARAHKMSK SRGNVVNPDDVVAEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRTWRLIVGS PLPHGMFRDGTMVTDEEPTMEQLRALHKCIAKVTEEIEGTRFNTGISAMMEFINAAYK WDKHPKSIIEAFVLLLSPYTPHMAEELWSRLGHQDSIAYAPFPKADPTYLKESIIVLP VQINGKTRGTIQVEKGCSEEDAFTLASQDEKLSKYLDGKPIKKKIFVPGKILNVILDR QNVKVGVQ" mRNA complement(join(26508231..26508254,26508504..26508682, 26509260..26509339,26509787..26509868,26510028..26510090, 26510433..26510512,26510608..26510802,26510917..26511181, 26511393..26511547,26511629..26511695,26511783..26512006, 26512129..26512233,26512334..26512453,26512899..26512955, 26513052..26513196,26513513..26513966)) /locus_tag="TCM_030285" /product="TRNA synthetase class I (I, L, M and V) family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s01420.1" /inference="similar to AA sequence:ricco:29842.m003545" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1218t12; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1218t13; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8760t5" CDS complement(join(26508658..26508682,26509260..26509339, 26509787..26509868,26510028..26510090,26510433..26510512, 26510608..26510802,26510917..26511181,26511393..26511547, 26511629..26511695,26511783..26512006,26512129..26512233, 26512334..26512453,26512899..26512955,26513052..26513196, 26513513..26513913)) /locus_tag="TCM_030285" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003545" /codon_start=1 /product="TRNA synthetase class I (I, L, M and V) family protein isoform 2" /protein_id="EOY28778.1" /db_xref="TAIR:AT4G04350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XEA0" /translation="MNITHAKVQPFPRSPPLHHPTLIFSSGQKLPFPRKFITAHIGRS SSFASILCKKHTLLAHGCFGVSRSRIRSSVSEVEEEQKQKSVVVKRAYPFNEIEPKWQ RYWEENRTFRTPDDVDTSKPKYYVLDMFPYPSGAGLHVGHPLGYTATDILARFKRMQG YNVLHPMGWDAFGLPAEQYAIETGTHPKLTTLRNINRFRSQLKLLGFSYDWDREISTI EPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRK PMQQWMLKITAYADRLLEDLDELDWPESIKEMQRNWIGRSEGAEMEFYVLDSDGRETD MKITVYTTRPDTIFGATYLVVAPEYTLLSSIVSAKQSESVEEYKDIASRKSDLERTEL QKEKTGVFGGCYAKNPANGEPIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFASKYTI PIKWVVTPNVGSCIESGKAYSGEGIVINSSNMMVGLDINGFSSKEAAHKVIEWAEKTG NGKKKVNYKLRDWLFARQRYWGEPIPVIFLADSGESIPVLETELPLTLPELDDFTPTG TGEPPLSKAVSWVKTIDPSSGKPATRETNTMPQWAGSCWYYLRFMDPKNSKELVDKAK EMYWSPVDIYVGGAEHAVLHLLYSRFWHKVLYDIGVVSTKEPFKCVINQGIILGEVRL KNMEY" mobile_element 26515688..26515809 /note="source:scaffold_8_CACTA_0863 5081 5215" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26515727..26515823) /note="source:scaffold_1_CACTA_0029 7130 7229" /mobile_element_type="transposon:TIR/CACTA" gene complement(26516440..26522357) /locus_tag="TCM_030286" /note="dbxref CacaoGD:Thecc1EG030286" mRNA complement(join(26516440..26516937,26517024..26517143, 26517227..26517312,26517401..26517473,26517612..26518022, 26518335..26518664,26518777..26519473,26519576..26519639, 26519717..26519849,26520152..26520251,26520342..26520451, 26520548..26521101,26521837..26522357)) /locus_tag="TCM_030286" /product="Transcription factor jumonji domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400028749" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007714t2" /inference="similar to AA sequence:ricco:29842.m003544" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8779t2" CDS complement(join(26516854..26516937,26517024..26517143, 26517227..26517312,26517401..26517473,26517612..26518022, 26518335..26518664,26518777..26519473,26519576..26519639, 26519717..26519849,26520152..26520251,26520342..26520451, 26520548..26521096)) /locus_tag="TCM_030286" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003544; paralog of Thecc1EG007714t2" /codon_start=1 /product="Transcription factor jumonji domain-containing protein, putative isoform 1" /protein_id="EOY28779.1" /db_xref="TAIR:AT1G11950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXG4" /translation="MAAVIAKQERLNCHTGQSMQIIKEPLSSWHASKKRKPVIVHREN KRTISEWKDNVGQLSRQTKNPSKKRKLSKEIEFLEDEKIPKRHWNGVDKITTSEEEDV SDGWDEEAIVFMNVKARSKSRNSNSVMIKKSPKETKKNNCDPIDASLHSSSSLSSSSS GSLSSHLKSDGSSSDRCTKKNVKAKRDKFKCHQCMTERRIVVPCMKCEDKVYCIHCIR QWYPHIPEEKIAEQCPSCCRNCNCSICLHSSGLIKTSKRDITDQEKIKHLKYLIELMF PFLKQICKMQNQETEVEADIRGLLPSAVEIPESFCCNDERVYCNHCATSIFDLHRSCP KCSYELCLSCCQEIREGSLSTRDEVAYQYRNRGYNYIHGGDPLPESYLHESAKAQSEP SLQWKANNDGSITCPPREMGGCGDCRLELKRILPVGWISNLEAKGGEMLSICKTRQGI LKDECTVSGRETLQRVASREGSNDNCLYSPTSSDIQGEDLSHFQMHWARGEPVIVQNA LANSTGLSWEPMVTWRALCEKVDSDSSLDMSEVKAIDCLAGCEVEINTRQFFKGYMEG RRYDNFWPEMLKLKDWPPSNEFEDLLPRHCDEFISALPFQEYSDPRSGILNLAVKLPP GVLKPDLGPKTYIAYGIAEELGRGDSVTKLHCDMSDAVNILTHIADVALSKEQLAAIE ELKMKHKAQDEKEHLERERLDKHPIKEGLDAESSDLENKMDAPEIRDQKDHYSDNNIL DASPDELGARIPGLYTSRKETGGALWDIFRREDVPKLEAYLRKHSKEFRHTYCSPVEQ VIHPIHDQSFYLTMEHKRKLKEEFGVEPWTFEQHLGEAVFIPAGCPHQVRNLKSCTKV AVDFVSPENIKECLRLTEEFRQLPKNHRAREDKLEIKKMIIYGVERAIKELEELVSTP NSAL" mRNA complement(join(26516914..26516937,26517024..26517143, 26517227..26517312,26517401..26517473,26517612..26517997, 26518335..26518664,26518777..26519473,26519576..26519639, 26519717..26519849,26520152..26520251,26520342..26520451, 26520548..26521101,26521837..26522079)) /locus_tag="TCM_030286" /product="Transcription factor jumonji domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400028749" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033531t1" /inference="similar to AA sequence:ricco:29842.m003544" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc437t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8779t2" CDS complement(join(26517992..26517997,26518335..26518664, 26518777..26519473,26519576..26519639,26519717..26519849, 26520152..26520251,26520342..26520451,26520548..26521096)) /locus_tag="TCM_030286" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003544; paralog of Thecc1EG033531t1" /codon_start=1 /product="Transcription factor jumonji domain-containing protein, putative isoform 2" /protein_id="EOY28780.1" /db_xref="TAIR:AT1G11950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RXG4" /translation="MAAVIAKQERLNCHTGQSMQIIKEPLSSWHASKKRKPVIVHREN KRTISEWKDNVGQLSRQTKNPSKKRKLSKEIEFLEDEKIPKRHWNGVDKITTSEEEDV SDGWDEEAIVFMNVKARSKSRNSNSVMIKKSPKETKKNNCDPIDASLHSSSSLSSSSS GSLSSHLKSDGSSSDRCTKKNVKAKRDKFKCHQCMTERRIVVPCMKCEDKVYCIHCIR QWYPHIPEEKIAEQCPSCCRNCNCSICLHSSGLIKTSKRDITDQEKIKHLKYLIELMF PFLKQICKMQNQETEVEADIRGLLPSAVEIPESFCCNDERVYCNHCATSIFDLHRSCP KCSYELCLSCCQEIREGSLSTRDEVAYQYRNRGYNYIHGGDPLPESYLHESAKAQSEP SLQWKANNDGSITCPPREMGGCGDCRLELKRILPVGWISNLEAKGGEMLSICKTRQGI LKDECTVSGRETLQRVASREGSNDNCLYSPTSSDIQGEDLSHFQMHWARGEPVIVQNA LANSTGLSWEPMVTWRALCEKVDSDSSLDMSEVKAIDCLAGCEVEINTRQFFKGYMEG RRYDNFWPEMLKLKDWPPSNEFEDLLPRHCDEFISALPFQEYSDPRSGILNLAVKLPP GVLKPDLGPKTYIAYGIAEELGRGDSVTKLHCDMSDAM" mobile_element 26522513..26522567 /note="source:CACAO_PIF_E144_scaffold_10 5995 6049" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 26522572..26523767 /locus_tag="TCM_030287" /note="dbxref CacaoGD:Thecc1EG030287" mRNA join(26522572..26523193,26523445..26523767) /locus_tag="TCM_030287" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036197t1" /inference="similar to AA sequence:ricco:29686.m000865" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage" CDS join(26522642..26523193,26523445..26523501) /locus_tag="TCM_030287" /note="dbxref ricco:29686.m000865; paralog of Thecc1EG036197t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28781.1" /translation="MTTEVALKSLFSSIEDELFIEYHTQSTTTEVPVLDGEPDLDYYY DESMMTMVPWGYRFVPTDEDLILHYLSNKAKGEALPCQGITDCEIYGDEDKEPWKIFG RTSAEKFYVFIKLKKKGKGKRIERRAGRGTWKGQRTDPVMDSENNPIGFKKLFVFEIK DEDSNNVKRCHGHWLMYEYSLPTETDYVLCAIRNKHATTKPA" mobile_element 26523680..26523749 /note="source:CACAO_Again_on_E173_scaffold_7 1 74" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(26523690..26523770) /note="source:CACAO_hAT_E2824_scaffold_6 1270 1357" /mobile_element_type="transposon:TIR/hAT" mobile_element 26523771..26523889 /note="source:CACAO_hAT_E488_scaffold_1 580 859" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(26523890..26523988) /note="source:scaffold_3_CACTA_0398 3474 3583" /mobile_element_type="transposon:TIR/CACTA" gene 26524417..26526006 /locus_tag="TCM_030288" /note="dbxref CacaoGD:Thecc1EG030288" mRNA 26524417..26526006 /locus_tag="TCM_030288" /product="Mitochondrial transcription termination factor family protein" /inference="alignment:exonerate- protein:2:ricco:30169.m006315" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033396t1" /inference="similar to AA sequence:ricco:30169.m006315" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc179t7" CDS 26524536..26525660 /locus_tag="TCM_030288" /note="dbxref ricco:30169.m006315; paralog of Thecc1EG033396t1" /codon_start=1 /product="Mitochondrial transcription termination factor family protein" /protein_id="EOY28782.1" /db_xref="TAIR:AT1G79220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RI01" /translation="MFSKAHLLLKLRCIVSASKHQLSTVTAVRITATYSTICQNQAEN HTEAAVEPPRDSAELFRKWGCSENDLGQIFSRQPALRHAQVAPLLSKLKLLSDLGLTA SDIVTMINCRPRFFCSRINHCFDERLDFFLTLFGSREVLRKALVRNPSLLTYDFHGTI KPVIALYEEMGIAGNDLIAMLISRPTLIPRTSFNDEKMEYIKKTGVSKGSKMYKYVVA LIGISRIETIQEKVTNLEKFGCSEDEVWSLLGRSPLILTLSVDKVQRNMTFVVGTMKL SPKLVLQYPFLLFCNLEAVLKPRVLLAGKLKDMELHPQIKGAMMLRALRMKESRFLSA FVTCHPENVATELLEFYKHAKCVKRLAEASKMKVRKGFPF" gene complement(26525803..26532301) /locus_tag="TCM_030289" /note="dbxref CacaoGD:Thecc1EG030289" mRNA complement(join(26525803..26526927,26527138..26527371, 26527458..26527782,26528371..26528616,26528701..26529041, 26529343..26529423,26529527..26529646,26529826..26529927, 26530532..26530667,26530819..26530971,26531242..26531571, 26531819..26532177)) /locus_tag="TCM_030289" /product="ERD (early-responsive to dehydration stress) family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003543" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002125t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012666001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8813t2" CDS complement(join(26526664..26526927,26527138..26527371, 26527458..26527782,26528371..26528616,26528701..26529041, 26529343..26529423,26529527..26529646,26529826..26529927, 26530532..26530667,26530819..26530971,26531242..26531555)) /locus_tag="TCM_030289" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002125t1" /codon_start=1 /product="ERD (early-responsive to dehydration stress) family protein isoform 1" /protein_id="EOY28783.1" /db_xref="Phytozome:GSVIVT01012666001" /db_xref="TAIR:AT4G22120.6" /db_xref="UniProtKB/TrEMBL:UniRef50_O65383" /translation="MATLGDIGVAAGINLLSAVVFFLAFAILRLQPFNDRVYFPKWYL KGLRSSPSGSGAFVRKFVNLDFRSYLRFLHWMPEALKMPEPELIEHAGLDSAVYLRIY LIGLKIFVPIAFLAWAVLVPVNYTNKTLELQLKNVTSSDIDKLSISNIRRGSDRLWTH IVVAYAFTFWTFYVLLKEYETVAAMRLQFLASEKRRPDQFTVLVRNVPPDPDESVSES VEHFFLVNHPDTYLTHQAVCNANKLAKLVKKRKSKQNWLDYYQLKYSRNSAKRPFMKT GFLGLRGEKVDAIDHHISEIEKLSKEIAEERERVKKDPKCIMPAAFVSFKSRWGAAVC AQTQQSRNPTLWLTEWASEPRDVYWQNLAIPYVSLAVRRLIMAVAFFFLTFFFMIPIA SVQALASIEGLEKAAPFLKPLIEIKFIKSVIQGFLPGIVLKLFLIFLPTILMIMSKFE GFTSISSLERRSATRYYLFNLVNVFLGSVIAGSALEQLNTFVKQSANEIPKTIGVAVP MRATFFITYIMVDGWAGIAAEILMLKPLIIYHLKNFFLVKTEKDREEAMDPGSLGFNT GEPRIQLYFLLGMVYATITPVLLPFIIVFFGLAYVVFRHQIINVYNQEYESAAAFWPD VHGRIIIALLISQITLIGLLSTMQAAQSTPFLIALAVLTIWFYRFCKARYEPAFVRYP LQEAMMKDTLERAREPNLNLKPYLHNAYVHPVFKEEDDDDGDDFMFKSENESVLVPTK RQSRRNTPVPSRISGASSPSLPEAVPEHSEP" mRNA complement(join(26526862..26527371,26528371..26528616, 26528701..26529041,26529343..26529423,26529527..26529646, 26529826..26529927,26530532..26530667,26530819..26530971, 26531242..26531571,26531819..26532301)) /locus_tag="TCM_030289" /product="ERD (early-responsive to dehydration stress) family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29842.m003543" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002125t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012666001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc216t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8813t2" mRNA complement(join(26526905..26526927,26527138..26527782, 26528371..26528616,26528701..26529041,26529343..26529423, 26529527..26529646,26529826..26529927,26530532..26530667, 26530819..26530971,26531242..26531571,26531819..26532301)) /locus_tag="TCM_030289" /product="ERD (early-responsive to dehydration stress) family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29842.m003543" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002125t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012666001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc212t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8813t2" CDS complement(join(26527299..26527371,26528371..26528616, 26528701..26529041,26529343..26529423,26529527..26529646, 26529826..26529927,26530532..26530667,26530819..26530971, 26531242..26531555)) /locus_tag="TCM_030289" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG002125t1" /codon_start=1 /product="ERD (early-responsive to dehydration stress) family protein isoform 3" /protein_id="EOY28785.1" /db_xref="Phytozome:GSVIVT01012666001" /db_xref="TAIR:AT4G22120.6" /db_xref="UniProtKB/TrEMBL:UniRef50_O65383" /translation="MATLGDIGVAAGINLLSAVVFFLAFAILRLQPFNDRVYFPKWYL KGLRSSPSGSGAFVRKFVNLDFRSYLRFLHWMPEALKMPEPELIEHAGLDSAVYLRIY LIGLKIFVPIAFLAWAVLVPVNYTNKTLELQLKNVTSSDIDKLSISNIRRGSDRLWTH IVVAYAFTFWTFYVLLKEYETVAAMRLQFLASEKRRPDQFTVLVRNVPPDPDESVSES VEHFFLVNHPDTYLTHQAVCNANKLAKLVKKRKSKQNWLDYYQLKYSRNSAKRPFMKT GFLGLRGEKVDAIDHHISEIEKLSKEIAEERERVKKDPKCIMPAAFVSFKSRWGAAVC AQTQQSRNPTLWLTEWASEPRDVYWQNLAIPYVSLAVRRLIMAVAFFFLTFFFMIPIA SVQALASIEGLEKAAPFLKPLIEIKFIKSVIQGFLPGIVLKLFLIFLPTILMIMSKFE GFTSISSLERRSATRYYLFNLVNVFLGSVIAGSALEQLNTFVKQSANESLMSTIKSMR VLQHSGLMSMDAL" CDS complement(join(26527419..26527782,26528371..26528616, 26528701..26529041,26529343..26529423,26529527..26529646, 26529826..26529927,26530532..26530667,26530819..26530971, 26531242..26531555)) /locus_tag="TCM_030289" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002125t1" /codon_start=1 /product="ERD (early-responsive to dehydration stress) family protein isoform 2" /protein_id="EOY28784.1" /db_xref="Phytozome:GSVIVT01012666001" /db_xref="TAIR:AT4G22120.6" /db_xref="UniProtKB/TrEMBL:UniRef50_O65383" /translation="MATLGDIGVAAGINLLSAVVFFLAFAILRLQPFNDRVYFPKWYL KGLRSSPSGSGAFVRKFVNLDFRSYLRFLHWMPEALKMPEPELIEHAGLDSAVYLRIY LIGLKIFVPIAFLAWAVLVPVNYTNKTLELQLKNVTSSDIDKLSISNIRRGSDRLWTH IVVAYAFTFWTFYVLLKEYETVAAMRLQFLASEKRRPDQFTVLVRNVPPDPDESVSES VEHFFLVNHPDTYLTHQAVCNANKLAKLVKKRKSKQNWLDYYQLKYSRNSAKRPFMKT GFLGLRGEKVDAIDHHISEIEKLSKEIAEERERVKKDPKCIMPAAFVSFKSRWGAAVC AQTQQSRNPTLWLTEWASEPRDVYWQNLAIPYVSLAVRRLIMAVAFFFLTFFFMIPIA SVQALASIEGLEKAAPFLKPLIEIKFIKSVIQGFLPGIVLKLFLIFLPTILMIMSKFE GFTSISSLERRSATRYYLFNLVNVFLGSVIAGSALEQLNTFVKQSANEIPKTIGVAVP MRATFFITYIMVDGWAGIAAEILMLKPLIIYHLKNFFLVKTEKDREEAMDPGSLGFNT GEPRIQLYFLLGMVYATITPVLLPFIIVFFGLAYVVFRHQVKNLDMEYSLQW" gene 26532453..26534046 /locus_tag="TCM_030290" /note="dbxref CacaoGD:Thecc1EG030290" mRNA join(26532453..26532560,26533087..26534046) /locus_tag="TCM_030290" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.45 coverage" CDS join(26532475..26532560,26533087..26533237) /locus_tag="TCM_030290" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28786.1" /translation="MAKAIDVDWLSASVGLGFWVMWPRGYSVRLAGNKTCLVEHWEFP EAGGGQDAECRPTPPMKMTVCINGQERDFVKLIQ" gene complement(26534598..26539308) /locus_tag="TCM_030291" /note="dbxref CacaoGD:Thecc1EG030291" mRNA complement(join(26534598..26535309,26535400..26535498, 26535602..26535740,26535840..26535931,26536015..26536166, 26536266..26536362,26536578..26536667,26536802..26536998, 26537338..26537496,26537619..26537626,26537741..26537939, 26538626..26539308)) /locus_tag="TCM_030291" /product="Chitin elicitor receptor kinase 1, RLK1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s01470.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002137t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s01470.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8777t1" CDS complement(join(26535145..26535309,26535400..26535498, 26535602..26535740,26535840..26535931,26536015..26536166, 26536266..26536362,26536578..26536667,26536802..26536998, 26537338..26537496,26537619..26537626,26537741..26537939, 26538626..26539253)) /locus_tag="TCM_030291" /note="paralog of Thecc1EG002137t1" /codon_start=1 /product="Chitin elicitor receptor kinase 1, RLK1" /protein_id="EOY28787.1" /db_xref="Phytozome:POPTR_0011s01470.1" /db_xref="TAIR:AT3G21630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q70KR7" /translation="MFSKRKTPTERLLVFHTLLYLFVQVQANCRTGCSLAFASYYVWE GSNLTYISTIFNQQISEILLYNPHVSSQDKIDKGTRINVPFSCDCLNGDFLGHTFSYF TQIGDTYDKIASDWYANLTTADWVRRVNVYDATKIPDHMLINVTVNCSCGVRQVSKDY GLFTTYPLRPGENLSFIAAESNVSAELLEKYNPGSNFSAGTGLLFVPAKEDDVGICYG IFNCQILVLCISLMKYSGDSSVITLMSIILIIRWFSLISRAFYSFADQTGNFPPLKIS TTGISSRVIAGISIAGVAGALTLGFCIYAGLYKRKKVVEASLLLEASPDHYIQHGGSG STLQKNSETTALFASPGLTGITVDKSVEFSYEELAKATDDFSIANKIGQGGFGSVYLA ELRGEKAAIKKMDMQASKEFLAELRVLTHVHHFNLVRLIGYCVEGSLFLVYEFIENGN LSQHLRQQRERDPLPWSARVQIALDSARGLEYIHEHTVPVYVHRDIKSANILIDKNFR AKVADFGLTKLSEFGNYSLQTRLVGTFGYMPPEYAQYGEVSPKVDVYAFGVVLFELIS AREAIVKTNEEVTESMGLVALFEDVLNQPDPREDLQKLVDPRLGNDYSFDAVCKMARL ARACTQENPQLRPSMRSIVVALMALSSSSEDWDVGSLYENKALINLMPGR" gene 26539780..26541015 /locus_tag="TCM_030292" /note="dbxref CacaoGD:Thecc1EG030292" mRNA join(26539780..26540011,26540118..26540212, 26540297..26540414,26540531..26540547,26540629..26540691, 26540778..26541015) /locus_tag="TCM_030292" /product="Chaperonin-like RbcX protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s01520.1" /inference="similar to AA sequence:Phytozome:Glyma15g11800.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03180t00001" CDS join(26539861..26540011,26540118..26540212, 26540297..26540414,26540531..26540547,26540629..26540691, 26540778..26540861) /locus_tag="TCM_030292" /codon_start=1 /product="Chaperonin-like RbcX protein" /protein_id="EOY28788.1" /db_xref="Phytozome:Glyma15g11800.1" /db_xref="TAIR:AT4G04330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94AU9" /translation="METLAVLPLTQPPFLPSNPMNKDTGFPSWPCKQRSSYSSTRLNC QKMFVPGFGEASPEAKASKNLHNFFNYIAVKIVSAQLQSYNPEAYKELMEFLNTHSLN DGDKFCASLMRESSRHKSLALRILEVRSAYCKHDFEWDNLKRLASKMVDESNTKLMRE YVLETSPATEKETGK" gene complement(26541070..26546788) /locus_tag="TCM_030293" /note="dbxref CacaoGD:Thecc1EG030293" mRNA complement(join(26541070..26541437,26541560..26541644, 26541891..26541976,26542285..26542357,26542559..26542687, 26543320..26543501,26543887..26543970,26544171..26544248, 26544323..26544381,26544515..26544605,26544709..26544853, 26545540..26545729,26545825..26545951,26546041..26546131, 26546224..26546312,26546486..26546788)) /locus_tag="TCM_030293" /product="Malonyl-CoA decarboxylase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012659001" /inference="similar to AA sequence:Phytozome:GSVIVT01012659001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1006t13" mRNA complement(join(26541085..26541437,26542558..26542687, 26543320..26543501,26543887..26543970,26544171..26544248, 26544323..26544381,26544515..26544605,26544709..26544853, 26545540..26545729,26545825..26545951,26546041..26546131, 26546224..26546312,26546486..26546733)) /locus_tag="TCM_030293" /product="Malonyl-CoA decarboxylase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012659001" /inference="similar to AA sequence:Phytozome:GSVIVT01012659001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1017t10; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1006t13" CDS complement(join(26541405..26541437,26541560..26541644, 26541891..26541976,26542285..26542357,26542559..26542687, 26543320..26543501,26543887..26543970,26544171..26544248, 26544323..26544381,26544515..26544605,26544709..26544853, 26545540..26545729,26545825..26545951,26546041..26546131, 26546224..26546312,26546486..26546569)) /locus_tag="TCM_030293" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Malonyl-CoA decarboxylase family protein isoform 1" /protein_id="EOY28789.1" /db_xref="Phytozome:GSVIVT01012659001" /db_xref="TAIR:AT4G04320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6H400" /translation="MNKKALAILMRARMRPNDPSKLALSPLSNEVNQMLSNSQGNQAP HATEDGNEKLNKQRSFEVVRDSMHSAISMNKTEVLDAVLNDFSEGYFSLSFENRRKLL LTLAKEYDLNRTQVRELIKQYLGLQLPGVSGNEAQSGGVEDEGFLSTFYRIERNLRHS LKPVYEVLFERLNTHPGGLKVLTILRADILSILAEENISSLRALDSYLKEKLSTWLSP AALELHQITWDDPASLLEKIVAYEAVHPISNLIDLKRRLGVGRRCFGYFHSAIPGEPL IFIEVALLKAVAQTIQEVLWDHPPILESEATCALFYSISSTQPGLAGINLGKFLIKRV ITLVKRDMPHISVFATLSPIPGFMQWLLSKLASQSKLGEAEDISCSSADRSGLTFYEN LLEPEEERGLIESSGDFAAGKNGMEIMLNLLTPTSHDWTNSSKLLSAFKPALMRLCAR YLLQEKKRGKALDSVANFHLQNGAMVQRINWMADRSEKGLRQSAGIMVNYVYRPETIE EYAHSYFSSGHIHCSSDVRRYVQPFTENESSTD" CDS complement(join(26541405..26541437,26542558..26542687, 26543320..26543501,26543887..26543970,26544171..26544248, 26544323..26544381,26544515..26544605,26544709..26544853, 26545540..26545729,26545825..26545951,26546041..26546131, 26546224..26546312,26546486..26546569)) /locus_tag="TCM_030293" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Malonyl-CoA decarboxylase family protein isoform 4" /protein_id="EOY28792.1" /db_xref="Phytozome:GSVIVT01012659001" /db_xref="TAIR:AT4G04320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6H400" /translation="MNKKALAILMRARMRPNDPSKLALSPLSNEVNQMLSNSQGNQAP HATEDGNEKLNKQRSFEVVRDSMHSAISMNKTEVLDAVLNDFSEGYFSLSFENRRKLL LTLAKEYDLNRTQVRELIKQYLGLQLPGVSGNEAQSGGVEDEGFLSTFYRIERNLRHS LKPVYEVLFERLNTHPGGLKVLTILRADILSILAEENISSLRALDSYLKEKLSTWLSP AALELHQITWDDPASLLEKIVAYEAVHPISNLIDLKRRLGVGRRCFGYFHSAIPGEPL IFIEVALLKAVAQTIQEVLWDHPPILESEATCALFYSISSTQPGLAGINLGKFLIKRV ITLVKRDMPHISVFATLSPIPGFMQWLLSKLASQSKLGEAEDISCSSADRSGLTFYEN LLEPEEERGLIESSGDFAAGKNGMEIMLNLLTPTSHDWTNSSKLLSAFKPALMRLCAR PFTENESSTD" mRNA complement(join(26541936..26541976,26542285..26542687, 26543320..26543501,26543887..26543970,26544171..26544248, 26544323..26544381,26544515..26544605,26544709..26544853, 26545540..26545729,26545825..26545951,26546041..26546131, 26546224..26546312,26546486..26546733)) /locus_tag="TCM_030293" /product="Malonyl-CoA decarboxylase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012659001" /inference="similar to AA sequence:Phytozome:GSVIVT01012659001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1017t6; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1006t13" mRNA complement(join(26541937..26542357,26542559..26542687, 26543320..26543501,26543887..26543970,26544171..26544248, 26544323..26544381,26544515..26544605,26544709..26544853, 26545540..26545729,26545825..26545951,26546041..26546131, 26546224..26546312,26546486..26546733)) /locus_tag="TCM_030293" /product="Malonyl-CoA decarboxylase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012659001" /inference="similar to AA sequence:Phytozome:GSVIVT01012659001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1017t8; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1006t13" CDS complement(join(26542219..26542357,26542559..26542687, 26543320..26543501,26543887..26543970,26544171..26544248, 26544323..26544381,26544515..26544605,26544709..26544853, 26545540..26545729,26545825..26545951,26546041..26546131, 26546224..26546312,26546486..26546569)) /locus_tag="TCM_030293" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Malonyl-CoA decarboxylase family protein isoform 2" /protein_id="EOY28790.1" /db_xref="Phytozome:GSVIVT01012659001" /db_xref="TAIR:AT4G04320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6H400" /translation="MNKKALAILMRARMRPNDPSKLALSPLSNEVNQMLSNSQGNQAP HATEDGNEKLNKQRSFEVVRDSMHSAISMNKTEVLDAVLNDFSEGYFSLSFENRRKLL LTLAKEYDLNRTQVRELIKQYLGLQLPGVSGNEAQSGGVEDEGFLSTFYRIERNLRHS LKPVYEVLFERLNTHPGGLKVLTILRADILSILAEENISSLRALDSYLKEKLSTWLSP AALELHQITWDDPASLLEKIVAYEAVHPISNLIDLKRRLGVGRRCFGYFHSAIPGEPL IFIEVALLKAVAQTIQEVLWDHPPILESEATCALFYSISSTQPGLAGINLGKFLIKRV ITLVKRDMPHISVFATLSPIPGFMQWLLSKLASQSKLGEAEDISCSSADRSGLTFYEN LLEPEEERGLIESSGDFAAGKNGMEIMLNLLTPTSHDWTNSSKLLSAFKPALMRLCAR YLLQEKKRGKALDSVANFHLQNGAVCNAVSIIDQQSPFGGRINSF" CDS complement(join(26542513..26542687,26543320..26543501, 26543887..26543970,26544171..26544248,26544323..26544381, 26544515..26544605,26544709..26544853,26545540..26545729, 26545825..26545951,26546041..26546131,26546224..26546312, 26546486..26546569)) /locus_tag="TCM_030293" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Malonyl-CoA decarboxylase family protein isoform 3" /protein_id="EOY28791.1" /db_xref="Phytozome:GSVIVT01012659001" /db_xref="TAIR:AT4G04320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6H400" /translation="MNKKALAILMRARMRPNDPSKLALSPLSNEVNQMLSNSQGNQAP HATEDGNEKLNKQRSFEVVRDSMHSAISMNKTEVLDAVLNDFSEGYFSLSFENRRKLL LTLAKEYDLNRTQVRELIKQYLGLQLPGVSGNEAQSGGVEDEGFLSTFYRIERNLRHS LKPVYEVLFERLNTHPGGLKVLTILRADILSILAEENISSLRALDSYLKEKLSTWLSP AALELHQITWDDPASLLEKIVAYEAVHPISNLIDLKRRLGVGRRCFGYFHSAIPGEPL IFIEVALLKAVAQTIQEVLWDHPPILESEATCALFYSISSTQPGLAGINLGKFLIKRV ITLVKRDMPHISVFATLSPIPGFMQWLLSKLASQSKLGEAEDISCSSADRSGLTFYEN LLEPEEERGLIESSGDFAAGKNGMEIMLNLLTPTSHDWTNSSKLLSAFKPALMRLCAR YISPIKLLSIILTK" mobile_element 26548188..26548991 /note="source:CACAO_M_E49294_F2_scaffold_6 1 804" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26548446..26557792) /locus_tag="TCM_030294" /note="dbxref CacaoGD:Thecc1EG030294" mRNA complement(join(26548446..26548736,26550697..26551072, 26551288..26551328,26551408..26551624,26553858..26554055, 26554161..26554265,26554809..26554964,26555279..26555350, 26555431..26555540,26555999..26556197,26556550..26556723, 26556917..26556966,26557213..26557318,26557405..26557450, 26557515..26557792)) /locus_tag="TCM_030294" /product="LisH dimerization motif,WD40/YVTN repeat-like-containing domain" /inference="alignment:exonerate- protein:2:ricco:30190.m010867.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029842t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s04540.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element 26549523..26550697 /note="source:INTACT639F_F363_scaffold_5-int 7466 8572" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(26550719..26551072,26551288..26551328, 26551408..26551624,26553858..26554055,26554161..26554265, 26554809..26554964,26555279..26555350,26555431..26555540, 26555999..26556197,26556550..26556723,26556917..26556966, 26557213..26557318,26557405..26557450,26557515..26557567)) /locus_tag="TCM_030294" /note="paralog of Thecc1EG029842t1" /codon_start=1 /product="LisH dimerization motif,WD40/YVTN repeat-like-containing domain" /protein_id="EOY28793.1" /db_xref="Phytozome:POPTR_0004s04540.1" /db_xref="TAIR:AT2G32700.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RBC4" /translation="MIWIKKGSICMIIHAGECRQQQQINFALHQVKREHSQGITLGRT IPVNPLTPYGAQKGILPATGPDTAGLNDSINLAPLNGWPLDASNCQQQLQILKSQPEI SAQGLSHMPRNLTPTFPGSSAKFNYRNPKLPKIEINGNNRQMMIQQMQTEEQQNQHNM LQQQHCSFIMIHDTVESFLSHDDDNVDSTSTPFSVLRHRYNPSNEIEQKGFTFGEVSC LHSSKSKVLCCHFSSDGKFLAGAGHEKKVLIWNMETLDFVRTSEGHSHLITEPSKSLC KLVGHAEQVLSLDFHLRKLDLLCSCDSNNEMRLWNVNQRSCMHVSKGATKQVRFQPQL GKLIATVSGNVVNIIDFETDKPPGHNKEVLSICWDPSGNYIASISEDSARLWSMIDGE CIHELCSTGNKFQSCTFHPVYSLLLVIGGYQVKRVNCSMEHGPMHPPVSQKIHWQPDL PVRHFNYTPRVQNFHGDGALLNRKSTPTFVSALLEKDRDGPHSKKACEALDAKPERDD QVQKVKFDEYIKSQESRWSTFQKKLADFLSSAVYLFLAYPLRYAQTCMATDVKTTGWQ FNGTLDVCIKTWKVDGIAGMFRGYTMALAQLGVEKVLSPLLTPWRHSLYLQTRVSESF GQ" mobile_element complement(26551565..26551600) /note="source:CACAO_M_S_E16683_F28_scaffold_2 5826 5861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26555636..26555704) /note="source:scaffold_3_CACTA_0384 758 832" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26555648..26555705) /note="source:CACAO_M_E43428_F369_scaffold_5 1275 1334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26555705..26555733 /note="source:CACAO_M_E73089_F74_scaffold_10 3477 3520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26561036..26561245) /note="source:scaffold_7_CACTA_0795 3041 3284" /mobile_element_type="transposon:TIR/CACTA" gene 26561855..26562806 /locus_tag="TCM_030296" /note="dbxref CacaoGD:Thecc1EG030296" mRNA 26561855..26562806 /locus_tag="TCM_030296" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete" CDS 26561996..26562316 /locus_tag="TCM_030296" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28794.1" /translation="MESFQIQSQKRERVCLLPMSSQLDILVNFRNSSQTPPASLNLPG QGARLRLSQSLAIPGHQGPASLNEKVANNGITGNNIFTFGRWIMTFFTSLVRVFHRCP FFSC" gene 26562682..26568697 /locus_tag="TCM_030297" /note="dbxref CacaoGD:Thecc1EG030297" mRNA join(26562682..26562942,26562998..26563527, 26563993..26564125,26564227..26564298,26564396..26564461, 26564551..26564622,26564728..26564799,26565247..26565318, 26565425..26565490,26565569..26565634,26565723..26566030, 26566221..26566474,26566574..26566845,26566974..26567109, 26567230..26567369,26567481..26567637,26567768..26568697) /locus_tag="TCM_030297" /product="STRUBBELIG-receptor family 8 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004806001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029265t1" /inference="similar to AA sequence:Phytozome:Glyma15g11820.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8815t1" mRNA join(26563056..26563527,26564230..26564298, 26564396..26564461,26564551..26564622,26564728..26564799, 26565247..26565318,26565425..26565490,26565569..26565634, 26565723..26566030,26566221..26566474,26566574..26566845, 26566974..26567109,26567230..26567369,26567481..26567637, 26567768..26568357) /locus_tag="TCM_030297" /product="STRUBBELIG-receptor family 8 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004806001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029265t1" /inference="similar to AA sequence:Phytozome:Glyma15g11820.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc10t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8815t1" CDS join(26563407..26563527,26563993..26564125, 26564227..26564298,26564396..26564461,26564551..26564622, 26564728..26564799,26565247..26565318,26565425..26565490, 26565569..26565634,26565723..26566030,26566221..26566474, 26566574..26566845,26566974..26567109,26567230..26567369, 26567481..26567637,26567768..26567920) /locus_tag="TCM_030297" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029265t1" /codon_start=1 /product="STRUBBELIG-receptor family 8 isoform 1" /protein_id="EOY28795.1" /db_xref="Phytozome:Glyma15g11820.1" /db_xref="TAIR:AT4G22130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6R2J8" /translation="MAYNNRAFSLSLTRLLLTDLVLQCLILAFTPVQCTTDSTDVQAL QVMYTALNSPAKLTNWKTNGGDPCGESWKGVTCEGSAVVSVDISGLGLSGAMGYLLSD LMSLRTLDLSNNNIHDTIPYQLPPNLTSLNLAGNNLSGNLPYSISTMVTLTYLNLSHN SLSLSVGDIFANLADLGTLDLSFNNFSGDLPNSFSSLSNLSMLYMQNNQLTGSLNVLS GLSLTILNVAKNHFSGWIPQELFSLPTFIYDGNSFANGPAPPPPPYSPPPPRRSHNKH NSGSGARTSPASDGQSSDSDNGPSAQLIVGIVLGSLLLVVLALLALVFCIHKNKKKVS GARASRGSLSVGSNDGHTEMQEQRVKNVAAVIDLKPPPAEKLTVDKMSKNGSLKRMKS PITATSYTVASLQTATNSFSQEYLIGEGSLGRVYRAEFPNGKTMAIKKIDNAALSLQE EDNFLEAVSNMSRLRHPNIVTLAGYCAEHGQRLLVYEYVGNGSLHDMLHFSDDGSKTL SWNARVRVALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPN TERQVSTQMVGSFGYSAPEFALSGLYTVKSDVYSFGVVMLELLTGRKPLDSSRTRSEQ SLVRWATPQLHDIDALAKMVDPALNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVV QALVRLVQRASVVKRRSSDESGFAYKTPDHDAVDMSF" CDS join(26564258..26564298,26564396..26564461, 26564551..26564622,26564728..26564799,26565247..26565318, 26565425..26565490,26565569..26565634,26565723..26566030, 26566221..26566474,26566574..26566845,26566974..26567109, 26567230..26567369,26567481..26567637,26567768..26567920) /locus_tag="TCM_030297" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029265t1" /codon_start=1 /product="STRUBBELIG-receptor family 8 isoform 2" /protein_id="EOY28796.1" /db_xref="Phytozome:Glyma15g11820.1" /db_xref="TAIR:AT4G22130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6R2J8" /translation="MGYLLSDLMSLRTLDLSNNNIHDTIPYQLPPNLTSLNLAGNNLS GNLPYSISTMVTLTYLNLSHNSLSLSVGDIFANLADLGTLDLSFNNFSGDLPNSFSSL SNLSMLYMQNNQLTGSLNVLSGLSLTILNVAKNHFSGWIPQELFSLPTFIYDGNSFAN GPAPPPPPYSPPPPRRSHNKHNSGSGARTSPASDGQSSDSDNGPSAQLIVGIVLGSLL LVVLALLALVFCIHKNKKKVSGARASRGSLSVGSNDGHTEMQEQRVKNVAAVIDLKPP PAEKLTVDKMSKNGSLKRMKSPITATSYTVASLQTATNSFSQEYLIGEGSLGRVYRAE FPNGKTMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHPNIVTLAGYCAEHGQRLLVYE YVGNGSLHDMLHFSDDGSKTLSWNARVRVALGTARALEYLHEVCLPSVVHRNFKSANI LLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGLYTVKSDVYSFGV VMLELLTGRKPLDSSRTRSEQSLVRWATPQLHDIDALAKMVDPALNGMYPAKSLSRFA DIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRSSDESGFAYKTPDHDAVDMSF " gene 26568733..26573097 /locus_tag="TCM_030298" /note="dbxref CacaoGD:Thecc1EG030298" mRNA join(26568733..26569661,26569848..26569937, 26570065..26570164,26570256..26570317,26570431..26570519, 26570772..26570892,26570993..26571136,26571296..26571630, 26571757..26571997,26572441..26573097) /locus_tag="TCM_030298" /product="O-fucosyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003536" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029672t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s01550.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8809t2" CDS join(26569233..26569661,26569848..26569937, 26570065..26570164,26570256..26570317,26570431..26570519, 26570772..26570892,26570993..26571136,26571296..26571630, 26571757..26571997,26572441..26572749) /locus_tag="TCM_030298" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029672t1" /codon_start=1 /product="O-fucosyltransferase family protein isoform 1" /protein_id="EOY28797.1" /db_xref="Phytozome:POPTR_0011s01550.1" /db_xref="TAIR:AT1G62330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HYR4" /translation="MSLSSNANNFHNLALESKLDQPNTIRIPDRVDLRLSPRSRQGSP SQSPRVGPSRFMNGGNSGASLVGAELLGKLWGGRKKQSKKVKRKGGKVWYQRKGVKGL VVVVALVGLFFLVNWFMLLRLQDHRVRLHDRSSRNSSVSIQGKVKKLSKGKRQYHGIY GRMLALAAHALAEGQNKREPKDLWQEPVVPASAWRPCADQRNWEPSEGKNGYLMVTAN GGMNQQRVAVCNAVVVARLLNATLVVPKFMYSSVWKDVSQFSDIYQEEHFINYLTPDI RIVKELPEELQSLDLEAIGSVVTDVDITKESKPSFYLKNILPILLQKRVVHFVGFGNR LAFDPIPFQLQRLRCRCNFHALKFVPKIQETGALLLERLRRHSAHPGALDHFLVGSRA VSAMIARSDRAAKASKYLALHLRFEIDMVAHSLCEFGGGEEERQELEAYRQIHFPALT ELKKTEKLPSPAVLRSEGLCPLTPEEAVLMLAALGFNRKTHVYVAGAQIYGGRARLAA LTSLYPNLVTKENLLSPKELEPFMNFSSQLAALDFIACTAADAFAMTDSGSQLSSLVS GYRIYYGGGRMPTIRPNKRRLAAIFMKNNTIEWKVFEQRVRKAVRQTKHVQSRPKARS VYRYPRCKECMCLTN" mRNA join(26569908..26569937,26570065..26570317, 26570431..26570519,26570772..26570892,26570993..26571136, 26571296..26571630,26571757..26571997,26572441..26572932) /locus_tag="TCM_030298" /product="O-fucosyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29842.m003536" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029672t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s01550.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc950t4_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8809t2" CDS join(26570276..26570317,26570431..26570519, 26570772..26570892,26570993..26571136,26571296..26571630, 26571757..26571997,26572441..26572749) /locus_tag="TCM_030298" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029672t1" /codon_start=1 /product="O-fucosyltransferase family protein isoform 2" /protein_id="EOY28798.1" /db_xref="Phytozome:POPTR_0011s01550.1" /db_xref="TAIR:AT1G62330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HYR4" /translation="MVTANGGMNQQRVAVCNAVVVARLLNATLVVPKFMYSSVWKDVS QFSDIYQEEHFINYLTPDIRIVKELPEELQSLDLEAIGSVVTDVDITKESKPSFYLKN ILPILLQKRVVHFVGFGNRLAFDPIPFQLQRLRCRCNFHALKFVPKIQETGALLLERL RRHSAHPGALDHFLVGSRAVSAMIARSDRAAKASKYLALHLRFEIDMVAHSLCEFGGG EEERQELEAYRQIHFPALTELKKTEKLPSPAVLRSEGLCPLTPEEAVLMLAALGFNRK THVYVAGAQIYGGRARLAALTSLYPNLVTKENLLSPKELEPFMNFSSQLAALDFIACT AADAFAMTDSGSQLSSLVSGYRIYYGGGRMPTIRPNKRRLAAIFMKNNTIEWKVFEQR VRKAVRQTKHVQSRPKARSVYRYPRCKECMCLTN" gene complement(26573080..26576918) /locus_tag="TCM_030299" /note="dbxref CacaoGD:Thecc1EG030299" mRNA complement(join(26573080..26573650,26573732..26574004, 26574100..26574367,26574463..26574803,26574915..26575197, 26575419..26575488,26575601..26575696,26575834..26576231, 26576329..26576473,26576679..26576918)) /locus_tag="TCM_030299" /product="PA-domain containing subtilase family protein" /inference="alignment:exonerate- protein:2:ricco:29842.m003535" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039425t2" /inference="similar to AA sequence:Phytozome:GSVIVT01004808001" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc3055t1" CDS complement(join(26573238..26573650,26573732..26574004, 26574100..26574367,26574463..26574803,26574915..26575197, 26575419..26575488,26575601..26575696,26575834..26576231, 26576329..26576473,26576679..26576860)) /locus_tag="TCM_030299" /note="paralog of Thecc1EG039425t2" /codon_start=1 /product="PA-domain containing subtilase family protein" /protein_id="EOY28799.1" /db_xref="Phytozome:GSVIVT01004808001" /db_xref="TAIR:AT1G62340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZB1" /translation="MANGVAALAASSSAILLLSMSFIASFAEERAIYLVLMEGEAVAF NGDSLPRQHGRKFDPKSEASKVHAKKLVDSHDQVLQSTLETGSYNKLYSFTNVLNGFA VHTAPSQATKLKHAPGIKLVERDRRTKLMTTYTPQFLGLPEGVWAQEGGERNAGEGIV IGFVDTGINPSHPSFAYDLVNPFTSNISHFSGACETGPEFPPFSCNGKIVSAKLFSAG AQAAASLNASVDILSPSDTVGHGSHVASTAAGNAGVPVVVNGLYYGRASGMAPRARIA VYKAIYPTVGTLADVVAAIDQAVSDGVDILTLSIGLDEPPQDTVTFLSMFDIAMLFAR RAAIFVVQAAGNQGPGPSTVVSYSPWAVGAASSRIDRRYIGSLLLGNGQNISGVGLTA PSLGNGSVLYKLVLAKDAVNLKGAFPRTPPYVEECQYPEALDPNIVRGSIVICTFSAG FSNETSTLTAIIDTARTLGFMGFVLVANPSYGDFIAQPIPYSVSGTLIPKVADAKIVS QYYEQQTYRDAGGFVREFNARAAIGDGRVASFCGQAPIVSRFSSRGPDFIDINKDPAD VLKPDILAPGHEIWAAWSPMSALDPILSGYNFALLSGTSMAAPHVAGIAALIKQKYPS WTPSMIASAISTTASKFDNNGELIRAEGSDVGSLYSSTYFDSGAGFVSPSRAMDPGLV LSSEFEDYISFLCSIPNIDRFAIRAATGVWCSRSLGLPANLNLPSVTISALERSVTVR RSFKNVATKPETYVSLAIPPNGTTITLNPPWFAIAPEETQDLDIEINAIQSTNQFSFG EIILTGSLNHIVRIPLSIRPVSTV" gene complement(26577229..26580656) /locus_tag="TCM_030300" /note="dbxref CacaoGD:Thecc1EG030300" mRNA complement(join(26577229..26577705,26577935..26578016, 26578994..26579129,26579228..26579296,26579396..26579738, 26580179..26580442)) /locus_tag="TCM_030300" /product="PHD finger family protein / bromo-adjacent domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s01570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002152t2" /inference="similar to AA sequence:Phytozome:POPTR_0011s01570.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03839t00001_C1" mRNA complement(join(26577404..26577705,26578994..26579129, 26579228..26579296,26579396..26579738,26580179..26580656)) /locus_tag="TCM_030300" /product="PHD finger family protein / bromo-adjacent (BAH) domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s01570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002152t2" /inference="similar to AA sequence:Phytozome:POPTR_0011s01570.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8821t2; inference alignment:Newbler:10:TSA:cgbaP1_g03839t00001_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc195t4" CDS complement(join(26577650..26577705,26577935..26578016, 26578994..26579129,26579228..26579296,26579396..26579738, 26580179..26580278)) /locus_tag="TCM_030300" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002152t2" /codon_start=1 /product="PHD finger family protein / bromo-adjacent domain-containing protein isoform 1" /protein_id="EOY28800.1" /db_xref="Phytozome:POPTR_0011s01570.1" /db_xref="TAIR:AT4G22140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JL28" /translation="MAKTRPGLSATKPKPGKKDLDSYTIRGTNKVVRAGDCVLMRPSD TGKPPYVAQIEKIEVDSRNNVKVRVRWYYRPEESLGGRRQFHGVKELFLSDHYDVQSA HTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDD LMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSEDDVKRSQNGFHASPASDAKDW QCLLLVNTVIGTNMYPNILPGALADGGAQTKEEISEPWGNFVA" CDS complement(join(26577679..26577705,26578994..26579129, 26579228..26579296,26579396..26579738,26580179..26580278)) /locus_tag="TCM_030300" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002152t2" /codon_start=1 /product="PHD finger family protein / bromo-adjacent (BAH) domain-containing protein isoform 2" /protein_id="EOY28801.1" /db_xref="Phytozome:POPTR_0011s01570.1" /db_xref="TAIR:AT4G22140.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JL28" /translation="MAKTRPGLSATKPKPGKKDLDSYTIRGTNKVVRAGDCVLMRPSD TGKPPYVAQIEKIEVDSRNNVKVRVRWYYRPEESLGGRRQFHGVKELFLSDHYDVQSA HTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDD LMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSEDDVKRSQNGFHASPASDAKVE PKRRKR" mRNA complement(join(<26578030..26578054,26578994..26579129, 26579228..26579296,26579396..26579738,26580179..26580372)) /locus_tag="TCM_030300" /product="PHD finger family protein / bromo-adjacent domain-containing protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s01570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002152t2" /inference="similar to AA sequence:Phytozome:POPTR_0011s01570.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc195t4; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc195t4; inference alignment:Newbler:10:TSA:cgbaP1_g03839t00001_C1" CDS complement(join(<26578031..26578054,26578994..26579129, 26579228..26579296,26579396..26579738,26580179..26580278)) /locus_tag="TCM_030300" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG002152t2" /codon_start=1 /product="PHD finger family protein / bromo-adjacent domain-containing protein isoform 3" /protein_id="EOY28802.1" /db_xref="Phytozome:POPTR_0011s01570.1" /db_xref="TAIR:AT4G22140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JL28" /translation="MAKTRPGLSATKPKPGKKDLDSYTIRGTNKVVRAGDCVLMRPSD TGKPPYVAQIEKIEVDSRNNVKVRVRWYYRPEESLGGRRQFHGVKELFLSDHYDVQSA HTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDD LMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSEDDVKRSQNGFHASPASDAKCA RLLFPF" gene complement(26580937..26584721) /locus_tag="TCM_030301" /note="dbxref CacaoGD:Thecc1EG030301" mRNA complement(join(26580937..26581654,26581911..26582084, 26582258..26582377,26582468..26582575,26582859..26583007, 26583424..26583550,26583917..26583978,26584061..26584215, 26584566..26584627)) /locus_tag="TCM_030301" /product="Ribosomal protein L4/L1 family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s00660.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s00660.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08699t00001" mRNA complement(join(26581196..26581654,26581911..26582084, 26582258..26582377,26582468..26582575,26582859..26583007, 26583424..26583550,26583917..26583978,26584061..26584215, 26584579..26584721)) /locus_tag="TCM_030301" /product="Ribosomal protein L4/L1 family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s00660.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s00660.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b029306t1a2; alternateUTRof:Thecc1EG030301t1; inference alignment:Newbler:10:TSA:cgbaB_g08699t00001" mRNA complement(join(26581257..26581654,26581911..26582084, 26582258..26582377,26582468..26582575,26582859..26583007, 26583424..26583550,26583917..26583978,26584061..26584215, 26584566..26584585)) /locus_tag="TCM_030301" /product="Ribosomal protein L4/L1 family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s00660.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s00660.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08699t00001; alternateUTRof:Thecc1EG030301t1; inference alignment:Newbler:10:TSA:cgbaB_g08699t00001" CDS complement(join(26581553..26581654,26581911..26582084, 26582258..26582377,26582468..26582575,26582859..26583007, 26583424..26583550,26583917..26583978,26584061..26584166)) /locus_tag="TCM_030301" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ribosomal protein L4/L1 family isoform 1" /protein_id="EOY28803.1" /db_xref="Phytozome:POPTR_0004s00660.1" /db_xref="TAIR:AT2G20060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VY61" /translation="MALSISRRILRSFGSLSALARWDSLTIPSHSFQASDLNACISGD NLPHAECFSFSKGGLSFLACRKFATTILTPDSAESAFPSDLLSAKTVLTPDRTIGLYQ DLVIPVTNFHNEDKGLMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVS GTGRKPWRQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLNKKVRRLGLKIALSA SAAEGKLLVFEDLEVPTHKTKNIVNYVNQMEKTKKLLLVDGGPINEKLKLATQNLHYV NVLPSIGLNVYGILLHDTLVMSRDAVNRIVERMHTPINR" CDS complement(join(26581553..26581654,26581911..26582084, 26582258..26582377,26582468..26582575,26582859..26583007, 26583424..26583550,26583917..26583978,26584061..26584166)) /locus_tag="TCM_030301" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ribosomal protein L4/L1 family isoform 1" /protein_id="EOY28804.1" /db_xref="Phytozome:POPTR_0004s00660.1" /db_xref="TAIR:AT2G20060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VY61" /translation="MALSISRRILRSFGSLSALARWDSLTIPSHSFQASDLNACISGD NLPHAECFSFSKGGLSFLACRKFATTILTPDSAESAFPSDLLSAKTVLTPDRTIGLYQ DLVIPVTNFHNEDKGLMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVS GTGRKPWRQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLNKKVRRLGLKIALSA SAAEGKLLVFEDLEVPTHKTKNIVNYVNQMEKTKKLLLVDGGPINEKLKLATQNLHYV NVLPSIGLNVYGILLHDTLVMSRDAVNRIVERMHTPINR" CDS complement(join(26581553..26581654,26581911..26582084, 26582258..26582377,26582468..26582575,26582859..26583007, 26583424..26583550,26583917..26583978,26584061..26584166)) /locus_tag="TCM_030301" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ribosomal protein L4/L1 family isoform 1" /protein_id="EOY28805.1" /db_xref="Phytozome:POPTR_0004s00660.1" /db_xref="TAIR:AT2G20060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VY61" /translation="MALSISRRILRSFGSLSALARWDSLTIPSHSFQASDLNACISGD NLPHAECFSFSKGGLSFLACRKFATTILTPDSAESAFPSDLLSAKTVLTPDRTIGLYQ DLVIPVTNFHNEDKGLMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVS GTGRKPWRQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLNKKVRRLGLKIALSA SAAEGKLLVFEDLEVPTHKTKNIVNYVNQMEKTKKLLLVDGGPINEKLKLATQNLHYV NVLPSIGLNVYGILLHDTLVMSRDAVNRIVERMHTPINR" mobile_element complement(26585018..26585185) /note="source:CACAO_on_E22_A_scaffold_2 4861 5034" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(26585048..26585316) /note="source:scaffold_4_CACTA_0506 3292 3579" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26585722..26586198) /note="source:scaffold_8_CACTA_0855 1779 2349" /mobile_element_type="transposon:TIR/CACTA" gene complement(26586532..26592315) /locus_tag="TCM_030302" /note="dbxref CacaoGD:Thecc1EG030302" mRNA complement(join(26586532..26587232,26587765..26588009, 26590605..26590848,26591285..26591688)) /locus_tag="TCM_030302" /product="KNOX/ELK homeobox transcription factor isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003531" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034627t1" /inference="similar to AA sequence:ricco:29842.m003531" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc383t8_C1" mRNA complement(join(26586890..26587232,26587765..26588009, 26590605..26590848,26591285..26592315)) /locus_tag="TCM_030302" /product="KNOX/ELK homeobox transcription factor isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003531" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034627t1" /inference="similar to AA sequence:ricco:29842.m003531" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc98t9; alternateUTRof:Thecc1EG030302t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc383t8_C1" CDS complement(join(26587029..26587232,26587765..26588009, 26590605..26590848,26591285..26591662)) /locus_tag="TCM_030302" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003531; paralog of Thecc1EG034627t1" /codon_start=1 /product="KNOX/ELK homeobox transcription factor isoform 1" /protein_id="EOY28806.1" /db_xref="TAIR:AT1G62360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38874" /translation="MEGGSNSTSCMIAFGHNSHGLCPMTMMPLMTSHPHHQHHHHHPP NSDSNSLFLPLPPTNNQDQNHNSSSGSSMILDDHNNNNNSTNNNTGCYFMETNDGSSS SVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAATMGPSGTGCLGEDPA LDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFKALTVSSPSSACGEAADRNGS SEEEVDVNNNFIDPLAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLL DWWGRHYKWPYPSESQKIALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATH PHYYMDNVLGNPFPMDLSPTLL" CDS complement(join(26587029..26587232,26587765..26588009, 26590605..26590848,26591285..26591662)) /locus_tag="TCM_030302" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003531; paralog of Thecc1EG034627t1" /codon_start=1 /product="KNOX/ELK homeobox transcription factor isoform 1" /protein_id="EOY28807.1" /db_xref="TAIR:AT1G62360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38874" /translation="MEGGSNSTSCMIAFGHNSHGLCPMTMMPLMTSHPHHQHHHHHPP NSDSNSLFLPLPPTNNQDQNHNSSSGSSMILDDHNNNNNSTNNNTGCYFMETNDGSSS SVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAATMGPSGTGCLGEDPA LDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRVECQFKALTVSSPSSACGEAADRNGS SEEEVDVNNNFIDPLAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLL DWWGRHYKWPYPSESQKIALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATH PHYYMDNVLGNPFPMDLSPTLL" mobile_element 26595651..26596130 /note="source:CACAO_Again_on_S_E233_scaffold_7 1 514" /mobile_element_type="transposon:TIR/hAT" gene 26596433..26597154 /locus_tag="TCM_030303" /note="dbxref CacaoGD:Thecc1EG030303" mRNA 26596433..26597154 /locus_tag="TCM_030303" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.39 coverage" CDS 26596874..26597086 /locus_tag="TCM_030303" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28808.1" /translation="MTINRMIMIRIMGSTCRAILGNSPLEKQLAFQISPSPHKEKYPT MHPYHSKAKQIFSRSWMTLGLLRMWI" gene complement(26597894..26600908) /locus_tag="TCM_030304" /note="dbxref CacaoGD:Thecc1EG030304" mRNA complement(join(26597894..26598300,26598433..26598528, 26598747..26599032,26600515..26600908)) /locus_tag="TCM_030304" /product="Plant UBX domain containing protein 4" /inference="alignment:exonerate- protein:2:ricco:29842.m003530" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002153t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s01620.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17050t1" CDS complement(join(26597914..26598300,26598433..26598528, 26598747..26599032,26600515..26600666)) /locus_tag="TCM_030304" /note="paralog of Thecc1EG002153t1" /codon_start=1 /product="Plant UBX domain containing protein 4" /protein_id="EOY28809.1" /db_xref="Phytozome:POPTR_0011s01620.1" /db_xref="TAIR:AT4G04210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWU7" /translation="MASRDKKPAKPSSSSRAGGIRTLSDLNRRSGPDSDSDSDSPQEY YTGGEKSGMLVQDPSKNNDVDEIFNQARQLGAVEGPLEHLRPSSSSRSFTGTGRLLSG ETVPTAPQQPESVIHNIVFWSNGFTVNDGPLRRLDDPDNASFLESIRKSECPKELEPA DRRSAVHVNLIRRDENCPEPEKQRHVAFQGVGRTLGSSSSTSAAPEPTISSTPLNTPP NPTPAVVVDESLPSTSIQLRLADGTRMIAQFNFHQTVDDIRAFINASRPGSAINYQLQ IMGFPPKLLTDPTQTIEQAGLANSVVIQKL" gene 26601616..26602420 /locus_tag="TCM_030305" /note="dbxref CacaoGD:Thecc1EG030305" mRNA join(26601616..26602140,26602229..26602420) /locus_tag="TCM_030305" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s01630.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s01630.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b029310t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g10569t00001" mRNA join(26601693..26602146,26602229..26602418) /locus_tag="TCM_030305" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s01630.1" /inference="similar to AA sequence:Phytozome:GSVIVT01004816001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g10569t00001" CDS join(26601695..26602146,26602229..26602277) /locus_tag="TCM_030305" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY28810.1" /db_xref="Phytozome:GSVIVT01004816001" /translation="MADPNARAGLNGTGSSGENRLKYNFDAGFLSNARPSDTQNPDEE DSNDPPSLDSDSCDSECQSTPLADLSASLRVFSDSMLRMELAGMEMVKAMEASRCEAE KRRTESEAELTRMMLRTQSQIASFIAGDNRKRKRVEEDEQPRDFSVRYRQGALLLSLL QCNLIF" CDS join(26601695..26602140,26602229..26602277) /locus_tag="TCM_030305" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY28811.1" /db_xref="Phytozome:POPTR_0011s01630.1" /translation="MADPNARAGLNGTGSSGENRLKYNFDAGFLSNARPSDTQNPDEE DSNDPPSLDSDSCDSECQSTPLADLSASLRVFSDSMLRMELAGMEMVKAMEASRCEAE KRRTESEAELTRMMLRTQSQIASFIAGDNRKRKRVEEDEQPRDFSVRQGALLLSLLQC NLIF" mobile_element complement(26603738..26603829) /note="source:scaffold_2_CACTA_0282 5388 5494" /mobile_element_type="transposon:TIR/CACTA" gene complement(26604900..26606473) /locus_tag="TCM_030306" /note="dbxref CacaoGD:Thecc1EG030306" mRNA complement(join(26604900..26605063,26605165..26605225, 26605425..26605653,26606271..26606473)) /locus_tag="TCM_030306" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2985t4" CDS complement(join(26605019..26605063,26605165..26605225, 26605425..26605549)) /locus_tag="TCM_030306" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28812.1" /translation="MLMSLSLHFVGGLMAVDVDVEVCGFLSHSELCEICELARLRGGT SLPYLTTLKVCELAKQAGLIQGQVQKECHGST" mobile_element 26606501..26606709 /note="source:CACAO_PIF_E119_scaffold_3 2315 2521" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26606809..26606875 /note="source:CACAO_PIF_E119_scaffold_3 2419 2491" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(26607239..26612889) /locus_tag="TCM_030307" /note="dbxref CacaoGD:Thecc1EG030307" mRNA complement(join(26607239..26608151,26608248..26608308, 26608624..26608746,26608832..26608914,26609510..26609587, 26609729..26609860,26610069..26610112,26610206..26610330, 26610484..26610755,26610869..26611013,26611121..26611251, 26611495..26611656,26611940..26612088,26612575..26612838)) /locus_tag="TCM_030307" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003529" /inference="similar to AA sequence:Phytozome:POPTR_0004s00570.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05151t00001" CDS complement(join(26607972..26608151,26608248..26608308, 26608624..26608746,26608832..26608914,26609510..26609587, 26609729..26609860,26610069..26610112,26610206..26610330, 26610484..26610755,26610869..26611013,26611121..26611251, 26611495..26611656,26611940..26612088,26612575..26612692)) /locus_tag="TCM_030307" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY28813.1" /db_xref="Phytozome:POPTR_0004s00570.1" /db_xref="TAIR:AT4G04180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TR79" /translation="MVVLERLARTARSWRKIASPKILTPSRASSRDLPSALYHRSSGC LKCILDTQQLRLAAASSGSYSMLPAVLAGLLGAGVLETAYAEADEVAAKPPLPSETPA SHVNLEETAKKERQRIEQLLKDKGMKSGSYPRFTVAIKGQKVTIKFQIPPSCEVAQLI ANLVSNLGLKVEERGGGSDMLLRAWDSSVAWQLTLNPLEKQKETGVNEGHSVDRNGDG GNLCILIFHSLISSDKAEIEFLKQGSLNPNELDALVSVLQLAGGKLGQSKSRVGKPRE GSSQMPSAEKSIASLEAMGVRIYGLDAPHQNSSYSEISWDNIAGYDQQKREIEDTILL ALNSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLE VVMSKYYGESERLMGQVFSLANQLPDGAIVFLDEVDAFAIARDGEIHEATRRVLSVLL RQIDGFEQDKKVVVIAATNRKQDLDPALISRFDAMIGFGLPDEQNRQEIAAQYAKHLT ESELIELARVTDEMSGRDIRDACQQAERSWASKLIRGQATKNEEQKSLPPLEEYIKSA MNRRKALLSVAEQRNHNSNLRTKKPHLDYGVLID" mRNA complement(join(<26608283..26608358,26608624..26608746, 26608832..26608914,26609510..26609587,26609729..26609860, 26610069..26610112,26610206..26610330,26610484..26610755, 26610869..26611013,26611121..26611251,26611495..26611656, 26611940..26612088,26612575..26612889)) /locus_tag="TCM_030307" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29842.m003529" /inference="similar to AA sequence:Phytozome:POPTR_0004s00570.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc55t1; inference alignment:Newbler:10:TSA:cgbaB_g05151t00001" mRNA complement(join(26608283..26608308,26608624..26608914, 26609510..26609587,26609729..26609860,26610069..26610112, 26610206..26610330,26610484..26610755,26610869..26611013, 26611121..26611251,26611495..26611656,26611940..26612088, 26612575..26612889)) /locus_tag="TCM_030307" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29842.m003529" /inference="similar to AA sequence:ricco:29842.m003529" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc55t3; inference alignment:Newbler:10:TSA:cgbaB_g05151t00001" CDS complement(join(<26608283..26608358,26608624..26608746, 26608832..26608914,26609510..26609587,26609729..26609860, 26610069..26610112,26610206..26610330,26610484..26610755, 26610869..26611013,26611121..26611251,26611495..26611656, 26611940..26612088,26612575..26612692)) /locus_tag="TCM_030307" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY28814.1" /db_xref="Phytozome:POPTR_0004s00570.1" /db_xref="TAIR:AT4G04180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TR79" /translation="MVVLERLARTARSWRKIASPKILTPSRASSRDLPSALYHRSSGC LKCILDTQQLRLAAASSGSYSMLPAVLAGLLGAGVLETAYAEADEVAAKPPLPSETPA SHVNLEETAKKERQRIEQLLKDKGMKSGSYPRFTVAIKGQKVTIKFQIPPSCEVAQLI ANLVSNLGLKVEERGGGSDMLLRAWDSSVAWQLTLNPLEKQKETGVNEGHSVDRNGDG GNLCILIFHSLISSDKAEIEFLKQGSLNPNELDALVSVLQLAGGKLGQSKSRVGKPRE GSSQMPSAEKSIASLEAMGVRIYGLDAPHQNSSYSEISWDNIAGYDQQKREIEDTILL ALNSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLE VVMSKYYGESERLMGQVFSLANQLPDGAIVFLDEVDAFAIARDGEIHEATRRVLSVLL RQIDGFEQDKKVVVIAATNRKQDLDPALISRFDAMIGFGLPDEQNRQEIAAQYAKHLT ESELIELARVTDEISCFSLFTEHCHLAYPECLGGTSVM" mRNA complement(join(<26608385..26608410,26608624..26608746, 26608832..26608914,26609510..26609587,26609729..26609860, 26610069..26610112,26610206..26610330,26610484..26610755, 26610869..26611013,26611121..26611251,26611495..26611656, 26611940..26612088,26612575..26612889)) /locus_tag="TCM_030307" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29842.m003529" /inference="similar to AA sequence:Phytozome:POPTR_0004s00570.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc55t2; inference alignment:Newbler:10:TSA:cgbaB_g05151t00001" CDS complement(join(<26608386..26608410,26608624..26608746, 26608832..26608914,26609510..26609587,26609729..26609860, 26610069..26610112,26610206..26610330,26610484..26610755, 26610869..26611013,26611121..26611251,26611495..26611656, 26611940..26612088,26612575..26612692)) /locus_tag="TCM_030307" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /protein_id="EOY28815.1" /db_xref="Phytozome:POPTR_0004s00570.1" /db_xref="TAIR:AT4G04180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TR79" /translation="MVVLERLARTARSWRKIASPKILTPSRASSRDLPSALYHRSSGC LKCILDTQQLRLAAASSGSYSMLPAVLAGLLGAGVLETAYAEADEVAAKPPLPSETPA SHVNLEETAKKERQRIEQLLKDKGMKSGSYPRFTVAIKGQKVTIKFQIPPSCEVAQLI ANLVSNLGLKVEERGGGSDMLLRAWDSSVAWQLTLNPLEKQKETGVNEGHSVDRNGDG GNLCILIFHSLISSDKAEIEFLKQGSLNPNELDALVSVLQLAGGKLGQSKSRVGKPRE GSSQMPSAEKSIASLEAMGVRIYGLDAPHQNSSYSEISWDNIAGYDQQKREIEDTILL ALNSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLE VVMSKYYGESERLMGQVFSLANQLPDGAIVFLDEVDAFAIARDGEIHEATRRVLSVLL RQIDGFEQDKKVVVIAATNRKQDLDPALISRFDAMIGFGLPDEQNRQEIAAQYAKHLT ESELIELARVTDDIPFLCLFL" CDS complement(join(26608783..26608914,26609510..26609587, 26609729..26609860,26610069..26610112,26610206..26610330, 26610484..26610755,26610869..26611013,26611121..26611251, 26611495..26611656,26611940..26612088,26612575..26612692)) /locus_tag="TCM_030307" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29842.m003529" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 4" /protein_id="EOY28816.1" /db_xref="TAIR:AT4G04180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TR79" /translation="MVVLERLARTARSWRKIASPKILTPSRASSRDLPSALYHRSSGC LKCILDTQQLRLAAASSGSYSMLPAVLAGLLGAGVLETAYAEADEVAAKPPLPSETPA SHVNLEETAKKERQRIEQLLKDKGMKSGSYPRFTVAIKGQKVTIKFQIPPSCEVAQLI ANLVSNLGLKVEERGGGSDMLLRAWDSSVAWQLTLNPLEKQKETGVNEGHSVDRNGDG GNLCILIFHSLISSDKAEIEFLKQGSLNPNELDALVSVLQLAGGKLGQSKSRVGKPRE GSSQMPSAEKSIASLEAMGVRIYGLDAPHQNSSYSEISWDNIAGYDQQKREIEDTILL ALNSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLE VVMSKYYGESERLMGQVFSLANQLPDGAIVFLDEVDAFAIARDGEIHEATRRVLSVLL RQIDGFEQDKKVVVIAATNRKQDLDPALIRYEDAVSHAEANYTLS" mobile_element 26613626..26613687 /note="source:scaffold_3_CACTA_0382 1840 1902" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26613788..26613866) /note="source:scaffold_6_CACTA_0706 1420 1500" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26613800..26613913 /note="source:CACAO_M_S_E14849_F156_scaffold_2 684 797" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26613867..26613963) /note="source:CACAO_M_S_E5162_F13_scaffold_1 5161 5247" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26614704..26616086) /locus_tag="TCM_030308" /note="dbxref CacaoGD:Thecc1EG030308" mRNA complement(26614704..26616086) /locus_tag="TCM_030308" /product="Serine/arginine repetitive matrix protein 2, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s01960.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s00560.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9315t1" CDS complement(26614905..26615960) /locus_tag="TCM_030308" /codon_start=1 /product="Serine/arginine repetitive matrix protein 2, putative" /protein_id="EOY28817.1" /db_xref="Phytozome:POPTR_0004s00560.1" /db_xref="TAIR:AT4G22190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PCS4" /translation="METQRSVNNKEARNLSPCSSGRRSSTSSHSSSPEFEFWMVRNPS FPQPDLISADELFVNGVLLPLHLIPNKQPEESPRPEPNSSASEPPVPDPEPEPGPLIT SEPITVLSASKRWRDIFKKEKGKNGAKHQEDKDKEKEKEKEKKKEKKSQSQSGASPAE LNINIWPFSRSRSSGTSGTRPRMTAGAAGTRKVSSAPCSRSNSAGESKSRKWPSSPSR AGVHLGRSSPVWQVRRGGSGVRTFDVSSRSAEKSGSKKEVTETRCGKIAPSNGGNGNK AKVLNLNVPMCIGYRHHLSCRTDENSAMLAGVSDDCNGSRSGSGGNGANGRSSGPNVG SGSNFFNLRNLFTKKVY" gene 26617521..26621385 /locus_tag="TCM_030309" /note="dbxref CacaoGD:Thecc1EG030309" mRNA join(26617521..26617758,26618063..26618133, 26618435..26618481,26618578..26618676,26620908..26621385) /locus_tag="TCM_030309" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is weak, protein is complete; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc5696t1" CDS join(26617751..26617758,26618063..26618133, 26618435..26618481,26618578..26618676,26620908..26621024) /locus_tag="TCM_030309" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28818.1" /translation="MASCACTLLALWRQRVLIDDPVLSWLGSRAFSSSSSVAIFALVG GARVPPQQHPTTKSTMANWHCAYDEDAPNGQLPPRSPMGKWQGRETKAAMFLYRIWLI AQGPWASLFFL" gene complement(26621600..26627193) /locus_tag="TCM_030310" /note="dbxref CacaoGD:Thecc1EG030310" mRNA complement(join(26621600..26622651,26622749..26622817, 26622948..26622992,26623365..26623449,26623598..26623709, 26623808..26623923,26624028..26624198,26624351..26624482, 26624741..26624829,26625045..26625108,26625259..26625364, 26625468..26625574,26625657..26625710,26626069..26626190, 26626302..26626463,26626644..26626916)) /locus_tag="TCM_030310" /product="Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g01050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002156t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s02000.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04674t00001" mRNA complement(join(26622459..26622817,26622948..26622994, 26623103..26623113,26623351..26623449,26623576..26623709, 26623808..26623923,26624028..26624198,26624351..26624482, 26624741..26624829,26625045..26625108,26625259..26625364, 26625468..26625574,26625657..26625710,26626069..26626190, 26626302..26626463,26626644..26627193)) /locus_tag="TCM_030310" /product="Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g01050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002156t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s02000.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc62t8; inference alignment:Newbler:10:TSA:cgbaP2_g04674t00001" CDS complement(join(26622575..26622651,26622749..26622817, 26622948..26622992,26623365..26623449,26623598..26623709, 26623808..26623923,26624028..26624198,26624351..26624482, 26624741..26624829,26625045..26625108,26625259..26625364, 26625468..26625574,26625657..26625710,26626069..26626190, 26626302..26626463,26626644..26626836)) /locus_tag="TCM_030310" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002156t1" /codon_start=1 /product="Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta isoform 1" /protein_id="EOY28819.1" /db_xref="Phytozome:POPTR_0011s02000.1" /db_xref="TAIR:AT1G12000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q41141" /translation="MSPSLVTNNGDVATVKTAPVAGRLAAVYSEVQTSRIDHALPLPS VLRNPFKIVDGPPSSAAGNPDEIAKLFPNLFGQPSAMLVPNGADSIGSDQKLKIGVVL SGGQAPGGHNVISGIFDYLQDCAKGSILYGFRGGPAGIMKCKYVELTADYIYPYRNQG GFDMICSGRDKIETPEQFKQAEETAVKLDLDGLLVIGGDDSNTNACLLAENFRTKNLK TQVIGCPKTIDGDLKCKEVPTSFGFDTACRIYAEMIGNVMIDARSTGKYYHFVRLMGR AASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDVVCKRAELGYNYGVILIP EGLIDFIPEVQQLIAELNEILAHDIVDENGLWKKKLTDQSLKLFEFLPQAIQEQLMLE RDPHGNVQVAKIETEKMLIQMVETELDTRKQAGSYKGQFKGQSHFFGYEGRCGLPTNF DASYCYALGYGAGALLHSGKTGLISSVGNLGTPVEEWTVGGTALTSLMDVERRHGKFK PVIKKAMVELEGAPFKKFSSMREEWALKNCYISPGPIQFVGPVSNAVNHTLLLELGAQ A" CDS complement(join(26623424..26623449,26623576..26623709, 26623808..26623923,26624028..26624198,26624351..26624482, 26624741..26624829,26625045..26625108,26625259..26625364, 26625468..26625574,26625657..26625710,26626069..26626190, 26626302..26626463,26626644..26626836)) /locus_tag="TCM_030310" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002156t1" /codon_start=1 /product="Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta isoform 2" /protein_id="EOY28820.1" /db_xref="Phytozome:POPTR_0011s02000.1" /db_xref="TAIR:AT1G12000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q41141" /translation="MSPSLVTNNGDVATVKTAPVAGRLAAVYSEVQTSRIDHALPLPS VLRNPFKIVDGPPSSAAGNPDEIAKLFPNLFGQPSAMLVPNGADSIGSDQKLKIGVVL SGGQAPGGHNVISGIFDYLQDCAKGSILYGFRGGPAGIMKCKYVELTADYIYPYRNQG GFDMICSGRDKIETPEQFKQAEETAVKLDLDGLLVIGGDDSNTNACLLAENFRTKNLK TQVIGCPKTIDGDLKCKEVPTSFGFDTACRIYAEMIGNVMIDARSTGKYYHFVRLMGR AASHITLECALQTHPNITIIGEEVAAKKQTLKNVTDYIVDVVCKRAELGYNYGVILIP EGLIDFIPEVQQLIAELNEILAHDIVDENGLWKKKLTDQSLKLFEFLPQAIQEQLMLE RDPHGNVQVAKIETEKMLIQMVETELDTRKQAGSYKGQFKGQSHFFGYEGRCGLPTNF DASYCYALGYGAGALLHSGKTGLISSVCFLLFLCRKFGYPS" gene 26627732..26630982 /locus_tag="TCM_030311" /note="dbxref CacaoGD:Thecc1EG030311" mRNA join(26627732..26627927,26628513..26628708, 26628785..26628861,26629217..26629297,26629388..26629466, 26629565..26629747,26629831..26630294,26630755..26630982) /locus_tag="TCM_030311" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s00540.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s00540.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1548t1" CDS join(26627772..26627927,26628513..26628708, 26628785..26628861,26629217..26629297,26629388..26629466, 26629565..26629747,26629831..26630294,26630755..26630769) /locus_tag="TCM_030311" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28821.1" /db_xref="Phytozome:POPTR_0004s00540.1" /translation="MNVESLLELGCHGLGSSREENPKKWTSCPILLSWSQHIGAYLSV VELVTWVKNSPSPTDRQRPLNLKAKTCYCTFSVLYPVALSSFLYRELCKSHDFDEHPK SLKFFSLFLFPGSLENDHHSNMCHCGVVNTQISSINFLVIKQPSFVYHQNLDPSHGAV LSFPITVSDQGRSSSHWLSKVLEVQLVLTRADSHRACFMEPVLSILTETLMTRPPNTT SIKDSSIKDIYIMITSSFNNGNVPQLPSNLTLPTTPSLLHFPSKIHASCLKMKASKEH KKQKLQQRGCRALCCSCRLSVSSSEEAESSNSDRFASISSLAHAMVQERLDQMIRERQ ETRHIERRRQRSEGTKFVVMVAMEKCSYDPREDFRESMVEMIMANRIQEPKDLRSLLN YYVSMNSEEYHGIILEVFHQGRIA" gene complement(26630912..26634726) /locus_tag="TCM_030312" /note="dbxref CacaoGD:Thecc1EG030312" mRNA complement(join(26630912..26631687,26631804..26632014, 26632142..26632650,26632782..26632955,26633096..26633248, 26633450..26634174,26634613..26634726)) /locus_tag="TCM_030312" /product="Ankyrin repeat family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s05700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030313t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8835t1" CDS complement(join(26631260..26631687,26631804..26632014, 26632142..26632650,26632782..26632955,26633096..26633248, 26633450..26634032)) /locus_tag="TCM_030312" /note="paralog of Thecc1EG030313t1" /codon_start=1 /product="Ankyrin repeat family protein, putative" /protein_id="EOY28822.1" /db_xref="TAIR:AT3G18670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZE9" /translation="MEKEIDTQTEMATVFEHTRMPYESALQDDAPSLKNFYSCRPDDT LFMPITAGKDTVFHIAAYRGSEELLRVLLEMVPPSRKRDVLKLKNIHGNTILHEVAVS GKVKAADFLVRTLLLPHGSSTVHEKDIREREEILADRNNLGETPLYRAAAFGSAKMVM YLAKEIEEVGTLHDHFKRNDGISILHIAVIYQNFDSAIWLLNKDPNLASYKMEKDGKT CLHLLASMPTAFRSTSRKNIFTEFLYDRLPDSLGDDDDDDDDKFNPLISSIRTQDLER GRGQPSKISDTSFRMRMYRRLWRCLAKGWKTIEKLWTKKKMNTSAVKLMGMLVRRDAS WLEPHEAEEDNLICLDREEEDMEAAPSAKRRSRLPDTPLLTAARTGIQEIVKEILEVY PQAVEHVNQNGQNILHLAILHRHSHIFDLVNQKKEASHRLVLGIDNYGCTILHYTAVM EYYTGGTSTTVALKLQEELKWFKDVQHRIPLYYTMHRNKENLTAKESFNKKHGDQHKA AQEWVKNTSQSCSTVAVLVATVVFAAAYTAPGGYLANGKPLLLDRPLYSFFTVMDVAG LASSLTSVVVFLSVLTSSLEIDDFLRTLPRKLMLGFIFLFFSVTATMLSFTATILLLI HLEKKWTATLTYAAAFLPICVFAMFQFPLYYEYTVAAIRSIVDFIQAILPGNWDLDRF RPN" gene complement(26634764..26637966) /locus_tag="TCM_030313" /note="dbxref CacaoGD:Thecc1EG030313" mRNA complement(join(26634764..26635425,26635509..26635719, 26635808..26636352,26636442..26636483,26636717..26636833, 26636955..26637104,26637198..26637966)) /locus_tag="TCM_030313" /product="Ankyrin repeat family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g16010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030312t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s00520.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc3494t1" CDS complement(join(26634998..26635425,26635509..26635719, 26635808..26636352,26636442..26636483,26636717..26636833, 26636955..26637104,26637198..26637783)) /locus_tag="TCM_030313" /note="paralog of Thecc1EG030312t1" /codon_start=1 /product="Ankyrin repeat family protein, putative" /protein_id="EOY28823.1" /db_xref="Phytozome:POPTR_0004s00520.1" /db_xref="TAIR:AT3G18670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZE9" /translation="MEKEIAIASETERVEDIGLPYGKALQGDARGLRRFYQDKPADAL FDPITAYKDTVFHIAAQRKGSKEALRVLLRMVPQTRRLELLKMKNIQGNTILHEVAST GNVEDADSLITKLSSSKVPTVADELETGEIRKQILGVRNNLGETPLFRAAEFGNTEMV KYLVQQAEEIGNLHDHYRRDDGVTILHSAVIGQHFETAIWLLNKDQQLATYKDRNGKT ILHLLAKMPTAFKSTTPMIRLKAFIYNCFPSHSDDDNEAGLLSSSQNNDLEYDKLSEI HHLLKRYVDSKMNQTICKYLAKGWVTLGDIWTSKKTHTLAVKLVEKLMRADASLCVAL AHTPEQDSTICLEGEVKEEAETKTEEGSTNLALSERRSKSPDTPLLIAASTGIMEIVR LILERYPQAVELVNQNGQNILHVSILHRQFNIYELVKKEKKEAVKRLVLGIDNDGYTI LHHAAVTTYYHGGSKPTPALQLQEELTWFKNVEKRIPHPYTMHRNKENHTAKELFDKQ HEEQLKQAQEWVKNTCQSSSTVAVLIAGVVFAAAYTAPGGFHAQSGRPVLLTTEKPLY SFFTVMDIAGLASSLTAVVVFLSILTSSLEQQQFARTIPRKMSIGFTSLFFSVTATIL TFTATIFLVVHLEKKWTTSLTYAAALLPICVFALFQFPLYYLFFQAAVTSILDFMKKI LPGSWTSSND" gene complement(26638026..26641896) /locus_tag="TCM_030314" /note="dbxref CacaoGD:Thecc1EG030314" mRNA complement(join(26638026..26639412,26639518..26639731, 26639822..26640333,26640421..26640462,26640552..26640671, 26640794..26640946,26641042..26641052,26641145..26641896)) /locus_tag="TCM_030314" /product="Ankyrin repeat family protein, putative" /inference="alignment:exonerate- protein:2:ricco:28644.m000911" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030312t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8833t1" CDS complement(join(26638988..26639412,26639518..26639731, 26639822..26640333,26640421..26640462,26640552..26640671, 26640794..26640946,26641042..26641052,26641145..26641617)) /locus_tag="TCM_030314" /note="paralog of Thecc1EG030312t1" /codon_start=1 /product="Ankyrin repeat family protein, putative" /protein_id="EOY28824.1" /db_xref="TAIR:AT3G18670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZE9" /translation="MAIEVDISRPEMRIFYEMRDAYAKVLKNDAQGLKGIYQTNPDAL FNRITACRDTIFHIAAYRGSEEVLQVLVQMVPRPKKRELLKMKNIYGNTILHEVATSA SLKAADLLIRELLFSDGISDDERDIRERGEILADRNKLGETPFFRAVEYGNKTMVIQH FETAIWLLEKDKELAAYKDKNGKTSLHILAGMATAFQSGSPITRILKKAIYYCLPSDP GKEDESDQLPSNQQNKDLEHGDPSKGLNQSDRSKGFKLYCAIWRCLAKGWTMIDHLWS QKKMHVSAVKLAKMLVGTDASWFEPHEPEEDDTICLERKEKEEERVKGAAARKESDEP DTPLFIAASTGIREIVNEILNVYPQAVEHISKTGQNILHVAIMHRKYEVFEVVKSKEE AKRLVRGIDNDGCTILHHAAETKYYQGGTKPTPALKLQQELTWFEKVKNQIPSHFTMH RNKRNVTADQLFKDMHQEQLKTAQDWVKNTSQSCSTVAVLVATVVFAAAYTAPGGFLQ DGRPILLEKPLYSFFTVMDVAGLASSLTSVVIFLSILTSSLEFEDFRHTLPRNLSLGF TFLFFSVTSTMLTFTATILLLIHLEKKWTASLTYAAAFLPICVFALFQFPLYYEYFVA AVKSIFDFFRRNLPGNWEFLQIKDD" gene complement(26642419..26645798) /locus_tag="TCM_030315" /note="dbxref CacaoGD:Thecc1EG030315" mRNA complement(join(26642419..26642986,26643434..26643629, 26643847..26643900,26644905..26645419,26645520..26645798)) /locus_tag="TCM_030315" /product="Plastid-lipid associated protein PAP / fibrillin family protein" /inference="alignment:exonerate-protein:2:frave:gene19518" /inference="similar to AA sequence:ricco:29738.m001051" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17054t2" CDS complement(join(26642672..26642986,26643434..26643629, 26643847..26643900,26644905..26645419,26645520..26645723)) /locus_tag="TCM_030315" /note="dbxref ricco:29738.m001051" /codon_start=1 /product="Plastid-lipid associated protein PAP / fibrillin family protein" /protein_id="EOY28825.1" /db_xref="TAIR:AT4G22240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81439" /translation="MQSALTKLLNSIRTPIPSQPHTLFVGFVLERKESTHPRVKNMDR RDIKSRIKWSLSFVFDSCLVIALVFFHLENPKKTMATVSQLNQFPCKTFLSTPRSRNL ASKPSILPQNSTKPTQNLIKKSQFFTLKAVRERPVFQVRAVYDDEYGPDKAEEEEEEQ PVTESPAVAVAEEEKPKEVSEVDSLKKALVDSFYGTNRGLKATSETRAEIVELITQLE AKNPTPAPTEALTLLNGKWILAVKLPVSSLLVFCLDVAIKYTSFPGLFPLLSRGQLPL VKVEEISQTIDAESFTVQNSVQFSGPLASNTISTNAKFEVRSPKRVQIKFQEGIIGTP QLTDSIVLPENVEFLGQRFDLTPVKGLLTSVQDTASSVAKTISSQPPLKFSLSNSNAE SWLLTTYLDEELRISRGDAGSVFVLIKEGSALLTP" gene 26646081..26648299 /locus_tag="TCM_030317" /note="dbxref CacaoGD:Thecc1EG030317" mRNA 26646081..26648299 /locus_tag="TCM_030317" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s03960.1" /inference="similar to AA sequence:Phytozome:POPTR_0018s03960.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1529t1" CDS 26646615..26648015 /locus_tag="TCM_030317" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY28826.1" /db_xref="Phytozome:POPTR_0018s03960.1" /db_xref="TAIR:AT1G10330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA20" /translation="MSSESLLQHLQRFIQRPNQIKQIHSLLITGGLLLHNHYSTASKW KTTLLYNTLIRAYLNVKPFHHSLLLFTRMLGHQTPPNSHTFPSLFKAAAAASLSLASL TCAPLHAQALKRGVLSDPFVQTSLLGVYAKLGRLSNASKVFEEIFNPCIVACNAMLDA FGRNGDMGSALLLFESMIEKDVVSWTSVINGFARSKQFKEAIRVFENMMEFWVKPNEA TYVNVLSCCANSEGGGSLYQGKQIHGYMLRNEVVMTVYMGTALIDFYGKKGCSETAVR VFNQMLVREVFTWNAMISSLACNGREEKALDMFEKMKVEGVCPNEVTLVAVLTACART KRVELGSELFQSMYCQYGIVPMMEHYGCMVDLLGRAGLLTEATEFIGSMPFQPDASVL GALLNACKIHGAIELGNEVGRKLLELQPRHCGLYVALSSINADLERWDRAADLRKALV EARIRKVPAYSLISSM" gene 26649501..26650973 /locus_tag="TCM_030318" /note="dbxref CacaoGD:Thecc1EG030318" mRNA join(26649501..26649688,26649910..26650666) /locus_tag="TCM_030318" /product="RING/U-box superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400041626" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002176t1" /inference="similar to AA sequence:frave:gene19519" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8842t1" mRNA join(26649659..26649688,26649897..26650973) /locus_tag="TCM_030318" /product="RING/U-box superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400041626" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002176t1" /inference="similar to AA sequence:frave:gene19519" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc910t1; alternateUTRof:Thecc1EG030318t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8842t1" CDS 26649967..26650584 /locus_tag="TCM_030318" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene19519; paralog of Thecc1EG002176t1" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 1" /protein_id="EOY28827.1" /db_xref="TAIR:AT4G03965.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5XV87" /translation="MDGVDRERRRRSFKERLGFKIVGCCGATWGLGSTTISVRDDDEV EVVEEEEADQQREQVEATHSGHNPDPGCINPSPVSSGMNLAAALAAERHFRAAQEPEG GNAAPTSDGQSNAGLRSPGTPLRVSLMRLLEEADGFCGGGEQEKGGVEMGSDSMCCVC MGKKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF" CDS 26649967..26650584 /locus_tag="TCM_030318" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene19519; paralog of Thecc1EG002176t1" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 1" /protein_id="EOY28828.1" /db_xref="TAIR:AT4G03965.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5XV87" /translation="MDGVDRERRRRSFKERLGFKIVGCCGATWGLGSTTISVRDDDEV EVVEEEEADQQREQVEATHSGHNPDPGCINPSPVSSGMNLAAALAAERHFRAAQEPEG GNAAPTSDGQSNAGLRSPGTPLRVSLMRLLEEADGFCGGGEQEKGGVEMGSDSMCCVC MGKKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF" mobile_element 26655074..26655131 /note="source:INTACT595_F266_scaffold_7-int 1046 1101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26655460..26655523 /note="source:CACAO_M_S_E33074_F3_scaffold_4 1015 1072" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 26656975..26658740 /locus_tag="TCM_030320" /note="dbxref CacaoGD:Thecc1EG030320" mRNA join(26656975..26657150,26657233..26657459, 26657565..26657898,26658193..26658740) /locus_tag="TCM_030320" /product="Ethylene-forming enzyme" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s00970.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002179t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s00970.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17176t1" CDS join(26657043..26657150,26657233..26657459, 26657565..26657898,26658193..26658483) /locus_tag="TCM_030320" /note="paralog of Thecc1EG002179t1" /codon_start=1 /product="Ethylene-forming enzyme" /protein_id="EOY28829.1" /db_xref="Phytozome:POPTR_0011s00970.1" /db_xref="TAIR:AT1G05010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q06588" /translation="METTFPVIDFSKLDGEERGATMEMIKDACENWGFFELMNHGISH ELLDTVERLTKEHYRKCMEQRFKEMVASKGLEAVQFEINDLDWESTFFLRHLPESNIS EIPDLEEEYRKVMKEFAVELEKLAEQLLNLLCENLGLEKGYLKNVFYGSRGPTFGTKV SNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMKHSIVINL GDQVEVITNGKYKSVLHRVIAQTDGTRMSIASFYNPGSDAVIYPAPALLEKEAETSQL YPKFVFEDYMKLYAGLKFQAKEPRFEAMKTMESAVKLGPIATV" gene complement(26658805..26660076) /locus_tag="TCM_030321" /note="dbxref CacaoGD:Thecc1EG030321" mRNA complement(26658805..26660076) /locus_tag="TCM_030321" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.37 coverage" CDS complement(26659648..26659962) /locus_tag="TCM_030321" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28830.1" /translation="MDILNSVQFTHSYRLPQNLLSLPLVHQWLILSCIMSLCFGASCN LGVPRSTVLAPTEHIACFISYLFFFPIDTGKPAHVWLLLLTDWFCYYVVVSVMKLEEL EF" gene complement(26660878..26663016) /locus_tag="TCM_030322" /note="dbxref CacaoGD:Thecc1EG030322" mRNA complement(join(26660878..26661315,26661415..26661458, 26661541..26661598,26662473..26662566,26662672..26663016)) /locus_tag="TCM_030322" /product="Phosphotyrosine protein phosphatases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007270001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002183t1" /inference="similar to AA sequence:Phytozome:Glyma02g43550.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17064t2" CDS complement(join(26661130..26661315,26661415..26661458, 26661541..26661598,26662473..26662566,26662672..26662889)) /locus_tag="TCM_030322" /note="paralog of Thecc1EG002183t1" /codon_start=1 /product="Phosphotyrosine protein phosphatases superfamily protein" /protein_id="EOY28831.1" /db_xref="Phytozome:Glyma02g43550.1" /db_xref="TAIR:AT1G05000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVN4" /translation="MRVEGFDGEISEAIEVSQPRTPPDVGDDSEKDGEELFVPPLNFA MVDNGVFRSGFPDSANFSFLESLGLRSIIYLCPEPYPEANNEFLKANGIRLFQFGIDG CKEPFVNIPEETIREALKVVLDEKNHPLLIHCNRGKHRTGCLVGCLRKVQRWCLSSIF DEYQRFAAAKARVSDQRFMERFEVSSLKHSPTTFSCSKR" gene complement(26663284..26670696) /locus_tag="TCM_030323" /note="dbxref CacaoGD:Thecc1EG030323" mRNA complement(join(26663284..26663308,26663404..26663978, 26664373..26664543,26664618..26664728,26664880..26665059, 26665174..26665278,26665356..26665454,26665594..26665749, 26666271..26666349,26666688..26666753,26666922..26667079, 26667557..26667910,26668545..26668700,26669014..26669091, 26669809..26670696)) /locus_tag="TCM_030323" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007271001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002185t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007271001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8879t1" mRNA complement(join(26663427..26663978,26664373..26664728, 26664880..26665059,26665174..26665278,26665356..26665454, 26665594..26665749,26666271..26666349,26666688..26666753, 26666922..26667079,26667557..26667910,26668545..26668700, 26669014..26669091,26669809..26670684)) /locus_tag="TCM_030323" /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007271001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002185t4" /inference="similar to AA sequence:Phytozome:GSVIVT01007271001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc764t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8879t1" mRNA complement(join(26663968..26664543,26664618..26664728, 26664880..26665059,26665174..26665278,26665356..26665454, 26665594..26665749,26666271..26666349,26666688..26666753, 26666922..26667079,26667557..26667910,26668545..26668704, 26669014..26669093)) /locus_tag="TCM_030323" /product="Transducin/WD40 repeat-like superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007271001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002185t3" /inference="similar to AA sequence:Phytozome:GSVIVT01007271001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc794t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8879t1" mRNA complement(join(26664047..26664543,26664618..26664728, 26664880..26665059,26665174..26665278,26665356..26665454, 26665594..26665749,26666271..26666349,26666688..26666753, 26666922..26667079,26667557..26667910,26668545..26668706)) /locus_tag="TCM_030323" /product="Transducin/WD40 repeat-like superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007271001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002185t3" /inference="similar to AA sequence:Phytozome:GSVIVT01007271001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14718t00001; alternateUTRof:Thecc1EG030323t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8879t1" CDS complement(join(26664376..26664543,26664618..26664728, 26664880..26665059,26665174..26665278,26665356..26665454, 26665594..26665749,26666271..26666349,26666688..26666753, 26666922..26667079,26667557..26667910,26668545..26668700, 26669014..26669091,26669809..26670204)) /locus_tag="TCM_030323" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002185t1" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY28832.1" /db_xref="Phytozome:GSVIVT01007271001" /db_xref="TAIR:AT2G32950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P43254" /translation="MGESSMGGALVPTATKSEQPPSSPESTAPLPPPTAPLPSPPPPP PPPPPLLPSPPAMPPSAAKEEAALEADADKDMLCPICMQLIKDAFLTACGHSFCYMCI LTHLRNKSDCPCCSHYLTNSHIFPNFLLNKLLKKTSARQLARTASPVEHLRQAIQQGC EVSAKELDGLLSLLVDKKRKMEQEEAETNMQILLDFLNCLRRQKLEELNEIQNDLQYI KEDINAVEKRSIELYRAKERCSVKLRMLVDNSFAAKTSPSLIDEHNNSIMSGAHNLRG WMGSASFQNNVDVKAQTSSQGIRSKDAYGGSDLVYETNSGLAEARKRRVHAQFNDLQE CYLQKRRHWTKQFHKQEGKDPNAMNREGYNPGLEDFESVLTTFTRYSRLRVIAELRHG DIFHSANIVSSIEFDHDDELFATAGVSRRIKVFEFSSVVNEPADVHCPIVEMTTRSKL SCLSWNKYTKTHIASSDYDGIVTVWDITTRQSVMEYEEHEKRAWSVDFSRTEPSMLVS GSDDCKVKIWCTKQEASVLNIDMIANICSVKYNPGSSVHVAVGSADHHIHYYDLRNVS QPLYVFGGHRKAVSYVKFLSNNELASASTDSTLRLWDVKENLPLRTFRGHMNEKNFVG LTVNSEYIACGSETNEVFVYHKAISKPAAWHRFGSDMADAEEDAGSYFISAVCWKSDS PTMLTANSRGTIKVLVLAA" CDS complement(join(26664376..26664543,26664618..26664728, 26664880..26665059,26665174..26665278,26665356..26665454, 26665594..26665749,26666271..26666349,26666688..26666753, 26666922..26667079,26667557..26667910,26668545..26668634)) /locus_tag="TCM_030323" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG002185t3" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 4" /protein_id="EOY28835.1" /db_xref="Phytozome:GSVIVT01007271001" /db_xref="TAIR:AT2G32950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P43254" /translation="MEQEEAETNMQILLDFLNCLRRQKLEELNEIQNDLQYIKEDINA VEKRSIELYRAKERCSVKLRMLVDNSFAAKTSPSLIDEHNNSIMSGAHNLRGWMGSAS FQNNVDVKAQTSSQGIRSKDAYGGSDLVYETNSGLAEARKRRVHAQFNDLQECYLQKR RHWTKQFHKQEGKDPNAMNREGYNPGLEDFESVLTTFTRYSRLRVIAELRHGDIFHSA NIVSSIEFDHDDELFATAGVSRRIKVFEFSSVVNEPADVHCPIVEMTTRSKLSCLSWN KYTKTHIASSDYDGIVTVWDITTRQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK VKIWCTKQEASVLNIDMIANICSVKYNPGSSVHVAVGSADHHIHYYDLRNVSQPLYVF GGHRKAVSYVKFLSNNELASASTDSTLRLWDVKENLPLRTFRGHMNEKNFVGLTVNSE YIACGSETNEVFVYHKAISKPAAWHRFGSDMADAEEDAGSYFISAVCWKSDSPTMLTA NSRGTIKVLVLAA" CDS complement(join(26664376..26664543,26664618..26664728, 26664880..26665059,26665174..26665278,26665356..26665454, 26665594..26665749,26666271..26666349,26666688..26666753, 26666922..26667079,26667557..26667910,26668545..26668634)) /locus_tag="TCM_030323" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG002185t3" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 4" /protein_id="EOY28836.1" /db_xref="Phytozome:GSVIVT01007271001" /db_xref="TAIR:AT2G32950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P43254" /translation="MEQEEAETNMQILLDFLNCLRRQKLEELNEIQNDLQYIKEDINA VEKRSIELYRAKERCSVKLRMLVDNSFAAKTSPSLIDEHNNSIMSGAHNLRGWMGSAS FQNNVDVKAQTSSQGIRSKDAYGGSDLVYETNSGLAEARKRRVHAQFNDLQECYLQKR RHWTKQFHKQEGKDPNAMNREGYNPGLEDFESVLTTFTRYSRLRVIAELRHGDIFHSA NIVSSIEFDHDDELFATAGVSRRIKVFEFSSVVNEPADVHCPIVEMTTRSKLSCLSWN KYTKTHIASSDYDGIVTVWDITTRQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK VKIWCTKQEASVLNIDMIANICSVKYNPGSSVHVAVGSADHHIHYYDLRNVSQPLYVF GGHRKAVSYVKFLSNNELASASTDSTLRLWDVKENLPLRTFRGHMNEKNFVGLTVNSE YIACGSETNEVFVYHKAISKPAAWHRFGSDMADAEEDAGSYFISAVCWKSDSPTMLTA NSRGTIKVLVLAA" mRNA complement(join(<26664520..26664543,26664618..26664728, 26664880..26665059,26665174..26665278,26665356..26665454, 26665594..26665749,26666271..26666349,26666688..26666753, 26666922..26667079,26667557..26667910,26668545..26668704, 26669014..26669091,26669809..26670684)) /locus_tag="TCM_030323" /product="Transducin/WD40 repeat-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007271001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002185t3" /inference="similar to AA sequence:Phytozome:GSVIVT01007271001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc764t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8879t1" CDS complement(join(<26664520..26664543,26664618..26664728, 26664880..26665059,26665174..26665278,26665356..26665454, 26665594..26665749,26666271..26666349,26666688..26666753, 26666922..26667079,26667557..26667910,26668545..26668634)) /locus_tag="TCM_030323" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG002185t3" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 3" /protein_id="EOY28834.1" /db_xref="Phytozome:GSVIVT01007271001" /db_xref="TAIR:AT2G32950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P43254" /translation="MEQEEAETNMQILLDFLNCLRRQKLEELNEIQNDLQYIKEDINA VEKRSIELYRAKERCSVKLRMLVDNSFAAKTSPSLIDEHNNSIMSGAHNLRGWMGSAS FQNNVDVKAQTSSQGIRSKDAYGGSDLVYETNSGLAEARKRRVHAQFNDLQECYLQKR RHWTKQFHKQEGKDPNAMNREGYNPGLEDFESVLTTFTRYSRLRVIAELRHGDIFHSA NIVSSIEFDHDDELFATAGVSRRIKVFEFSSVVNEPADVHCPIVEMTTRSKLSCLSWN KYTKTHIASSDYDGIVTVWDITTRQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK VKIWCTKQEASVLNIDMIANICSVKYNPGSSVHVAVGSADHHIHYYDLRNVSQPLYVF GGHRKAVSYVKFLSNNELASASTDSTLRLWDVKENLPLRTFRGHMNEKNFVGLTVNSE YIACGSETNEVFVYHKAISKPAAW" CDS complement(join(26664567..26664728,26664880..26665059, 26665174..26665278,26665356..26665454,26665594..26665749, 26666271..26666349,26666688..26666753,26666922..26667079, 26667557..26667910,26668545..26668700,26669014..26669091, 26669809..26670204)) /locus_tag="TCM_030323" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002185t4" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /protein_id="EOY28833.1" /db_xref="Phytozome:GSVIVT01007271001" /db_xref="TAIR:AT2G32950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P43254" /translation="MGESSMGGALVPTATKSEQPPSSPESTAPLPPPTAPLPSPPPPP PPPPPLLPSPPAMPPSAAKEEAALEADADKDMLCPICMQLIKDAFLTACGHSFCYMCI LTHLRNKSDCPCCSHYLTNSHIFPNFLLNKLLKKTSARQLARTASPVEHLRQAIQQGC EVSAKELDGLLSLLVDKKRKMEQEEAETNMQILLDFLNCLRRQKLEELNEIQNDLQYI KEDINAVEKRSIELYRAKERCSVKLRMLVDNSFAAKTSPSLIDEHNNSIMSGAHNLRG WMGSASFQNNVDVKAQTSSQGIRSKDAYGGSDLVYETNSGLAEARKRRVHAQFNDLQE CYLQKRRHWTKQFHKQEGKDPNAMNREGYNPGLEDFESVLTTFTRYSRLRVIAELRHG DIFHSANIVSSIEFDHDDELFATAGVSRRIKVFEFSSVVNEPADVHCPIVEMTTRSKL SCLSWNKYTKTHIASSDYDGIVTVWDITTRQSVMEYEEHEKRAWSVDFSRTEPSMLVS GSDDCKVKIWCTKQEASVLNIDMIANICSVKYNPGSSVHVAVGSADHHIHYYDLRNVS QPLYVFGGHRKAVSYVKFLSNNELASASTDSTLRLWDVKENLPLRTFRGHMNEKNFVG LTVNSEYIACGSETNEVFVYHKVSHHIGIRCFGIKTSL" mobile_element complement(26673486..26673532) /note="source:CACAO_M_S_E119990_F19_scaffold_10 289 337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26673533..26673618 /note="source:CACAO_M_E34353_F19_scaffold_4 316 402" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26673543..26673768 /note="source:scaffold_2_CACTA_0267 695 898" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26674558..26674707 /note="source:INTACT377_F1_scaffold_8-int 609 757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26674847..26674928 /note="source:CACAO_M_S_E19828_F19_scaffold_3 915 995" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26674935..26675387 /note="source:CACAO_M_E85278_F18_scaffold_10 5012 5448" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26675298..26679252) /locus_tag="TCM_030324" /note="dbxref CacaoGD:Thecc1EG030324" mRNA complement(join(26675298..26676063,26676319..26676366, 26676450..26676521,26676899..26676967,26677556..26677664, 26677869..26677984,26678246..26678339,26678455..26678647, 26678748..26679252)) /locus_tag="TCM_030324" /product="Alternative oxidase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g01130.1" /inference="similar to AA sequence:ricco:29842.m003522" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09043t00001" mRNA complement(join(26675350..26675488,26675899..26676063, 26676319..26676366,26676450..26676521,26676899..26676967, 26677556..26677664,26677869..26677984,26678246..26678339, 26678455..26678647,26678748..26678921)) /locus_tag="TCM_030324" /product="Alternative oxidase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g01130.1" /inference="similar to AA sequence:ricco:29842.m003522" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc2103t1; inference alignment:Newbler:10:TSA:cgbaP2_g09043t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1392t3" CDS complement(join(26675427..26675488,26675899..26676063, 26676319..26676366,26676450..26676521,26676899..26676967, 26677556..26677664,26677869..26677984,26678246..26678339, 26678455..26678647,26678748..26678893)) /locus_tag="TCM_030324" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003522" /codon_start=1 /product="Alternative oxidase family protein isoform 2" /protein_id="EOY28838.1" /db_xref="TAIR:AT4G22260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56X52" /translation="MTTASLSSAAFATSVSSSFRARNSRTSLPSNYQNPLRCSSPPSY RPLSGKLYPVKATLLQEDEEEVVVEKSFRTKGFPGNEVEEGWESRANSSSSDLERWVI KVEQSVNVFLTDSVIKILDTLYHDRDYPRFFVLETIARVPYFAFISVLHMYESFGWWR RADYLKVHFAESWNEMHHLLIMEELGGNSWWFDRFLAQHIAIFYYIMTVFMYAISPRM AYHFSECVESHAFETYDKFIRAKGKELKEKPAPEVAIKYYTGGDLYLFDEFQTERAPC SRRPKIENLYDVFVNIRDDEAEHCKTMKACQTHGNLRSPHSYPVDGFEDMPGCMIPEA NCEVLLEGPKQSFQWSNWNLASD" CDS complement(join(26675834..26676063,26676319..26676366, 26676450..26676521,26676899..26676967,26677556..26677664, 26677869..26677984,26678246..26678339,26678455..26678647, 26678748..26679109)) /locus_tag="TCM_030324" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003522" /codon_start=1 /product="Alternative oxidase family protein isoform 1" /protein_id="EOY28837.1" /db_xref="TAIR:AT4G22260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56X52" /translation="MDPKTCQTKAHDDINCCKQRAATRRCAHPNRLSLKNYQTTGRSR LPLTFVHRSLPLCSLGFEVSYFLKHAGEMTTASLSSAAFATSVSSSFRARNSRTSLPS NYQNPLRCSSPPSYRPLSGKLYPVKATLLQEDEEEVVVEKSFRTKGFPGNEVEEGWES RANSSSSDLERWVIKVEQSVNVFLTDSVIKILDTLYHDRDYPRFFVLETIARVPYFAF ISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNSWWFDRFLAQHIAIFY YIMTVFMYAISPRMAYHFSECVESHAFETYDKFIRAKGKELKEKPAPEVAIKYYTGGD LYLFDEFQTERAPCSRRPKIENLYDVFVNIRDDEAEHCKTMKACQTHGNLRSPHSYPV DGFEDMPGCMIPEANCEGIVDCIKKSLTPSQVKQKEEI" gene 26679347..26683607 /locus_tag="TCM_030325" /note="dbxref CacaoGD:Thecc1EG030325" mRNA join(26679347..26679577,26680327..26680763, 26681462..26681911,26682003..26682303,26682395..26682547, 26683052..26683607) /locus_tag="TCM_030325" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g01140.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030801t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007273001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8864t1" mRNA join(26680140..26680763,26681462..26681911, 26682003..26682303,26682395..26682520,26682988..26683512) /locus_tag="TCM_030325" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g01140.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030801t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007273001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1174t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8864t1" CDS join(26680362..26680763,26681462..26681911, 26682003..26682303,26682395..26682547,26683052..26683122) /locus_tag="TCM_030325" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030801t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY28839.1" /db_xref="Phytozome:GSVIVT01007273001" /db_xref="TAIR:AT3G20300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JGB3" /translation="MESEAQSSLSKNRANPGYITQEGLELKSFRLCLYWVCLDQSSLW RVGLSWSVFFVLAVGVPIVSHFVLLCSNCDEEHQRPYDGLVQLSLSSFAAISFISLSS WARKYGIRRFLFLDKLCDVSDKVRQGYAKELQKSMKLLCIFVLPCFAAESAYRIWWYA TGASQIPYLGNYYISDIIACTLQLSSWLYRTSIFILACILYQLTCHLQILRLEDFAQV FQKETEVGSILAEHLRIRRNLRIISHRFRLFLLLSLVFITASQFIALFMTTRTSTTVN FYEAGELALCSISLVTGLFICLRSATKITHRAQSITSLAAKWHVCATINSFDDADGET PTAQIVSSQMLPAGVDWESEEEEDGEDDLDNTNLVPIFAHTISFQKRQALVTYLEHNR AGITVFGFMVDRTGIHTIFVIELALLLWLLNKTIGISYSPLFISCKTAMLKAERVMRY LNLPVRQQ" CDS join(26680362..26680763,26681462..26681911, 26682003..26682303,26682395..26682520,26682988..26683001) /locus_tag="TCM_030325" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030801t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY28840.1" /db_xref="Phytozome:GSVIVT01007273001" /db_xref="TAIR:AT3G20300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JGB3" /translation="MESEAQSSLSKNRANPGYITQEGLELKSFRLCLYWVCLDQSSLW RVGLSWSVFFVLAVGVPIVSHFVLLCSNCDEEHQRPYDGLVQLSLSSFAAISFISLSS WARKYGIRRFLFLDKLCDVSDKVRQGYAKELQKSMKLLCIFVLPCFAAESAYRIWWYA TGASQIPYLGNYYISDIIACTLQLSSWLYRTSIFILACILYQLTCHLQILRLEDFAQV FQKETEVGSILAEHLRIRRNLRIISHRFRLFLLLSLVFITASQFIALFMTTRTSTTVN FYEAGELALCSISLVTGLFICLRSATKITHRAQSITSLAAKWHVCATINSFDDADGET PTAQIVSSQMLPAGVDWESEEEEDGEDDLDNTNLVPIFAHTISFQKRQALVTYLEHNR AGITVFGFMVDRTGIHTIFVIELALLLWLLNKTIANLT" gene complement(26683612..26684426) /locus_tag="TCM_030326" /note="dbxref CacaoGD:Thecc1EG030326" mRNA complement(join(26683612..26683954,26684029..26684426)) /locus_tag="TCM_030326" /product="Nonspecific lipid-transfer protein precursor, putative" /inference="alignment:exonerate- protein:2:ricco:29724.m000823" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030328t1" /inference="similar to AA sequence:ricco:30005.m001268" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8855t1" CDS complement(join(26683801..26683954,26684029..26684378)) /locus_tag="TCM_030326" /note="dbxref ricco:30005.m001268; paralog of Thecc1EG030328t1" /codon_start=1 /product="Nonspecific lipid-transfer protein precursor, putative" /protein_id="EOY28841.1" /translation="MKKTMGLSWYLGVVGLVVLVSTASSVHGMTCQQALTELIPCRPF LIAVAPSPTAPCCTGVSDVKAAASTTEARRDLCECFEKNAPAYGIKPEKAKLLPGLCG VTVPVPIDPSVNCATTCSCSLLSNVQHHIGKGSALRRWSCAAANKNKNLRSSNNFKQE FLWSGKI" gene complement(26685279..26686006) /locus_tag="TCM_030327" /note="dbxref CacaoGD:Thecc1EG030327" mRNA complement(26685279..26686006) /locus_tag="TCM_030327" /product="Nonspecific lipid-transfer protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400057382" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030329t1" /inference="similar to AA sequence:ricco:30005.m001268" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage" CDS complement(26685571..26685927) /locus_tag="TCM_030327" /note="dbxref ricco:30005.m001268; paralog of Thecc1EG030329t1" /codon_start=1 /product="Nonspecific lipid-transfer protein, putative" /protein_id="EOY28842.1" /translation="MEKKLMSLSWSLGVLGLVVLFATASSVHAITCQDAIMALMPCQK FLTGFAYKPCALCCKAMANVNAAANTTQVRRDLCTCFQQAGPALGVMPDKAEQLPQVC GLTVFVPMDPNIDCST" mobile_element complement(26687403..26687552) /note="source:CACAO_on_E732_scaffold_9 7775 7940" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(26689344..26690019) /locus_tag="TCM_030328" /note="dbxref CacaoGD:Thecc1EG030328" mRNA complement(join(26689344..26689535,26689644..26690019)) /locus_tag="TCM_030328" /product="Nonspecific lipid-transfer protein, putative" /inference="alignment:exonerate- protein:2:ricco:29724.m000823.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030326t1" /inference="similar to AA sequence:ricco:30005.m001268" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g16627t00001" CDS complement(join(26689526..26689535,26689644..26689909)) /locus_tag="TCM_030328" /note="dbxref ricco:30005.m001268; paralog of Thecc1EG030326t1" /codon_start=1 /product="Nonspecific lipid-transfer protein, putative" /protein_id="EOY28843.1" /translation="MTCQQALTELIPCRPFLIATAPSPTAPCCTGVSDVKAAASTTEA RRDLCECFEKNAPGYGVKPEKAKLLPGLCGVTVPVPIDPSVNCTTIT" mobile_element 26691341..26691378 /note="source:CACAO_Again_on_E120_scaffold_5 377 414" /mobile_element_type="transposon:TIR/hAT" mobile_element 26691345..26691401 /note="source:CACAO_M_E11054_F12_scaffold_2 8781 8839" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26691726..26692505) /locus_tag="TCM_030329" /note="dbxref CacaoGD:Thecc1EG030329" mRNA complement(join(26691726..26691964,26692078..26692505)) /locus_tag="TCM_030329" /product="Nonspecific lipid-transfer protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400057382.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030327t1" /inference="similar to AA sequence:ricco:30005.m001268" /note="quality class is strong, express is weak, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8859t1" CDS complement(join(26691955..26691964,26692078..26692430)) /locus_tag="TCM_030329" /note="dbxref ricco:30005.m001268; paralog of Thecc1EG030327t1" /codon_start=1 /product="Nonspecific lipid-transfer protein, putative" /protein_id="EOY28844.1" /translation="MEKKLMSLSWSLGVLGLVVLFAAASSVHAITCQDAIMALMPCQK FLTGFAYKPCALCCKAMANVNAAANTTQERRDLCTCFQQAGPALGVMPDKAKQLPQFC GLTVSVPMDPNIDCSTVN" gene complement(26693942..26694566) /locus_tag="TCM_030330" /note="dbxref CacaoGD:Thecc1EG030330" mRNA complement(26693942..26694566) /locus_tag="TCM_030330" /product="Lipid transfer 12-like protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s00850.1.3" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(26694118..26694489) /locus_tag="TCM_030330" /codon_start=1 /product="Lipid transfer 12-like protein" /protein_id="EOY28845.1" /translation="MEKKMMGFSCFFWILGLVFLVVTTNPVHADREATCRDCMVNFVP FCKPYLVGQAATPDVRCCIGLSNTDGGITKPQTRKDICECLHKLAVRDGYKPDRAKKI NEFCNLNFPVPLAPSADDCKK" gene 26695641..26697558 /locus_tag="TCM_030331" /note="dbxref CacaoGD:Thecc1EG030331" mRNA join(26695641..26695865,26696018..26696070, 26696334..26696828,26696940..26697146,26697295..26697558) /locus_tag="TCM_030331" /product="RPM1 interacting protein 4, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s00870.1" /inference="similar to AA sequence:ricco:29842.m003520" /note="quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc4870t1" CDS join(26695700..26695865,26696018..26696070, 26696334..26696828,26696940..26697146,26697295..26697330) /locus_tag="TCM_030331" /note="dbxref ricco:29842.m003520" /codon_start=1 /product="RPM1 interacting protein 4, putative" /protein_id="EOY28846.1" /translation="MISLSRVFSSSCPILEDVEMVEKLLQPSDFAVEDVMAEVVYLFV SDDKAESGERENLCLVFRQGKMDMSHVQLRSHVPKFGDWDNDNLPYTAYFENARKERA GIRMNPNDPEENPEAFMYTGGGLESNCDCQPVQVPPAAGSQKSIPADKNHNDGHSRQN APNRNGSYDYQKSVRSHRSMASESGSEKSNSDHSLLRFSHRRANSGQKKGRVGGSSFS SSVSGQFTHRNGSYQSDNNRQHRRTASIPKFGEWDETDPTSGEGYTAIFNQVKAEKQS PTSKFPTVPPQQSNYSDCYHSKPRTPSFCSKVCCCLFSRGSD" gene 26699041..26703917 /locus_tag="TCM_030332" /note="dbxref CacaoGD:Thecc1EG030332" mRNA join(26699041..26699206,26699293..26699372, 26699718..26699786,26699880..26699937,26700227..26700282, 26700372..26700414,26700499..26700560,26700787..26700900, 26701109..26701211,26701309..26701358,26701681..26701809, 26701896..26702147,26702231..26702310,26702392..26702518, 26702602..26702745,26702833..26703917) /locus_tag="TCM_030332" /product="EPS15 domain 2 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G05520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030799t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007243001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc133t2" mRNA join(26699041..26699206,26699293..26699372, 26699718..26699786,26699880..26699937,26700227..26700282, 26700375..26700414,26700499..26700560,26700787..26700900, 26701109..26701211,26701309..26701358,26701681..26701809, 26701896..26702147,26702231..26702310,26702392..26702518, 26702602..26702745,26702833..26703917) /locus_tag="TCM_030332" /product="EPS15 domain 2 isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT4G05520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030799t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007243001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:PASA:2:TSA:puevd3b029336t1a2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc133t2" mRNA join(26699063..26699206,26699293..26699372, 26699718..26699786,26699880..26699937,26700227..26700282, 26700372..26700414,26700499..26700560,26700787..26700900, 26701109..26701211,26701306..26701358,26701681..26701809, 26701896..26702147,26702231..26702310,26702392..26702518, 26702602..26702745,26702833..26703632) /locus_tag="TCM_030332" /product="EPS15 domain 2 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s00390.1" /inference="alignment:exonerate- protein:2:TAIR:AT4G05520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030799t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007243001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8893t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc133t2" mRNA join(26699076..26699206,26699293..26699372, 26699718..26699786,26699880..26699937,26700227..26700282, 26700372..26700414,26700499..26700560,26700787..26700900, 26701109..26701211,26701309..26701358,26701681..26701809, 26701896..26702147,26702231..26702310,26702392..26702518, 26702602..26703374) /locus_tag="TCM_030332" /product="EPS15 domain 2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s00390.1" /inference="alignment:exonerate- protein:2:TAIR:AT4G05520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030799t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007243001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc132t2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc133t2" mRNA join(26699076..26699206,26699293..26699372, 26699718..26699786,26699880..26699937,26700227..26700282, 26700372..26700414,26700499..26700560,26700787..26700900, 26701109..26701211,26701309..26701358,26701681..26701809, 26701896..26702147,26702231..26702310,26702392..26702415, 26702601..26702745,26702833..26703374) /locus_tag="TCM_030332" /product="EPS15 domain 2 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s00390.1" /inference="alignment:exonerate- protein:2:TAIR:AT4G05520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030799t1" /inference="similar to AA sequence:Phytozome:GSVIVT01007243001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc132t3; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc133t2" CDS join(26699122..26699206,26699293..26699372, 26699718..26699786,26699880..26699937,26700227..26700282, 26700372..26700414,26700499..26700560,26700787..26700900, 26701109..26701211,26701306..26701358,26701681..26701809, 26701896..26702147,26702231..26702310,26702392..26702518, 26702602..26702745,26702833..26703018) /locus_tag="TCM_030332" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG030799t1" /codon_start=1 /product="EPS15 domain 2 isoform 4" /protein_id="EOY28850.1" /db_xref="Phytozome:GSVIVT01007243001" /db_xref="TAIR:AT4G05520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3LF48" /translation="MEASPIPIGSCSKEHQKIYRDWFNVADSDGDGRVTGNDATKFFS MSKLSRQELKQIWAIADSKRQGFLGLTEFIVAMQLVSLAQAGNELTSDVLKSSVDAEN ISLPIMEGLDALAVKSKDSTTNGEPEMNGTTHPQVPTSAKWFTSKSARKTPASAVTSI IDGLKRLYIEKLKPLEVTYRFNDFVSPFLTNSDFDAKPMVMLLGQYSTGKTTFIKHLL QCDYPAGAHIGPEPTTDRFVVVMNGPDERSIPGNTIAVHADLPFGGLTTFGGAFLSKF ECSQMPHPLLDQITFVDTPGVLSGEKQRTQRSYDFTGVISWFAAKCDLILLLFDPHKL DISDEFKRVISSLRGNDDKIRVVLNKAHQVDTQQLMRVYGALMWSLGKVLNTPEVVRV YIGSFNDKLLNEAAIGPLGQDLFEKEQDDLLKDLIDIPRKACDRRINEFVKRARAAKI HAYIISHLKKEMPAMMGKAKAQQRLIDNLEDEFGKVQRDFHLPAGDFPSVEHYREVLN GYSIDKFEKLKPKMIQAVDDMLGYEIPELLKNFRNPYE" CDS join(26699122..26699206,26699293..26699372, 26699718..26699786,26699880..26699937,26700227..26700282, 26700372..26700414,26700499..26700560,26700787..26700900, 26701109..26701211,26701309..26701358,26701681..26701809, 26701896..26702147,26702231..26702310,26702392..26702518, 26702602..26703018) /locus_tag="TCM_030332" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG030799t1" /codon_start=1 /product="EPS15 domain 2 isoform 3" /protein_id="EOY28849.1" /db_xref="Phytozome:GSVIVT01007243001" /db_xref="TAIR:AT4G05520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3LF48" /translation="MEASPIPIGSCSKEHQKIYRDWFNVADSDGDGRVTGNDATKFFS MSKLSRQELKQIWAIADSKRQGFLGLTEFIVAMQLVSLAQAGNELTSDVLKSSVDAEN ISLPIMEGLDALAVKSKDSTTNGEPEMNGTTHPQVPTSAKWFTSKSARKTPASAVTSI IDGLKRLYIEKLKPLEVTYRFNDFVSPFLTNSDFDAKPMVMLLGQYSTGKTTFIKHLL QCDYPGAHIGPEPTTDRFVVVMNGPDERSIPGNTIAVHADLPFGGLTTFGGAFLSKFE CSQMPHPLLDQITFVDTPGVLSGEKQRTQRSYDFTGVISWFAAKCDLILLLFDPHKLD ISDEFKRVISSLRGNDDKIRVVLNKAHQVDTQQLMRVYGALMWSLGKVLNTPEVVRVY IGSFNDKLLNEAAIGPLGQDLFEKEQDDLLKDLIDIPRKACDRRINEFVKRARAAKIH AYIISHLKKEMPAMMGKAKAQQRLIDNLEDEFGKVLLCFISLSSHLFPFIFIRFSLLV LARKQVQRDFHLPAGDFPSVEHYREVLNGYSIDKFEKLKPKMIQAVDDMLGYEIPELL KNFRNPYE" CDS join(26699122..26699206,26699293..26699372, 26699718..26699786,26699880..26699937,26700227..26700282, 26700372..26700414,26700499..26700560,26700787..26700900, 26701109..26701211,26701309..26701358,26701681..26701809, 26701896..26702147,26702231..26702310,26702392..26702518, 26702602..26702745,26702833..26703018) /locus_tag="TCM_030332" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030799t1" /codon_start=1 /product="EPS15 domain 2 isoform 1" /protein_id="EOY28847.1" /db_xref="Phytozome:GSVIVT01007243001" /db_xref="TAIR:AT4G05520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3LF48" /translation="MEASPIPIGSCSKEHQKIYRDWFNVADSDGDGRVTGNDATKFFS MSKLSRQELKQIWAIADSKRQGFLGLTEFIVAMQLVSLAQAGNELTSDVLKSSVDAEN ISLPIMEGLDALAVKSKDSTTNGEPEMNGTTHPQVPTSAKWFTSKSARKTPASAVTSI IDGLKRLYIEKLKPLEVTYRFNDFVSPFLTNSDFDAKPMVMLLGQYSTGKTTFIKHLL QCDYPGAHIGPEPTTDRFVVVMNGPDERSIPGNTIAVHADLPFGGLTTFGGAFLSKFE CSQMPHPLLDQITFVDTPGVLSGEKQRTQRSYDFTGVISWFAAKCDLILLLFDPHKLD ISDEFKRVISSLRGNDDKIRVVLNKAHQVDTQQLMRVYGALMWSLGKVLNTPEVVRVY IGSFNDKLLNEAAIGPLGQDLFEKEQDDLLKDLIDIPRKACDRRINEFVKRARAAKIH AYIISHLKKEMPAMMGKAKAQQRLIDNLEDEFGKVQRDFHLPAGDFPSVEHYREVLNG YSIDKFEKLKPKMIQAVDDMLGYEIPELLKNFRNPYE" CDS join(26699122..26699206,26699293..26699372, 26699718..26699786,26699880..26699937,26700227..26700282, 26700372..26700414,26700499..26700560,26700787..26700900, 26701109..26701211,26701309..26701358,26701681..26701809, 26701896..26702147,26702231..26702310,26702392..26702415, 26702601..26702745,26702833..26703018) /locus_tag="TCM_030332" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG030799t1" /codon_start=1 /product="EPS15 domain 2 isoform 5" /protein_id="EOY28851.1" /db_xref="Phytozome:GSVIVT01007243001" /db_xref="TAIR:AT4G05520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3LF48" /translation="MEASPIPIGSCSKEHQKIYRDWFNVADSDGDGRVTGNDATKFFS MSKLSRQELKQIWAIADSKRQGFLGLTEFIVAMQLVSLAQAGNELTSDVLKSSVDAEN ISLPIMEGLDALAVKSKDSTTNGEPEMNGTTHPQVPTSAKWFTSKSARKTPASAVTSI IDGLKRLYIEKLKPLEVTYRFNDFVSPFLTNSDFDAKPMVMLLGQYSTGKTTFIKHLL QCDYPGAHIGPEPTTDRFVVVMNGPDERSIPGNTIAVHADLPFGGLTTFGGAFLSKFE CSQMPHPLLDQITFVDTPGVLSGEKQRTQRSYDFTGVISWFAAKCDLILLLFDPHKLD ISDEFKRVISSLRGNDDKIRVVLNKAHQVDTQQLMRVYGALMWSLGKVLNTPEVVRVY IGSFNDKLLKINEFVKRARAAKIHAYIISHLKKEMPAMMGKAKAQQRLIDNLEDEFGK VQRDFHLPAGDFPSVEHYREVLNGYSIDKFEKLKPKMIQAVDDMLGYEIPELLKNFRN PYE" CDS join(26699122..26699206,26699293..26699372, 26699718..26699786,26699880..26699937,26700227..26700282, 26700375..26700414,26700499..26700560,26700787..26700900, 26701109..26701211,26701309..26701358,26701681..26701809, 26701896..26702147,26702231..26702310,26702392..26702518, 26702602..26702745,26702833..26703018) /locus_tag="TCM_030332" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030799t1" /codon_start=1 /product="EPS15 domain 2 isoform 2" /protein_id="EOY28848.1" /db_xref="Phytozome:GSVIVT01007243001" /db_xref="TAIR:AT4G05520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3LF48" /translation="MEASPIPIGSCSKEHQKIYRDWFNVADSDGDGRVTGNDATKFFS MSKLSRQELKQIWAIADSKRQGFLGLTEFIVAMQLVSLAQAGNELTSDVLKSSVDAEN ISLPIMEGLDALAVSKDSTTNGEPEMNGTTHPQVPTSAKWFTSKSARKTPASAVTSII DGLKRLYIEKLKPLEVTYRFNDFVSPFLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLQ CDYPGAHIGPEPTTDRFVVVMNGPDERSIPGNTIAVHADLPFGGLTTFGGAFLSKFEC SQMPHPLLDQITFVDTPGVLSGEKQRTQRSYDFTGVISWFAAKCDLILLLFDPHKLDI SDEFKRVISSLRGNDDKIRVVLNKAHQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYI GSFNDKLLNEAAIGPLGQDLFEKEQDDLLKDLIDIPRKACDRRINEFVKRARAAKIHA YIISHLKKEMPAMMGKAKAQQRLIDNLEDEFGKVQRDFHLPAGDFPSVEHYREVLNGY SIDKFEKLKPKMIQAVDDMLGYEIPELLKNFRNPYE" gene 26704213..26706206 /locus_tag="TCM_030333" /note="dbxref CacaoGD:Thecc1EG030333" mRNA join(26704213..26704385,26704674..26704790, 26704892..26705062,26705281..26705406,26705495..26705596, 26705676..26706206) /locus_tag="TCM_030333" /product="Indole-3-butyric acid response 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003518" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030334t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s00810.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc2524t1" CDS join(26704242..26704385,26704674..26704790, 26704892..26705062,26705281..26705406,26705495..26705596, 26705676..26705825) /locus_tag="TCM_030333" /note="paralog of Thecc1EG030334t1" /codon_start=1 /product="Indole-3-butyric acid response 1" /protein_id="EOY28852.1" /db_xref="Phytozome:POPTR_0011s00810.1" /db_xref="TAIR:AT4G05530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S9W2" /translation="MEKMQKKIAKRFEGKVAIVTASTQGIGFGIAERLALEGASVVIS SRKQKNVDEAVGKLKANGIQVLGVVCHVSNAQQRKNLINKTVEYAIFMRWWIWFQKYG KIDVIVSNAAVNPVNMPLLQTQESILDKLWETNVKASILLLQDAAPHLQKGSSVIFVS SLGGYQPQPSMAMYGVTKTALLGLTKALAAEMAPDIRVNCVAPGFVPTRFAAYITANE TTRKTFEKTTLLNRLGTPEEIAAATAFLASDDASYITGETLIVAGGTPSRL" gene <26704350..26708273 /locus_tag="TCM_030334" /note="dbxref CacaoGD:Thecc1EG030334" mRNA join(<26704350..26704385,26706763..26706879, 26707086..26707220,26707460..26707585,26707678..26707779, 26707878..26708233) /locus_tag="TCM_030334" /product="Indole-3-butyric acid response 1 isoform 2" /inference="alignment:exonerate- protein:2:frave:gene19747.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030333t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s00810.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8925t1; inference alignment:Newbler:10:TSA:cgbaP1_g05576t00001" CDS join(<26704350..26704385,26706763..26706879, 26707086..26707220,26707460..26707585,26707678..26707779, 26707878..26708027) /locus_tag="TCM_030334" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030333t1" /codon_start=1 /product="Indole-3-butyric acid response 1 isoform 2" /protein_id="EOY28854.1" /db_xref="Phytozome:POPTR_0011s00810.1" /db_xref="TAIR:AT4G05530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S9W2" /translation="EGASVVISSRKQKNVDEAVEKLEKKGIQVLGVVCHVSNAQQRKD LIRKTVEKYGKIDVVVSNAAVNPTVDPLLQTQESILDKLWETNVKATVLLLQEAAPHL QKGSSVVLISSIAGFHPQAAMAMYGVTKTALLGLTKALAVEMAPDTRVNCVAPGFVPT YFAAYITKDEVVRKAAEDQTLLQRLGTPEDMAAATAFLASDDASYITGENLVVAGGIP SRL" mRNA join(26706253..26706575,26706763..26706879, 26707086..26707220,26707460..26707585,26707678..26707779, 26707878..26708273) /locus_tag="TCM_030334" /product="Indole-3-butyric acid response 1 isoform 1" /inference="alignment:exonerate- protein:2:frave:gene19747.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030333t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s00810.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05576t00001" CDS join(26706432..26706575,26706763..26706879, 26707086..26707220,26707460..26707585,26707678..26707779, 26707878..26708027) /locus_tag="TCM_030334" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030333t1" /codon_start=1 /product="Indole-3-butyric acid response 1 isoform 1" /protein_id="EOY28853.1" /db_xref="Phytozome:POPTR_0011s00810.1" /db_xref="TAIR:AT4G05530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S9W2" /translation="MKKMEMKGRRRFEGKVAIVTASTQGIGLSIAERLGLEGASVVIS SRKQKNVDEAVEKLEKKGIQVLGVVCHVSNAQQRKDLIRKTVEKYGKIDVVVSNAAVN PTVDPLLQTQESILDKLWETNVKATVLLLQEAAPHLQKGSSVVLISSIAGFHPQAAMA MYGVTKTALLGLTKALAVEMAPDTRVNCVAPGFVPTYFAAYITKDEVVRKAAEDQTLL QRLGTPEDMAAATAFLASDDASYITGENLVVAGGIPSRL" gene complement(26708395..>26711948) /locus_tag="TCM_030335" /note="dbxref CacaoGD:Thecc1EG030335" mRNA complement(join(26708395..26709593,26709708..26709863, 26710873..>26711948)) /locus_tag="TCM_030335" /product="Ubiquitin-specific protease family C19-related protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT4G22290.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046831t1" /inference="similar to AA sequence:ricco:29842.m003517" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.51 coverage; inference alignment:PASA:2:TSA:puevd3b029340t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8947t1" mRNA complement(join(26708395..26709190,26709382..26709593, 26709708..26709863,26710456..26710539,26710873..26711823)) /locus_tag="TCM_030335" /product="Ubiquitin-specific protease family C19-related protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G22290.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027838t1" /inference="similar to AA sequence:ricco:29842.m003517" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8947t1" CDS complement(join(26708998..26709190,26709382..26709593, 26709708..26709863,26710456..26710539,26710873..26711613)) /locus_tag="TCM_030335" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003517; paralog of Thecc1EG027838t1" /codon_start=1 /product="Ubiquitin-specific protease family C19-related protein isoform 1" /protein_id="EOY28855.1" /db_xref="TAIR:AT4G22290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HV27" /translation="MGSRIQSHQLSSGLVVSGRPEQLKERQPTMSLRAVPYTGGDVKK SGELGKMFDIPVLDQSSSNGPSSNPNSKQQQQLVQPSRTSSSSQPNSGSVRSGSNSGP IRKSSGPMPLQPTGLITSGPLSSGPRRSGQLGQAEQAVASSGKAGYGPGVTSLGEGMR FGFRVSKAVIWVVMVVVVMGLLVGAFLMVAVKKVVVLGAVGAVVAPLGLGLLWNCIWG RKGLVGYVRRYPDAELRGAVDGQYVKVTGALVPIAERKSLDGVEYMFSAGNNLNIGGV VTCGSIPLESSYQRVPRCVYVSTELYEYKGWGGKSANPKHHCFSWGCRHSEKYVADFY ISDFQSGLRALVKAGYGAKVAPFVKPATVADITKQNRDLSPSFLRWLAERNLSSDDRI MRLKEGYIKEGSTVSVMGVVRRHDNVLMIVPPSEPISTGCQWSRCLLPTYVEGLILTC DDNQNDDVVPV" CDS complement(join(26709297..26709593,26709708..26709863, 26710873..>26711946)) /locus_tag="TCM_030335" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003517; paralog of Thecc1EG046831t1" /codon_start=1 /product="Ubiquitin-specific protease family C19-related protein isoform 2" /protein_id="EOY28856.1" /db_xref="TAIR:AT4G22290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HV27" /translation="FFLEDKDGKVNSQRPKKKLVKAVDPRAVAHQPSRKPQTANSAPP FQREKDTHAITAFPPTRFRHSILLPLPTLPTLTPTTLHSLCNSPNSLSLSLSVLVFIS KINKQKRGRMGSRIQSHQLSSGLVVSGRPEQLKERQPTMSLRAVPYTGGDVKKSGELG KMFDIPVLDQSSSNGPSSNPNSKQQQQLVQPSRTSSSSQPNSGSVRSGSNSGPIRKSS GPMPLQPTGLITSGPLSSGPRRSGQLGQAEQAVASSGKAGYGPGVTSLGEGMRFGFRV SKAVIWVVMVVVVMGLLVGAFLMVAVKKVVVLGAVGAVVAPLGLGLLWNCIWGRKGLV GYVRRYPDAELRGAVDGQYVKVTGVVTCGSIPLESSYQRVPRCVYVSTELYEYKGWGG KSANPKHHCFSWGCRHSEKYVADFYISDFQSGLRALVKAGYGAKVAPFVKPATVADIT KQNRDLSPSFLRWLAERNLSSDDRIMRLKEGYAIYCSACSIMVIFSAPQLHLCGICRL " gene 26716297..26719553 /locus_tag="TCM_030336" /note="dbxref CacaoGD:Thecc1EG030336" mRNA join(26716297..26717058,26717767..26718222, 26718937..26719553) /locus_tag="TCM_030336" /product="Serine/threonine-protein kinase HT1" /inference="alignment:exonerate- protein:2:ricco:29842.m003516" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012052t1" /inference="similar to AA sequence:ricco:29842.m003516" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1551t1" CDS join(26716642..26717058,26717767..26718222, 26718937..26719185) /locus_tag="TCM_030336" /note="dbxref ricco:29842.m003516; paralog of Thecc1EG012052t1" /codon_start=1 /product="Serine/threonine-protein kinase HT1" /protein_id="EOY28857.1" /db_xref="TAIR:AT1G62400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2MHE4" /translation="MGTSCFHAFRLRKSKSKHLPAPSSSKTQLNSDMGNMEKKRFDSL ESWSMILDSENVETWEVSKDDQEEWTADLSQLFIGNKFASGAQSRVYRGIYKQRAVAV KMVRIPNHKDETRANLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQG TLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKV ADFGTSCLETQCLETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPF QGMTPVQAAFAVAEKNERPPLPESCQPALAHLIKRCWAANPSKRPDFSDIVSALERYD ECVKEGLPLTSYSGLVSRNVILERLKGCVSMSSSIPVHA" gene complement(26722544..26723578) /locus_tag="TCM_030338" /note="dbxref CacaoGD:Thecc1EG030338" mRNA complement(26722544..26723578) /locus_tag="TCM_030338" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g39470.1" /inference="similar to AA sequence:Phytozome:POPTR_0011s00770.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8891t1" CDS complement(26722947..26723576) /locus_tag="TCM_030338" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28858.1" /db_xref="Phytozome:POPTR_0011s00770.1" /db_xref="TAIR:AT1G12020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HRW1" /translation="MKKLYRRGTVHPSPPITTDHLSFLPATILTLAAALSPDDREVLA YLISCSNNDFGNFSSHRKNTHKNPTKRSISSSSDHDHPPLFTCDCFRCYMSYWVRWDS SPNRQLIHEIIDAFEDGLAQSKKAKSKKDRKKKGGGADGSGGLKRPELSLRKDDSSEL KSVEESTSSSSIGSSGEVCADDGEEGTEKGSVRSFVNFIGERIWNVWGQ" gene complement(26724569..26728475) /locus_tag="TCM_030339" /note="dbxref CacaoGD:Thecc1EG030339" mRNA complement(join(26724569..26724928,26725011..26725118, 26725575..26725696,26725780..26725903,26726692..26726744, 26727510..26727818,26728448..26728475)) /locus_tag="TCM_030339" /product="Carboxylesterases" /inference="alignment:exonerate-protein:2:frave:gene19751" /inference="similar to AA sequence:Phytozome:GSVIVT01007237001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8903t2" CDS complement(join(26724839..26724928,26725011..26725118, 26725575..26725696,26725780..26725903,26726692..26726744, 26727510..26727780)) /locus_tag="TCM_030339" /codon_start=1 /product="Carboxylesterases" /protein_id="EOY28859.1" /db_xref="Phytozome:GSVIVT01007237001" /db_xref="TAIR:AT4G22300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HRV9" /translation="MQPMLLKKPTVLLAVTLGSTIIFVLFFQPSRLSSSRKPDSMAAR SFVLWLHGLGDSGPANEPIKTLFRSPEFRNTKWSFPSARENAVTCNYGMRMPSWFDIH EIPVTADSPKDESDLLKAVQNVHTMIDKEIAAGTDPNNVFVCGFSQGGALTLASVLLY PKKLGGGAVFSGWVPFNSSMIKKFPEDAKKTPILWSHGMADRTVLFEAGQAGPPFLEQ AGVSCEFKAYPGLGHSISNEELQFLESWIKTRLQSSS" gene complement(26728530..26729846) /locus_tag="TCM_030340" /note="dbxref CacaoGD:Thecc1EG030340" mRNA complement(join(26728530..26728670,26729151..26729322, 26729541..26729657,26729747..26729846)) /locus_tag="TCM_030340" /product="Mediator of RNA polymerase II transcription subunit 11" /inference="alignment:exonerate- protein:2:ricco:29842.m003514.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044665t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040776" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc21045t1" CDS complement(join(26728648..26728670,26729151..26729322, 26729541..26729657,26729747..26729800)) /locus_tag="TCM_030340" /note="paralog of Thecc1EG044665t1" /codon_start=1 /product="Mediator of RNA polymerase II transcription subunit 11" /protein_id="EOY28860.1" /db_xref="Phytozome:PGSC0003DMP400040776" /db_xref="TAIR:AT3G01435.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N8I2" /translation="MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEF INNHCREFMKMIKDIQVTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVLSQLD AMKQTIDEYQGEDVHYSLE" gene 26729962..26732157 /locus_tag="TCM_030341" /note="dbxref CacaoGD:Thecc1EG030341" mRNA join(26729962..26730169,26730918..26731016, 26731214..26731266,26731579..26731652,26732040..26732157) /locus_tag="TCM_030341" /product="Light induced protein like isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g01210.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002216t1" /inference="similar to AA sequence:Phytozome:Glyma09g01210.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc506t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc506t1" mRNA join(26729962..26730169,26731214..26731266, 26731579..26731652,26732040..26732157) /locus_tag="TCM_030341" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g01210.3" /inference="similar to AA sequence:Phytozome:Glyma09g01210.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc506t4; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc506t1" CDS join(26730115..26730169,26730918..26731016, 26731214..26731266,26731579..26731652,26732040..26732091) /locus_tag="TCM_030341" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002216t1" /codon_start=1 /product="Light induced protein like isoform 1" /protein_id="EOY28861.1" /db_xref="Phytozome:Glyma09g01210.1" /db_xref="TAIR:AT4G22310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LB46" /translation="MASSKLQALWNHPAGPKTIHFWAPTFKWGISIANVADFSKPPEN LSYPQQVAVTCTGIIWSRYSTVITPKNWNLFSVNIVMAGTGLYQLARKIQHDHFAEAK AEPAVVKE" CDS join(26730115..26730169,26731214..26731266, 26731579..26731652,26732040..26732091) /locus_tag="TCM_030341" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY28862.1" /db_xref="Phytozome:Glyma09g01210.1" /db_xref="TAIR:AT4G22310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0PPQ4" /translation="MASSKLQALWNHPAGPKTTVTCTGIIWSRYSTVITPKNWNLFSV NIVMAGTGLYQLARKIQHDHFAEAKAEPAVVKE" gene complement(26732702..26735738) /locus_tag="TCM_030343" /note="dbxref CacaoGD:Thecc1EG030343" mRNA complement(join(26732702..26733190,26733990..26734163, 26735366..26735738)) /locus_tag="TCM_030343" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s00310.1" /inference="similar to AA sequence:Phytozome:Glyma09g01220.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc228t2" CDS complement(join(26733044..26733190,26733990..26734163, 26735366..26735734)) /locus_tag="TCM_030343" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28863.1" /db_xref="Phytozome:Glyma09g01220.1" /db_xref="TAIR:AT4G22320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2HVG2" /translation="MEGVGARLGRSSTRYGPAAVFTGPVRKWKKKWVHVSPSNNGGSS SNNSNSNHSQNHLSSNGTSNGNNGSHLVLFKWTPISQSQNNNNGNNTNNNSNDGNNSS SKDDAAAAPEEPPRRKFKYIPIAVLEEQKKEAAENEADENVDDETKQSEADPSAPEPT SRNDGFDEKPDINDVPMEESQEDNKIVRQDLNESTLDLSLGLTAHDGESDSKSKHDGQ LERVKSSNVGR" mobile_element complement(26733519..26733956) /note="source:INTACT153_F18_scaffold_9-int 4924 5326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26734381..26734440 /note="source:scaffold_1_CACTA_0009 1508 1571" /mobile_element_type="transposon:TIR/CACTA" gene 26736331..26739609 /locus_tag="TCM_030344" /note="dbxref CacaoGD:Thecc1EG030344" mRNA join(26736331..26736496,26736775..26737729, 26737963..26738074,26738300..26738476,26738620..26738746, 26738977..26739609) /locus_tag="TCM_030344" /product="Formyl transferase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004448001" /inference="similar to AA sequence:Phytozome:GSVIVT01004448001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc232t10" CDS join(26736976..26737729,26737963..26738074, 26738300..26738476,26738620..26738746,26738977..26739090) /locus_tag="TCM_030344" /codon_start=1 /product="Formyl transferase" /protein_id="EOY28864.1" /db_xref="Phytozome:GSVIVT01004448001" /db_xref="TAIR:AT1G31220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P52423" /translation="MDQAGLPPPLFFYLFIFLKTTQFLPRLLFSLIFPFFFLHSLAAA AIPTFYSRRRQVSSPSLSFFSSFPFPFSASHRCGRRKGISHSLSVSSSLLSLAASKLS LFFSFIVIFSGFFSLDFCELLMGTQSLFYGLCSKSVIPSPKNPRNSLSSSPPSHSYPS CFIKSKYRVSFRPQCSPASQRLRSLSRLECKNSVEKVSNVVSEKEDSTTLIKRKRLAV FVSGGGSNFRSIHQACVEGSVNGDVVVLVSNKQACGGAQYARDKNIPVILFPKTKDGP DALSPDDLVNVLRRFEVDFILLAGYLKLIPVELIRAYPRSIFNIHPSLLPAFGGKGYY GMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLANDTAEELAARVLREEH KLYVEVTSALCEDRIVWREDGVPLIRSKVNPKEYY" gene complement(26739614..26741076) /locus_tag="TCM_030345" /note="dbxref CacaoGD:Thecc1EG030345" mRNA complement(join(26739614..26740767,26740873..26741076)) /locus_tag="TCM_030345" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.53 coverage" mobile_element complement(26740018..26740102) /note="source:scaffold_2_CACTA_0277 4298 4380" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(26740522..26740767,26740873..26740887)) /locus_tag="TCM_030345" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28865.1" /translation="MDKDQFKCLGAQAHAKEASDSIDNNYGLVNLRHENRFNQKSSYQ DIIIGSLNLVILNPVLEAKIWVFHCSSKTCNTGKFMSTIPRI" gene 26741158..26743403 /locus_tag="TCM_030346" /note="dbxref CacaoGD:Thecc1EG030346" mRNA join(26741158..26741181,26741752..26742097, 26742423..26743012,26743377..26743403) /locus_tag="TCM_030346" /product="Alkaline phytoceramidase (aPHC)" /inference="alignment:exonerate- protein:2:ricco:29842.m003510" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020275t2" /inference="similar to AA sequence:ricco:29842.m003510" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc432t3" CDS join(26741844..26742097,26742423..26742936) /locus_tag="TCM_030346" /note="dbxref ricco:29842.m003510; paralog of Thecc1EG020275t2" /codon_start=1 /product="Alkaline phytoceramidase (aPHC)" /protein_id="EOY28866.1" /db_xref="TAIR:AT4G22330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94IB9" /translation="MADGISSFWGPVTSTTECREKNYAYSSYIAEFYNTISNVPTILL ALIGLVNAVRQRFEKRFSILHVSNMILAIGSMLYHATLQSVQQQSDETPMVWEMLLYM YILYSPDWHYRSTMPTFLFLYGAVFAVVHSVVHFGIGFKVHYVILCLLCIPRMYKYYI HTQDASAKRLVKLYTATLSLGSLCWFCNRVFCKQISRWPINPQGHALWHVFMGFTCYF ANTFLMFCRAQQRGWSPKVVYFMGILPYVKIEKPKTQ" gene complement(26743374..26749439) /locus_tag="TCM_030348" /note="dbxref CacaoGD:Thecc1EG030348" mRNA complement(join(26743374..26744082,26744196..26744279, 26744626..26744682,26744790..26744918,26745422..26745508, 26745600..26745647,26746340..26746496,26746759..26746900, 26747179..26747330,26747460..26747713,26747867..26748052, 26749415..26749439)) /locus_tag="TCM_030348" /product="Cytidinediphosphate diacylglycerol synthase 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003508" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030790t1" /inference="similar to AA sequence:ricco:29842.m003508" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc638t3; alternateUTRof:Thecc1EG030348t1; inference alignment:Newbler:10:TSA:cgbaB_g05948t00001" mRNA complement(join(26743609..26744082,26744196..26744279, 26744626..26744682,26744790..26744918,26745422..26745508, 26745600..26745647,26746340..26746496,26746759..26746900, 26747179..26747330,26747460..26747713,26747867..26748057, 26749415..26749436)) /locus_tag="TCM_030348" /product="Cytidinediphosphate diacylglycerol synthase 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29842.m003508" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030790t1" /inference="similar to AA sequence:ricco:29842.m003508" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05948t00001" CDS complement(join(26743996..26744082,26744196..26744279, 26744626..26744682,26744790..26744918,26745422..26745508, 26745600..26745647,26746340..26746496,26746759..26746900, 26747179..26747330,26747460..26747713,26747867..26747941)) /locus_tag="TCM_030348" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29842.m003508; paralog of Thecc1EG030790t1" /codon_start=1 /product="Cytidinediphosphate diacylglycerol synthase 2 isoform 1" /protein_id="EOY28867.1" /db_xref="TAIR:AT4G22340.3" /db_xref="UniProtKB/TrEMBL:UniRef50_O04928" /translation="MQKENNTAPPSAATVRIRHRKRSNEVVPEPSKANGGNLLVDDRN KYKSMWIRTYSTVWMIGGFALIVYMGHLYITAMVVVIQIYMAKELFNLLRKAHEDTHL PGFRLLNWHFFFTAMLFVYGRLLSQPLVNTVSSDKFLYQFVSSLIKYHMAICYFSYIA GFMWFILTLKKKMYKYQFGQYAWTHMILIVVFTQSSFTVANIFEGIFWFLLPASLIVI NDIFAYIFGFFFGRTPLIKLSPKKTWEGFIGASVTTIISAFMLANIMGRFQWLTCPRK DLSTGWLQCDPGPLFKAESYTLPGWISQWIPSKEISVLPVQWHALCLGLFASIIAPFG GFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVREGISVEII LDQILTNLTFEEQQTLLVKLGQILQERLGHS" CDS complement(join(26743996..26744082,26744196..26744279, 26744626..26744682,26744790..26744918,26745422..26745508, 26745600..26745647,26746340..26746496,26746759..26746900, 26747179..26747330,26747460..26747713,26747867..26747941)) /locus_tag="TCM_030348" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29842.m003508; paralog of Thecc1EG030790t1" /codon_start=1 /product="Cytidinediphosphate diacylglycerol synthase 2 isoform 1" /protein_id="EOY28868.1" /db_xref="TAIR:AT4G22340.3" /db_xref="UniProtKB/TrEMBL:UniRef50_O04928" /translation="MQKENNTAPPSAATVRIRHRKRSNEVVPEPSKANGGNLLVDDRN KYKSMWIRTYSTVWMIGGFALIVYMGHLYITAMVVVIQIYMAKELFNLLRKAHEDTHL PGFRLLNWHFFFTAMLFVYGRLLSQPLVNTVSSDKFLYQFVSSLIKYHMAICYFSYIA GFMWFILTLKKKMYKYQFGQYAWTHMILIVVFTQSSFTVANIFEGIFWFLLPASLIVI NDIFAYIFGFFFGRTPLIKLSPKKTWEGFIGASVTTIISAFMLANIMGRFQWLTCPRK DLSTGWLQCDPGPLFKAESYTLPGWISQWIPSKEISVLPVQWHALCLGLFASIIAPFG GFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVREGISVEII LDQILTNLTFEEQQTLLVKLGQILQERLGHS" gene complement(26750280..26760757) /locus_tag="TCM_030350" /note="dbxref CacaoGD:Thecc1EG030350" mRNA complement(join(26750280..26750314,26755504..26756006, 26756618..26756869,26756971..26757186,26757452..26757580, 26758261..26758373,26758955..26759325,26759468..26759613, 26760024..26760182,26760315..26760755)) /locus_tag="TCM_030350" /product="Transcription activators,DNA binding,RNA polymerase II transcription factors,catalytics,transcription initiation factors isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003352001" /inference="similar to AA sequence:Phytozome:POPTR_0006s01070.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9119t2" gene 26752247..26753150 /locus_tag="TCM_030351" /note="dbxref CacaoGD:Thecc1EG030351" mRNA join(26752247..26752329,26752435..26753150) /locus_tag="TCM_030351" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1610t1_C1" CDS join(26752318..26752329,26752435..26752830) /locus_tag="TCM_030351" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28873.1" /translation="MGAKTKTKKNQKRQLQSPEKRIIKVPNLTLEDWLLASPGPARMK PDCLNGGELYVFKHFSTKVHLSSSRAPQAVLFTPTDSFFVDLSSGDASCSSFSRSQSG KLKKKVSFRLPEEADIVVFYSPAGTFGGDQGSF" gene complement(26753332..26754256) /locus_tag="TCM_030352" /note="dbxref CacaoGD:Thecc1EG030352" mRNA complement(26753332..26754256) /locus_tag="TCM_030352" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.52 coverage" CDS complement(26753916..26754170) /locus_tag="TCM_030352" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28874.1" /translation="MHGPISFLASSPVTTIPYGWSKVAHHGSWSNNQQLPFYANLFAL TRTFPFFHCFSFSSGKKQKGMFVIQSTFITLQLHTLSYEI" gene 26754331..26755678 /locus_tag="TCM_030353" /note="dbxref CacaoGD:Thecc1EG030353" mRNA join(26754331..26754562,26755101..26755678) /locus_tag="TCM_030353" /product="Copper binding protein 9, putative" /inference="alignment:exonerate-protein:2:frave:gene19758" /inference="similar to AA sequence:frave:gene19758" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02083t00001" CDS join(26754391..26754562,26755101..26755480) /locus_tag="TCM_030353" /note="dbxref frave:gene19758" /codon_start=1 /product="Copper binding protein 9, putative" /protein_id="EOY28875.1" /translation="MAIVKMVMALVIMAASLGGKWVGAQVHHVVGGDRGWDPSSDVAS WSSGRSFRVGDKIWFAYSAAQESIIELKSQDEYESCDVSNPIRMYTDGLDGIPLDGEG TRYFVSSKPESCKNGLKVNVEVLPSGTAVTEKPKVAASSENSISTMAAAAPTTPSGSV KIYGSFLLLSVALWLCLMASFTF" mRNA complement(join(26755562..26756006,26756618..26756869, 26756971..26757186,26757452..26757580,26758261..26758373, 26758955..26759268,26760028..26760182,26760315..26760575)) /locus_tag="TCM_030350" /product="Transcription activators,DNA binding,RNA polymerase II transcription factors,catalytics,transcription initiation factors isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003352001" /inference="similar to AA sequence:frave:gene19759" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc364t23; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9119t2" mRNA complement(join(26755617..26756006,26756618..26756869, 26756971..26757186,26757452..26757580,26758261..26758373, 26758955..26759325,26759468..26759613,26760024..26760744)) /locus_tag="TCM_030350" /product="Transcription activators,DNA binding,RNA polymerase II transcription factors,catalytics,transcription initiation factors isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003352001" /inference="similar to AA sequence:ricco:30063.m001429" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03009t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9119t2" mRNA complement(join(26755680..26756006,26756618..26756869, 26756971..26757186,26757452..26757580,26758261..26758373, 26758955..26759325,26759468..26759613,26760315..26760757)) /locus_tag="TCM_030350" /product="Transcription activators,DNA binding,RNA polymerase II transcription factors,catalytics,transcription initiation factors isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003352001" /inference="similar to AA sequence:Phytozome:POPTR_0006s01070.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01629t00002; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9119t2" CDS complement(join(26755914..26756006,26756618..26756869, 26756971..26757186,26757452..26757580,26758261..26758373, 26758955..26759325,26759468..26759613,26760315..26760485)) /locus_tag="TCM_030350" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Transcription activators,DNA binding,RNA polymerase II transcription factors,catalytics,transcription initiation factors isoform 3" /protein_id="EOY28871.1" /db_xref="Phytozome:POPTR_0006s01070.1" /db_xref="TAIR:AT4G12610.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU25" /translation="MSFDLMLKSSCSGCGSTVDLYGSNCKHMTLCVTCGKTMAENQGK CFECGAIVTRLIREKYKNKPWMLEDETGQAQYQGHLEGSQSATYYLLMMQGKEFVAIP AGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKFDD KDNSVAGGKGRKKPTGDDDEGHVSDRGEEDEEEEAARKNRLGLDKKGGDDDEEGPRGG DLDMDDDDIEKGDDWEHEEIFTDDDEAVGNEPEERDLAPEVPAPPEIKEDEDEEDEEQ EGGLSKSGKELKKLLGKAGGLNDSDADDDDDDDDDDDMSFNPAPASKQKDAPKEEPAD NSPMKPASSASARGTSTASKSAKGKRKANGDDTKASNGTPLKKVKSETDSKSSVKEES ASASKGSVPPKGTPSSAKAGSTSSAVTSSSAKAGSASTAGPVTEEEIRAVLLQKAPVT TSDLVAKFKARLKSPEDKKAFADILRRISKIQKTNGPNNYVVLRDK" CDS complement(join(26755914..26756006,26756618..26756869, 26756971..26757186,26757452..26757580,26758261..26758373, 26758955..26759268,26760028..26760182,26760315..26760485)) /locus_tag="TCM_030350" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene19759" /codon_start=1 /product="Transcription activators,DNA binding,RNA polymerase II transcription factors,catalytics,transcription initiation factors isoform 4" /protein_id="EOY28872.1" /db_xref="TAIR:AT4G12610.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU25" /translation="MSFDLMLKSSCSGCGSTVDLYGSNCKHMTLCVTCGKTMAENQGK CFECGAIVTRLIREYNVRPSPSTDKNFFIGRFMSGLPSFSKKKNAENKWSLQKEGLQG RQLTDPLKMKNRRKTADGYERWMMKAANNGAAAFGEVEKFDDKDNSVAGGKGRKKPTG DDDEGHVSDRGEEDEEEEAARKNRLGLDKKGGDDDEEGPRGGDLDMDDDDIEKGDDWE HEEIFTDDDEAVGNEPEERDLAPEVPAPPEIKEDEDEEDEEQEGGLSKSGKELKKLLG KAGGLNDSDADDDDDDDDDDDMSFNPAPASKQKDAPKEEPADNSPMKPASSASARGTS TASKSAKGKRKANGDDTKASNGTPLKKVKSETDSKSSVKEESASASKGSVPPKGTPSS AKAGSTSSAVTSSSAKAGSASTAGPVTEEEIRAVLLQKAPVTTSDLVAKFKARLKSPE DKKAFADILRRISKIQKTNGPNNYVVLRDK" CDS complement(join(26755914..26756006,26756618..26756869, 26756971..26757186,26757452..26757580,26758261..26758373, 26758955..26759325,26759468..26759613,26760024..26760182, 26760315..26760485)) /locus_tag="TCM_030350" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transcription activators,DNA binding,RNA polymerase II transcription factors,catalytics,transcription initiation factors isoform 1" /protein_id="EOY28869.1" /db_xref="Phytozome:POPTR_0006s01070.1" /db_xref="TAIR:AT4G12610.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU25" /translation="MSFDLMLKSSCSGCGSTVDLYGSNCKHMTLCVTCGKTMAENQGK CFECGAIVTRLIREYNVRPSPSTDKNFFIGRFMSGLPSFSKKKNAENKWSLQKEGLQG RQLTDPLREKYKNKPWMLEDETGQAQYQGHLEGSQSATYYLLMMQGKEFVAIPAGSWY NFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKFDDKDNSV AGGKGRKKPTGDDDEGHVSDRGEEDEEEEAARKNRLGLDKKGGDDDEEGPRGGDLDMD DDDIEKGDDWEHEEIFTDDDEAVGNEPEERDLAPEVPAPPEIKEDEDEEDEEQEGGLS KSGKELKKLLGKAGGLNDSDADDDDDDDDDDDMSFNPAPASKQKDAPKEEPADNSPMK PASSASARGTSTASKSAKGKRKANGDDTKASNGTPLKKVKSETDSKSSVKEESASASK GSVPPKGTPSSAKAGSTSSAVTSSSAKAGSASTAGPVTEEEIRAVLLQKAPVTTSDLV AKFKARLKSPEDKKAFADILRRISKIQKTNGPNNYVVLRDK" CDS complement(join(26755914..26756006,26756618..26756869, 26756971..26757186,26757452..26757580,26758261..26758373, 26758955..26759325,26759468..26759613,26760024..26760125)) /locus_tag="TCM_030350" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30063.m001429" /codon_start=1 /product="Transcription activators,DNA binding,RNA polymerase II transcription factors,catalytics,transcription initiation factors isoform 2" /protein_id="EOY28870.1" /db_xref="TAIR:AT4G12610.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU25" /translation="MSGLPSFSKKKNAENKWSLQKEGLQGRQLTDPLREKYKNKPWML EDETGQAQYQGHLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEE KMKNRRKTADGYERWMMKAANNGAAAFGEVEKFDDKDNSVAGGKGRKKPTGDDDEGHV SDRGEEDEEEEAARKNRLGLDKKGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTD DDEAVGNEPEERDLAPEVPAPPEIKEDEDEEDEEQEGGLSKSGKELKKLLGKAGGLND SDADDDDDDDDDDDMSFNPAPASKQKDAPKEEPADNSPMKPASSASARGTSTASKSAK GKRKANGDDTKASNGTPLKKVKSETDSKSSVKEESASASKGSVPPKGTPSSAKAGSTS SAVTSSSAKAGSASTAGPVTEEEIRAVLLQKAPVTTSDLVAKFKARLKSPEDKKAFAD ILRRISKIQKTNGPNNYVVLRDK" mobile_element 26762036..26762103 /note="source:scaffold_9_CACTA_0946 17696 17763" /mobile_element_type="transposon:TIR/CACTA" gene 26762681..26768082 /locus_tag="TCM_030354" /note="dbxref CacaoGD:Thecc1EG030354" mRNA join(26762681..26762916,26763212..26763290, 26763505..26763563,26763656..26763780,26763917..26763991, 26764165..26764240,26764329..26764428,26764523..26764582, 26765005..26765075,26765200..26765262,26765450..26765514, 26765724..26765820,26766340..26766465,26766575..26766611, 26766708..26766740,26767129..26768082) /locus_tag="TCM_030354" /product="Fumarylacetoacetase" /inference="alignment:exonerate- protein:2:ricco:29724.m000833" /inference="similar to AA sequence:frave:gene19762" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17152t3" CDS join(26762713..26762916,26763212..26763290, 26763505..26763563,26763656..26763780,26763917..26763991, 26764165..26764240,26764329..26764428,26764523..26764582, 26765005..26765075,26765200..26765262,26765450..26765514, 26765724..26765820,26766340..26766465,26766575..26766611, 26766708..26766740,26767129..26767793) /locus_tag="TCM_030354" /note="dbxref frave:gene19762" /codon_start=1 /product="Fumarylacetoacetase" /protein_id="EOY28876.1" /db_xref="TAIR:AT1G12050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65374" /translation="MALKSFIQVHPDSHFPIQNLPYGAFKPEPAAPVRLGVAIGDYVL DLSEIAKAGLFDGPMLTGSDCFLQATLNKFLALGRPAWKEARATLQKLLSATEPTLRD NADLRQKSLVPMSKAEMVLPVEIGDYTDFFSSMHHAKNCSIIFRGPQSPIPPNWFHLP IAYHGRASSIVISGTDITRPRGQGYPAGDSPPYFGPSLKLDFELEMAAVVGPGNELGK TIDVNEAADHIFGLVLMNDWSARDIQAWEYVPLGPFLGKSFGTTISPWIVTLDALEPF ACEAPKQDPHPLPYLAEKNSKNYDIALEVQIKPSGQKDSSVVTRSNFKNLYWTVTQQL AHHTINGCNLRPGDLLGTGTISGPEPDSLGCLLELTWNGQKPLSLNGTPRKFLEDGDE VIFTGCCKGDGYNVGFGTCAEISLEILRAENAKQTMKSFRQFSHFGYSSSTTVTFTFH GDHSDSPPPPPQESKEIPVETPVPITVHLPQDIAAAKIQSAYRARVIRNLYKQIAAVN SEADRLQLLIQRQETVDSIRSDDREKLRMNETLMRLLLKLDSVPGINPTVREARRKVS RRVVELQEIVDGISGAKLDGDDECFGAWGPRGIFSMRDWDKAVEEMEERFCRERGGPE MERFCAEYLGFRCLQRFLGE" gene 26768201..26771155 /locus_tag="TCM_030356" /note="dbxref CacaoGD:Thecc1EG030356" mRNA join(26768201..26768797,26768891..26769088, 26769239..26769361,26769696..26769907,26770332..26771155) /locus_tag="TCM_030356" /product="Glycosyl hydrolase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29724.m000832" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008116t1" /inference="similar to AA sequence:Phytozome:GSVIVT01003344001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8949t3" CDS join(26768396..26768797,26768891..26769088, 26769239..26769361,26769696..26769907,26770332..26770743) /locus_tag="TCM_030356" /note="paralog of Thecc1EG008116t1" /codon_start=1 /product="Glycosyl hydrolase superfamily protein" /protein_id="EOY28877.1" /db_xref="Phytozome:GSVIVT01003344001" /db_xref="TAIR:AT2G20680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0DCM5" /translation="MEAEWRDKKLYPLLGILLLSILLYLNFGNTNLISFPISRQPRLD FVSANSTHFIVVNGGGAAENQSAAYVNGWNSYWLMQESVWGGPSRSRVSKMLQRGAQM GLTVCRTWAFSDGNGPNALQISPGVFNERVFRGLDYVIVEARKHGIRLVLSLVNNLNN FGGKAQYVRWAQEAGINVSSSSDSFFSHPMIKDYYKAYVKAILSRKNSLSGVKYSDEP AIFAWELMNEPRCESSSSAPILQAWITEMAAFVKSLDQKHLVTVGLEGFYGLNTTKGP EVNPGEWAASLGSDFVQNSAIENIDFASVHAYPDSWIPHADLEEKTRYLSQWVDSHIS DGDQVLKKPILFTEVGSLVYVNNQSIADKDILLKTMYDKIYESAKKRQAGAGALIWQL LVEGVEEYGDRFSFIAWDKPSTYKLILRQSCRLQSIFPKSSQNRKLSKDPCSGQLP" gene 26771461..26773509 /locus_tag="TCM_030357" /note="dbxref CacaoGD:Thecc1EG030357" mRNA join(26771461..26771768,26772114..26772277, 26772909..26772966,26773037..26773509) /locus_tag="TCM_030357" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1366t1" CDS join(26771619..26771768,26772114..26772277, 26772909..26772966,26773037..26773327) /locus_tag="TCM_030357" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28878.1" /translation="MQRISGTHEGQPYFIWSRMQALHPLPLDGHARAGEAIEHNISSI IRARAKVQLNPDKRALPGSGKLVMQINLAWSSAWIQYLTATILNRCLPLNSLCQSLHN TNRRAAPKRIIRDLQILLPVYPFWIPGKLSAWLSLPPKDFQQMMTLVNLTAAKASITS DSIHHFHCTHCSTDYTHQHSRPNGSMILRAPSKLTFDKSHRWQLPFWLFAAPGPDKQG NS" mobile_element complement(26773319..26773374) /note="source:scaffold_8_CACTA_0860 10419 10473" /mobile_element_type="transposon:TIR/CACTA" gene 26773341..26775197 /locus_tag="TCM_030358" /note="dbxref CacaoGD:Thecc1EG030358" mRNA join(26773341..26773600,26774040..26774468, 26774571..26775197) /locus_tag="TCM_030358" /product="MBOAT family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s01120.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01120.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1273t1_C1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1273t1_C2" mobile_element 26773341..26773390 /note="source:INTACT415F_F22_scaffold_4-int 2210 2258" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(26774133..26774468,26774571..26775032) /locus_tag="TCM_030358" /codon_start=1 /product="MBOAT family protein, putative" /protein_id="EOY28879.1" /db_xref="Phytozome:POPTR_0006s01120.1" /db_xref="TAIR:AT5G55370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCG3" /translation="MAEASWNLINPFSLLLASLGYCYFLLTRIPLGILRFMFLLPIFY LFSILPWYFPSALLRGILSFFITWIASSKLLLFCFNQGPLVHCQNFPDFIAISILPMK IKEQPTSSRSAMGRYEPVQLFNKPYLATSLQDFWGRRWNRYASNILRETVHKPTRNML TSVVGVGPARVLALICSLVVSGVLHEMLFYYITCGKKPTWEVTWFFALQGLSMAFEAA LKKWVRTKGWTVHSLGSVILTCGFVVVTFYWLLVLPVWRDGRNSCDC" gene complement(26775202..26776985) /locus_tag="TCM_030359" /note="dbxref CacaoGD:Thecc1EG030359" mRNA complement(26775202..26776985) /locus_tag="TCM_030359" /product="Acyl-CoA sterol acyl transferase 1, putative" /inference="alignment:exonerate- protein:2:ricco:29812.m000198" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005811t1" /inference="similar to AA sequence:Phytozome:POPTR_0009s05990.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(26775266..26776396) /locus_tag="TCM_030359" /note="paralog of Thecc1EG005811t1" /codon_start=1 /product="Acyl-CoA sterol acyl transferase 1, putative" /protein_id="EOY28880.1" /db_xref="Phytozome:POPTR_0009s05990.1" /db_xref="TAIR:AT3G51970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5CAF9" /translation="MESGEMNNFMKIWLCVVISLSYCYAIGKIIPKGTARLLCLLPVV CLYVLLPLNLSSLHLGGATAFFIAWLGNFKLLLFAFGKGPLSPPLSLLRFLAVACLPI KILHNPTPKSHPNGLNKENPSLKKTLDSQNKEIPGPVKPKKGQKSPINYAIKFLLLAL LLRAYDYSEYIHPTFMLVLYCGHVYFCLEIILAMVAALARAMLGLELEQQFNEPYLST SLQDFWGRRWNIMVTSILRPTVYEPVLNMGARLVGRKWAPLPAVFGSFVVSAVMHELI FYYLGRVRPTWEITWFFLLHGGCLMAEIALKKTLRDKLRLPTAVSTPLTIGFIMVTGS WLFFPQLLRIKADERALEEYAALGAFFKNVSALAITTFQFQL" gene complement(26777064..26781395) /locus_tag="TCM_030360" /note="dbxref CacaoGD:Thecc1EG030360" mRNA complement(join(26777064..26777540,26777633..26777807, 26777934..26778102,26778673..26778891,26778990..26779157, 26779241..26779426,26779543..26779627,26779951..26780195, 26780309..26780671,26781103..26781395)) /locus_tag="TCM_030360" /product="Ubiquitin C-terminal hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g08500.1" /inference="similar to AA sequence:ricco:29724.m000831" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8959t2" CDS complement(join(26777447..26777540,26777633..26777807, 26777934..26778102,26778673..26778891,26778990..26779157, 26779241..26779426,26779543..26779627,26779951..26780195, 26780309..26780641)) /locus_tag="TCM_030360" /note="dbxref ricco:29724.m000831" /codon_start=1 /product="Ubiquitin C-terminal hydrolases superfamily protein" /protein_id="EOY28881.1" /db_xref="TAIR:AT4G22285.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCG7" /translation="MMKTKRDDGNSEDWRGDSKRRKVVDWPSSPSEEPLVPYNDDEDD ERRALGRVGGGEQDGEARSEGNGQGVKSEEDEDDSDDPYGQGSFLGKQNRQVEVRRDC PYLDTVNRQVLDFDFERFCSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHV YINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTREQVEQLDKNKQWSRALDGSDYL PGMVGLNNIQKTDFVNVTIQSLMRVTPLRNFFLIPENYQHCKSPLVHRFGELTRKIWH ARNFKGQVSPHEFLQAVMKASKKRFRIGVQSEPVEFMSWLLNTLHANLRTSKKSSSII HKCFQGELEVVKETQNKAITEKKESGEEQNGAPKITDGAIEKHNVGAETYRMSFLMLG LDLPEPPLFKDVMEKNIIPQVPLFNILKKFDGETVTTTVRPPARMRYRVTRLPQYLIL HMGRFTRNNFFREKNPTLVNFPVKNLELKDYIPLPAPTKENEKLRTKYDLIANIVHDG KPDEGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSEAYMQIYEQQQ" gene complement(26782009..26784968) /locus_tag="TCM_030361" /note="dbxref CacaoGD:Thecc1EG030361" mRNA complement(join(26782009..26782354,26782851..26782975, 26783061..26783279,26783619..26783685,26783810..26784509)) /locus_tag="TCM_030361" /product="Immunoglobulin E-set superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g01300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002239t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s01530.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07604t00001; inference alignment:Newbler:10:TSA:cgbaP1_g06022t00001" mRNA complement(join(26782068..26782354,26782471..26782511, 26782589..26782720,26782856..26782975,26783061..26783279, 26783619..26783685,26783810..26784092,26784151..26784707)) /locus_tag="TCM_030361" /product="Immunoglobulin E-set superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g01300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002239t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s01530.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06022t00001" CDS complement(join(26782280..26782354,26782471..26782511, 26782589..26782720,26782856..26782975,26783061..26783279, 26783619..26783685,26783810..26784073)) /locus_tag="TCM_030361" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002239t1" /codon_start=1 /product="Immunoglobulin E-set superfamily protein isoform 1" /protein_id="EOY28882.1" /db_xref="Phytozome:POPTR_0016s01530.1" /db_xref="TAIR:AT3G07880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFC6" /translation="MSLAVGEDSSSKSMGFDKDGRDDSEASETKTEPKTPPNEGDVVE HHPAIARKASESSLCPTEDEDDDEERKIELGPQFTLKEQLEKDKDDESLRRWKEQLLG TVDFESVGETLEPDVKILSLAIKSPGRPDMVLPIPEDGKPKGLWFTLKEGSKYSLQFS FQVSNNIVSGLKYTNTVWKTGVKVDSTKEMLGTFSPQAEPYTHEMPEETTPSGMFARG SYSARSPAVIFLENQKKKERKMYICNPISLSVSIDSVTIFSNGSKPIVSGSMFHEPGF YRFKLFADDDNKSYLEINYTFDIRKEWQS" CDS complement(join(26782280..26782354,26782851..26782975, 26783061..26783279,26783619..26783685,26783810..26784073)) /locus_tag="TCM_030361" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG002239t1" /codon_start=1 /product="Immunoglobulin E-set superfamily protein isoform 3" /protein_id="EOY28884.1" /db_xref="Phytozome:POPTR_0016s01530.1" /db_xref="TAIR:AT3G07880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFC6" /translation="MSLAVGEDSSSKSMGFDKDGRDDSEASETKTEPKTPPNEGDVVE HHPAIARKASESSLCPTEDEDDDEERKIELGPQFTLKEQLEKDKDDESLRRWKEQLLG TVDFESVGETLEPDVKILSLAIKSPGRPDMVLPIPEDGKPKGLWFTLKEGSKYSLQFS FQVSNNIVSGLKYTNTVWKTGVKVDSTKEMLGTFSPQAEPYTHEMPEETTPSGMFARG SYSARSKFADDDNKSYLEINYTFDIRKEWQS" mRNA complement(join(<26782858..26782975,26783061..26783279, 26783619..26783685,26783810..26784092,26784370..26784662, 26784679..26784968)) /locus_tag="TCM_030361" /product="Immunoglobulin E-set superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g01300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002239t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s01530.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc324t2; inference alignment:Newbler:10:TSA:cgbaP1_g06022t00001" CDS complement(join(<26782860..26782975,26783061..26783279, 26783619..26783685,26783810..26784073)) /locus_tag="TCM_030361" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002239t1" /codon_start=1 /product="Immunoglobulin E-set superfamily protein isoform 2" /protein_id="EOY28883.1" /db_xref="Phytozome:POPTR_0016s01530.1" /db_xref="TAIR:AT3G07880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFC6" /translation="MSLAVGEDSSSKSMGFDKDGRDDSEASETKTEPKTPPNEGDVVE HHPAIARKASESSLCPTEDEDDDEERKIELGPQFTLKEQLEKDKDDESLRRWKEQLLG TVDFESVGETLEPDVKILSLAIKSPGRPDMVLPIPEDGKPKGLWFTLKEGSKYSLQFS FQVSNNIVSGLKYTNTVWKTGVKVDSTKEMLGTFSPQAEPYTHEMPEETTPSGMFARG SYSA" gene complement(26786394..26787818) /locus_tag="TCM_030362" /note="dbxref CacaoGD:Thecc1EG030362" mRNA complement(join(26786394..26786721,26786853..26787074, 26787417..26787818)) /locus_tag="TCM_030362" /product="Sulfate adenylyltransferase subunit 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s01510.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s01510.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17083t1" CDS complement(join(26786500..26786721,26786853..26787074, 26787417..26787599)) /locus_tag="TCM_030362" /codon_start=1 /product="Sulfate adenylyltransferase subunit 2" /protein_id="EOY28885.1" /db_xref="Phytozome:POPTR_0016s01510.1" /db_xref="TAIR:AT5G20130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LAF9" /translation="MAQVLNLNPLGSSYSTRPESPGFRSLNAARSQNVARNWSSLLQN LKCNGRFSCLFSDNRREEQARKALESALGGKKSEFEKWNKEIKRREEAGGGDDAGGGG WFGWGGRFGWSNDDHFWQEAQQTSLAVLGIIVMYLIIAKGELMLAVVFNPLLYALRGT RSGLTYVTSRILGKRNADGPPDSCNMSNKETHGYVSAKENVLKKWGSN" gene 26788743..26794848 /locus_tag="TCM_030363" /note="dbxref CacaoGD:Thecc1EG030363" mRNA join(26788743..26788825,26791166..26791697, 26792726..26792837,26792954..26793125,26793229..26793416, 26793748..26793892,26794470..26794779) /locus_tag="TCM_030363" /product="SWIB complex BAF60b domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29724.m000827" /inference="similar to AA sequence:ricco:29724.m000827" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17111t3" mobile_element 26790252..26790370 /note="source:scaffold_5_CACTA_0596 1747 1844" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26790949..26791129 /note="source:scaffold_5_CACTA_0596 1746 1850" /mobile_element_type="transposon:TIR/CACTA" mRNA join(26790965..26791697,26792726..26792837, 26792954..26793416,26793748..26793892,26794470..26794848) /locus_tag="TCM_030363" /product="SWIB complex BAF60b domain-containing protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29724.m000827" /inference="similar to AA sequence:ricco:29724.m000827" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:PASA:2:TSA:puevd3b029365t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17111t3" mRNA join(26791019..26791697,26792726..26792837, 26792954..26793125,26793229..26793416,26793748..26793892, 26794470..26794782) /locus_tag="TCM_030363" /product="SWIB complex BAF60b domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29724.m000827" /inference="similar to AA sequence:ricco:29724.m000827" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06929t00001; alternateUTRof:Thecc1EG030363t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17111t3; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc17t9" CDS join(26791174..26791697,26792726..26792837, 26792954..26793125,26793229..26793416,26793748..26793873) /locus_tag="TCM_030363" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29724.m000827" /codon_start=1 /product="SWIB complex BAF60b domain-containing protein, putative isoform 1" /protein_id="EOY28886.1" /db_xref="TAIR:AT4G22360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCH0" /translation="MVSDQEIARGLEALLRQSDPNATTTLNGVVQQLEAKLGLDLSHK AGFIRDQINLLHPRQPQAQPPPKDHFTLQHHPQFHSHQHQQFPLHFALQHHSQFPSHD LNFRQHAPQPQPQPRAPLTALPPPQVQPQLQQQQQQQQQQLQLQPQPQPAVTKAEVFP QNAAAIATSEVPKESAPVGAKRRGGPGGLNKVCSVSPALQAIVGEPALPRTEIVKQLW AYIRKNSLQDPSNKRKIICDEALRLVFETDCTDMFKMNKLLAKHITPLEPSKESSQAK RVKVDVESTTESVERGPNPVIISEALAKFLGAGGREMLATEAKRRVWEYIEVNRLEDP LNSTVVLCDAKLRELLGCESIPVMGIDDTLLRHHLFKHS" CDS join(26791174..26791697,26792726..26792837, 26792954..26793125,26793229..26793416,26793748..26793873) /locus_tag="TCM_030363" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29724.m000827" /codon_start=1 /product="SWIB complex BAF60b domain-containing protein, putative isoform 1" /protein_id="EOY28887.1" /db_xref="TAIR:AT4G22360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCH0" /translation="MVSDQEIARGLEALLRQSDPNATTTLNGVVQQLEAKLGLDLSHK AGFIRDQINLLHPRQPQAQPPPKDHFTLQHHPQFHSHQHQQFPLHFALQHHSQFPSHD LNFRQHAPQPQPQPRAPLTALPPPQVQPQLQQQQQQQQQQLQLQPQPQPAVTKAEVFP QNAAAIATSEVPKESAPVGAKRRGGPGGLNKVCSVSPALQAIVGEPALPRTEIVKQLW AYIRKNSLQDPSNKRKIICDEALRLVFETDCTDMFKMNKLLAKHITPLEPSKESSQAK RVKVDVESTTESVERGPNPVIISEALAKFLGAGGREMLATEAKRRVWEYIEVNRLEDP LNSTVVLCDAKLRELLGCESIPVMGIDDTLLRHHLFKHS" CDS join(26791174..26791697,26792726..26792837, 26792954..26793136) /locus_tag="TCM_030363" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29724.m000827" /codon_start=1 /product="SWIB complex BAF60b domain-containing protein, putative isoform 3" /protein_id="EOY28888.1" /db_xref="TAIR:AT4G22360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCH0" /translation="MVSDQEIARGLEALLRQSDPNATTTLNGVVQQLEAKLGLDLSHK AGFIRDQINLLHPRQPQAQPPPKDHFTLQHHPQFHSHQHQQFPLHFALQHHSQFPSHD LNFRQHAPQPQPQPRAPLTALPPPQVQPQLQQQQQQQQQQLQLQPQPQPAVTKAEVFP QNAAAIATSEVPKESAPVGAKRRGGPGGLNKVCSVSPALQAIVGEPALPRTEIVKQLW AYIRKNSLQDPSNKRKIICDEALRLVFETDCTDMFKMNKLLAKHITPLEPSSIF" gene complement(26794833..26796418) /locus_tag="TCM_030364" /note="dbxref CacaoGD:Thecc1EG030364" mRNA complement(join(26794833..26795099,26795200..26795251, 26795366..26795447,26795547..26795658,26795792..26796418)) /locus_tag="TCM_030364" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g01310.1" /inference="similar to AA sequence:ricco:29724.m000828" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc17t11_C1" CDS complement(join(26794959..26795099,26795200..26795251, 26795366..26795447,26795547..26795658,26795792..26796199)) /locus_tag="TCM_030364" /note="dbxref ricco:29724.m000828" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28889.1" /db_xref="TAIR:AT4G22370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S3J0" /translation="MGSVSFPAPVYNHQVATSNPVLLISQERTHHQPSRHQNLRGITF VSGKFQSRHVKQSLIPASYPTRRRGLSVVPLDAKTKSSDPGGEEDSGALETVLKLYSA IKNQNVRELSDIIDDECRCICNFFSSFQPLQGKKQVLEFFASLIKFLGDHIEFVVQPT LHDGMVVGIHWRLEWNKAHMPLGKGFSFYTCQIYHGRVVIRNVEMFMEPLLHMEPFRV KTMVYLTTMVDKISFGVSSKAWKKKALCALLGLLFLSAILLFSKLY" gene 26796539..26799842 /locus_tag="TCM_030365" /note="dbxref CacaoGD:Thecc1EG030365" mRNA join(26796539..26796807,26796898..26796991, 26797280..26797399,26797504..26797552,26797812..26797911, 26798049..26798110,26798290..26798348,26799412..26799842) /locus_tag="TCM_030365" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29724.m000826" /inference="similar to AA sequence:ricco:29724.m000826" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01139t00001_C2" CDS join(26796656..26796807,26796898..26796991, 26797280..26797399,26797504..26797552,26797812..26797911, 26798049..26798110,26798290..26798348,26799412..26799516) /locus_tag="TCM_030365" /note="dbxref ricco:29724.m000826" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28890.1" /db_xref="TAIR:AT4G12590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IH79" /translation="MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPD PKIVKEGQVIVRARNLRAGANFIPPKSFRSRRVYFSNEENGLLFVPKGQAQNAQAQMF SDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLS TVDVSYVSSRSWYFLNLFGLRGLFSLILGEENATDDTQRMMQMSGFGFDPTKSLGAEK DGLDIVQHEWALPKFEHRAEAVLKKLIR" gene 26800210..26803926 /locus_tag="TCM_030366" /note="dbxref CacaoGD:Thecc1EG030366" mRNA join(26800210..26800656,26801828..26802376, 26803036..26803926) /locus_tag="TCM_030366" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00896t00001_C1" CDS join(26802362..26802376,26803036..26803488) /locus_tag="TCM_030366" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28891.1" /translation="MASVEVQPAAAPLPENEAAEVSKVEKTPKEEAAAAAPVAESVSA EAPAAETASDAPAAEETEAPNAKAPVAEADTKEVVEEAKVEELEKPAAKETKEETPEV KTEAVAEEAKVEETPKPTSEAPAVEEEKPAKEEKAAEEEEEASTEVPVEKAEE" gene complement(26803900..26809327) /locus_tag="TCM_030368" /note="dbxref CacaoGD:Thecc1EG030368" mRNA complement(join(26803900..26805066,26805408..26805997, 26807028..26809327)) /locus_tag="TCM_030368" /product="E3 ubiquitin-protein ligase UPL5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g39550.1" /inference="similar to AA sequence:ricco:29206.m000140" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04146t00001" mobile_element complement(26803971..26804060) /note="source:CACAO_M_E69780_F2_scaffold_9 1562 1648" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(26804803..26805066,26805408..26805997, 26807028..26808873)) /locus_tag="TCM_030368" /note="dbxref ricco:29206.m000140" /codon_start=1 /product="E3 ubiquitin-protein ligase UPL5" /protein_id="EOY28892.1" /db_xref="TAIR:AT4G12570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU29" /translation="MSLFQSPAVDQFSNGCDHRLSSKRKFDDYALAFDEADEDEAPLV PVRMRKDDHHHHLHHQGSHPITAVQPSSKGSSSSSPASFLDSRPSSSDAPSSSASCSS SRLQFFIRMISEGNTIVVHANSEDTVKSLHERIQLMTGIPVIEQRLIYRGKQLQWEQS LADCAIQNDAGLQLVGRMRSTEHPQTWQVMDDMISLICRLCRGESVPSSTKRIKDCLI KFFTITPKDNNDSAPAHLHIFMASSAPAAMVMLYMSPINGNKQCADSSIRHFLNSCRN ALSKQLHSYCAPIVLEFCKLLRKVVNEDSLYAMCRSTLGSLLETVGTSRGLVLREVKG SIVMQEIFPFVSELADKLSKDLDCSIDSTTSGGPSSSDVRDFTAFLNPLRSAILEQVG FRIPISVDWEKKDYNLPPYGEEIEFLHAIFNDLLAKMEKCLVRMEENFAVRGSRDGGV VHSGSSQYLAILKELNGISKLYEGAEEQFWMVLRNRKSSLCSLIISFARRTDDNRWLL EHKDVTDFESRRHLAMMMFQEVKEDYEELHEMLIDRSQLLAESFEYIARAEPESLHAG LFMEFKNEEATGPGVLREWFFLVCQAIFNPENALFVPCSNDRRRFFPNPASRVDPLHL EYFSFAGRVIALALMHKVQVGVVFDRVFFLQLAGMHISLEDIREADPCLYSSCKKILE MDAEFIDSDALGLTFVREIEELGSRRVMELCPGGKSIVVNSRNRQEYVNLLIRDRFVT SISEQVYHFAQGFSHILSNSRLQKFFFQSLELEDLDWMLYGSESPISVEDWKAHTEYN GYRENDPQITWFWEIVREMSAEQRKVLLFFWTSVKNLPVEGFRGLASRLYIYKSSEPH ERLPSSHTCFYRLCFPPYPSMTEMQKRFRVVTQEHVGCSFGTW" gene complement(26811856..26814747) /locus_tag="TCM_030369" /note="dbxref CacaoGD:Thecc1EG030369" mRNA complement(join(26811856..26812313,26812997..26813076, 26813489..26814747)) /locus_tag="TCM_030369" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s01360.1" /inference="similar to AA sequence:ricco:29206.m000146" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g8979t1" CDS complement(join(26813037..26813076,26813489..26814696)) /locus_tag="TCM_030369" /note="dbxref ricco:29206.m000146" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY28893.1" /db_xref="TAIR:AT4G12560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCS6" /translation="MDLVMVSSCKSGQVNTSRLLDVHSLSILREVRPDLENQNMMGNL PLDLIADILSRLPVKYVLRLRCVSKAWRSLIGDPDFIKLHLRHSLESRTNHTLILKSS DLYAADLACLGPFAKLEHPLMSYNHGVKILGSCNGLLCIRNIVEDMAIWNPYTRKHQV LPSLSSCNAYVYGFGYDTVSDDYKVVKIMQLGGVDGKALESEVKICSLKRLAWRRIPD IPCIFSFPGVNGVFASGALHWVLTHKVQLSEENVIVALDLAAEKYREIPQPEYIDKRF QLDVGVLGGCLCAIANYDDVRVDLWVMKEYGLKESWTRLFSVAREEVIGPLRYVKPLA YSRSGDQVLLEHNSMNHFWYDLKERKANDVWFDDMRFSCETEICLQSLVSLYVNRRQL NREDNGDIQKMDDFLSEGFKLVL" gene 26815161..26818132 /locus_tag="TCM_030370" /note="dbxref CacaoGD:Thecc1EG030370" mRNA join(26815161..26815858,26815957..26816027, 26816104..26816439,26816511..26816618,26816761..26817366, 26817514..26818132) /locus_tag="TCM_030370" /product="Inositol transporter 4" /inference="alignment:exonerate- protein:2:TAIR:AT4G16480.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030378t1" /inference="similar to AA sequence:frave:gene19794" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc885t2" CDS join(26815723..26815858,26815957..26816027, 26816104..26816439,26816511..26816618,26816761..26817366, 26817514..26817987) /locus_tag="TCM_030370" /note="dbxref frave:gene19794; paralog of Thecc1EG030378t1" /codon_start=1 /product="Inositol transporter 4" /protein_id="EOY28894.1" /db_xref="TAIR:AT4G16480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23492" /translation="MVEGGVVKADTTEFSECWKTTWRTPYIMRLALSAGIGGLLFGYD TGVISGALLYIREDFQEVDRKTWLQEVIVSMAVAGAIFGAAFGGWMNDRFGRKLSILV ADALFFVGAIVMALAPAPWMIILGRIFVGLGVGMASMTAPLYISEASPARIRGALVST NGLLITGGQFLSYLINLAFTKAPGTWRWMLGVAGAPAVVQFVLMLSLPESPRWLYRRD KVEEARSILEKIYPANEVEDELKALKLSVDAEKADEQAIGDNFIAKLKGALGNAVVRR GLYAGVTVQVAQQFSGINTVMYYSPTIVQFAGFASNKTAMALSLVTSGLNAVGSIVSM AFVDRYGRRRLMIVSMFGIISCLVVLSVVFFQAASHAPKINQFDSTHFATNATCPSYL SAPTPSSWNCMSCLKADCGFCANGANEYSPGACLAMTTDLENSCQGKHRTWFKDGCPS KFGFLAVVFLGLYIITYSPGMGTVPWIVNSEIYPLKYRGFGGGVAAVFNWVCNLIVSL TFLTLTKALGSSGTFLLFAGYCVIGLIFIYWFVPETKGLQFEEVEKMLESGYKPKAFR RKSKSDKQSP" gene complement(26818866..26821018) /locus_tag="TCM_030371" /note="dbxref CacaoGD:Thecc1EG030371" mRNA complement(join(26818866..26819120,26819245..26819347, 26819518..26821018)) /locus_tag="TCM_030371" /product="F-box and associated interaction domains-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s01390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030369t1" /inference="similar to AA sequence:TAIR:AT4G12560.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06508t00001" CDS complement(join(26819308..26819347,26819518..26820698)) /locus_tag="TCM_030371" /note="paralog of Thecc1EG030369t1" /codon_start=1 /product="F-box and associated interaction domains-containing protein, putative" /protein_id="EOY28895.1" /db_xref="TAIR:AT4G12560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU30" /translation="MSKLPMDVITDVCYRLPVKTLVRFKSLSKPCCSVIDDPDFIRAH LNRSNRTRSNLNIILRGLHLYSVEFDALDTAIPLEYPLSNGAGTEAFGSCNGLLALRM TEKSLALYNPSTREFRRLPVSQIDPPPGESCKSGYVFYGFGQDVKTDDYKVVRMAQFN KDDEEDDEGYFFDYEVKVYSLKNDSWRKITELPHYLRFMFQFFYHLLHRRGYGVLAGG VLHWVMPPRIELGMRTSRIVGFDLTTEKFVKVPQPECADRNYLLDVAALDGCLCAVCN YNQEFVDVWVMKEYGMKESWTRLLSVQKTRAINALTFLRPLAYSKYRDKVLLEINNQK FMWYDLQSKKMRSVKIGGSSTSFGAEVYVGSLVPIEDRKRVENQKQNEREEQKKRNRK KRDDFLSQGFKLVL" gene 26821143..26823246 /locus_tag="TCM_030372" /note="dbxref CacaoGD:Thecc1EG030372" mRNA join(26821143..26821742,26822527..26823246) /locus_tag="TCM_030372" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.30 coverage" CDS join(26821662..26821742,26822527..26822874) /locus_tag="TCM_030372" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28896.1" /translation="MVMSGSTGQAIMTSWHNKDYYYYNIENCRGRANTILSSTLQGEN WSVFTTGKVNSLHIYLREKNNLNRNISTIYVILSRIFVILLKGCPVAEPDCSFEHCPE LMFLTSTANDGELFIKQRKATDVSDLLSTSRYTYEDLTSI" gene 26823466..26829179 /locus_tag="TCM_030373" /note="dbxref CacaoGD:Thecc1EG030373" mRNA join(26823466..26824009,26824709..26825186, 26825267..26825310,26825397..26825492,26825587..26827858) /locus_tag="TCM_030373" /product="Tonoplast dicarboxylate transporter isoform 2" /inference="alignment:exonerate- protein:2:ricco:29964.m000158" /inference="similar to AA sequence:frave:gene19776" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc211t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9257t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc516t13" mRNA join(26823513..26824009,26824709..26825186, 26825267..26825310,26825397..26825492,26825587..26826100, 26826678..26826748,26827170..26827497,26827915..26829179) /locus_tag="TCM_030373" /product="Tonoplast dicarboxylate transporter isoform 1" /inference="alignment:exonerate- protein:2:ricco:29964.m000158" /inference="similar to AA sequence:frave:gene19776" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9257t1" CDS join(26823584..26824009,26824709..26825186, 26825267..26825310,26825397..26825492,26825587..26826100, 26826678..26826748,26827170..26827497,26827915..26827916) /locus_tag="TCM_030373" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene19776" /codon_start=1 /product="Tonoplast dicarboxylate transporter isoform 1" /protein_id="EOY28897.1" /db_xref="TAIR:AT5G47560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LG88" /translation="MKGNHDSDDDPKSPLLPVNDPVEPSSRSPFSLKSLVTLKSLYVL LGPLLCTVICLCVKFDGPVASRNMLALLAWVFAWWLTEAVPMPITSMAPLFLFPLFGI ASADSVAHSYMDDVITLVLGSFILVLAVERYNIHRRLALNITLRFCGDPVNPPLLLLG ICATTFFVSMWMHNVACAVMMMPVATGILQRLPVGPTRSTLVGNFCRAVVLGVTYAAP IGGMSTLTGTGVNLILVAMWKSSSQEADSIGFNTWFFFGFPLALLIFFALWAILCLLY LSRGSSQALSAYLDKAHLKRELDTLGPMAFAEKMILAVFGMLIALWMTRSITEDIPGW GALFNGRVGDGTVSVMMATLLFIIPNKKRKGEKLMDWNECKKLPWNIILLLGAGFAIA DGVQSSGLADVLSKTLDFLEQAPYLAIAPAVCLISAIITEFITSNDATATLLLPLLIQ MAKTMHVHPLLLMIPGAVGSQFAFMLPTGTPSNIVGFTTGHINIQDMIKTGLPLKIAG TAILSFLMPTLGEQQQQDIRWNPSIPVSPRAGFLTVLFLASMDNESVSHFLHCHRTSP KSLILGHLPTSMSKTKKCRNPLFFLPRWATGLQHPHGDMVALAWRNSPSAQFPSPRSG THLHLLPPMTFPAGLAVPESSYTAYHIT" CDS join(26823584..26824009,26824709..26825186, 26825267..26825310,26825397..26825492,26825587..26826360) /locus_tag="TCM_030373" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene19776" /codon_start=1 /product="Tonoplast dicarboxylate transporter isoform 2" /protein_id="EOY28898.1" /db_xref="TAIR:AT5G47560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LG88" /translation="MKGNHDSDDDPKSPLLPVNDPVEPSSRSPFSLKSLVTLKSLYVL LGPLLCTVICLCVKFDGPVASRNMLALLAWVFAWWLTEAVPMPITSMAPLFLFPLFGI ASADSVAHSYMDDVITLVLGSFILVLAVERYNIHRRLALNITLRFCGDPVNPPLLLLG ICATTFFVSMWMHNVACAVMMMPVATGILQRLPVGPTRSTLVGNFCRAVVLGVTYAAP IGGMSTLTGTGVNLILVAMWKSSSQEADSIGFNTWFFFGFPLALLIFFALWAILCLLY LSRGSSQALSAYLDKAHLKRELDTLGPMAFAEKMILAVFGMLIALWMTRSITEDIPGW GALFNGRVGDGTVSVMMATLLFIIPNKKRKGEKLMDWNECKKLPWNIILLLGAGFAIA DGVQSSGLADVLSKTLDFLEQAPYLAIAPAVCLISAIITEFITSNDATATLLLPLLIQ MAKTMHVHPLLLMIPGAVGSQFAFMLPTGTPSNIVGFTTGHINIQDMIKTGLPLKIAG TAILSFLMPTLGKLFLRIPIISFFRKEMVGFIISQVLLLQVLMFLEQTEFNSCKADCD VRVVGLANIVKFIEPRCIDPAPVVYHHEMNICLAWLTMS" gene 26828632..26833490 /locus_tag="TCM_030374" /note="dbxref CacaoGD:Thecc1EG030374" mRNA join(26828632..26828848,26828934..26828977, 26829301..26829425,26829493..26829719,26830001..26830162, 26830313..26830431,26830907..26830981,26831260..26831353, 26831704..26831763,26832081..26832149,26832275..26832373, 26832736..26832780,26832898..26833000,26833093..26833490) /locus_tag="TCM_030374" /product="Mo25 family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006719001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002298t1" /inference="similar to AA sequence:Phytozome:GSVIVT01006719001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc215t20" CDS join(26828633..26828848,26828934..26828977, 26829301..26829425,26829493..26829719,26830001..26830162, 26830313..26830431,26830907..26830981,26831260..26831353, 26831704..26831763,26832081..26832149,26832275..26832373, 26832736..26832780,26832898..26833000,26833093..26833169) /locus_tag="TCM_030374" /note="paralog of Thecc1EG002298t1" /codon_start=1 /product="Mo25 family protein" /protein_id="EOY28899.1" /db_xref="Phytozome:GSVIVT01006719001" /db_xref="TAIR:AT5G47540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGK3" /translation="MELPLMDLKERKRKEACRSCVGCSGKALNEWGMHVNVKVERGGF LVGLDCNCKVESTQSKCKVFCFLVDPPKVLYLRVHYPSSNKKWEIPKLSGAVGLIVIK TAEKSQTELKEEKKEGIRTGSETLRESGAASRAVAQRLSQAAALPDTTAATANHLDKS SSTKMKGLFKSKPRTPVDIVRQTRDLLIYAGRSPDNRESKREEKMAELCKNIRELKSI LYGNSESEPVSEACAQLTQEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVQ SRLIASDYLEANIDLMDILLAGYENTDMALHYGAMLRECIRHQTVARYVLESQHMKKF FDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYEWFFADYNSKLLESSNYITR RQAVKLLGDILLDRSNSAVMTRYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAAN QNKPPDIVSILVANKSKLLRLFADFKTDKEDEQFEADKAQVVKEIAALEPKDRP" gene 26834601..26837658 /locus_tag="TCM_030375" /note="dbxref CacaoGD:Thecc1EG030375" mRNA join(26834601..26834999,26835130..26835185, 26835307..26835357,26835444..26835506,26835706..26835786, 26835917..26836020,26836105..26836189,26836295..26836349, 26836446..26836489,26836712..26836780,26836859..26836959, 26837035..26837091,26837269..26837658) /locus_tag="TCM_030375" /product="Inositol monophosphatase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s01600.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01600.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17130t1" mRNA join(26834752..26834999,26835130..26835185, 26835307..26835357,26835706..26835786,26835917..26836020, 26836105..26836189,26836295..26836349,26836446..26836489, 26836712..26836780,26836859..26836959,26837035..26837091, 26837347..26837642) /locus_tag="TCM_030375" /product="Inositol monophosphatase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s01600.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01600.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09487t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17130t1" CDS join(26834987..26834999,26835130..26835185, 26835307..26835357,26835444..26835506,26835706..26835786, 26835917..26836020,26836105..26836189,26836295..26836349, 26836446..26836489,26836712..26836780,26836859..26836959, 26837035..26837091,26837269..26837443) /locus_tag="TCM_030375" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Inositol monophosphatase family protein isoform 1" /protein_id="EOY28900.1" /db_xref="Phytozome:POPTR_0006s01600.1" /db_xref="TAIR:AT3G02870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8S8" /translation="MADNGSFQEFLATAVDAATKAGEIIREGFYQTKHVEHKGQLAMK FMYDKAVKIINVDGLLEVDLVTETDKACEDLVFNHLKQHYPSHKFIGEETTAACGTSE LTDEPTWIVDPLDGTTNFVHGFPFVCVSIGLTIGKVPTVGVVYNPIMNELFTGVLGKG AFLNGTPIRVSSQTELVKSLLATEAGTKRDKLTVDTSTNRINSLLFKVRSLRMSGSCA LNLCGIACGRLDLFYELGYGGPWDVAAGVLIVKEAGGLVYDPTNIQNLLKPEVHSYVD HFKVFHFAIRFGKEFNITAPQVAASNPSLKDAFVKALQQSE" CDS join(26834987..26834999,26835130..26835185, 26835307..26835357,26835706..26835786,26835917..26836020, 26836105..26836189,26836295..26836349,26836446..26836489, 26836712..26836780,26836859..26836959,26837035..26837091, 26837347..26837443) /locus_tag="TCM_030375" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Inositol monophosphatase family protein isoform 2" /protein_id="EOY28901.1" /db_xref="Phytozome:POPTR_0006s01600.1" /db_xref="TAIR:AT3G02870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8S8" /translation="MADNGSFQEFLATAVDAATKAGEIIREGFYQTKHVEHKGQVDLV TETDKACEDLVFNHLKQHYPSHKFIGEETTAACGTSELTDEPTWIVDPLDGTTNFVHG FPFVCVSIGLTIGKVPTVGVVYNPIMNELFTGVLGKGAFLNGTPIRVSSQTELVKSLL ATEAGTKRDKLTVDTSTNRINSLLFKVRSLRMSGSCALNLCGIACGRLDLFYELGYGG PWDVAAGVLIVKEAGGLVYDPFGKEFNITAPQVAASNPSLKDAFVKALQQSE" gene complement(26837649..26841183) /locus_tag="TCM_030376" /note="dbxref CacaoGD:Thecc1EG030376" mRNA complement(join(26837649..26838403,26838487..26838741, 26839158..26839852,26840588..26840769,26840847..26840938, 26841036..26841183)) /locus_tag="TCM_030376" /product="Auxin-responsive family protein" /inference="alignment:exonerate- protein:2:ricco:29964.m000155.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002299t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s01210.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc226t5" CDS complement(join(26838071..26838403,26838487..26838741, 26839158..26839852,26840588..26840769,26840847..26840938, 26841036..26841131)) /locus_tag="TCM_030376" /note="paralog of Thecc1EG002299t1" /codon_start=1 /product="Auxin-responsive family protein" /protein_id="EOY28902.1" /db_xref="Phytozome:POPTR_0016s01210.1" /db_xref="TAIR:AT5G47530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGK4" /translation="MGSLVSNNCEAKLTLASNYKQKCCQRNITNSANGLSNMTEEGDG EMTRNCSSSSKLGQDECKWDGPYGATNAAGKDLVGVVLTWEKHLSNLIPNPQQIPSSL AFSSFSCFDLVNQVWEPGIFLGSFAQRNAFHHLSGKHIAVPFSLRDLVAMARMLFKLV LSLSLFVSLILSSNAQTCAKYAFSSNRVFRSCTDLPVLNSFLHYNYDSSGKLEIAYRH TGITSSRWVAWAINPTSTGMVGSQALVAYQQTDGSMRAYKSPITQYQTQLREGDLSFD VSALSATYANSEIIIFATLELSNNGTTLNQVWQEGALSGNTPQMHATSGANVQSMGTL NLVSGEAGAAGGGSSRLRKRNIHGVLNTVSWGILMPIGAIIARYLKVFKSADPAWFYL HASCQFSAYVVGVAGWGTGLKLGSESPGIQYDAHRTIGIILFCLATLQVFALLLRPKP DHKLRFYWNIYHHLVGYTVIILSVINIFKGFDILKPEKKWKNAYIGVIVALAFNAVML EAYTWFVVVRRKRSESAGKMPHGVNGANGNGVNSRGARPQQA" mobile_element complement(26846020..26846134) /note="source:scaffold_9_CACTA_0936 328 425" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26847311..26848032) /note="source:CACAO_M_E49279_F74_scaffold_6 1187 1948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26847921..26848099 /note="source:scaffold_5_CACTA_0614 198 363" /mobile_element_type="transposon:TIR/CACTA" gene 26848893..26852724 /locus_tag="TCM_030377" /note="dbxref CacaoGD:Thecc1EG030377" mRNA join(26848893..26850401,26850805..26852724) /locus_tag="TCM_030377" /product="ARM repeat superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30048.m000307" /inference="similar to AA sequence:ricco:30048.m000307" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:PASA:2:TSA:puevd3b029383t1a2; alternateUTRof:Thecc1EG030377t1; inference alignment:Newbler:10:TSA:cgbaB_g01784t00002" mRNA join(26848893..26850401,26850805..26850895, 26851431..26851817) /locus_tag="TCM_030377" /product="ARM repeat superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30048.m000307" /inference="similar to AA sequence:ricco:30048.m000307" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01784t00002" CDS join(26849076..26850401,26850805..26850867) /locus_tag="TCM_030377" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30048.m000307" /codon_start=1 /product="ARM repeat superfamily protein isoform 1" /protein_id="EOY28903.1" /db_xref="TAIR:AT4G16490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JMH0" /translation="MVSLQDSHSNSNRFPLGRNFYAPGSASTTKIHRHTGRSMRTVRS NLYQNDNSSCSFTSSVPERSGFVSENLTESVIDMRLGELASKSKSVKSESESEGFLDI SQAFSDFSACSSDISGELQRLASLPSPENRLGNENSNNGAEPEPELEPCHGFLQRENF STEIIESISPEDLQPTVKICIDGLQSPSIAVKRSAAAKLRLLAKNRVDNRALIGESGA IPALIPLLRNSDPWTQEHAVTALLNLSLFEANKTLIINAGAIKSLVYVLKTGTETSKQ NAACALLSLALIEENKTSIGACGAIPPLVSLLMNGSNRGKKDALTTLYKLCSARQNKE RAVSAGAVRPLVGLVGEQGTGMAEKAMVVLSSLAGIEEGREAIVEEGGIAALVEAIED GSLKGKEFAVLTLLQLCADSIRNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL REPRQEASSSSP" CDS join(26849076..26850401,26850805..26850867) /locus_tag="TCM_030377" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30048.m000307" /codon_start=1 /product="ARM repeat superfamily protein isoform 1" /protein_id="EOY28904.1" /db_xref="TAIR:AT4G16490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JMH0" /translation="MVSLQDSHSNSNRFPLGRNFYAPGSASTTKIHRHTGRSMRTVRS NLYQNDNSSCSFTSSVPERSGFVSENLTESVIDMRLGELASKSKSVKSESESEGFLDI SQAFSDFSACSSDISGELQRLASLPSPENRLGNENSNNGAEPEPELEPCHGFLQRENF STEIIESISPEDLQPTVKICIDGLQSPSIAVKRSAAAKLRLLAKNRVDNRALIGESGA IPALIPLLRNSDPWTQEHAVTALLNLSLFEANKTLIINAGAIKSLVYVLKTGTETSKQ NAACALLSLALIEENKTSIGACGAIPPLVSLLMNGSNRGKKDALTTLYKLCSARQNKE RAVSAGAVRPLVGLVGEQGTGMAEKAMVVLSSLAGIEEGREAIVEEGGIAALVEAIED GSLKGKEFAVLTLLQLCADSIRNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL REPRQEASSSSP" gene complement(26851470..26855254) /locus_tag="TCM_030378" /note="dbxref CacaoGD:Thecc1EG030378" mRNA complement(join(26851470..26852724,26852833..26853438, 26853537..26853644,26853722..26854057,26854140..26854210, 26854315..26854537,26855212..26855254)) /locus_tag="TCM_030378" /product="Inositol transporter 4" /inference="alignment:exonerate-protein:2:frave:gene19794" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030370t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400023639" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc957t4" CDS complement(join(26852251..26852724,26852833..26853438, 26853537..26853644,26853722..26854057,26854140..26854210, 26854315..26854450)) /locus_tag="TCM_030378" /note="paralog of Thecc1EG030370t1" /codon_start=1 /product="Inositol transporter 4" /protein_id="EOY28905.1" /db_xref="Phytozome:PGSC0003DMP400023639" /db_xref="TAIR:AT4G16480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23492" /translation="MVEGGVTKADKTEFTECWKTTWKTPYIMKLALSAGIGGLLFGYD TGVISGALLYIRDDFQEVDRKTWLQETIVSTAVAGAIIGAAFGGWINDRFGRKLSILV ADVLFFVGAIVMALAPAPWMIIIGRIFVGLGVGMASMTAPLYISEASPARIRGALVST NGLLITGGQFLSYLINLAFTHAPGTWRWMLGVAGIPAVVQFVLMLSLPESPRWLYRQN KVEEARSILERIYPADEVEDELNALKESVEAEKADEHAIGDSLLEKVRGALSNAVVRR GLYAGVTVQVAQQFSGINTVMYYSPTIVQFAGFASNKTAMALSLITSGLNAVGSIISM TLVDRYGRRRLMIVSMFGIITCLVVLSIVFFQAASHSPKINQFESTHFAINATCPSYL SAPNPASWNCMSCLKAECGFCANGANEYSPGACLALTTDLKGSCREQHRTWFKDGCPS RFGFLAVILLGFYIISYSPGMGTVPWIVNSEIYPLRYRGIGGGMAAVANWVSNLIVSE TFLTLTKALGSAGTFLLFAAVCVIGLICIYWFVPETKGLPFEEVEEMLKVGYKPKAFR TRSKGDTGNA" gene 26855913..26857161 /locus_tag="TCM_030379" /note="dbxref CacaoGD:Thecc1EG030379" mRNA 26855913..26857161 /locus_tag="TCM_030379" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.24 coverage" CDS 26856457..26856693 /locus_tag="TCM_030379" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28906.1" /translation="MVVQLILGSQILRLTTWTWPSFCLAASPAAVAAQVRVSRQIKLA MAATWYGGGSWALPYRCSNLTTRPPNPSAAFQEG" gene 26857478..26861943 /locus_tag="TCM_030381" /note="dbxref CacaoGD:Thecc1EG030381" mRNA join(26857478..26857716,26859784..26859859, 26860152..26860889,26861181..26861943) /locus_tag="TCM_030381" /product="RAB GTPase A5A isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g31470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020064t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01650.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:PASA:2:TSA:puevd3b029386t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g00556t00002" mRNA join(26857478..26857716,26860152..26860889, 26861181..26861943) /locus_tag="TCM_030381" /product="RAB GTPase A5A isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g31470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020064t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01650.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:PASA:2:TSA:puevd3b029386t1a4; alternateUTRof:Thecc1EG030381t2; inference alignment:Newbler:10:TSA:cgbaP2_g00556t00002" mRNA join(26857478..26857716,26860152..26860297, 26860524..26860889,26861181..26861943) /locus_tag="TCM_030381" /product="RAB GTPase A5A isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g31470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020064t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01650.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:PASA:2:TSA:puevd3b029386t1a3; alternateUTRof:Thecc1EG030381t1; inference alignment:Newbler:10:TSA:cgbaP2_g00556t00002" mRNA join(26857709..26857716,26859784..26859859, 26860152..26860297,26860524..26860889,26861181..26861563) /locus_tag="TCM_030381" /product="RAB GTPase A5A isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g31470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020064t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01650.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00556t00002" CDS join(26860487..26860889,26861181..26861515) /locus_tag="TCM_030381" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG020064t1" /codon_start=1 /product="RAB GTPase A5A isoform 2" /protein_id="EOY28908.1" /db_xref="Phytozome:POPTR_0006s01650.1" /db_xref="TAIR:AT5G47520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P19892" /translation="MQYAIHCCYGSIEWQSLGGWKMAFVSEEEKTEDYLFKIVLIGDS AVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEIKAQIWDTAGQERFRAVTS AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLRDAREVST AEGKALAEAQGLFFMETSALDSSNVAAAFQTVVKEIYNILSRKVMISHELKKQDASLN GKTVVLHGDETQQSDTGAKKGGWCCSS" CDS join(26860487..26860889,26861181..26861515) /locus_tag="TCM_030381" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG020064t1" /codon_start=1 /product="RAB GTPase A5A isoform 2" /protein_id="EOY28910.1" /db_xref="Phytozome:POPTR_0006s01650.1" /db_xref="TAIR:AT5G47520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P19892" /translation="MQYAIHCCYGSIEWQSLGGWKMAFVSEEEKTEDYLFKIVLIGDS AVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEIKAQIWDTAGQERFRAVTS AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLRDAREVST AEGKALAEAQGLFFMETSALDSSNVAAAFQTVVKEIYNILSRKVMISHELKKQDASLN GKTVVLHGDETQQSDTGAKKGGWCCSS" CDS join(26860550..26860889,26861181..26861515) /locus_tag="TCM_030381" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG020064t1" /codon_start=1 /product="RAB GTPase A5A isoform 1" /protein_id="EOY28907.1" /db_xref="Phytozome:POPTR_0006s01650.1" /db_xref="TAIR:AT5G47520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P19892" /translation="MAFVSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSK STIGVEFQTQKMDINGKEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTF DSIGRWLNELHTHSDMNVVTILVGNKSDLRDAREVSTAEGKALAEAQGLFFMETSALD SSNVAAAFQTVVKEIYNILSRKVMISHELKKQDASLNGKTVVLHGDETQQSDTGAKKG GWCCSS" CDS join(26860550..26860889,26861181..26861515) /locus_tag="TCM_030381" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG020064t1" /codon_start=1 /product="RAB GTPase A5A isoform 1" /protein_id="EOY28909.1" /db_xref="Phytozome:POPTR_0006s01650.1" /db_xref="TAIR:AT5G47520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P19892" /translation="MAFVSEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSK STIGVEFQTQKMDINGKEIKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTF DSIGRWLNELHTHSDMNVVTILVGNKSDLRDAREVSTAEGKALAEAQGLFFMETSALD SSNVAAAFQTVVKEIYNILSRKVMISHELKKQDASLNGKTVVLHGDETQQSDTGAKKG GWCCSS" gene complement(26862042..26865998) /locus_tag="TCM_030382" /note="dbxref CacaoGD:Thecc1EG030382" mRNA complement(join(26862042..26862592,26862880..26862948, 26863068..26863173,26863409..26863464,26863733..26863792, 26863871..26863955,26864726..26864820,26864949..26865077, 26865168..26865234,26865757..26865998)) /locus_tag="TCM_030382" /product="Uridylyltransferase-related" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016110001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044260t1" /inference="similar to AA sequence:ricco:29748.m000388" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17124t2" CDS complement(join(26862530..26862592,26862880..26862948, 26863068..26863173,26863409..26863464,26863733..26863792, 26863871..26863955,26864726..26864820,26864949..26865077, 26865168..26865234,26865757..26865899)) /locus_tag="TCM_030382" /note="dbxref ricco:29748.m000388; paralog of Thecc1EG044260t1" /codon_start=1 /product="Uridylyltransferase-related" /protein_id="EOY28911.1" /db_xref="TAIR:AT1G16880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0J709" /translation="MAVAMASAANCLVYFSSNTNKIPVFELKNHSWRAVFVSRPPNDL GKRSVSLSSSTMGITPPATPSATAVENDGSFGDTDTVPTPKVIIDQDSDPDVTLVEVT FGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNTFAITKASTGRKVEEPELLEAI RLTIINNLLEYHPESSSQLAMGAAFGVEPPKEKVDVDIATHISVNDDGPDRSLLYVET ADRPGLLVDLVKIITDINIAVESGEFDTEGLLAKAKFHVSYKSKAIIKPLQQVLANSL RYFLRRPTTEEASF" gene 26866173..26868127 /locus_tag="TCM_030383" /note="dbxref CacaoGD:Thecc1EG030383" mRNA join(26866173..26866826,26866928..26867036, 26867510..26867988,26868086..26868127) /locus_tag="TCM_030383" /product="Yippee family zinc-binding protein, putative" /inference="alignment:exonerate-protein:2:frave:gene19797" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015459t3" /inference="similar to AA sequence:frave:gene19797" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc401t12_C1" CDS join(26866684..26866826,26866928..26867036, 26867510..26867593) /locus_tag="TCM_030383" /note="dbxref frave:gene19797; paralog of Thecc1EG015459t3" /codon_start=1 /product="Yippee family zinc-binding protein, putative" /protein_id="EOY28912.1" /db_xref="TAIR:AT4G27745.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCV2" /translation="MGRLFIETLSGARIFKCKCCKVDSASHDDIVSKDFQGRFGRAYL FRNAVNIILGPTEERMLSSGLHTVNDIYCSSCQQILGWKYEKAYEESQKYKEGMFILE KERMFKEGW" gene complement(26868084..26872938) /locus_tag="TCM_030384" /note="dbxref CacaoGD:Thecc1EG030384" mRNA complement(join(26868084..26868933,26869632..26870827, 26871719..26871940)) /locus_tag="TCM_030384" /product="RNA-binding family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s01680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002303t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s01150.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc862t11; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9204t3" mRNA complement(join(26868084..26868830,26869068..26869171, 26869633..26870827,26871719..26871915)) /locus_tag="TCM_030384" /product="RNA-binding family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s01680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002303t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s01150.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc887t2_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9204t3" CDS complement(join(26868903..26868933,26869632..26870827, 26871719..26871940)) /locus_tag="TCM_030384" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG002303t1" /codon_start=1 /product="RNA-binding family protein isoform 5" /protein_id="EOY28917.1" /db_xref="Phytozome:POPTR_0016s01150.1" /db_xref="TAIR:AT3G07810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZHD1" /translation="MEMELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMRDRATG RARGFGFVVFADPAIAERVVMEKHMIDGRTVEAKKAVPRDDQNILNKSNVSIHGSPGP ARTKKIFVGGLASTVTESDFKRYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV DKVLQRTFHELNGKMVEVKRAVPKESSPGPSRNQLGGYNFGLSRVNSFLNGYMQGYNT SSVGGYGFRMEGRFSPVTAGRSGFPPLSPGYGMGLNFESNLSPSYGGSSNLGSNLSYG RGLYTSFNGNSNRFGSPFGYGGGSGGNSSILNSAGRNMWGNGSFNYATNSTTSSAIVG SGSGNSGVSSFGSIGALWDSSPSLGQGGGAASAYNGGNLRYGSGDFGVGSGGIGYGRN SNVAQLSTHGASNGGYDGAYANIYENGSFYGDSTWRSSPSDLERSSSFGFGLGDASSD VMTNNSADYIGGYSVTNRQANRGFSLPGLIKM" mRNA complement(join(26868904..26868933,26869100..26869171, 26869633..26870827,26871719..26871963,26872261..26872395, 26872556..26872938)) /locus_tag="TCM_030384" /product="RNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s01680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002303t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s01150.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9204t3" mRNA complement(join(26868908..26868933,26869070..26869171, 26869633..26870827,26871719..26871940)) /locus_tag="TCM_030384" /product="RNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s01680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002303t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s01150.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc862t9; alternateUTRof:Thecc1EG030384t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9204t3" mRNA complement(join(26868908..26868933,26869070..26870827, 26871719..26871940)) /locus_tag="TCM_030384" /product="RNA-binding family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s01680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002303t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s01150.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc862t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9204t3" CDS complement(join(26869158..26869171,26869633..26870827, 26871719..26871940)) /locus_tag="TCM_030384" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002303t1" /codon_start=1 /product="RNA-binding family protein isoform 1" /protein_id="EOY28913.1" /db_xref="Phytozome:POPTR_0016s01150.1" /db_xref="TAIR:AT3G07810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZHD1" /translation="MEMELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMRDRATG RARGFGFVVFADPAIAERVVMEKHMIDGRTVEAKKAVPRDDQNILNKSNVSIHGSPGP ARTKKIFVGGLASTVTESDFKRYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV DKVLQRTFHELNGKMVEVKRAVPKESSPGPSRNQLGGYNFGLSRVNSFLNGYMQGYNT SSVGGYGFRMEGRFSPVTAGRSGFPPLSPGYGMGLNFESNLSPSYGGSSNLGSNLSYG RGLYTSFNGNSNRFGSPFGYGGGSGGNSSILNSAGRNMWGNGSFNYATNSTTSSAIVG SGSGNSGVSSFGSIGALWDSSPSLGQGGGAASAYNGGNLRYGSGDFGVGSGGIGYGRN SNVAQLSTHGASNGGYDGAYANIYENGSFYGDSTWRSSPSDLERSSSFGFGLGDASSD VMTNNSADYIGGYSVTNRQANRGIAA" CDS complement(join(26869158..26869171,26869633..26870827, 26871719..26871940)) /locus_tag="TCM_030384" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002303t1" /codon_start=1 /product="RNA-binding family protein isoform 1" /protein_id="EOY28914.1" /db_xref="Phytozome:POPTR_0016s01150.1" /db_xref="TAIR:AT3G07810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZHD1" /translation="MEMELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMRDRATG RARGFGFVVFADPAIAERVVMEKHMIDGRTVEAKKAVPRDDQNILNKSNVSIHGSPGP ARTKKIFVGGLASTVTESDFKRYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV DKVLQRTFHELNGKMVEVKRAVPKESSPGPSRNQLGGYNFGLSRVNSFLNGYMQGYNT SSVGGYGFRMEGRFSPVTAGRSGFPPLSPGYGMGLNFESNLSPSYGGSSNLGSNLSYG RGLYTSFNGNSNRFGSPFGYGGGSGGNSSILNSAGRNMWGNGSFNYATNSTTSSAIVG SGSGNSGVSSFGSIGALWDSSPSLGQGGGAASAYNGGNLRYGSGDFGVGSGGIGYGRN SNVAQLSTHGASNGGYDGAYANIYENGSFYGDSTWRSSPSDLERSSSFGFGLGDASSD VMTNNSADYIGGYSVTNRQANRGIAA" CDS complement(join(26869158..26869171,26869633..26870827, 26871719..26871829)) /locus_tag="TCM_030384" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG002303t1" /codon_start=1 /product="RNA-binding family protein isoform 4" /protein_id="EOY28916.1" /db_xref="Phytozome:POPTR_0016s01150.1" /db_xref="TAIR:AT3G07810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZHD1" /translation="MRDRATGRARGFGFVVFADPAIAERVVMEKHMIDGRTVEAKKAV PRDDQNILNKSNVSIHGSPGPARTKKIFVGGLASTVTESDFKRYFDQFGTITDVVVMY DHNTQRPRGFGFITYDSEEAVDKVLQRTFHELNGKMVEVKRAVPKESSPGPSRNQLGG YNFGLSRVNSFLNGYMQGYNTSSVGGYGFRMEGRFSPVTAGRSGFPPLSPGYGMGLNF ESNLSPSYGGSSNLGSNLSYGRGLYTSFNGNSNRFGSPFGYGGGSGGNSSILNSAGRN MWGNGSFNYATNSTTSSAIVGSGSGNSGVSSFGSIGALWDSSPSLGQGGGAASAYNGG NLRYGSGDFGVGSGGIGYGRNSNVAQLSTHGASNGGYDGAYANIYENGSFYGDSTWRS SPSDLERSSSFGFGLGDASSDVMTNNSADYIGGYSVTNRQANRGIAA" CDS complement(join(26869556..26870827,26871719..26871940)) /locus_tag="TCM_030384" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG002303t1" /codon_start=1 /product="RNA-binding family protein isoform 3" /protein_id="EOY28915.1" /db_xref="Phytozome:POPTR_0016s01150.1" /db_xref="TAIR:AT3G07810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZHD1" /translation="MEMELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMRDRATG RARGFGFVVFADPAIAERVVMEKHMIDGRTVEAKKAVPRDDQNILNKSNVSIHGSPGP ARTKKIFVGGLASTVTESDFKRYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV DKVLQRTFHELNGKMVEVKRAVPKESSPGPSRNQLGGYNFGLSRVNSFLNGYMQGYNT SSVGGYGFRMEGRFSPVTAGRSGFPPLSPGYGMGLNFESNLSPSYGGSSNLGSNLSYG RGLYTSFNGNSNRFGSPFGYGGGSGGNSSILNSAGRNMWGNGSFNYATNSTTSSAIVG SGSGNSGVSSFGSIGALWDSSPSLGQGGGAASAYNGGNLRYGSGDFGVGSGGIGYGRN SNVAQLSTHGASNGGYDGAYANIYENGSFYGDSTWRSSPSDLERSSSFGFGLGDASSD VMTNNSADYIGGYSVTNRQANRGMTSLLCRFTFLYSPLFILPCSCTY" gene 26873373..26878296 /locus_tag="TCM_030385" /note="dbxref CacaoGD:Thecc1EG030385" mRNA join(26873373..26873616,26875813..26876520, 26876835..26878296) /locus_tag="TCM_030385" /product="Tetratricopeptide repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01002055001" /inference="similar to AA sequence:Phytozome:GSVIVT01002055001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc699t5" gene 26873703..26874966 /locus_tag="TCM_030386" /note="dbxref CacaoGD:Thecc1EG030386" mRNA 26873703..26874966 /locus_tag="TCM_030386" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.44 coverage" CDS 26874140..26874349 /locus_tag="TCM_030386" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28919.1" /translation="MTLQPYNTNLPSPPQQPHLPSLPSLFLLLLKFNLNKQITFPSVL SLYPFPGFSSCKPGFVYHYDPSLRC" CDS join(26876177..26876520,26876835..26878128) /locus_tag="TCM_030385" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein" /protein_id="EOY28918.1" /db_xref="Phytozome:GSVIVT01002055001" /db_xref="TAIR:AT4G16470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I2E4" /translation="MLSTISRMKSMIFPTFSPPSLHFPKTIPFAFFSLASKEPNLRNL PTLQNPKFLHLKPTMPSPGTPIFSTPSRNLHTETSQSSSPCGEVHVIVGPMFAGKTTT LLRKIQSESSNGSFQAKPRKNYIQLNKALRGLCFAGRLSEAVGLLWRTRLKADAGTYA LLLQECIFRKEYKNGRRIHAQMVVVGYVPNEYLKIKLLILYAKLGDLETAHALFDKLL EKNLISWNAMIAGFVQKGCGEFGLDLYYKMRKNGLTPDQYTFASVFRACASLATLEHG KRAHGILIKSPITENVVVSSALMDMYFKCSSLTHGHQVFDEVVYRNVVTWTSLISGYG QHGRVIEVLESFDKMKNEGFRPNYVTFLAVLSACSHGGLVDKGWHYFLSMTRDYGMQP RGQHYAAMVDLIGRSGKLREAYEFILNSSFKEHPAIWGALLGACRIHGDIDLIKLAAD KYFELDPENAGKYVVLSNAYATFGFWDNVASLRRMMRNSGVKKEPAYSRIEIQGEVHF FLRGDISHKHSAEIYELIKLMTSILKDAGYVPDINGT" gene 26878343..26880027 /locus_tag="TCM_030387" /note="dbxref CacaoGD:Thecc1EG030387" mRNA join(26878343..26878585,26878717..26878756, 26878836..26878980,26879292..26879413,26879515..26880027) /locus_tag="TCM_030387" /product="Thymidine kinase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01002055001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002307t1" /inference="similar to AA sequence:Phytozome:GSVIVT01002055001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc688t4_C2" CDS join(26878531..26878585,26878717..26878756, 26878836..26878980,26879292..26879413,26879515..26879770) /locus_tag="TCM_030387" /note="paralog of Thecc1EG002307t1" /codon_start=1 /product="Thymidine kinase" /protein_id="EOY28920.1" /db_xref="Phytozome:GSVIVT01002055001" /db_xref="TAIR:AT3G07800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I2E4" /translation="MLLNLGHDLVLIYCHVIVGTSILYYVLDILVKTVAVIKSNKDTR YALDSIVTHDGMKLPCWALANLSSFRQKIGPDTYDQLDVIGIDEAQFFEDLYDFCCEA ADRDGKTVIVAGLDGNYLRRSFGSVLDIIPLADSVMKLTARCELCGKRAFFTLRKTDE TQTELIGGADVYMPVCRQHYVNGQVVIEATRSVLESQKLQCGSYT" gene complement(26880030..26881388) /locus_tag="TCM_030388" /note="dbxref CacaoGD:Thecc1EG030388" mRNA complement(26880030..26881388) /locus_tag="TCM_030388" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01037773001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002311t1" /inference="similar to AA sequence:Phytozome:GSVIVT01037773001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9013t1" CDS complement(26880383..26881282) /locus_tag="TCM_030388" /note="paralog of Thecc1EG002311t1" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY28921.1" /db_xref="Phytozome:GSVIVT01037773001" /db_xref="TAIR:AT5G55560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0D541" /translation="MSDLSSCGSSDKDVEPFVEVDPTGRFGRYPDLLGAGATKQVYRA FDQEEGREVAWNQISLTKFMDNDYIIKKLYAEVGLLAKLDNKNVISLFSYWTDYEHNR LNFITEVCTSGNLRDYRKKHRRYVTINAVKMWSRQILKGLEYLHMHEPCIIHRDLNCS NVFINGNAGEIKIGDFGFATVVGKNHIAQSVIGTPEFMAPELFEENYTEAVDIYSFGM CLLELITQELPYSECDSIAKIYKKVSAGVMPEAIDKVKDPKAKAIIKKCLVKQSERPS ATQLLADSFFHGLDQDENYDEAF" gene complement(26881490..26887040) /locus_tag="TCM_030389" /note="dbxref CacaoGD:Thecc1EG030389" mRNA complement(join(26881490..26882784,26884538..26884607, 26884905..26885154,26885244..26885407,26885523..26885685, 26885788..26886301,26886412..26887040)) /locus_tag="TCM_030389" /product="Uncharacterized protein" /inference="similar to AA sequence:frave:gene19799" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage; weak similarity to Pumilio 12" CDS complement(join(26882474..26882784,26884538..26884607, 26884905..26885154,26885244..26885407,26885523..26885685, 26885788..26886301,26886412..26886637)) /locus_tag="TCM_030389" /note="dbxref frave:gene19799; weak similarity to Pumilio 12" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28922.1" /db_xref="TAIR:AT5G56510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AXD3" /translation="MENTVSSSSDSQNLKASLRSNSPDNNLSLSLQNLRLNPGVENDS ACVYPGNNALRLPSNQSFARAMLNGYSSTSNGNRSGETMTTDRTSVGRDSLFNNNFNL FSGLARQTSPTSFQHEPIAEGGSNVSYGFDNGRPAGNPGGFWFQQSLDHAHLPQMNTI IIENALTQDGSDIIKDLLSLKEPRITNKIFEGVIDFMFELMINQHGHNVFAELIKLCS DDQLGMIIEKITSHAPLGGIISASKTRTGSRSIKKLIELLKKSSLIIKVIAALKEGFY ELMISQTGSSVILKCVDLIDTRSNELLYVAAIEQSLKLAVNARGCISLNYFIDNIRGL HRIALLHVIAKNSLYLSQDPSGNYVLQKVVELDNPDIIQEICAQLNGHIVKLSMQKAG SHVVEKMLNSRGMHPVVKELLESKQLLQVAKDQYGNYVVQTALKASKLEDVIINLHDL SDAAHSLAFQRAAGQTGILFVHPEDNVTYKLSSTLTVLPPGSSSVDELSHIPSPYGAA SLPLPSGTGHETYIQMSTKFPLFFTDASVSVTGDRNPFLCLGQIERIMFVYSKVNVT" mobile_element complement(26883202..26883597) /note="source:MITE_PIF_Tourist_7 2 404" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(26883471..26883482) /note="source:scaffold_4_CACTA_0482 4487 4629" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26883483..26883612) /note="source:CACAO_Mariner_E11_scaffold_1 986 1115" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(26887131..26889763) /locus_tag="TCM_030391" /note="dbxref CacaoGD:Thecc1EG030391" mRNA complement(join(26887131..26887549,26888299..26888406, 26888545..26888691,26888787..26889212,26889504..26889539, 26889636..26889763)) /locus_tag="TCM_030391" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08303t00001" mRNA complement(join(26887215..26887549,26887885..26887993, 26888299..26888406,26888545..26888691,26888787..26889212, 26889504..26889556)) /locus_tag="TCM_030391" /product="Uncharacterized protein isoform 2" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9038t1; alternateUTRof:Thecc1EG030391t2; inference alignment:Newbler:10:TSA:cgbaL_g08303t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc339t6" mRNA complement(join(26887215..26887549,26887885..26887993, 26888299..26888406,26888545..26888691,26888787..26889212, 26889328..26889492)) /locus_tag="TCM_030391" /product="Uncharacterized protein isoform 2" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9038t2; alternateUTRof:Thecc1EG030391t2; inference alignment:Newbler:10:TSA:cgbaL_g08303t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc339t6" mRNA complement(join(26887237..26887549,26887885..26887993, 26888299..26888406,26888545..26888691,26888787..26889209, 26889329..26889425,26889504..26889539,26889636..26889692)) /locus_tag="TCM_030391" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08303t00001; inference alignment:Newbler:10:TSA:cgbaL_g08303t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc339t6" CDS complement(join(26887458..26887549,26888299..26888406, 26888545..26888691,26888787..26889153)) /locus_tag="TCM_030391" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY28923.1" /translation="MMMEGLESGSELRKELERERRRIRDRQRRQSMSLEEREKHLARR RRNYQLRRQRAETARLNPAPPIQLQQTSISSVQLSLSNAATCVSDVSPHFDDAAAAAA GLVGSNHGQERPMPDTRSCQSLEIPAHKLAILPGKVRLNRIKHLARAMNDPVGDGVAV GGMMRENGASDCLVSRGLRLNRVKRLARALNPAAQETVSQSHQSITEDWRTKMIAIAE RSITDVENSLEKRVRDIQN" mRNA complement(join(26887497..26887549,26887931..26887993, 26888299..26888406,26888545..26888691,26888787..26889212, 26889328..26889425,26889504..26889535)) /locus_tag="TCM_030391" /product="Uncharacterized protein isoform 2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12534t00001; alternateUTRof:Thecc1EG030391t2; inference alignment:Newbler:10:TSA:cgbaL_g08303t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc339t6" CDS complement(join(26887989..26887993,26888299..26888406, 26888545..26888691,26888787..26889153)) /locus_tag="TCM_030391" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY28924.1" /translation="MMMEGLESGSELRKELERERRRIRDRQRRQSMSLEEREKHLARR RRNYQLRRQRAETARLNPAPPIQLQQTSISSVQLSLSNAATCVSDVSPHFDDAAAAAA GLVGSNHGQERPMPDTRSCQSLEIPAHKLAILPGKVRLNRIKHLARAMNDPVGDGVAV GGMMRENGASDCLVSRGLRLNRVKRLARALNPAAQETVSQSHQSITEG" CDS complement(join(26887989..26887993,26888299..26888406, 26888545..26888691,26888787..26889153)) /locus_tag="TCM_030391" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY28925.1" /translation="MMMEGLESGSELRKELERERRRIRDRQRRQSMSLEEREKHLARR RRNYQLRRQRAETARLNPAPPIQLQQTSISSVQLSLSNAATCVSDVSPHFDDAAAAAA GLVGSNHGQERPMPDTRSCQSLEIPAHKLAILPGKVRLNRIKHLARAMNDPVGDGVAV GGMMRENGASDCLVSRGLRLNRVKRLARALNPAAQETVSQSHQSITEG" CDS complement(join(26887989..26887993,26888299..26888406, 26888545..26888691,26888787..26889153)) /locus_tag="TCM_030391" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY28926.1" /translation="MMMEGLESGSELRKELERERRRIRDRQRRQSMSLEEREKHLARR RRNYQLRRQRAETARLNPAPPIQLQQTSISSVQLSLSNAATCVSDVSPHFDDAAAAAA GLVGSNHGQERPMPDTRSCQSLEIPAHKLAILPGKVRLNRIKHLARAMNDPVGDGVAV GGMMRENGASDCLVSRGLRLNRVKRLARALNPAAQETVSQSHQSITEG" CDS complement(join(26887989..26887993,26888299..26888406, 26888545..26888691,26888787..26889153)) /locus_tag="TCM_030391" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY28927.1" /translation="MMMEGLESGSELRKELERERRRIRDRQRRQSMSLEEREKHLARR RRNYQLRRQRAETARLNPAPPIQLQQTSISSVQLSLSNAATCVSDVSPHFDDAAAAAA GLVGSNHGQERPMPDTRSCQSLEIPAHKLAILPGKVRLNRIKHLARAMNDPVGDGVAV GGMMRENGASDCLVSRGLRLNRVKRLARALNPAAQETVSQSHQSITEG" mRNA complement(join(<26888377..26888418,26888545..26888691, 26888787..26889212,26889328..26889539,26889636..26889757)) /locus_tag="TCM_030391" /product="Uncharacterized protein isoform 6" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is medium, protein is partial3; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc349t9; inference alignment:Newbler:10:TSA:cgbaL_g08303t00001" CDS complement(join(<26888378..26888418,26888545..26888691, 26888787..26889153)) /locus_tag="TCM_030391" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 6" /protein_id="EOY28928.1" /translation="MMMEGLESGSELRKELERERRRIRDRQRRQSMSLEEREKHLARR RRNYQLRRQRAETARLNPAPPIQLQQTSISSVQLSLSNAATCVSDVSPHFDDAAAAAA GLVGSNHGQERPMPDTRSCQSLEIPAHKLAILPGKVRLNRIKHLARAMNDPVGDGVAV GGMMRENGASDYHCSGLVSRGLRLN" gene 26889515..26891809 /locus_tag="TCM_030392" /note="dbxref CacaoGD:Thecc1EG030392" mRNA join(26889515..26889539,26889636..26890296, 26890472..26890831,26891302..26891786) /locus_tag="TCM_030392" /product="TRNA--methyltransferase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s00680.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s00680.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc962t4; alternateUTRof:Thecc1EG030392t1; inference alignment:Newbler:10:TSA:cgbaP2_g10847t00001" mRNA join(26889855..26890296,26890472..26890831, 26891302..26891809) /locus_tag="TCM_030392" /product="TRNA--methyltransferase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s00680.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s00680.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10847t00001" CDS join(26889895..26890296,26890472..26890831, 26891302..26891511) /locus_tag="TCM_030392" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="TRNA--methyltransferase isoform 1" /protein_id="EOY28929.1" /db_xref="Phytozome:POPTR_0006s00680.1" /db_xref="TAIR:AT5G47680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HC28" /translation="MEAAQKEQNSEENTSNPQPQPLSKSAQKKLLKQQKFEAKKAEKK AWMKEQKQRDAERKRKEWEEKLAGLSEDERLKLIDSRKELRRERMEKRSEERGQKIER LTKAKENGQNIVVDLEFSHLMTHSEIHSLVQQIMYCYAVNGRSSVPAHLWLTGCQGEM ETQLRRLPGFDKWIIEKEKQSYIQAFSDQKHNLVYLTADSETVLDELDLSKVYIVGGL VDRNRWKGITMKKAEEQGIHTAKLPIGTYMKMSSSQVLTVNQVIEILLKFLETRDWKA SFFQVIPQRKRSEADSETCQELDGEECEEDNDESERKKKCIEEPSHD" CDS join(26889895..26890296,26890472..26890831, 26891302..26891511) /locus_tag="TCM_030392" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="TRNA--methyltransferase isoform 1" /protein_id="EOY28930.1" /db_xref="Phytozome:POPTR_0006s00680.1" /db_xref="TAIR:AT5G47680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HC28" /translation="MEAAQKEQNSEENTSNPQPQPLSKSAQKKLLKQQKFEAKKAEKK AWMKEQKQRDAERKRKEWEEKLAGLSEDERLKLIDSRKELRRERMEKRSEERGQKIER LTKAKENGQNIVVDLEFSHLMTHSEIHSLVQQIMYCYAVNGRSSVPAHLWLTGCQGEM ETQLRRLPGFDKWIIEKEKQSYIQAFSDQKHNLVYLTADSETVLDELDLSKVYIVGGL VDRNRWKGITMKKAEEQGIHTAKLPIGTYMKMSSSQVLTVNQVIEILLKFLETRDWKA SFFQVIPQRKRSEADSETCQELDGEECEEDNDESERKKKCIEEPSHD" gene complement(26891915..26895768) /locus_tag="TCM_030393" /note="dbxref CacaoGD:Thecc1EG030393" mRNA complement(join(26891915..26894566,26894662..26894711, 26895712..26895768)) /locus_tag="TCM_030393" /product="SCL domain class transcription factor" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s01110.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002319t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s01110.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17116t1" CDS complement(26892769..26894415) /locus_tag="TCM_030393" /note="paralog of Thecc1EG002319t1" /codon_start=1 /product="SCL domain class transcription factor" /protein_id="EOY28931.1" /db_xref="Phytozome:POPTR_0016s01110.1" /db_xref="TAIR:AT4G17230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZJB2" /translation="MQTSQKHQTSACIRRLYHQPVQEMEALCLPHIQILDNNVCSDVG SQGTSVSFQTYKDQFFTLESSTATAGFVVYDSPSAVSISSSRSPFSPQGSQSYLSDPH HSPDNTYGSPFSGSSVVDDGNEWKHKLRELEISLLGPESDVIDSCNCCFSSGAHQAAS MASFNCNQLVEMIPRLDLKQVLVACGQALHEGDMPTVAGLMHVLEKMVSVSGEPIQRL GAYVLEGLRARLESSGSSIYKALKCKEPTSSELMSYMHILFKVCPFWKFAYTSANVVI REVMEYEPKIHIIDFQIAQGTQWMFLIAALAKRPGGPPAIRITGIDDSQSNHARGGGL NIVGQRLSEFAKTYNVPFEFHDAAMSGCEVQLEHLKVQPGEALAVNFPYVLHHMPDES VSTWNHRDRLLRLVKSLLPKIVTLVEQESNTNTSPFFSRYLETLDYYTAMFESIDVAC SRDDKQRINAEQHCVARDIVNMIACEGPERVERHELFGKWRSRFTMAGFSPYPLSSSV TMAVRDVLKDYNNNYRLEEREGALYLGWINRAMATSSAWR" gene complement(26904196..26904878) /locus_tag="TCM_030394" /note="dbxref CacaoGD:Thecc1EG030394" mRNA complement(join(26904196..26904464,26904643..26904878)) /locus_tag="TCM_030394" /product="NADH-ubiquinone oxidoreductase 21 kDa subunit" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s01740.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01740.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17140t1" CDS complement(join(26904301..26904464,26904643..26904796)) /locus_tag="TCM_030394" /codon_start=1 /product="NADH-ubiquinone oxidoreductase 21 kDa subunit" /protein_id="EOY28932.1" /db_xref="Phytozome:POPTR_0006s01740.1" /db_xref="TAIR:AT4G16450.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84W12" /translation="MNTDITASAKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTLTGVS VTVGYLSGIKPGLKGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQKRG FKN" mobile_element complement(26905454..26910769) /note="source:INTACT68_F132_scaffold_6-int 1 5310" /mobile_element_type="retrotransposon:LTR/Copia" gene 26912183..26913415 /locus_tag="TCM_030397" /note="dbxref CacaoGD:Thecc1EG030397" mRNA 26912183..26913415 /locus_tag="TCM_030397" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage" CDS 26912588..26912992 /locus_tag="TCM_030397" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28933.1" /translation="MGRESINDPTIVFQSSIALLQERFRQLQRMKEMREERELLRKHA EPKQCNPTLPYEPSRLFFHFLPPRSPPPQVPFSIWSGSQHRCSGTDSQSTEAPLFESL LPTASKIPDSMHVSQNKFDDSDCDDVDTSLHL" gene 26914037..26915397 /locus_tag="TCM_030398" /note="dbxref CacaoGD:Thecc1EG030398" mRNA join(26914037..26914170,26914268..26914519, 26915160..26915397) /locus_tag="TCM_030398" /product="Carbohydrate-binding X8 domain superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s01780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002325t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01780.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06088t00001" CDS join(26914047..26914170,26914268..26914519, 26915160..26915194) /locus_tag="TCM_030398" /note="paralog of Thecc1EG002325t1" /codon_start=1 /product="Carbohydrate-binding X8 domain superfamily protein" /protein_id="EOY28934.1" /db_xref="Phytozome:POPTR_0006s01780.1" /db_xref="TAIR:AT5G35740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZHC1" /translation="MPNLLSWIHTSATPPESATMPSALHWTLLALCFVSLILQKTDAQ FREWCIADEQTPDDELQKALDWACGKGGADCSKIQVNQPCYLPNTIRDHASYAFNNYY QKFKNKGATCYFNSAAMITDLDPSHHSCKFVSVP" gene complement(26915601..26917207) /locus_tag="TCM_030399" /note="dbxref CacaoGD:Thecc1EG030399" mRNA complement(join(26915601..26916824,26917057..26917207)) /locus_tag="TCM_030399" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.49 coverage" CDS complement(join(26916600..26916824,26917057..26917155)) /locus_tag="TCM_030399" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28935.1" /translation="MAKRDRSNRDAFFRVVFLGRGNGFVVPRKGSDKVLGSSFVVGSL VGWFYSLDDVLASTCSHDVRTRKSSEETSSQDHAPFSSVCRGLPLVCSRAKQDLHLQD TCSMQ" gene 26916902..26920087 /locus_tag="TCM_030401" /note="dbxref CacaoGD:Thecc1EG030401" mRNA join(26916902..26917776,26917885..26918017, 26918795..26918955,26919380..>26919491) /locus_tag="TCM_030401" /product="CASP-like protein POPTRDRAFT_818956 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29826.m000762" /inference="similar to AA sequence:Phytozome:Glyma09g01470.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc692t4; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc692t4" mRNA join(26917056..26917778,26917885..26918017, 26919380..26920087) /locus_tag="TCM_030401" /product="CASP-like protein POPTRDRAFT_818956 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29826.m000762" /inference="similar to AA sequence:Phytozome:POPTR_0006s01790.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc692t4" CDS join(26917555..26917778,26917885..26918017, 26919380..26919631) /locus_tag="TCM_030401" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="CASP-like protein POPTRDRAFT_818956 isoform 1" /protein_id="EOY28936.1" /db_xref="Phytozome:POPTR_0006s01790.1" /db_xref="TAIR:AT2G35760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD38" /translation="MNYLGVGVSPGNVPVYHATNLKVIDRRVRVAELVLRCVICVLSV LAAVLVATDTQVKEIFSIQKKARFTDMKALVFLVVANGVAAAYSLIQGVRCVVAMVRG SVLFSKPFAWAIFSGDQALAYLTVAAVGAAAQSAVFGKLGQTELQWLKICSMYGKFCN QVGDGVAMALLVSLGMVALSCISAFSLFRLYGSTKARNNSRR" CDS join(26917555..26917776,26917885..26918017, 26918795..26918955,26919380..>26919490) /locus_tag="TCM_030401" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="CASP-like protein POPTRDRAFT_818956 isoform 2" /protein_id="EOY28937.1" /db_xref="Phytozome:Glyma09g01470.1" /db_xref="TAIR:AT2G35760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD38" /translation="MNYLGVGVSPGNVPVYHATNLKVIDRRVRVAELVLRCVICVLSV LAAVLVATDTQVKEIFSIQKKARFTDMKALVFGGSQWGSCSLLIDTRGALCCGYGERK CAFQQAFCLGHFLWRSVNRRLMLDLKCWSVSWYEKNNDLMHQTEASRGFENPTNAGVE RRKSCRKMLANNALAYLTVAAVGAAAQSAVFGKLGQTELQWLKICSMYG" gene 26920543..26927587 /locus_tag="TCM_030403" /note="dbxref CacaoGD:Thecc1EG030403" mRNA join(26920543..26920910,26921165..26921238, 26921525..26921678,26922260..26922446,26922634..26922760, 26923496..26923673,26923790..26923839,26923913..26924084, 26924329..26924455,26924583..26924674,26925355..26925503, 26925907..26925945,26926045..26926578,26926943..26927096, 26927308..26927587) /locus_tag="TCM_030403" /product="Ferredoxin hydrogenases" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007214001" /inference="similar to AA sequence:Phytozome:GSVIVT01007214001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9056t4" CDS join(26920788..26920910,26921165..26921238, 26921525..26921678,26922260..26922446,26922634..26922760, 26923496..26923673,26923790..26923839,26923913..26924084, 26924329..26924455,26924583..26924674,26925355..26925503, 26925907..26925945,26926045..26926162) /locus_tag="TCM_030403" /codon_start=1 /product="Ferredoxin hydrogenases" /protein_id="EOY28938.1" /db_xref="Phytozome:GSVIVT01007214001" /db_xref="TAIR:AT4G16440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94CL6" /translation="MSEKFSPTLRIGDLSDFIAPSQACVVSLKGLKATPNKPEPQARV STVKSQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIVSLSPQ SRASLAAHFGITPLQVFKKLTTFLKSLGVKAVFDTSCSRDLALIETCNEFISRYKQSQ AADDAKTKSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQSMGATVKHHICQT MGFRPEEVYHVTVMPCYDKKLEAAREDFVSQVGSDDGSHANEGVCITEVDSVLTSGEL LDLIQLKEVDFKALEESPLDRMLTNVDDEGHLYGVSGGSGGYAETVFRYAAKVLFGRE IDGPLDFRIIRNPDFRELTLEVEGRTVLKFALCYGFQNLQNIVRKVKTRKCDYQYVEV MACPSGCLNGGGQIKPKPGQSPKDLIKSLEAIYMENILEADPFKNPLVKRLYDEWLEH PGSEKAKRHMHTGYHPVVKSITAQLHNWFGGCLYRYNVIHISLNCGSLKICTLTPRAS SLAGNQNSRTSCFISQNNLRP" mobile_element complement(26923068..26923119) /note="source:CACAO_M_E42586_F54_scaffold_5 1774 1826" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26927647..26930109) /locus_tag="TCM_030405" /note="dbxref CacaoGD:Thecc1EG030405" mRNA complement(join(26927647..26928132,26928245..26928349, 26928570..26928668,26928949..26929167,26929314..26930059)) /locus_tag="TCM_030405" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29826.m000759" /inference="similar to AA sequence:ricco:29826.m000759" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06917t00001" CDS complement(join(26927908..26928132,26928245..26928349, 26928570..26928668,26928949..26929167,26929314..26929844)) /locus_tag="TCM_030405" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29826.m000759" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY28939.1" /db_xref="TAIR:AT4G17240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD41" /translation="MATRYKSYDARSSTSSHFSDPSSSMELNKSSSRRPESSSSSSSS RALVKSKPLDVGPGSRSKTKADNNLTSMVKRFMDKKSTNKTIGQGQLVIPSDVLAEDL KKAERKGAAFTALQRKLFGKGSADKKEVKALTEVKGNTRTLAMVLRSERELLSANKDQ EMEIAELKLLLQDKNREVEKLKDLCLKQREEIKSLKSAILFPDVMNSQLQEIVEKQGS ELTQAKQLIPTLQRQVTSLTGQLQCLAQDLAQVKADKYSARAFHQRHGSSPRTPRYDR EEPSDSLEFSSADATTPGSPDDLFLEDLNPCLTPYYTKTKSKEFDEIGFNSPHNESLS KNNKQTFTELGFSSRSKKLSKSSDCYQDSNRGSSMARTNRRSDESTGSYRKQMHHKPF " mRNA complement(join(<26928019..26928046,26928245..26928349, 26928570..26928668,26928949..26929167,26929314..26930109)) /locus_tag="TCM_030405" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29826.m000759" /inference="similar to AA sequence:ricco:29826.m000759" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc615t1; inference alignment:Newbler:10:TSA:cgbaB_g06917t00001" CDS complement(join(<26928020..26928046,26928245..26928349, 26928570..26928668,26928949..26929167,26929314..26929844)) /locus_tag="TCM_030405" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29826.m000759" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY28940.1" /db_xref="TAIR:AT4G17240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD41" /translation="MATRYKSYDARSSTSSHFSDPSSSMELNKSSSRRPESSSSSSSS RALVKSKPLDVGPGSRSKTKADNNLTSMVKRFMDKKSTNKTIGQGQLVIPSDVLAEDL KKAERKGAAFTALQRKLFGKGSADKKEVKALTEVKGNTRTLAMVLRSERELLSANKDQ EMEIAELKLLLQDKNREVEKLKDLCLKQREEIKSLKSAILFPDVMNSQLQEIVEKQGS ELTQAKQLIPTLQRQVTSLTGQLQCLAQDLAQVKADKYSARAFHQRHGSSPRTPRYDR EEPSDSLEFSSADATTPGSPDDLFLEDLNPCLTPYYTKTKSKFSQQEVVQE" gene complement(26930359..26931688) /locus_tag="TCM_030406" /note="dbxref CacaoGD:Thecc1EG030406" mRNA complement(26930359..26931688) /locus_tag="TCM_030406" /product="Serine acetyltransferase 3, mitochondrial, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003478001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030673t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400038387" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12549t00001" CDS complement(26930643..26931614) /locus_tag="TCM_030406" /note="paralog of Thecc1EG030673t1" /codon_start=1 /product="Serine acetyltransferase 3, mitochondrial, putative" /protein_id="EOY28941.1" /db_xref="Phytozome:PGSC0003DMP400038387" /db_xref="TAIR:AT1G55920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S9Q4" /translation="MAACIDNPKGEPANKWCRLRSSERLACCSLCRFAKVCGPSFSNL VSCRAINWVSVKIPDTTVCPCDEDEDEDDLWVKIREEAQSDAKQEPILLNYYYSLVLS HSSLEIALANHLAMKLSNSTLSRDAVFKVFLEAFAQDHEIKRAISDDTKATRQRDPAC ISYVHCFLHFKGFQACQAHRAAHKLWSQGRLSLALLIQSRVSEVFAVDIHPAAKIGRG IVLDHATGIVIGETAVIGDHVTILHNVTLGGTGKVLGDRHPKIGNGVLIGAGTKILGN IRVGEGAKIGAGSLVLKEVPPHSTAVGNPARVLTTPTVQANREHSHQ" gene 26933827..26939453 /locus_tag="TCM_030408" /note="dbxref CacaoGD:Thecc1EG030408" mRNA join(26933827..26934424,26935170..26935225, 26935996..26936174,26936459..26936524,26936670..26936795, 26936883..26936958,26937194..26937257,26937341..26937387, 26937532..26937636,26937900..26938110,26938237..26938447, 26938592..26938858,26939076..26939453) /locus_tag="TCM_030408" /product="Histone acetyltransferase complex component isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g12400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011282t4" /inference="similar to AA sequence:ricco:29826.m000753" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9058t2" CDS join(26934372..26934424,26935170..26935225, 26935996..26936174,26936459..26936524,26936670..26936795, 26936883..26936958,26937194..26937257,26937341..26937387, 26937532..26937636,26937900..26938110,26938237..26938447, 26938592..26938858,26939076..26939267) /locus_tag="TCM_030408" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29826.m000753; paralog of Thecc1EG011282t4" /codon_start=1 /product="Histone acetyltransferase complex component isoform 1" /protein_id="EOY28942.1" /db_xref="TAIR:AT4G16420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IH29" /translation="MGRSRGNFHSADEDPTQRSRRKKNASAGENLESSSSGQGTNDGK RALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFP LICPDWNADDEILLLEGIEMYGLGNWAEVAEHVGTKTKEKCIEHYDNVYMKSPFFPLP DMSHVVGKNRKELLAMAKGHGEDKKGSSMLGELTVKEESPFSPSRVKVEGGPSGRLLS GLNADVESGVRSSSSSTTPAAVNKASNMAQVKDGNVKMEDPQMDRKGKKPNSLGNDGL VELSGYNPKRQEFDPEYDNDAEQLLAEMEFKDTDTEEEHEIKLRVLRIYSKRLDERKR RKDFILERNLLYPNPFEKDLTPEERALCRRYDVFMRFLSKEEHEDLLQTIVSEHRTLK RIEELKEARAAGCRTSAEADRYLELKRKREAEESSHRAKDGVHVNPSGQGGPNSFMAS ESVAKDSNSRPTAQASSSFATDLDIMGFSETQLLSEAEKRLCSEIRLPPPLYLRMLQI ISEEIFSGNVTKKSDAHRLFKLDPSKTDRVYDMLVKKGIAPP" mRNA join(26936146..26936174,26936459..26936524, 26936670..26936795,26936883..26936958,26937194..26937257, 26937341..26937387,26937532..26937636,26937900..26938110, 26938237..26938447,26938592..26938858,26938946..26939105) /locus_tag="TCM_030408" /product="ADA2 2B isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g12400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011282t3" /inference="similar to AA sequence:ricco:29826.m000753" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc724t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9058t2" mRNA join(26936146..26936174,26936459..26936524, 26936670..26936795,26936883..26936958,26937194..26937257, 26937341..26937387,26937532..26937636,26937900..26938110, 26938237..26938447,26938592..26938858,26938973..26939105) /locus_tag="TCM_030408" /product="ADA2 2B isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g12400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011282t2" /inference="similar to AA sequence:ricco:29826.m000753" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc724t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9058t2" CDS join(26936172..26936174,26936459..26936524, 26936670..26936795,26936883..26936958,26937194..26937257, 26937341..26937387,26937532..26937636,26937900..26938110, 26938237..26938447,26938592..26938858,26938946..26939038) /locus_tag="TCM_030408" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29826.m000753; paralog of Thecc1EG011282t3" /codon_start=1 /product="ADA2 2B isoform 2" /protein_id="EOY28943.1" /db_xref="TAIR:AT4G16420.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IH29" /translation="MDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEVAEHVGTKT KEKCIEHYDNVYMKSPFFPLPDMSHVVGKNRKELLAMAKGHGEDKKGSSMLGELTVKE ESPFSPSRVKVEGGPSGRLLSGLNADVESGVRSSSSSTTPAAVNKASNMAQVKDGNVK MEDPQMDRKGKKPNSLGNDGLVELSGYNPKRQEFDPEYDNDAEQLLAEMEFKDTDTEE EHEIKLRVLRIYSKRLDERKRRKDFILERNLLYPNPFEKDLTPEERALCRRYDVFMRF LSKEEHEDLLQTIVSEHRTLKRIEELKEARAAGCRTSAEADRYLELKRKREAEESSHR AKDGVHVNPSGQGGPNSFMASESVAKDSNSRPTAQASSSFATDLDIMGFSETQLLSEA LLTPSALMQEFACNLHALLYLSVIWLESFN" CDS join(26936172..26936174,26936459..26936524, 26936670..26936795,26936883..26936958,26937194..26937257, 26937341..26937387,26937532..26937636,26937900..26938110, 26938237..26938447,26938592..26938858,26938973..26939038) /locus_tag="TCM_030408" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29826.m000753; paralog of Thecc1EG011282t2" /codon_start=1 /product="ADA2 2B isoform 3" /protein_id="EOY28944.1" /db_xref="TAIR:AT4G16420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IH29" /translation="MDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEVAEHVGTKT KEKCIEHYDNVYMKSPFFPLPDMSHVVGKNRKELLAMAKGHGEDKKGSSMLGELTVKE ESPFSPSRVKVEGGPSGRLLSGLNADVESGVRSSSSSTTPAAVNKASNMAQVKDGNVK MEDPQMDRKGKKPNSLGNDGLVELSGYNPKRQEFDPEYDNDAEQLLAEMEFKDTDTEE EHEIKLRVLRIYSKRLDERKRRKDFILERNLLYPNPFEKDLTPEERALCRRYDVFMRF LSKEEHEDLLQTIVSEHRTLKRIEELKEARAAGCRTSAEADRYLELKRKREAEESSHR AKDGVHVNPSGQGGPNSFMASESVAKDSNSRPTAQASSSFATDLDIMGFSETQLLSEA EFACNLHALLYLSVIWLESFN" gene 26939872..26943068 /locus_tag="TCM_030409" /note="dbxref CacaoGD:Thecc1EG030409" mRNA join(26939872..26940934,26941166..26941776, 26941987..26942174,26942394..26942457,26942547..26942898) /locus_tag="TCM_030409" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024564001.3" /inference="similar to AA sequence:Phytozome:GSVIVT01024564001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc644t4" mRNA join(26940192..26940934,26941166..26941776, 26941987..26942174,26942394..26942457,26942547..26942646, 26942767..26942792) /locus_tag="TCM_030409" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024564001.3" /inference="similar to AA sequence:Phytozome:GSVIVT01024564001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc644t4; alternateUTRof:Thecc1EG030409t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc644t4" mRNA join(26940192..26940934,26941166..26941776, 26941987..26942174,26942394..26942461,26942547..26942576) /locus_tag="TCM_030409" /product="Telomeric repeat binding-like protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024564001.3" /inference="similar to AA sequence:ricco:29889.m003386" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc637t2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc644t4" CDS join(26940316..26940934,26941166..26941776, 26941987..26942174,26942394..26942457,26942547..26942588) /locus_tag="TCM_030409" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY28945.1" /db_xref="Phytozome:GSVIVT01024564001" /translation="MGEMDDFFHLPAASSLLRKFLSKEEDEMNMSKSDLSTTCLLKKA SIVRSIQEGIANGSVPEEILDSLLLIEQVDRKQGLPVFDSMKAAFCAVALHCTLASLT RSWPCYYDAVQRIWRSRIRILEDSASSELVGPDLDKWRKEVEAALWDSEASQTLLRIN TRGDALRCLRVYVDEARSSMKPAFLRLTLAASPASGRPHCGTDKGKGILRVNPQRRCK RGVPHRHYKGPVEIADSEEERPSYSKFGSLSTSEVNKVQEALKTSTADLLAVVTDPLP KVLEVAEKVASERAGKTLHTEAIQGDGNKNTDVPATSVNPTTASAQAKRVASDTGGEN LSAKAIVEDHSKKGKGVASPSVSPTKDKSDPPPSVNPTTKPAQAKEGNHESQASIHQN EVPRPSLMERNGTARTYQWEDSIDGSSQELSGGSTRCRLPSPKIKPASPLKEYEIKRW VRKRKINRWSLHEEEVLAEAVRKYGSHWSQILRAYPQEFMNRTAGDLKDKWRNLTGK" CDS join(26940316..26940934,26941166..26941776, 26941987..26942174,26942394..26942457,26942547..26942588) /locus_tag="TCM_030409" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY28946.1" /db_xref="Phytozome:GSVIVT01024564001" /translation="MGEMDDFFHLPAASSLLRKFLSKEEDEMNMSKSDLSTTCLLKKA SIVRSIQEGIANGSVPEEILDSLLLIEQVDRKQGLPVFDSMKAAFCAVALHCTLASLT RSWPCYYDAVQRIWRSRIRILEDSASSELVGPDLDKWRKEVEAALWDSEASQTLLRIN TRGDALRCLRVYVDEARSSMKPAFLRLTLAASPASGRPHCGTDKGKGILRVNPQRRCK RGVPHRHYKGPVEIADSEEERPSYSKFGSLSTSEVNKVQEALKTSTADLLAVVTDPLP KVLEVAEKVASERAGKTLHTEAIQGDGNKNTDVPATSVNPTTASAQAKRVASDTGGEN LSAKAIVEDHSKKGKGVASPSVSPTKDKSDPPPSVNPTTKPAQAKEGNHESQASIHQN EVPRPSLMERNGTARTYQWEDSIDGSSQELSGGSTRCRLPSPKIKPASPLKEYEIKRW VRKRKINRWSLHEEEVLAEAVRKYGSHWSQILRAYPQEFMNRTAGDLKDKWRNLTGK" CDS join(26940316..26940934,26941166..26941776, 26941987..26942174,26942394..26942461,26942547..26942551) /locus_tag="TCM_030409" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29889.m003386" /codon_start=1 /product="Telomeric repeat binding-like protein isoform 3" /protein_id="EOY28947.1" /translation="MGEMDDFFHLPAASSLLRKFLSKEEDEMNMSKSDLSTTCLLKKA SIVRSIQEGIANGSVPEEILDSLLLIEQVDRKQGLPVFDSMKAAFCAVALHCTLASLT RSWPCYYDAVQRIWRSRIRILEDSASSELVGPDLDKWRKEVEAALWDSEASQTLLRIN TRGDALRCLRVYVDEARSSMKPAFLRLTLAASPASGRPHCGTDKGKGILRVNPQRRCK RGVPHRHYKGPVEIADSEEERPSYSKFGSLSTSEVNKVQEALKTSTADLLAVVTDPLP KVLEVAEKVASERAGKTLHTEAIQGDGNKNTDVPATSVNPTTASAQAKRVASDTGGEN LSAKAIVEDHSKKGKGVASPSVSPTKDKSDPPPSVNPTTKPAQAKEGNHESQASIHQN EVPRPSLMERNGTARTYQWEDSIDGSSQELSGGSTRCRLPSPKIKPASPLKEYEIKRW VRKRKINRWSLHEEEVLAEAVRKYGSHWSQILRAYPQEFMNRTAVR" mRNA join(26940558..26940934,26941166..26941776, 26941987..26942017,26942401..26942457,26942547..26942727, 26942847..26943068) /locus_tag="TCM_030409" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024564001.3" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc586t5; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc644t4" CDS join(26940568..26940934,26941166..26941776, 26941987..26942017,26942401..26942450) /locus_tag="TCM_030409" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY28948.1" /translation="MKAAFCAVALHCTLASLTRSWPCYYDAVQRIWRSRIRILEDSAS SELVGPDLDKWRKEVEAALWDSEASQTLLRINTRGDALRCLRVYVDEARSSMKPAFLR LTLAASPASGRPHCGTDKGKGILRVNPQRRCKRGVPHRHYKGPVEIADSEEERPSYSK FGSLSTSEVNKVQEALKTSTADLLAVVTDPLPKVLEVAEKVASERAGKTLHTEAIQGD GNKNTDVPATSVNPTTASAQAKRVASDTGGENLSAKAIVEDHSKKGKGVASPSVSPTK DKSDPPPSVNPTTKPAQAKEGNHESQASIHQNEVPRPSLMERNGTARTYQWEDSIDGS SQVTLVSNFKSLSSRVYE" gene complement(26942901..26949188) /locus_tag="TCM_030410" /note="dbxref CacaoGD:Thecc1EG030410" mRNA complement(join(26942901..26943914,26944074..26944293, 26944579..26945394,26945509..26945625,26945714..26945808, 26947373..26947914,26949108..26949188)) /locus_tag="TCM_030410" /product="Agenet domain-containing protein / bromo-adjacent domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s01840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030669t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01840.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1294t5" mRNA complement(join(26943227..26943914,26944074..26944293, 26944579..26945394,26945509..26945625,26945714..26945808, 26947373..26947478,26947851..26947915)) /locus_tag="TCM_030410" /product="Agenet domain-containing protein / bromo-adjacent domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s01840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030669t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01840.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1341t9; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1294t5" CDS complement(join(26943439..26943914,26944074..26944293, 26944579..26945394,26945509..26945625,26945714..26945808, 26947373..26947658)) /locus_tag="TCM_030410" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030669t1" /codon_start=1 /product="Agenet domain-containing protein / bromo-adjacent domain-containing protein, putative isoform 1" /protein_id="EOY28949.1" /db_xref="Phytozome:POPTR_0006s01840.1" /db_xref="TAIR:AT5G55600.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IH28" /translation="MSENNYSFVGWEEHIICQERGNRVVHFYLKEASGPLVLAVVGTE RSIRHMMYVVSGEFLQAYGSHGFINASSKWRARREVVEWLQSLVSMNRPLPDLQMDDS IKGFGSFEVSMTGPLGCRTCLPHHMVGRKLKAQNSDIEWSGIAWICAKQLKHYSSFCR NGTTIAVHCFVFVMAEEENHYLGYLEDMYEDKKGQKKVKVRWFHHNREVKGVIPQLNP HPREVFITPNVQVISAECVDGLATVLTPIHYEKCVAVVPQTSQLAVHMCFRQLKNNKV KPFTLTKLRGYSNQAILSSLDGPVVPKQTGKNRNSHEEDKKALTFDDSLRVTAKRNRS CEGQAGLESGSGGRNSVAVPAYEFMRCEPTYPKLKLRFSRKTMGIVSQPRHPLSFKVD EKIELLSHDSGIRGCWFRCKVLKSSQKHLKVQYDDVQDADGSGNLEEWIPASRVAAPD KLGMRCPGRLTIRPCPPKDTTTAFKIEIGAAVDLWWSDGWWEGVTTRIGICGDDDLQV YLPGEDKFLTVQRENSRISKDWVDNRWVDINGRPDILSYLSSNISPSMKPSTCSAMVE ASRCGSIASMEHKALTTSKLEAVKEDEQELPWPATCDDPEDMNAMSLEKRPHDNDKDG SKESGGAAYVEGKEDSDNEGNGGNKSESFLEEEFESANKRCRTVE" CDS complement(join(26943439..26943914,26944074..26944293, 26944579..26945394,26945509..26945625,26945714..26945808, 26947373..26947391)) /locus_tag="TCM_030410" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030669t1" /codon_start=1 /product="Agenet domain-containing protein / bromo-adjacent domain-containing protein, putative isoform 2" /protein_id="EOY28950.1" /db_xref="Phytozome:POPTR_0006s01840.1" /db_xref="TAIR:AT5G55600.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IH28" /translation="MNRPLPDLQMDDSIKGFGSFEVSMTGPLGCRTCLPHHMVGRKLK AQNSDIEWSGIAWICAKQLKHYSSFCRNGTTIAVHCFVFVMAEEENHYLGYLEDMYED KKGQKKVKVRWFHHNREVKGVIPQLNPHPREVFITPNVQVISAECVDGLATVLTPIHY EKCVAVVPQTSQLAVHMCFRQLKNNKVKPFTLTKLRGYSNQAILSSLDGPVVPKQTGK NRNSHEEDKKALTFDDSLRVTAKRNRSCEGQAGLESGSGGRNSVAVPAYEFMRCEPTY PKLKLRFSRKTMGIVSQPRHPLSFKVDEKIELLSHDSGIRGCWFRCKVLKSSQKHLKV QYDDVQDADGSGNLEEWIPASRVAAPDKLGMRCPGRLTIRPCPPKDTTTAFKIEIGAA VDLWWSDGWWEGVTTRIGICGDDDLQVYLPGEDKFLTVQRENSRISKDWVDNRWVDIN GRPDILSYLSSNISPSMKPSTCSAMVEASRCGSIASMEHKALTTSKLEAVKEDEQELP WPATCDDPEDMNAMSLEKRPHDNDKDGSKESGGAAYVEGKEDSDNEGNGGNKSESFLE EEFESANKRCRTVE" mRNA complement(join(26943706..26943914,26944074..26944273, 26944579..26945394,26945509..26945625,26945714..26945808, 26947373..26947915)) /locus_tag="TCM_030410" /product="Agenet domain-containing protein / bromo-adjacent domain-containing protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s01840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030669t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01840.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1378t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc1294t5" CDS complement(join(26944259..26944273,26944579..26945394, 26945509..26945625,26945714..26945808,26947373..26947658)) /locus_tag="TCM_030410" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG030669t1" /codon_start=1 /product="Agenet domain-containing protein / bromo-adjacent domain-containing protein, putative isoform 3" /protein_id="EOY28951.1" /db_xref="Phytozome:POPTR_0006s01840.1" /db_xref="TAIR:AT5G55600.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IH28" /translation="MSENNYSFVGWEEHIICQERGNRVVHFYLKEASGPLVLAVVGTE RSIRHMMYVVSGEFLQAYGSHGFINASSKWRARREVVEWLQSLVSMNRPLPDLQMDDS IKGFGSFEVSMTGPLGCRTCLPHHMVGRKLKAQNSDIEWSGIAWICAKQLKHYSSFCR NGTTIAVHCFVFVMAEEENHYLGYLEDMYEDKKGQKKVKVRWFHHNREVKGVIPQLNP HPREVFITPNVQVISAECVDGLATVLTPIHYEKCVAVVPQTSQLAVHMCFRQLKNNKV KPFTLTKLRGYSNQAILSSLDGPVVPKQTGKNRNSHEEDKKALTFDDSLRVTAKRNRS CEGQAGLESGSGGRNSVAVPAYEFMRCEPTYPKLKLRFSRKTMGIVSQPRHPLSFKVD EKIELLSHDSGIRGCWFRCKVLKSSQKHLKVQYDDVQDADGSGNLESCST" gene 26949287..26950220 /locus_tag="TCM_030411" /note="dbxref CacaoGD:Thecc1EG030411" mRNA 26949287..26950220 /locus_tag="TCM_030411" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400023514" /inference="similar to AA sequence:Phytozome:GSVIVT01004669001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12136t00001" CDS 26949411..26949995 /locus_tag="TCM_030411" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28952.1" /db_xref="Phytozome:GSVIVT01004669001" /db_xref="TAIR:AT4G16410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T5G1" /translation="MKTSTLRLHIYPAAPRHTNLTTNSPLLFTLFKQPLHLSHSRVTT IISRQILGYPRKTSVIKKPVILLSPEWEETPKRELTQVSSIGYSRFVIVGAVSIGLAL LLMGADDQKALAFGPEGPLMEEFWDNVRRYALYALTVSTGAIYTIFQPILELLKNPIS AILILVIIGGSIYIVSQILSAMVGVTDFSYSYAY" gene complement(26950662..26952908) /locus_tag="TCM_030412" /note="dbxref CacaoGD:Thecc1EG030412" mRNA complement(join(26950662..26951169,26951430..26951537, 26952498..26952761)) /locus_tag="TCM_030412" /product="Tapetum determinant 1, putative isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT1G32583.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014700t1" /inference="similar to AA sequence:Phytozome:GSVIVT01003483001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc3255t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc3255t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc821t20_C1" mRNA complement(join(26950662..26951169,26951424..26951537, 26952173..26952489)) /locus_tag="TCM_030412" /product="Tapetum determinant 1, putative isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT1G32583.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014700t1" /inference="similar to AA sequence:Phytozome:GSVIVT01003483001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc3255t6; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc3255t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc821t20_C1" mRNA complement(join(26950776..26951169,26951430..26951537, 26952173..26952278,26952498..26952908)) /locus_tag="TCM_030412" /product="Tapetum determinant 1, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G32583.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014700t1" /inference="similar to AA sequence:Phytozome:GSVIVT01003483001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc3255t5" CDS complement(join(26950832..26951169,26951430..26951537, 26952173..26952260)) /locus_tag="TCM_030412" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014700t1" /codon_start=1 /product="Tapetum determinant 1, putative isoform 1" /protein_id="EOY28953.1" /db_xref="Phytozome:GSVIVT01003483001" /db_xref="TAIR:AT1G32583.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1G3T1" /translation="MIRALGSVDEKRLSMTFVAMLLALVLLFFVVESIQEEAVGHSSI KRMVFSKKNSSAVARKLLQSSGGGDANRIGTACTKDDIVILQGSTAPLPNGIPSYSVE IVNVCADLGCSISNIHVSCGWFSSVRLINPTVFRRLHYDDCLVNDGEALGPEQCLSFE YSNSFSYPLSVTSVTCC" CDS complement(join(26950832..26951169,26951424..26951537, 26952173..26952260)) /locus_tag="TCM_030412" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014700t1" /codon_start=1 /product="Tapetum determinant 1, putative isoform 2" /protein_id="EOY28954.1" /db_xref="Phytozome:GSVIVT01003483001" /db_xref="TAIR:AT1G32583.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1G3T1" /translation="MIRALGSVDEKRLSMTFVAMLLALVLLFFVVESIQEEAVGHSSI KRMVFSKKNSSAVARKLLQSSGIWGGDANRIGTACTKDDIVILQGSTAPLPNGIPSYS VEIVNVCADLGCSISNIHVSCGWFSSVRLINPTVFRRLHYDDCLVNDGEALGPEQCLS FEYSNSFSYPLSVTSVTCC" CDS complement(join(26950832..26951169,26951430..26951487)) /locus_tag="TCM_030412" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG014700t1" /codon_start=1 /product="Tapetum determinant 1, putative isoform 3" /protein_id="EOY28955.1" /db_xref="Phytozome:GSVIVT01003483001" /db_xref="TAIR:AT1G32583.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1G3T1" /translation="MVFSKKNSSAVARKLLQSSGGGDANRIGTACTKDDIVILQGSTA PLPNGIPSYSVEIVNVCADLGCSISNIHVSCGWFSSVRLINPTVFRRLHYDDCLVNDG EALGPEQCLSFEYSNSFSYPLSVTSVTCC" gene 26955130..26955845 /locus_tag="TCM_030413" /note="dbxref CacaoGD:Thecc1EG030413" mRNA 26955130..26955845 /locus_tag="TCM_030413" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s01870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030662t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01870.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9066t1" CDS 26955192..26955557 /locus_tag="TCM_030413" /note="paralog of Thecc1EG030662t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28956.1" /db_xref="Phytozome:POPTR_0006s01870.1" /translation="MALRWFVHSACHVLGYPKDDHPNHLQHCNNMESYQKEGHSGGVI RSSKVSNGEQVSTQTAEMHLSGFQMPLHYPRYTKADYEKMEEWKVDMLLREYGLSFRG NLDEKRAYAMGAFLWPDQY" gene 26957156..26958276 /locus_tag="TCM_030414" /note="dbxref CacaoGD:Thecc1EG030414" mRNA 26957156..26958276 /locus_tag="TCM_030414" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g01530.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00910.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1226t1" CDS 26957278..26958015 /locus_tag="TCM_030414" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28957.1" /db_xref="Phytozome:POPTR_0016s00910.1" /translation="MDEYKQKMKLQAVGKLYHRDHFLKRTLQLVVSVALLSFFLCHSS GFFVFPHSFSVYFSTFLFSFFTHTLERKYMFLICNGILAFLAKSSVPSSSSPSESDLG AQLSTSSTNLTQTNEVVPRYSDDGDNDVPLVAEREEAEDAYENEVEEQGEQDNIEPLG RVEGKEDDEERESEVSVIVEDGEYKEGESGLVMQEDQHKEEGAGAPLAANEDVPSTED LNQKFEEFIRKMKEEIRIEAQQQLIAV" gene complement(26960378..26964111) /locus_tag="TCM_030416" /note="dbxref CacaoGD:Thecc1EG030416" mRNA complement(join(26960378..26961986,26962074..26962517, 26962602..26963705,26963955..26964111)) /locus_tag="TCM_030416" /product="Far1-related sequence 10 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00900.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020251t2" /inference="similar to AA sequence:Phytozome:POPTR_0016s00900.3" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14606t00001" mRNA complement(join(26960622..26961783,26961896..26961986, 26962074..26962517,26962602..26963705,26963990..26964097)) /locus_tag="TCM_030416" /product="Far1-related sequence 10 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00900.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020251t2" /inference="similar to AA sequence:Phytozome:POPTR_0016s00900.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9101t1; inference alignment:Newbler:10:TSA:cgbaL_g14606t00001" mRNA complement(join(26960622..26961986,26962074..26962517, 26962602..26963705,26963990..26964097)) /locus_tag="TCM_030416" /product="Far1-related sequence 10 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00900.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020251t2" /inference="similar to AA sequence:Phytozome:POPTR_0016s00900.3" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9101t3; alternateUTRof:Thecc1EG030416t1; inference alignment:Newbler:10:TSA:cgbaL_g14606t00001" CDS complement(join(26961375..26961986,26962074..26962517, 26962602..26963621)) /locus_tag="TCM_030416" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG020251t2" /codon_start=1 /product="Far1-related sequence 10 isoform 1" /protein_id="EOY28958.1" /db_xref="Phytozome:POPTR_0016s00900.3" /db_xref="TAIR:AT5G28530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW49" /translation="MTSVPSKNIWIRRQQCPCGDWKCYVTYEGDAEETSISSQLVKNE SVQSEAMVAPYVGMVFKSDEDAFEYYGNFARKNGFSIRKERSRLSPQLGIYKRDFVCY RSGFAPLRKKPTGEHHRDRKSVRCGCDAKMYLSKEVIDGVSQWFVVQFSNVHNHELLE DDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKVLELEKGIQGGQLPFLERDVRN FVQNRKKVVQENDALLNEKRENDTMELLEACKATKEADQDFVYDYTVDENDKVENIAW SYGDSVNSYTMYGDVVYFDTTYRSITYDMLFGAWIGIDNNGRPIFFGCVLLQDETMRS FAWALQTFISFMKGRCPQTISTDLDPGLRDAIRSELPSTKHVMSIWNILPKVSSWFPL QLGSQYAEFKSEFDALYRLESTEDFELRWNQMVSIFGLGSDKHITLLYSLRTSWAQSY VRGYFLARMVTTTYSKSVDAFLKGIFSAQTSLRRFFEQVGVAANIQNQPHQEMQHMHL KTCLPIEQHSRQILTPFAFNALQHELIASMQYAASEMANGSYLVRHFRKIDGESLVIW IPEDEQIHCSCKEFESSGILCRHALRVFIDKNYFQLPDKYFLSRWRRESSLMFYDDHS VHDNDDEWFQEFQSLTETLFTESSITKERSDYMRRELTKELTRLLNEVRDMPESDGAP MDFTLSPAS" CDS complement(join(26961375..26961986,26962074..26962517, 26962602..26963621)) /locus_tag="TCM_030416" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG020251t2" /codon_start=1 /product="Far1-related sequence 10 isoform 1" /protein_id="EOY28960.1" /db_xref="Phytozome:POPTR_0016s00900.3" /db_xref="TAIR:AT5G28530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW49" /translation="MTSVPSKNIWIRRQQCPCGDWKCYVTYEGDAEETSISSQLVKNE SVQSEAMVAPYVGMVFKSDEDAFEYYGNFARKNGFSIRKERSRLSPQLGIYKRDFVCY RSGFAPLRKKPTGEHHRDRKSVRCGCDAKMYLSKEVIDGVSQWFVVQFSNVHNHELLE DDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKVLELEKGIQGGQLPFLERDVRN FVQNRKKVVQENDALLNEKRENDTMELLEACKATKEADQDFVYDYTVDENDKVENIAW SYGDSVNSYTMYGDVVYFDTTYRSITYDMLFGAWIGIDNNGRPIFFGCVLLQDETMRS FAWALQTFISFMKGRCPQTISTDLDPGLRDAIRSELPSTKHVMSIWNILPKVSSWFPL QLGSQYAEFKSEFDALYRLESTEDFELRWNQMVSIFGLGSDKHITLLYSLRTSWAQSY VRGYFLARMVTTTYSKSVDAFLKGIFSAQTSLRRFFEQVGVAANIQNQPHQEMQHMHL KTCLPIEQHSRQILTPFAFNALQHELIASMQYAASEMANGSYLVRHFRKIDGESLVIW IPEDEQIHCSCKEFESSGILCRHALRVFIDKNYFQLPDKYFLSRWRRESSLMFYDDHS VHDNDDEWFQEFQSLTETLFTESSITKERSDYMRRELTKELTRLLNEVRDMPESDGAP MDFTLSPAS" CDS complement(join(26961665..26961783,26961896..26961986, 26962074..26962517,26962602..26963621)) /locus_tag="TCM_030416" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG020251t2" /codon_start=1 /product="Far1-related sequence 10 isoform 2" /protein_id="EOY28959.1" /db_xref="Phytozome:POPTR_0016s00900.1" /db_xref="TAIR:AT5G28530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW49" /translation="MTSVPSKNIWIRRQQCPCGDWKCYVTYEGDAEETSISSQLVKNE SVQSEAMVAPYVGMVFKSDEDAFEYYGNFARKNGFSIRKERSRLSPQLGIYKRDFVCY RSGFAPLRKKPTGEHHRDRKSVRCGCDAKMYLSKEVIDGVSQWFVVQFSNVHNHELLE DDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKVLELEKGIQGGQLPFLERDVRN FVQNRKKVVQENDALLNEKRENDTMELLEACKATKEADQDFVYDYTVDENDKVENIAW SYGDSVNSYTMYGDVVYFDTTYRSITYDMLFGAWIGIDNNGRPIFFGCVLLQDETMRS FAWALQTFISFMKGRCPQTISTDLDPGLRDAIRSELPSTKHVMSIWNILPKVSSWFPL QLGSQYAEFKSEFDALYRLESTEDFELRWNQMVSIFGLGSDKHITLLYSLRTSWAQSY VRGYFLARMVTTTYSKSVDAFLKGIFSAQTSLRRFFEQVGVAANIQNQPHQEMQHMHL KTCLPIEQHSRRLMGKVLLYGFQKMNRFTVPVRSLSLQEYYADMLFAYL" mRNA complement(join(26961757..26961783,26962074..26962517, 26962602..26963705,26963990..26964078)) /locus_tag="TCM_030416" /product="Far1-related sequence 10 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00900.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020251t2" /inference="similar to AA sequence:Phytozome:GSVIVT01003485001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1194t1; inference alignment:Newbler:10:TSA:cgbaL_g14606t00001" CDS complement(join(26961775..26961783,26962074..26962517, 26962602..26963621)) /locus_tag="TCM_030416" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG020251t2" /codon_start=1 /product="Far1-related sequence 10 isoform 4" /protein_id="EOY28961.1" /db_xref="Phytozome:GSVIVT01003485001" /db_xref="TAIR:AT5G28530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW49" /translation="MTSVPSKNIWIRRQQCPCGDWKCYVTYEGDAEETSISSQLVKNE SVQSEAMVAPYVGMVFKSDEDAFEYYGNFARKNGFSIRKERSRLSPQLGIYKRDFVCY RSGFAPLRKKPTGEHHRDRKSVRCGCDAKMYLSKEVIDGVSQWFVVQFSNVHNHELLE DDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKVLELEKGIQGGQLPFLERDVRN FVQNRKKVVQENDALLNEKRENDTMELLEACKATKEADQDFVYDYTVDENDKVENIAW SYGDSVNSYTMYGDVVYFDTTYRSITYDMLFGAWIGIDNNGRPIFFGCVLLQDETMRS FAWALQTFISFMKGRCPQTISTDLDPGLRDAIRSELPSTKHVMSIWNILPKVSSWFPL QLGSQYAEFKSEFDALYRLESTEDFELRWNQMVSIFGLGSDKHITLLYSLRTSWAQSY VRGYFLARMVTTTYSKSVDAFLKGIFSAQTSLRRFFEQED" mRNA complement(join(26961895..26962517,26962602..26963978)) /locus_tag="TCM_030416" /product="Far1-related sequence 10 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00900.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020251t2" /inference="similar to AA sequence:Phytozome:GSVIVT01003485001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc993t4; alternateUTRof:Thecc1EG030416t5; inference alignment:Newbler:10:TSA:cgbaL_g14606t00001" mRNA complement(join(26961960..26962517,26962602..26963705, 26963990..26964078)) /locus_tag="TCM_030416" /product="Far1-related sequence 10 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00900.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020251t2" /inference="similar to AA sequence:Phytozome:GSVIVT01003485001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc1194t3; inference alignment:Newbler:10:TSA:cgbaL_g14606t00001" CDS complement(join(26962065..26962517,26962602..26963621)) /locus_tag="TCM_030416" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG020251t2" /codon_start=1 /product="Far1-related sequence 10 isoform 5" /protein_id="EOY28962.1" /db_xref="Phytozome:GSVIVT01003485001" /db_xref="TAIR:AT5G28530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW49" /translation="MTSVPSKNIWIRRQQCPCGDWKCYVTYEGDAEETSISSQLVKNE SVQSEAMVAPYVGMVFKSDEDAFEYYGNFARKNGFSIRKERSRLSPQLGIYKRDFVCY RSGFAPLRKKPTGEHHRDRKSVRCGCDAKMYLSKEVIDGVSQWFVVQFSNVHNHELLE DDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKVLELEKGIQGGQLPFLERDVRN FVQNRKKVVQENDALLNEKRENDTMELLEACKATKEADQDFVYDYTVDENDKVENIAW SYGDSVNSYTMYGDVVYFDTTYRSITYDMLFGAWIGIDNNGRPIFFGCVLLQDETMRS FAWALQTFISFMKGRCPQTISTDLDPGLRDAIRSELPSTKHVMSIWNILPKVSSWFPL QLGSQYAEFKSEFDALYRLESTEDFELRWNQMVSIFGLGSDKHITLLYSLRTSWAQSY VRGYFLARMVTTTYSKSVDAFLKGIFSAQTSLRRFFEQVY" CDS complement(join(26962065..26962517,26962602..26963621)) /locus_tag="TCM_030416" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG020251t2" /codon_start=1 /product="Far1-related sequence 10 isoform 5" /protein_id="EOY28963.1" /db_xref="Phytozome:GSVIVT01003485001" /db_xref="TAIR:AT5G28530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW49" /translation="MTSVPSKNIWIRRQQCPCGDWKCYVTYEGDAEETSISSQLVKNE SVQSEAMVAPYVGMVFKSDEDAFEYYGNFARKNGFSIRKERSRLSPQLGIYKRDFVCY RSGFAPLRKKPTGEHHRDRKSVRCGCDAKMYLSKEVIDGVSQWFVVQFSNVHNHELLE DDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKVLELEKGIQGGQLPFLERDVRN FVQNRKKVVQENDALLNEKRENDTMELLEACKATKEADQDFVYDYTVDENDKVENIAW SYGDSVNSYTMYGDVVYFDTTYRSITYDMLFGAWIGIDNNGRPIFFGCVLLQDETMRS FAWALQTFISFMKGRCPQTISTDLDPGLRDAIRSELPSTKHVMSIWNILPKVSSWFPL QLGSQYAEFKSEFDALYRLESTEDFELRWNQMVSIFGLGSDKHITLLYSLRTSWAQSY VRGYFLARMVTTTYSKSVDAFLKGIFSAQTSLRRFFEQVY" gene 26964392..26966208 /locus_tag="TCM_030417" /note="dbxref CacaoGD:Thecc1EG030417" mRNA join(26964392..26964527,26964765..26965745, 26965870..26966208) /locus_tag="TCM_030417" /product="Calcium-activated outward-rectifying potassium channel, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003486001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030657t3" /inference="similar to AA sequence:Phytozome:GSVIVT01003486001" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9078t1" CDS join(26964853..26965745,26965870..26966005) /locus_tag="TCM_030417" /note="paralog of Thecc1EG030657t3" /codon_start=1 /product="Calcium-activated outward-rectifying potassium channel, putative" /protein_id="EOY28964.1" /db_xref="Phytozome:GSVIVT01003486001" /db_xref="TAIR:AT5G55630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SA74" /translation="MAREDASQPLLSAMTDSSLNETKAIQRRKPQRRSMAPSEKGSQE QQRIPSAINPESALVAQEVRFKYVLLWLASYLGIGTLWFSLIRNQIDGKKTNGVLDAI YFCVVTMTTVGYGDLVPHSTLAKILACIYVFTGMALVGLIISKAADYIVEKQEILLVR AMHMNEKFNAAEILMEVETDKVKYKFLVTSQLLLVLIVVGISFLSLVEKMEFIDAIYC VCSTITTLGYGDESFSTGVGRIFAIFWILSSTVCLAQFFLYLAELYTERRQKALVKWV LTRKLTSSDLEAADLDHDGVVSTAEFILYKLKEMGKICQEDVLPLMERFKTLDVDHTG TLTASDLI" gene complement(26970536..26972922) /locus_tag="TCM_030419" /note="dbxref CacaoGD:Thecc1EG030419" mRNA complement(join(26970536..26971058,26971280..26971357, 26972214..26972323,26972660..26972922)) /locus_tag="TCM_030419" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g12480.1" /inference="similar to AA sequence:Phytozome:Glyma15g12480.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g16503t00001" CDS complement(join(26970760..26971058,26971280..26971357, 26972214..26972323,26972660..26972727)) /locus_tag="TCM_030419" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28965.1" /db_xref="Phytozome:Glyma15g12480.1" /db_xref="TAIR:AT4G16400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD48" /translation="MNCDQAKLFRGVSFSFFSSVSDRSGLKGYGSFAFKKEAHFTFDM ICSGPPPLRLCGPFCVVTVKPQLFFGFKVLNLCRWEEQGEEAKKAMDIQQKLVQYRYH FTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGGGSQLATEVHGE KAGQGLMDYVAARPEHAEEAQKFE" gene 26973948..26978459 /locus_tag="TCM_030420" /note="dbxref CacaoGD:Thecc1EG030420" mRNA join(26973948..26974028,26974135..26974732, 26975273..26975358,26975583..26975648,26975736..26975909, 26976000..26976170,26976261..26976416,26976519..26976665, 26976929..26977000,26977105..26977707,26977814..26977962, 26978169..26978382) /locus_tag="TCM_030420" /product="Microtubule-associated proteins 70-5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011057t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00870.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2849t1" CDS join(26974633..26974732,26975273..26975358, 26975583..26975648,26975736..26975909,26976000..26976170, 26976261..26976416,26976519..26976665,26976929..26977000, 26977105..26977707,26977814..26977962,26978169..26978187) /locus_tag="TCM_030420" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011057t1" /codon_start=1 /product="Microtubule-associated proteins 70-5 isoform 1" /protein_id="EOY28966.1" /db_xref="Phytozome:POPTR_0016s00870.1" /db_xref="TAIR:AT4G17220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B4A8" /translation="MVGHDELLGGEELSLAHPDPVVLELTRLQNQLKEKDRELGAAQA EIKALRATETLKDKAIEELQGEVHKLDEKHRVTENLLQHKNLEIKKLTNEKKEALAAQ FAAEATLRRVHANQKDDDDDVPIESVIAPFEAEIKMYKNEVALLQEDKRALERLTKSK ESALLEAERILRSALERALIVEEVQNQNFELRRQIEICQEENKILEKTNRQKVLEVEK LSQTIQELEEAILAGGAAANSIRDYQRRISELHEEKRTLDRELARVKVSANRVATVVA NEWKDENDKVMPVKQWLEDRRLLQAEMQRLKDKLAVSERTAKAEAQLKEKFKLRLKIL EDGLKHVSSFSGNPNASCGSPKPEKSSNILGFLTSSGGLRKRSTSQPRGSTISRTSIL QRPSVETETANANNGLRQVSNLKKKGASGENMLRKNLWTSRCKVADSSEKENTAMKVN TDINISKDGDTTGSAGIKNKECCNEETENRGNADCNVEDTVSGFLYDRLQKEVINLRK CCEAKDSSLNSKDEEIKMLMKKVEAFSKAMEVESKRLKREAVAKEKENGSAKMDDSKK LRNINSSRRLSKTS" mRNA join(<26976000..26976170,26976261..26976416, 26976519..26976665,26976926..26977000,26977105..26977707, 26977814..26977962,26978169..26978459) /locus_tag="TCM_030420" /product="Microtubule-associated proteins 70-5 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024143t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00870.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9083t1; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2849t1" CDS join(<26976000..26976170,26976261..26976416, 26976519..26976665,26976926..26977000,26977105..26977707, 26977814..26977962,26978169..26978187) /locus_tag="TCM_030420" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG024143t1" /codon_start=1 /product="Microtubule-associated proteins 70-5 isoform 2" /protein_id="EOY28967.1" /db_xref="Phytozome:POPTR_0016s00870.1" /db_xref="TAIR:AT4G17220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IH23" /translation="VALLQEDKRALERLTKSKESALLEAERILRSALERALIVEEVQN QNFELRRQIEICQEENKILEKTNRQKVLEVEKLSQTIQELEEAILAGGAAANSIRDYQ RRISELHEEKRTLDRELARVKVSANRVATVVANEWKDENDKVMPVKQWLEDRRLLQQA EMQRLKDKLAVSERTAKAEAQLKEKFKLRLKILEDGLKHVSSFSGNPNASCGSPKPEK SSNILGFLTSSGGLRKRSTSQPRGSTISRTSILQRPSVETETANANNGLRQVSNLKKK GASGENMLRKNLWTSRCKVADSSEKENTAMKVNTDINISKDGDTTGSAGIKNKECCNE ETENRGNADCNVEDTVSGFLYDRLQKEVINLRKCCEAKDSSLNSKDEEIKMLMKKVEA FSKAMEVESKRLKREAVAKEKENGSAKMDDSKKLRNINSSRRLSKTS" gene complement(26978452..26979589) /locus_tag="TCM_030421" /note="dbxref CacaoGD:Thecc1EG030421" mRNA complement(26978452..26979589) /locus_tag="TCM_030421" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s01910.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01910.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9085t1" CDS complement(26979042..26979446) /locus_tag="TCM_030421" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28968.1" /db_xref="Phytozome:POPTR_0006s01910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD50" /translation="MGNCVNLSLSRAEKSEILIFSEGEKEFRASKLVKKVTCGPYHGY ELVHSLPRSPLPPKTRLEPGKAGCLPPHLVQPHDHSISLKIIKKESFQGRNIKIVITR QQLEFLLGDAKMFQSKKIAVRSPGNFKRGDRK" gene complement(26979636..26982879) /locus_tag="TCM_030422" /note="dbxref CacaoGD:Thecc1EG030422" mRNA complement(26979636..26982879) /locus_tag="TCM_030422" /product="Pentatricopeptide (PPR) repeat-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma1180s00200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015751t1" /inference="similar to AA sequence:frave:gene19821" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9342t1" CDS complement(26980321..26982423) /locus_tag="TCM_030422" /note="dbxref frave:gene19821; paralog of Thecc1EG015751t1" /codon_start=1 /product="Pentatricopeptide (PPR) repeat-containing protein" /protein_id="EOY28969.1" /db_xref="TAIR:AT4G16390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD54" /translation="MAYHHLCSSPSSVFHDRHTLSASPKPRPARSTAPSLRLVSCSFQ SKSSIQISHVSLQDPITQTKNTPKHSNSQSPDGKTGSSSKSYVWVNPRSPRASRLRQL SYDSRYSSLVKVAETLDSCNPNEHDVLSVLSRLGNDVLEQDAVVVLNNMSNPHTALLA LNHFQRILKKTSREVILYNVTMKVFRKSKDLDGAEKLFDEMLQKGVKPDNVTFSTLIS CARVCALPDKAVEWFEKMPIYGCDPDDVTYSAMIDAYGRAGNVDMAFNLYDRARTEKW RIDPVTFSTLIKIYGISGNYDGCLNVYEEMKALGAKPNVVIYNTLLDAMGRAKRPWQA KTIYKEMTNNGFSPNWATYAALLRAYGRARYGEDALNIYKEMKDKGLELTVILYNTLL AMCADVGYADEAVEIFEDMKNSGTCKPDSWTYSSLITIYSCSGKVSEAEGIVDEMLEA GFEPNIFVLTSLIQCYGKAQHTDDVVRTFNRVLELGITPDDRFCGCLLNVMTQTPREE LAKLTDCIKKANPKLGHVVKLLVEEQDGQGNFKNEASELFNCIGSDVKKAYCNCLIDL CVNLDLLERACELLELGLSLEIYADVQSRSPTQWSLNLKSLSLGAALTSLHVWINDLT KVLESGEELPPLLGINTGHGKHKYSDKGLATVFESHLKELDAPFHEAPDKVGWFLTTQ VAAKSWLESRSSPDLVAA" mobile_element 26984607..26985284 /note="source:INTACT597_F267_scaffold_2-int 5756 6344" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26984909..26992319) /locus_tag="TCM_030423" /note="dbxref CacaoGD:Thecc1EG030423" mRNA complement(join(26984909..26985006,26985890..26985964, 26987587..26987664,26988516..26988620,26988789..26988870, 26990309..26990354,26990428..26990433,26991253..26991341, 26992160..26992319)) /locus_tag="TCM_030423" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030424t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17213t3" mobile_element 26985598..26987306 /note="source:INTACT597_F267_scaffold_2-int 6948 8691" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(26987633..26987664,26988516..26988620, 26988789..26988870,26990309..26990354,26990428..26990433, 26991253..26991341,26992160..26992285)) /locus_tag="TCM_030423" /note="paralog of Thecc1EG030424t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28970.1" /translation="MAMVGSLATMVDHFHAHVTRLMVDLFMIAGASVAATTSTVIREP FQTRLFPSRDRTDGKTIERRIDGGRKGGFGFGDFQVQAETMEEKKVTTMELKVDLQCR RCYNKVKKVLSKLPQIRDQRFDKKANTVTITVVSCCLEQLRDKLYYKGGGQFMIAGAV M" gene complement(26990429..27015093) /locus_tag="TCM_030424" /note="dbxref CacaoGD:Thecc1EG030424" mRNA complement(join(26990429..26990791,27014169..27014350, 27014513..27014594,27014946..27014990,27015064..27015093)) /locus_tag="TCM_030424" /product="Heavy metal transport/detoxification superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g01600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030423t1" /inference="similar to AA sequence:Phytozome:Glyma09g01600.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1005t8; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1005t8" mRNA complement(join(26990432..26990817,27014162..27014350, 27014513..27014594,27014670..27014697)) /locus_tag="TCM_030424" /product="Heavy metal transport/detoxification superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g01600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030423t1" /inference="similar to AA sequence:Phytozome:Glyma09g01600.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc249t8; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1005t8" CDS complement(join(26990723..26990791,27014169..27014350, 27014513..27014594,27014946..27014960)) /locus_tag="TCM_030424" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030423t1" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein, putative isoform 1" /protein_id="EOY28971.1" /db_xref="Phytozome:Glyma09g01600.1" /db_xref="TAIR:AT4G16380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H4A8" /translation="MEEKKVTTMELKVDLQCRRCYNKVKKLLSKFPQIRDQRFDEKAN TVTITVVCCCPEKFRDKLCRKGGGSIKGIKIIKPSPPPPRPSPPSPPKPAKKAGAQGE KRMVVSNAIVRKD" CDS complement(join(26990723..26990817,27014162..27014350, 27014513..27014594,27014670..27014672)) /locus_tag="TCM_030424" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030423t1" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein, putative isoform 2" /protein_id="EOY28972.1" /db_xref="Phytozome:Glyma09g01600.1" /db_xref="TAIR:AT4G16380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H4A8" /translation="MVTTMELKVDLQCRRCYNKVKKLLSKFPQIRDQRFDEKANTVTI TVVCCCPEKFRDKLCRKGGGSIKGIKIIKPSPPPPRPSPPSPPKPRPRGWRSCLFKAK KAGAQGEKRMVVSNAIVRKD" gene complement(26991822..27019273) /locus_tag="TCM_030425" /note="dbxref CacaoGD:Thecc1EG030425" mRNA complement(join(26991822..26992142,27017704..27018353, 27018527..27018608,27018972..27019273)) /locus_tag="TCM_030425" /product="Heavy metal transport/detoxification superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g01030.2" /inference="similar to AA sequence:frave:gene19822" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00147t00001; inference alignment:Newbler:10:TSA:cgbaB_g00147t00001" CDS complement(join(26992107..26992142,27017704..27018353, 27018527..27018608,27018972..27018986)) /locus_tag="TCM_030425" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene19822" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein, putative isoform 1" /protein_id="EOY28973.1" /db_xref="TAIR:AT4G16380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H4A8" /translation="MAEKKVTTMVLKVDLQCYRCYKKVKKVLSKIPQIQDQVYNEKAN TVTITVVCCSPEKIRDKICCKGGGSIKSIEIKPPPPPPPKPKEPEKKPEKPKEAEKKP EKPKEPEKKPEKPKEPEKKLKEPDKKPEKPKEAEKPKVPEKKPEKPKEAEKPPAPAPA PAPAPAPAPAPAPAPAPKPIEPAPPPPMAYPPLGYCCTDCYHGRGGGPCYYGGPPPRP CYETYGRPVYDSWGCSGGDYKYCYTSRGECLSEENPQACSIM" mobile_element 26993728..26994605 /note="source:INTACT642F_F365_scaffold_5-int 1 869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26996950..26996983) /note="source:CACAO_M_E14227_F12_scaffold_3 7095 7130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26996984..26998836 /note="source:CACAO_M_E59438_F15_scaffold_9 1 1849" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26998937..27000055) /note="source:CACAO_M_E85526_F15_scaffold_11 1 1134" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(27002710..27004103) /locus_tag="TCM_030426" /note="dbxref CacaoGD:Thecc1EG030426" mRNA complement(join(27002710..27003430,27003501..27003806, 27003918..27004103)) /locus_tag="TCM_030426" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030429t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01437t00002" CDS complement(join(27002979..27003430,27003501..27003537)) /locus_tag="TCM_030426" /note="paralog of Thecc1EG030429t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28975.1" /translation="MWHREGPCEKSKVGAKAAQVMGGSAGIVAIVAASLVKGVAALPV ADATACLGLVVGTATGTVKVAAALLATADLAVGATTGRVKGAAAHPVAGATAGLVKGA AALLAAAATAGLVVDTVAGLVKGAAALLAAAATAGRASGAVTFPALVTVDVLAVGAQA VL" gene complement(27005833..27007637) /locus_tag="TCM_030427" /note="dbxref CacaoGD:Thecc1EG030427" mRNA complement(join(27005833..27006958,27007063..27007637)) /locus_tag="TCM_030427" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.62 coverage" CDS complement(27006259..27006555) /locus_tag="TCM_030427" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28976.1" /translation="MVIGLRNHFRHVSSRKADHIQSFGTTVFNIPLRDTTDGKTIERR HGWGQERGAEDLCSRGTMCYARWPTNKREKSKFLLFLFLFFHSKDIDVINHRVV" mobile_element 27007517..27010699 /note="source:CACAO_M_E49296_F19_scaffold_6 1 3183" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(27010647..27012658) /locus_tag="TCM_030428" /note="dbxref CacaoGD:Thecc1EG030428" mRNA complement(join(27010647..27011001,27011106..27011169, 27011296..27011377,27011492..27011671,27011930..27012658)) /locus_tag="TCM_030428" /product="Pentatricopeptide (PPR) repeat-containing-like protein" /inference="alignment:exonerate-protein:2:frave:gene19825" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030422t1" /inference="similar to AA sequence:Phytozome:GSVIVT01003493001" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc29t9" CDS complement(join(27010734..27011001,27011106..27011169, 27011296..27011377,27011492..27011671,27011930..27012592)) /locus_tag="TCM_030428" /note="paralog of Thecc1EG030422t1" /codon_start=1 /product="Pentatricopeptide (PPR) repeat-containing-like protein" /protein_id="EOY28977.1" /db_xref="Phytozome:GSVIVT01003493001" /db_xref="TAIR:AT4G16390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWE0" /translation="MAYHHLCSSPSYVFRDRHTLSASPKTRPARSTAPSLKQVSCLFQ SKSSIQISHVSLQDPITQTKNTPKHSNSQSPDGKTGSSTKSYVWVNPRSPRASRLRQL SYDSRYSSLVKVADSLDSCKPNEHDVLSVLSRLGNDVLEQDAVVVLNNMSNPHTTLLA LNHFQRILKKTSREIILYNVTMKVFRKSKDLDGAEKLFDEMLQKGVKPDNVTFSTLIS CARALAAKPNLAIYNTLLDAMGRAKRPWQAKTIYKEMTNNGFSPNWATYATLLRAYGN MEKFFLTTMVLKVDLQCCRCYKKVKKVLYKFPREKWSELIFDDGFSEQEIYETSIEIK PPPPPPKPKEPEKKPEKPKEPEKKPEKPKEPEKKSKKPKNLRSPRNLRRNLKNQKKLR RLKSPKRSLKSLRKLKNQPQPQHQSL" mRNA complement(join(27017367..27018353,27018527..27019045)) /locus_tag="TCM_030425" /product="Heavy metal transport/detoxification superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g01030.2" /inference="similar to AA sequence:frave:gene19822" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00232t00006; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9396t2; inference alignment:Newbler:10:TSA:cgbaB_g00147t00001" CDS complement(join(27017668..27018353,27018527..27018599)) /locus_tag="TCM_030425" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene19822" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein, putative isoform 2" /protein_id="EOY28974.1" /db_xref="TAIR:AT4G16380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H4A8" /translation="MVLKVDLQCYRCYKKVKKVLSKIPQIQDQVYNEKANTVTITVVC CSPEKIRDKICCKGGGSIKSIEIKPPPPPPPKPKEPEKKPEKPKEAEKKPEKPKEPEK KPEKPKEPEKKLKEPDKKPEKPKEAEKPKVPEKKPEKPKEAEKPPAPAPAPAPAPAPA PAPAPAPAPKPIEPAPPPPMAYPPLGYCCTDCYHGRGGGPCYYGGPPPRPCYETYGRP VYDSWGCSGGDYKYCYTSRGECLSEENPQACSIM" gene complement(27020532..27021943) /locus_tag="TCM_030429" /note="dbxref CacaoGD:Thecc1EG030429" mRNA complement(join(27020532..27021409,27021498..27021655, 27021755..27021943)) /locus_tag="TCM_030429" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003495001.2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400014815" /note="quality class is strong, express is strong, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9412t1" CDS complement(join(27020804..27021409,27021498..27021655, 27021755..27021827)) /locus_tag="TCM_030429" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28978.1" /db_xref="Phytozome:PGSC0003DMP400014815" /translation="MVLKVDLQCYRCYKKVKKVLCKFPEIRDQKYDDKANTVTISVVS RNPESIRSKICDKAGCCIKSIEIKPKDKPGTDKGYFVRNAICGIEKGRARRVRVFHSD SHAMRIVGKEFGVVGVAVVGAKAAQVMGGSAGIVAIVAASLVKGVAALPVADATACLG LVVGTATGTVKVAAALLATADLAVGATTGRVKGAAAHPVAGATAGLVVDTVAGLVKGA AALLAAAATAGLVVDTVAGLVKGAAALLAAAATAGHASGAVTFPAVVVVDVLAVGAQA VL" gene 27025298..27028725 /locus_tag="TCM_030430" /note="dbxref CacaoGD:Thecc1EG030430" mRNA join(27025298..27025467,27025806..27025983, 27026240..27026412,27027352..27027442,27027844..27028453) /locus_tag="TCM_030430" /product="Heavy metal transport/detoxification superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s00790.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00840.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02296t00002; inference alignment:Newbler:10:TSA:cgbaP1_g03707t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc679t7" mRNA join(27025298..27025467,27025806..27025983, 27026219..27026412,27027352..27027442,27027844..27028433) /locus_tag="TCM_030430" /product="Heavy metal transport/detoxification superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s00790.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00840.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03707t00001; inference alignment:Newbler:10:TSA:cgbaP1_g03707t00001" CDS join(27025459..27025467,27025806..27025983, 27026219..27026412,27027352..27027442,27027844..27028175) /locus_tag="TCM_030430" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein isoform 1" /protein_id="EOY28979.1" /db_xref="Phytozome:POPTR_0016s00840.1" /db_xref="TAIR:AT5G50740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SSK0" /translation="MGEENREENKGKEKKEEAKDEKKEDEKKEEKKEEEPPEIVLKVD MHCEACARKVARALKGFEGVEEVSTDSKASKVVVKGKTADPIKVCERLQKKSGRKVEL ISPLPKPPEEKKEENKEPKEEKKEEPPAAITVVMKVRMHCEACAQVLQKRIRKIQGVE SVETDVGNDQVIVKGVVDPTKLVDDVYKKTKKQASIVKDEEKKEEEKKEEKKEEKEGE KKEGEEGKGEEDTKSDIKRSEYYPSKFYSEYAYHPEIFSDENPNACSVM" CDS join(27025459..27025467,27025806..27025983, 27026240..27026412,27027352..27027442,27027844..27028175) /locus_tag="TCM_030430" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein isoform 2" /protein_id="EOY28980.1" /db_xref="Phytozome:POPTR_0016s00840.1" /db_xref="TAIR:AT5G50740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SSK0" /translation="MGEENREENKGKEKKEEAKDEKKEDEKKEEKKEEEPPEIVLKVD MHCEACARKVARALKGFEDSKASKVVVKGKTADPIKVCERLQKKSGRKVELISPLPKP PEEKKEENKEPKEEKKEEPPAAITVVMKVRMHCEACAQVLQKRIRKIQGVESVETDVG NDQVIVKGVVDPTKLVDDVYKKTKKQASIVKDEEKKEEEKKEEKKEEKEGEKKEGEEG KGEEDTKSDIKRSEYYPSKFYSEYAYHPEIFSDENPNACSVM" mRNA join(27025529..27025649,27025806..27025983, 27026219..27026412,27027352..27027442,27027844..27028725) /locus_tag="TCM_030430" /product="Heavy metal transport/detoxification superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s00790.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00840.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:PASA:2:TSA:puevd3b029435t1a3; inference alignment:Newbler:10:TSA:cgbaP1_g03707t00001" CDS join(27025584..27025649,27025806..27025983, 27026219..27026412,27027352..27027442,27027844..27028175) /locus_tag="TCM_030430" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein isoform 3" /protein_id="EOY28981.1" /db_xref="Phytozome:POPTR_0016s00840.1" /db_xref="TAIR:AT5G50740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SSK0" /translation="MTANFWSDLVESPLLLTLQFCEENREENKGKEKKEEAKDEKKED EKKEEKKEEEPPEIVLKVDMHCEACARKVARALKGFEGVEEVSTDSKASKVVVKGKTA DPIKVCERLQKKSGRKVELISPLPKPPEEKKEENKEPKEEKKEEPPAAITVVMKVRMH CEACAQVLQKRIRKIQGVESVETDVGNDQVIVKGVVDPTKLVDDVYKKTKKQASIVKD EEKKEEEKKEEKKEEKEGEKKEGEEGKGEEDTKSDIKRSEYYPSKFYSEYAYHPEIFS DENPNACSVM" gene complement(27028823..27030319) /locus_tag="TCM_030431" /note="dbxref CacaoGD:Thecc1EG030431" mRNA complement(join(27028823..27029720,27029908..27030319)) /locus_tag="TCM_030431" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.28 coverage" CDS complement(join(27029613..27029720,27029908..27030075)) /locus_tag="TCM_030431" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28982.1" /translation="MRQVRKLNSLSINCVKLLVMILYAHGSTTGKTDPQGKTSWFIFS SFYEGKRALDLEYMVPPHHMLKETIVTLTVTSRLCSTFRVLGLRPEP" gene 27030528..27031845 /locus_tag="TCM_030432" /note="dbxref CacaoGD:Thecc1EG030432" mRNA join(27030528..27030887,27031533..27031845) /locus_tag="TCM_030432" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.19 coverage" CDS 27031626..27031844 /locus_tag="TCM_030432" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28983.1" /translation="MVQKMHKINCQLYMSQGKNISYIYIYICMYLCMYLVLVSLVGGT CNAEWRNKDLLEGRVNSSGELSNIKSKV" gene 27033714..27038335 /locus_tag="TCM_030433" /note="dbxref CacaoGD:Thecc1EG030433" mRNA join(27033714..27034417,27034999..27035096, 27035946..27036515,27036751..27037006,27037102..27037284, 27037378..27038335) /locus_tag="TCM_030433" /product="Oligopeptide transporter isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005133001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007319t1" /inference="similar to AA sequence:Phytozome:GSVIVT01005133001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc107t14" mRNA join(27033724..27034417,27034999..27035096, 27035946..27036515,27036751..27037006,27037102..27037284, 27037378..27037599,27037777..27038101) /locus_tag="TCM_030433" /product="Oligopeptide transporter isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005133001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007319t1" /inference="similar to AA sequence:Phytozome:GSVIVT01005133001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc125t21; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc107t14" CDS join(27033923..27034417,27034999..27035096, 27035946..27036515,27036751..27037006,27037102..27037284, 27037378..27037995) /locus_tag="TCM_030433" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG007319t1" /codon_start=1 /product="Oligopeptide transporter isoform 1" /protein_id="EOY28984.1" /db_xref="Phytozome:GSVIVT01005133001" /db_xref="TAIR:AT4G16370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23482" /translation="MATKNSEDPEKPNGNAAEDDRSPVEEVALVVPETDDPTLPVMTF RAWFLGLTSCMLLIFLNTFFTYRTQPLTISAILMQISVLPIGKFMARTLPTREYSLLG RSFSLNPGPFNMKEHVIITIFANCGVSFGGGDAYSIGAITVMKAYYKQSLNFLCGLLI VLTTQILGYGWAGMLRRYLVDPAEMWWPSNLAQVSLFRALHEKDTNKKGLTRMKFFLV ALVASFAYYSFPGYLFPVLTFFSWVCWVWPHSITAQQIGSGYHGLGIGAFTLDWAGIS AYHGSPLVTPWSSILNVGIGFVMFIYIIVPLCYWKFDTFDAGKFPIFSNQLFTSSGHK YDTTKILTPEYDLNISAYNSYGKLYLSPLFALSIGSGFARFTATLTHVALFHGSDILK QSRSAMKNVKLDIHARLMKRYKQVPEWWFFILLIGSIALSLLMSFVYKEEVQLPWWGM LFAFGLAWIVTLPIGVIQATTNQQPGYDIIAQFIIGYVLPGKPIANLLFKIYGRISTI HALSFLSDLKLGHYMKIPPRCMYTAQLVGTLVAGTVNLAVAWWMLDSIDNICDVEGKH PESPWTCPKYRVTFDASVIWGLIGPKRLFGPGGLYRNLVWLFLIGAVLPVPVWVLSKI FPEKKWIPLINIPVISYGFAGMPPATPTNIASWLITGTIFNYFVFRYHKRWWQKYNYV LSAALDAGTAFMGVLLFFALQNEGHNVKWWGTEVDHCPLASCPTAPGITVEGCPVFK" CDS join(27033923..27034417,27034999..27035096, 27035946..27036515,27036751..27037006,27037102..27037284, 27037378..27037599,27037777..27037995) /locus_tag="TCM_030433" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG007319t1" /codon_start=1 /product="Oligopeptide transporter isoform 2" /protein_id="EOY28985.1" /db_xref="Phytozome:GSVIVT01005133001" /db_xref="TAIR:AT4G16370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23482" /translation="MATKNSEDPEKPNGNAAEDDRSPVEEVALVVPETDDPTLPVMTF RAWFLGLTSCMLLIFLNTFFTYRTQPLTISAILMQISVLPIGKFMARTLPTREYSLLG RSFSLNPGPFNMKEHVIITIFANCGVSFGGGDAYSIGAITVMKAYYKQSLNFLCGLLI VLTTQILGYGWAGMLRRYLVDPAEMWWPSNLAQVSLFRALHEKDTNKKGLTRMKFFLV ALVASFAYYSFPGYLFPVLTFFSWVCWVWPHSITAQQIGSGYHGLGIGAFTLDWAGIS AYHGSPLVTPWSSILNVGIGFVMFIYIIVPLCYWKFDTFDAGKFPIFSNQLFTSSGHK YDTTKILTPEYDLNISAYNSYGKLYLSPLFALSIGSGFARFTATLTHVALFHGSDILK QSRSAMKNVKLDIHARLMKRYKQVPEWWFFILLIGSIALSLLMSFVYKEEVQLPWWGM LFAFGLAWIVTLPIGVIQATTNQQPGYDIIAQFIIGYVLPGKPIANLLFKIYGRISTI HALSFLSDLKLGHYMKIPPRCMYTAQLVGTLVAGTVNLAVAWWMLDSIDNICDVEGKH PESPWTCPKYRVTFDASVIWGLIGPKRLFGPGGLYRNLVWLFVFRYHKRWWQKYNYVL SAALDAGTAFMGVLLFFALQNEGHNVKWWGTEVDHCPLASCPTAPGITVEGCPVFK" gene complement(27038350..27042679) /locus_tag="TCM_030434" /note="dbxref CacaoGD:Thecc1EG030434" mRNA complement(join(27038350..27039037,27040207..27040369, 27040478..27040656,27041975..27042679)) /locus_tag="TCM_030434" /product="5'-AMP-activated protein kinase beta-2 subunit protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005136001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042037t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00810.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc125t15_C2" mRNA complement(join(27038502..27039037,27040207..27040369, 27040478..27040635,27041975..27042106)) /locus_tag="TCM_030434" /product="5'-AMP-activated protein kinase beta-2 subunit protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005136001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042037t1" /inference="similar to AA sequence:ricco:29826.m000735" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02185t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc125t15_C2" CDS complement(join(27038711..27039037,27040207..27040369, 27040478..27040656,27041975..27042133)) /locus_tag="TCM_030434" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042037t1" /codon_start=1 /product="5'-AMP-activated protein kinase beta-2 subunit protein isoform 1" /protein_id="EOY28986.1" /db_xref="Phytozome:POPTR_0016s00810.1" /db_xref="TAIR:AT4G16360.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCD2" /translation="MGNVNGREDGSSSTSGVEEEGGNSVHEAMAAPMGHSPPHSPTAT HSPLMFTPQVPIVPLQRPDEIHTPSQSWLQATIGYEDTCTEKGIPTMITWGYGGKEVA VEGSWDNWKTRIPLQRCGKDFTIMKVLPSGVYQYRFIVDGQWRYAPDLPWAQDDVGNA NNILDLQDYVPEDLESISSFEPPQSPESSYSNLPLGTEDFAKEPPLVPPHLQLPLLNL PAAHMEIPPPMSRPKHVILNHLYIQKGKIGQPVVALGSTHRFLAKYVTVVLYKPVQR" CDS complement(join(27038711..27039037,27040207..27040369, 27040478..27040635,27041975..27042049)) /locus_tag="TCM_030434" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29826.m000735; paralog of Thecc1EG042037t1" /codon_start=1 /product="5'-AMP-activated protein kinase beta-2 subunit protein isoform 2" /protein_id="EOY28987.1" /db_xref="TAIR:AT4G16360.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCD2" /translation="MAAPMGHSPPHSPTATHSPLMFTPQRPDEIHTPSQSWLQATIGY EDTCTEKGIPTMITWGYGGKEVAVEGSWDNWKTRIPLQRCGKDFTIMKVLPSGVYQYR FIVDGQWRYAPDLPWAQDDVGNANNILDLQDYVPEDLESISSFEPPQSPESSYSNLPL GTEDFAKEPPLVPPHLQLPLLNLPAAHMEIPPPMSRPKHVILNHLYIQKGKIGQPVVA LGSTHRFLAKYVTVVLYKPVQR" gene 27042820..27045465 /locus_tag="TCM_030435" /note="dbxref CacaoGD:Thecc1EG030435" mRNA join(27042820..27043182,27043370..27043468, 27044516..27044764,27044967..27045204) /locus_tag="TCM_030435" /product="Mitochondrial acyl carrier protein 3 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29826.m000732" /inference="similar to AA sequence:Phytozome:POPTR_0006s00750.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07213t00001" CDS join(27043147..27043182,27043370..27043468, 27044516..27044764,27044967..27045155) /locus_tag="TCM_030435" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Mitochondrial acyl carrier protein 3 isoform 1" /protein_id="EOY28988.1" /db_xref="Phytozome:POPTR_0006s00750.1" /db_xref="TAIR:AT5G47630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C6SWA3" /translation="MFENGHKNCVEDQAHNSQRAIAHQVHYVLQSADSQPKQALNRGS PVSRLVIKIYCFEALLNMQSIRSAILRHVSMRESTGEWSFFTCGGNMFKLLRHQICTS TGASNAQIMDRVIGLVKKYDKIDASKVTETADFQKDLCLDSLDRVELVMAFEEEFSFE IPDEKADKLTCCADVAKYIVSRSGSDITKS" mRNA join(<27043358..27043570,27044516..27044764, 27044967..27045465) /locus_tag="TCM_030435" /product="Mitochondrial acyl carrier protein 3 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29826.m000732" /inference="similar to AA sequence:Phytozome:POPTR_0006s00750.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.63 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00034t00004; inference alignment:Newbler:10:TSA:cgbaL_g07213t00001" CDS join(<27043358..27043570,27044516..27044764, 27044967..27045155) /locus_tag="TCM_030435" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Mitochondrial acyl carrier protein 3 isoform 2" /protein_id="EOY28989.1" /db_xref="Phytozome:POPTR_0006s00750.1" /db_xref="TAIR:AT5G47630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C6SWA3" /translation="AAIKQAHNSQRAIAHQVHYVLQSADSQPKQALNRGSPVSHQCLL STFHFLLPTISPFLFLFLVCFLVFHLWVSRLVIKIYCFEALLNMQSIRSAILRHVSMR ESTGEWSFFTCGGNMFKLLRHQICTSTGASNAQIMDRVIGLVKKYDKIDASKVTETAD FQKDLCLDSLDRVELVMAFEEEFSFEIPDEKADKLTCCADVAKYIVSRSGSDITKS" gene complement(27045392..27047719) /locus_tag="TCM_030436" /note="dbxref CacaoGD:Thecc1EG030436" mRNA complement(join(27045392..27045877,27047318..27047719)) /locus_tag="TCM_030436" /product="Pollen Ole e 1 allergen and extensin family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g00980.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s00740.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g16041t00001" CDS complement(join(27045555..27045877,27047318..27047558)) /locus_tag="TCM_030436" /codon_start=1 /product="Pollen Ole e 1 allergen and extensin family protein, putative" /protein_id="EOY28990.1" /db_xref="Phytozome:POPTR_0006s00740.1" /db_xref="TAIR:AT5G47635.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCD0" /translation="MVSYFCYCKTLGVVVMLLLIQSSMAESDEHPLLYESSSREEMMQ MAGYGEEKLSTVLVTGTVLCEACLHAEPQLRAWPISGALVAVKCQTPCKRISGSAQAV TDEYGDFLIDLPSHLHGIPNLPKICAVKVLRIPKNSMCRPAFVKKHKGLRFSSVGNGI RTYTAGRIRFQHITSKPLKACIGRAKQ" gene complement(27048933..27049913) /locus_tag="TCM_030437" /note="dbxref CacaoGD:Thecc1EG030437" mRNA complement(27048933..27049913) /locus_tag="TCM_030437" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(27049494..27049715) /locus_tag="TCM_030437" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY28991.1" /translation="MMMLLLNDPISSPLRFDDDAVNDQRFGGEGRERVPDHHLINPFS LKSVGQSANQQIRWMAQVNANRAALACPH" gene 27050348..27052449 /locus_tag="TCM_030438" /note="dbxref CacaoGD:Thecc1EG030438" mRNA join(27050348..27051278,27052074..27052121, 27052212..27052449) /locus_tag="TCM_030438" /product="Nuclear transcription factor Y subunit B-3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01014673001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002410t1" /inference="similar to AA sequence:Phytozome:GSVIVT01014673001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc4379t2" CDS join(27050722..27051278,27052074..27052121, 27052212..27052257) /locus_tag="TCM_030438" /note="paralog of Thecc1EG002410t1" /codon_start=1 /product="Nuclear transcription factor Y subunit B-3" /protein_id="EOY28992.1" /db_xref="Phytozome:GSVIVT01014673001" /db_xref="TAIR:AT4G14540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGJ3" /translation="MADSDNDSGGHNNSNANNELSPREQDRFLPIANVSRIMKKALPA NAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVE PLKVYLHKFREMEGERTALGRQPTDQRDGSSADDSTNAAAGGAFAGPAMYGGMQSTMM LMGHHHHQSHMYGSGTSSGSSSGRPRLYQIFAWSSHECRIDPLDLLWGRGKWKEKK" gene complement(27052870..27059972) /locus_tag="TCM_030439" /note="dbxref CacaoGD:Thecc1EG030439" mRNA complement(join(27052870..27053729,27054481..27054531, 27054605..27054682,27055456..27055566,27055733..27055798, 27056356..27056484,27059532..27059595,27059923..27059972)) /locus_tag="TCM_030439" /product="Nudix hydrolase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400030392" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030441t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s00720.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9151t2" mRNA complement(join(27053227..27053729,27054481..27054531, 27054605..27054682,27055456..27055593,27055733..27055792)) /locus_tag="TCM_030439" /product="Nudix hydrolase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400030392" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030441t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00770.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9151t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9151t2" CDS complement(join(27053538..27053729,27054481..27054531, 27054605..27054682,27055456..27055566,27055733..27055798, 27056356..27056445)) /locus_tag="TCM_030439" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030441t1" /codon_start=1 /product="Nudix hydrolase, putative isoform 1" /protein_id="EOY28993.1" /db_xref="Phytozome:POPTR_0006s00720.1" /db_xref="TAIR:AT5G47650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EHC3" /translation="MSASANSTTAIVIAEMKNEFKNLNSLMRPTGKKVVWIKLPIQHV NLVEAAVKPNYLMLAYWIPGGTRTLPANASHRIGIGVFVMNEKREVLVVQENTGRFRG TGVWKFPTGVVNEGGDLCTAAVREVKEETAWMPFEEYAAQPFVQTNELSNCIVDICKA KEDRKYSGFVPVPTSSLFSYEKNYMYFNTRDFGGR" CDS complement(join(27053538..27053729,27054481..27054531, 27054605..27054682,27055456..27055554)) /locus_tag="TCM_030439" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030441t1" /codon_start=1 /product="Nudix hydrolase, putative isoform 2" /protein_id="EOY28994.1" /db_xref="Phytozome:POPTR_0016s00770.1" /db_xref="TAIR:AT5G47650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EHC3" /translation="MLAYWIPGGTRTLPANASHRIGIGVFVMNEKREVLVVQENTGRF RGTGVWKFPTGVVNEGGDLCTAAVREVKEETAWMPFEEYAAQPFVQTNELSNCIVDIC KAKEDRKYSGFVPVPTSSLFSYEKNYMYFNTRDFGGR" gene complement(27058421..27069303) /locus_tag="TCM_030441" /note="dbxref CacaoGD:Thecc1EG030441" mRNA complement(join(27058421..27058450,27059532..27059595, 27061802..27062057,27063862..27063955,27065504..27065691, 27065964..27066072,27066482..27066516,27066639..27066689, 27066763..27066840,27067651..27067788,27067928..27067993, 27068455..27068669,27068819..27068940,27069016..27069303)) /locus_tag="TCM_030441" /product="Nudix hydrolase" /inference="alignment:exonerate- protein:2:ricco:29966.m000231" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002417t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s00720.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02396t00001" mobile_element complement(27059671..27059778) /note="source:CACAO_Mutator_E1376_scaffold_6 1915 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(27059896..27060057) /note="source:CACAO_Mutator_E1376_scaffold_6 1862 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(27060176..27060319) /note="source:CACAO_Mutator_E1376_scaffold_6 1862 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element 27060461..27060570 /note="source:CACAO_Mutator_E1376_scaffold_6 1914 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(27061477..27061552) /note="source:CACAO_M_E57378_F1_scaffold_9 28 121" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(27061617..27064770) /locus_tag="TCM_030444" /note="dbxref CacaoGD:Thecc1EG030444" mRNA complement(join(27061617..27062422,27063145..27063207, 27063428..27063503,27063591..27063716,27063862..27063955, 27064137..27064379,27064680..27064770)) /locus_tag="TCM_030444" /product="Histone acetyltransferase complex component-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030408t1" /inference="similar to AA sequence:ricco:29826.m000753" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9161t2" CDS complement(join(27061893..27062057,27063862..27063955, 27065504..27065691,27065964..27066072,27066482..27066516, 27066639..27066689,27066763..27066840,27067651..27067788, 27067928..27067993,27068455..27068669,27068819..27068939)) /locus_tag="TCM_030441" /note="paralog of Thecc1EG002417t1" /codon_start=1 /product="Nudix hydrolase" /protein_id="EOY28995.1" /db_xref="Phytozome:POPTR_0006s00720.1" /db_xref="TAIR:AT5G47650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EHC3" /translation="MMLRRIALLGCTITNGNLWSLLGFSAKIPTWPAVKVSSSTAGYS IRYRAMSASANSTPVNVIAENEEQVQEFKQLNAVNDRYGGVIVEMSEPMDPAAFASSL RASIAQWRHQGKKGVWIKLPIQHVNLVEAAVKEGFWFHHAEPNYLMLAYWIPGGTHTL PANASHRVGVGAFVMNEKREVLVVQENTGRFRGTGVWKFPTGVVNEGEDLCTAAVREV KEETAIDTKFIEVLAFRQSHKSFFEKSDIFFMCLMEPLSFEIQKQESEIEAAQWMPFE EYAAQPFVQTNELSKYIVDICKAKEDGKYSGFVPVPTSSPFSDEKNYMYFNYRDLNGH ADNRVLVNRTIYRFLFICPDWNADDEILLPEILSLEDFGESHLVSPELSKWGKDLEVA LWDSEASQGLLRINTHDDALQCLRVYV" CDS complement(join(27062100..27062422,27063145..27063207, 27063428..27063503,27063591..27063716,27063862..27063955, 27064137..27064379,27064680..27064759)) /locus_tag="TCM_030444" /note="dbxref ricco:29826.m000753; paralog of Thecc1EG030408t1" /codon_start=1 /product="Histone acetyltransferase complex component-like protein" /protein_id="EOY28996.1" /db_xref="TAIR:AT4G16420.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IH29" /translation="MRNMKYRGREFIQYEEHEVLGLLRIDLPRTKDGKRALCHCNYCN KDIRIKCAVCPDLDQCIECFSAGAEVTPHKMNHPYGCHGKSLLETSFSLADNLLYCQV FCSILSADNRVLVNRTIYRFLFICPDWNADDEILLPEGIEMCGLGIWAKVVEHVGTKT KEKCIEHYDNVYMKSPYVPLADVCHVVGKNRRELLAMAKGRGEDKKGSCMLGELTVKE ESSFLLQESTRQSNRPIQEVDRANNPLILTFKKQVTDPDMETSDNSKCFKWLLRKSSL VRSIEEEVANKTVPEGIIDSLLLIEAMDRKMKFPPSNSMKEAFCTVVLHCTLATLSQP " gene 27068292..27072774 /locus_tag="TCM_030445" /note="dbxref CacaoGD:Thecc1EG030445" mRNA join(27068292..27069978,27070813..27072020) /locus_tag="TCM_030445" /product="Duplicated homeodomain-like superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00760.1" /inference="similar to AA sequence:ricco:29610.m000402" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9149t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9149t5" mRNA join(27069154..27069978,27070810..27071663, 27071792..27072774) /locus_tag="TCM_030445" /product="Duplicated homeodomain-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00760.1" /inference="similar to AA sequence:ricco:29610.m000402" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9149t5" CDS join(27069617..27069978,27070810..27071663, 27071792..27071832) /locus_tag="TCM_030445" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29610.m000402" /codon_start=1 /product="Duplicated homeodomain-like superfamily protein, putative isoform 1" /protein_id="EOY28997.1" /db_xref="TAIR:AT5G47660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IH13" /translation="MELFNGGRETFPHHVAPFPDLTAIGMIESAEDSMMGDHRPNLPP QKLRPIRYNGRSPASSQAEDTSEFAEVVELVGDEVCPVNGDSGEYLEPPVKAEVGDVV DTGGGDGPPNSEHGGDSSSSSSSDSDDNDMSTTLNEPLNRKRKRKKSKKIELFLEKLV MKVMEKQELMHKQLIETIEKRERERIIREEAWKQQEMERIKRDEEARAQETSRSIALI SFIKNVLGHDIEIPVQSTISCMEETGGKEMSEGHIQKDMISLCDPINRWQEGKMQANG GENHVHEDIGINCDPSNRRWPDAEVQALIMLRSALEHKFRVTGSKCSIWDEISVGMYN MGYCRSAKKCKEKWENINKYFRKSMGSGKKHLENSKRCAYFHELDMLYKNGLVSPANH VNWTKDENEDRGELTPKAGSENVIGA" CDS join(27069617..27069978,27070813..27071671) /locus_tag="TCM_030445" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29610.m000402" /codon_start=1 /product="Duplicated homeodomain-like superfamily protein, putative isoform 2" /protein_id="EOY28998.1" /translation="MELFNGGRETFPHHVAPFPDLTAIGMIESAEDSMMGDHRPNLPP QKLRPIRYNGRSPASSQAEDTSEFAEVVELVGDEVCPVNGDSGEYLEPPVKAEVGDVV DTGGGDGPPNSEHGGDSSSSSSDSDDNDMSTTLNEPLNRKRKRKKSKKIELFLEKLVM KVMEKQELMHKQLIETIEKRERERIIREEAWKQQEMERIKRDEEARAQETSRSIALIS FIKNVLGHDIEIPVQSTISCMEETGGKEMSEGHIQKDMISLCDPINRWQEGKMQANGG ENHVHEDIGINCDPSNRRWPDAEVQALIMLRSALEHKFRVTGSKCSIWDEISVGMYNM GYCRSAKKCKEKWENINKYFRKSMGSGKKHLENSKRCAYFHELDMLYKNGLVSPANHV NWTKDENEDRGECQ" gene 27073236..27075771 /locus_tag="TCM_030446" /note="dbxref CacaoGD:Thecc1EG030446" mRNA join(27073236..27073396,27073746..27073796, 27074898..27075771) /locus_tag="TCM_030446" /product="Nuclear transcription factor Y subunit B-6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01002895001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030636t1" /inference="similar to AA sequence:Phytozome:GSVIVT01002895001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1741t7" CDS join(27073342..27073396,27073746..27073796, 27074898..27075487) /locus_tag="TCM_030446" /note="paralog of Thecc1EG030636t1" /codon_start=1 /product="Nuclear transcription factor Y subunit B-6" /protein_id="EOY28999.1" /db_xref="Phytozome:GSVIVT01002895001" /db_xref="TAIR:AT5G47670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5VNF4" /translation="MERGGFHGYRKLPNNTTSDVSSAFIVVVSFIGYGSGLKVPEMNM RMAEVNHTNNHHSNSDDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQE CVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYRELEG ERGSIRGEPLGKRAVDYGALSVAAFAPAFHMGHHHGFFGGGGAMGGYLKDASNAGSSQ AAVANGEPFGHHK" gene 27076984..27093291 /locus_tag="TCM_030447" /note="dbxref CacaoGD:Thecc1EG030447" mRNA join(27076984..27077633,27079733..27079936, 27080042..27080223,27080672..27080798,27080919..27081137, 27081359..27081575,27081654..27081799,27081907..27082052, 27082556..27082705,27082814..27082862,27082962..27083153, 27084098..27084280,27084517..27084671,27084751..27084877, 27085002..27085151,27085245..27085304,27085472..27085608, 27085744..27085861,27085959..27086093,27086207..27086403, 27087015..27087171,27087357..27087503,27087886..27087966, 27088055..27088720,27088823..27088906,27089556..27089635, 27090356..27090407,27090506..27090592,27090691..27090734, 27091023..27091085,27091159..27091310,27091624..27092054, 27092156..27093111) /locus_tag="TCM_030447" /product="Androgen induced inhibitor of proliferation / pds5 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29920.m000101" /inference="similar to AA sequence:ricco:29920.m000101" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9332t2" mRNA join(27077257..27077633,27079733..27079936, 27080042..27080223,27080672..27080798,27080919..27081137, 27081359..27081575,27081654..27081799,27081907..27082052, 27082556..27082705,27082814..27082862,27082962..27083153, 27084098..27084280,27084517..27084671,27084751..27084877, 27085002..27085151,27085245..27085304,27085472..27085608, 27085744..27085861,27085959..27086093,27086207..27086403, 27087015..27087171,27087357..27087503,27087886..27087966, 27088055..27088720,27088823..27088906,27089556..27089635, 27090356..27090410,27090506..27090592,27090691..27090734, 27091023..27091085,27091159..27091310,27091624..27092054, 27092156..27093291) /locus_tag="TCM_030447" /product="Androgen induced inhibitor of proliferation / pds5 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29920.m000101" /inference="similar to AA sequence:ricco:29920.m000101" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9332t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9332t2" CDS join(27077541..27077633,27079733..27079936, 27080042..27080223,27080672..27080798,27080919..27081137, 27081359..27081575,27081654..27081799,27081907..27082052, 27082556..27082705,27082814..27082862,27082962..27083153, 27084098..27084280,27084517..27084671,27084751..27084877, 27085002..27085151,27085245..27085304,27085472..27085608, 27085744..27085861,27085959..27086093,27086207..27086403, 27087015..27087171,27087357..27087503,27087886..27087966, 27088055..27088720,27088823..27088906,27089556..27089635, 27090356..27090410,27090506..27090592,27090691..27090734, 27091023..27091085,27091159..27091310,27091624..27092054, 27092156..27092206) /locus_tag="TCM_030447" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29920.m000101" /codon_start=1 /product="Androgen induced inhibitor of proliferation / pds5 isoform 2" /protein_id="EOY29001.1" /db_xref="TAIR:AT5G47690.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IH10" /translation="MAQKLEQQLKEVGSKLESPPSTKDALLKLLKQAATCLSELDQSP PSSIMESMQPFLNAIVKPELLKHQDRDAKLLVATCICEITRITAPEAPYSDDVLKDIF HLIVGTFHGLSDTSGPSFGRRVVILETLAKYRSCVVMLDLECDDLVNEMFSTFFAVVR DDHPESVLSSMQTIMIVVLEESEDIRDDLLLIILSALGRNKSDVTPAARRLAMNVIEQ CSGKLEAGIKQFLISLMSGDNQSVNSEIDYHEVIYDVYCCAPQILSGVVPYLTGELLT DQLDTRLRAVGLVGDLFALPGSTISEAFQPIFSEFLKRLTDRVVSVRMSVLEHVKSCL LSYPSRSEAPEIISALCDRLLDYDENVRKQVVAVICDVACHSLVSIPIETVKLVAERL RDKSKLVKKYTMERLAEIFRVYCASCSDGSINPDEFDWIPGRILRCFYDKDFRSETIE SVLCGFLFPTEFSIRDKVKCWIRVFSGFDKIEVKALERMLEQKQRLQQEMQKYLSLRQ MHQDSDAPEIQKKVLFGFRIMSRPFSDPVKAEECFQILDQLKDANIWKILMNLLDPNT SFHQASSGRDDLLKILGEKHRLYDFLSTLSLKCSYLLFNKEHVKEILLEAAVQKSTGN TQYTQSCMNLLVILARFCPLLLGGAEEELVNFLKDDNEIIIEGILHVLAKAGGTIREQ LAVLSSSIDLILERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKADGSAKECWDDKSEICL LKVFGIKTLVKSYLPVKDAHLRPGIDDLLVLLGNILSFGEISEDIESSSVDKAHLRLA AAKAVLRLSRTWDHKIPLDVFHLTLRTPEISFPQARKLFLSKVHQYIKDRLLDAKYAC AFLFSITGSKLLECDEEKQNLADIFQMCQQAKARQVAIQADTNSSTTYPEYILPYLVH ALAHHSCPNTDECKDVKAFELIYRQLYMTIFMLVNKDEDTKSEAGANKEKESISMIFS IFQSIKRSEDLLDATKSKNSHAICDLGLSVMKRLAYKEEDLQGLIQSVSLPPLLYKPY EKKEGEDSQAGEGQTWLADENILSHFESLKLECDGTAHMEIAEDESLKDSEIDGNEVP LRKMIKRLKSKGAKDGKAKKNKSPSAEAKDAENDVDILKMVREINLDSLVMPSKFESS NGHKHFPTKKAKLEQEHQKGKKRKITGADSVPVPKRRRSLPAHGAFKISRSASTVPSR DSGDDWHQVKDSSFQSTEMKVVELHDSKDKMPTHQKLNENTESDYLVSCIRRKRSVSS KGKGKGSDWVHSDEENEDGADDENVEKLGTTIGTKSVAGSSKKQKRRSISGLAKCSTK EGGIDIADLIGHRIKVWWPMDKQFYAGTVKSYDPIKRKHVVVLYDDGDVEVLRLERER WELIDTGRKSGKKANSMKGSKGARKELSPGQKSKSSGGSRQNKSSLKIVKGKRTPKKN LKHPLRGALNSNFTEADAEEKTDASKSKPTAVNKIHKINSGDSEGAHTEMVDENLTDR EESEKEVASVSQERCSEDMKGSPNQAEQSDEVKSDADGNLSEDVDSISGKAQKGEEEE KSHSEEKVAGDSTEDLREDASKATDTEPKETQESDNSESRSPILKKFRKGSSMLSDTV DSGISDDEPLSKWKRKAGKSGSKRVQ" CDS join(27077541..27077633,27079733..27079936, 27080042..27080223,27080672..27080798,27080919..27081137, 27081359..27081575,27081654..27081799,27081907..27082052, 27082556..27082705,27082814..27082862,27082962..27083153, 27084098..27084280,27084517..27084671,27084751..27084877, 27085002..27085151,27085245..27085304,27085472..27085608, 27085744..27085861,27085959..27086093,27086207..27086403, 27087015..27087171,27087357..27087503,27087886..27087966, 27088055..27088720,27088823..27088906,27089556..27089635, 27090356..27090407,27090506..27090592,27090691..27090734, 27091023..27091085,27091159..27091310,27091624..27092054, 27092156..27092206) /locus_tag="TCM_030447" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29920.m000101" /codon_start=1 /product="Androgen induced inhibitor of proliferation / pds5 isoform 1" /protein_id="EOY29000.1" /db_xref="TAIR:AT5G47690.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IH10" /translation="MAQKLEQQLKEVGSKLESPPSTKDALLKLLKQAATCLSELDQSP PSSIMESMQPFLNAIVKPELLKHQDRDAKLLVATCICEITRITAPEAPYSDDVLKDIF HLIVGTFHGLSDTSGPSFGRRVVILETLAKYRSCVVMLDLECDDLVNEMFSTFFAVVR DDHPESVLSSMQTIMIVVLEESEDIRDDLLLIILSALGRNKSDVTPAARRLAMNVIEQ CSGKLEAGIKQFLISLMSGDNQSVNSEIDYHEVIYDVYCCAPQILSGVVPYLTGELLT DQLDTRLRAVGLVGDLFALPGSTISEAFQPIFSEFLKRLTDRVVSVRMSVLEHVKSCL LSYPSRSEAPEIISALCDRLLDYDENVRKQVVAVICDVACHSLVSIPIETVKLVAERL RDKSKLVKKYTMERLAEIFRVYCASCSDGSINPDEFDWIPGRILRCFYDKDFRSETIE SVLCGFLFPTEFSIRDKVKCWIRVFSGFDKIEVKALERMLEQKQRLQQEMQKYLSLRQ MHQDSDAPEIQKKVLFGFRIMSRPFSDPVKAEECFQILDQLKDANIWKILMNLLDPNT SFHQASSGRDDLLKILGEKHRLYDFLSTLSLKCSYLLFNKEHVKEILLEAAVQKSTGN TQYTQSCMNLLVILARFCPLLLGGAEEELVNFLKDDNEIIIEGILHVLAKAGGTIREQ LAVLSSSIDLILERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKADGSAKECWDDKSEICL LKVFGIKTLVKSYLPVKDAHLRPGIDDLLVLLGNILSFGEISEDIESSSVDKAHLRLA AAKAVLRLSRTWDHKIPLDVFHLTLRTPEISFPQARKLFLSKVHQYIKDRLLDAKYAC AFLFSITGSKLLECDEEKQNLADIFQMCQQAKARQVAIQADTNSSTTYPEYILPYLVH ALAHHSCPNTDECKDVKAFELIYRQLYMTIFMLVNKDEDTKSEAGANKEKESISMIFS IFQSIKRSEDLLDATKSKNSHAICDLGLSVMKRLAYKEEDLQGLIQSVSLPPLLYKPY EKKEGEDSQAGEGQTWLADENILSHFESLKLECDGTAHMEIAEDESLKDSEIDGNEVP LRKMIKRLKSKGAKDGKAKKNKSPSAEAKDAENDVDILKMVREINLDSLVMPSKFESS NGHKHFPTKKAKLEQEHQKGKKRKITGADSVPVPKRRRSLPAHGAFKISRSASTVPSR DSGDDWHQVKDSSFQSTEMKVVELHDSKDKMPTHQKLNENTESDYLVSCIRRKRSVSS KGKGKGSDWVHSDEENEDGADDENVEKLGTTIGTKSVAGSSKKQKRRSISGLAKCSTK EGGIDIADLIGHRIKVWWPMDKQFYAGTVKSYDPIKRKHVVLYDDGDVEVLRLERERW ELIDTGRKSGKKANSMKGSKGARKELSPGQKSKSSGGSRQNKSSLKIVKGKRTPKKNL KHPLRGALNSNFTEADAEEKTDASKSKPTAVNKIHKINSGDSEGAHTEMVDENLTDRE ESEKEVASVSQERCSEDMKGSPNQAEQSDEVKSDADGNLSEDVDSISGKAQKGEEEEK SHSEEKVAGDSTEDLREDASKATDTEPKETQESDNSESRSPILKKFRKGSSMLSDTVD SGISDDEPLSKWKRKAGKSGSKRVQ" gene 27093164..27096087 /locus_tag="TCM_030448" /note="dbxref CacaoGD:Thecc1EG030448" mRNA join(27093164..27093505,27093965..27094084, 27094653..27094748,27095528..27096087) /locus_tag="TCM_030448" /product="Calcium-dependent lipid-binding (CaLB domain) family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026911t3" /inference="similar to AA sequence:ricco:29920.m000100" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9334t1" CDS join(27093974..27094084,27094653..27094748, 27095528..27095824) /locus_tag="TCM_030448" /note="dbxref ricco:29920.m000100; paralog of Thecc1EG026911t3" /codon_start=1 /product="Calcium-dependent lipid-binding (CaLB domain) family protein" /protein_id="EOY29002.1" /db_xref="TAIR:AT5G47710.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HC25" /translation="MGELLGLLKVVVVQGKRLVIRDFKSSDPYVVVKLGDQVAKTKVI NSCLNPVWNEELTFSLTDPVGVLNLEVFDKDRFKADDKMGHAYLNLQPLVSAARMSHV LQVSSGEMPLRKVVPDSDNCLVRDSSICCINGEVVQSVWLRLCAVESGEIELKVRLIE TSDGPSR" gene 27096364..27098741 /locus_tag="TCM_030450" /note="dbxref CacaoGD:Thecc1EG030450" mRNA join(27096364..27096927,27097602..27097718, 27097810..27097999,27098172..27098741) /locus_tag="TCM_030450" /product="Oxidoreductase, 2OG-Fe(II) oxygenase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g12700.1" /inference="similar to AA sequence:frave:gene19843" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17154t2" mRNA join(27096487..27096910,27097602..27097718, 27097810..27097999,27098178..27098607) /locus_tag="TCM_030450" /product="Oxidoreductase, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g12700.1" /inference="similar to AA sequence:ricco:29826.m000728" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b029450t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17154t2" mRNA join(27096487..27096927,27097602..27097718, 27097810..27097999,27098178..27098543) /locus_tag="TCM_030450" /product="Oxidoreductase, 2OG-Fe(II) oxygenase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g12700.1" /inference="similar to AA sequence:frave:gene19843" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00304t00007; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17154t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc314t29_C1" mRNA join(27096487..27096927,27097602..27097718, 27097810..27097999,27098182..27098543) /locus_tag="TCM_030450" /product="Oxidoreductase, 2OG-Fe(II) oxygenase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g12700.1" /inference="similar to AA sequence:frave:gene19843" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00304t00005; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc6g17154t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc314t29_C1" CDS join(27096709..27096927,27097602..27097718, 27097810..27097999,27098172..27098371) /locus_tag="TCM_030450" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene19843" /codon_start=1 /product="Oxidoreductase, 2OG-Fe(II) oxygenase family protein isoform 1" /protein_id="EOY29003.1" /db_xref="TAIR:AT2G22260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SIE0" /translation="MSLLKLKAVPDPDSNPNDNAKKTQTIDLGNGSEVVYVPRFVAYD DGWEFFNYLDKHIPWTRPTLRVFGRSCLQPRDTCYVATAGLPDLIYSGYQPHAYSWDD FPPLKDILDAVHKMLPGTRFNSLLLNRYKGSNDYAGWHADDEKLYGSTPEIASVSFGC EREFFLKKKSRKSSQVLERSDEGPPSKRLKKSNNVDQHCFRLKHGSLLVMRGYTQRDW LHSVPKRAKAETTRINLTFRHVL" CDS join(27096709..27096927,27097602..27097718, 27097810..27097999,27098178..27098371) /locus_tag="TCM_030450" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene19843" /codon_start=1 /product="Oxidoreductase, 2OG-Fe(II) oxygenase family protein isoform 2" /protein_id="EOY29004.1" /db_xref="TAIR:AT2G22260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SIE0" /translation="MSLLKLKAVPDPDSNPNDNAKKTQTIDLGNGSEVVYVPRFVAYD DGWEFFNYLDKHIPWTRPTLRVFGRSCLQPRDTCYVATAGLPDLIYSGYQPHAYSWDD FPPLKDILDAVHKMLPGTRFNSLLLNRYKGSNDYAGWHADDEKLYGSTPEIASVSFGC EREFFLKKKSRKSSQERSDEGPPSKRLKKSNNVDQHCFRLKHGSLLVMRGYTQRDWLH SVPKRAKAETTRINLTFRHVL" CDS join(27096709..27096927,27097602..27097718, 27097810..27097999,27098182..27098252) /locus_tag="TCM_030450" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene19843" /codon_start=1 /product="Oxidoreductase, 2OG-Fe(II) oxygenase family protein isoform 3" /protein_id="EOY29005.1" /db_xref="TAIR:AT2G22260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SIE0" /translation="MSLLKLKAVPDPDSNPNDNAKKTQTIDLGNGSEVVYVPRFVAYD DGWEFFNYLDKHIPWTRPTLRVFGRSCLQPRDTCYVATAGLPDLIYSGYQPHAYSWDD FPPLKDILDAVHKMLPGTRFNSLLLNRYKGSNDYAGWHADDEKLYGSTPEIASVSFGC EREFFLKKKSRKSSQDLMKDLHRRGLRKATTLISTALD" CDS join(27096842..27096910,27097602..27097718, 27097810..27097999,27098178..27098371) /locus_tag="TCM_030450" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29826.m000728" /codon_start=1 /product="Oxidoreductase, putative isoform 4" /protein_id="EOY29006.1" /db_xref="TAIR:AT2G22260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SA55" /translation="MAGNSSITSTNTFLGQGPPYASLPRDTCYVATAGLPDLIYSGYQ PHAYSWDDFPPLKDILDAVHKMLPGTRFNSLLLNRYKGSNDYAGWHADDEKLYGSTPE IASVSFGCEREFFLKKKSRKSSQERSDEGPPSKRLKKSNNVDQHCFRLKHGSLLVMRG YTQRDWLHSVPKRAKAETTRINLTFRHVL" gene 27098791..27104275 /locus_tag="TCM_030451" /note="dbxref CacaoGD:Thecc1EG030451" mRNA join(27098791..27099339,27099704..27099802, 27099885..27100058,27100163..27100268,27100731..27100869, 27101154..27101231,27101320..27101385,27102070..27102155, 27102435..27102534,27102617..27102727,27102859..27102900, 27103064..27103150,27103406..27103491,27103978..27104275) /locus_tag="TCM_030451" /product="Thiolase family protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002426t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s00630.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9334t2" mRNA join(27098791..27099135,27099233..27099339, 27099704..27099802,27099885..27100058,27100163..27100268, 27100731..27100869,27101154..27101231,27101320..27101385, 27102070..27102155,27102435..27102534,27102617..27102727, 27102859..27102900,27103064..27103150,27103406..27103491, 27103978..27104275) /locus_tag="TCM_030451" /product="Thiolase family protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002426t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s00630.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:PASA:2:TSA:puevd3b029451t1a3; alternateUTRof:Thecc1EG030451t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9334t2" mRNA join(27098791..27099029,27099193..27099339, 27099704..27099802,27099885..27100058,27100163..27100268, 27100731..27100869,27101154..27101231,27101320..27101385, 27102070..27102155,27102435..27102534,27102617..27102727, 27102859..27102900,27103064..27103150,27103406..27103491, 27103978..27104275) /locus_tag="TCM_030451" /product="Thiolase family protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002426t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s00630.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:PASA:2:TSA:puevd3b029451t1a2; alternateUTRof:Thecc1EG030451t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9334t2" CDS join(27099279..27099339,27099704..27099802, 27099885..27100058,27100163..27100268,27100731..27100869, 27101154..27101231,27101320..27101385,27102070..27102155, 27102435..27102534,27102617..27102727,27102859..27102900, 27103064..27103150,27103406..27103491,27103978..27104011) /locus_tag="TCM_030451" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002426t1" /codon_start=1 /product="Thiolase family protein isoform 1" /protein_id="EOY29007.1" /db_xref="Phytozome:POPTR_0006s00630.1" /db_xref="TAIR:AT5G47720.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HC23" /translation="MAPPASSSSSSSSDSVIRPRDVCIVGVARTPMGAFLGSLSSFSA TQLGSIAIHSALKRANLDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSIICTTV NKVCASGMKAVMLASQTIQLGINDVVIAGGMESMSNAPKYLAEARKGSRLGHDTIIDG MLKDGLWDVYNDFGMGVCAEICADQHNITREEQDSYAIQSFERGIAAQNNGLLAWEIV PVEVSGRRGKPFTIIDRDEGLGKFDAAKLRKLRPSFKEEGGSVTAGNASSISDGAAAI VLVSGEKATKLGLQVVAKIRGYADAAQAPELFTTAPALAIPKAISAAGLEASQIDYYE INEAFSVVALANQKLLGLNPEKVNVHGGAVSLGHPLGCSGARILVTLLGVMRQKNGKF GVGGICNGGGGASALVFELMPVTKVGPSLL" CDS join(27099279..27099339,27099704..27099802, 27099885..27100058,27100163..27100268,27100731..27100869, 27101154..27101231,27101320..27101385,27102070..27102155, 27102435..27102534,27102617..27102727,27102859..27102900, 27103064..27103150,27103406..27103491,27103978..27104011) /locus_tag="TCM_030451" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002426t1" /codon_start=1 /product="Thiolase family protein isoform 1" /protein_id="EOY29008.1" /db_xref="Phytozome:POPTR_0006s00630.1" /db_xref="TAIR:AT5G47720.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HC23" /translation="MAPPASSSSSSSSDSVIRPRDVCIVGVARTPMGAFLGSLSSFSA TQLGSIAIHSALKRANLDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSIICTTV NKVCASGMKAVMLASQTIQLGINDVVIAGGMESMSNAPKYLAEARKGSRLGHDTIIDG MLKDGLWDVYNDFGMGVCAEICADQHNITREEQDSYAIQSFERGIAAQNNGLLAWEIV PVEVSGRRGKPFTIIDRDEGLGKFDAAKLRKLRPSFKEEGGSVTAGNASSISDGAAAI VLVSGEKATKLGLQVVAKIRGYADAAQAPELFTTAPALAIPKAISAAGLEASQIDYYE INEAFSVVALANQKLLGLNPEKVNVHGGAVSLGHPLGCSGARILVTLLGVMRQKNGKF GVGGICNGGGGASALVFELMPVTKVGPSLL" CDS join(27099279..27099339,27099704..27099802, 27099885..27100058,27100163..27100268,27100731..27100869, 27101154..27101231,27101320..27101385,27102070..27102155, 27102435..27102534,27102617..27102727,27102859..27102900, 27103064..27103150,27103406..27103491,27103978..27104011) /locus_tag="TCM_030451" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG002426t1" /codon_start=1 /product="Thiolase family protein isoform 1" /protein_id="EOY29009.1" /db_xref="Phytozome:POPTR_0006s00630.1" /db_xref="TAIR:AT5G47720.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HC23" /translation="MAPPASSSSSSSSDSVIRPRDVCIVGVARTPMGAFLGSLSSFSA TQLGSIAIHSALKRANLDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSIICTTV NKVCASGMKAVMLASQTIQLGINDVVIAGGMESMSNAPKYLAEARKGSRLGHDTIIDG MLKDGLWDVYNDFGMGVCAEICADQHNITREEQDSYAIQSFERGIAAQNNGLLAWEIV PVEVSGRRGKPFTIIDRDEGLGKFDAAKLRKLRPSFKEEGGSVTAGNASSISDGAAAI VLVSGEKATKLGLQVVAKIRGYADAAQAPELFTTAPALAIPKAISAAGLEASQIDYYE INEAFSVVALANQKLLGLNPEKVNVHGGAVSLGHPLGCSGARILVTLLGVMRQKNGKF GVGGICNGGGGASALVFELMPVTKVGPSLL" mobile_element complement(27101557..27101611) /note="source:CACAO_M_S_E101631_F270_scaffold_9 2107 2161" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27103286..27103329) /note="source:scaffold_5_CACTA_0580 13316 13359" /mobile_element_type="transposon:TIR/CACTA" gene 27104980..27110462 /locus_tag="TCM_030452" /note="dbxref CacaoGD:Thecc1EG030452" mRNA join(27104980..27105485,27107425..27108134, 27108278..27109839) /locus_tag="TCM_030452" /product="T28K15.11 protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00690.1" /inference="similar to AA sequence:TAIR:AT1G12150.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc9t10" CDS join(27107736..27108134,27108278..27109738) /locus_tag="TCM_030452" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="T28K15.11 protein, putative isoform 1" /protein_id="EOY29010.1" /db_xref="TAIR:AT1G12150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FWW5" /translation="MVHIAHGFAMYLNSRVFSFLNRYSSTSFMYVVVFHTISCIMQED NDHGNPTALAQVSFRGNSLINWLPKTKMVNIRRVNSERLPKSLGSPRAEVGEIDTRVP FQSVKAAVSLFGEVAVSRERRTPRKSRLSAENVIDKETQLLLAQKEINNIKQKLESDE STKAKADFDLESAKRTLQDLTSKLETITQSKRSAIEATEAVKEQARQLELQKSKNHQE SNARKMELEYAREQYMAVATELDAAKQELNEIRQDFDAALEAKLAAFQQAAEAQRCSK MHAERVSELSKEISGMKEAIQQVKLATQQVYQEQANIAEEKDALQKSYKKAKEETENK LISSRKEYDPELTKYLEEKLMETTAEVEALQEEMKKAHALEMDSVRVITGELNEATTT LQQVADEECSLRNLVSSLGLELEEVKRERQAEMDKEAKTVAEQNELREHNFRLQQLSS EIENARREEQEMKKSTEELKIEAETAKVAAEEVQQKLERALEQAEEAKAAEKKAVDEM QVLSAKEDIGNTESSGKIIISMEEFESLNRKVVESGDMADRQIADAMAELEAINARKS ETEKRLEASLKAMEEIKAATELAEKSATMAEAAQGVIEGELKRRRQQEQMVAP" mRNA join(27107822..27108134,27108278..27110462) /locus_tag="TCM_030452" /product="T28K15.11 protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00690.1" /inference="similar to AA sequence:TAIR:AT1G12150.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.27 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc8t9; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc9t10" CDS join(27107856..27108134,27108278..27109738) /locus_tag="TCM_030452" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="T28K15.11 protein, putative isoform 2" /protein_id="EOY29011.1" /db_xref="TAIR:AT1G12150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FWW5" /translation="MQEDNDHGNPTALAQVSFRGNSLINWLPKTKMVNIRRVNSERLP KSLGSPRAEVGEIDTRVPFQSVKAAVSLFGEVAVSRERRTPRKSRLSAENVIDKETQL LLAQKEINNIKQKLESDESTKAKADFDLESAKRTLQDLTSKLETITQSKRSAIEATEA VKEQARQLELQKSKNHQESNARKMELEYAREQYMAVATELDAAKQELNEIRQDFDAAL EAKLAAFQQAAEAQRCSKMHAERVSELSKEISGMKEAIQQVKLATQQVYQEQANIAEE KDALQKSYKKAKEETENKLISSRKEYDPELTKYLEEKLMETTAEVEALQEEMKKAHAL EMDSVRVITGELNEATTTLQQVADEECSLRNLVSSLGLELEEVKRERQAEMDKEAKTV AEQNELREHNFRLQQLSSEIENARREEQEMKKSTEELKIEAETAKVAAEEVQQKLERA LEQAEEAKAAEKKAVDEMQVLSAKEDIGNTESSGKIIISMEEFESLNRKVVESGDMAD RQIADAMAELEAINARKSETEKRLEASLKAMEEIKAATELAEKSATMAEAAQGVIEGE LKRRRQQEQMVAP" gene complement(27110009..27115483) /locus_tag="TCM_030453" /note="dbxref CacaoGD:Thecc1EG030453" mRNA complement(join(27110009..27110460,27111104..27111184, 27111262..27111363,27111690..27111785,27111862..27111921, 27112019..27112072,27112238..27112315,27112456..27112509, 27112670..27112753,27113508..27113536,27113643..27114036, 27115327..27115483)) /locus_tag="TCM_030453" /product="SEC14 cytosolic factor, putative" /inference="alignment:exonerate- protein:2:ricco:29966.m000226.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030606t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s00590.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02180t00001_C2" CDS complement(join(27110149..27110460,27111104..27111184, 27111262..27111363,27111690..27111785,27111862..27111921, 27112019..27112072,27112238..27112315,27112456..27112509, 27112670..27112753,27113508..27113536,27113643..27113697)) /locus_tag="TCM_030453" /note="paralog of Thecc1EG030606t1" /codon_start=1 /product="SEC14 cytosolic factor, putative" /protein_id="EOY29012.1" /db_xref="Phytozome:POPTR_0006s00590.1" /db_xref="TAIR:AT5G47730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SWQ7" /translation="MGIVSQEAIVQLQALMDRVDEPLKKTFENVHQGYRAETLARFLK AREWSVVKAHKMLVDSLLWRVQNDIDNILTKPIFPTELYRAVRDSQLIGMSGYSREGL PVFAIGVGLSTFDKASVHYYVQSHIQINEYRDRVILPSASKKHGRPITTCIKVLDMTG LKLSALTHIKLLTIISTIDDLNYPEKTNTYYIVNAPYIFSACWKVVKPLLQERTRKKI QVLPGCGRDELLKIMDLASMPHFCGKEGSGSSRHSENENCFSLDHPFHQQLYNYVKQQ SLVTEPAQPIKQGSFHVDLPEPAAEGTEIAKTLESELHKFENGNGLSRSISGIKIDDD " gene 27115781..27117657 /locus_tag="TCM_030454" /note="dbxref CacaoGD:Thecc1EG030454" mRNA join(27115781..27116248,27116714..27116832, 27116943..27117058,27117145..27117657) /locus_tag="TCM_030454" /product="Adenine nucleotide alpha hydrolases-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01002204001" /inference="similar to AA sequence:Phytozome:POPTR_0006s00580.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09499t00001" CDS join(27115906..27116248,27116714..27116832, 27116943..27117058,27117145..27117370) /locus_tag="TCM_030454" /codon_start=1 /product="Adenine nucleotide alpha hydrolases-like superfamily protein, putative" /protein_id="EOY29013.1" /db_xref="Phytozome:POPTR_0006s00580.1" /db_xref="TAIR:AT5G47740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HC19" /translation="MSTPWTETNVAAAQTCRFSSSASEIEEEEEEDGNFSSELFEINH GEGLASIKEEDASSLFSFDVNNAEDIVYVAVGKSESSIDALSWTLSHFVSTSSVLYLI HVFPEIHHIPSPLGMLPKSKVSPAQVENYMAQERGKRRELLQKFLNICSASKVKVDTM LIESDMVAKAILDLIPILNIRKLVVGTSNCSPRKLKSRRGFGIADQIFQNAPDTCEVK VVCEGKEVIISQMIGPPSPSAGNEDNFKALQKADHNNDSFSCMCFRPKF" gene complement(27117562..27121925) /locus_tag="TCM_030455" /note="dbxref CacaoGD:Thecc1EG030455" mRNA complement(join(27117562..27118957,27119660..27120761, 27121734..27121925)) /locus_tag="TCM_030455" /product="D6 protein kinase like 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s00570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030604t3" /inference="similar to AA sequence:Phytozome:POPTR_0016s00660.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9233t1" CDS complement(join(27118078..27118957,27119660..27120624)) /locus_tag="TCM_030455" /note="paralog of Thecc1EG030604t3" /codon_start=1 /product="D6 protein kinase like 2" /protein_id="EOY29014.1" /db_xref="Phytozome:POPTR_0016s00660.1" /db_xref="TAIR:AT5G47750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P15792" /translation="MASKSGAKISPKQQLKTSSVQSGEADEPKPLPSKVSKTNKSELV TPEHLLKLVETAPKKVVAEIYENKRSPILNQNGSVESLTTKFESSSSSPCVEQASKEV DSSINETRDSPSVSVDQEKKTSEYGSVKNSSVSAKVSDGTSTLAKTSGSAKISDRLDY VESGKSSMCRGSTSSDVSDESTCSSFSSSINKPHKANDLRWEAIQAVRARDGVLGLSR FRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKASLASRKKLLRAQTEREILQSLDH PFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLALEY LHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKTSSLESEPLRKNPVY CVQPACIEPSCIQPSCVAPTTCFSPRLFSSKSKKDRKPKNEIGNQVSPLPELIAEPTD ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLYGKTPFKGSGNRATLFNV VGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRC ATPPEIPKPVELERVPAPPASTSEKVAANVAAAYDQKGSDNYLEFDFF" gene 27126054..27130611 /locus_tag="TCM_030457" /note="dbxref CacaoGD:Thecc1EG030457" mRNA join(27126054..27126166,27126392..27126834, 27127182..27127279,27127381..27127953,27128103..27128361, 27128779..27128961,27129081..27130611) /locus_tag="TCM_030457" /product="Oligopeptide transporter 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030598t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00650.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete" CDS join(27126085..27126166,27126392..27126834, 27127182..27127279,27127381..27127953,27128103..27128361, 27128779..27128961,27129081..27129707) /locus_tag="TCM_030457" /note="paralog of Thecc1EG030598t1" /codon_start=1 /product="Oligopeptide transporter 5" /protein_id="EOY29015.1" /db_xref="Phytozome:POPTR_0016s00650.1" /db_xref="TAIR:AT4G26590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UAK4" /translation="MEHPDTEVITLSHQTKQIDNTEITEDTDDEVNDSPIEQVRLTVP IRDDPTLPCLTFRTWALGITSCVVLGFLNQFFQYRQNSLHISSVSAQILVLPVGKLMA AYLPRKSIRIPSTKWSFSLNPGPFNLKEHVLITIFANTSSINLYAVNIITLVKAFYHG EIHPLAAMLLAQSTQMLGYGWAGIFRKFLVDSPYMWWPNNLIQVSLFRALHNVEVRSK GGLTRLQFFLVVFISSFAYYIVPNYFFPSITALSFVCWVWKDSVTAQIIGAGRGGLGI GSFALDWSTVASFLQSPLATPAFAIINIMVGFVIVVYILLPIAYWSNSYEARRFPIIS SHVFTADGEKYDVSRVLNYTAFEFNQQGYDGYSKINLSVFFVYSYGLSFATLAATMSH VVFFDGRTIWQQAISAFQDKFSDVHYRLMKKTYEPVPQWWFYTLLTIVIGLAMLTCEG FGRQLQLPYWGVLLAIGLALIFTLPIGVIMATTNQQLGLNVITELIIGYIYSGKPLAN VVFKTYGYISTAQAILFLQDFKLGHYMKIPPKSMFLVQLVETVIASSVYFGTAWWLLT TVKHICDPSNLPEGSPWTCPGDDIFYNASIIWGVVGPLRMSGRLGLYSKMNYFFLIGI LAPFPVWVLSHMFPEQKWIKLINMPLIIGGSGALPAARVVNYWCWGVVGMFFNFFVYR RFKGWWARHNYILSAGLDSGVAFMAILCYFTLQMRSINGPSWWGAQLDDHCPLASCPT APGIEVEGCPVFQY" gene complement(27131035..27134424) /locus_tag="TCM_030458" /note="dbxref CacaoGD:Thecc1EG030458" mRNA complement(join(27131035..27131488,27131576..27131679, 27131761..27131860,27131937..27132034,27132694..27132746, 27132838..27132897,27133165..27133236,27133463..27133534, 27133625..27133884)) /locus_tag="TCM_030458" /product="2-phosphoglycolate phosphatase 2 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023152t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00580.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc1176t5; inference alignment:Newbler:10:TSA:cgbaL_g01685t00002" mRNA complement(join(27131048..27131488,27131576..27131679, 27131761..27132034,27132694..27132746,27132838..27132897, 27133165..27133236,27133463..27133534,27133625..27133717, 27133860..27133927,27134039..27134424)) /locus_tag="TCM_030458" /product="2-phosphoglycolate phosphatase 2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023152t1" /inference="similar to AA sequence:Phytozome:GSVIVT01003477001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:PASA:2:TSA:puevd3b029458t1a2; inference alignment:Newbler:10:TSA:cgbaL_g01685t00002" mRNA complement(join(27131048..27131488,27131576..27131679, 27131761..27131860,27131937..27132034,27132694..27132746, 27132838..27132897,27133165..27133236,27133463..27133534, 27133625..27133717,27133860..27133927,27134039..27134176)) /locus_tag="TCM_030458" /product="2-phosphoglycolate phosphatase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023152t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00580.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9175t1; alternateUTRof:Thecc1EG030458t1; inference alignment:Newbler:10:TSA:cgbaL_g01685t00002" mRNA complement(join(27131136..27131488,27131576..27131679, 27131761..27131860,27131937..27132034,27132694..27132746, 27132838..27132897,27133165..27133236,27133463..27133534, 27133625..27133717,27133860..27133927,27134039..27134424)) /locus_tag="TCM_030458" /product="2-phosphoglycolate phosphatase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023152t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00580.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01685t00002" CDS complement(join(27131388..27131488,27131576..27131679, 27131761..27131860,27131937..27132034,27132694..27132746, 27132838..27132897,27133165..27133236,27133463..27133534, 27133625..27133717,27133860..27133927,27134039..27134153)) /locus_tag="TCM_030458" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG023152t1" /codon_start=1 /product="2-phosphoglycolate phosphatase 2 isoform 1" /protein_id="EOY29016.1" /db_xref="Phytozome:POPTR_0016s00580.1" /db_xref="TAIR:AT5G47760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTH1" /translation="MEAIEGESPSRGSGAELLSGASVRALLDSVDAFLFDCDGVIWKG DKLIDGVPQTLEKLRSKGKKLVFVTNNSSKSRSQYADKFRSLGLSVTQDEIFSSSFAA AMYLKVNQFPPHKKVYVIGGEGILQELQLAGFTAVGGPEDGEKKVQLKSSGFFEHDKN VGAVVVGIDPNINYYKLQYGTLCIRENPGCLFIATNRDSVGHMTDLQEWPGAGCMVGA ICGSTEREPIVVGKPSTFMMDFLLQKFHISTSRMCMVGDRLDTDILFGQNAGCKTLLV LSGVTTQSELDDSSNSIQPDYYTGKVSDILELLGE" CDS complement(join(27131388..27131488,27131576..27131679, 27131761..27131860,27131937..27132034,27132694..27132746, 27132838..27132897,27133165..27133236,27133463..27133534, 27133625..27133717,27133860..27133927,27134039..27134153)) /locus_tag="TCM_030458" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG023152t1" /codon_start=1 /product="2-phosphoglycolate phosphatase 2 isoform 1" /protein_id="EOY29017.1" /db_xref="Phytozome:POPTR_0016s00580.1" /db_xref="TAIR:AT5G47760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTH1" /translation="MEAIEGESPSRGSGAELLSGASVRALLDSVDAFLFDCDGVIWKG DKLIDGVPQTLEKLRSKGKKLVFVTNNSSKSRSQYADKFRSLGLSVTQDEIFSSSFAA AMYLKVNQFPPHKKVYVIGGEGILQELQLAGFTAVGGPEDGEKKVQLKSSGFFEHDKN VGAVVVGIDPNINYYKLQYGTLCIRENPGCLFIATNRDSVGHMTDLQEWPGAGCMVGA ICGSTEREPIVVGKPSTFMMDFLLQKFHISTSRMCMVGDRLDTDILFGQNAGCKTLLV LSGVTTQSELDDSSNSIQPDYYTGKVSDILELLGE" CDS complement(join(27131388..27131488,27131576..27131679, 27131761..27131860,27131937..27132034,27132694..27132746, 27132838..27132897,27133165..27133236,27133463..27133501)) /locus_tag="TCM_030458" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG023152t1" /codon_start=1 /product="2-phosphoglycolate phosphatase 2 isoform 4" /protein_id="EOY29019.1" /db_xref="Phytozome:POPTR_0016s00580.1" /db_xref="TAIR:AT5G47760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTH1" /translation="MYLKVNQFPPHKKVYVIGGEGILQELQLAGFTAVGGPEDGEKKV QLKSSGFFEHDKNVGAVVVGIDPNINYYKLQYGTLCIRENPGCLFIATNRDSVGHMTD LQEWPGAGCMVGAICGSTEREPIVVGKPSTFMMDFLLQKFHISTSRMCMVGDRLDTDI LFGQNAGCKTLLVLSGVTTQSELDDSSNSIQPDYYTGKVSDILELLGE" CDS complement(join(27131899..27132034,27132694..27132746, 27132838..27132897,27133165..27133236,27133463..27133534, 27133625..27133717,27133860..27133927,27134039..27134153)) /locus_tag="TCM_030458" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG023152t1" /codon_start=1 /product="2-phosphoglycolate phosphatase 2 isoform 3" /protein_id="EOY29018.1" /db_xref="Phytozome:GSVIVT01003477001" /db_xref="TAIR:AT5G47760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTH1" /translation="MEAIEGESPSRGSGAELLSGASVRALLDSVDAFLFDCDGVIWKG DKLIDGVPQTLEKLRSKGKKLVFVTNNSSKSRSQYADKFRSLGLSVTQDEIFSSSFAA AMYLKVNQFPPHKKVYVIGGEGILQELQLAGFTAVGGPEDGEKKVQLKSSGFFEHDKN VGAVVVGIDPNINYYKLQYGTLCIRENPGCLFIATNRDSVGHMTDLQEWPGKEIKSHL QSLL" gene 27136886..27140791 /locus_tag="TCM_030459" /note="dbxref CacaoGD:Thecc1EG030459" mRNA join(27136886..27137139,27137483..27137507, 27137620..27137735,27137863..27137949,27138051..27138167, 27138245..27138333,27138622..27138673,27139115..27139210, 27139548..27139592,27139702..27139791,27139877..27139948, 27140090..27140243,27140469..27140791) /locus_tag="TCM_030459" /product="Farnesyl diphosphate synthase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s00530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030583t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s00530.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00987t00001; inference alignment:Newbler:10:TSA:cgbaL_g00987t00001" mRNA join(<27136893..27137139,27137483..27137507, 27137620..27137735,27137863..27137949,27138051..27138167, 27138245..27138333,27138622..27138673,27139115..27139210, 27139548..27139587,27139702..27139730) /locus_tag="TCM_030459" /product="Farnesyl diphosphate synthase 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s00530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030583t1" /inference="similar to AA sequence:Phytozome:Glyma15g12780.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc369t8; inference alignment:Newbler:10:TSA:cgbaL_g00987t00001" CDS join(<27136894..27137139,27137483..27137507, 27137620..27137735,27137863..27137949,27138051..27138167, 27138245..27138333,27138622..27138673,27139115..27139210, 27139548..27139587,27139702..27139712) /locus_tag="TCM_030459" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG030583t1" /codon_start=1 /product="Farnesyl diphosphate synthase 1 isoform 3" /protein_id="EOY29022.1" /db_xref="Phytozome:Glyma15g12780.1" /db_xref="TAIR:AT5G47770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q09152" /translation="KPSPFYFFIFFTNKTEQFGNLLFPAFTVPEERRGAFQSQKNTLA LMADRRSAFLQVYYKLKSELLEDPSFEFTDVSRQWVDRMLDYNVPGGKLNRGLSVIDS YRLLKEGKELTENEIFLASALGWCIEWLQAYFLVLDDIMDNSHTRRGHPCWFRVPQVG LIAVNDGILLRNHICRILKNHFREKPYYVDLLDLFNEVEFQTASGQMIDLITTLEGEK DLSKYSLSQHRRIVQYKTAYYSFYLPVACALVMSGENLDNHIDVKNILVDMGIYFQVQ DDYLDCFGDPETIDWN" mRNA join(<27136906..27137139,27137483..27137507, 27137620..27137735,27137863..27137949,27138051..27138167, 27138245..27138333,27138622..27138673,27139115..27139210, 27139548..27139592,27139702..27139791,27139880..>27139946) /locus_tag="TCM_030459" /product="Farnesyl diphosphate synthase 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s00530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030583t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s00530.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc310t11; inference alignment:Newbler:10:TSA:cgbaL_g00987t00001" CDS join(<27136906..27137139,27137483..27137507, 27137620..27137735,27137863..27137949,27138051..27138167, 27138245..27138333,27138622..27138673,27139115..27139210, 27139548..27139592,27139702..27139791,27139880..>27139945) /locus_tag="TCM_030459" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030583t1" /codon_start=1 /product="Farnesyl diphosphate synthase 1 isoform 2" /protein_id="EOY29021.1" /db_xref="Phytozome:POPTR_0006s00530.1" /db_xref="TAIR:AT5G47770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q09152" /translation="FYFFIFFTNKTEQFGNLLFPAFTVPEERRGAFQSQKNTLALMAD RRSAFLQVYYKLKSELLEDPSFEFTDVSRQWVDRMLDYNVPGGKLNRGLSVIDSYRLL KEGKELTENEIFLASALGWCIEWLQAYFLVLDDIMDNSHTRRGHPCWFRVPQVGLIAV NDGILLRNHICRILKNHFREKPYYVDLLDLFNEVEFQTASGQMIDLITTLEGEKDLSK YSLSQHRRIVQYKTAYYSFYLPVACALVMSGENLDNHIDVKNILVDMGIYFQVQDDYL DCFGDPETIGKIGTDIEDFKCSWLVVKALEICNEEQKKVLHNYGKLDPVNVANVKALY NELNL" CDS join(27137029..27137139,27137483..27137507, 27137620..27137735,27137863..27137949,27138051..27138167, 27138245..27138333,27138622..27138673,27139115..27139210, 27139548..27139592,27139702..27139791,27139877..27139948, 27140090..27140218) /locus_tag="TCM_030459" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030583t1" /codon_start=1 /product="Farnesyl diphosphate synthase 1 isoform 1" /protein_id="EOY29020.1" /db_xref="Phytozome:POPTR_0006s00530.1" /db_xref="TAIR:AT5G47770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q09152" /translation="MADRRSAFLQVYYKLKSELLEDPSFEFTDVSRQWVDRMLDYNVP GGKLNRGLSVIDSYRLLKEGKELTENEIFLASALGWCIEWLQAYFLVLDDIMDNSHTR RGHPCWFRVPQVGLIAVNDGILLRNHICRILKNHFREKPYYVDLLDLFNEVEFQTASG QMIDLITTLEGEKDLSKYSLSQHRRIVQYKTAYYSFYLPVACALVMSGENLDNHIDVK NILVDMGIYFQVQDDYLDCFGDPETIGKIGTDIEDFKCSWLVVKALEICNEEQKKVLH ENYGKLDPVNVANVKALYNELNLKGVFEEYESKSYEKLITAIDVHPSKAVQSVLKSFL AKIYKREK" gene complement(27140560..27141311) /locus_tag="TCM_030460" /note="dbxref CacaoGD:Thecc1EG030460" mRNA complement(27140560..27141311) /locus_tag="TCM_030460" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.94 coverage" CDS complement(27140608..27140823) /locus_tag="TCM_030460" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY29023.1" /translation="MTSKLPGYTCHPVPRPFFLFHAPVFLCVHVSYIPFHRIAMANAD SKVHYTMRLQPTPRIEIPSPILGLFHK" gene 27141424..27147830 /locus_tag="TCM_030461" /note="dbxref CacaoGD:Thecc1EG030461" mRNA join(27141424..27141605,27141764..27142459, 27142897..27144144,27144258..27144440,27144629..27144912, 27145016..27145132,27145217..27145479,27146102..27146270, 27146432..27146704,27146835..27147830) /locus_tag="TCM_030461" /product="C2 calcium/lipid-binding and GRAM domain containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012222t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00550.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc365t17" CDS join(27142111..27142459,27142897..27144144, 27144258..27144440,27144629..27144912,27145016..27145132, 27145217..27145479,27146102..27146270,27146432..27146704, 27146835..27147026) /locus_tag="TCM_030461" /note="paralog of Thecc1EG012222t1" /codon_start=1 /product="C2 calcium/lipid-binding and GRAM domain containing protein" /protein_id="EOY29024.1" /db_xref="Phytozome:POPTR_0016s00550.1" /db_xref="TAIR:AT1G03370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3U8" /translation="MKLIVGVIEARNMPPMDINGFSDPYVKLQLGKQRSRTKVVKKTL NPTWGEEFSFKVEDLNEELLISVLDEDKYFNDDFVGQLKLPVSRIFDAHNKSLGTAWY SIHPRSKKSKNKDCGEILLNIYFSQNNSFMDLASHGDNASSLKKHADMTIEDLSRSFS GSSNSPSPVRQEDNVSSKEDKSGAQKSLAGRIAQMFNKNMDTAPTTSAKSTDLMEIPE ISRADISDDNADDQSSSVSFEEAMKALESRDQGSEIPINLPGGVLLDQLYVIAPTELN FLLFSPDSSFPRSLAEVQGSTDPQFGPWKFENGGECLKRVYSYIRAPTKLIKAVKATE EQTYIKADGKDFAVLAGVSTPDVMYGSTFRTEVLYCITPGPELPSGEQSSHLVISWRM NFLQSTMMKGMIENGARQGLKESFEQFATLLAQTIKPVDSKDIGLNKEHLLGSLQAEP QSDWKLAVQYFANFTLASTVFMSIYVIVHIWLAAPSAIQGLEFVGLDLPDSIGEFIVC GVLVLQGERVLQLFSRFMQARAQKGSDHGVKAQGNGWLLTVALLEGSNLAAVDSSGFC DPYVVFTCNGKTRTSSIKFQKSGPQWNEIFEFDAMDEPPSVLDVEVYDFDGPFDEATS LGHAEINFVKSNISDLADVWVPLQGKLAQACQSKLHLRIFLDNTRGGNVVKEYLSKME KEVGKKINVRSPQTNSAFQKLFGLPPEEFLINDFTCHLKRKMPLQGRLFLSARIIGFH ANLFGHKTKFFFLWEDIEDIQVLTPTLASMGSPIIVTTLRLGRGMDARHGAKTQDEEG RLKFHFHSFVSFNVAHRTIMALWKARSLSPEQKVQIVEEDSEAKSLQTEESGSFLGLE DVSMSEVYSSALPVPTSFFMELFNGGELDRKAMERAGCLNYSCSPWESERADVYERQI YYRFDKRVSRYRGEVTSTQQKSPLSDKNGWLIEEVMTLHGVPLGDYFNLHLRYQIEDL PSRSKGCQVRVFFGIAWLKSTRHQKRIAKNILLNLEDRLKVTLGVIEKEYISR" gene 27148070..27150900 /locus_tag="TCM_030462" /note="dbxref CacaoGD:Thecc1EG030462" mRNA join(27148070..27148177,27148600..27149158, 27149508..27150565) /locus_tag="TCM_030462" /product="SMAD/FHA domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s00500.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00540.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06057t00001; inference alignment:Newbler:10:TSA:cgbaB_g06057t00001" mRNA join(27148148..27148177,27148577..27149158, 27149508..27150900) /locus_tag="TCM_030462" /product="SMAD/FHA domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s00500.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00540.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc585t2; alternateUTRof:Thecc1EG030462t1; inference alignment:Newbler:10:TSA:cgbaB_g06057t00001" mRNA join(27148148..27148177,27148592..27149158, 27149508..27150900) /locus_tag="TCM_030462" /product="SMAD/FHA domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s00500.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00540.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc585t1; alternateUTRof:Thecc1EG030462t1; inference alignment:Newbler:10:TSA:cgbaB_g06057t00001" CDS join(27148749..27149158,27149508..27150342) /locus_tag="TCM_030462" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="SMAD/FHA domain-containing protein isoform 1" /protein_id="EOY29025.1" /db_xref="Phytozome:POPTR_0016s00540.1" /db_xref="TAIR:AT5G47790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3U9" /translation="MYGRGGLDRFKKAQSLEPFSVSLNSAPKTTPKAVQAQQHSHSQN AVAQPQQEEQTQPQPATQLGGGQSTWQPPDWAIEPRPGVYYLQVLKEGQVLDHINLDR RRHIFGRQHHTCDFVLDHQSVSRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKDT PVELELGQSLRFAASTRTYILRKNNAALFPRPPPPTEINLPPPPDPSDEEAVVAYNTL INSYGLSKSDLLPKSNVSGSSLSEREGSTELGRASKRMKKLKVTFRDQAGGELVEVVG ISDGADVETEPGPLGVKEGSLVGKYESLVQTTVIPKGKEASSVKEDDGFQKGVTDKLQ EVLNKVKNAPKGGIYDDLYGESLSDKVGSSWAYSSVSCAGRQASPTQDDTTGKAIGVS SGNPRSKSASYDDDSEDDLFGD" CDS join(27148749..27149158,27149508..27150342) /locus_tag="TCM_030462" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="SMAD/FHA domain-containing protein isoform 1" /protein_id="EOY29026.1" /db_xref="Phytozome:POPTR_0016s00540.1" /db_xref="TAIR:AT5G47790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3U9" /translation="MYGRGGLDRFKKAQSLEPFSVSLNSAPKTTPKAVQAQQHSHSQN AVAQPQQEEQTQPQPATQLGGGQSTWQPPDWAIEPRPGVYYLQVLKEGQVLDHINLDR RRHIFGRQHHTCDFVLDHQSVSRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKDT PVELELGQSLRFAASTRTYILRKNNAALFPRPPPPTEINLPPPPDPSDEEAVVAYNTL INSYGLSKSDLLPKSNVSGSSLSEREGSTELGRASKRMKKLKVTFRDQAGGELVEVVG ISDGADVETEPGPLGVKEGSLVGKYESLVQTTVIPKGKEASSVKEDDGFQKGVTDKLQ EVLNKVKNAPKGGIYDDLYGESLSDKVGSSWAYSSVSCAGRQASPTQDDTTGKAIGVS SGNPRSKSASYDDDSEDDLFGD" CDS join(27148749..27149158,27149508..27150342) /locus_tag="TCM_030462" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="SMAD/FHA domain-containing protein isoform 1" /protein_id="EOY29027.1" /db_xref="Phytozome:POPTR_0016s00540.1" /db_xref="TAIR:AT5G47790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3U9" /translation="MYGRGGLDRFKKAQSLEPFSVSLNSAPKTTPKAVQAQQHSHSQN AVAQPQQEEQTQPQPATQLGGGQSTWQPPDWAIEPRPGVYYLQVLKEGQVLDHINLDR RRHIFGRQHHTCDFVLDHQSVSRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKDT PVELELGQSLRFAASTRTYILRKNNAALFPRPPPPTEINLPPPPDPSDEEAVVAYNTL INSYGLSKSDLLPKSNVSGSSLSEREGSTELGRASKRMKKLKVTFRDQAGGELVEVVG ISDGADVETEPGPLGVKEGSLVGKYESLVQTTVIPKGKEASSVKEDDGFQKGVTDKLQ EVLNKVKNAPKGGIYDDLYGESLSDKVGSSWAYSSVSCAGRQASPTQDDTTGKAIGVS SGNPRSKSASYDDDSEDDLFGD" gene complement(27151051..27152411) /locus_tag="TCM_030463" /note="dbxref CacaoGD:Thecc1EG030463" mRNA complement(join(27151051..27152007,27152212..27152411)) /locus_tag="TCM_030463" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.23 coverage" mobile_element complement(27151572..27151643) /note="source:CACAO_M_E11054_F12_scaffold_2 8750 8805" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(27151805..27152007,27152212..27152392)) /locus_tag="TCM_030463" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY29028.1" /translation="MIEFEKKHATQVGSGLRLKRDLLRGACPPPHPQLKGRDGGTIME DPLYKAHHGTPHYVYVGQYLQLQCPGVCICRRVCIVIPTCALAGAPTWYNVKQMGRGE ERVRVRHSHSSPILSTIPSRCVLRN" gene 27152635..27160220 /locus_tag="TCM_030464" /note="dbxref CacaoGD:Thecc1EG030464" mRNA join(27152635..27153105,27155848..27155946, 27156916..27157059,27157147..27157216,27157687..27158085, 27158207..27158947,27159251..27159977) /locus_tag="TCM_030464" /product="Root phototropism protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29836.m000584" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010545t1" /inference="similar to AA sequence:ricco:29836.m000584" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9186t2" mobile_element 27152956..27153022 /note="source:CACAO_M_S_E101721_F266_scaffold_9 1437 1500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27152971..27153035 /note="source:scaffold_2_CACTA_0279 6970 7021" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27152986..27153040 /note="source:INTACT495_F229_scaffold_2-int 2854 2907" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27152993..27153069) /note="source:INTACT697_F302_scaffold_2-int 12577 12653" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA join(27153060..27153105,27155848..27155946, 27156916..27157059,27157147..27157216,27157681..27158085, 27158207..27158947,27159251..27160220) /locus_tag="TCM_030464" /product="Root phototropism protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29836.m000584" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010545t1" /inference="similar to AA sequence:ricco:29836.m000584" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1369t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9186t2" mRNA join(27153077..27153105,27155848..27155946, 27156916..27157059,27157144..27157216,27157687..27158085, 27158207..27158947,27159251..27160048) /locus_tag="TCM_030464" /product="Root phototropism protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29836.m000584" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010545t1" /inference="similar to AA sequence:ricco:29836.m000584" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9186t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9186t2" mobile_element 27154679..27154732 /note="source:CACAO_M_E50672_F328_scaffold_7 1043 1095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27154809..27155049 /note="source:scaffold_3_CACTA_0397 14 263" /mobile_element_type="transposon:TIR/CACTA" mRNA join(27156411..27156769,27156916..27157059, 27157147..27157216,27157687..27158085,27158207..27158947, 27159251..27160220) /locus_tag="TCM_030464" /product="Root phototropism protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29836.m000584" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010545t1" /inference="similar to AA sequence:ricco:29836.m000584" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc3272t2; alternateUTRof:Thecc1EG030464t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9186t2" CDS join(27157001..27157059,27157144..27157216, 27157687..27158085,27158207..27158947,27159251..27159721) /locus_tag="TCM_030464" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29836.m000584; paralog of Thecc1EG010545t1" /codon_start=1 /product="Root phototropism protein, putative isoform 3" /protein_id="EOY29031.1" /db_xref="TAIR:AT5G47800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGC1" /translation="MKFMKIGTKPDTFYTEEATSRTVISDIPSDLTIRINNICYLLHK FPLVPTCGLLQRLCSDSEDSDIVIIDLHDIPGGEDAFELCAKFCYGITISLSAHNFVP AFCAAKFLRMTESIEKGNFVLKLEAFFNSCILEGWKDSIVTLQTTIKLPEWSENLGII RRCIDSIVEKILTPPAKVSWSYTYTRPGYVKKQHQSVPKDWWTEDISDLDIDLFRCII TAVRSTYMLPPQLVGEALHVYACRWLPDTTKSRPPQSSGSLTEESMKKSRRILEFIVS MIPADRGSVSVGFLLRLLSIANYLGASPVTKTELIRKAGLQFEEATVGDMLLPSQLSS DQHYYDIDLVSAVLESYLVLWRRQSPASAENSHLLRSVRKIGKLIDSYLQVVARDVNM PISKLVYLAEALPDSARGDHDGLYKAINIYLKEHPDLSKAEKKSLCRMLDCQKLSPEI RAHAVKNERLPLRTVVQVLFFEQESGSRATGHKPELISKARQTQATEEEGDKPQQEAR RRNTVPESSEREHHEKMKSLEGKGVRGNIGEAESEKGKERRGEANSASKVDPKKIVQR RSRSDQGHDKGRER" CDS join(27157001..27157059,27157147..27157216, 27157681..27158085,27158207..27158947,27159251..27159721) /locus_tag="TCM_030464" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29836.m000584; paralog of Thecc1EG010545t1" /codon_start=1 /product="Root phototropism protein, putative isoform 2" /protein_id="EOY29030.1" /db_xref="TAIR:AT5G47800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGC1" /translation="MKFMKIGTKPDTFYTEEATRTVISDIPSDLTIRINNICYLLHKL QFPLVPTCGLLQRLCSDSEDSDIVIIDLHDIPGGEDAFELCAKFCYGITISLSAHNFV PAFCAAKFLRMTESIEKGNFVLKLEAFFNSCILEGWKDSIVTLQTTIKLPEWSENLGI IRRCIDSIVEKILTPPAKVSWSYTYTRPGYVKKQHQSVPKDWWTEDISDLDIDLFRCI ITAVRSTYMLPPQLVGEALHVYACRWLPDTTKSRPPQSSGSLTEESMKKSRRILEFIV SMIPADRGSVSVGFLLRLLSIANYLGASPVTKTELIRKAGLQFEEATVGDMLLPSQLS SDQHYYDIDLVSAVLESYLVLWRRQSPASAENSHLLRSVRKIGKLIDSYLQVVARDVN MPISKLVYLAEALPDSARGDHDGLYKAINIYLKEHPDLSKAEKKSLCRMLDCQKLSPE IRAHAVKNERLPLRTVVQVLFFEQESGSRATGHKPELISKARQTQATEEEGDKPQQEA RRRNTVPESSEREHHEKMKSLEGKGVRGNIGEAESEKGKERRGEANSASKVDPKKIVQ RRSRSDQGHDKGRER" CDS join(27157001..27157059,27157147..27157216, 27157687..27158085,27158207..27158947,27159251..27159721) /locus_tag="TCM_030464" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29836.m000584; paralog of Thecc1EG010545t1" /codon_start=1 /product="Root phototropism protein, putative isoform 1" /protein_id="EOY29029.1" /db_xref="TAIR:AT5G47800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGC1" /translation="MKFMKIGTKPDTFYTEEATRTVISDIPSDLTIRINNICYLLHKF PLVPTCGLLQRLCSDSEDSDIVIIDLHDIPGGEDAFELCAKFCYGITISLSAHNFVPA FCAAKFLRMTESIEKGNFVLKLEAFFNSCILEGWKDSIVTLQTTIKLPEWSENLGIIR RCIDSIVEKILTPPAKVSWSYTYTRPGYVKKQHQSVPKDWWTEDISDLDIDLFRCIIT AVRSTYMLPPQLVGEALHVYACRWLPDTTKSRPPQSSGSLTEESMKKSRRILEFIVSM IPADRGSVSVGFLLRLLSIANYLGASPVTKTELIRKAGLQFEEATVGDMLLPSQLSSD QHYYDIDLVSAVLESYLVLWRRQSPASAENSHLLRSVRKIGKLIDSYLQVVARDVNMP ISKLVYLAEALPDSARGDHDGLYKAINIYLKEHPDLSKAEKKSLCRMLDCQKLSPEIR AHAVKNERLPLRTVVQVLFFEQESGSRATGHKPELISKARQTQATEEEGDKPQQEARR RNTVPESSEREHHEKMKSLEGKGVRGNIGEAESEKGKERRGEANSASKVDPKKIVQRR SRSDQGHDKGRER" CDS join(27157001..27157059,27157147..27157216, 27157687..27158085,27158207..27158947,27159251..27159721) /locus_tag="TCM_030464" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29836.m000584; paralog of Thecc1EG010545t1" /codon_start=1 /product="Root phototropism protein, putative isoform 1" /protein_id="EOY29032.1" /db_xref="TAIR:AT5G47800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGC1" /translation="MKFMKIGTKPDTFYTEEATRTVISDIPSDLTIRINNICYLLHKF PLVPTCGLLQRLCSDSEDSDIVIIDLHDIPGGEDAFELCAKFCYGITISLSAHNFVPA FCAAKFLRMTESIEKGNFVLKLEAFFNSCILEGWKDSIVTLQTTIKLPEWSENLGIIR RCIDSIVEKILTPPAKVSWSYTYTRPGYVKKQHQSVPKDWWTEDISDLDIDLFRCIIT AVRSTYMLPPQLVGEALHVYACRWLPDTTKSRPPQSSGSLTEESMKKSRRILEFIVSM IPADRGSVSVGFLLRLLSIANYLGASPVTKTELIRKAGLQFEEATVGDMLLPSQLSSD QHYYDIDLVSAVLESYLVLWRRQSPASAENSHLLRSVRKIGKLIDSYLQVVARDVNMP ISKLVYLAEALPDSARGDHDGLYKAINIYLKEHPDLSKAEKKSLCRMLDCQKLSPEIR AHAVKNERLPLRTVVQVLFFEQESGSRATGHKPELISKARQTQATEEEGDKPQQEARR RNTVPESSEREHHEKMKSLEGKGVRGNIGEAESEKGKERRGEANSASKVDPKKIVQRR SRSDQGHDKGRER" gene 27160570..27165657 /locus_tag="TCM_030465" /note="dbxref CacaoGD:Thecc1EG030465" mRNA join(27160570..27160861,27162524..27162678, 27162949..27163031,27163216..27163275,27163439..27163547, 27163843..27163895,27165073..27165185,27165345..27165657) /locus_tag="TCM_030465" /product="Calcineurin B-like protein 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g00830.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030580t3" /inference="similar to AA sequence:Phytozome:POPTR_0016s00520.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b029465t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g10714t00001" mRNA join(27160570..27160861,27162524..27162678, 27162949..27163031,27163216..27163275,27163439..27163547, 27163843..27163895,27164330..27164410,27165073..27165185, 27165345..27165634) /locus_tag="TCM_030465" /product="Calcineurin B-like protein 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g00830.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030580t3" /inference="similar to AA sequence:Phytozome:Glyma17g00830.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10714t00001" CDS join(27162555..27162678,27162949..27163031, 27163216..27163275,27163439..27163547,27163843..27163895, 27164330..27164410,27165073..27165185,27165345..27165402) /locus_tag="TCM_030465" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030580t3" /codon_start=1 /product="Calcineurin B-like protein 2 isoform 1" /protein_id="EOY29033.1" /db_xref="Phytozome:Glyma17g00830.1" /db_xref="TAIR:AT5G55990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3HRP5" /translation="MVQCLEGLKHLCAAVINCCDADLYKQPKGLEDPEALARETVFSV SEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGIL DFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLS DDVIESIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQYLKDITTTFPSFV FHSQVDDT" CDS join(27162555..27162678,27162949..27163031, 27163216..27163275,27163439..27163547,27163843..27163895, 27165073..27165185,27165345..27165402) /locus_tag="TCM_030465" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030580t3" /codon_start=1 /product="Calcineurin B-like protein 2 isoform 2" /protein_id="EOY29034.1" /db_xref="Phytozome:POPTR_0016s00520.1" /db_xref="TAIR:AT5G55990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3HRP5" /translation="MVQCLEGLKHLCAAVINCCDADLYKQPKGLEDPEALARETVFSV SEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGIL DFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQETFEEADTKHDGKIDKEE WRSLVLRHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDT" gene 27165850..27169098 /locus_tag="TCM_030466" /note="dbxref CacaoGD:Thecc1EG030466" mRNA join(27165850..27166037,27166136..27166248, 27166722..27166781,27166877..27166948,27167068..27167166, 27167951..27168062,27168134..27168211,27168325..27168358, 27168432..27168500,27168631..27168725,27168819..27168846) /locus_tag="TCM_030466" /product="DNA-directed RNA polymerase II subunit rpb4, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29836.m000577" /inference="similar to AA sequence:Phytozome:GSVIVT01003467001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc847t8_C2; alternateUTRof:Thecc1EG030466t1; inference alignment:Newbler:10:TSA:cgbaL_g03389t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc972t14" mRNA join(27165850..27166037,27166136..27166248, 27166728..27166781,27166877..27166948,27167068..27167166, 27167951..27168062,27168134..27168211,27168325..27168358, 27168432..27168500,27168631..>27168658) /locus_tag="TCM_030466" /product="DNA-directed RNA polymerase II subunit rpb4, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29836.m000577" /inference="similar to AA sequence:Phytozome:GSVIVT01003467001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc847t3_C2; inference alignment:Newbler:10:TSA:cgbaL_g03389t00001; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc972t14" mRNA join(27165850..27166037,27166136..27166248, 27166722..27166781,27166877..27166948,27167068..27167166, 27167951..27168062,27168134..27168211,27168325..>27168353) /locus_tag="TCM_030466" /product="DNA-directed RNA polymerase II subunit rpb4, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:29836.m000577" /inference="similar to AA sequence:Phytozome:GSVIVT01003467001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc847t2_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc857t13_C2; inference alignment:Newbler:10:TSA:cgbaL_g03389t00001" mRNA join(27165962..27166037,27166136..27166248, 27166722..27166781,27166877..27166948,27167068..27167166, 27167951..27168062,27168134..27168211,27168325..27168358, 27168432..27168500,27168631..27168725,27168811..27169098) /locus_tag="TCM_030466" /product="DNA-directed RNA polymerase II subunit rpb4, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29836.m000577" /inference="similar to AA sequence:Phytozome:GSVIVT01003467001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03389t00001; inference alignment:Newbler:10:TSA:cgbaL_g03389t00001" CDS join(27166152..27166248,27166722..27166781, 27166877..27166948,27167068..27167166,27167951..27168062, 27168134..27168211,27168325..27168358,27168432..27168500, 27168631..27168705) /locus_tag="TCM_030466" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNA-directed RNA polymerase II subunit rpb4, putative isoform 1" /protein_id="EOY29035.1" /db_xref="Phytozome:GSVIVT01003467001" /db_xref="TAIR:AT4G15950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T5E7" /translation="MSEKGGKGFSLPTKTTPKSALKSTPASATARHGKDDNSAKSKRG RKVQFGMEGLPNLGFNFSSPKSDGKFAIPVGKGDWAKGGKGEKVVNGGKAPVAKEAKS LELRVEQELPENVKCLMDCEAANILEGIQEQMVMLSQDSTIKLPESFHLGLQYAKTRS YYTNPQSVRRVLEALSKYGVSYSEICVIANTCPETVDEVFALVRSLEAKKSRLSEPLK DVLDELGKLKKST" CDS join(27166152..27166248,27166722..27166781, 27166877..27166948,27167068..27167166,27167951..27168062, 27168134..27168211,27168325..27168358,27168432..27168500, 27168631..27168705) /locus_tag="TCM_030466" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA-directed RNA polymerase II subunit rpb4, putative isoform 1" /protein_id="EOY29036.1" /db_xref="Phytozome:GSVIVT01003467001" /db_xref="TAIR:AT4G15950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T5E7" /translation="MSEKGGKGFSLPTKTTPKSALKSTPASATARHGKDDNSAKSKRG RKVQFGMEGLPNLGFNFSSPKSDGKFAIPVGKGDWAKGGKGEKVVNGGKAPVAKEAKS LELRVEQELPENVKCLMDCEAANILEGIQEQMVMLSQDSTIKLPESFHLGLQYAKTRS YYTNPQSVRRVLEALSKYGVSYSEICVIANTCPETVDEVFALVRSLEAKKSRLSEPLK DVLDELGKLKKST" CDS join(27166152..27166248,27166728..27166781, 27166877..27166948,27167068..27167166,27167951..27168062, 27168134..27168211,27168325..27168358,27168432..27168500, 27168631..>27168657) /locus_tag="TCM_030466" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="DNA-directed RNA polymerase II subunit rpb4, putative isoform 3" /protein_id="EOY29037.1" /db_xref="Phytozome:GSVIVT01003467001" /db_xref="TAIR:AT4G15950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T5E7" /translation="MSEKGGKGFSLPTKTTPKSALKSTPASATARHDDNSAKSKRGRK VQFGMEGLPNLGFNFSSPKSDGKFAIPVGKGDWAKGGKGEKVVNGGKAPVAKEAKSLE LRVEQELPENVKCLMDCEAANILEGIQEQMVMLSQDSTIKLPESFHLGLQYAKTRSYY TNPQSVRRVLEALSKYGVSYSEICVIANTCPETVDEVFALVRSLEAKKSRLSEP" CDS join(27166152..27166248,27166722..27166781, 27166877..27166948,27167068..27167166,27167951..27168062, 27168134..27168211,27168325..>27168352) /locus_tag="TCM_030466" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="DNA-directed RNA polymerase II subunit rpb4, putative isoform 4" /protein_id="EOY29038.1" /db_xref="Phytozome:GSVIVT01003467001" /db_xref="TAIR:AT4G15950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T5E7" /translation="MSEKGGKGFSLPTKTTPKSALKSTPASATARHGKDDNSAKSKRG RKVQFGMEGLPNLGFNFSSPKSDGKFAIPVGKGDWAKGGKGEKVVNGGKAPVAKEAKS LELRVEQELPENVKCLMDCEAANILEGIQEQMVMLSQDSTIKLPESFHLGLQYAKTRS YYTNPQSVRRVLEALSKYGVSY" gene complement(27169107..27172821) /locus_tag="TCM_030467" /note="dbxref CacaoGD:Thecc1EG030467" mRNA complement(join(27169107..27170260,27171130..27171835, 27172655..27172821)) /locus_tag="TCM_030467" /product="Phosphofructokinase 2" /inference="alignment:exonerate-protein:2:frave:gene19855" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037235t1" /inference="similar to AA sequence:frave:gene19855" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc1209t4" CDS complement(join(27169436..27170260,27171130..27171768)) /locus_tag="TCM_030467" /note="dbxref frave:gene19855; paralog of Thecc1EG037235t1" /codon_start=1 /product="Phosphofructokinase 2" /protein_id="EOY29039.1" /db_xref="TAIR:AT5G47810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FIK0" /translation="MVLSQPEASILTAVSYRQQLEQVYGSASDDAFSFSPTITLQKLP HLSEYTNHLQPAGPNPLDRNPFFHPTDGFYITPSDVILRQVVYDLSPSRTLPSPSHGR YLAYHRAGPRNQIFFDPCTTRAAIVTCGGLCPGMNTVIRELVVGLWDLYGVRQIYGIK AGYRGFYSTHPIELNPKLVRNWHKRGGTVLETSRGGFDLTRIVDAIEHRGFNQVYIIG GDGTMRGAVKIFEEIRRRKLRVGVAGIPKTVDNDVGIIDRSFGFQTAVEMAQQAINAA HVEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPETEFYLEAKGGLFEFLE QRLKERGHAVLVVAEGAGQDLIPRSDAQKEERDESGNLVFLDVGAWLNSELKKWWARD HPDELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGVMGGYTGFVSGPINGNYA YIPLTDVAQAKNEVNTKDHKWAWVRSVTNQPDFVKPG" gene 27171220..27177050 /locus_tag="TCM_030468" /note="dbxref CacaoGD:Thecc1EG030468" mRNA join(27171220..27171225,27171551..27171918, 27173156..27173314,27173477..27173586,27173726..27173823, 27173963..27174127,27174202..27174254,27174334..27174443, 27174684..27175221,27175309..27175403,27175502..27175750, 27175854..27175968,27176078..27176291,27176382..27177050) /locus_tag="TCM_030468" /product="Subtilase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01014788001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030557t1" /inference="similar to AA sequence:ricco:29805.m001529" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS join(27173222..27173314,27173477..27173586, 27173726..27173823,27173963..27174127,27174202..27174254, 27174334..27174443,27174684..27175221,27175309..27175403, 27175502..27175750,27175854..27175968,27176078..27176291, 27176382..27176932) /locus_tag="TCM_030468" /note="dbxref ricco:29805.m001529; paralog of Thecc1EG030557t1" /codon_start=1 /product="Subtilase family protein, putative" /protein_id="EOY29040.1" /db_xref="TAIR:AT5G59810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I2C9" /translation="MIMWFPKLSLFLLSFGICCSLFQAPAFAIKKSYIVYLGSHVHGP EVTDADLDRVTDSHYNLLGSFLGSKEKAREAIFDSYQRHINGFAATLEEEEAAEIAKH PEVVSVFHNRQSKLQTTHSWELMSLEWNGEVIPGSLWTEGRFGEDTIIANLDTVVFQK TKYILICNMERNKAFGPDQKAFATKGLDLFRPGGKVNVSLTLRLGFACNRKLIGARYF NKGFISNGGGVNSSQLNALDEDGHGTHTLSTAGGNFVPGATVLGVDYGTAKGGSPKAR VAAYKVCWGPKNKCFDSDVLAAFDMAIHDGVDVISVSLASKDVGSGYFDDVRAIGAFH AVKHGITVVFAAGNTAREGAGSVRNFAPWMITVAASTLDRKFKDYVELENGLHLEGIS LSKPLPERRLYPLITGAEGMVANGSSDVGLLCLEDLDPNKVKGKIVVCLEGGYVFPVM KGLLVAEAGAAGMIMCNHERSPNETSFEELHFLPVSHLNYEDCRSLYAYINSSDNPMA YFTPPTTQLYTKPAPLMAVSSSRGPNPFTPEILKPDITAPGVDIIAANTEAVSPTGFP EDTRRSAFLFKSGTSMSCPHVAGVAGLLKTLKPDWSPAAIRSAIMTTAETRDNTGNAL RDDLSLNKSTPFGYGSGHIKPNRAMNPGLVYDLRVEDYLDFLCAIGYNQSMVERFSEG PYTCPESGNPLDLNYPSIAVPKLSGSVTISRKLKNVGTPGNYTARVCEPFGISVSVEP SSLQFENIGEEKGFKLTLKAKGDGAANKDYVFGALTWTDGKHYVRSPIAVAAAAST" gene 27177083..27186416 /locus_tag="TCM_030469" /note="dbxref CacaoGD:Thecc1EG030469" mRNA join(27177083..27177611,27178021..27178265, 27178717..27178807,27178936..27178984,27179125..27179216, 27179928..27180035,27180116..27180244,27180415..27180816, 27181505..27181646,27181731..27181798,27182297..27182431, 27182552..27182769,27182852..27182940,27183059..27183605, 27186280..27186416) /locus_tag="TCM_030469" /product="Seed imbibition 2" /inference="alignment:exonerate- protein:2:ricco:29805.m001530.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014511t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00410.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc5556t14_C2" CDS join(27177274..27177611,27178021..27178265, 27178717..27178807,27178936..27178984,27179125..27179216, 27179928..27180035,27180116..27180244,27180415..27180816, 27181505..27181646,27181731..27181798,27182297..27182431, 27182552..27182769,27182852..27182940,27183059..27183352) /locus_tag="TCM_030469" /note="paralog of Thecc1EG014511t1" /codon_start=1 /product="Seed imbibition 2" /protein_id="EOY29041.1" /db_xref="Phytozome:POPTR_0016s00410.1" /db_xref="TAIR:AT3G57520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94A08" /translation="MATPTLLHTTTAYVLSLRPKSPFSTPFLSTNLGQRQSFLSHRSL LLPQKWRQHMFLSTRPLLKDGNLRINGKEALKDVPANIVVTPLTDTSAFVGATSSDSS SRHVFKLGVIKDVKLLCLFRFKLWWMIPRVGSSGSDIPVETQMLLLEAKEGPTSDDAS DHSTYIIFLPVLDGKFRSSLQGNTSDELEFCVESGDPAIVTSQSLNAIFVNYGNHPFD LVKDSMMILEKQFGTFAHRETKQMPGMLDWFGWCTWDAFYQEVNPQGIKDGLMSLSQG GTPARFLIIDDGWQDTVNDFQKEGEPIVEGSQFGGRLASIKENKKFRRIANEAKSKAP RDLKEFVSDIKKTFGLKYVYVWHALLGYWGGLAPNTLGTKMYNPKLRYPVQSPENRGD ISLDSMEKYGIGVIDPDKISQFYDDLHRYLVSQNVDGVKVDVQNILETISAGLGGRVS LTRQFQQALERSIAANFEDNSIICCMCQSTDSIYHSKQSAISRASDDYYPKNPTTQTL HVAAVAFNSIFLGEVFVPDWDMFYSLHDAAEFHAVARAVGGCGVYVSDKPGQHDFTIL ERLVLSDGSVLRAKYPGRPSRDCLFTDPVMDGKSLLKIWNLNECSGVIGIFNCQGAGS WPYTKKNAVKMAAGSELVGQVSPADIEYFEEVSGKQWTGDCAVYSFNAGCVSRMPMEG SFNVALKVLECDVFTVSPIKVYNEAIEFAAIGLLSMYNSGGALECVESSADPSTSSSS CKIHVKGRGSGCFGAYSNTKPKSCSINLKDEVFNFSGEDNLLTISIPATTNAWDVAIS Y" mobile_element complement(27183583..27183805) /note="source:scaffold_9_CACTA_0934 14618 14877" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27184088..27184223 /note="source:CACAO_hAT_E410_scaffold_1 729 867" /mobile_element_type="transposon:TIR/hAT" mobile_element 27184214..27184841 /note="source:CACAO_hAT_E410_scaffold_1 1424 2059" /mobile_element_type="transposon:TIR/hAT" mobile_element 27185330..27185832 /note="source:scaffold_5_CACTA_0607 3938 4450" /mobile_element_type="transposon:TIR/CACTA" gene 27186575..27189423 /locus_tag="TCM_030470" /note="dbxref CacaoGD:Thecc1EG030470" mRNA join(27186575..27186936,27187044..27187183, 27187292..27187374,27187527..27187731,27187843..27187911, 27188812..27189071) /locus_tag="TCM_030470" /product="RAB GTPase B1C isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT4G17170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002490t1" /inference="similar to AA sequence:Phytozome:Glyma15g12880.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc107t2; inference alignment:Newbler:10:TSA:cgbaP1_g04735t00001" mRNA join(27186713..27186936,27187044..27187183, 27187292..27187374,27187527..27187731,27187843..27187911, 27189048..27189423) /locus_tag="TCM_030470" /product="RAB GTPase B1C isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G17170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002490t1" /inference="similar to AA sequence:TAIR:AT4G17170.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04735t00001; inference alignment:Newbler:10:TSA:cgbaP1_g04735t00001" CDS join(27186891..27186936,27187044..27187183, 27187292..27187374,27187527..27187731,27187843..27187911, 27189048..27189140) /locus_tag="TCM_030470" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002490t1" /codon_start=1 /product="RAB GTPase B1C isoform 1" /protein_id="EOY29042.1" /db_xref="TAIR:AT4G17170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XQN5" /translation="MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG ARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE DARQHANANMTIMLIGNKCDLAHRRAVTTEEGEQFAKDHGLIFMEASAKTAQNVEEAF IKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQGGGCCN" CDS join(27186891..27186936,27187044..27187183, 27187292..27187374,27187527..27187731,27187843..27187911, 27188812..27188829) /locus_tag="TCM_030470" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002490t1" /codon_start=1 /product="RAB GTPase B1C isoform 2" /protein_id="EOY29043.1" /db_xref="Phytozome:Glyma15g12880.1" /db_xref="TAIR:AT4G17170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XQN5" /translation="MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG ARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE DARQHANANMTIMLIGNKCDLAHRRAVTTEEGEQFAKDHGLIFMEASAKTAQNVEEAF IKTAATIYKKIQDGVFDVSNEEVQFI" gene 27190191..27199817 /locus_tag="TCM_030472" /note="dbxref CacaoGD:Thecc1EG030472" mRNA join(27190191..27191375,27191475..27191524, 27191617..27191773,27191912..27192130,27192608..27192736, 27192951..27194558,27194721..27195080,27195643..27195762, 27196857..27197027,27197759..27197923,27198108..27198236, 27198699..27199817) /locus_tag="TCM_030472" /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29805.m001532" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030550t2" /inference="similar to AA sequence:ricco:29805.m001532" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9241t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9241t2" mRNA join(27190191..27191375,27191475..27191524, 27191617..27191773,27191912..27192130,27192608..27192736, 27192951..27194558,27194721..27195080,27195643..27195762, 27196857..27197027,27197759..27197923,27198111..27198236, 27198699..27199817) /locus_tag="TCM_030472" /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29805.m001532" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030550t2" /inference="similar to AA sequence:ricco:29805.m001532" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9241t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9241t2" mRNA join(27190218..27191375,27191475..27191524, 27191617..27191773,27191912..27192130,27192608..27192736, 27192951..27194558,27194721..27195762,27196857..27197027) /locus_tag="TCM_030472" /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:29805.m001532" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030550t2" /inference="similar to AA sequence:ricco:29805.m001532" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc370t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9241t2" mRNA join(27190218..27191375,27191475..27191524, 27191617..27191773,27191912..27192130,27192608..27192736, 27192951..27194558,27194721..27195087,27195640..27195762, 27196857..27197027) /locus_tag="TCM_030472" /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29805.m001532" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030550t2" /inference="similar to AA sequence:ricco:29805.m001532" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc370t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9241t2" CDS join(27190527..27191375,27191475..27191524, 27191617..27191773,27191912..27192130,27192608..27192736, 27192951..27194558,27194721..27195080,27195643..27195762, 27196857..27197027,27197759..27197923,27198108..27198236, 27198699..27199004) /locus_tag="TCM_030472" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29805.m001532; paralog of Thecc1EG030550t2" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 1" /protein_id="EOY29044.1" /db_xref="TAIR:AT3G13290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTT9" /translation="MASTGNPNQQPQVGGGGGGFDMTKLFKPSSGPLLQQQQQQLHQN LNVIATPPSPSPSPSTTNLTTSPSFPAQSSTPPPPPYLTPSSSYPPPTGPYAFHHPHY LPYPSPPQHQHPLHPHHHQPQLNINRPFPYQAQPQPSPPATPTSGNDLLMAFFGTPAQ TQSQTPAPLPSAPPLNSNVTPSAPSASPSPSPSPVRLLSSKAPKGRHLFGTNLLYDIH VRLPGEVQPQLEVTPITKYASDPGLVLGRQIAVNRNYICYGLKLGNIRILNINTALRS LLRGHTQRVTDMAFFAEDVHLLASASVDGRVFVWKINEGPDDDDKPQIFGKVVIAIQI VGQEESIHPRVCWHPHKQEILMVAIGNRILKIDTMKVGKLEGFSAEEPLNCSVDKLID GVQFVGKHDGEITELSMCQWLSTRLASASVDGMVKIWEDRKASPLAVLRPHDGHPVNS ATFLTAPHRPDHIVLITGGPLNRELKIWASASEEGWLLPNDTESWQCTQTLELRSSVE SKVEDAFFNQVVALPRAGLFLLANAKKNAIYAVHIDYGPNPAETRMDYIAEFTVTMPI LSLTGTSDSLPGGEHTVQVYCVQTQAIQQYALDLSQCLPPPLENADLEKTDSNVSRVL DVSNSDVSASLESSHGYKPTDMTLSSSIPMSPLHSSSPDSATMASRPQKLASSEVTSI SESSVSGIESKPSALPSHSSAENMHTASPPLPVSPRLSQKSSGFRSPSSADHIGNHSA HDHSVDHRVDVVKENKVDIPSSGDNLRKGQNETAQNDISMISDPSVVFKHPTHLVTPS EILSTVASSAENAQISQDISAGEATVQDVVANNDAESMEVEVKVVGETGFGQTNETDH PRDSHSTVADKKEKAFYSQASDLGIQMARDFCAETYDVEGAQQANDVGVAGQAVRPTN ARDGEDQNGTKDVPPKVGESDTAITVSPSLASAKGKKQKGKNSQVSGPSSPSASPYNS TDSSNEPGCSSGALLADAAFPQLLAMQDVLEQLVSMQREMQKQMNAIVSAPVNKEGKR LEVSLGRSIEKVVKANTDALWARFQDENAKHEKLERDRTQQISNLITNCINKDLPAMF EKSLKKEISAVGPVVARAITPTLEKSISSAITESFQKGVGERAVNQLEKSVSSKLEAT VARQIQAQFQTSGKQALQDALRSSLESSIIPAFEMSCKSMFEQIDVTFQKGLIKHTTA AQQQFENSHSSLAVALRDAINSATSITQTLSGELADGQRKLLAIAAAGANSKAGNTLV TQLSNGPLAHLHEMQPEAHVDPTKELSRLIAERKYDEAFTAALHRSDVSIVSWLCSQV DLQGILSMKQCPLSQGVLLALFQQLACDINKETSRKLAWMTDVAVAINPSDPMIAVHV LPIFRQVSQIVEHLQSLPSTSASESASIRVLMFVINSVLSCK" CDS join(27190527..27191375,27191475..27191524, 27191617..27191773,27191912..27192130,27192608..27192736, 27192951..27194558,27194721..27195080,27195643..27195762, 27196857..27197027,27197759..27197923,27198111..27198236, 27198699..27199004) /locus_tag="TCM_030472" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29805.m001532; paralog of Thecc1EG030550t2" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 2" /protein_id="EOY29045.1" /db_xref="TAIR:AT3G13290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTT9" /translation="MASTGNPNQQPQVGGGGGGFDMTKLFKPSSGPLLQQQQQQLHQN LNVIATPPSPSPSPSTTNLTTSPSFPAQSSTPPPPPYLTPSSSYPPPTGPYAFHHPHY LPYPSPPQHQHPLHPHHHQPQLNINRPFPYQAQPQPSPPATPTSGNDLLMAFFGTPAQ TQSQTPAPLPSAPPLNSNVTPSAPSASPSPSPSPVRLLSSKAPKGRHLFGTNLLYDIH VRLPGEVQPQLEVTPITKYASDPGLVLGRQIAVNRNYICYGLKLGNIRILNINTALRS LLRGHTQRVTDMAFFAEDVHLLASASVDGRVFVWKINEGPDDDDKPQIFGKVVIAIQI VGQEESIHPRVCWHPHKQEILMVAIGNRILKIDTMKVGKLEGFSAEEPLNCSVDKLID GVQFVGKHDGEITELSMCQWLSTRLASASVDGMVKIWEDRKASPLAVLRPHDGHPVNS ATFLTAPHRPDHIVLITGGPLNRELKIWASASEEGWLLPNDTESWQCTQTLELRSSVE SKVEDAFFNQVVALPRAGLFLLANAKKNAIYAVHIDYGPNPAETRMDYIAEFTVTMPI LSLTGTSDSLPGGEHTVQVYCVQTQAIQQYALDLSQCLPPPLENADLEKTDSNVSRVL DVSNSDVSASLESSHGYKPTDMTLSSSIPMSPLHSSSPDSATMASRPQKLASSEVTSI SESSVSGIESKPSALPSHSSAENMHTASPPLPVSPRLSQKSSGFRSPSSADHIGNHSA HDHSVDHRVDVVKENKVDIPSSGDNLRKGQNETAQNDISMISDPSVVFKHPTHLVTPS EILSTVASSAENAQISQDISAGEATVQDVVANNDAESMEVEVKVVGETGFGQTNETDH PRDSHSTVADKKEKAFYSQASDLGIQMARDFCAETYDVEGAQQANDVGVAGQAVRPTN ARDGEDQNGTKDVPPKVGESDTAITVSPSLASAKGKKQKGKNSQVSGPSSPSASPYNS TDSSNEPGCSSGALLADAAFPQLLAMQDVLEQLVSMQREMQKQMNAIVSAPVNKEGKR LEVSLGRSIEKVVKANTDALWARFQDENAKHEKLERDRTQQISNLITNCINKDLPAMF EKSLKKEISAVGPVVARAITPTLEKSISSAITESFQKGVGERAVNQLEKSVSSKLEAT VARQIQAQFQTSGKQALQDALRSSLESSIIPAFEMSCKSMFEQIDVTFQKGLIKHTTA AQQQFENSHSSLAVALRDAINSATSITQTLSGELADGQRKLLAIAAAGANSKAGNTLV TQLSNGPLAHLHEMPEAHVDPTKELSRLIAERKYDEAFTAALHRSDVSIVSWLCSQVD LQGILSMKQCPLSQGVLLALFQQLACDINKETSRKLAWMTDVAVAINPSDPMIAVHVL PIFRQVSQIVEHLQSLPSTSASESASIRVLMFVINSVLSCK" CDS join(27190527..27191375,27191475..27191524, 27191617..27191773,27191912..27192130,27192608..27192736, 27192951..27194558,27194721..27195087,27195640..27195689) /locus_tag="TCM_030472" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29805.m001532; paralog of Thecc1EG030550t2" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 3" /protein_id="EOY29046.1" /db_xref="TAIR:AT3G13300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N5M5" /translation="MASTGNPNQQPQVGGGGGGFDMTKLFKPSSGPLLQQQQQQLHQN LNVIATPPSPSPSPSTTNLTTSPSFPAQSSTPPPPPYLTPSSSYPPPTGPYAFHHPHY LPYPSPPQHQHPLHPHHHQPQLNINRPFPYQAQPQPSPPATPTSGNDLLMAFFGTPAQ TQSQTPAPLPSAPPLNSNVTPSAPSASPSPSPSPVRLLSSKAPKGRHLFGTNLLYDIH VRLPGEVQPQLEVTPITKYASDPGLVLGRQIAVNRNYICYGLKLGNIRILNINTALRS LLRGHTQRVTDMAFFAEDVHLLASASVDGRVFVWKINEGPDDDDKPQIFGKVVIAIQI VGQEESIHPRVCWHPHKQEILMVAIGNRILKIDTMKVGKLEGFSAEEPLNCSVDKLID GVQFVGKHDGEITELSMCQWLSTRLASASVDGMVKIWEDRKASPLAVLRPHDGHPVNS ATFLTAPHRPDHIVLITGGPLNRELKIWASASEEGWLLPNDTESWQCTQTLELRSSVE SKVEDAFFNQVVALPRAGLFLLANAKKNAIYAVHIDYGPNPAETRMDYIAEFTVTMPI LSLTGTSDSLPGGEHTVQVYCVQTQAIQQYALDLSQCLPPPLENADLEKTDSNVSRVL DVSNSDVSASLESSHGYKPTDMTLSSSIPMSPLHSSSPDSATMASRPQKLASSEVTSI SESSVSGIESKPSALPSHSSAENMHTASPPLPVSPRLSQKSSGFRSPSSADHIGNHSA HDHSVDHRVDVVKENKVDIPSSGDNLRKGQNETAQNDISMISDPSVVFKHPTHLVTPS EILSTVASSAENAQISQDISAGEATVQDVVANNDAESMEVEVKVVGETGFGQTNETDH PRDSHSTVADKKEKAFYSQASDLGIQMARDFCAETYDVEGAQQANDVGVAGQAVRPTN ARDGEDQNGTKDVPPKVGESDTAITVSPSLASAKGKKQKGKNSQVSGPSSPSASPYNS TDSSNEPGCSSGALLADAAFPQLLAMQDVLEQLVSMQREMQKQMNAIVSAPVNKEGKR LEVSLGRSIEKVVKANTDALWARFQDENAKHEKLERDRTQQISNLITNCINKDLPAMF EKSLKKEISAVGPVVARAITPTLEKSISSAITESFQVKAERSRREGSESTGEVS" CDS join(27190527..27191375,27191475..27191524, 27191617..27191773,27191912..27192130,27192608..27192736, 27192951..27194558,27194721..27195221) /locus_tag="TCM_030472" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29805.m001532; paralog of Thecc1EG030550t2" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 4" /protein_id="EOY29047.1" /db_xref="TAIR:AT3G13300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N5M5" /translation="MASTGNPNQQPQVGGGGGGFDMTKLFKPSSGPLLQQQQQQLHQN LNVIATPPSPSPSPSTTNLTTSPSFPAQSSTPPPPPYLTPSSSYPPPTGPYAFHHPHY LPYPSPPQHQHPLHPHHHQPQLNINRPFPYQAQPQPSPPATPTSGNDLLMAFFGTPAQ TQSQTPAPLPSAPPLNSNVTPSAPSASPSPSPSPVRLLSSKAPKGRHLFGTNLLYDIH VRLPGEVQPQLEVTPITKYASDPGLVLGRQIAVNRNYICYGLKLGNIRILNINTALRS LLRGHTQRVTDMAFFAEDVHLLASASVDGRVFVWKINEGPDDDDKPQIFGKVVIAIQI VGQEESIHPRVCWHPHKQEILMVAIGNRILKIDTMKVGKLEGFSAEEPLNCSVDKLID GVQFVGKHDGEITELSMCQWLSTRLASASVDGMVKIWEDRKASPLAVLRPHDGHPVNS ATFLTAPHRPDHIVLITGGPLNRELKIWASASEEGWLLPNDTESWQCTQTLELRSSVE SKVEDAFFNQVVALPRAGLFLLANAKKNAIYAVHIDYGPNPAETRMDYIAEFTVTMPI LSLTGTSDSLPGGEHTVQVYCVQTQAIQQYALDLSQCLPPPLENADLEKTDSNVSRVL DVSNSDVSASLESSHGYKPTDMTLSSSIPMSPLHSSSPDSATMASRPQKLASSEVTSI SESSVSGIESKPSALPSHSSAENMHTASPPLPVSPRLSQKSSGFRSPSSADHIGNHSA HDHSVDHRVDVVKENKVDIPSSGDNLRKGQNETAQNDISMISDPSVVFKHPTHLVTPS EILSTVASSAENAQISQDISAGEATVQDVVANNDAESMEVEVKVVGETGFGQTNETDH PRDSHSTVADKKEKAFYSQASDLGIQMARDFCAETYDVEGAQQANDVGVAGQAVRPTN ARDGEDQNGTKDVPPKVGESDTAITVSPSLASAKGKKQKGKNSQVSGPSSPSASPYNS TDSSNEPGCSSGALLADAAFPQLLAMQDVLEQLVSMQREMQKQMNAIVSAPVNKEGKR LEVSLGRSIEKVVKANTDALWARFQDENAKHEKLERDRTQQISNLITNCINKDLPAMF EKSLKKEISAVGPVVARAITPTLEKSISSAITESFQVKEPNCVVISECFVSHWSEVFI YLDRCTIMNEAMTGNVAILSYGKC" gene 27197759..27203639 /locus_tag="TCM_030473" /note="dbxref CacaoGD:Thecc1EG030473" mRNA join(27197759..27197923,27198108..27198236, 27198699..27202540,27202785..27203639) /locus_tag="TCM_030473" /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400049976" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029817t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400049976" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b029472t1a3; alternateUTRof:Thecc1EG030473t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc379t15" mRNA join(27197759..27197923,27198108..27198236, 27198699..27201906,27201991..27202658) /locus_tag="TCM_030473" /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400049976" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029817t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400049976" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:PASA:2:TSA:puevd3b029472t1a2; alternateUTRof:Thecc1EG030473t1; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc379t15" mobile_element complement(27197923..27197984) /note="source:scaffold_6_CACTA_0717 5671 5727" /mobile_element_type="transposon:TIR/CACTA" mRNA join(27199346..27201906,27201991..27202251) /locus_tag="TCM_030473" /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400049976" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029817t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400049976" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc379t15" CDS 27199418..27201445 /locus_tag="TCM_030473" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029817t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /protein_id="EOY29048.1" /db_xref="Phytozome:PGSC0003DMP400049976" /db_xref="TAIR:AT3G24000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIQ7" /translation="MNFFCYRGRVSEAVVNGFLNNRIMAMKLKSRVAYAASRYSTYAI ASTLLPRQQTKWDYCSSSSCIIEDKDLLQKSLHPSGTGLHVLDLLDQGSLEPHRALYH LLLKKCTRLRKPKLGKIVHAHILNSLFRHDLVILNSLLNMYAKCGCLDDARNLFDQMP VKDMVSWTTLITAYSQHGRPFHAILLFPHMLSLGFFPNQFTLSSLLKASAALPDTPHI HFHGTQLHAFCFKCGLHSNVYVGSSLLDMYARCGCMDEARLIFDALHSKNEVSWNALI AGHARKGQADHALWLFRKMLRQDFQPTHFTFCSILGACASTGSLEQGKWVHAHVIKSG GEIVAFMGNTLLHMYAKSGSIQDAKMIFDRLVKSDVVSWNSMLTAYAQHGLGKEAVQW FQEMLRIGVGPNDITFLCLLTACSRAGLLDQGQYYFKLMSNYNIEPQISHYVTIVDLF GRAGLLDKAERFIREMPIKPTAAVWGALLGACRMHKNMELGTYAAERVFELDPHDSGP LVLLSNIYASAGRWSDAAKVRKMMKESGVKKEPACSWVEIENTVHVFVANDDAHPQME EIHKMWEEISARIKEIGYVPDISHVLFYMDQQEREIKLQYHSEKLALAFALLNSSPGS TIRIKKNIRVCGDCHSAIKFVSQVVRREIIVRDTNRFHHFRGGSCSCGDYW" CDS 27199418..27201445 /locus_tag="TCM_030473" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029817t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /protein_id="EOY29049.1" /db_xref="Phytozome:PGSC0003DMP400049976" /db_xref="TAIR:AT3G24000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIQ7" /translation="MNFFCYRGRVSEAVVNGFLNNRIMAMKLKSRVAYAASRYSTYAI ASTLLPRQQTKWDYCSSSSCIIEDKDLLQKSLHPSGTGLHVLDLLDQGSLEPHRALYH LLLKKCTRLRKPKLGKIVHAHILNSLFRHDLVILNSLLNMYAKCGCLDDARNLFDQMP VKDMVSWTTLITAYSQHGRPFHAILLFPHMLSLGFFPNQFTLSSLLKASAALPDTPHI HFHGTQLHAFCFKCGLHSNVYVGSSLLDMYARCGCMDEARLIFDALHSKNEVSWNALI AGHARKGQADHALWLFRKMLRQDFQPTHFTFCSILGACASTGSLEQGKWVHAHVIKSG GEIVAFMGNTLLHMYAKSGSIQDAKMIFDRLVKSDVVSWNSMLTAYAQHGLGKEAVQW FQEMLRIGVGPNDITFLCLLTACSRAGLLDQGQYYFKLMSNYNIEPQISHYVTIVDLF GRAGLLDKAERFIREMPIKPTAAVWGALLGACRMHKNMELGTYAAERVFELDPHDSGP LVLLSNIYASAGRWSDAAKVRKMMKESGVKKEPACSWVEIENTVHVFVANDDAHPQME EIHKMWEEISARIKEIGYVPDISHVLFYMDQQEREIKLQYHSEKLALAFALLNSSPGS TIRIKKNIRVCGDCHSAIKFVSQVVRREIIVRDTNRFHHFRGGSCSCGDYW" CDS 27199418..27201445 /locus_tag="TCM_030473" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG029817t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /protein_id="EOY29050.1" /db_xref="Phytozome:PGSC0003DMP400049976" /db_xref="TAIR:AT3G24000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIQ7" /translation="MNFFCYRGRVSEAVVNGFLNNRIMAMKLKSRVAYAASRYSTYAI ASTLLPRQQTKWDYCSSSSCIIEDKDLLQKSLHPSGTGLHVLDLLDQGSLEPHRALYH LLLKKCTRLRKPKLGKIVHAHILNSLFRHDLVILNSLLNMYAKCGCLDDARNLFDQMP VKDMVSWTTLITAYSQHGRPFHAILLFPHMLSLGFFPNQFTLSSLLKASAALPDTPHI HFHGTQLHAFCFKCGLHSNVYVGSSLLDMYARCGCMDEARLIFDALHSKNEVSWNALI AGHARKGQADHALWLFRKMLRQDFQPTHFTFCSILGACASTGSLEQGKWVHAHVIKSG GEIVAFMGNTLLHMYAKSGSIQDAKMIFDRLVKSDVVSWNSMLTAYAQHGLGKEAVQW FQEMLRIGVGPNDITFLCLLTACSRAGLLDQGQYYFKLMSNYNIEPQISHYVTIVDLF GRAGLLDKAERFIREMPIKPTAAVWGALLGACRMHKNMELGTYAAERVFELDPHDSGP LVLLSNIYASAGRWSDAAKVRKMMKESGVKKEPACSWVEIENTVHVFVANDDAHPQME EIHKMWEEISARIKEIGYVPDISHVLFYMDQQEREIKLQYHSEKLALAFALLNSSPGS TIRIKKNIRVCGDCHSAIKFVSQVVRREIIVRDTNRFHHFRGGSCSCGDYW" gene 27202496..27203678 /locus_tag="TCM_030474" /note="dbxref CacaoGD:Thecc1EG030474" mRNA join(27202496..27202540,27202785..27203678) /locus_tag="TCM_030474" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.94 coverage" CDS join(27202509..27202540,27202785..27203187) /locus_tag="TCM_030474" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY29051.1" /translation="METNCPLNIIRNLEEMDREQQKKKRGRAEEDSYYKNYLHQAAKI QDMEHCNNSVMGNTQDSSKDYKSALGVFDFPWMLDGIVSKSQDWNYVEDTTFSSSLAD TCRCRVKFSENFDESEDGRGLETDCIWASLLHQGQGGPNEQS" gene 27204050..27208047 /locus_tag="TCM_030475" /note="dbxref CacaoGD:Thecc1EG030475" mRNA join(27204050..27204441,27204531..27204565, 27204645..27204686,27204767..27204839,27204945..27205102, 27205344..27205606,27205809..27206166,27206433..27207008, 27207259..27208047) /locus_tag="TCM_030475" /product="Galacturonosyltransferase 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006978001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005461t1" /inference="similar to AA sequence:ricco:29805.m001535" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc415t3" mRNA join(27204189..27204441,27204531..27204565, 27204645..27204686,27204767..27204839,27204951..27205102, 27205344..27205606,27205809..27206166,27206433..27207008, 27207259..27207913) /locus_tag="TCM_030475" /product="Galacturonosyltransferase 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01006978001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005461t1" /inference="similar to AA sequence:ricco:29805.m001535" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9263t2; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc415t3" CDS join(27204342..27204441,27204531..27204565, 27204645..27204686,27204767..27204839,27204945..27205102, 27205344..27205606,27205809..27206166,27206433..27207008, 27207259..27207534) /locus_tag="TCM_030475" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29805.m001535; paralog of Thecc1EG005461t1" /codon_start=1 /product="Galacturonosyltransferase 4 isoform 1" /protein_id="EOY29052.1" /db_xref="TAIR:AT5G47780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZX7" /translation="MKVRHLVLGLLSVTVIAPIFLYTDRVATFNPSSSGRDFLDDVAT FTLLGDTRRLNVLPQETSTAIKEPAGIVYSDHSNNSFRKVTETREHKSTRVLSATDEE RQPQLHNPIRQVTDPAPANLTTPLDSHPNASHHLGTKLEQQPTQLAGNIDQKEHSDNK TSRLAEPVDAQVRHLKDQLIRAKVYLSLPAIKSNQHVTRELRLRIKEVSRALGDATKD SDLPKNAFDKLKAMEQSLEKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTMFLTQ LTAKTLPKGLHCLPLRLTTEYYTLNSSQQNFLNQEKLEDPRLYHYALFSDNVLAAAVV VNSTVSHAKHPSNHVFHIVTDRLNYAAMRMWFLNNPPGKATIQVQNIEEFTWLNSSYS PVLKQLGSPSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEIFPKLNKVLFL DDDIVVRKDISGLWSLDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPHACGW AYGMNIFDLEEWRRQNITEVYHRWQKLNHDRQLWKLGTLPPGLITFWKRTYPLDRSWH VLGLGYNPNVNQREVERAAVIHYNGNLKPWLEIGIPKYKNYWAKYVDYDNMYLRDCNI NP" CDS join(27204342..27204441,27204531..27204565, 27204645..27204686,27204767..27204839,27204951..27205102, 27205344..27205606,27205809..27206166,27206433..27207008, 27207259..27207534) /locus_tag="TCM_030475" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29805.m001535; paralog of Thecc1EG005461t1" /codon_start=1 /product="Galacturonosyltransferase 4 isoform 2" /protein_id="EOY29053.1" /db_xref="TAIR:AT5G47780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZX7" /translation="MKVRHLVLGLLSVTVIAPIFLYTDRVATFNPSSSGRDFLDDVAT FTLLGDTRRLNVLPQETSTAIKEPAGIVYSDHSNNSFRKETREHKSTRVLSATDEERQ PQLHNPIRQVTDPAPANLTTPLDSHPNASHHLGTKLEQQPTQLAGNIDQKEHSDNKTS RLAEPVDAQVRHLKDQLIRAKVYLSLPAIKSNQHVTRELRLRIKEVSRALGDATKDSD LPKNAFDKLKAMEQSLEKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTMFLTQLT AKTLPKGLHCLPLRLTTEYYTLNSSQQNFLNQEKLEDPRLYHYALFSDNVLAAAVVVN STVSHAKHPSNHVFHIVTDRLNYAAMRMWFLNNPPGKATIQVQNIEEFTWLNSSYSPV LKQLGSPSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEIFPKLNKVLFLDD DIVVRKDISGLWSLDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPHACGWAY GMNIFDLEEWRRQNITEVYHRWQKLNHDRQLWKLGTLPPGLITFWKRTYPLDRSWHVL GLGYNPNVNQREVERAAVIHYNGNLKPWLEIGIPKYKNYWAKYVDYDNMYLRDCNINP " gene 27208165..27209045 /locus_tag="TCM_030476" /note="dbxref CacaoGD:Thecc1EG030476" mRNA join(27208165..27208840,27208935..27209045) /locus_tag="TCM_030476" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene19863" /note="quality class is strong, express is strong, homology is paralog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage" CDS join(27208357..27208840,27208935..27208969) /locus_tag="TCM_030476" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY29054.1" /translation="MARTRYHPLPSCPSPAHLCLLILFIIAPPLNGTELVKEVCNHTS DYAFCAETFNTGGPRALAGELANAALRLAQTKASHAQSLIARLLKNATTPVDRNRLQI CQSCSNKAVSELSSANNDFNSDTLDTMVQGMNSAADATKDCQNQIQGRGTYFSGLATI NGFSILINLLLF" gene 27209116..27211979 /locus_tag="TCM_030477" /note="dbxref CacaoGD:Thecc1EG030477" mRNA 27209116..27211979 /locus_tag="TCM_030477" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29729.m002326" /inference="similar to AA sequence:ricco:29729.m002326" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage" CDS 27209449..27211416 /locus_tag="TCM_030477" /note="dbxref ricco:29729.m002326" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY29055.1" /db_xref="TAIR:AT1G09410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q75L17" /translation="MSGHLSKLPALIRRFAHFNFLFSAHPIRHHTDIFVTKPASYTRE CNMRINDFGRRGKVKAAKQLFDEMLQSHRDAASYASMITVYLKNNHLPKAEALFTSMP RTHRNIVAESAMIHGYVKAGRLPEARKLFDDMVDRNVFSWTSLISGYFAVGQVAEGRL LFEQMPMSVKNVVSWTTVVLGYAHNGLIDEARHVFDRMPDKNIVAWTAMLKSYVDNGR IDDAIRLFYQMPQRNLYAWNIMISACLKVSRVCLAIQLFDSLPHKNLISWTSMVSGLA RNGMTKQAREYFDQMPVSKDIAAWNAMITAYVDQGDMPKASELFYSMPNKNIVAWNVM IDGYSRNGAQGEAFSLLILMLRSGFRPNETTITSVLTSCNSILEVGQAHALVFRLGFD FEHGISLTKTLLSAYSRIGDLNSARLAFQGLKAKDLVSWTAMILAYSHHGYGKHALHV FAAMLTSGAKPDEITFVGVLSACSHAGFVEKGQRLFDSMSHMYGLQPRAEHYSCLVDI LGRAGQVEKAMSVVNKMPPSECDGAVLGALLAACRLHRDDKIANHIGKQLIELEPTDS GGYVLLANVYAAQEKWNEFARVRKMMKERKVKKVAGFSYVEVKGKNHVFFVGDRCHPQ VEEMYEMLRVMLPPRTSGVDCIQGDPTIPLS" mobile_element complement(27212232..27212422) /note="source:CACAO_MITE110_scaffold_6 207 416" /mobile_element_type="transposon:TIR/MITE" mobile_element 27212423..27212568 /note="source:INTACT1_F64_scaffold_3-int 1197 1593" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27212458..27212584) /note="source:CACAO_on_E681_scaffold_9 29 157" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 27213445..27217412 /locus_tag="TCM_030478" /note="dbxref CacaoGD:Thecc1EG030478" mRNA join(27213445..27213857,27214126..27214221, 27215459..27217412) /locus_tag="TCM_030478" /product="Zinc finger family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene19865" /inference="similar to AA sequence:ricco:29805.m001540" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc462t1" mRNA join(27213445..27213857,27214126..27214221, 27215462..27217412) /locus_tag="TCM_030478" /product="Zinc finger family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene19865" /inference="similar to AA sequence:Phytozome:POPTR_0016s00330.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:PASA:2:TSA:puevd3b029476t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc462t1" CDS join(27213534..27213857,27214126..27214221, 27215459..27216856) /locus_tag="TCM_030478" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29805.m001540" /codon_start=1 /product="Zinc finger family protein isoform 1" /protein_id="EOY29056.1" /db_xref="TAIR:AT5G60710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBZ2" /translation="MGLLSTCSAGEGRGGEGREKNRNTKCQIKKRKYKSGGSTTTAAA KGLGVVDIFADLPDLSLLFPHLSHFFHYPTAMGVGSGTSSKLKNAARKMMVAACGSFS RNSPPRMSVSPTKPKRKSEAEAGIEAESFTNHNDLTSKQNLCAICLEVLSYSSGSSPG QAIFTAQCSHAFHFSCISSNVRHGSITCPICRAHWTQLPRNLNPPACSLSCNQSDPVF RILDDSIATFRVHRRSFLRSARYDDDDPIEPDHTQNHPRLDLALIPLQPAVLTHPCCF RRQSCSHSSSLQMPGIGHNSNHHHHHHHFSSSSSSSLLLQPRQTPSYLCSSSNRRPAY LCIKLTHPRATDMVLVASPNGPHLRLLKQSMALVVFSLRPIDRLAIVTYSSAAARVFP LRRMTSYGKRSALQVIDRLFYMGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDSPT RSYHAMNLQLPIPIHRFHVGFGFGTSNGFVMHEFEEFLRQLLGGVIRDIQLRIGEEAK IIRLGDLRGGEERRVLLDLGECVHVSVGYSYVEGGNDECIKTGETMVSIEDKRETDDG DRDTAISIVGGRTSSVEGWDYHDPYMARRWAKHLHGYRF" CDS join(27213534..27213857,27214126..27214221, 27215462..27216856) /locus_tag="TCM_030478" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Zinc finger family protein isoform 2" /protein_id="EOY29057.1" /db_xref="Phytozome:POPTR_0016s00330.1" /db_xref="TAIR:AT5G60710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBZ2" /translation="MGLLSTCSAGEGRGGEGREKNRNTKCQIKKRKYKSGGSTTTAAA KGLGVVDIFADLPDLSLLFPHLSHFFHYPTAMGVGSGTSSKLKNAARKMMVAACGSFS RNSPPRMSVSPTKPKRKSEAEAGIEAESFTNHNDLTSKNLCAICLEVLSYSSGSSPGQ AIFTAQCSHAFHFSCISSNVRHGSITCPICRAHWTQLPRNLNPPACSLSCNQSDPVFR ILDDSIATFRVHRRSFLRSARYDDDDPIEPDHTQNHPRLDLALIPLQPAVLTHPCCFR RQSCSHSSSLQMPGIGHNSNHHHHHHHFSSSSSSSLLLQPRQTPSYLCSSSNRRPAYL CIKLTHPRATDMVLVASPNGPHLRLLKQSMALVVFSLRPIDRLAIVTYSSAAARVFPL RRMTSYGKRSALQVIDRLFYMGQADPIEGLKKGIKILEDRAHKNPQSCILHLSDSPTR SYHAMNLQLPIPIHRFHVGFGFGTSNGFVMHEFEEFLRQLLGGVIRDIQLRIGEEAKI IRLGDLRGGEERRVLLDLGECVHVSVGYSYVEGGNDECIKTGETMVSIEDKRETDDGD RDTAISIVGGRTSSVEGWDYHDPYMARRWAKHLHGYRF" gene 27217858..27221363 /locus_tag="TCM_030479" /note="dbxref CacaoGD:Thecc1EG030479" mRNA join(27217858..27218246,27219089..27219195, 27219313..27219367,27219646..27219724,27219831..27219900, 27220191..27221363) /locus_tag="TCM_030479" /product="Homeodomain-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29805.m001543" /inference="similar to AA sequence:Phytozome:Glyma15g12930.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:PASA:2:TSA:puevd3b029477t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g03410t00001" mRNA join(27217870..27218246,27219119..27219195, 27219313..27219367,27219646..27219724,27219831..27219900, 27220191..27221363) /locus_tag="TCM_030479" /product="Homeodomain-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29805.m001543" /inference="similar to AA sequence:Phytozome:Glyma15g12930.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03410t00001" CDS join(27218045..27218246,27219089..27219195, 27219313..27219367,27219646..27219724,27219831..27219900, 27220191..27220622) /locus_tag="TCM_030479" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 2" /protein_id="EOY29059.1" /db_xref="Phytozome:Glyma15g12930.1" /db_xref="TAIR:AT3G24120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C965" /translation="MDMYHPRLQAHLHHPHHQEEMLQNLNHKGALAEPCLVLTSDPKP RLRWTADLHDRFVDAVTQLGGPNNFFCLWVTTAEATPKAIMRTMNVKGLTLFHLKSHL QKYRLGKQSGKDMGEGPKDGMSASYLLESPGTNNSTPSLPSSDMNEGYEVKEALRAQM EVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADHFIGGGADTETENLGFSSK VPRNYCVDPLGFYSSQSAEVVNACGQDEEMPSGLHSQRADCSTESCLTSHESPGGLTM EGSAVEGKKKMLNLDSTTGSLIWGDAKVNPHGLTGYGM" CDS join(27218045..27218246,27219119..27219195, 27219313..27219367,27219646..27219724,27219831..27219900, 27220191..27220622) /locus_tag="TCM_030479" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 1" /protein_id="EOY29058.1" /db_xref="Phytozome:Glyma15g12930.1" /db_xref="TAIR:AT3G24120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C965" /translation="MDMYHPRLQAHLHHPHHQEEMLQNLNHKGALAEPCLVLTSDPKP RLRWTADLHDRFVDAVTQLGGPNKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSG KDMGEGPKDGMSASYLLESPGTNNSTPSLPSSDMNEGYEVKEALRAQMEVQSKLHLQV EAEKHLQIRQDAERRYMAMLERACKMLADHFIGGGADTETENLGFSSKVPRNYCVDPL GFYSSQSAEVVNACGQDEEMPSGLHSQRADCSTESCLTSHESPGGLTMEGSAVEGKKK MLNLDSTTGSLIWGDAKVNPHGLTGYGM" gene 27221416..27227884 /locus_tag="TCM_030480" /note="dbxref CacaoGD:Thecc1EG030480" mRNA join(27221416..27221552,27221678..27221785, 27221850..27221904,27223918..27224148,27224808..27224884, 27225047..27225089,27225272..27225329,27226498..27226567, 27226905..27227884) /locus_tag="TCM_030480" /product="Myb-like HTH transcriptional regulator family protein" /inference="alignment:exonerate- protein:2:ricco:29805.m001544" /inference="similar to AA sequence:ricco:29805.m001544" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00287t00002" CDS join(27221550..27221552,27221678..27221785, 27221850..27221904,27223918..27224148,27224808..27224884, 27225047..27225089,27225272..27225329,27226498..27226567, 27226905..27227450) /locus_tag="TCM_030480" /note="dbxref ricco:29805.m001544" /codon_start=1 /product="Myb-like HTH transcriptional regulator family protein" /protein_id="EOY29060.1" /db_xref="TAIR:AT2G01060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HD66" /translation="MQKSWLWPGLWGWWVCLCVCSASLDFFFPFDFGLQTLSEGRNLT GWVAPRSASSSDDQQMYQPKTVPGSSLVRNNSIVHGQHLDCGASQMDPISGGNSLTNN PNLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY RLAKYLPDSSSDGKKADKKETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQR QLQLRIEAQGKYLKKIIEEQQRLSGVLAEAPGSGASVPALGDNGLESDKKTDPATPAP TSESPLQDKAAKERAPAKSHSIDESFSSHHEPLTPDSGCHVGSPAGSPKGERLMKKQR VSMAAAFAKPEVVLPHQILESSISSSFQQSHSVFMTREQFDPSSGISMGNEDQLEKAS GTEL" misc_feature join(27222102..27222813,27223918..27223941) /locus_tag="TCM_030480" /note="Gene fragment of Thecc1EG030480t1; dbxref gnl|CacaoGD|Thecc1EG030480t1; quality class is mediumpartial-partof is thecc1eg030480t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc4665t1; dbxref CacaoGD:Thecc1EG030481t1" gene complement(27227949..27236650) /locus_tag="TCM_030483" /note="dbxref CacaoGD:Thecc1EG030483" mRNA complement(join(27227949..27228387,27228707..27228844, 27229242..27229298,27229379..27229516,27230017..27230202, 27230290..27230388,27230594..27230674,27232049..27232172, 27233807..27233901,27234013..27234139,27234310..27234413, 27234535..27234616,27235580..27236007,27236371..27236650)) /locus_tag="TCM_030483" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29805.m001545" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020480t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00300.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b029481t1a3; alternateUTRof:Thecc1EG030483t1; inference alignment:Newbler:10:TSA:cgbaB_g04830t00001" mRNA complement(join(27227981..27228387,27228707..27228844, 27229242..27229298,27229379..27229516,27230017..27230202, 27230290..27230388,27230594..27230674,27232049..27232172, 27233807..27233901,27234013..27234139,27234310..27234413, 27234535..27234616,27235580..27236017,27236371..27236436)) /locus_tag="TCM_030483" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29805.m001545" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020480t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00300.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04830t00001; inference alignment:Newbler:10:TSA:cgbaB_g04830t00001" CDS complement(join(27228181..27228387,27228707..27228844, 27229242..27229298,27229379..27229516,27230017..27230202, 27230290..27230388,27230594..27230674,27232049..27232172, 27233807..27233901,27234013..27234139,27234310..27234413, 27234535..27234616,27235580..27235620)) /locus_tag="TCM_030483" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG020480t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY29061.1" /db_xref="Phytozome:POPTR_0016s00300.2" /db_xref="TAIR:AT4G17150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C967" /translation="MIDQFINFVIRPPRADYNPDQYLWEREFTLAGRQYKRQDLELTN ARGYMLRCSHYMPSPFPKETPLPCVIYCHGNSGCRADANEAAVILLPSNITVFTLDFS GSGLSDGDYVSLGWHERDDLKIVVSYLRSEKQISRIGLWGRSMGAVTSLLYGAEDPSI AGMVLDSAFSNLFDLMMELVDVYKIRLPKFTVKMAVQYMRRVIQKKAKFDIMDLNCLK VAPKTFIPALFGHASNDKFIQPHHSDLILKLYAGDKNVIKFDGDHNSSRPQFYYDSVS IFFYNVLHPPQISSTCSSKLEKYYDLGDLKVGAGMDESLLYEIITGLQSASTNAASSS SAPPSILTTKPVNELLSEVAPLSRLDSMLSGDNRPDSDEPSNLLDKPNGQSDECCSYT SSNRESWGRCSSLGGSDEESSADCTTADNSHQVTLNVLATPLKSMQQKSPDPSKEEIM KKRAPTIPKKPKREKFEKLEALSKRLRLCILKRVNHRRHRSP" CDS complement(join(27228181..27228387,27228707..27228844, 27229242..27229298,27229379..27229516,27230017..27230202, 27230290..27230388,27230594..27230674,27232049..27232172, 27233807..27233901,27234013..27234139,27234310..27234413, 27234535..27234616,27235580..27235620)) /locus_tag="TCM_030483" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG020480t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY29062.1" /db_xref="Phytozome:POPTR_0016s00300.2" /db_xref="TAIR:AT4G17150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C967" /translation="MIDQFINFVIRPPRADYNPDQYLWEREFTLAGRQYKRQDLELTN ARGYMLRCSHYMPSPFPKETPLPCVIYCHGNSGCRADANEAAVILLPSNITVFTLDFS GSGLSDGDYVSLGWHERDDLKIVVSYLRSEKQISRIGLWGRSMGAVTSLLYGAEDPSI AGMVLDSAFSNLFDLMMELVDVYKIRLPKFTVKMAVQYMRRVIQKKAKFDIMDLNCLK VAPKTFIPALFGHASNDKFIQPHHSDLILKLYAGDKNVIKFDGDHNSSRPQFYYDSVS IFFYNVLHPPQISSTCSSKLEKYYDLGDLKVGAGMDESLLYEIITGLQSASTNAASSS SAPPSILTTKPVNELLSEVAPLSRLDSMLSGDNRPDSDEPSNLLDKPNGQSDECCSYT SSNRESWGRCSSLGGSDEESSADCTTADNSHQVTLNVLATPLKSMQQKSPDPSKEEIM KKRAPTIPKKPKREKFEKLEALSKRLRLCILKRVNHRRHRSP" mRNA complement(join(<27228705..27228844,27229242..27229297, 27230017..27230202,27230290..27230388,27230594..27230674, 27232049..27232172,27233807..27233901,27234013..27234139, 27234310..27234413,27234535..27234616,27235580..27236017, 27236371..27236637)) /locus_tag="TCM_030483" /product="Alpha/beta-Hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29805.m001545" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020480t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00300.2" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc103t20; inference alignment:Newbler:10:TSA:cgbaB_g04830t00001" CDS complement(join(<27228706..27228844,27229242..27229297, 27230017..27230202,27230290..27230388,27230594..27230674, 27232049..27232172,27233807..27233901,27234013..27234139, 27234310..27234413,27234535..27234616,27235580..27235620)) /locus_tag="TCM_030483" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG020480t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 3" /protein_id="EOY29063.1" /db_xref="Phytozome:POPTR_0016s00300.2" /db_xref="TAIR:AT4G17150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q69XI0" /translation="MIDQFINFVIRPPRADYNPDQYLWEREFTLAGRQYKRQDLELTN ARGYMLRCSHYMPSPFPKETPLPCVIYCHGNSGCRADANEAAVILLPSNITVFTLDFS GSGLSDGDYVSLGWHERDDLKIVVSYLRSEKQISRIGLWGRSMGAVTSLLYGAEDPSI AGMVLDSAFSNLFDLMMELVDVYKIRLPKFTVKMAVQYMRRVIQKKAKFDIMDLNCLK VAPKTFIPALFGHASNDKFIQPHHSDLILKLYAGDKNVIKFDGDHNSSRPQFYYDSVS IFFYNVLHPPQISSTCSSKLEKYYDLGDLKVGAGMDEIPCSVEIIDLTVTSHQIYWIS LTAKVTNVAHIQAQTGKVGEDALHWGAVMKNLQQTVRLLTTAIR" mobile_element complement(27232319..27232395) /note="source:CACAO_M_E35511_F5_scaffold_5 1136 1211" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(27236805..27240971) /locus_tag="TCM_030485" /note="dbxref CacaoGD:Thecc1EG030485" mRNA complement(join(27236805..27237709,27239282..27239399, 27239613..27239792,27239893..27239992,27240132..27240377, 27240543..27240971)) /locus_tag="TCM_030485" /product="Phosphoglycerate mutase family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g02060.1" /inference="similar to AA sequence:Phytozome:Glyma15g12960.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11010t00001" CDS complement(join(27237641..27237709,27239282..27239399, 27239613..27239792,27239893..27239992,27240132..27240377, 27240543..27240915)) /locus_tag="TCM_030485" /codon_start=1 /product="Phosphoglycerate mutase family protein" /protein_id="EOY29064.1" /db_xref="Phytozome:Glyma15g12960.1" /db_xref="TAIR:AT3G52155.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGX1" /translation="MPFSCMLAHPVCVLARTHCLSAGPHAQSDSWSARLSAHGCRCLK SLGAKLRFQSSLLVHLRVGSPILEPQALAIGLSRPSPQKGRHTSARSQNSPSVRDYQI PITILAKHTWAEYGCSGLGQHRRTRTSLQSEMNASAAVGVGISPSTSKPLAMGLTPIP IRLRWRRSCSMIETEAELAASEAQPVSRRLILLRHAKSSWQHTALRDHDRPLSKTGRA DAALVSKKLQHMGWIPQLILSSDALRTRATLNIMQEQVRGFLEAEVHFISSFYSIAAM DGQTAEHLQRTICQYSRDEILTIMCMGHNRGWEEAASMFTGASIELKTCNAALLEATG KSWEEAFSVAGFGGWKLQGIVTPSSNL" mobile_element 27240657..27241339 /note="source:CACAO_M_E57654_F152_scaffold_9 1 662" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(27241371..27246150) /locus_tag="TCM_030486" /note="dbxref CacaoGD:Thecc1EG030486" mRNA complement(join(27241371..27242247,27242375..27242482, 27242785..27242874,27242991..27243107,27243329..27243448, 27244958..27246075)) /locus_tag="TCM_030486" /product="Family of Uncharacterized protein function, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g02120.1" /inference="similar to AA sequence:ricco:29805.m001553" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05237t00001" mRNA complement(join(27241814..27242245,27243329..27243448, 27244958..27246150)) /locus_tag="TCM_030486" /product="Family of Uncharacterized protein function, putative isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g02120.1" /inference="similar to AA sequence:frave:gene19872" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc318t9; inference alignment:Newbler:10:TSA:cgbaP2_g05237t00001" mRNA complement(join(27241814..27242247,27242375..27242482, 27242785..27242870,27242991..27243107,27243329..27243448, 27244958..27246150)) /locus_tag="TCM_030486" /product="Family of Uncharacterized protein function, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g02120.1" /inference="similar to AA sequence:frave:gene19872" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc311t2; inference alignment:Newbler:10:TSA:cgbaP2_g05237t00001" mRNA complement(join(27241814..27242247,27242375..27242482, 27242721..27242874,27242991..27243107,27243329..27243448, 27244958..27246150)) /locus_tag="TCM_030486" /product="Family of Uncharacterized protein function, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g02120.1" /inference="similar to AA sequence:ricco:29805.m001553" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc6Loc311t3; inference alignment:Newbler:10:TSA:cgbaP2_g05237t00001" mRNA complement(join(27242065..27242245,27242784..27242874, 27242991..27243107,27243329..27243448,27244958..27246150)) /locus_tag="TCM_030486" /product="Family of Uncharacterized protein function, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g02120.1" /inference="similar to AA sequence:frave:gene19872" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc257t8; inference alignment:Newbler:10:TSA:cgbaP2_g05237t00001" CDS complement(join(27242156..27242245,27243329..27243448, 27244958..27245980)) /locus_tag="TCM_030486" /note="encoded by transcript variant 7; alternatively spliced; dbxref frave:gene19872" /codon_start=1 /product="Family of Uncharacterized protein function, putative isoform 7" /protein_id="EOY29071.1" /db_xref="TAIR:AT2G44190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HAX0" /translation="MMVQAGGVVESNHAVAPPLPHPPQRRPRVREVSSRFMSPVASSY SGELAKSPLLKQLRSISAQRQRRHLEMEADENRPAPSETPRSLESSFVNTNSNSNIQK KHHPSRTYSDSGKLFGRSTTGAPSKPDTPTPTISSFDRTATLSSSSRIRLNHRSANIS STATASAAARLLQSSGMALSSKPNVSSPSQEASSVSSNDMGSTTRSLVNFCSSMPEAD LLPSVSTRLLTDRNVNNVVDSSKLPASPLSRSLNSPLSICEPSLFHHPNPPIKGVSTR MGPLSLPPVPSHTKAGTDAIRRPKKISSHQEDLHSLKLLHNYYLQWRYANAKAEASMQ IQKGETERTLYSLEVKIAELNDCVRRKRIELELLQRMKTLSKILEAQGREQFKRAAYA VAIDSCPSKLQPYVIFSY" CDS complement(join(27242170..27242247,27242375..27242482, 27242785..27242874,27242991..27243107,27243329..27243448, 27244958..27245980)) /locus_tag="TCM_030486" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29805.m001553" /codon_start=1 /product="Family of Uncharacterized protein function, putative isoform 1" /protein_id="EOY29065.1" /db_xref="TAIR:AT2G44190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HAX0" /translation="MMVQAGGVVESNHAVAPPLPHPPQRRPRVREVSSRFMSPVASSY SGELAKSPLLKQLRSISAQRQRRHLEMEADENRPAPSETPRSLESSFVNTNSNSNIQK KHHPSRTYSDSGKLFGRSTTGAPSKPDTPTPTISSFDRTATLSSSSRIRLNHRSANIS STATASAAARLLQSSGMALSSKPNVSSPSQEASSVSSNDMGSTTRSLVNFCSSMPEAD LLPSVSTRLLTDRNVNNVVDSSKLPASPLSRSLNSPLSICEPSLFHHPNPPIKGVSTR MGPLSLPPVPSHTKAGTDAIRRPKKISSHQEDLHSLKLLHNYYLQWRYANAKAEASMQ IQKGETERTLYSLEVKIAELNDCVRRKRIELELLQRMKTLSKILEAQMPYLEEWSAFQ GDYLNSLAEAIQSLLNTSHRLPISGNVKADTRKVGEAMKSAIKWMEMILCHVQSFMPK AEEMERLISELARVAVGERALIDECGDLLSKTNTFLVEESSLRGQLMQLQLIHVPVNS NHM" CDS complement(join(27242229..27242245,27242784..27242874, 27242991..27243107,27243329..27243448,27244958..27245980)) /locus_tag="TCM_030486" /note="encoded by transcript variant 5; alternatively spliced; dbxref frave:gene19872" /codon_start=1 /product="Family of Uncharacterized protein function, putative isoform 5" /protein_id="EOY29069.1" /db_xref="TAIR:AT2G44190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HAX0" /translation="MMVQAGGVVESNHAVAPPLPHPPQRRPRVREVSSRFMSPVASSY SGELAKSPLLKQLRSISAQRQRRHLEMEADENRPAPSETPRSLESSFVNTNSNSNIQK KHHPSRTYSDSGKLFGRSTTGAPSKPDTPTPTISSFDRTATLSSSSRIRLNHRSANIS STATASAAARLLQSSGMALSSKPNVSSPSQEASSVSSNDMGSTTRSLVNFCSSMPEAD LLPSVSTRLLTDRNVNNVVDSSKLPASPLSRSLNSPLSICEPSLFHHPNPPIKGVSTR MGPLSLPPVPSHTKAGTDAIRRPKKISSHQEDLHSLKLLHNYYLQWRYANAKAEASMQ IQKGETERTLYSLEVKIAELNDCVRRKRIELELLQRMKTLSKILEAQMPYLEEWSAFQ GDYLNSLAEAIQSLLNTSHRLPISGNVKADTRKVGEAMKSAIKWMEMILCHVQSFMPK GKRAV" mRNA complement(join(27242453..27242482,27242721..27242872, 27243078..27243107,27243329..27243448,27244958..27246150)) /locus_tag="TCM_030486" /product="Family of Uncharacterized protein function, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g02120.1" /inference="similar to AA sequence:frave:gene19872" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc6Loc318t4; inference alignment:Newbler:10:TSA:cgbaP2_g05237t00001" CDS complement(join(27242461..27242482,27242721..27242872, 27243078..27243107,27243329..27243448,27244958..27245980)) /locus_tag="TCM_030486" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene19872" /codon_start=1 /product="Family of Uncharacterized protein function, putative isoform 4" /protein_id="EOY29068.1" /db_xref="TAIR:AT2G44190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HAX0" /translation="MMVQAGGVVESNHAVAPPLPHPPQRRPRVREVSSRFMSPVASSY SGELAKSPLLKQLRSISAQRQRRHLEMEADENRPAPSETPRSLESSFVNTNSNSNIQK KHHPSRTYSDSGKLFGRSTTGAPSKPDTPTPTISSFDRTATLSSSSRIRLNHRSANIS STATASAAARLLQSSGMALSSKPNVSSPSQEASSVSSNDMGSTTRSLVNFCSSMPEAD LLPSVSTRLLTDRNVNNVVDSSKLPASPLSRSLNSPLSICEPSLFHHPNPPIKGVSTR MGPLSLPPVPSHTKAGTDAIRRPKKISSHQEDLHSLKLLHNYYLQWRYANAKAEASMQ IQKGETERTLYSLEVKIAELNDCVRRKRIELELLQRMKTLSKILEAQMPYLEEWSAFR YKKGRGGNEICNKMDGNDTLPCSKLYAKGRVVVLQISYSKKKERKEKKRKLKKWKD" CDS complement(join(27242478..27242482,27242721..27242874, 27242991..27243107,27243329..27243448,27244958..27245980)) /locus_tag="TCM_030486" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29805.m001553" /codon_start=1 /product="Family of Uncharacterized protein function, putative isoform 2" /protein_id="EOY29066.1" /db_xref="TAIR:AT2G44190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HAX0" /translation="MMVQAGGVVESNHAVAPPLPHPPQRRPRVREVSSRFMSPVASSY SGELAKSPLLKQLRSISAQRQRRHLEMEADENRPAPSETPRSLESSFVNTNSNSNIQK KHHPSRTYSDSGKLFGRSTTGAPSKPDTPTPTISSFDRTATLSSSSRIRLNHRSANIS STATASAAARLLQSSGMALSSKPNVSSPSQEASSVSSNDMGSTTRSLVNFCSSMPEAD LLPSVSTRLLTDRNVNNVVDSSKLPASPLSRSLNSPLSICEPSLFHHPNPPIKGVSTR MGPLSLPPVPSHTKAGTDAIRRPKKISSHQEDLHSLKLLHNYYLQWRYANAKAEASMQ IQKGETERTLYSLEVKIAELNDCVRRKRIELELLQRMKTLSKILEAQMPYLEEWSAFQ GDYLNSLAEAIQSLLNTSHRLPISGNVKADTRKVGEAMKSAIKWMEMILCHVQSFMPK VGWLSYRYPIQKRKKEKKRKES" CDS complement(join(27242856..27242870,27242991..27243107, 27243329..27243448,27244958..27245980)) /locus_tag="TCM_030486" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene19872" /codon_start=1 /product="Family of Uncharacterized protein function, putative isoform 3" /protein_id="EOY29067.1" /db_xref="TAIR:AT2G44190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HAX0" /translation="MMVQAGGVVESNHAVAPPLPHPPQRRPRVREVSSRFMSPVASSY SGELAKSPLLKQLRSISAQRQRRHLEMEADENRPAPSETPRSLESSFVNTNSNSNIQK KHHPSRTYSDSGKLFGRSTTGAPSKPDTPTPTISSFDRTATLSSSSRIRLNHRSANIS STATASAAARLLQSSGMALSSKPNVSSPSQEASSVSSNDMGSTTRSLVNFCSSMPEAD LLPSVSTRLLTDRNVNNVVDSSKLPASPLSRSLNSPLSICEPSLFHHPNPPIKGVSTR MGPLSLPPVPSHTKAGTDAIRRPKKISSHQEDLHSLKLLHNYYLQWRYANAKAEASMQ IQKGETERTLYSLEVKIAELNDCVRRKRIELELLQRMKTLSKILEAQMPYLEEWSAFQ GDYLNSLAEAIQSLLNTSHRLPISGNVKIQER" mRNA complement(join(27243082..27243448,27244958..27246150)) /locus_tag="TCM_030486" /product="Family of Uncharacterized protein function, putative isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g02120.1" /inference="similar to AA sequence:frave:gene19872" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc309t9; inference alignment:Newbler:10:TSA:cgbaP2_g05237t00001" CDS complement(join(27243308..27243448,27244958..27245980)) /locus_tag="TCM_030486" /note="encoded by transcript variant 6; alternatively spliced; dbxref frave:gene19872" /codon_start=1 /product="Family of Uncharacterized protein function, putative isoform 6" /protein_id="EOY29070.1" /db_xref="TAIR:AT2G44190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HAX0" /translation="MMVQAGGVVESNHAVAPPLPHPPQRRPRVREVSSRFMSPVASSY SGELAKSPLLKQLRSISAQRQRRHLEMEADENRPAPSETPRSLESSFVNTNSNSNIQK KHHPSRTYSDSGKLFGRSTTGAPSKPDTPTPTISSFDRTATLSSSSRIRLNHRSANIS STATASAAARLLQSSGMALSSKPNVSSPSQEASSVSSNDMGSTTRSLVNFCSSMPEAD LLPSVSTRLLTDRNVNNVVDSSKLPASPLSRSLNSPLSICEPSLFHHPNPPIKGVSTR MGPLSLPPVPSHTKAGTDAIRRPKKISSHQEDLHSLKLLHNYYLQWRYANAKAEASMQ IQKGETERTLYSLEVKIAELNDCVRRKRIELELLQRMKTLSKILEAQVRLLTW" mobile_element complement(27246248..27252540) /note="source:CACAO_Mutator_E1149_scaffold_5 2462 13651" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(27252525..27254141) /note="source:CACAO_Mutator_E1149_scaffold_5 6930 8448" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(27254242..27255204) /note="source:CACAO_on_S_E176_scaffold_5 1 798" /mobile_element_type="transposon:TIR/Mutator" mobile_element 27255828..27256549 /note="source:CACAO_M_E33977_F20_scaffold_4 15618 16340" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27256616..27256737) /note="source:scaffold_1_CACTA_0009 1631 1754" /mobile_element_type="transposon:TIR/CACTA" gene 27257653..27272805 /locus_tag="TCM_030490" /note="dbxref CacaoGD:Thecc1EG030490" mRNA join(27257653..27258093,27258171..27258222, 27258334..27258393,27258553..27258577,27258684..27258769, 27258865..27258976,27259919..27259984,27260086..27260105, 27260188..27260285,27267568..27267596,27267694..27267725, 27267829..27267876,27267977..27268037,27268123..27268220, 27268313..27268388,27268507..27268526,27268658..27268755, 27268832..27268941,27269867..27269950,27271224..27271321, 27271430..27271512,27272343..27272805) /locus_tag="TCM_030490" /product="Na+/H+ antiporter 6 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00210.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00210.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9271t2; inference alignment:Newbler:10:TSA:cgbaL_g12867t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc605t7" mRNA join(27257653..27258093,27258171..27258222, 27258334..27258393,27258553..27258577,27258684..27258769, 27258865..27258976,27259922..27259984,27260086..27260105, 27260188..27260285,27267568..27267596,27267694..27267725, 27267829..27267876,27267977..27268037,27268123..27268220, 27268313..27268388,27268507..27268526,27268658..27268755, 27268832..27268941,27269867..27269950,27271224..27271321, 27271430..27271512,27272343..27272805) /locus_tag="TCM_030490" /product="Na+/H+ antiporter 6 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00210.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00210.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc6g9271t3; inference alignment:Newbler:10:TSA:cgbaL_g12867t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc6Loc605t7" mRNA join(27257667..27258093,27258171..27258268, 27258520..27258577,27258655..27258769,27258865..27258976, 27259922..27259984,27260086..27260105,27260170..27260285, 27262032..27262154,27264300..27264411,27267568..27267619, 27267691..27267725,27267829..27267876,27267977..27268037, 27268123..27268220,27268313..27268388,27268507..27268526, 27268658..27268755,27268832..27268941,27269867..27269950, 27271224..27271321,27271430..27271512,27272343..27272795) /locus_tag="TCM_030490" /product="Na+/H+ antiporter 6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s00210.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s00210.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12867t00001" CDS join(27257925..27258093,27258171..27258268, 27258520..27258577,27258655..27258769,27258865..27258976, 27259922..27259984,27260086..27260105,27260170..27260285, 27262032..27262154,27264300..27264411,27267568..27267619, 27267691..27267725,27267829..27267876,27267977..27268037, 27268123..27268220,27268313..27268388,27268507..27268526, 27268658..27268755,27268832..27268941,27269867..27269950, 27271224..27271321,27271430..27271512,27272343..27272392) /locus_tag="TCM_030490" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Na+/H+ antiporter 6 isoform 1" /protein_id="EOY29072.1" /db_xref="Phytozome:POPTR_0016s00210.1" /db_xref="TAIR:AT1G79610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWU6" /translation="MGISTVEEGSPGKEQQAAGLGILLQIMMLVLSFVLGHVLRRHRF YYLPEASASLLIGLIVGGLANISDTETSIRSSIASYYYIFFSFFALIVFLNSLFRHSI RVQPITFLTLFSPFWQKPFFSNFGAIVTFAILGTLIASVVTGVLVYLGGLMYLMYRLP FVECLMFGALISATDPVTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYSVASLCR TMSLVRSHVSSGQNFFMVIVRFLETFVGSMSAEATTTKILRSSTHQARDSANLKLNKC LASNGDPHIWKLNTEGSYLEIVRPDPQHPIWKFQDNRIVGTVVVAHTQLQKVWCRSWI YFCSNILSDQSFNLFKYAGLDIDNLQNLECCLFVLFPYFSYMLAEGLSLSGIVSILFT GIVMKHYTYSNLSENSQRFVSAFFHLISSLAETFTFIYMGFDIAMEKHSWSHVGFIFF SILFIGVARAANVFSCAYLVNSVRPVHRQIPLNHQKALWYSGLRGAMAFALALQSVHD LPEGHGQTIFTATTAIVVLTVLLIGGSTGTMLGALQVVGDGHDGHLGEIFDGNNGYVA PTYNEDGTTGNRFKMKLKEFHKSTASFSALDRNYLTPFFTSQNGDDEEEHDDPMPSSR NGGFHDHS" CDS join(27257925..27258093,27258171..27258222, 27258334..27258393,27258553..27258577,27258684..27258769, 27258865..27258976,27259919..27259984,27260086..27260105, 27260188..27260285,27267568..27267596,27267694..27267725, 27267829..27267876,27267977..27268037,27268123..27268220, 27268313..27268388,27268507..27268526,27268658..27268755, 27268832..27268941,27269867..27269950,27271224..27271321, 27271430..27271512,27272343..27272392) /locus_tag="TCM_030490" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Na+/H+ antiporter 6 isoform 3" /protein_id="EOY29074.1" /db_xref="Phytozome:POPTR_0016s00210.1" /db_xref="TAIR:AT1G79610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWU6" /translation="MGISTVEEGSPGKEQQAAGLGILLQIMMLVLSFVLGHVLRRHRF YYLPEASASLLIGLIVGGLANISDTETSIRAWFNFHEEFFFLFLLPPIIFQSGFSLSP KPFFSNFGAIVTFAILGTLIASVVTGVLVYLGGLMYLMYRLPFVECLMFGALISATDP VTVLSIFQQELGTDMNLYALVFGESVLNDAMAISLYRTMSLVRSHVSSGQNFFMVIVR FLETFVGSMSAGVGVGFTSALLFKYAGLDIDNLQNLECCLFVLFPYFSYMLAEGLSLS GIVSILFTGIVMKHYTYSNLSENSQRFVSAFFHLISSLAETFTFIYMGFDIAMEKHSW SHVGFIFFSILFIGVARAANVFSCAYLVNSVRPVHRQIPLNHQKALWYSGLRGAMAFA LALQSVHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGTMLGALQVVGDGHDGHLGEIF DGNNGYVAPTYNEDGTTGNRFKMKLKEFHKSTASFSALDRNYLTPFFTSQNGDDEEEH DDPMPSSRNGGFHDHS" CDS join(27257925..27258093,27258171..27258222, 27258334..27258393,27258553..27258577,27258684..27258769, 27258865..27258976,27259922..27259984,27260086..27260105, 27260188..27260285,27267568..27267596,27267694..27267725, 27267829..27267876,27267977..27268037,27268123..27268220, 27268313..27268388,27268507..27268526,27268658..27268755, 27268832..27268941,27269867..27269950,27271224..27271321, 27271430..27271512,27272343..27272392) /locus_tag="TCM_030490" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Na+/H+ antiporter 6 isoform 2" /protein_id="EOY29073.1" /db_xref="Phytozome:POPTR_0016s00210.1" /db_xref="TAIR:AT1G79610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWU6" /translation="MGISTVEEGSPGKEQQAAGLGILLQIMMLVLSFVLGHVLRRHRF YYLPEASASLLIGLIVGGLANISDTETSIRAWFNFHEEFFFLFLLPPIIFQSGFSLSP KPFFSNFGAIVTFAILGTLIASVVTGVLVYLGGLMYLMYRLPFVECLMFGALISATDP VTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSLVRSHVSSGQNFFMVIVRF LETFVGSMSAGVGVGFTSALLFKYAGLDIDNLQNLECCLFVLFPYFSYMLAEGLSLSG IVSILFTGIVMKHYTYSNLSENSQRFVSAFFHLISSLAETFTFIYMGFDIAMEKHSWS HVGFIFFSILFIGVARAANVFSCAYLVNSVRPVHRQIPLNHQKALWYSGLRGAMAFAL ALQSVHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGTMLGALQVVGDGHDGHLGEIFD GNNGYVAPTYNEDGTTGNRFKMKLKEFHKSTASFSALDRNYLTPFFTSQNGDDEEEHD DPMPSSRNGGFHDHS" gene complement(27262452..27265921) /locus_tag="TCM_030492" /note="dbxref CacaoGD:Thecc1EG030492" mRNA complement(join(27262452..27262764,27264130..27264913, 27265120..27265921)) /locus_tag="TCM_030492" /product="Uncharacterized protein" /note="quality class is medium-expresste, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.60 coverage" mobile_element 27263436..27266718 /note="source:CACAO_M_S_E84697_F118_scaffold_6 1 3283" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(27264171..27264913,27265120..27265780)) /locus_tag="TCM_030492" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY29075.1" /translation="MEVDTPQPSWDEFKRQCHLRFGPPIRSHKLGELAKLRQSGTVPD YQENFEQLASRAGTLIQAQKIELYISSLAEYIAVEVELHNLSDLAIAMSISRLYERKG QPTRTPISEVRRSKPPDTPLQHRTRFVKKLTKDEMEETRLKGLCFNCDEPFVKGHQRK KLFRIDSVEEGDEQQTEYEPPTNTDQPEISLNAIISISTPQNMRLQGKLNGNPALTLV DSGVNWLKTLGPILWDFTNMWMSFTKLEKQIELYGIKTSKPDQSAEIQVVTVEDYYAD LQRLLQDFVSLFQERTGLYNIFKLHGLPERMVSDKDVTFTSTFWKELFRLSSTKLCFS SAYHPQSDGQTTVVNRTVEMYLRCFTSAHPTKWMDLLSWAEYSYNTSFHSSLQTTPFE AVYGQPPPCLLSYCPGISKLDVVDQALQSPDMILKSLRQNLSYAQHKMKTIYDSKHRN IEFQVGDRVLLRLQPYR" mobile_element complement(27275245..27276400) /note="source:CACAO_LINE_E_33_scaffold_10 1040 2239" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(27276383..27276644) /note="source:CACAO_LINE_E_33_scaffold_10 493 753" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 27278693..27280990 /note="source:CACAO_LINE_E_69_scaffold_2 1 2298" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 27286574..27287062 /note="source:CACAO_LINE_E_87_scaffold_3 4 494" /mobile_element_type="retrotransposon:LINE/L1" gene complement(27286638..27290955) /locus_tag="TCM_030494" /note="dbxref CacaoGD:Thecc1EG030494" mRNA complement(join(27286638..27286714,27286786..27288311, 27288384..27289312,27289382..27290955)) /locus_tag="TCM_030494" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(27287708..27288311,27288384..27289312, 27289382..27290479)) /locus_tag="TCM_030494" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY29076.1" /translation="MQNALNPRDFPSLPTIHGLPPGRPLDISLQPPAAPLPITAGNPP RQLCLPTEKAPVNWTKHPPPPTTEGISQGFQVQPQPPASPRTAKKSFLSVVNAVKLAL VPPTRPTFRYKDKPAVRFFEDEIEALAQPFKFAIVGKFSKMPRLTEIRQSFVSLGLSG VYNIRWMNYKHILIHLSNEQDFNRIWTKQTWFITNQKMRVFKWTPDFETDKESPIVPV WISFPNLKAHLFEKSALLMIAKAIGNPLYIDEATANGTRPSVARVCIEYDCLKPPVDS VWIVVSKRGSEDMSGGYLQKVEFAPMPEYCNHCCHVGHNVSKCLILGSRSNTHKSGGK TALESSHERTQINAPSNRKDNEERPMVADIENEVRHLDRSDENGSKGADMILEDKGNE QSKNHNSFAVLESVEDDENQEQDRTKKHGQTEYVNSTLGREKISIGRPVNGSKLRDND VVEIYRLQDDRRLSSEDPNNKQQQQCMIEKGKERQVEKESANTSAVILHVTCLENGGQ AANREKAARVAQPQVCEGKPRDNHVQGERIPSKKHANRKDAEATAAIEGTATPAAGET ILLLPFYVNGELIHTNKVMGEQEKKFAFTAEDDGKSQPESLYVAASQNLKNPFIAPTM QTAEKRQQTLTAQAAVSILHGEEVLFPASAFDGEDMTAPVGVVGPLAAMAGHEVHAER SAGHGNSAMLAQKTAAATEQFTTTPATDGYLPQDEGDESSCVRRETTVERQNEADDQN NNGKSGAAAFFANMQTVEEVLQLHFHDNGKHGHAGKDVEECVNHADVKRGSTVSERNN KNKTKKLQKINVGVADSSLQGSDKQWPECLPFDREPSALGQLLLKVMAHWHQQRESLP YTPPSFYLTNGATQAESREK" CONTIG join(KE132931.1:1..2204196,gap(10000),KE132932.1:1..1664003, gap(10000),KE132933.1:1..7571419,gap(10000),KE132934.1:1..6338705, gap(10000),KE132935.1:1..5897174,gap(10000),KE132936.1:1..1880634, gap(10000),KE132937.1:1..303335,gap(10000),KE132938.1:1..1361520) //